Index: trunk/ippScripts/scripts/phase2.pl
===================================================================
--- trunk/ippScripts/scripts/phase2.pl	(revision 11552)
+++ trunk/ippScripts/scripts/phase2.pl	(revision 11559)
@@ -79,12 +79,12 @@
 
 ### Output file name --- must match camera configuration!
-my $outputRoot =  $exp_tag . '.p2';
-$outputRoot = File::Spec->catfile( $workdir, $outputRoot );
-$input = $ipprc->convert_filename_absolute ( $input );
-
+my $outputFile =  "$exp_tag.p2";
+my $outputRoot = File::Spec->catfile( $workdir, $exp_tag, $outputFile );
 my $outputImage = $ipprc->filename("PPIMAGE.OUTPUT", $outputRoot, $class_id);
 my $outputBin1 = $ipprc->filename("PPIMAGE.BIN1", $outputRoot, $class_id);
 my $outputBin2 = $ipprc->filename("PPIMAGE.BIN2", $outputRoot, $class_id);
 my $outputStats = $outputRoot  . '.' . $class_id . '.stats';
+
+$input = $ipprc->convert_filename_absolute( $input );
 
 # Run ppImage