Index: /branches/rel-1-1/PS-IPP-Config/.cvsignore =================================================================== --- /branches/rel-1-1/PS-IPP-Config/.cvsignore (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/.cvsignore (revision 12167) @@ -0,0 +1,3 @@ +Build +_build +blib Index: /branches/rel-1-1/PS-IPP-Config/Build.PL =================================================================== --- /branches/rel-1-1/PS-IPP-Config/Build.PL (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/Build.PL (revision 12167) @@ -0,0 +1,21 @@ +use Module::Build; +# See perldoc Module::Build for details of how this works + +Module::Build->new( + module_name => 'PS::IPP::Config', + dist_version_from => 'lib/PS/IPP//Config.pm', + author => 'Paul Price and Joshua Hoblitt ', + license => 'gpl', + create_makefile_pl => 'passthrough', + requires => { + 'Carp' => 0, + 'Class::Accessor::Fast' => '0.19', + 'PS::IPP::Metadata::Config' => '0.07', + 'Statistics::Descriptive' => '2.6', + 'URI' => 0, + }, + recommends => { + 'Test::Distribution' => '1.22', + }, + +)->create_build_script; Index: /branches/rel-1-1/PS-IPP-Config/LICENSE =================================================================== --- /branches/rel-1-1/PS-IPP-Config/LICENSE (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/LICENSE (revision 12167) @@ -0,0 +1,260 @@ +The General Public License (GPL) +Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave, +Cambridge, MA 02139, USA. 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IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED +TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY +WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS +PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES +ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM +(INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING +RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY +OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS +BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. + +END OF TERMS AND CONDITIONS Index: /branches/rel-1-1/PS-IPP-Config/MANIFEST =================================================================== --- /branches/rel-1-1/PS-IPP-Config/MANIFEST (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/MANIFEST (revision 12167) @@ -0,0 +1,7 @@ +Build.PL +LICENSE +lib/PS/IPP/Config.pm +lib/PS/IPP/Metadata/List.pm +lib/PS/IPP/Metadata/Stats.pm +t/00_distribution.t +MANIFEST Index: /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Config.pm =================================================================== --- /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Config.pm (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Config.pm (revision 12167) @@ -0,0 +1,480 @@ +# Copyright (c) 2006 Paul Price, Joshua Hoblitt +# +# $Id: Config.pm,v 1.31 2007-02-16 20:58:15 price Exp $ + +package PS::IPP::Config; + +use strict; +use warnings FATAL => qw( all ); + +our $VERSION = '1.00'; + +use Carp qw( carp ); +use File::Spec; +use PS::IPP::Metadata::Config 0.07; +use Getopt::Long qw( GetOptions :config gnu_getopt pass_through ); # Set pass_through so we don't kill @ARGV +use URI; + +use base qw( Class::Accessor::Fast Exporter ); +__PACKAGE__->mk_accessors( qw( path ) ); + +our @EXPORT_OK = qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR +); + +our $PS_EXIT_SUCCESS = 0; +our $PS_EXIT_UNKNOWN_ERROR = 1; +our $PS_EXIT_SYS_ERROR = 2; +our $PS_EXIT_CONFIG_ERROR = 3; +our $PS_EXIT_PROG_ERROR = 4; +our $PS_EXIT_DATA_ERROR = 5; +our $PS_EXIT_TIMEOUT_ERROR = 6; + +our $parser = PS::IPP::Metadata::Config->new; # Metadata parser +$parser->overwrite(0); # Turn off overwrite + +#$::RD_TRACE = 1; +#$::RD_HINT = 1; +#use Data::Dumper; + +# Given a parsed metadata, parse it into an array of hashes +sub new { + my $class = shift; # Class name + my $camera = shift; # Camera name + + unless (defined $class) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + # Get location of ipprc file + my $name; # Name of ipprc file + GetOptions( 'site=s' => \$name ); + $name = $ENV{PS_SITE} unless defined $name; + $name = $ENV{HOME} . '/.ipprc' unless defined $name; + + my $file; # File handle + unless (open $file, $name) { + carp "Unable to open ipprc file $name: $!"; + exit($PS_EXIT_CONFIG_ERROR); + } + my @contents = <$file>; # Contents of the ipprc file + close $file; + + my $mdc = $parser->parse( join '', @contents); # The parsed metadata config + + my $path = _interpolate_env(_mdLookupStr($mdc, 'PATH')); # The path + unless (defined $path) { + carp "PATH is not set in $name\n"; + exit($PS_EXIT_CONFIG_ERROR); + } + + # Interpolate environment variables in the work directory + + my $self = { + path => $path, # Path + camera => undef, # Camera configuration + _ipprc => $mdc # The parsed configuration + }; + bless $self, $class; + + $self->define_camera($camera) if defined $camera; + + return $self; +} + +# Define a camera to use +sub define_camera +{ + my $self = shift; # Configuration object + my $name = shift; # Camera name + + unless (defined $self and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + my $camera_list = _mdLookupMD($self->{_ipprc}, 'CAMERAS'); # List of cameras + my $filename = _mdLookupStr($camera_list, $name); # Filename of camera configuration + unless (defined $filename) { + carp "Unable to find configuration file for camera $name\n"; + exit($PS_EXIT_CONFIG_ERROR); + } + + my @path = split /:/, $self->{path}; # List of paths to try + my $found = 0; # Found it? + my $realfile; + my $tries = 0; + while (not $found) { + ## try a second time + foreach my $path (@path) { + $realfile = File::Spec->rel2abs( $filename, $path ); + if ($tries) { + print "re-trying ($tries): filename: $filename, path: $path -> "; + print "test: $realfile\n"; + } + if (-f $realfile) { + $found = 1; + last; + } + } + if (not $found) { + $tries ++; + if ($tries > 4) { + unless ($found) { + carp "Unable to find camera configuration file $filename\n"; + exit($PS_EXIT_CONFIG_ERROR); + } + } + ## try again after a moment? + system ("df"); + select(undef, undef, undef, 0.25); + } + } + + # Read the file + my $file; # File handle + unless (open $file, $realfile) { + carp "Unable to open camera configuration file $realfile: $!"; + exit($PS_EXIT_CONFIG_ERROR); + } + my @contents = <$file>; + close $file; + $self->{camera} = $parser->parse( join '', @contents); # The parsed metadata config + + # XXX why isn't just $self being returned here? -JH + return defined $self->{camera}; +} + + +# select a datapath from config.site +sub datapath +{ + my $self = shift; # Configuration object + my $name = shift; # datapath name + + unless (defined $self and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + my $path_list = _mdLookupMD($self->{_ipprc}, 'DATAPATH'); # List of paths + my $pathname = _mdLookupStr($path_list, $name); # Path of interest + unless (defined $pathname) { + carp "Unable to find camera configuration file $pathname\n" ; + exit($PS_EXIT_CONFIG_ERROR); + } + + return $pathname; +} + +sub convert_filename_absolute +{ + my $self = shift; # Configuration object + my $name = shift; # raw name + + unless (defined $self and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + my $uri = URI->new($name) or die "Unable to parse URI: $name\n"; # URI + my $scheme = $uri->scheme(); # Scheme, e.g., file, path + if (lc($scheme) eq 'file') { + my $host = $uri->host(); + my $path; + if (defined $host) { + # The user has file://some/directory/ but *probably* wants + # /some/directory/ i.e., the URI is technically wrong + # (should be one or three leading slashes, not two). We + # choose to fix it and give the user what we think they + # want, rather than what they asked for. + $path = File::Spec->catfile( undef, $host, $uri->path() ); + } else { + $path = $uri->path(); + } + + return File::Spec->canonpath( $path ); + } + + if (lc($scheme) eq 'path') { + my $authority = $uri->authority(); + my $path = $self->datapath( $authority ); + my @segments = $uri->path_segments(); + return File::Spec->catfile( $path, @segments ); + } + + return $name; +} + +sub convert_filename_relative +{ + my $self = shift; # Configuration object + my $name = shift; # raw name + + unless (defined $self and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + $name = File::Spec->canonpath( $name); # Clean up + my ($vol, $dir, $file) = File::Spec->splitpath( $name ); + my @dirs = File::Spec->splitdir( $dir ); + pop @dirs; # Get rid of filename + + my $path_list = _mdLookupMD($self->{_ipprc}, 'DATAPATH'); # List of paths + my $best_path; + my $best_name; + my $best_score; + CFR_PATH_CHECK: foreach my $path_item (@$path_list) { + my $path_name = $path_item->{name}; # Name of the path + my $path = File::Spec->canonpath( $path_item->{value} ); # The path + my @path_dirs = File::Spec->splitdir( $path ); + + # Check if the path is suitable + next if scalar @path_dirs > scalar @dirs; + for (my $i = 0; $i < scalar @path_dirs; $i++) { + next CFR_PATH_CHECK if $path_dirs[$i] ne $dirs[$i]; + } + # It is suitable; see if it is 'best' (minimizes the number of directories) + my $score = scalar @path_dirs; + if (not defined $best_score or $score > $best_score) { + $best_path = $path; + $best_score = $score; + $best_name = $path_name; + } + } + my $uri = URI->new(); # URI to return + if (defined $best_score) { + my $rel = File::Spec->abs2rel( $name, $best_path ); + my @segments = File::Spec->splitdir( $rel ); + $uri->scheme( 'path' ); + $uri->authority( $best_name ); + $uri->path_segments( @segments ); + } else { + $uri->scheme( 'file' ); + $uri->path( $name ); + } + + return $uri->as_string(); +} + +# Return a rejection limit from the camera configuration +sub rejection +{ + my $self = shift; # Configuration object + my $name = shift; # Name of limit + my $type = lc(shift); # Type of frame + my $filter = shift; # Filter name, for extra qualification; optional + + unless (defined $self and defined $name and defined $type) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + my $camera = $self->{camera}; # Camera configuration + unless (defined $camera) { + carp "Camera has not yet been defined.\n"; + return undef; + } + + my $rejection = _mdLookupMD($camera, 'REJECTION'); # Rejection list + unless (defined $rejection) { + carp "Can't find REJECTION list in camera configuration.\n"; + return undef; + } + + TYPES: foreach my $item (@$rejection) { + if (lc($item->{name}) eq $type) { + unless ($item->{class} eq "metadata") { + carp "$name within REJECTION is not of type METADATA"; + exit($PS_EXIT_PROG_ERROR); + } + my $limits = $item->{value}; # List of rejection limits + + # Check the FILTER first + foreach my $limit (@$limits) { + if ($limit->{name} eq 'FILTER') { + if ($limit->{value} eq '*' or + (defined $filter and + $limit->{value} eq $filter)) { + last; + } + next TYPES; # Doesn't match --- look at the next one + } + } + + foreach my $limit (@$limits) { + return $limit->{value} if $limit->{name} eq $name; + } + carp "Unable to find limit $name in REJECTION list for $type.\n"; + return undef; + } + } + + if (not defined $filter) { + carp "Unable to find type $type with no FILTER in REJECTION list.\n"; + } else { + carp "Unable to find type $type with FILTER $filter in REJECTION list.\n"; + } + return undef; +} + +# Return a filename from the camera configuration FILERULES +sub filename +{ + my $self = shift; # Configuration object + my $name = shift; # Name of the file + my $output = shift; # For replacing {OUTPUT} + my $component = shift; # For replacing {CHIP.NAME} and {CELL.NAME} + + unless (defined $self and defined $name and defined $output) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + my $camera = $self->{camera}; # Camera configuration + unless (defined $camera) { + carp "Camera has not yet been defined.\n"; + return undef; + } + + my $filerules = _mdLookupMD($camera, 'FILERULES'); # File rules + unless (defined $filerules) { + carp "Can't find FILERULES list in camera configuration.\n"; + return undef; + } + + my $file = _mdLookupMDwithRedirect($filerules, $name); # The file of interest + unless (defined $file) { + carp "Can't find $name within FILERULES in camera configuration.\n"; + return undef; + } + + my $filename = _mdLookupStr($file, "FILENAME.RULE"); # File name + unless (defined $filename) { + carp "Can't find FILENAME.RULE for $name within FILERULES in camera configuration.\n"; + return undef; + } + + $filename =~ s/\{OUTPUT\}/$output/; + if ($filename =~ /\{CHIP\.NAME\}/) { + unless (defined $component) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + $filename =~ s/\{CHIP\.NAME\}/$component/; + $filename =~ s/\{CELL\.NAME\}/$component/; + } + + return $filename; +} + + +# Interpolate environment variables in a directory (or colon-delimited list of directories) +sub _interpolate_env +{ + my $dir = shift; # Directory of interest + + return undef unless defined $dir; + + while ($dir =~ /\$\{?(\w*)[\}\/:]?/) { + my $name = $1; # Environment variable name + my $value = $ENV{$name}; # Environment variable value + unless (defined $value) { + carp "Unable to find environment variable $name"; + exit($PS_EXIT_SYS_ERROR); + } + $dir =~ s/\$\{?$name\}?/$value\//; + } + return $dir; +} + +# Lookup the metadata, checking the type is STR +sub _mdLookupStr +{ + my $mdc = shift; # Metadata config to look up + my $name = shift; # Name of item to look up + + unless (defined $mdc and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + # Iterate through the array of hashes + foreach my $item (@$mdc) { + if ($item->{name} eq $name) { + carp "$name within metadata is not of type STR.\n" unless $item->{type} eq "STR"; + return $item->{value}; + } + } + + carp "Unable to find $name within metadata.\n"; + return undef; +} + +# Lookup the metadata, checking the type is MD +sub _mdLookupMD +{ + my $mdc = shift; # Metadata config to look up + my $name = shift; # Name of item to look ip + + unless (defined $mdc and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + # Iterate through the array of hashes + foreach my $item (@$mdc) { + if ($item->{name} eq $name) { + carp "$name within metadata is not of type METADATA.\n" unless $item->{class} eq "metadata"; + return $item->{value}; + } + } + + carp "Unable to find $name within metadata.\n"; + return undef; +} + + +# Lookup the metadata, checking the type is MD; may be redirection +sub _mdLookupMDwithRedirect +{ + my $mdc = shift; # Metadata config to look up + my $name = shift; # Name of item to look ip + + unless (defined $mdc and defined $name) { + carp "Programming error"; + exit($PS_EXIT_PROG_ERROR); + } + + # Iterate through the array of hashes + foreach my $item (@$mdc) { + if ($item->{name} eq $name) { + if ($item->{class} eq "metadata") { + return $item->{value}; + } + if ($item->{class} eq "scalar" and $item->{type} eq "STR") { + # Redirect + return _mdLookupMDwithRedirect($mdc, $item->{value}); + } + carp "$name within metadata is not of type METADATA or STR.\n"; + return undef; + } + } + + carp "Unable to find $name within metadata.\n"; + return undef; +} + + +1; + +__END__; + Index: /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/List.pm =================================================================== --- /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/List.pm (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/List.pm (revision 12167) @@ -0,0 +1,46 @@ +# Copyright (c) 2006 Paul Price, Joshua Hoblitt +# +# $Id: List.pm,v 1.1 2006-08-12 04:26:12 price Exp $ + +package PS::IPP::Metadata::List; + +use strict; +use warnings FATAL => qw( all ); + +our $VERSION = '0.01'; + +use Carp qw( carp ); + +# Allow exporting of function +use base qw( Exporter ); +our @EXPORT_OK = qw( parse_md_list ); + +#$::RD_TRACE = 1; +#$::RD_HINT = 1; +#use Data::Dumper; + +# Given a parsed metadata, parse it into an array of hashes +sub parse_md_list { + my $md = shift; # Parsed metadata, from PS::IPP::Metadata::Config + + my @array; # The array of hashes, to be returned + foreach my $mdItem (@$md) { + if ($mdItem->{class} ne "metadata") { + carp "MD element ", $mdItem->{name}, " isn't of type METADATA --- ignored.\n"; + next; + } + my %hash; # Hash element + my $mdComponents = $mdItem->{value}; # Components of the metadata + foreach my $data (@$mdComponents) { + $hash{$data->{name}} = $data->{value}; + } + push @array, \%hash; + } + + return \@array; +} + +1; + +__END__; + Index: /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/Stats.pm =================================================================== --- /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/Stats.pm (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/lib/PS/IPP/Metadata/Stats.pm (revision 12167) @@ -0,0 +1,263 @@ +# Copyright (c) 2006 Paul Price, Joshua Hoblitt +# +# $Id: Stats.pm,v 1.13 2007-02-09 03:55:22 price Exp $ + +package PS::IPP::Metadata::Stats; + +use strict; +use warnings FATAL => qw( all ); + +our $VERSION = '0.02'; + +use Carp qw( carp ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); + +use base qw( Class::Accessor::Fast ); +__PACKAGE__->mk_accessors( qw( bg_mean bg_stdev bg_mean_stdev constants variables bg_data bg_stdev_data ) ); + +#$::RD_TRACE = 1; +#$::RD_HINT = 1; +use Data::Dumper; + +sub new { + my $class = shift; # Class name + my $constants = shift; # Array of values that should be constant through the FPA + my $variables = shift; # Array of values that may be variable through the FPA + + my $self = { bg_mean => undef, # Mean of the mean backgrounds + bg_stdev => undef, # Standard deviation of the mean backgrounds + bg_mean_stdev => undef, # Mean of the standard deviation of the backgrounds + constants => $constants, # Array of values that should be constant through the FPA + variables => $variables, # Array of values that may be variable through the FPA + bg_data => [], # Array of background values + bg_stdev_data => [],# Array of background standard deviations + data => {} # The data + }; + + # Populate object + foreach my $constant (@$constants) { + $self->{data}->{$constant} = { type => 'constant', # Type of value (constant/variable) + value => undef # The actual variable + }; + } + foreach my $variable (@$variables) { + $self->{data}->{$variable} = { type => 'variable', # Type of value (constant/variable) + data => [], # Array of data values + mean => undef, # Mean of data values + stdev => undef # Standard deviation of data values + }; + } + + # Bless and return object + bless $self, $class; + return $self; +} + +# Given a parsed metadata from ppStats, assemble summary statistics +sub parse { + my $self = shift; # Where we'll put the information + my $md = shift; # Parsed metadata, from PS::IPP::Metadata::Config + + # count of parse errors + my $errors = 0; + +# $self->_parse_megacam($md); + $self->_parse_braindead($md); + + # Check that we found everything for the constants + my $constants = $self->constants(); # Array of constants + if (defined $constants) { + foreach my $constant (@$constants) { + if (not defined $self->{data}->{$constant}->{value}) { + carp "Unable to find value for ", $constant, "\n"; + $errors++; + } + } + } + + # Get mean, stdev for the variables + my $variables = $self->variables(); # Array of variables + if (defined $variables) { + foreach my $variable (@$variables) { + my $info = $self->{data}->{$variable}; # The information about this particular variable + my $array = $info->{data}; # The array of values collected + if (scalar @$array == 0) { + carp "Unable to find any values for ", $variable, "\n"; + $errors++; + next; + } + + # Get statistics on the value + my $stats = Statistics::Descriptive::Sparse->new(); # Statistics calculator + $stats->add_data(@$array); + $info->{mean} = $stats->mean(); + $info->{stdev} = $stats->standard_deviation(); + } + } + + # Get mean, stdev, mean stdev for the background + if (scalar @{$self->{bg_data}} > 0) { + my $meanStats = Statistics::Descriptive::Sparse->new(); # Statistics for mean + $meanStats->add_data(@{$self->{bg_data}}); + $self->bg_mean($meanStats->mean()); + # XXX the stddev of a set of 1, appears to be a statistics undefined + # value, however that doesn't do us much go so I'm changing undef to 0 + $self->bg_mean_stdev($meanStats->standard_deviation() || 0); + } else { + $self->bg_mean(undef); + $self->bg_mean_stdev(undef); + } + if (scalar @{$self->{bg_stdev_data}} > 0) { + my $stdevStats = Statistics::Descriptive::Sparse->new(); # Statistics for standard deviation + my @variances; + foreach my $number (@{$self->{bg_stdev_data}}) { + push @variances, $number**2; + } + $stdevStats->add_data(@variances); + $self->bg_stdev( sqrt( $stdevStats->mean() ) ); + } else { + $self->bg_stdev(undef); + } + + if ($errors) { + carp "a total of $errors parse errors occured"; + return; + } + + return $self; +} + +sub _parse_megacam +{ + my ($self, $md) = @_; + + # Descend the FPA hierarchy + foreach my $fpaItem (@$md) { + if ($fpaItem->{class} eq "metadata") { + my $chipName = $fpaItem->{name}; # Name of chip + my $chipData = $fpaItem->{value}; # Chip-level data + foreach my $chipItem (@$chipData) { + if ($chipItem->{class} eq "metadata") { + my $cellName = $chipItem->{name}; # Name of cell + my $cellData = $chipItem->{value}; # Cell-level data + my $bgName; # Name of the value we measured + my $bgStdevName; # Name of the stdev we measured + foreach my $cellItem (@$cellData) { + if ($cellItem->{name} =~ /^(SAMPLE|ROBUST|FITTED|CLIPPED)_/) { + # It's a statistic of some sort + if ($cellItem->{name} =~ /_STDEV$/) { + if (defined $bgStdevName) { + carp "Ignoring duplicate background stdev (", $cellItem->{name}, "). ", + "Original is ", $bgStdevName, "\n"; + next; + } + $bgStdevName = $cellItem->{name}; + push @{$self->{bg_stdev_data}}, $cellItem->{value}; + } else { + if (defined $bgName) { + carp "Ignoring duplicate background value (", $cellItem->{name}, "). ", + "Original is ", $bgName, "\n"; + next; + } + $bgName = $cellItem->{name}; + push @{$self->{bg_data}}, $cellItem->{value}; + } + } else { + $self->_check_values($cellItem); + } + } + } else { + $self->_check_values($chipItem); + } + } + } else { + $self->_check_values($fpaItem); + } + } + + return $self; +} + +sub _parse_braindead +{ + my ($self, $md) = @_; + + # descend through the fpa + foreach my $entry (@$md) { + # recurse on nested metadata + if ($entry->{class} eq 'metadata') { + $self->_parse_braindead($entry->{value}); + } + + if ($entry->{name} =~ /^(SAMPLE|ROBUST|FITTED|CLIPPED)_/) { + # It's a statistic of some sort + if ($entry->{name} =~ /_STDEV$/) { + push @{$self->{bg_stdev_data}}, $entry->{value}; + } else { + push @{$self->{bg_data}}, $entry->{value}; + } + } else { + $self->_check_values($entry); + } + } + + return $self; +} + +# Private function to check a metadata item for things we're interested in +sub _check_values { + my $self = shift; + my $mdItem = shift; # Metadata item to check + + my $name = $mdItem->{name}; # Name of the item + my $value = $mdItem->{value}; # Value of the item + + my $data = $self->{data}; # The data + return if not defined $data->{$name}; # Not interested + my $type = $data->{$name}->{type}; # Type of the item: constant or variable + + if ($type eq 'constant') { + if (defined $data->{$name}->{value} && ($data->{$name}->{value} ne $value)) { + carp "Warning: different value for ", $name, " found: ", $data->{$name}->{value}, " (old) vs ", + $value, " (new). Ignoring new value.\n"; + return; + } + $data->{$name}->{value} = $value; + return; + } + + if ($type eq 'variable') { + my $array = $data->{$name}->{data}; # Array containing all the values + push @$array, $value; + return; + } + + carp "Unrecognised type (", $type, ") for value of ", $name, "\n"; + exit($PS_EXIT_PROG_ERROR); + return; +} + +# Return the data structure for a particular value, or the entire hash +sub data { + my $self = shift; + my $name = shift; # Name of data to return + + return $self->{data} if (not defined $name); + return $self->{data}->{$name}; +} + + +1; + +__END__; + Index: /branches/rel-1-1/PS-IPP-Config/t/00_distribution.t =================================================================== --- /branches/rel-1-1/PS-IPP-Config/t/00_distribution.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Config/t/00_distribution.t (revision 12167) @@ -0,0 +1,25 @@ +#!/usr/bin/env perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 00_distribution.t,v 1.1 2006-09-06 01:59:09 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ./t ); + +use Test::More; + +# example taken from Test::Distribution Pod + +BEGIN { + eval { + require Test::Distribution; + }; + if($@) { + plan skip_all => 'Test::Distribution not installed'; + } else { + import Test::Distribution; # not => qw( podcover ); + } +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/.cvsignore =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/.cvsignore (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Build +META.yml +Makefile +Makefile.PL +_build +blib Index: /branches/rel-1-1/PS-IPP-Metadata-Config/Build.PL =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/Build.PL (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/Build.PL (revision 12167) @@ -0,0 +1,43 @@ +use Module::Build; +# See perldoc Module::Build for details of how this works + +my $class = Module::Build->subclass(code => <<'EOF'); +use File::Copy; +use File::stat; + +my $grammar = "config_grammar.txt"; +my $parser = "lib/PS/IPP/Metadata/Parser.pm"; + +sub ACTION_code { + my $self = shift; + + if (!-e $parser || (stat($grammar)->mtime > stat($parser)->mtime)) { + system("perl -MParse::RecDescent - $grammar PS::IPP::Metadata::Parser") == 0 + or die "Parse::RecDecent code gen failed: $?"; + move("Parser.pm", $parser) or die "move failed: $!"; + } + + $self->SUPER::ACTION_code(@_); +} +EOF + +$class->new( + module_name => 'PS::IPP::Metadata::Config', + dist_version_from => 'lib/PS/IPP/Metadata/Config.pm', + author => 'Joshua Hoblitt ', + license => 'gpl', + create_makefile_pl => 'passthrough', + requires => { + 'Carp' => 0, + 'Class::Accessor::Fast' => '0.19', + 'Params::Validate' => '0.72', + 'DateTime::Format::ISO8601' => '0.0402', + 'Parse::RecDescent' => '1.94', + }, + recommends => { + 'Test::Distribution' => '1.22', + }, + script_files => [qw( + scripts/mdc-dump + )], +)->create_build_script; Index: /branches/rel-1-1/PS-IPP-Metadata-Config/Changes =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/Changes (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/Changes (revision 12167) @@ -0,0 +1,57 @@ +Revision history for Perl module PS::IPP::Metadata::Config + +1.00 Fri Feb 2 21:51:20 HST 2007 + - version bump only + +0.11 Thu Feb 1 15:42:28 HST 2007 + - add t/00_distribution.t + +0.10 Fri Nov 24 17:11:13 HST 2006 + - fix handling of NULL strings + - merge the 'time' production into the 'scalar' production for a ~20% speed boost + - remove support for "epoch format" times + - additional metadata structure tests + - merge metadata_name & metadata_end into metdata + - merge empty metdata case into main metadata production + - error check vector + - change type & vtype into regex alternations instead of rule alternations + +0.09 Thu Oct 26 16:16:28 HST 2006 + - fix a bug in Build.PL where a rebuilt grammar was not installed + - fix time tests that were dependent on MULTI times being broken + - fix MULTI time + - no longer require the 'Z' and the end of ISO8601 times + - implement NULL time support + +0.08 Wed Oct 11 16:09:26 HST 2006 + - add support for empty METADATAs + +0.07 Tue Oct 10 17:09:28 HST 2006 + - fix MULTI parsing of TYPEs + - minor test update + +0.06 Tue Oct 3 15:25:44 HST 2006 + - fix Build.PL script to not throw and error when $parser does not exist + - fix the trailing white space left in string values when followed by a + comment + +0.05 Mon Sep 25 12:06:22 HST 2006 + - fix a bug in the manifest + - fix Build.PL so the parser is only regenerated when the grammar has been + changed + +0.04 Mon Sep 25 11:50:20 HST 2006 + - add fractional second support to the ISO8601 format + +0.03 Fri Sep 22 14:27:14 HST 2006 + - add float nan/inf support + +0.02 Thu Aug 24 17:08:14 HST 2006 + - split grammar out of PS::IPP::Metadata::Config into grammar_config.txt + - precompile the parser as PS::IPP::Metadata::Pasrser + - change PS::IPP::Metadata::Config to use PS::IPP::Metadata::Pasrser + +0.01 Tue Feb 22 15:46:35 2005 + - original version; created by ExtUtils::ModuleMaker 0.32 + + Index: /branches/rel-1-1/PS-IPP-Metadata-Config/LICENSE =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/LICENSE (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/LICENSE (revision 12167) @@ -0,0 +1,260 @@ +The General Public License (GPL) +Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave, +Cambridge, MA 02139, USA. 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The Free Software Foundation may publish revised and/or new versions of the +General Public License from time to time. Such new versions will be similar in +spirit to the present version, but may differ in detail to address new problems or +concerns. + +Each version is given a distinguishing version number. If the Program specifies a +version number of this License which applies to it and "any later version", you +have the option of following the terms and conditions either of that version or of +any later version published by the Free Software Foundation. If the Program does +not specify a version number of this License, you may choose any version ever +published by the Free Software Foundation. + +10. If you wish to incorporate parts of the Program into other free programs +whose distribution conditions are different, write to the author to ask for +permission. For software which is copyrighted by the Free Software Foundation, +write to the Free Software Foundation; we sometimes make exceptions for this. +Our decision will be guided by the two goals of preserving the free status of all +derivatives of our free software and of promoting the sharing and reuse of +software generally. + +NO WARRANTY + +11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS +NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY +APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE +COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM +"AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR +IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE +ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE +PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, +YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR +CORRECTION. + +12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED +TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY +WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS +PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES +ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM +(INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING +RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY +OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS +BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. + +END OF TERMS AND CONDITIONS Index: /branches/rel-1-1/PS-IPP-Metadata-Config/MANIFEST =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/MANIFEST (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/MANIFEST (revision 12167) @@ -0,0 +1,21 @@ +Build.PL +Changes +LICENSE +MANIFEST +README +Todo +config_grammar.txt +docs/sdrs_grammar.txt +lib/PS/IPP/Metadata/Config.pm +lib/PS/IPP/Metadata/Config.pod +lib/PS/IPP/Metadata/Parser.pm +scripts/mdc-dump +t/00_distribution.t +t/01_load.t +t/02_examples.t +t/03_metadata.t +t/04_type.t +t/05_time.t +t/06_multi.t +t/07_floats.t +t/08_strings.t Index: /branches/rel-1-1/PS-IPP-Metadata-Config/README =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/README (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/README (revision 12167) @@ -0,0 +1,16 @@ +pod2text PS::IPP::Metadata::Config.pm > README + +If this is still here it means the programmer was too lazy to create the readme file. + +You can create it now by using the command shown above from this directory. + +At the very least you should be able to use this set of instructions +to install the module... + +perl Build.PL +./Build +./Build test +./Build install + + +If you are on a windows box you should use 'nmake' rather than 'make'. Index: /branches/rel-1-1/PS-IPP-Metadata-Config/Todo =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/Todo (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/Todo (revision 12167) @@ -0,0 +1,5 @@ +TODO list for Perl module PS::IPP::Metadata::Config + +- Nothing yet + + Index: /branches/rel-1-1/PS-IPP-Metadata-Config/config_grammar.txt =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/config_grammar.txt (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/config_grammar.txt (revision 12167) @@ -0,0 +1,354 @@ +# Copyright (c) 2005 Joshua Hoblitt +# +# $Id: config_grammar.txt,v 1.12 2006-11-25 02:29:05 jhoblitt Exp $ + +{ + use strict; + + use Carp qw( carp ); + use DateTime::Format::ISO8601; + + our @scope_stack; +} + +startrule: grammar eofile + { $item{grammar} } + +grammar: + statement(s) + { + $thisparser->{local} = pop @scope_stack; + [ grep $_->{class} !~ /comment_line/, @{$item{'statement(s)'}} ]; + } + +statement: + scalar + | comment_line + | metadata + | typedef + | typedef_declare + | multi_declare + | vector + | + +scalar: + name type comment(?) "\n" + { + $thisparser->{local}{name}{ $item{name} }++ + unless defined $thisparser->{local}{name}{ $item{name} }; + + $return = { + class => 'scalar', + name => $item{name}, + type => $item{type}, + value => $item[4], + }; + + $return->{comment} = $item{'comment(?)'}[0] + if $item{'comment(?)'}[0]; + + if ( defined $thisparser->{local}{name}{ $item{name} } ) { + $return->{multi}++ + if $thisparser->{local}{name}{ $item{name} } =~ /MULTI/; + } else { + $thisparser->{local}{name}{ $item{name} }++; + } + } + +vector: + vname vtype vvalue[ $item{vtype} ] comment(?) "\n" + { + $thisparser->{local}{name}{ $item{vname} }++ + unless defined $thisparser->{local}{name}{ $item{vname} }; + + $return = { + class => 'vector', + name => $item{vname}, + type => $item{vtype}, + value => $item{vvalue}, + comment => $item{comment} + }; + + $return->{comment} = $item{'comment(?)'}[0] + if $item{'comment(?)'}[0]; + } + | + +multi_declare: + name /MULTI/i comment(?) "\n" + { + if ( ! defined $thisparser->{local}{name}{ $item{name} } ) { + $thisparser->{local}{name}{ $item{name} } = "MULTI"; + $return = { class => 'comment_line' }; + } else { + $return = undef; + } + } + | + +# can't comit after the metadat_name here as it seems to break parsing empty +# metadatas +metadata: + name /METADATA/i comment(?) "\n" + + { push @scope_stack, $thisparser->{local}; $thisparser->{local} = {}; 1; } + grammar(?) + /END/i comment(?) "\n" + + { + if (defined(@{$item{'grammar(?)'}})) { + $return = { + class => 'metadata', + name => $item{name}, + value => @{$item{'grammar(?)'}}, + }; + } else { + $return = { + class => 'metadata', + name => $item{name}, + value => [], + }; + } + + $return->{comment} = $item[4][0] + if defined $item[4][0]; + + if ( defined $thisparser->{local}{name}{ $item{name} } ) { + $return->{multi}++ + if $thisparser->{local}{name}{ $item{name} } =~ /MULTI/; + } else { + $thisparser->{local}{name}{ $item{name} }++; + } + } + | + +comment_line: + comment(?) "\n" + {{ class => 'comment_line' }} + +typedef_declare: + 'TYPE' name name(s) comment(?) "\n" + { + if (defined $thisparser->{local}{typedef}{ $item{name} }) { + carp "refinition of TYPE $item{name}"; + $return = undef; + } else { + + my $type = { + class => 'typedef_declare', + name => $item{name}, + fields => $item{'name(s)'}, + length => scalar @{ $item{'name(s)'} }, + }; + + $thisparser->{local}{typedef}{ $item{name} } = $type; + + # don't return anything in the parse tree + $return = { class => 'comment_line' }; + } + } + | + +typedef: + name typedef_type word(s) comment(?) "\n" + { + my $type = $thisparser->{local}{typedef}{ $item{typedef_type} }; + + unless ( scalar @{ $item{'word(s)'} } == $type->{length} ) { + my $expect = $type->{length}; + my $got = scalar @{ $item{'word(s)'} }; + carp "\"$item{name} $item{typedef_type}\"" + . " does not have enough fields, epected: $expect, got: $got"; + $return = undef; + } else { + my @md; + my $i = 0; + foreach my $name ( @{ $type->{fields} } ) { + push @md, { + name => $name, + class => 'scalar', + type => 'STR', + value => $item{'word(s)'}[$i], + }; + + $i++; + } + + $return = { + class => 'metadata', + name => $item{name}, + value => \@md, + }; + + if ( defined $thisparser->{local}{name}{ $item{name} } ) { + $return->{multi}++ + if $thisparser->{local}{name}{ $item{name} } =~ /MULTI/; + } else { + $thisparser->{local}{name}{ $item{name} }++; + } + } + + } + | + + +typedef_type: name + { + if ( ! defined $thisparser->{local}{typedef}{ $item{name} } ) { + $return = undef; + } else { + $return = $item{name}; + } + } + +comment: + '#' to_end_of_line + { $item{to_end_of_line} } + +vname: + '@' name + { $item{name} } + +name: + /[a-z][.\w-]*/i + { + if ( $item[1] =~ /^(METADATA|END|TYPE)$/i ) { + $return = undef; + } else { + $return = $item[1]; + } + } + +# 'STR' seems to be the most common type, trying to match it first is a simple +# optimization. +type: + vtype + | /(STR + | STRING + | UTC + | UT1 + | TAI + | TT)/x + +vtype: + /(S8 + | S16 + | S32 + | S64 + | U8 + | U16 + | U32 + | U64 + | F32 + | F64 + | C32 + | C64 + | BOOL)/x + +S8: int +S16: int +S32: int +S64: int +U8 : int +U16: int +U32: int +U64: int +F32: float +F64: float +C32: float +C64: float +BOOL: bool +STR: string +STRING: string + +vvalue: + _vvalue[%arg](s) + { [ map { @$_ } @{$item[1]} ] } + +# backtracking optimization +_vvalue: + vector_sep(?) + { [ $item[1] ] } + +vector_sep: + /,|\s+/ + +int: + # $RE{num}{int} from Regexp::Common::number + /(?:(?:[+-]?)(?:[0-9]+))/ + + # based on $RE{num}{real} from Regexp::Common::number +float: + /(?:(?i)(?:[+-]?)(?:(?=[0-9]|[.])(?:[0-9]*)(?:(?:[.])(?:[0-9]{0,}))?)(?:(?:[Ee])(?:(?:[+-]?)(?:[0-9]+))|))/ + | inf + | nan + +inf: + /[+-]?inf(?:inity)?/i + { + if ($item[1] =~ /^-/) { + $return = "-inf"; + } else { + $return = "+inf"; + } + } +nan: + /[+-]?nan(?:\(\S*?\))?/i + { $return = "nan" } + +bool: + /[tf]/i + { $item[1] =~ /t/i ? 1 : 0 } + +string: + /(?:\S[^#\n]*)?[^#\n ]/ + # trim tailing the trailing white that's left when the string is + # followed by a comment (#) + { + $item[1] =~ s/\s*$//; + $return = $item[1]; + } + | NULL + +word: + /(?:[^#\s\n]+)/ + +to_end_of_line: + /[^\n]*/ + { + my $comment = $item[1]; + # remove leading whitespace + $comment =~ s/^\s+//; + # remove trailing whitespace + $comment =~ s/\s+$//; + + $return = $comment; + } + +UTC: + iso8601 + | NULL + +UT1: + iso8601 + | NULL + +TAI: + iso8601 + | NULL + +TT: + iso8601 + | NULL + +iso8601: + # based on code from DateTime::Format::ISO8601 + / \d{4} -?? \d\d -?? \d\d T?? \d\d :?? \d\d :?? \d\d (?:[\.,] (\d+))? Z?/x + { DateTime::Format::ISO8601->parse_datetime( $item[1] ) } + +NULL: + /NULL/ + { $return = "NULL" } + +eofile: + /^\z/ Index: /branches/rel-1-1/PS-IPP-Metadata-Config/docs/sdrs_grammar.txt =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/docs/sdrs_grammar.txt (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/docs/sdrs_grammar.txt (revision 12167) @@ -0,0 +1,144 @@ +startrule: statement(s) /\z/ + +statement: scalar | vector | multi_declare | comment + +comment: '#' end_of_line + +scalar: name type value comment | name type value + +vector: vname vtype vvalue comment | vname vtype vvalue + +multi_declare: name '*' end_of_line + +name: /[a-z][.\w]*/i + +vname: /\@[a-z][.\w]*/i + +type: + vtype | 'STR' | 'STRING' + +vtype: + 'S8' | + 'S16' | + 'S32' | + 'S64' | + 'U8' | + 'U16' | + 'U32' | + 'U64' | + 'F32' | + 'F64' | + 'C32' | + 'C64' | + 'BOOL' + +value: vector_value | string + +vvalue: vector_value vector_sep vvalue | vector_value vector_sep(?) + +vector_sep: ',' + +vector_value: float | int | bool + +int: integer_constant + +float: floating_constant + +bool: /[tf]\s+?/i + +string: + /\S[^#\n]*/ + +end_of_line: /[^\n]*/ + +### based on syntax found in "C A Reference Manual" + +# integer constants + +integer_constant: + decimal_constant integer_suffix(?) | + octal_constant integer_suffix(?) | + hexadecimal_constant integer_suffix(?) + +decimal_constant: + digit(2..) | + nonzero_digit + +octal_constant: + '0' octal_digit(s) | + '0' + +hexadecimal_constant: + hex_prefix hex_digit_sequence + +digit: + /[0-9]/ + +nonzero_digit: + /[1-9]/ + +octal_digit: + /[0-7]/ + +hex_digit: + /0_9a-f/i + +integer_suffix: + long_suffix unsigned_suffix(?) | + long_long_suffix unsigned_suffix(?) | + unsigned_suffix long_suffix(?) | + unsigned_suffix long_long_suffix(?) + +long_suffix: + /l/i + +long_long_suffix: + /ll/i + +unsigned_suffix: + /u/i + +# floating-point constants + +floating_constant: + decimal_floating_constant | + hexadecimal_floating_constant + +decimal_floating_constant: + digit_sequence exponent floating_suffix(?) | + dotted_digits exponent(?) floating_suffix(?) + +digit_sequence: + digit(s) + +dotted_digits: + digit_sequence '.' digit_sequence | + '.' digit_sequence | + digit_sequence '.' + +exponent: + /e/i sign_part digit_sequence + +sign_part: + /[+-]/ + +floating_suffix: + /[fl]/i + +hexadecimal_floating_constant: + hex_prefix dotted_hex_digits binary_exponent floating_suffix(?) | + hex_prefix hex_digit_sequence binary_exponent floating_suffix(?) + +hex_prefix: + /0x/i + +dotted_hex_digits: + hex_digit_sequence '.' hex_digit_sequence | + '.' hex_digit_sequence | + hex_digit_sequence '.' + +hex_digit_sequence: + hex_digit(s) + +binary_exponent: + /p/i sign_part(?) digit_sequence Index: /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/.cvsignore =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/.cvsignore (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/.cvsignore (revision 12167) @@ -0,0 +1,1 @@ +Parser.pm Index: /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pm =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pm (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pm (revision 12167) @@ -0,0 +1,137 @@ +# Copyright (c) 2005 Joshua Hoblitt +# +# $Id: Config.pm,v 1.31 2007-02-03 07:52:06 jhoblitt Exp $ + +package PS::IPP::Metadata::Config; + +use strict; +use warnings FATAL => qw( all ); + +our $VERSION = '1.00'; + +use Carp qw( carp ); +use PS::IPP::Metadata::Parser; + +use base qw( Class::Accessor::Fast ); +__PACKAGE__->mk_accessors( qw( overwrite ) ); + +#$::RD_TRACE = 1; +#$::RD_HINT = 1; +#use Data::Dumper; + +sub new { + my $class = shift; + + my $self = { _parser => PS::IPP::Metadata::Parser->new }; + + bless $self, $class; + + $self->overwrite( undef ); + + return $self; +} + +sub parse { + my ( $self, $metadata ) = @_; + + return undef if not defined $metadata; + return undef if $metadata =~ /^\s*$/; + + # remove any local data from a prevous run + # this is slightly faster then using Storable::dclone to clone a new parser + delete $self->{_parser}{local}; + + my $tree = $self->{_parser}->startrule( $metadata ); + + return undef unless defined $tree; + + # look for duplicate names, there should be none after processing the + # multi-symbols + $self->_merge_duplicates( $tree ) or return undef; + + # translate NULL values into perl undefs (Parse::RecDescent can't return + # undefs, args) + $self->_fix_nulls( $tree ) or return undef; + + #print Dumper($tree); + + return $tree; +} + +sub _merge_duplicates { + my ( $self, $tree ) = @_; + + # encountered names + my %names; + + # Iteratate through the parse tree looking for duplicate declarations and + # resolving them by discarding elements according to the value of + # 'overwrite'. + for (my $i = 0; $i < @{$tree}; $i++) { + my $elem = $tree->[$i]; + + # stop if the prevous pass removed the last element and called redo + last unless defined $elem; + + # recurse through nested metadata + if ( $elem->{class} eq "metadata" ) { + $self->_merge_duplicates( $elem->{value} ); + } + + # ignore elements with the "multi" flag + if ( defined $elem->{multi} ) { + delete $elem->{multi}; + next; + } + + if ( defined $names{ $elem->{name} } ) { + if ( $self->{overwrite} ) { + # remove the previous occurance + carp "duplicate variable name: ", $elem->{name} + , ", removed previous occurance\n"; + splice @{$tree}, $names{ $elem->{name} }, 1; + } else { + # remove the current occurance + carp "duplicate variable name: ", $elem->{name} + , ", removed\n"; + splice @{$tree}, $i, 1; + } + + # the list just got shorter by one element so we don't want to + # increment the cursor + redo; + } + + # add element name and location to record of previously seen names + $names{ $elem->{name} } = $i; + } + + return 1; +} + +sub _fix_nulls { + my ( $self, $tree ) = @_; + + # Iteratate through the parse tree looking for values of NULL and + # translating them into Perl undefs + for (my $i = 0; $i < @{$tree}; $i++) { + my $elem = $tree->[$i]; + + # recurse through nested metadata + if ( $elem->{class} eq "metadata" ) { + $self->_fix_nulls( $elem->{value} ); + } + + # force stringification of $elem->{value} -- specifically because you + # can't compare a DateTime object to a string value + if ("$elem->{value}" eq "NULL") { + $elem->{value} = undef; + } + } + + return 1; +} + +1; + +__END__ Index: /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pod =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pod (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/lib/PS/IPP/Metadata/Config.pod (revision 12167) @@ -0,0 +1,137 @@ +=pod + +=head1 NAME + +PS::IPP::Metadata::Config - Parses the psMetadata config language + +=head1 SYNOPSIS + + use PS::IPP::Metadata::Config; + + my $mdparser = PS::IPP::Metadata::Config->new; + $mdparser->overwrite( 1 ); + + my $config = $mdparser->parse( $example ); + +=head1 DESCRIPTION + +Parses the psMetadata configuration language into an AoH parse tree. + +=head1 USAGE + +=head2 Import Parameters + +This module accepts no arguments to it's C method and exports no +I. + +=head2 Methods + +=head3 Constructors + +=over 4 + +=item * new + +Accepts no parameters and returns a L object. + +=back + +=head3 Object Methods + +=over 4 + +=item * overwrite + +Controls the behavior of the parser when encountering keys that have been +defined more then once. A true value instructs the parser to discard all but +the latest declaration and a false value will preserve the first key parsed. +Accepts 0, 1, or undef. + +Defaults to undef. + +=item * parse + +Accepts a string. Returns an AoH structure on success or undef on failure. + +The format of the returned structure is as follows: + + [ + { + 'comment' => 'This is a comment', + 'value' => '123456789', + 'name' => 'Bob', + 'type' => 'U64', + 'class' => 'scalar' + }, + { + 'comment' => 'These are prime numbers', + 'value' => [ + '2', + '3' + ], + 'name' => '@primes', + 'type' => 'U8', + 'class' => 'vector' + }, + ... + ] + +=back + +=head1 DEVELOPER NOTES + +Currently, "multiple symbols" are translated into "STR" vectors as the +appropriate behavior isn't clear in the psLib SDRS. + +The parser does not have complete support for all of C99's floating point +constants or any support for complex numbers. + +None of the "extended" config language syntax, as defined in the SDRS, is +supported. + +=head1 REFERENCES + +=over 4 + +=item PSDC-430-007 + +Pan-STARRS PS-1 IPP Library Supplementary Design Requirements Specification +(SDRS): Section 5.3.4, "Configuration Files". + +=back + +=head1 CREDITS + +Just me, myself, and I. + +=head1 SUPPORT + +Please contact the author directly via e-mail. + +=head1 AUTHOR + +Joshua Hoblitt + +=head1 COPYRIGHT + +Copyright (C) 2005 Joshua Hoblitt. All rights reserved. + +This program is free software; you can redistribute it and/or modify it under +the terms of the GNU General Public License as published by the Free Software +Foundation; either version 2 of the License, or (at your option) any later +version. + +This program is distributed in the hope that it will be useful, but WITHOUT ANY +WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A +PARTICULAR PURPOSE. See the GNU General Public License for more details. + +You should have received a copy of the GNU General Public License along with +this program; if not, write to the Free Software Foundation, Inc., 59 Temple +Place - Suite 330, Boston, MA 02111-1307, USA. + +The full text of the license can be found in the LICENSE file included with +this module, or in the L Pod as supplied with Perl 5.8.1 and later. + +=head1 SEE ALSO + +=cut Index: /branches/rel-1-1/PS-IPP-Metadata-Config/scripts/mdc-dump =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/scripts/mdc-dump (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/scripts/mdc-dump (revision 12167) @@ -0,0 +1,146 @@ +#!/usr/bin/env perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: mdc-dump,v 1.2 2006-01-21 02:38:17 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use vars qw( $VERSION ); +$VERSION = '0.02'; + +use Data::Dumper qw( Dumper ); +use PS::IPP::Metadata::Config; + +use Getopt::Long qw( GetOptions :config auto_help auto_version ); +use Pod::Usage qw( pod2usage ); + +my ( $file, $overwrite, $verbose ); +GetOptions( + 'file=s' => \$file, + 'overwrite' => \$overwrite, + 'verbose' => \$verbose, +) || pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; + +# open STDIN if no file was specified +$file = '-' unless $file; + +if (defined $verbose) { + $::RD_TRACE = 1; + $::RD_HINT = 1; +} +my $md_parser = PS::IPP::Metadata::Config->new; + +if ( $overwrite ) { + $md_parser->overwrite( 1 ); +} else { + $md_parser->overwrite( 0 ); +} + +open( my $md, $file ) or die "can't open file: $!"; + +my $data = $md_parser->parse( do { local $/; <$md> } ); + +close( $md ); + +if ( $data ) { + print Dumper( $data ); +} else { + warn "Invalid Syntax, Parse failed.\n"; + exit 1; +} + +__END__ + +=pod + +=head1 NAME + +mddump.pl - validate psMetadataConfig files + +=head1 SYNOPSIS + + mddump.pl [--overwrite] [--verbose] --file + + or + + cat | mddump.pl [--overwrite] [--verbose] + + or + + mddump.pl [--help | -h | -? | --version] + +=head1 DESCRIPTION + +Parses psMetadataConfig formatted text either from a file or STDIN and prints a +Perl data structure that represents the metadata. + +=head1 OPTIONS + +=over 4 + +=item * --file | -f + +Accepts the name of a file to use as input. If this option is omitted the +STDIN will be read from. + +=item * --overwrite | -o + +A flag that turns L's overwrite behavior on. +Overwrite is always off unless this flag is specified. + +=item * --verbose | -v + +A flag that turns L's C and C tracing +flags. verbose is always off unless this flag is specified. + +=item * --help | -h | -? + +Prints usage information. + +=item * --version + +Prints the version. + +=back + +=head1 CREDITS + +Just me, myself, and I. + +=head1 SUPPORT + +Please contact the author directly via e-mail. + +=head1 AUTHOR + +Joshua Hoblitt + +=head1 COPYRIGHT + +Copyright (C) 2004 Joshua Hoblitt. All rights reserved. + +This program is free software; you can redistribute it and/or modify it under +the terms of the GNU General Public License as published by the Free Software +Foundation; either version 2 of the License, or (at your option) any later +version. + +This program is distributed in the hope that it will be useful, but WITHOUT ANY +WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A +PARTICULAR PURPOSE. See the GNU General Public License for more details. + +You should have received a copy of the GNU General Public License along with +this program; if not, write to the Free Software Foundation, Inc., 59 Temple +Place - Suite 330, Boston, MA 02111-1307, USA. + +The full text of the license can be found in the L Pod as supplied +with Perl 5.8.1 and later. + +=head1 SEE ALSO + +L + +=cut Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/00_distribution.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/00_distribution.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/00_distribution.t (revision 12167) @@ -0,0 +1,25 @@ +#!/usr/bin/env perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 00_distribution.t,v 1.1 2007-01-30 01:30:48 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ./t ); + +use Test::More; + +# example taken from Test::Distribution Pod + +BEGIN { + eval { + require Test::Distribution; + }; + if($@) { + plan skip_all => 'Test::Distribution not installed'; + } else { + import Test::Distribution not => qw( podcover ); + } +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/01_load.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/01_load.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/01_load.t (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 01_load.t,v 1.1.1.1 2005-03-01 03:38:45 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +use Test::More tests => 1; + +BEGIN { use_ok( 'PS::IPP::Metadata::Config' ); } Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/02_examples.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/02_examples.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/02_examples.t (revision 12167) @@ -0,0 +1,385 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 02_examples.t,v 1.5 2006-07-12 02:49:53 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 9; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ + my $config = $config_parser->parse(undef); + is($config, undef, "parsing undef returns undef"); +} + +{ + my $config = $config_parser->parse(''); + is($config, undef, "parsing an empty string returns undef"); +} + +{ + my $config = $config_parser->parse("\n\n\n\n\n"); + is($config, undef, "parsing an empty string returns undef"); +} + +{ +my $example = q{ +Double F64 1.23456789 # This is a comment +Float F32 0.98765#This is a comment too +String STR This is the string that forms the value #comment + + # This is a comment line and is to be ignored +boolean BOOL T # The value of `boolean' is `true' + +@primes U8 2,3 5 7,11,13 17 # These are prime numbers + +comment MULTI # The rest of this line is ignored, but `comment' is set to be non-unique +comment STR This +comment STR is +comment STR a +comment STR non-unique +comment STR key +Float F64 1.23456 # This generates a warning, and, if `overwrite' is `false', is ignored +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "SDRS example parsed"); + + my $tree = [ + { + name => 'Double', + class => 'scalar', + type => 'F64', + value => '1.23456789', + comment => 'This is a comment', + }, + { + name => 'Float', + class => 'scalar', + type => 'F32', + value => '0.98765', + comment => 'This is a comment too', + }, + { + name => 'String', + class => 'scalar', + type => 'STR', + value => 'This is the string that forms the value', + comment => 'comment', + }, + { + name => 'boolean', + class => 'scalar', + type => 'BOOL', + value => 1, + comment => q{The value of `boolean' is `true'}, + }, + { + name => 'primes', + class => 'vector', + type => 'U8', + value => [qw( 2 3 5 7 11 13 17 )], + comment => 'These are prime numbers', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'This', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'is', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'a', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'non-unique', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'key', + }, + ]; + + is_deeply( $config, $tree, "SDRS example structure, no overwrite" ); +} + +{ +my $example = q{ +Double F64 1.23456789 # This is a comment +Float F32 0.98765#This is a comment too +String STR This is the string that forms the value #comment + + # This is a comment line and is to be ignored +boolean BOOL T # The value of `boolean' is `true' + +@primes U8 2,3 5 7,11,13 17 # These are prime numbers + +comment MULTI # The rest of this line is ignored, but `comment' is set to be non-unique +comment STR This +comment STR is +comment STR a +comment STR non-unique +comment STR key +Float F64 1.23456 # This generates a warning, and, if `overwrite' is `false', is ignored +}; + $config_parser->overwrite( 1 ); + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "SDRS example parsed"); + + my $tree = [ + { + name => 'Double', + class => 'scalar', + type => 'F64', + value => '1.23456789', + comment => 'This is a comment', + }, + { + name => 'String', + class => 'scalar', + type => 'STR', + value => 'This is the string that forms the value', + comment => 'comment', + }, + { + name => 'boolean', + class => 'scalar', + type => 'BOOL', + value => 1, + comment => q{The value of `boolean' is `true'}, + }, + { + name => 'primes', + class => 'vector', + type => 'U8', + value => [qw( 2 3 5 7 11 13 17 )], + comment => 'These are prime numbers', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'This', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'is', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'a', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'non-unique', + }, + { + name => 'comment', + class => 'scalar', + type => 'STR', + value => 'key', + }, + { + name => 'Float', + class => 'scalar', + type => 'F64', + value => '1.23456', + comment => q{This generates a warning, and, if `overwrite' is `false', is ignored}, + }, + ]; + + is_deeply( $config, $tree, "SDRS example structure, with overwrite" ); +} + +{ +my $example = q{ +# these are examples of camera definition variables: +# skyprobe +NCELL S32 1 +NCHIP S32 1 +# FILENAME EXTNAME REGION CHIP BIASSEC +CELL.00 STR %f00.%x PHU [0,0:0,0] CHIP.00 [0,0:0,0] + +# megacam-raw +NCELL S32 72 +NCHIP S32 36 +# FILENAME EXTNAME DATASEC CHIP BIASSEC +CELL.00 STR %f.%x AMP00 [0,0:0,0] CHIP.00 BIASSEC +CELL.01 STR %f.%x AMP01 [0,0:0,0] CHIP.00 [2100,2110:0,4096] +CELL.02 STR %f.%x AMP02 [0,0:0,0] CHIP.01 [0,0:0,0] +CELL.03 STR %f.%x AMP03 [0,0:0,0] CHIP.01 [0,0:0,0] + +# megacam-splice +NCELL S32 72 +NCHIP S32 36 +# FILENAME EXTNAME REGION CHIP BIASSEC TRIMSEC +CELL.00 STR %f.%x CCD00 ASEC-00 CHIP.00 BSEC-00 DSEC-00 +CELL.01 STR %f.%x CCD00 ASEC-01 CHIP.00 BSEC-01 DSEC-01 +CELL.02 STR %f.%x CCD01 ASEC-00 CHIP.01 BSEC-00 DSEC-00 +CELL.03 STR %f.%x CCD01 ASEC-01 CHIP.01 BSEC-01 DSEC-01 + +# cfh12k-split +NCELL S32 12 +NCHIP S32 12 +# FILENAME EXTNAME REGION CHIP BIASSEC +CELL.00 STR %f/%f00.%x PHU [0,0:0,0] CHIP.00 [0,0:0,0] +CELL.01 STR %f/%f01.%x PHU [0,0:0,0] CHIP.01 [0,0:0,0] +CELL.02 STR %f/%f02.%x PHU [0,0:0,0] CHIP.02 [0,0:0,0] + +# cfh12k-mef +NCELL S32 12 +NCHIP S32 12 +# FILENAME EXTNAME REGION CHIP BIASSEC +CELL.00 STR %f.%x CHIP00 [0,0:0,0] CHIP.00 [0,0:0,0] +CELL.01 STR %f.%x CHIP01 [0,0:0,0] CHIP.01 [0,0:0,0] +CELL.02 STR %f.%x CHIP02 [0,0:0,0] CHIP.02 [0,0:0,0] + +#- REGION can be defined by a header keyword in IRAF format or by a explicit IRAF format +#- what is default for NAXIS1,2 for IRAF format? +#- Nreadout is always NAXIS3? + +# recipe file: +# this makes the assumption that, for a given camera, all chips & +# cells have the same recipe. this is probably a good start, but may +# not cut it in general. eg, it is already clear that for + +# recipe file must be a function of time and camera. +# + +# BIAS: +BIAS.IMAGE STR NONE +BIAS.IMAGE STR FILE:bias.fits +BIAS.IMAGE STR DB:BEST +BIAS.IMAGE STR DB:CLOSE + +BIAS.OVERSCAN STR HEADER:BIASSEC +BIAS.OVERSCAN STR RECIPE:[0,0:0,0] +BIAS.OVERSCAN STR NONE + +BIAS.OVERSCAN.STATS STR MEDIAN +BIAS.OVERSCAN.STATS STR MEAN + +BIAS.OVERSCAN.FIT STR SPLINE +BIAS.OVERSCAN.FIT.NPTS S32 5 + +BIAS.OVERSCAN.FIT STR POLYNOMIAL +BIAS.OVERSCAN.FIT.ORDER S32 3 +BIAS.OVERSCAN.FIT.NBIN S32 5 +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "GENE example"); +} + +{ +my $example = q{ +# The raw MegaCam data comes off the telescope with each of the chips stored in extensions of a MEF file. + +# How to identify this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam + EXTEND BOOL T + NEXTEND S32 72 +END + +# How to read this data +PHU STR FPA # The FITS file represents an entire FPA +EXTENSIONS STR CELLS # The extensions represent cells +EXTENSION_KEY STR EXTNAME # You get the extensions by looking at the EXTNAME header +IDENTIFIER STR OBSID # We identify the observation by the observation Id in the header + +# What's in the FITS file? +CONTENTS METADATA + TYPE CELL CHIP CELLTYPE + # Extension name, chip + amp00 CELL ccd00 science + amp01 CELL ccd00 science + amp02 CELL ccd01 science + amp03 CELL ccd01 science + guide CELL guide guide # A guide CCD thrown in, just for fun +END + +# Specify the cell data +CELLS METADATA + science METADATA # A science CCD + TYPE LOCATION SOURCE VALUE + BIASSEC LOCATION VALUE [1:10,1:4096];[1035:1084,1:4096] + TRIMSEC LOCATION VALUE [11:1034,1:4096] + # BIASSEC LOCATION HEADER BIASSEC + # TRIMSEC LOCATION HEADER TRIMSEC + END + guide METADATA # A guide CCD + TYPE LOCATION SOURCE VALUE + BIASSEC LOCATION VALUE [1:10,1:1024];[1035:1084,1:1024] + TRIMSEC LOCATION VALUE [11:1034,1:1024] + # BIASSEC LOCATION HEADER BIASSEC + # TRIMSEC LOCATION HEADER TRIMSEC + END + +END + + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + AIRMASS STR AIRMASS + EXPTIME STR EXPOSURE + DARKTIME STR EXPOSURE # No specific darktime header; use exposure time + FILTER STR FILTER + DATE-OBS STR DATE-OBS + TIME-OBS STR TIME-OBS + POSANGLE STR POSANG + RA STR OBJ-RA + DEC STR OBJ-DEC +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + RADECSYS STR ICRS +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS + GAIN dbEntry Camera gain chipId,cellId CHIP,CELL + READNOISE dbEntry Camera readNoise chipId,cellId CHIP,CELL + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). + +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "Paul/megacam example"); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/03_metadata.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/03_metadata.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/03_metadata.t (revision 12167) @@ -0,0 +1,439 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 03_metadata.t,v 1.6 2006-11-25 01:15:47 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 13; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ +my $example = q{ +CELL METADATA + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 24 +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "SDRS example parsed"); + + my $tree = [ + { + name => 'CELL', + class => 'metadata', + value => [ + { + name => 'EXTNAME', + class => 'scalar', + type => 'STR', + value => 'CCD00' + }, + { + name => 'BIASSEC', + class => 'scalar', + type => 'STR', + value => 'BSEC-00' + }, + { + name => 'CHIP', + class => 'scalar', + type => 'STR', + value => 'CHIP.00' + }, + { + name => 'NCELL', + class => 'scalar', + type => 'S32', + value => 24, + }, + ], + } + ]; + + is_deeply( $config, $tree, "SDRS example structure"); +} + +{ +my $example = q{ +CELL METADATA # foo + EXTNAME STR CCD00 # bar + BIASSEC STR BSEC-00 # baz + CHIP STR CHIP.00 # zab + NCELL S32 24 # rab +END # oof +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "SDRS example + comments parsed"); + + my $tree = [ + { + name => 'CELL', + class => 'metadata', + value => [ + { + name => 'EXTNAME', + class => 'scalar', + type => 'STR', + value => 'CCD00', + comment => 'bar', + }, + { + name => 'BIASSEC', + class => 'scalar', + type => 'STR', + value => 'BSEC-00', + comment => 'baz', + }, + { + name => 'CHIP', + class => 'scalar', + type => 'STR', + value => 'CHIP.00', + comment => 'zab', + }, + { + name => 'NCELL', + class => 'scalar', + type => 'S32', + value => 24, + comment => 'rab', + }, + ], + comment => 'foo', + } + ]; + + is_deeply( $config, $tree, "SDRS example + comments structure"); +} + +{ +my $example = q{ +CELL METADATA + FOO METADATA + BAR STR BAZ + PING STR PONG + END + + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 24 +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "nested metadata parsed"); + + my $tree = [ + { + name => 'CELL', + class => 'metadata', + value => [ + { + name => 'FOO', + class => 'metadata', + value => [ + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'EXTNAME', + class => 'scalar', + type => 'STR', + value => 'CCD00', + }, + { + name => 'BIASSEC', + class => 'scalar', + type => 'STR', + value => 'BSEC-00', + }, + { + name => 'CHIP', + class => 'scalar', + type => 'STR', + value => 'CHIP.00', + }, + { + name => 'NCELL', + class => 'scalar', + type => 'S32', + value => 24, + }, + ], + } + ]; + + is_deeply( $config, $tree, "nested metadata structure"); +} + +{ +my $example = q{ +FOO1 METADATA + FOO2 METADATA + FOO3 METADATA + FOO4 METADATA + FOO5 METADATA + FOO6 METADATA + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "deeply nested metadata"); + + my $tree = [ + { + name => 'FOO1', + class => 'metadata', + value => [ + { + name => 'FOO2', + class => 'metadata', + value => [ + { + name => 'FOO3', + class => 'metadata', + value => [ + { + name => 'FOO4', + class => 'metadata', + value => [ + { + name => 'FOO5', + class => 'metadata', + value => [ + { + name => 'FOO6', + class => 'metadata', + value => [ + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + { + name => 'BAR', + class => 'scalar', + type => 'STR', + value => 'BAZ', + }, + { + name => 'PING', + class => 'scalar', + type => 'STR', + value => 'PONG', + }, + ], + }, + ]; + + is_deeply( $config, $tree, "nested metadata structure"); +} + +{ +my $example = q{ +FOO1 METADATA + BAR STR BAZ + PING STR PONG + FOO2 METADATA + BAR STR BAZ + PING STR PONG + FOO3 METADATA + BAR STR BAZ + PING STR PONG + FOO4 METADATA + BAR STR BAZ + PING STR PONG + FOO5 METADATA + BAR STR BAZ + PING STR PONG + FOO6 METADATA + BAR STR BAZ + PING STR PONG + END + END + END + END + END +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "deeply nested metadata"); +} + +{ +my $example = q{ +FOO1 METADATA + BAR STR BAZ + FOO2 METADATA + BAR STR BAZ + FOO3 METADATA + BAR STR BAZ + FOO4 METADATA + BAR STR BAZ + FOO5 METADATA + BAR STR BAZ + FOO6 METADATA + BAR STR BAZ + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "deeply nested metadata"); +} + +{ +my $example = q{ +FOO1 METADATA + FOO2 METADATA + BAR STR BAZ + PING STR PONG + END + FOO3 METADATA + BAR STR BAZ + PING STR PONG + END +END +}; + my $config = $config_parser->parse( $example ); + + ok( defined( $config ), "two metadata at the same depth"); +} + +{ +my $example = q{ +foo METADATA +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + + ok( defined( $config ), "empty METADATA"); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [], + }, + ]; + + is_deeply( $config, $tree, "empty METADATA structure"); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/04_type.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/04_type.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/04_type.t (revision 12167) @@ -0,0 +1,123 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 04_type.t,v 1.1 2005-03-23 01:53:55 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 9; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +}; + my $config = $config_parser->parse( $example ); + ok( defined( $config ), "basic TYPE"); +} + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP # comment +CELL.00 CELL CCD00 BSEC-00 CHIP.00 # foo +CELL.01 CELL CCD01 BSEC-01 CHIP.00 # +}; + my $config = $config_parser->parse( $example ); + ok( defined( $config ), "TYPE with comments"); +} + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +FOO METADATA + TYPE CELL EXTNAME BIASSEC + CELL.00 CELL CCD00 BSEC-00 + CELL.01 CELL CCD01 BSEC-01 + FOO METADATA + TYPE CELL EXTNAME + CELL.00 CELL CCD00 + CELL.01 CELL CCD01 + END +END +}; + my $config = $config_parser->parse( $example ); + ok( defined( $config ), "TYPE not visible in lower scopes"); +} + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP +FOO METADATA + CELL.00 CELL CCD00 BSEC-00 CHIP.00 +END +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "TYPE not in scope"); +} + +{ +my $example = q{ +FOO METADATA + TYPE CELL EXTNAME BIASSEC CHIP +END +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "TYPE not in scope"); +} + +{ +my $example = q{ +FOO METADATA + TYPE CELL EXTNAME BIASSEC CHIP +END +BAR METADATA + CELL.00 CELL CCD00 BSEC-00 CHIP.00 +END +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "TYPE not in scope"); +} + + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP +CELL.00 CELL CCD00 BSEC-00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "TYPE with missing parameters"); +} + +{ +my $example = q{ +TYPE CELL EXTNAME BIASSEC CHIP +TYPE CELL EXTNAME BIASSEC CHIP +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "TYPE redefinition"); +} + +{ +my $example = q{ +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +}; + my $config = $config_parser->parse( $example ); + ok( !defined( $config ), "missing TYPE declaration"); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/05_time.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/05_time.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/05_time.t (revision 12167) @@ -0,0 +1,283 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 05_time.t,v 1.5 2006-11-22 23:54:50 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 15; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ +my $example =<parse( $example ); + ok( defined( $config ), "NULL times parsed"); + + my $tree = [ + { + name => 'mytime', + class => 'scalar', + type => 'UTC', + value => undef, + }, + { + name => 'mytime', + class => 'scalar', + type => 'UT1', + value => undef, + }, + { + name => 'mytime', + class => 'scalar', + type => 'TAI', + value => undef, + }, + { + name => 'mytime', + class => 'scalar', + type => 'TT', + value => undef, + }, + ]; + + is_deeply( $config, $tree, "NULL times structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "NULL times with comments parsed"); + + my $tree = [ + { + name => 'mytime', + class => 'scalar', + type => 'UTC', + value => undef, + comment => 'comment', + }, + { + name => 'mytime', + class => 'scalar', + type => 'UT1', + value => undef, + comment => 'comment', + }, + { + name => 'mytime', + class => 'scalar', + type => 'TAI', + value => undef, + comment => 'comment', + }, + { + name => 'mytime', + class => 'scalar', + type => 'TT', + value => undef, + comment => 'comment', + }, + ]; + + is_deeply( $config, $tree, "NULL times with comments structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "basic ISO8601 parsed"); + + my $tree = [ + { + name => 'recently', + class => 'scalar', + type => 'UTC', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'UT1', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'TAI', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'TT', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + ]; + + is_deeply( $config, $tree, "basic ISO8601 structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "basic ISO8601 w/Z parsed"); + + my $tree = [ + { + name => 'recently', + class => 'scalar', + type => 'UTC', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'UT1', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'TAI', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + { + name => 'recently', + class => 'scalar', + type => 'TT', + value => DateTime::Format::ISO8601->parse_datetime("2005-03-18T16:05:00Z"), + }, + ]; + + is_deeply( $config, $tree, "basic ISO8601 w/Z structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "basic IS8601 with fractional seconds parsed"); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "ISO8601 with comments parsed"); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "ISO8601 with comments and fractional seconds parsed"); +} + +#diag("epoch time format maybe deprecated"); +# +#{ +#my $example =<parse( $example ); +# ok( defined( $config ), "basic epoch time parsed"); +#} +# +#{ +#my $example =<parse( $example ); +# ok( defined( $config ), "epoch time with comments parsed"); +#} + +{ +my $example =<parse( $example ); + ok( !defined( $config ), "bad format"); +} + +{ +my $example =<parse( $example ); + ok( !defined( $config ), "bad format"); +} + +{ +my $example =<parse( $example ); + ok( !defined( $config ), "bad format"); +} + +{ +my $example =<parse( $example ); + ok( !defined( $config ), "bad format"); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/06_multi.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/06_multi.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/06_multi.t (revision 12167) @@ -0,0 +1,346 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 06_multi.t,v 1.8 2006-10-11 02:49:05 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 15; +use PS::IPP::Metadata::Config; + +{ +my $example = q{ +foo MULTI +foo S8 -1 +foo STR bar baz +foo BOOL T +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( defined( $config ), "basic MULTI"); +} + +{ +my $example = q{ +foo MULTI # foo +foo S8 -1 # bar +foo STR bar baz # baz +foo BOOL T # +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( defined( $config ), "MULTI with comments"); +} + +{ +my $example = q{ +foo MULTI +foo S8 -1 +foo STR bar baz +foo BOOL T +bar METADATA + foo MULTI + foo S8 -1 + foo STR bar baz + foo BOOL T +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( defined( $config ), "MULTI not visible in lower scopes"); +} + +{ +my $example = q{ +foo MULTI +foo METADATA + bar BOOL T +END +foo METADATA + bar BOOL T +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [{ + name => 'bar', + class => 'scalar', + type => 'BOOL', + value => 1, + }], + }, + { + name => 'foo', + class => 'metadata', + value => [{ + name => 'bar', + class => 'scalar', + type => 'BOOL', + value => 1, + }], + }, + ]; + + is_deeply( $config, $tree, "MULTI METADATA structure, declared" ); +} + +{ +my $example = q{ +foo METADATA + bar BOOL T +END +foo METADATA + bar BOOL T +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [{ + name => 'bar', + class => 'scalar', + type => 'BOOL', + value => 1, + }], + }, + ]; + + is_deeply( $config, $tree, "MULTI METADATA structure, not declared" ); +} + +{ +my $example = q{ +foo MULTI +TYPE bar a b c +foo bar x y z +foo bar x y z +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( defined( $config ), "MULTI TYPE"); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [ + { + name => 'a', + class => 'scalar', + type => 'STR', + value => 'x', + }, + { + name => 'b', + class => 'scalar', + type => 'STR', + value => 'y', + }, + { + name => 'c', + class => 'scalar', + type => 'STR', + value => 'z', + }, + ], + }, + { + name => 'foo', + class => 'metadata', + value => [ + { + name => 'a', + class => 'scalar', + type => 'STR', + value => 'x', + }, + { + name => 'b', + class => 'scalar', + type => 'STR', + value => 'y', + }, + { + name => 'c', + class => 'scalar', + type => 'STR', + value => 'z', + }, + ], + }, + ]; + + is_deeply( $config, $tree, "MULTI TYPE structure, not declared" ); +} + +{ +my $example = q{ +TYPE bar a b c +foo MULTI +foo bar x y z +foo bar x y z +}; + + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( defined( $config ), "MULTI TYPE"); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [ + { + name => 'a', + class => 'scalar', + type => 'STR', + value => 'x', + }, + { + name => 'b', + class => 'scalar', + type => 'STR', + value => 'y', + }, + { + name => 'c', + class => 'scalar', + type => 'STR', + value => 'z', + }, + ], + }, + { + name => 'foo', + class => 'metadata', + value => [ + { + name => 'a', + class => 'scalar', + type => 'STR', + value => 'x', + }, + { + name => 'b', + class => 'scalar', + type => 'STR', + value => 'y', + }, + { + name => 'c', + class => 'scalar', + type => 'STR', + value => 'z', + }, + ], + }, + ]; + + is_deeply( $config, $tree, "MULTI TYPE structure, not declared" ); +} + +{ +my $example = q{ +TYPE bar a b c +foo bar x y z +foo bar x y z +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + + my $tree = [ + { + name => 'foo', + class => 'metadata', + value => [ + { + name => 'a', + class => 'scalar', + type => 'STR', + value => 'x', + }, + { + name => 'b', + class => 'scalar', + type => 'STR', + value => 'y', + }, + { + name => 'c', + class => 'scalar', + type => 'STR', + value => 'z', + }, + ], + }, + ]; + + is_deeply( $config, $tree, "MULTI TYPE structure, not declared" ); +} + +{ +my $example = q{ +foo MULTI +bar METADATA + foo S8 -1 + foo STR bar baz +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + # ok because of overwrite + ok( defined( $config ), "MULTI not in scope"); +} + +{ +my $example = q{ +bar METADATA + foo MULTI +END +foo S8 -1 +foo STR bar baz +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + # ok because of overwrite + ok( defined( $config ), "MULTI not in scope"); +} + +{ +my $example = q{ +bar METADATA + foo MULTI +END +baz METADATA + foo S8 -1 +END +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + # ok because of overwrite + ok( defined( $config ), "MULTI not in scope"); +} + +{ +my $example = q{ +foo MULTI +foo MULTI +foo S8 -1 +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + ok( !defined( $config ), "MULTI redeclaration"); +} + +{ +my $example = q{ +foo S8 -1 +foo STR bar baz +}; + my $config = PS::IPP::Metadata::Config->new->parse( $example ); + # ok because of overwrite + ok( defined( $config ), "missing MULTI declaration"); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/07_floats.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/07_floats.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/07_floats.t (revision 12167) @@ -0,0 +1,209 @@ +#!/usr/bin/perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 07_floats.t,v 1.1 2006-09-23 00:26:50 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 12; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F32 nans parsed"); + + my $tree = [ + { + name => 'mynan', + class => 'scalar', + type => 'F32', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F32', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F32', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F32', + value => 'nan', + }, + ]; + + is_deeply( $config, $tree, "F32 nans structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F64 nans parsed"); + + my $tree = [ + { + name => 'mynan', + class => 'scalar', + type => 'F64', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F64', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F64', + value => 'nan', + }, + { + name => 'mynan', + class => 'scalar', + type => 'F64', + value => 'nan', + }, + ]; + + is_deeply( $config, $tree, "F64 nans structure" ); +} + +my $inftree = [ + # inf + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '+inf', + }, + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '+inf', + }, + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '-inf', + }, + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '+inf', + }, + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '+inf', + }, + { + name => 'myinf', + class => 'scalar', + type => 'F32', + value => '-inf', + }, +]; + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F32 infs parsed"); + + is_deeply( $config, $inftree, "F32 infs structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F32 InFs parsed"); + + is_deeply( $config, $inftree, "F32 InFs structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F32 iNfs parsed"); + + is_deeply( $config, $inftree, "F32 iNfs structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "F32 INFs parsed"); + + is_deeply( $config, $inftree, "F32 INFs structure" ); +} Index: /branches/rel-1-1/PS-IPP-Metadata-Config/t/08_strings.t =================================================================== --- /branches/rel-1-1/PS-IPP-Metadata-Config/t/08_strings.t (revision 12167) +++ /branches/rel-1-1/PS-IPP-Metadata-Config/t/08_strings.t (revision 12167) @@ -0,0 +1,75 @@ +#!/usr/bin/perl + +# Copyright (C) 2006 Joshua Hoblitt +# +# $Id: 08_strings.t,v 1.2 2006-11-04 01:25:32 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ); + +#$::RD_TRACE = 1; + +use Test::More tests => 4; +use PS::IPP::Metadata::Config; + +my $config_parser = PS::IPP::Metadata::Config->new; + +{ +my $example =<parse( $example ); + ok( defined( $config ), "strs parsed"); + + my $tree = [ + { + name => 'mystr', + class => 'scalar', + type => 'STR', + value => 'somevalue', + }, + { + name => 'mystr', + class => 'scalar', + type => 'STR', + value => 'somevaluebeforeacomment', + comment => 'some comment', + }, + ]; + + is_deeply( $config, $tree, "str structure" ); +} + +{ +my $example =<parse( $example ); + ok( defined( $config ), "NULL strs parsed"); + + my $tree = [ + { + name => 'mystr', + class => 'scalar', + type => 'STR', + value => undef, + }, + { + name => 'mystr', + class => 'scalar', + type => 'STR', + value => undef, + comment => 'some comment', + }, + ]; + + is_deeply( $config, $tree, "NULL str structure" ); +} Index: /branches/rel-1-1/ippMonitor/.cvsignore =================================================================== --- /branches/rel-1-1/ippMonitor/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippMonitor/.cvsignore (revision 12167) @@ -0,0 +1,1 @@ +src Index: /branches/rel-1-1/ippMonitor/Makefile =================================================================== --- /branches/rel-1-1/ippMonitor/Makefile (revision 12167) +++ /branches/rel-1-1/ippMonitor/Makefile (revision 12167) @@ -0,0 +1,174 @@ +default: php +help: + @echo "USAGE: make php" + +SRC = src +DEF = def +RAW = raw +DESTBIN = /var/www/kiawe/ippMonitor + +RAWSRC = \ +$(DESTBIN)/ipp.css \ +$(DESTBIN)/ipp.php \ +$(DESTBIN)/ipp.menu.dat \ +$(DESTBIN)/ipp.copy.dat \ +$(DESTBIN)/ipp.science.dat \ +$(DESTBIN)/ipp.detrend.dat \ +$(DESTBIN)/ipp.imfiles.dat \ +$(DESTBIN)/ipp.warp.dat \ +$(DESTBIN)/ipp.diff.dat \ +$(DESTBIN)/ipp.stack.dat \ +$(DESTBIN)/Login.php \ +$(DESTBIN)/SelectProject.php \ +$(DESTBIN)/LoadSetup.php \ +$(DESTBIN)/ScienceSteps.php \ +$(DESTBIN)/DetrendSteps.php \ +$(DESTBIN)/ImfileTables.php \ +$(DESTBIN)/WarpSteps.php \ +$(DESTBIN)/DiffSteps.php \ +$(DESTBIN)/StackSteps.php \ +$(DESTBIN)/phptest.php \ +$(DESTBIN)/getimage.php + +DEFSRC = \ +$(DESTBIN)/masterDetrendFrames.php \ +$(DESTBIN)/masterDetrendImfiles.php \ +$(DESTBIN)/detInputExp.php \ +$(DESTBIN)/detMasterFrame.php \ +$(DESTBIN)/detMasterImfile.php \ +$(DESTBIN)/detNormalizedExp.php \ +$(DESTBIN)/detNormalizedImfile.php \ +$(DESTBIN)/detNormalizedStatImfile.php \ +$(DESTBIN)/detProcessedImfile.php \ +$(DESTBIN)/detProcessedExp.php \ +$(DESTBIN)/detResidExp.php \ +$(DESTBIN)/detResidImfile.php \ +$(DESTBIN)/detRun.php \ +$(DESTBIN)/detRunSummary.php \ +$(DESTBIN)/detStackedImfile.php \ +$(DESTBIN)/newExp.php \ +$(DESTBIN)/newImfile.php \ +$(DESTBIN)/guidePendingExp.php \ +$(DESTBIN)/chipPendingExp.php \ +$(DESTBIN)/chipPendingImfile.php \ +$(DESTBIN)/chipProcessedExp.php \ +$(DESTBIN)/chipProcessedImfile.php \ +$(DESTBIN)/camPendingExp.php \ +$(DESTBIN)/camProcessedExp.php \ +$(DESTBIN)/pzPendingExp.php \ +$(DESTBIN)/pzPendingImfile.php \ +$(DESTBIN)/rawUnknownExp.php \ +$(DESTBIN)/rawDetrendExp.php \ +$(DESTBIN)/rawDetrendExp_detrend.php \ +$(DESTBIN)/rawImfile.php \ +$(DESTBIN)/rawImfile_failed.php \ +$(DESTBIN)/rawExp_failed.php \ +$(DESTBIN)/rawScienceExp.php \ +$(DESTBIN)/summitExp.php \ +$(DESTBIN)/warpRun.php \ +$(DESTBIN)/warpInputExp.php \ +$(DESTBIN)/warpSkycellMap.php \ +$(DESTBIN)/warpSkyfile.php \ +$(DESTBIN)/diffRun.php \ +$(DESTBIN)/diffInputSkyfile.php \ +$(DESTBIN)/diffSkyfile.php \ +$(DESTBIN)/stackRun.php \ +$(DESTBIN)/stackInputSkyfile.php \ +$(DESTBIN)/stackSumSkyfile.php + + +PICTURES = \ +$(DESTBIN)/PScolorlogo2.jpg \ +$(DESTBIN)/missing.png + +DESTLINK = $(DESTBIN)/index.php + +php: $(RAWSRC) $(DEFSRC) $(PICTURES) $(DESTLINK) + +# dependancy rules for binary code ######################### +# .PRECIOUS: %.$(ARCH).o +# .PRECIOUS: $(BIN)/%.$(ARCH) + +$(DESTLINK): $(DESTBIN)/Login.php + rm -f $@ + ln -s $(DESTBIN)/Login.php $@ + +$(SRC)/%.php: $(DEF)/%.d $(DEF)/autocode.php ./generate + @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi + ./generate $< $(DEF)/autocode.php $@ + +# $(SRC)/%.php: $(RAW)/%.php +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ +# +# $(SRC)/%.css: $(RAW)/%.css +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ +# +# $(SRC)/%.dat: $(RAW)/%.dat +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ +# +# $(SRC)/%.jpg: $(RAW)/%.jpg +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ +# +# $(SRC)/%.png: $(RAW)/%.png +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ +# +# $(SRC)/%.jpeg: $(RAW)/%.jpeg +# @if [ ! -d $(SRC) ]; then mkdir -p $(SRC); fi +# cp $< $@ + +# generated php code is built into SRC first +$(DESTBIN)/%.php: $(SRC)/%.php + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.php || exit + cp $(SRC)/$*.php $(DESTBIN)/$*.php || exit + +# non-generated php code is copied directly +$(DESTBIN)/%.php: $(RAW)/%.php + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.php || exit + cp $(RAW)/$*.php $(DESTBIN)/$*.php || exit + +# all other files are copied directly +$(DESTBIN)/%.css: $(RAW)/%.css + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.css || exit + cp $(RAW)/$*.css $(DESTBIN)/$*.css || exit + +$(DESTBIN)/%.dat: $(RAW)/%.dat + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.dat || exit + cp $(RAW)/$*.dat $(DESTBIN)/$*.dat || exit + +$(DESTBIN)/%.jpg: $(RAW)/%.jpg + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.jpg || exit + cp $(RAW)/$*.jpg $(DESTBIN)/$*.jpg || exit + +$(DESTBIN)/%.jpeg: $(RAW)/%.jpeg + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.jpeg || exit + cp $(RAW)/$*.jpeg $(DESTBIN)/$*.jpeg || exit + +$(DESTBIN)/%.png: $(RAW)/%.png + @if [ ! -d $(DESTBIN) ]; then mkdir -p $(DESTBIN) || exit; fi + rm -f $(DESTBIN)/$*.png || exit + cp $(RAW)/$*.png $(DESTBIN)/$*.png || exit + +# utilities ################################################# + +clean: + rm -f `find . -name "*.o"` + rm -f `find . -name "*~"` + rm -f `find . -name "#*"` + +.PRECIOUS: $(SRC)/%.php +.PRECIOUS: $(SRC)/%.css +.PRECIOUS: $(SRC)/%.dat +.PRECIOUS: $(SRC)/%.png +.PRECIOUS: $(SRC)/%.jpg +.PRECIOUS: $(SRC)/%.jpeg Index: /branches/rel-1-1/ippMonitor/dbadmin =================================================================== --- /branches/rel-1-1/ippMonitor/dbadmin (revision 12167) +++ /branches/rel-1-1/ippMonitor/dbadmin (revision 12167) @@ -0,0 +1,76 @@ +#!/bin/csh -f +## this script creates the tables needed by ippMonitor for user administration + +if ($#argv < 4) goto usage; + +if ("$1" == "init") then + if ($#argv != 4) goto usage; + set dbserver = $2 + set dbuser = $3 + set dbpass = $4 + + mysql -h $dbserver -u root -p < $TITLE

"; + +// set up the form +echo "
\n"; + +// define restrictiosn to the queries +// ** TABLE RESTRICTIONS ** + +// get the result table count +if ($WHERE) { + $sql = "SELECT count(*) FROM $TABLE WHERE $WHERE"; +} else { + $sql = "SELECT count(*) FROM $TABLE"; +} +$qry = $db->query($sql); +if (DB::iserror($db)) { + echo "error reading $TABLE table count
\n"; + menu_end(); +} +if (!$qry->fetchInto($row)) { + echo "error reading $TABLE table count
\n"; + menu_end(); +} +// set up the row counter variables +if ($ID['from']) { + $rowStart = $ID['from']; +} else { + $rowStart = 0; +} +$rowLast = $rowStart + $dTABLE; +$rowTotal = $row[0]; +if ($rowLast > $rowTotal) { $rowLast = $rowTotal; } +echo " $rowStart to $rowLast of $rowTotal items
\n"; + +// query the database +if ($WHERE) { + $sql = "SELECT $FIELDS FROM $TABLE WHERE $WHERE LIMIT $dTABLE OFFSET $rowStart"; +} else { + $sql = "SELECT $FIELDS FROM $TABLE LIMIT $dTABLE OFFSET $rowStart"; +} + +$qry = $db->query($sql); +if (DB::iserror($db)) { + echo "error reading $TABLE table
\n"; + menu_end(); +} + +// ** HEAD CODE ** + +if ($rowStart > 0) { + $value = 0; + $link = "$FILE" . "?" . $ID['link'] . "&from=$value"; + echo "<<\n"; +} else { + echo "<<\n"; +} +if ($rowStart >= $dTABLE) { + $value = $rowStart - $dTABLE; + $link = "$FILE" . "?" . $ID['link'] . "&from=$value"; + echo "<\n"; +} else { + echo "<\n"; +} + +if ($rowLast < $rowTotal) { + $value = $rowStart + $dTABLE; + $link = "$FILE" . "?" . $ID['link'] . "&from=$value"; + echo ">\n"; +} else { + echo ">\n"; +} + +if ($rowLast < $rowTotal) { + $value = $rowTotal - $dTABLE; + $link = "$FILE" . "?" . $ID['link'] . "&from=$value"; + echo ">>\n"; +} else { + echo ">>\n"; +} + +echo "  :   or enter start row: \n"; + +// set up the table +echo "\n"; +echo "\n"; +// ** TABLE HEADER ** +// echo "\n"; +echo "\n"; + +// query restriction form +echo "\n"; +// echo "\n"; +// ** TABLE QUERY ** +echo "\n"; + +// list the results +while ($qry->fetchInto($row)) { + // $link = "$FILE" . "?expID=" . $row[0] . "&" . $ID['link']; + + echo "\n"; + // ** TABLE DATA ** + // echo "\n"; + // echo "\n"; + echo "\n"; +} + +// query restriction form +// echo "\n"; +// echo "\n"; +// TABLE QUERY +// echo "\n"; + +// close the table and form +echo "
FIELD
$row[0] $row[1]
\n"; +echo "\n"; +$pass = $ID['pass']; +$proj = $ID['proj']; +$menu = $ID['menu']; +echo "\n"; +echo "\n"; +echo "\n"; +echo "
\n"; + +// ** TAIL CODE ** + +echo " WHERE: $WHERE

\n"; +echo " SQL: $sql

\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/def/camPendingExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/camPendingExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/camPendingExp.d (revision 12167) @@ -0,0 +1,9 @@ +TABLE camPendingExp +TITLE camPendingExp +FILE camPendingExp.php +MENU ipp.science.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure ID, value, chipProcessedImfile.php, exp_tag=$exp_tag +FIELD chip_version, 20, chip version, value, chipProcessedExp.php, exp_tag=$exp_tag +FIELD cam_version, 20, cam version Index: /branches/rel-1-1/ippMonitor/def/camProcessedExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/camProcessedExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/camProcessedExp.d (revision 12167) @@ -0,0 +1,13 @@ +TABLE camProcessedExp +TITLE camProcessedExp +FILE camProcessedExp.php +MENU ipp.science.dat + +# field size name show link to extras +FIELD exp_tag, 15, Exposure, value +FIELD image, 8, image, image=$path_base@PPIMAGE.JPEG2, chipProcessedImfile.php, exp_tag=$exp_tag,image=$path_base@PPIMAGE.JPEG1 +FIELD bg, 8, backgnd, value +FIELD bg_mean_stdev, 8, [stdev], value +FIELD bg_stdev, 8, stdev, value +FIELD path_base, 20, path_base, none +#FIELD recipe, 15, Recipe, value Index: /branches/rel-1-1/ippMonitor/def/chipPendingExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/chipPendingExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/chipPendingExp.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE chipPendingExp +TITLE chipPendingExp +FILE chipPendingExp.php +MENU ipp.science.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD recipe, 20, recipe +FIELD guide_version, 20, guide version +FIELD chip_version, 20, chip version Index: /branches/rel-1-1/ippMonitor/def/chipPendingImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/chipPendingImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/chipPendingImfile.d (revision 12167) @@ -0,0 +1,12 @@ +TABLE chipPendingImfile +TITLE chipPendingImfile +FILE chipPendingImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure Tag +FIELD class_id, 20, class ID +FIELD uri, 20, URI +FIELD recipe, 20, recipe +FIELD guide_version, 20, guide version +FIELD chip_version, 20, chip version Index: /branches/rel-1-1/ippMonitor/def/chipProcessedExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/chipProcessedExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/chipProcessedExp.d (revision 12167) @@ -0,0 +1,9 @@ +TABLE chipProcessedExp +TITLE chipProcessedExp +FILE chipProcessedExp.php +MENU ipp.science.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure ID, value, chipProcessedImfile.php, exp_tag=$exp_tag +FIELD guide_version, 20, guide version, value, guidePendingExp.php exp_tag=$exp_tag +FIELD chip_version, 20, chip version Index: /branches/rel-1-1/ippMonitor/def/chipProcessedImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/chipProcessedImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/chipProcessedImfile.d (revision 12167) @@ -0,0 +1,18 @@ +TABLE chipProcessedImfile +TITLE chipProcessedImfile +FILE chipProcessedImfile.php +MENU ipp.imfiles.dat + +# field size name show link to extras +FIELD exp_tag, 15, Exposure +FIELD class_id, 8, Chip ID +FIELD bg, 8, backgnd +FIELD bg_mean_stdev, 8, [stdev] +FIELD bg_stdev, 8, stdev +#FIELD guide_version, 20, guide version +#FIELD chip_version, 20, chip version +#FIELD recipe, 20, recipe +#FIELD uri, 20, URI +#FIELD path_base, 20, URI path base + +TAIL PHP insert_image ('image'); Index: /branches/rel-1-1/ippMonitor/def/detInputExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detInputExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detInputExp.d (revision 12167) @@ -0,0 +1,16 @@ +TABLE detInputExp +TITLE detInputExp +FILE detInputExp.php +MENU ipp.detrend.dat + +# HEAD HTML test head 1
+ +# field width name show link to extras +FIELD det_id, 7, det_id +FIELD exp_tag, 20, exposure, value, rawImfile.php, exp_tag=$exp_tag +FIELD iteration, 5, iteration +FIELD include, 7, include +FIELD *, 5, resid, value=goto, detResidImfile.php, exp_tag=$exp_tag,det_id=$det_id,iteration=$iteration +FIELD *, 5, proc, value=goto, detProcessedImfile.php, exp_tag=$exp_tag,det_id=$det_id,iteration=$iteration + +# TAIL HTML test tail 1
Index: /branches/rel-1-1/ippMonitor/def/detMasterFrame.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detMasterFrame.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detMasterFrame.d (revision 12167) @@ -0,0 +1,9 @@ +TABLE detMasterFrame +TITLE detMasterFrame +FILE detMasterFrame.php +MENU ipp.detrend.dat + +# field name show link to extras +FIELD det_id, 20, det_id +FIELD iteration, 20, iteration +FIELD comment, 20, comment Index: /branches/rel-1-1/ippMonitor/def/detMasterImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detMasterImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detMasterImfile.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE detMasterImfile +TITLE detMasterImfile +FILE detMasterImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD det_id, 20, det_id +FIELD class_id, 20, class_id +FIELD uri, 20, uri +FIELD recipe, 20, recipe Index: /branches/rel-1-1/ippMonitor/def/detNormalizedExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detNormalizedExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detNormalizedExp.d (revision 12167) @@ -0,0 +1,14 @@ +TABLE detNormalizedExp +TITLE detNormalizedExp +FILE detNormalizedExp.php +MENU ipp.detrend.dat + +# field size name show link to extras +FIELD det_id, 7, det_id +FIELD bg, 8, backgnd +FIELD bg_mean_stdev, 8, [stdev] +FIELD bg_stdev, 8, stdev +FIELD iteration, 5, iteration +FIELD image, 8, image, image=$path_base@PPIMAGE.JPEG2, detNormalizedImfile.php, det_id=$det_id,iteration=$iteration,image=$path_base@PPIMAGE.JPEG1 +#FIELD path_base, 20, path_base +#FIELD recipe, 20, recipe Index: /branches/rel-1-1/ippMonitor/def/detNormalizedImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detNormalizedImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detNormalizedImfile.d (revision 12167) @@ -0,0 +1,16 @@ +TABLE detNormalizedImfile +TITLE detNormalizedImfile +FILE detNormalizedImfile.php +MENU ipp.imfiles.dat + +# field size name show link to extras +FIELD det_id, 7, det_id +FIELD class_id, 8, class_id +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, stdev +FIELD bg_mean_stdev, 8, [stdev] +FIELD iteration, 5, iteration +#FIELD uri, 20, uri +#FIELD path_base, 20, path_base + +TAIL PHP insert_image ('image'); Index: /branches/rel-1-1/ippMonitor/def/detNormalizedStatImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detNormalizedStatImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detNormalizedStatImfile.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE detNormalizedStatImfile +TITLE detNormalizedStatImfile +FILE detNormalizedStatImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD det_id, 7, det_id +FIELD class_id, 8, class_id +FIELD iteration, 5, iteration +FIELD norm, 5, norm Index: /branches/rel-1-1/ippMonitor/def/detProcessedExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detProcessedExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detProcessedExp.d (revision 12167) @@ -0,0 +1,14 @@ +TABLE detProcessedExp +TITLE detProcessedExp +FILE detProcessedExp.php +MENU ipp.detrend.dat + +# field size name show link to extras +FIELD det_id, 7, Det ID, value +FIELD exp_tag, 15, Exposure, value +FIELD image, 8, image, image=$path_base@PPIMAGE.JPEG2, detProcessedImfile.php, det_id=$det_id,exp_tag=$exp_tag,image=$path_base@PPIMAGE.JPEG1 +FIELD bg, 8, backgnd, value +FIELD bg_mean_stdev, 8, [stdev], value +FIELD bg_stdev, 8, stdev, value +FIELD recipe, 15, Recipe, value +FIELD path_base, 20, path_base, none Index: /branches/rel-1-1/ippMonitor/def/detProcessedImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detProcessedImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detProcessedImfile.d (revision 12167) @@ -0,0 +1,17 @@ +TABLE detProcessedImfile +TITLE detProcessedImfile +FILE detProcessedImfile.php +MENU ipp.imfiles.dat + +# field size name show link to extras +FIELD det_id, 7, Det ID +FIELD exp_tag, 15, Exposure +FIELD class_id, 8, Chip ID +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, stdev +FIELD bg_mean_stdev, 8, [stdev] +# FIELD recipe, 10, recipe +# FIELD uri, 20, uri +# FIELD path_base, 20, path_base + +TAIL PHP insert_image ('image'); Index: /branches/rel-1-1/ippMonitor/def/detResidExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detResidExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detResidExp.d (revision 12167) @@ -0,0 +1,16 @@ +TABLE detResidExp +TITLE detResidExp +FILE detResidExp.php +MENU ipp.detrend.dat + +# field size name show link to extras +FIELD det_id, 7, Det ID, value +FIELD exp_tag, 15, Exposure, value, rawImfile.php, exp_tag=$exp_tag +FIELD image, 8, image, image=$path_base@PPIMAGE.JPEG2, detResidImfile.php, det_id=$det_id,iteration=$iteration,exp_tag=$exp_tag,image=$path_base@PPIMAGE.JPEG1 +FIELD bg, 8, backgnd, value +FIELD bg_mean_stdev, 8, [stdev] +FIELD bg_stdev, 8, stdev, value +FIELD iteration, 5, iter, value +FIELD accept, 4, keep, value +FIELD path_base, 20, path_base, none +# FIELD recipe, 15, recipe, value Index: /branches/rel-1-1/ippMonitor/def/detResidImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detResidImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detResidImfile.d (revision 12167) @@ -0,0 +1,18 @@ +TABLE detResidImfile +TITLE detResidImfile +FILE detResidImfile.php +MENU ipp.imfiles.dat + +# field size name show link to extras +FIELD det_id, 7, Det ID +FIELD exp_tag, 15, Exposure +FIELD class_id, 8, Chip ID +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, bg stdev +FIELD bg_mean_stdev, 8, [stdev] +FIELD iteration, 5, iter +# FIELD uri, 20, uri +# FIELD recipe, 20, recipe +# FIELD path_base, 20, path_base + +TAIL PHP insert_image ('image'); Index: /branches/rel-1-1/ippMonitor/def/detRun.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detRun.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detRun.d (revision 12167) @@ -0,0 +1,21 @@ +TABLE detRun +TITLE detRun +FILE detRun.php +MENU ipp.detrend.dat + +# field width name show link to extras +FIELD det_id, 7, det ID, value, detRunSummary.php, det_id=$det_id +FIELD iteration, 5, iteration +FIELD det_type, 8, det_type +FIELD state, 5, state +FIELD mode, 5, mode +FIELD exp_type, 8, exp_type (drop) +FIELD filter, 10, filter +FIELD airmass, 10, airmass +FIELD exp_time, 10, exp_time +FIELD ccd_temp, 10, ccd_temp +FIELD posang, 10, posang +FIELD object, 10, object +FIELD registered, 10, registered +FIELD use_begin, 10, use_begin +FIELD use_end, 10, use_end Index: /branches/rel-1-1/ippMonitor/def/detRunSummary.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detRunSummary.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detRunSummary.d (revision 12167) @@ -0,0 +1,14 @@ +TABLE detRunSummary +TITLE detRunSummary +FILE detRunSummary.php +MENU ipp.detrend.dat + +# field name show link to extras +FIELD det_id, 7, det_id +FIELD iteration, 5, iter +FIELD accept, 4, keep +FIELD *, 20, choose, value=input, detInputExp.php, det_id=$det_id,iteration=$iteration +FIELD *, 20, choose, value=resid, detResidExp.php, det_id=$det_id,iteration=$iteration +FIELD bg, 20, bg +FIELD bg_stdev, 20, bg_stdev +# FIELD bg_mean_stdev, 20, bg_mean_stdev Index: /branches/rel-1-1/ippMonitor/def/detStackedImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/detStackedImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/detStackedImfile.d (revision 12167) @@ -0,0 +1,14 @@ +TABLE detStackedImfile +TITLE detStackedImfile +FILE detStackedImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD det_id, 7, det_id +FIELD class_id, 8, class_id +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, stdev +FIELD bg_mean_stdev, 8, [stdev] +FIELD iteration, 5, iteration +# FIELD uri, 20, uri +# FIELD recipe, 20, recipe Index: /branches/rel-1-1/ippMonitor/def/diffInputSkyfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/diffInputSkyfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/diffInputSkyfile.d (revision 12167) @@ -0,0 +1,12 @@ +TABLE diffInputSkyfile +TITLE diffInputSkyfile +FILE diffInputSkyfile.php +MENU ipp.diff.dat + +# field name show link to extras +FIELD diff_id, 20, diff ID +FIELD warp_id, 20, warp ID +FIELD skycell_id, 20, skycell ID +FIELD tess_id, 20, tessellation ID +FIELD kind, 20, Kind +FIELD template, 20, Template? Index: /branches/rel-1-1/ippMonitor/def/diffRun.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/diffRun.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/diffRun.d (revision 12167) @@ -0,0 +1,13 @@ +TABLE diffRun +TITLE diffRun +FILE diffRun.php +MENU ipp.diff.dat + +# field name show link to extras +FIELD diff_id, 20, diff ID +FIELD state, 20, state +FIELD workdir, 20, workdir +FIELD dvodb, 20, DVO database +FIELD registered, 20, Time registered +FIELD skycell_id, 20, skycell ID +FIELD tess_id, 20, tessellation ID Index: /branches/rel-1-1/ippMonitor/def/diffSkyfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/diffSkyfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/diffSkyfile.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE diffSkyfile +TITLE diffSkyfile +FILE diffSkyfile.php +MENU ipp.diff.dat + +# field name show link to extras +FIELD diff_id, 20, diff ID +FIELD uri, 20, URI +FIELD bg, 20, background +FIELD bg_stdev, 20, standard deviation Index: /branches/rel-1-1/ippMonitor/def/example.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/example.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/example.d (revision 12167) @@ -0,0 +1,29 @@ +# this file il +# master detrend runs which have been accepted + +TABLE detRunSummary, detRun +TITLE Master Detrend Images +FILE masterDetrendImages.php +MENU ipp.detrend.dat + +# the following WHERE clauses are added to all queries joined by AND +WHERE detRunSummary.accept = 1 +WHERE detRun.det_it = detRunSummary.det_id +WHERE detRun.iteration = detRunSummary.iteration + +# field width name show link to extras +FIELD detRunSummary.det_id, 7, det_id +FIELD detRun.det_type, 5, type +FIELD detRunSummary.iteration, 5, iter +FIELD *, 20, choose, value=input, detInputExp.php, det_id=$detRunSummary.det_id,iteration=$detRunSummary.iteration +FIELD *, 20, choose, value=resid, detResidExp.php, det_id=$detRunSummary.det_id,iteration=$detRunSummary.iteration +FIELD detRunSummary.bg, 20, bg +FIELD detRunSummary.bg_stdev, 20, bg_stdev +# FIELD bg_mean_stdev, 20, bg_mean_stdev + +# this file illustrates a simple inner join to generate the output table +# assuming no other dynamic restrictions are added, this generates the following query: +# SELECT detRunSummary.det_id,detRunSummary.iteration,detRunSummary.iteration,detRun.det_type,detRunSummary.bg,detRunSummary.bg_stdev \ +# FROM detRunSummary, detRun \ +# WHERE detRunSummary.accept = 1 AND detRun.det_id = detRunSummary.det_id AND detRun.iteration = detRunSummary.iteration \ +# LIMIT 20 Index: /branches/rel-1-1/ippMonitor/def/guidePendingExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/guidePendingExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/guidePendingExp.d (revision 12167) @@ -0,0 +1,9 @@ +TABLE guidePendingExp +TITLE guidePendingExp +FILE guidePendingExp.php +MENU ipp.science.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD recipe, 20, recipe +FIELD guide_version, 20, guide version Index: /branches/rel-1-1/ippMonitor/def/masterDetrendFrames.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/masterDetrendFrames.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/masterDetrendFrames.d (revision 12167) @@ -0,0 +1,30 @@ +# this file is based on the detRunSummary.d file: it uses the same tables restricted to the +# master detrend runs which have been accepted + +TABLE detRunSummary, detRun +TITLE Master Detrend Frames +FILE masterDetrendFrames.php +MENU ipp.detrend.dat + +# the following WHERE clauses are added to all queries joined by AND +WHERE detRunSummary.accept = 1 +WHERE detRun.det_id = detRunSummary.det_id +WHERE detRun.iteration = detRunSummary.iteration + +# field width name show link to extras +FIELD detRunSummary.det_id, 7, det_id, value, detRunSummary.php, det_id=$detRunSummary.det_id +FIELD detRunSummary.iteration, 5, iter +FIELD detRun.det_type, 5, type +FIELD *, 20, choose, value=files, detNormalizedImfiles.php, det_id=$detRunSummary.det_id,iteration=$detRunSummary.iteration +FIELD *, 20, choose, value=input, detInputExp.php, det_id=$detRunSummary.det_id,iteration=$detRunSummary.iteration +FIELD *, 20, choose, value=resid, detResidExp.php, det_id=$detRunSummary.det_id,iteration=$detRunSummary.iteration +FIELD detRunSummary.bg, 20, bg +FIELD detRunSummary.bg_stdev, 20, bg_stdev +# FIELD bg_mean_stdev, 20, bg_mean_stdev + +# this file illustrates a simple inner join to generate the output table +# assuming no other dynamic restrictions are added, this generates the following query: +# SELECT detRunSummary.det_id,detRunSummary.iteration,detRunSummary.iteration,detRun.det_type,detRunSummary.bg,detRunSummary.bg_stdev \ +# FROM detRunSummary, detRun \ +# WHERE detRunSummary.accept = 1 AND detRun.det_id = detRunSummary.det_id AND detRun.iteration = detRunSummary.iteration \ +# LIMIT 20 Index: /branches/rel-1-1/ippMonitor/def/masterDetrendImfiles.d.src =================================================================== --- /branches/rel-1-1/ippMonitor/def/masterDetrendImfiles.d.src (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/masterDetrendImfiles.d.src (revision 12167) @@ -0,0 +1,19 @@ +# this file is based on the detRunSummary.d file: it uses the same tables restricted to the +# master detrend runs which have been accepted + +TABLE detStackedImfile +TITLE Master Detrend Imfiles +FILE masterDetrendImfiles.php +MENU ipp.detrend.dat + +# field width name show link to extras +FIELD det_id, 7, det_id +FIELD iteration, 5, iter +FIELD uri, 5, uri + +# this file illustrates a simple inner join to generate the output table +# assuming no other dynamic restrictions are added, this generates the following query: +# SELECT detRunSummary.det_id,detRunSummary.iteration,detRunSummary.iteration,detRun.det_type,detRunSummary.bg,detRunSummary.bg_stdev \ +# FROM detRunSummary, detRun \ +# WHERE detRunSummary.accept = 1 AND detRun.position = detRunSummary.det_id AND detRun.iteration = detRunSummary.iteration \ +# LIMIT 20 Index: /branches/rel-1-1/ippMonitor/def/newExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/newExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/newExp.d (revision 12167) @@ -0,0 +1,11 @@ +TABLE newExp +TITLE New Exposures +FILE newExp.php +MENU ipp.copy.dat + +# field name show link to extras +FIELD exp_id, 20, exposure ID +FIELD exp_tag, 20, exposure Tag +FIELD camera, 20, camera +FIELD telescope, 20, telescope +FIELD imfiles, 20, N imfiles Index: /branches/rel-1-1/ippMonitor/def/newImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/newImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/newImfile.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE newImfile +TITLE Raw Science Exposures +FILE newImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD exp_tag, 20, exposure Tag +FIELD class, 20, class +FIELD class_id, 20, class ID +FIELD uri, 20, URI Index: /branches/rel-1-1/ippMonitor/def/pzPendingExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/pzPendingExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/pzPendingExp.d (revision 12167) @@ -0,0 +1,9 @@ +TABLE pzPendingExp +TITLE pending exposures +FILE pzPendingExp.php +MENU ipp.copy.dat + +# field name show link to extras +FIELD exp_id, 20, exposures ID +FIELD camera, 20, camera +FIELD telescope, 20, telescope Index: /branches/rel-1-1/ippMonitor/def/pzPendingImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/pzPendingImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/pzPendingImfile.d (revision 12167) @@ -0,0 +1,11 @@ +TABLE pzPendingImfile +TITLE Pending Image Files +FILE pzPendingImfile.php +MENU ipp.imfiles.dat + +# field name show link to extras +FIELD exp_id, 20, exposure ID +FIELD camera, 20, camera +FIELD telescope, 20, telescope +FIELD class, 20, class +FIELD class_id, 20, class ID Index: /branches/rel-1-1/ippMonitor/def/rawDetrendExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawDetrendExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawDetrendExp.d (revision 12167) @@ -0,0 +1,30 @@ +TABLE rawExp +TITLE Raw Detrend Exposures +FILE rawDetrendExp.php +MENU ipp.copy.dat + +# limit this table to non-OBJECT types of images +WHERE rawExp.exp_type != 'OBJECT' + +# field name show link to extras +FIELD exp_tag, 10, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD telescope, 10, Telescope +FIELD camera, 10, Camera +FIELD exp_type, 10, Type +FIELD filter, 10, FILTER +FIELD dateobs, 20, Date/Time +FIELD exp_time, 5, exp_time +FIELD airmass, 5, airmass +FIELD bg, 5, backgnd +FIELD bg_stdev, 5, stdev +FIELD bg_mean_stdev, 5, <backgnd> +# FIELD ra, 8, ra +# FIELD decl, 8, decl +# FIELD object, 10, object +# FIELD imfiles, 20, imfiles +# FIELD airmass, 20, airmass +# FIELD bg_mean_stdev, 20, bg_mean_stdev +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang Index: /branches/rel-1-1/ippMonitor/def/rawDetrendExp_detrend.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawDetrendExp_detrend.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawDetrendExp_detrend.d (revision 12167) @@ -0,0 +1,32 @@ +TABLE rawExp +TITLE Raw Detrend Exposures +FILE rawDetrendExp.php +MENU ipp.detrend.dat + +# limit this table to non-OBJECT types of images +WHERE rawExp.exp_type != 'OBJECT' + +# field name show link to extras +FIELD exp_tag, 10, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD telescope, 10, Telescope +FIELD camera, 10, Camera +FIELD exp_type, 10, Type +FIELD filter, 10, FILTER +FIELD dateobs, 20, Date/Time +FIELD exp_time, 5, exp_time +FIELD airmass, 5, airmass +FIELD bg, 5, backgnd +FIELD bg_stdev, 5, stdev +FIELD bg_mean_stdev, 5, <backgnd> +# FIELD imfiles, 20, imfiles +# FIELD airmass, 20, airmass +# FIELD ra, 20, ra +# FIELD decl, 20, decl +# FIELD exp_time, 20, exp_time +# FIELD bg, 20, bg +# FIELD bg_stdev, 20, bg_stdev +# FIELD bg_mean_stdev, 20, bg_mean_stdev +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang Index: /branches/rel-1-1/ippMonitor/def/rawExp_failed.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawExp_failed.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawExp_failed.d (revision 12167) @@ -0,0 +1,30 @@ +TABLE rawExp +TITLE Raw Detrend Exposures +FILE rawExp_failed.php +MENU ipp.copy.dat + +# limit this table to non-OBJECT types of images +WHERE fault > 0 + +# field name show link to extras +FIELD exp_tag, 10, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD telescope, 10, Telescope +FIELD camera, 10, Camera +FIELD exp_type, 10, Type +FIELD filter, 10, FILTER +FIELD dateobs, 20, Date/Time +FIELD exp_time, 5, exp_time +FIELD airmass, 5, airmass +FIELD bg, 5, backgnd +FIELD bg_stdev, 5, stdev +FIELD bg_mean_stdev, 5, <backgnd> +# FIELD ra, 8, ra +# FIELD decl, 8, decl +# FIELD object, 10, object +# FIELD imfiles, 20, imfiles +# FIELD airmass, 20, airmass +# FIELD bg_mean_stdev, 20, bg_mean_stdev +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang Index: /branches/rel-1-1/ippMonitor/def/rawImfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawImfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawImfile.d (revision 12167) @@ -0,0 +1,27 @@ +TABLE rawImfile +TITLE Raw Image File +FILE rawImfile.php +MENU ipp.imfiles.dat + +HEAD PHP insert_backref ("rawUnknownExp.php", "exp_tag", $ID['link']); + +# field name show link to extras +FIELD exp_tag, 15, Exposure +FIELD class_id, 8, Chip ID +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, stdev +FIELD bg_mean_stdev, 8, [stdev] +FIELD uri, 10, uri +# FIELD class, 20, Class +# FIELD uri, 20, uri +# FIELD exp_type, 20, exp_type +# FIELD filter, 20, filter +# FIELD airmass, 20, airmass +# FIELD ra, 20, ra +# FIELD decl, 20, decl +# FIELD exp_time, 20, exp_time +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang +# FIELD object, 20, object Index: /branches/rel-1-1/ippMonitor/def/rawImfile_failed.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawImfile_failed.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawImfile_failed.d (revision 12167) @@ -0,0 +1,28 @@ +TABLE rawImfile +TITLE Raw Image File +FILE rawImfile.php +MENU ipp.copy.dat + +HEAD PHP insert_backref ("rawUnknownExp.php", "exp_tag", $ID['link']); +WHERE fault > 0 + +# field name show link to extras +FIELD exp_tag, 15, Exposure +FIELD class_id, 8, Chip ID +FIELD bg, 8, backgnd +FIELD bg_stdev, 8, stdev +FIELD bg_mean_stdev, 8, [stdev] +FIELD uri, 10, uri +# FIELD class, 20, Class +# FIELD uri, 20, uri +# FIELD exp_type, 20, exp_type +# FIELD filter, 20, filter +# FIELD airmass, 20, airmass +# FIELD ra, 20, ra +# FIELD decl, 20, decl +# FIELD exp_time, 20, exp_time +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang +# FIELD object, 20, object Index: /branches/rel-1-1/ippMonitor/def/rawScienceExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawScienceExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawScienceExp.d (revision 12167) @@ -0,0 +1,27 @@ +TABLE rawExp +TITLE Raw Science Exposures +FILE rawScienceExp.php +MENU ipp.copy.dat + +# limit this table to OBJECT types of images +WHERE rawExp.exp_type = 'OBJECT' + +# field name show link to extras +FIELD exp_tag, 10, exposure Tag, value, rawImfile.php, exp_tag=$exp_tag,camera=$camera,foo=bar +FIELD telescope, 10, Telescope, value, telescopes.php +FIELD camera, 10, Camera +FIELD exp_type, 8, Type +FIELD filter, 10, FILTER +FIELD ra, 8, ra +FIELD decl, 8, decl +FIELD object, 10, object +FIELD airmass, 5, airmass +FIELD exp_time, 5, exp_time +FIELD bg, 5, bg +FIELD bg_stdev, 5, bg_stdev +# FIELD imfiles, 20, imfiles +# FIELD bg_mean_stdev, 20, bg_mean_stdev +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang Index: /branches/rel-1-1/ippMonitor/def/rawUnknownExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/rawUnknownExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/rawUnknownExp.d (revision 12167) @@ -0,0 +1,30 @@ +TABLE rawExp +TITLE Raw Detrend Exposures +FILE rawDetrendExp.php +MENU ipp.copy.dat + +# limit this table to non-OBJECT types of images +WHERE rawExp.exp_type is NULL + +# field name show link to extras +FIELD exp_tag, 10, exposure ID, value, rawImfile.php, exp_tag=$exp_tag +FIELD telescope, 10, Telescope +FIELD camera, 10, Camera +FIELD exp_type, 10, Type +FIELD filter, 10, FILTER +FIELD dateobs, 20, Date/Time +FIELD exp_time, 5, exp_time +FIELD airmass, 5, airmass +FIELD bg, 5, backgnd +FIELD bg_stdev, 5, stdev +FIELD bg_mean_stdev, 5, <backgnd> +# FIELD ra, 8, ra +# FIELD decl, 8, decl +# FIELD object, 10, object +# FIELD imfiles, 20, imfiles +# FIELD airmass, 20, airmass +# FIELD bg_mean_stdev, 20, bg_mean_stdev +# FIELD alt, 20, alt +# FIELD az, 20, az +# FIELD ccd_temp, 20, ccd_temp +# FIELD posang, 20, posang Index: /branches/rel-1-1/ippMonitor/def/stackInputSkyfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/stackInputSkyfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/stackInputSkyfile.d (revision 12167) @@ -0,0 +1,8 @@ +TABLE stackInputSkyfile +TITLE stackInputSkyfile +FILE stackInputSkyfile.php +MENU ipp.stack.dat + +# field name show link to extras +FIELD stack_id, 20, stack ID +FIELD warp_id, 20, warp ID Index: /branches/rel-1-1/ippMonitor/def/stackRun.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/stackRun.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/stackRun.d (revision 12167) @@ -0,0 +1,13 @@ +TABLE stackRun +TITLE stackRun +FILE stackRun.php +MENU ipp.stack.dat + +# field name show link to extras +FIELD stack_id, 20, stack ID +FIELD skycell_id, 20, skycell ID +FIELD tess_id, 20, tessellation ID +FIELD state, 20, state +FIELD workdir, 20, workdir +FIELD dvodb, 20, DVO database +FIELD registered, 20, time registered Index: /branches/rel-1-1/ippMonitor/def/stackSumSkyfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/stackSumSkyfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/stackSumSkyfile.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE stackSumSkyfile +TITLE stackSumSkyfile +FILE stackSumSkyfile.php +MENU ipp.stack.dat + +# field name show link to extras +FIELD stack_id, 20, stack ID +FIELD URI, 20, URI +FIELD bg, 20, background +FIELD bg_stdev, 20, standard deviation Index: /branches/rel-1-1/ippMonitor/def/summitExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/summitExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/summitExp.d (revision 12167) @@ -0,0 +1,11 @@ +TABLE summitExp +TITLE Pending Summit Exposures +FILE summitExp.php +MENU ipp.copy.dat + +# field name show link to extras +FIELD exp_id, 20, exposure ID +FIELD camera, 20, camera +FIELD telescope, 20, telescope +FIELD exp_type, 20, type +FIELD uri, 20, URI Index: /branches/rel-1-1/ippMonitor/def/warpInputExp.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/warpInputExp.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/warpInputExp.d (revision 12167) @@ -0,0 +1,10 @@ +TABLE warpInputExp +TITLE warpInputExp +FILE warpInputExp.php +MENU ipp.warp.dat + +# field name show link to extras +FIELD warp_id, 20, warp ID +FIELD exp_tag, 20, exposure tag +FIELD cam_version, 20, cam version +FIELD magiced, 20, magic done? Index: /branches/rel-1-1/ippMonitor/def/warpRun.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/warpRun.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/warpRun.d (revision 12167) @@ -0,0 +1,12 @@ +TABLE warpRun +TITLE warpRun +FILE warpRun.php +MENU ipp.warp.dat + +# field name show link to extras +FIELD warp_id, 20, warp ID +FIELD mode, 20, mode +FIELD state, 20, state +FIELD workdir, 20, workdir +FIELD dvodb, 20, DVO database +FIELD registered, 20, time registered Index: /branches/rel-1-1/ippMonitor/def/warpSkycellMap.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/warpSkycellMap.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/warpSkycellMap.d (revision 12167) @@ -0,0 +1,12 @@ +TABLE warpSkyCellMap +TITLE warpSkyCellMap +FILE warpSkyCellMap.php +MENU ipp.warp.dat + +# field name show link to extras +FIELD warp_id, 20, warp ID +FIELD skycell_id, 20, skycell ID +FIELD tess_id, 20, tessellation ID +FIELD exp_tag, 20, exposure tag +FIELD cam_version, 20, cam version +FIELD class_id, 20, class ID Index: /branches/rel-1-1/ippMonitor/def/warpSkyfile.d =================================================================== --- /branches/rel-1-1/ippMonitor/def/warpSkyfile.d (revision 12167) +++ /branches/rel-1-1/ippMonitor/def/warpSkyfile.d (revision 12167) @@ -0,0 +1,12 @@ +TABLE warpSkyfile +TITLE warpSkyfile +FILE warpSkyfile.php +MENU ipp.warp.dat + +# field name show link to extras +FIELD warp_id, 20, warp ID +FIELD skycell_id, 20, skycell ID +FIELD tess_id, 20, tessellation ID +FIELD uri, 20, URI +FIELD bg, 20, background +FIELD bg_stdev, 20, standard deviation Index: /branches/rel-1-1/ippMonitor/doc/notes.txt =================================================================== --- /branches/rel-1-1/ippMonitor/doc/notes.txt (revision 12167) +++ /branches/rel-1-1/ippMonitor/doc/notes.txt (revision 12167) @@ -0,0 +1,35 @@ + +Installation: + +the code currently requires three (3) hardwired paths to be set before +installation: + +- the DESTBIN directory in the Makefile must be set to the directory + in your apache installation where the package will reside + +- the database hostname, user, and password must be set in ipp.php + +- the location of the ipprc.config file must be specific in + getimage.php + +** TODO: set these with a configure script. + +- to update the mysql database from a dump: + * mysql -u root -p + create database NAME; + grant all on NAME.* to ipp@localhost; + * mysql -u ipp NAME -p < DUMPFILE + +- norm exp need to use dettool (-toresid ?) to get the list. + +- select * from detNormalizedImfile where detid,iteration + union select from detStackedImfile where detid,iteration,normalize=0 + +- create users table: + create database ippadmin; + use ippadmin; + create table users (username char(20) not null, password varchar(255)); + insert into users (username, password) values ('eugene', 'test1'); + + create table cookies (username char(20) not null, cookie varchar(255)); + insert into cookies (username, cookie) values ('eugene', 'foobar'); Index: /branches/rel-1-1/ippMonitor/generate =================================================================== --- /branches/rel-1-1/ippMonitor/generate (revision 12167) +++ /branches/rel-1-1/ippMonitor/generate (revision 12167) @@ -0,0 +1,418 @@ +#!/usr/bin/env perl + +$VERBOSE = 0; + +if ($ARGV[0] eq "-v") { $VERBOSE = 1; shift @ARGV; } +if (@ARGV != 3) { die "generate (schema) (template) (output)\n"; } + +$schema = $ARGV[0]; +$template = $ARGV[1]; +$output = $ARGV[2]; + +# global variables: +# @key, @value : paired list of keys and values +# @headcode, @tailcode : additional HTML or PHP code before or after table +# @field, @width, @name, @show, @link, @extras : properties of each table column + +&parse_schema; +&parse_template; +exit 0; + +sub parse_schema { + open (FILE, "$schema"); + @list = ; + close (FILE); + + &init_key ("MENU"); + &init_key ("STYLE"); + &init_key ("TABLE"); + &init_key ("TITLE"); + &init_key ("FILE"); + + &init_key ("FIELDS"); + + foreach $line (@list) { + chop $line; + ($key, $value) = split (" ", $line, 2); + + # strip leading and trailing white space from the following + if ($key eq "TABLE") { ($value) = $value =~ m|^\s*(.+)\s*$|; } + if ($key eq "TYPE") { ($value) = $value =~ m|^\s*(.+)\s*$|; } + + &set_keypair ($key, $value); + + # list of the table fields + if ($key eq "FIELD") { + ($field, $width, $name, $show, $link, $extras) = split (/,\s+/, $value, 6); + if (! $name) { die "table $ARGV[0] missing required elements\n"; } + # ($field) = $field =~ m|\s*(\S+)\s*|; + + if ($VERBOSE) { printf "%-20s %-20s %-20s %-20s %-20s\n", $field, $name, $show, $link, $extras; } + if ($show eq "") {$show = "value";} + push @field, $field; + push @width, $width; + push @name, $name; + push @show, $show; + push @link, $link; + push @extras, $extras; + } + + # list of the table fields + if ($key eq "HEAD") { + push @headcode, $value; + } + + # list of the table fields + if ($key eq "TAIL") { + push @tailcode, $value; + } + + # list of the table restrictions + # replace this with a flexible where statement? + if ($key eq "WHERE") { + ($field) = split (/,\s+/, $value, 1); + if ($VERBOSE) { printf "%-20s\n", $field; } + push @where, $field; + } + } + + # check on keys + &check_key ("MENU", "ipp.menu.dat"); + &check_key ("STYLE", "ipp.css"); + &check_key ("TABLE", ""); + &check_key ("TITLE", ""); + &check_key ("FILE", ""); + + # these are used internally (not just a replacement) + for ($i = 0; $i < @key; $i++) { + if ($key[$i] eq "MENU") { $MENU = $value[$i]; } + } + + # define FIELDS and WHERE strings, add to keypairs + &define_fields_count; + &define_fields_string (@field); + &define_where_string (@where); + + if (0) { + print STDERR "show: $show[0]\n"; + ($a, $b, $c) = &parse_label ($show[0]); + print STDERR "a: $a, b: $b, c: $c\n"; + + print STDERR "extras: $extras[0]\n"; + ($a, $b, $c) = &parse_label ($extras[0]); + print STDERR "a: $a, b: $b, c: $c\n"; + + print STDERR "show: $show[1]\n"; + ($a, $b, $c) = &parse_label ($show[1]); + print STDERR "a: $a, b: $b, c: $c\n"; + + print STDERR "extras: $extras[1]\n"; + ($a, $b, $c) = &parse_label ($extras[1]); + print STDERR "a: $a, b: $b, c: $c\n"; + exit 0; + } +} + +sub parse_template { + open (FILE, $template); + @list = ; + close (FILE); + + open (FILE, ">$output"); + + foreach $line (@list) { + + &check_keypairs; + + print FILE $line; + + # fill in table header + if ($line =~ m|// \*\* TABLE HEADER \*\*|) { + &write_table_header; + } + + # fill in table data + if ($line =~ m|// \*\* TABLE DATA \*\*|) { + &write_table_data; + } + + # fill in table query + if ($line =~ m|// \*\* TABLE QUERY \*\*|) { + &write_table_query; + } + + # fill in table restricts + if ($line =~ m|// \*\* TABLE RESTRICTIONS \*\*|) { + &write_table_restrict; + } + + # fill in head HTML or PHP code + if ($line =~ m|// \*\* HEAD CODE \*\*|) { + &write_inline_code (@headcode); + } + + # fill in tail HTML or PHP code + if ($line =~ m|// \*\* TAIL CODE \*\*|) { + &write_inline_code (@tailcode); + } + } + close (FILE); +} + +sub write_inline_code { + my (@code) = @_; + my ($i, $code, $type); + + for ($i = 0; $i < @code; $i++) { + ($type, $line) = split (" ", $code[$i], 2); + if ($type eq "PHP") { + printf FILE "$line\n"; + } + if ($type eq "HTML") { + printf FILE "?> $line ) for each field (show != none) +sub write_table_header { + + # add column sorting elements here + for ($i = 0; $i < @field; $i++) { + if ($show[$i] eq "none") { next; } + printf FILE "echo \" $name[$i] \\n\";\n"; + } +} + +# generate a WHERE test for each field (field != *) +sub write_table_restrict { + + if ($WHERE) { + printf FILE "\$WHERE = \"$WHERE\";\n"; + } + for ($i = 0; $i < @field; $i++) { + $value = $field[$i]; + if ($value eq "*") { next; } + printf FILE "\$WHERE = check_restrict ('$value', \$WHERE);\n"; + } +} + +sub write_table_data { + my ($i, $Nrow); + my ($label, $value, $string); + + for ($i = 0; $i < @field; $i++) { + ($label, $value, $string) = &parse_label ($show[$i]); + $Nrow = $count[$i]; + + # create the link variable if this entry should be linked + if ($label eq "none") { next; } + + if (($label eq "value") && !$link[$i]) { + # print value without link or image + if (! $value && ($field[$i] ne "*")) { $value = "\$row[$Nrow]"; } + print FILE " echo \" $value \\n\";\n"; + next; + } + + if (($label eq "value") && $link[$i]) { + # create the basic link variable + printf FILE " \$link = \"$link[$i]\" . \"?menu=$MENU&\" . \$ID['link'];\n"; + # add extra GET data to target + if ($extras[$i]) { &parse_extras ($extras[$i]); } + # print the actual table cell line with the link... + if (! $value && ($field[$i] ne "*")) { $value = "\$row[$Nrow]"; } + printf FILE " echo \" $value \\n\";\n"; + next; + } + + if (($label eq "image") && !$link[$i]) { + # print the actual table cell line with the image... + printf FILE " echo \"\\n\";\n"; + next; + } + + if (($label eq "image") && $link[$i]) { + # create the basic link + printf FILE " \$link = \"$link[$i]\" . \"?menu=$MENU&\" . \$ID['link'];\n"; + # add extra php data to target + if ($extras[$i]) { &parse_extras ($extras[$i]); } + # print the actual table cell line with the link... + printf FILE " echo \" \\n\";\n"; + next; + } + } +} + +sub write_table_query { + my ($i); + for ($i = 0; $i < @field; $i++) { + if ($show[$i] eq "none") { next; } + if ($field[$i] eq "*") { + # * fields create an empty cell + printf FILE "echo \"   \\n\";\n"; + } else { + printf FILE "write_query_row ('$field[$i]', $width[$i]);\n"; + } + } +} + +sub define_fields_string { + my (@array) = @_; + my ($i, $FIELDS); + + $FIELDS = "$array[0]"; + for ($i = 1; $i < @array; $i++) { + # skip * fields (not a valid query element + if ($array[$i] eq "*") { next; } + $FIELDS = "$FIELDS,$array[$i]"; + } + set_keypair ("FIELDS", $FIELDS); +} + +sub define_fields_count { + my ($i, $Nrow); + + @count = (); + + $Nrow = 0; + for ($i = 0; $i < @field; $i++) { + # skip * fields (not a valid query element + if ($field[$i] eq "*") { + $count[$i] = -1; + } else { + $count[$i] = $Nrow; + $Nrow ++; + } + } +} + +sub define_where_string { + my (@array) = @_; + my ($i, $FIELDS); + + if (@array == 0) { return; } + + $WHERE = "$array[0]"; + for ($i = 1; $i < @array; $i++) { + $WHERE = "$WHERE AND $array[$i]"; + } + + set_keypair ("WHERE", $WHERE); +} + +sub parse_extras { + my ($extras) = $_[0]; + my (@extfields); + my ($label, $value, $outline); + my ($i); + + # examine the extras and parse the embedded fields (comma-separated) + @extfields = split (/,/, $extras); + for ($i = 0; $i < @extfields; $i++) { + ($label, $value, $outline) = &parse_label ($extfields[$i]); + printf FILE " \$link = \$link . \"&$outline\";\n"; + } +} + +# parse strings of the form label=value +# if 'value' is of the form $field, try to match with +# a supplied DB field, and replace with $row[$n] if found +sub parse_label { + my ($string) = $_[0]; + my ($label, $value, $outline); + my ($Nrow, $i); + + # unless we replace the value with the db row element, return the original string + $outline = $string; + $label = $string; + $value = ""; + + # search for embedded table fields and replace with row[N] + if ($VERBOSE) { print STDERR "string: $string\n"; } + if ($string =~ m|\S+=\S+|) { + ($label, $value) = $string =~ m|(\S+)=(\S+)|; + if ($value =~ m|^\$|) { + MATCH_LABEL: + for ($i = 0; $i < @field; $i++) { + if ($field[$i] eq "*") { next; } + if ($value =~ m|^\$$field[$i]|) { + # print "field: $field[$i]\n"; + ($name, $extra) = $value =~ m|^\$($field[$i])\@(\S+)|; + # print "name: $name\n"; + # print "extra: $extra\n"; + # print "value: $value\n"; + + $Nrow = $count[$i]; + if ($extra) { + $value = "\$row[$Nrow]\@$extra"; + } else { + $value = "\$row[$Nrow]"; + } + # print "outval: $value\n"; + last MATCH_LABEL; + } + } + $outline = "$label=$value"; + } + } + return ($label, $value, $outline); +} + +sub init_key { + my ($key) = $_[0]; + + push @key, $key; + push @value, ""; +} + +sub set_keypair { + my ($i); + my ($key) = $_[0]; + my ($value) = $_[1]; + + for ($i = 0; $i < @key; $i++) { + if ($key eq $key[$i]) { + if ($value[$i] ne "") { die "key is multiply defined\n"; } + $value[$i] = $value; + if ($VERBOSE) { print STDERR "setting $key = $value\n"; } + return; + } + } +} + +sub check_key { + my ($i); + my ($key) = $_[0]; + my ($default) = $_[1]; + + for ($i = 0; $i < @key; $i++) { + if ($key eq $key[$i]) { + if ($VERBOSE) { print "found $key: $key[$i] -- $value[$i] (def: $default)\n"; } + if (($default eq "") && ($value[$i] eq "")) { die "missing value for required key $key[$i]\n"; } + if ($value[$i] eq "") { $value[$i] = $default; } + return; + } + } + die "unknown key $key\n"; +} + +sub check_keypairs { + my ($i); + for ($i = 0; $i < @key; $i++) { + if ($VERBOSE) { print "$key[$i] -- $value[$i]\n"; } + if ($line =~ m|\$$key[$i]|) { + if ($value[$i] eq "") { die "missing value for required key $key[$i]\n"; } + $line =~ s|\$$key[$i]|$value[$i]|g; + } + } +} + +# we need to find the structure size, including padding +# i'm not sure I know the answer to this: it is probably +# the total number of bytes rounded up to the largest +# data item in the structure (ie, 8 for a double, etc) +# if we have the size, then we can double check the structure +# against the expectation at runtime. for the moment, +# calculate by hand and add to def.d file + Index: /branches/rel-1-1/ippMonitor/raw/DetrendSteps.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/DetrendSteps.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/DetrendSteps.php (revision 12167) @@ -0,0 +1,24 @@ +\n + +The pages in this section allow you to examine the master detrend +images and the processing steps involved in their creation. You may +search through the detrend images which have been accepted by +the detrend analysis system by selecting the Master Detrend Images tab. + +"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/DiffSteps.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/DiffSteps.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/DiffSteps.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/ImfileTables.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ImfileTables.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ImfileTables.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/LoadSetup.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/LoadSetup.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/LoadSetup.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/Login.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/Login.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/Login.php (revision 12167) @@ -0,0 +1,61 @@ +\n"; + menu_end (); + exit (); +} + +if ($_SERVER[REQUEST_METHOD] == 'GET') { + + $ID = checkID (); + + menu ('ipp.menu.dat', 'Login', 'ipp.css', $ID['link'], $ID['proj']); + + $pass = $ID['pass']; + $name = $ID['name']; + echo "

You are currently logged in as $name.
\n"; + echo "Click here to log out.\n"; + echo "

\n"; + echo "\n"; + echo "\n"; + echo "

\n\n"; + + menu_end (); + exit (); +} + +if ($_SERVER[REQUEST_METHOD] == 'POST') { + if (key_exists (login, $_POST)) { + + $ID = checkLogin (); + + menu ('ipp.menu.dat', 'Login', 'ipp.css', $ID['link'], $ID['proj']); + echo "Login Accepted\n"; + menu_end(); + exit (); + } + + if (key_exists (logout, $_POST)) { + menu ('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + echo "You are now logged out
\n"; + logintext (); + loginform (); + menu_end (); + exit (); + } + + // missing a valid POST state (login or logout) + menu ('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + echo "Invalid Client Post Request
\n"; + foreach ($_POST as $key => $value) { + echo "$key : $value
\n"; + } + menu_end (); + exit (); +} + +?> Index: /branches/rel-1-1/ippMonitor/raw/ScienceSteps.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ScienceSteps.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ScienceSteps.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/SelectProject.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/SelectProject.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/SelectProject.php (revision 12167) @@ -0,0 +1,37 @@ +\n"; + menu_end (); + exit (); +} + +$ID = checkID (); + +if ($_SERVER[REQUEST_METHOD] == 'GET') { + projectform ($ID); +} + +if ($_SERVER[REQUEST_METHOD] == 'POST') { + + if (key_exists (project, $_POST)) { + $myProj = $_POST[proj]; + $ID['proj'] = $myProj; + // validate the existence of the project + + // update ID['link'] + // $link is attached to every nav link + $ID['link'] = "pass=" . $ID['pass']; + if ($ID['proj']) { + $ID['link'] = $ID['link'] . "&proj=" . $ID['proj']; + } + + menu ('ipp.menu.dat', 'Select Project', 'ipp.css', $ID['link'], $ID['proj']); + echo "New project is : $myProj
\n"; + menu_end(); + } +} +?> Index: /branches/rel-1-1/ippMonitor/raw/StackSteps.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/StackSteps.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/StackSteps.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/WarpSteps.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/WarpSteps.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/WarpSteps.php (revision 12167) @@ -0,0 +1,17 @@ +\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/getimage.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/getimage.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/getimage.php (revision 12167) @@ -0,0 +1,65 @@ +"; + +# $basename may contain filename@filerule +$basename = strtok($_GET[name],"@"); +$filerule = strtok("@"); + +# echo "basename: $basename
"; +# echo "filerule: $filerule
"; + +# need to supply the camera as well... +# exec ("ipp_filerule.pl --site=$SITE $basename", $output, $status); + +if ($filerule) { + if ($filerule == "PPIMAGE.JPEG1") { + $basename = "$basename.b1.jpg"; + } + if ($filerule == "PPIMAGE.JPEG2") { + $basename = "$basename.b2.jpg"; + } +} + +$basename = escapeshellarg($basename); +$basename = str_replace ('..','',$basename); + +exec ("ipp_datapath.pl --site=$SITE $basename", $output, $status); + +$filename = $output[0]; +if ($status) { + $filename = $MISSING; +} + +if (0) { + echo "basename: $basename
"; + echo "result: $result
"; + echo "output: $output[0]
"; + echo "status: $status
"; + echo "filename: $filename
"; + exit (); +} + +$file = fopen ($filename, "r"); +if ($file) { + header ('Content-Type: image/jpg'); + fpassthru ($file); +} +exit (); +?> Index: /branches/rel-1-1/ippMonitor/raw/ipp.copy.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.copy.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.copy.dat (revision 12167) @@ -0,0 +1,38 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutops | menutops | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | Raw Detrend Exp | rawDetrendExp.php +menulink | menuselect | link | Raw Science Exp | rawScienceExp.php +menulink | menuselect | link | Raw Unknown Exp | rawUnknownExp.php +menutop | menutop | plain |   | +menulink | menuselect | link | Summit Exp | summitExp.php +menulink | menuselect | link | Copy Pending Exp | pzPendingExp.php +menulink | menuselect | link | New Exp | newExp.php +menutop | menutop | plain |   | +menulink | menuselect | link | Failed Raw Imfiles | rawImfile_failed.php +menulink | menuselect | link | Failed Raw Exp | rawExp_failed.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.css =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.css (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.css (revision 12167) @@ -0,0 +1,81 @@ + +/* internal link line: c0d0d0 : d8d0f0 + external link line: 303070 + border: 0080c0 + */ + +body { bgcolor: #a0d0e0; background-color: #a0d0e0; padding: 5px; margin: 5px } + +a:link, a:visited, a:active { text-decoration: underline; font-weight: bold; color: #ff0000 } + +a.button { text-decoration: none; font-weight: bold; color: #000000; background: #0080c0} +a.menutop { text-decoration: none; font-weight: bold; color: #ffffff} +a.menutops { text-decoration: none; font-weight: bold; color: #80f0ff} +a.menuext { text-decoration: none; font-weight: bold; color: #ffffff} +a.menulink { text-decoration: none; font-weight: normal; color: #000000} +a.menuselect { text-decoration: none; font-weight: normal; color: #0000ff} +a.piclink { text-decoration: none; font-weight: normal; color: #0080c0} + +td.menutop { text-align: left; background: #0080c0; font-size: small; color: #ffffff; padding: 2px; } +td.menutops { text-align: left; background: #0080c0; font-size: small; color: #000000; padding: 2px; } +td.menuext { text-align: left; background: #303070; font-size: small; color: #ffffff; padding: 2px; } +td.menulink { text-align: left; background: #d0d0ff; font-size: small; color: #000000; padding: 2px; font-weight: normal; text-indent: 0px; } +td.menuselect { text-align: left; background: #d0d0ff; font-size: small; color: #ff0000; padding: 2px; font-weight: normal; text-indent: 0px; } +td.menuline { text-align: left; background: #d0d0ff; font-size: small; color: #000000; padding: 2px; font-weight: normal; text-indent: 0px; } + +td.picture { text-align: left; background: #00ffff; font-size: small; color: #ff0000; padding: 0px; text-indent: 2px; font-weight: normal; } +td.piclink { text-align: left; background: #0080c0; font-size: small; color: #ff0000; padding: 0px; text-indent: 0px; font-weight: normal; } + +table.page { border: 0px solid #0080c0; background: #a0d0e0; padding: 0px} + +td.title { background-color: #ff0000; padding: 5px; font-size: x-large; text-align: left; vertical-align: top} + +td.body { + text-align: left; + font-size: normal; + font-weight: normal; + vertical-align: top; + background: #d0d0ff; + background-color: #d0d0ff; + border: 3px solid #0080c0; + padding: 5px; +} + +table.menu { text-align: left; + font-size: small; + font-weight: normal; + background: #ff0000; + border: 3px solid #0080c0; + padding: 0px; +} + +table.list { text-align: left; + font-size: small; + font-weight: normal; + background: #d0d0ff; + border: 2px solid #ffffff; + padding: 0px; +} + +td.list { + text-align: left; + font-size: normal; + font-weight: normal; + vertical-align: top; + background: #d0d0ff; + background-color: #d0d0ff; + border: 2px solid #000000; + padding: 2px; +} + +th.list { + text-align: left; + font-size: normal; + font-weight: bold; + vertical-align: top; + background: #d0d0ff; + background-color: #d0d0ff; + border: 2px solid #000000; + padding: 2px; +} + Index: /branches/rel-1-1/ippMonitor/raw/ipp.detrend.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.detrend.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.detrend.dat (revision 12167) @@ -0,0 +1,37 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutops | menutops | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | Detrend Frames | masterDetrendFrames.php +menulink | menuselect | link | Detrend Runs | detRun.php +menulink | menuselect | link | Detrend Iterations | detRunSummary.php +menulink | menulink | plain |   | +menulink | menuselect | link | Raw Detrend Exp | rawDetrendExp_detrend.php +menulink | menuselect | link | Input Detrend Exp | detInputExp.php +menulink | menuselect | link | Proc Detrend Exp | detProcessedExp.php +menulink | menuselect | link | Norm Detrend Exp | detNormalizedExp.php +menulink | menuselect | link | Resid Detrend Exp | detResidExp.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.diff.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.diff.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.diff.dat (revision 12167) @@ -0,0 +1,31 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutops | menutops | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | Diff Run | diffRun.php +menulink | menuselect | link | Diff Input Skyfile | diffInputSkyfile.php +menulink | menuselect | link | Diff Skyfile | diffSkyfile.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.imfiles.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.imfiles.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.imfiles.dat (revision 12167) @@ -0,0 +1,43 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutops | menutops | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | newImfile | newImfile.php +menulink | menuselect | link | rawImfile | rawImfile.php +menulink | menuselect | link | detProcessedImfile | detProcessedImfile.php +menulink | menuselect | link | detStackedImfile | detStackedImfile.php +menulink | menuselect | link | detNormalizedImfile | detNormalizedImfile.php +menulink | menuselect | link | detNormalizedStatImfile | detNormalizedStatImfile.php +menulink | menuselect | link | detResidImfile | detResidImfile.php +menulink | menuselect | link | masterDetrendImfiles | masterDetrendImfiles.php +menulink | menuselect | link | pzPendingImfile | pzPendingImfile.php +menulink | menuselect | link | chipPendingImfile | chipPendingImfile.php +menulink | menuselect | link | chipProcessedImfile | chipProcessedImfile.php + +menutop | menutop | plain |   | +menutop | menutop | plain | External Links | none +menutop | menutop | link | test page | phptest.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.menu.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.menu.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.menu.dat (revision 12167) @@ -0,0 +1,26 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.php (revision 12167) @@ -0,0 +1,326 @@ +Welcome to the IPP status pages.

', "\n"; + echo 'From these pages, you may examine summary information about the IPP processing results.
', "\n"; + echo 'In order to continue, it is necessary to login as an authorized IPP user.

', "\n\n"; +} + +function loginform () { + echo '
', "\n"; + echo 'Username:
', "\n"; + echo 'Password:
', "\n"; + echo '', "\n"; + echo '
', "\n\n"; +} + +function projectform ($ID) { + menu ('ipp.menu.dat', 'Select Project', 'ipp.css', $ID['link'], $ID['proj']); + echo "

Please select the project of interest

\n"; + echo "
\n"; + echo "Project:
\n"; + echo "\n"; + + $pass = $ID['pass']; + echo "\n"; + echo "
\n"; + + menu_end (); +} + +function dbconnect ($database) { + + // connect to the database + require_once('DB.php'); + $db = DB::connect("mysql://ipp:ipp@alala/$database"); + if (DB::iserror($db)) { + echo "error accessing database
\n"; + echo "tried mysql://ipp:ipp@localhost/ipp
\n"; + menu_end(); + } + return $db; +} + +// there are three pieces of data that are used to define a user: +// - name (the username: available somewhere: db table?) +// - proj (defines which database is being used) +// - pass (NOT the same as the user password: randomly generated for the session and given a timeout) + +// have this function take the current menu and style? +function checkLogin () { + + $username = $_POST[username]; + $password = $_POST[password]; + + $db = dbconnect('ippadmin'); + + // make this a DB lookup + $sql = "SELECT username FROM users WHERE username = '$username' AND password = '$password'"; + + $qry = $db->query($sql); + if (DB::iserror($db)) { + echo "error reading users table
\n"; + echo "Login Failed, please try again
\n"; + loginform (); + menu_end(); + } + + $success = $qry->fetchInto($row); + if (!$success) { + menu ('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + echo "Login Failed, please try again
\n"; + loginform (); + menu_end (); + exit (); + } + + // generate an random ephemeral ID + $ID['name'] = $username; + $ID['proj'] = ""; + + // generate a cookie for the user + $sql = "SELECT username,cookie FROM cookies WHERE username = '$username'"; + $qry = $db->query($sql); + if (DB::iserror($db)) { + echo "Cookie Failed, please try again
\n"; + menu_end(); + } + + if ($qry->fetchInto($row)) { + $ID['pass'] = $row[1]; + } else { + $cookie = rand(0,100000); + $ID['pass'] = $cookie; + $sql = "INSERT into cookies (username, cookie) values ('$username', '$cookie')"; + $qry = $db->query($sql); + if (DB::iserror($db)) { + echo "Cookie Failed, please try again
\n"; + menu_end(); + } + } + + // the link is attached to every nav link + $ID['link'] = "pass=" . $ID['pass']; + if ($ID['proj']) { + $ID['link'] = $link . "&proj=" . $ID['proj']; + } + + return $ID; +} + +function checkID () { + + $VERBOSE = 0; + + // check for valid server method + if (($_SERVER[REQUEST_METHOD] != 'POST') && ($_SERVER[REQUEST_METHOD] != 'GET')) { + menu ('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + echo "Invalid Client Request
\n"; + menu_end (); + exit (); + } + + // look for pass & proj in appropriate location + if ($_SERVER[REQUEST_METHOD] == 'GET') { + $ID['pass'] = $_GET[pass]; + $ID['proj'] = $_GET[proj]; + $ID['menu'] = $_GET[menu]; + $ID['from'] = $_GET[from]; + + if ($VERBOSE) { + echo "using GET: ", $ID['pass'], $ID['proj'], "
\n"; + echo "GET list
\n"; + foreach ($_GET as $key => $value) { + echo "$key : $value
\n"; + } + } + } + if ($_SERVER[REQUEST_METHOD] == 'POST') { + $ID['pass'] = $_POST[pass]; + $ID['proj'] = $_POST[proj]; + $ID['menu'] = $_POST[menu]; + $ID['from'] = $_POST[from]; + + if ($VERBOSE) { + echo "using POST: ", $ID['pass'], $ID['proj'], "
\n"; + echo "POST list
\n"; + foreach ($_POST as $key => $value) { + echo "$key : $value
\n"; + } + } + } + + // user is not logged in at all + if ($ID['pass'] == "") { + menu('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + logintext (); + loginform (); + menu_end (); + } + + $db = dbconnect ('ippadmin'); + + // make this a DB lookup + $pass = $ID['pass']; + $sql = "SELECT username FROM cookies WHERE cookie = '$pass'"; + $qry = $db->query($sql); + if (DB::iserror($db)) { + echo "error reading users table
\n"; + echo "Login Failed, please try again
\n"; + loginform (); + menu_end(); + } + + # $success = (($username == "eugene") && ($password == "test")); + $success = $qry->fetchInto($row); + if (! $success) { + menu('ipp.menu.dat', 'Login', 'ipp.css', '', ''); + echo "unknown user, please login again
\n"; + loginform (); + menu_end (); + } + // use the pass value to find the corresponding user + $ID['name'] = $row[0]; + + // $link is attached to every nav link + $ID['link'] = "pass=" . $ID['pass']; + if ($ID['proj']) { + $ID['link'] = $ID['link'] . "&proj=" . $ID['proj']; + } + + return $ID; +} + +function menu ($source, $title, $sheet, $append, $project) { + + echo " $title \n\n"; + echo "\n"; + echo "\n"; + + $root = "/ippMonitor"; + + if (! $project) { $project = "none"; } + + $file = fopen ($source, "r"); + + echo "
\n"; + echo "\n"; + + while ($line = fgetcsv ($file, 1024, "|")) { + if (count($line) != 5) continue; + if (ereg ('^[:blank:]*#', $line[0])) continue; + + $type = trim($line[2]); + $name = trim($line[3]); + $base = trim($line[4]); + + if (preg_match ('|\$PROJECT|', $name)) { + $name = preg_replace ('|\$PROJECT|', $project, $name); + } + + if ($append) { + $link = $base . "?" . $append; + } else { + $link = $base; + } + + $this = $_SERVER[SCRIPT_NAME]; + $page = "$root/" . $base; + if ($page == $this) { + $style = trim($line[1]); + } else { + $style = trim($line[0]); + } + + switch ($type) { + case 'plain': + echo "\n"; + break; + case 'picture': + echo "\n"; + break; + case 'piclink': + echo "\n"; + break; + default: + echo "\n"; + break; + } + } + fclose ($file); + echo '
$name
$name
', "\n\n"; +} + +function menu_end () { + echo "
\n"; + echo "\n\n"; + exit (); +} + +function check_restrict ($key, $where) { + $htmlkey = preg_replace ('|\.|', '_', $key); + if ($_SERVER[REQUEST_METHOD] == 'GET') { + $value = $_GET[$htmlkey]; + // echo "using GET: $value
\n"; + } else { + $value = $_POST[$htmlkey]; + // echo "using POST: $value
\n"; + } + // echo "value: $value
\n"; + if ($value != "") { + if ($where) { + $where = $where . " AND $key = '$value'"; + // echo "where 1: $where
\n"; + } else { + $where = "$key = '$value'"; + // echo "where 2: $where
\n"; + } + } + return $where; +} + +function write_query_row ($key, $width) { + $htmlkey = preg_replace ('|\.|', '_', $key); + $value = $_POST[$htmlkey]; + if (($_SERVER[REQUEST_METHOD] == 'POST') && $value) { + echo " \n"; + } else { + echo " \n"; + } +} + +// expect image supplied with key=name +// this function should define matching hidden inputs in the form +function insert_image ($key) { + + if ($_SERVER[REQUEST_METHOD] == 'GET') { + $name = $_GET[$key]; + } else { + $name = $_POST[$key]; + } + + if ($name) { + echo "\n"; + } +} + +// expect image supplied with key=name +// this function should define matching hidden inputs in the form +function insert_backref ($page, $key, $link) { + + if ($_SERVER[REQUEST_METHOD] == 'GET') { + $name = $_GET[$key]; + } else { + $name = $_POST[$key]; + } + + if ($name) { + echo "back to $name
\n"; + } +} + +// $myPage = $_SERVER[SCRIPT_NAME] . "?pass=$pass"; + +?> Index: /branches/rel-1-1/ippMonitor/raw/ipp.science.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.science.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.science.dat (revision 12167) @@ -0,0 +1,35 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutops | menutops | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | plain | Guide Processed Exp | +menulink | menuselect | link | Chip Processed Exp | chipProcessedExp.php +menulink | menuselect | link | Cam Processed Exp | camProcessedExp.php +menutop | menutop | plain |   | +menulink | menuselect | link | Guide Pending Exp | guidePendingExp.php +menulink | menuselect | link | Chip Pending Exp | chipPendingExp.php +menulink | menuselect | link | Cam Pending Exp | camPendingExp.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.stack.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.stack.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.stack.dat (revision 12167) @@ -0,0 +1,31 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutop | menutop | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutops | menutops | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | Stack Run | stackRun.php +menulink | menuselect | link | Stack Input Skyfile | stackInputSkyfile.php +menulink | menuselect | link | Stack Skyfile | stackSumSkyfile.php Index: /branches/rel-1-1/ippMonitor/raw/ipp.warp.dat =================================================================== --- /branches/rel-1-1/ippMonitor/raw/ipp.warp.dat (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/ipp.warp.dat (revision 12167) @@ -0,0 +1,32 @@ +# style | select-style | type | menu line | link page + +# we have four valid menu types: picture, piclink, link, plain +# picture | picture | picture | PScolorlogo2.jpg | none +# piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +# menulink | menuselect | link | other page | notest.php +# menutop | menutop | plain | foo bar | none + +piclink | piclink | piclink | PScolorlogo2.jpg | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS public | http://panstarrs.ifa.hawaii.edu +menuext | menuext | link | Pan-STARRS project | http://panstarrs.ifa.hawaii.edu/project +menuext | menuext | link | Pan-STARRS IPP | http://panstarrs.ifa.hawaii.edu/project/IPP + +menutop | menutop | plain |   | +menulink | menuselect | link | Login | Login.php +menulink | menuselect | link | Select Project | SelectProject.php +menulink | menuselect | link | [$PROJECT] | SelectProject.php + +menutop | menutop | plain |   | +menutop | menutop | link | Load and Setup | LoadSetup.php +menutop | menutop | link | Science Steps | ScienceSteps.php +menutop | menutop | link | Detrend Steps | DetrendSteps.php +menutop | menutop | link | Imfile Tables | ImfileTables.php +menutops | menutops | link | Warp Steps | WarpSteps.php +menutop | menutop | link | Diff Steps | DiffSteps.php +menutop | menutop | link | Stack Steps | StackSteps.php + +menutop | menutop | plain |   | +menulink | menuselect | link | Warp Run | warpRun.php +menulink | menuselect | link | Warp Input Exp | warpInputExp.php +menulink | menuselect | link | Warp Skycell Map | warpSkycellMap.php +menulink | menuselect | link | Warp Skyfile | warpSkyfile.php Index: /branches/rel-1-1/ippMonitor/raw/masterDetrendImfiles.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/masterDetrendImfiles.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/masterDetrendImfiles.php (revision 12167) @@ -0,0 +1,95 @@ + Master Detrend Imfiles

"; + +// define restrictiosn to the queries +// ** TABLE RESTRICTIONS ** +$WHERE = check_restrict ('det_id', $WHERE); +$WHERE = check_restrict ('iteration', $WHERE); +$WHERE = check_restrict ('uri', $WHERE); + +// query the database +if ($WHERE) { + $sql = "SELECT det_id,iteration,uri FROM detNormalizedImfile WHERE $WHERE UNION SELECT det_id,iteration,uri FROM detStackedImfile WHERE normalize = 0 AND $WHERE LIMIT 20"; +} else { + $sql = "SELECT det_id,iteration,uri FROM detNormalizedImfile UNION SELECT det_id,iteration,uri FROM detStackedImfile WHERE normalize = 0 LIMIT 20"; +} + +$qry = $db->query($sql); +if (DB::iserror($db)) { + echo "error reading detStackedImfile table
\n"; + menu_end(); +} + +// ** HEAD CODE ** + +// set up the table and form +echo "
\n"; + +echo "\n"; +echo "\n"; +// ** TABLE HEADER ** +echo "\n"; +echo "\n"; +echo "\n"; +// echo "\n"; +echo "\n"; + +// list the results +while ($qry->fetchInto($row)) { + // $link = "masterDetrendImfiles.php" . "?expID=" . $row[0] . "&" . $ID['link']; + + echo "\n"; + // ** TABLE DATA ** + echo "\n"; + echo "\n"; + echo "\n"; + // echo "\n"; + // echo "\n"; + echo "\n"; +} + +// query restriction form +echo "\n"; +// echo "\n"; +// ** TABLE QUERY ** +write_query_row ('det_id', 7); +write_query_row ('iteration', 5); +write_query_row ('uri', 5); +echo "\n"; + +// close the table and form +echo "
det_id iter uri FIELD
$row[0] $row[1] $row[2] $row[0] $row[1]
\n"; +echo "\n"; +$pass = $ID['pass']; +$proj = $ID['proj']; +$menu = $ID['menu']; +echo "\n"; +echo "\n"; +echo "\n"; +echo "
\n"; + +// ** TAIL CODE ** + +echo " WHERE: $WHERE

\n"; +echo " SQL: $sql

\n"; + +menu_end(); + +?> Index: /branches/rel-1-1/ippMonitor/raw/phptest.php =================================================================== --- /branches/rel-1-1/ippMonitor/raw/phptest.php (revision 12167) +++ /branches/rel-1-1/ippMonitor/raw/phptest.php (revision 12167) @@ -0,0 +1,25 @@ +\n"; +} + +echo "get list
\n"; +foreach ($_GET as $key => $value) { + echo "$key : $value
\n"; +} + +$value = system ("ls /etc", $status); +echo "status: $status\n"; + +menu_end(); +?> Index: /branches/rel-1-1/ippScripts/.cvsignore =================================================================== --- /branches/rel-1-1/ippScripts/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippScripts/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Build +META.yml +Makefile +Makefile.PL +_build +blib Index: /branches/rel-1-1/ippScripts/Build.PL =================================================================== --- /branches/rel-1-1/ippScripts/Build.PL (revision 12167) +++ /branches/rel-1-1/ippScripts/Build.PL (revision 12167) @@ -0,0 +1,50 @@ +use Module::Build; +# See perldoc Module::Build for details of how this works + +Module::Build->new( + module_name => 'ippscripts', + dist_version => '0.01', + author => 'Joshua Hoblitt ', + license => 'gpl', + create_makefile_pl => 'passthrough', + requires => { + 'IPC::Cmd' => 0, + 'IPC::Run' => 0, + 'PS::IPP::Config' => 0, + 'PS::IPP::Metadata::Config' => 0, + 'Statistics::Descriptive' => 0, + 'Cache::File' => 0, + 'Storable' => 0, + }, + recommends => { + 'Test::Distribution' => '1.22', + }, + script_files => [qw( + scripts/ipp_datapath.pl + scripts/ipp_filename.pl + scripts/mdc2list.pl + scripts/register_imfile.pl + scripts/register_exp.pl + scripts/detrend_process_imfile.pl + scripts/detrend_process_exp.pl + scripts/detrend_stack.pl + scripts/detrend_norm_calc.pl + scripts/detrend_norm_apply.pl + scripts/detrend_norm_exp.pl + scripts/detrend_resid.pl + scripts/detrend_reject_imfile.pl + scripts/detrend_reject_exp.pl + scripts/chip_imfile.pl + scripts/camera_exp.pl + scripts/warp_overlap.pl + scripts/warp_skycell.pl + scripts/diff_skycell.pl + scripts/stack_skycell.pl + scripts/ipp_serial_inject.pl + scripts/ipp_serial_inject_mosaic.pl + scripts/ipp_serial_register.pl + scripts/ipp_serial_detrend.pl + scripts/ipp_serial_chip.pl + scripts/ipp_serial_camera.pl + )], + )->create_build_script; Index: /branches/rel-1-1/ippScripts/Changes =================================================================== --- /branches/rel-1-1/ippScripts/Changes (revision 12167) +++ /branches/rel-1-1/ippScripts/Changes (revision 12167) @@ -0,0 +1,6 @@ +Revision history for Perl module ippScripts + +0.01 Thu Feb 23 13:55:57 2006 + - help scripts split out of the ippTools package + + Index: /branches/rel-1-1/ippScripts/LICENSE =================================================================== --- /branches/rel-1-1/ippScripts/LICENSE (revision 12167) +++ /branches/rel-1-1/ippScripts/LICENSE (revision 12167) @@ -0,0 +1,260 @@ +The General Public License (GPL) +Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc. 675 Mass Ave, +Cambridge, MA 02139, USA. Everyone is permitted to copy and distribute +verbatim copies of this license document, but changing it is not allowed. + +Preamble + +The licenses for most software are designed to take away your freedom to share +and change it. By contrast, the GNU General Public License is intended to +guarantee your freedom to share and change free software--to make sure the +software is free for all its users. This General Public License applies to most of +the Free Software Foundation's software and to any other program whose +authors commit to using it. (Some other Free Software Foundation software is +covered by the GNU Library General Public License instead.) You can apply it to +your programs, too. + +When we speak of free software, we are referring to freedom, not price. Our +General Public Licenses are designed to make sure that you have the freedom +to distribute copies of free software (and charge for this service if you wish), that +you receive source code or can get it if you want it, that you can change the +software or use pieces of it in new free programs; and that you know you can do +these things. + +To protect your rights, we need to make restrictions that forbid anyone to deny +you these rights or to ask you to surrender the rights. These restrictions +translate to certain responsibilities for you if you distribute copies of the +software, or if you modify it. + +For example, if you distribute copies of such a program, whether gratis or for a +fee, you must give the recipients all the rights that you have. You must make +sure that they, too, receive or can get the source code. And you must show +them these terms so they know their rights. + +We protect your rights with two steps: (1) copyright the software, and (2) offer +you this license which gives you legal permission to copy, distribute and/or +modify the software. + +Also, for each author's protection and ours, we want to make certain that +everyone understands that there is no warranty for this free software. If the +software is modified by someone else and passed on, we want its recipients to +know that what they have is not the original, so that any problems introduced by +others will not reflect on the original authors' reputations. + +Finally, any free program is threatened constantly by software patents. We wish +to avoid the danger that redistributors of a free program will individually obtain +patent licenses, in effect making the program proprietary. To prevent this, we +have made it clear that any patent must be licensed for everyone's free use or +not licensed at all. + +The precise terms and conditions for copying, distribution and modification +follow. + +GNU GENERAL PUBLIC LICENSE +TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND +MODIFICATION + +0. This License applies to any program or other work which contains a notice +placed by the copyright holder saying it may be distributed under the terms of +this General Public License. The "Program", below, refers to any such program +or work, and a "work based on the Program" means either the Program or any +derivative work under copyright law: that is to say, a work containing the +Program or a portion of it, either verbatim or with modifications and/or translated +into another language. (Hereinafter, translation is included without limitation in +the term "modification".) Each licensee is addressed as "you". + +Activities other than copying, distribution and modification are not covered by +this License; they are outside its scope. The act of running the Program is not +restricted, and the output from the Program is covered only if its contents +constitute a work based on the Program (independent of having been made by +running the Program). Whether that is true depends on what the Program does. + +1. You may copy and distribute verbatim copies of the Program's source code as +you receive it, in any medium, provided that you conspicuously and appropriately +publish on each copy an appropriate copyright notice and disclaimer of warranty; +keep intact all the notices that refer to this License and to the absence of any +warranty; and give any other recipients of the Program a copy of this License +along with the Program. + +You may charge a fee for the physical act of transferring a copy, and you may at +your option offer warranty protection in exchange for a fee. + +2. You may modify your copy or copies of the Program or any portion of it, thus +forming a work based on the Program, and copy and distribute such +modifications or work under the terms of Section 1 above, provided that you also +meet all of these conditions: + +a) You must cause the modified files to carry prominent notices stating that you +changed the files and the date of any change. + +b) You must cause any work that you distribute or publish, that in whole or in +part contains or is derived from the Program or any part thereof, to be licensed +as a whole at no charge to all third parties under the terms of this License. + +c) If the modified program normally reads commands interactively when run, you +must cause it, when started running for such interactive use in the most ordinary +way, to print or display an announcement including an appropriate copyright +notice and a notice that there is no warranty (or else, saying that you provide a +warranty) and that users may redistribute the program under these conditions, +and telling the user how to view a copy of this License. (Exception: if the +Program itself is interactive but does not normally print such an announcement, +your work based on the Program is not required to print an announcement.) + +These requirements apply to the modified work as a whole. If identifiable +sections of that work are not derived from the Program, and can be reasonably +considered independent and separate works in themselves, then this License, +and its terms, do not apply to those sections when you distribute them as +separate works. But when you distribute the same sections as part of a whole +which is a work based on the Program, the distribution of the whole must be on +the terms of this License, whose permissions for other licensees extend to the +entire whole, and thus to each and every part regardless of who wrote it. + +Thus, it is not the intent of this section to claim rights or contest your rights to +work written entirely by you; rather, the intent is to exercise the right to control +the distribution of derivative or collective works based on the Program. + +In addition, mere aggregation of another work not based on the Program with the +Program (or with a work based on the Program) on a volume of a storage or +distribution medium does not bring the other work under the scope of this +License. + +3. You may copy and distribute the Program (or a work based on it, under +Section 2) in object code or executable form under the terms of Sections 1 and 2 +above provided that you also do one of the following: + +a) Accompany it with the complete corresponding machine-readable source +code, which must be distributed under the terms of Sections 1 and 2 above on a +medium customarily used for software interchange; or, + +b) Accompany it with a written offer, valid for at least three years, to give any +third party, for a charge no more than your cost of physically performing source +distribution, a complete machine-readable copy of the corresponding source +code, to be distributed under the terms of Sections 1 and 2 above on a medium +customarily used for software interchange; or, + +c) Accompany it with the information you received as to the offer to distribute +corresponding source code. (This alternative is allowed only for noncommercial +distribution and only if you received the program in object code or executable +form with such an offer, in accord with Subsection b above.) + +The source code for a work means the preferred form of the work for making +modifications to it. For an executable work, complete source code means all the +source code for all modules it contains, plus any associated interface definition +files, plus the scripts used to control compilation and installation of the +executable. However, as a special exception, the source code distributed need +not include anything that is normally distributed (in either source or binary form) +with the major components (compiler, kernel, and so on) of the operating system +on which the executable runs, unless that component itself accompanies the +executable. + +If distribution of executable or object code is made by offering access to copy +from a designated place, then offering equivalent access to copy the source +code from the same place counts as distribution of the source code, even though +third parties are not compelled to copy the source along with the object code. + +4. You may not copy, modify, sublicense, or distribute the Program except as +expressly provided under this License. Any attempt otherwise to copy, modify, +sublicense or distribute the Program is void, and will automatically terminate +your rights under this License. However, parties who have received copies, or +rights, from you under this License will not have their licenses terminated so long +as such parties remain in full compliance. + +5. You are not required to accept this License, since you have not signed it. +However, nothing else grants you permission to modify or distribute the Program +or its derivative works. These actions are prohibited by law if you do not accept +this License. Therefore, by modifying or distributing the Program (or any work +based on the Program), you indicate your acceptance of this License to do so, +and all its terms and conditions for copying, distributing or modifying the +Program or works based on it. + +6. Each time you redistribute the Program (or any work based on the Program), +the recipient automatically receives a license from the original licensor to copy, +distribute or modify the Program subject to these terms and conditions. You +may not impose any further restrictions on the recipients' exercise of the rights +granted herein. You are not responsible for enforcing compliance by third parties +to this License. + +7. If, as a consequence of a court judgment or allegation of patent infringement +or for any other reason (not limited to patent issues), conditions are imposed on +you (whether by court order, agreement or otherwise) that contradict the +conditions of this License, they do not excuse you from the conditions of this +License. If you cannot distribute so as to satisfy simultaneously your obligations +under this License and any other pertinent obligations, then as a consequence +you may not distribute the Program at all. For example, if a patent license would +not permit royalty-free redistribution of the Program by all those who receive +copies directly or indirectly through you, then the only way you could satisfy +both it and this License would be to refrain entirely from distribution of the +Program. + +If any portion of this section is held invalid or unenforceable under any particular +circumstance, the balance of the section is intended to apply and the section as +a whole is intended to apply in other circumstances. + +It is not the purpose of this section to induce you to infringe any patents or other +property right claims or to contest validity of any such claims; this section has +the sole purpose of protecting the integrity of the free software distribution +system, which is implemented by public license practices. Many people have +made generous contributions to the wide range of software distributed through +that system in reliance on consistent application of that system; it is up to the +author/donor to decide if he or she is willing to distribute software through any +other system and a licensee cannot impose that choice. + +This section is intended to make thoroughly clear what is believed to be a +consequence of the rest of this License. + +8. If the distribution and/or use of the Program is restricted in certain countries +either by patents or by copyrighted interfaces, the original copyright holder who +places the Program under this License may add an explicit geographical +distribution limitation excluding those countries, so that distribution is permitted +only in or among countries not thus excluded. In such case, this License +incorporates the limitation as if written in the body of this License. + +9. The Free Software Foundation may publish revised and/or new versions of the +General Public License from time to time. Such new versions will be similar in +spirit to the present version, but may differ in detail to address new problems or +concerns. + +Each version is given a distinguishing version number. If the Program specifies a +version number of this License which applies to it and "any later version", you +have the option of following the terms and conditions either of that version or of +any later version published by the Free Software Foundation. If the Program does +not specify a version number of this License, you may choose any version ever +published by the Free Software Foundation. + +10. If you wish to incorporate parts of the Program into other free programs +whose distribution conditions are different, write to the author to ask for +permission. For software which is copyrighted by the Free Software Foundation, +write to the Free Software Foundation; we sometimes make exceptions for this. +Our decision will be guided by the two goals of preserving the free status of all +derivatives of our free software and of promoting the sharing and reuse of +software generally. + +NO WARRANTY + +11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS +NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY +APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE +COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM +"AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR +IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE +ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE +PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, +YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR +CORRECTION. + +12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED +TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY +WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS +PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES +ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM +(INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING +RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY +OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS +BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. + +END OF TERMS AND CONDITIONS Index: /branches/rel-1-1/ippScripts/MANIFEST =================================================================== --- /branches/rel-1-1/ippScripts/MANIFEST (revision 12167) +++ /branches/rel-1-1/ippScripts/MANIFEST (revision 12167) @@ -0,0 +1,32 @@ +Build.PL +Changes +LICENSE +MANIFEST +README +scripts/ipp_datapath.pl +scripts/ipp_filename.pl +scripts/mdc2list.pl +scripts/register_imfile.pl +scripts/register_exp.pl +scripts/detrend_process_imfile.pl +scripts/detrend_process_exp.pl +scripts/detrend_stack.pl +scripts/detrend_norm_calc.pl +scripts/detrend_norm_apply.pl +scripts/detrend_norm_exp.pl +scripts/detrend_resid.pl +scripts/detrend_reject_imfile.pl +scripts/detrend_reject_exp.pl +scripts/chip_imfile.pl +scripts/camera_exp.pl +scripts/warp_overlap.pl +scripts/warp_skycell.pl +scripts/diff_skycell.pl +scripts/stack_skycell.pl +scripts/ipp_serial_inject.pl +scripts/ipp_serial_inject_mosaic.pl +scripts/ipp_serial_register.pl +scripts/ipp_serial_detrend.pl +scripts/ipp_serial_chip.pl +scripts/ipp_serial_camera.pl +t/00_distribution.t Index: /branches/rel-1-1/ippScripts/README =================================================================== --- /branches/rel-1-1/ippScripts/README (revision 12167) +++ /branches/rel-1-1/ippScripts/README (revision 12167) @@ -0,0 +1,15 @@ +pod2text foo.pm > README + +If this is still here it means the programmer was too lazy to create the readme file. + +You can create it now by using the command shown above from this directory. + +At the very least you should be able to use this set of instructions +to install the module... + +perl Build.PL +./Build +./Build test +./Build install + +If you are on a windows box you should use 'nmake' rather than 'make'. Index: /branches/rel-1-1/ippScripts/scripts/camera_exp.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/camera_exp.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/camera_exp.pl (revision 12167) @@ -0,0 +1,275 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($exp_tag, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'exp_tag|e=s' => \$exp_tag, + 'camera|c=s' => \$camera, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --exp_tag --camera", + -exitval => 3, +) unless defined $exp_tag + and defined $camera; + +$ipprc->define_camera($camera); + +use constant RECIPE1 => 'PPIMAGE_J1'; # Recipe to use for ppImage to make JPEGs +use constant RECIPE2 => 'PPIMAGE_J2'; # Recipe to use for ppImage to make JPEGs + + +# Look for programs we need +my $missing_tools; +my $camtool = can_run('camtool') or (warn "Can't find camtool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); + +# test for addstar and psastro: +my $psastro = can_run('psastro') or (warn "Can't find psastro" and $missing_tools = 1); +my $addstar = can_run('addstar') or (warn "Can't find addstar" and $missing_tools = 1); + +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of component files +my $files; # Array of component files +{ + my $command = "$camtool -pendingimfile -exp_tag $exp_tag"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform camtool: $error_code", $exp_tag, $error_code); + } + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $exp_tag, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $exp_tag, $PS_EXIT_PROG_ERROR); +} + +# Gather the statistics +my ($bg, $bg_stdev, $bg_mean_stdev); # The statistics triplet +{ + my @backgrounds; # Array of backgrounds in each component + my @variances; # Array of variances for each component +# my @ra; # Array of ra errors +# my @dec; # Array of dec errors +# my @zp; # Array of photometric zero points + foreach my $file (@$files) { + &my_die("Unable to find class id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{class_id}; + my $class_id = $file->{class_id}; + &my_die("Unable to find bg for class_id=$class_id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{bg}; + &my_die("Unable to find bg_mean_stdev for class_id=$class_id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{bg_mean_stdev}; +# &my_die("Unable to find sigma_ra for class_id=$class_id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{sigma_ra}; +# &my_die("Unable to find sigma_dec for class_id=$class_id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{sigma_dec}; +# &my_die("Unable to find zp for class_id=$class_id", $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{zp}; + push @backgrounds, $file->{bg}; + push @variances, $file->{bg_stdev}**2; + } + + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@backgrounds); + $bg = ($stats->mean() or 'NAN'); + $bg_mean_stdev = ($stats->standard_deviation() or 'NAN'); + } + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@variances); + $bg_stdev = (sqrt( $stats->mean() ) or 'NAN'); + } +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = ${$files}[0]->{path_base}; # Example original root name + my ($vol, $dir, $file) = File::Spec->splitpath( $ipprc->convert_filename_absolute( $example ) ); + $workdir = $dir; +} +system "mkdir -p $workdir" unless -d $workdir; + +# make this a function which generates a specific list file for a specific filename + +# Generate the file list, and get the statistics +my $outputFile = "$exp_tag.cam"; +my $outputRoot = File::Spec->catfile( $workdir, $outputFile ); + +my $list1Name = $outputRoot . '.b1.list'; # Name for the input file list for binning 1 +my $list2Name = $outputRoot . '.b2.list'; # Name for the input file list for binning 2 +my $list3Name = $outputRoot . '.b3.list'; # Name for the input file list for chip astrometry + +my @means; # Array of means +my @stdevs; # Array of stdevs +open my $list1File, '>' . $list1Name; +open my $list2File, '>' . $list2Name; +open my $list3File, '>' . $list3Name; + +print "$list1Name $list2Name $list3Name\n"; + +my $chipObjects; +foreach my $file (@$files) { + # use the path_base as OUTPUT root and convert the filenames with ipprc->filename: + my $class_id = $file->{class_id}; + my $origRoot = $ipprc->convert_filename_absolute( $file->{path_base} ); # Original root name + + # if there is only one chip, we use this name for the input to addstar + $chipObjects = $ipprc->filename("PSASTRO.OUTPUT", $origRoot, $class_id); + print $list1File $ipprc->filename("PPIMAGE.BIN1", $origRoot, $class_id); + print $list2File $ipprc->filename("PPIMAGE.BIN2", $origRoot, $class_id); + print $list3File $chipObjects; + push @means, $file->{bg}; + push @stdevs, $file->{bg_stdev}; +} +close $list1File; +close $list2File; +close $list3File; + +# Output products --- need to synch with the camera configuration! +my $jpeg1 = $ipprc->filename("PPIMAGE.JPEG1", $outputRoot); # Binned JPEG #1 +my $jpeg2 = $ipprc->filename("PPIMAGE.JPEG2", $outputRoot); # Binned JPEG #2 +my $fpaObjects = $ipprc->filename("PSASTRO.OUTPUT", $outputRoot); # MEF psastro output + +unless ($no_op) { + + # run psastro +mosastro on the set of chips + # XXX note that this is wrong if imfiles are cells + if (@$files > 1) { + my $command = "$psastro -list $list3Name $outputRoot +mosastro -chipastro"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform psastro: $error_code", $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $fpaObjects", $exp_tag, $PS_EXIT_PROG_ERROR) unless -f $fpaObjects; + } else { + $fpaObjects = $chipObjects; + } + + # run addstar on either the single chip output or the single fpa output + # XXX this construct requires the user to have a valid .ptolemyrc + # XXX which in turn points at ippconfig/dvo.site + { + my $command = "addstar -D CAMERA $camera $fpaObjects"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform addstar: $error_code", $exp_tag, $error_code); + } + } + + # Make the jpeg for binning 1 + { + my $command = "$ppImage -list $list1Name $outputRoot -recipe PPIMAGE " . RECIPE1; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg1", $exp_tag, $PS_EXIT_PROG_ERROR) unless -f $jpeg1; + } + + # Make the jpeg for binning 2 + { + my $command = "$ppImage -list $list2Name $outputRoot -recipe PPIMAGE " . RECIPE2; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg2", $exp_tag, $PS_EXIT_PROG_ERROR) unless -f $jpeg2; + } +} + +# XXX keep the same outroot as the input +# Add the result into the database +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +unless ($no_update) { + my $command = "$camtool -addprocessedexp -exp_tag $exp_tag -uri UNKNOWN " . + "-recip " . RECIPE1() . "," . RECIPE2() . " -path_base $outputRoot " . + "-bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev " . + "-sigma_ra 0.0 -sigma_dec 0.0 -nastro 0 -zp_mean 0.0 -zp_stdev 0.0"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addprocessedexp: $error_code\n"); + exit($error_code); + } + + unlink $list1Name; + unlink $list2Name; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $exp_tag = shift; # Exposure tag + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($exp_tag and not $no_update) { + my $command = "$camtool -addprocessedexp -exp_tag $exp_tag -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/chip_imfile.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/chip_imfile.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/chip_imfile.pl (revision 12167) @@ -0,0 +1,186 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use Data::Dumper; +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +use constant RECIPE => 'PPIMAGE_OBDSFRA'; # Recipe to use + +# Parse the command-line arguments +my ($exp_tag, # Exposure tag + $class_id, # Class Id + $input, # Input FITS file + $camera, # Camera + $dbname, # Database name + $workdir, # Working directory, for output files + $no_update, # Don't update the database? + $no_op, # Don't do any operations? + ); +GetOptions( + 'exp_tag|e=s' => \$exp_tag, + 'class_id|i=s' => \$class_id, + 'uri|u=s' => \$input, + 'camera|c=s' => \$camera, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --exp_tag --class_id --uri --camera", + -exitval => 3, +) unless defined $exp_tag + and defined $class_id + and defined $input + and defined $camera; + +$ipprc->define_camera($camera); + +# Look for programs we need +my $missing_tools; +my $chiptool = can_run('chiptool') or (warn "Can't find chiptool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} +$ppImage .= " -dbname $dbname" if defined $dbname; + +$input = $ipprc->convert_filename_absolute( $input ); + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $input ); + $workdir = $dir; +} + +$workdir = File::Spec->catfile( $workdir, $exp_tag ); +system "mkdir -p $workdir" unless -d $workdir; + +### Output file name --- must match camera configuration! +my $outputFile = "$exp_tag.chip"; +my $outputRoot = File::Spec->catfile( $workdir, $outputFile ); +my $outputImage = $ipprc->filename("PPIMAGE.OUTPUT", $outputRoot, $class_id); +my $outputBin1 = $ipprc->filename("PPIMAGE.BIN1", $outputRoot, $class_id); +my $outputBin2 = $ipprc->filename("PPIMAGE.BIN2", $outputRoot, $class_id); +my $outputStats = $outputRoot . '.' . $class_id . '.stats'; + +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + # Run ppImage + print "outputImage: $outputImage\n"; + print "outputBin1: $outputBin1\n"; + print "outputStats: $outputStats\n"; + + my $command = "$ppImage -file $input $outputRoot -recipe PPIMAGE " . RECIPE . + " -stat $outputStats"; # Command to run ppImage + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $exp_tag, $class_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputImage\n", $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputImage; + &my_die("Couldn't find expected output file: $outputBin1\n", $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin1; + &my_die("Couldn't find expected output file: $outputBin2\n", $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin2; + &my_die("Couldn't find expected output file: $outputStats\n", $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + + # Get the statistics on the processed image + my $statsFile; # File handle + open $statsFile, $outputStats or &my_die("Can't open statistics file $outputStats: $!", $exp_tag, $class_id, $PS_EXIT_SYS_ERROR); + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @contents) or + &my_die("Unable to parse metadata config doc", $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or + &my_die("Unable to find all values in statistics output.\n", $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); +} + +# Add the processed file to the database +$outputImage = $ipprc->convert_filename_relative( $outputImage); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); +my $bg_mean_stdev = ($stats->bg_mean_stdev() or 'NAN'); + +unless ($no_update) { + # Command to run chiptool + my $command = "$chiptool -addprocessedimfile"; + $command .= " -exp_tag $exp_tag"; + $command .= " -class_id $class_id"; + $command .= " -recip " . RECIPE; + $command .= " -uri $outputImage"; + $command .= " -path_base $outputRoot"; + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform chiptool -addprocessedimfile: $error_code\n"); + exit($error_code); + } + + unlink $outputStats; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $exp_tag = shift; # Exposure tag + my $class_id = shift; # Class identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($exp_tag and $class_id and not $no_update) { + my $command = "$chiptool -addprocessedimfile"; + $command .= " -exp_tag $exp_tag"; + $command .= " -class_id $class_id"; + $command .= " -code $exit_code"; + $command .= " -uri $outputImage"; + $command .= " -recip " . RECIPE; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_norm_apply.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_norm_apply.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_norm_apply.pl (revision 12167) @@ -0,0 +1,180 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use PS::IPP::Metadata::Stats; +use IPC::Cmd qw( can_run run ); +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +# Parse the command-line +my ($det_id, # Detrend ID + $iter, # Iteration + $class_id, # Class ID + $value, # Value to multiple (for normalisation) + $input, # Input file + $camera, # Camera + $det_type, # Detrend type + $dbname, # Database name + $workdir, # Working directory, for output files + $no_update, # Don't update the database + $no_op, # Don't do any operations + ); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration|n=s' => \$iter, + 'class_id|i=s' => \$class_id, + 'value|v=s' => \$value, + 'input_uri|u=s' => \$input, + 'camera|c=s' => \$camera, + 'det_type|t=s' => \$det_type, + 'dbname|d=s' => \$dbname, + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, + ) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( -msg => "Required options: --det_id --iteration --class_id --value --input_uri --camera --det_type", + -exitval => 3, + ) unless defined $det_id + and defined $iter + and defined $class_id + and defined $value + and defined $input + and defined $camera + and defined $det_type; + +$ipprc->define_camera($camera); + + +use constant RECIPE => 'PPIMAGE_N'; # Recipe to use with ppImage + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); + +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $input ); + $workdir = $dir; +} +$input = $ipprc->convert_filename_absolute( $input ); + +# Output name +my $outputFile = "$camera.$det_type.norm.$det_id.$iter"; # Root name +my $outputSubD = "$camera.$det_type.$det_id"; +my $outputRoot = File::Spec->catfile( $workdir, $outputSubD, $outputFile ); + +my $output = $ipprc->filename("PPIMAGE.OUTPUT", $outputRoot, $class_id); +my $b1name = $ipprc->filename("PPIMAGE.BIN1", $outputRoot, $class_id); +my $b2name = $ipprc->filename("PPIMAGE.BIN2", $outputRoot, $class_id); + +my $statsName = $outputRoot . '.' . $class_id . '.stats'; # Statistics file + +# Run normalisation +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$ppImage -file $input $outputRoot -norm $value -stat $statsName -recipe PPIMAGE " . RECIPE(); # Command to run + $command .= ' -isfringe' if lc($det_type) eq 'fringe'; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $iter, $class_id, $error_code); + } + &my_die("Can't find expected output file: $output", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -e $output; + &my_die("Can't find expected output file: $b1name", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -e $b1name; + &my_die("Can't find expected output file: $b2name", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -e $b2name; + &my_die("Can't find expected output file: $statsName", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -e $statsName; + + # Get the statistics on the normalised image + my $statsFile; # File handle + open $statsFile, $statsName or &my_die("Can't open statistics file $statsName: $!\n", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR); + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @contents) + or &my_die("Unable to parse metadata config", $det_id, $iter, $class_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $det_id, $iter, $class_id, $PS_EXIT_PROG_ERROR); +} + +# Update the database +$output = $ipprc->convert_filename_relative( $output ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); +my $bg_mean_stdev = ($stats->bg_mean_stdev() or 'NAN'); + +unless ($no_update) { + my $command = "$dettool -addnormalizedimfile -det_id $det_id -iteration $iter -class_id $class_id ". + "-uri $output -path_base $outputRoot"; # Command to run + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addnormalizedimfile: $error_code\n"); + exit($error_code); + } + + unlink $statsName; +} + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $class_id = shift; # Class identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and $class_id and not $no_update) { + my $command = "$dettool -addnormalizedimfile -det_id $det_id -iteration $iter -class_id $class_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_norm_calc.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_norm_calc.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_norm_calc.pl (revision 12167) @@ -0,0 +1,219 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use IPC::Cmd qw( can_run ); +use IPC::Run qw ( run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + + +# Parse command-line arguments +my ($det_id, # Detrend id + $iter, # Iteration + $detType, # Detrend type + $workdir, # Working directory for output files + $dbname, # Database name + $no_update, # Don't update the database? + $no_op, # Don't do operations + ); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration|i=s' => \$iter, + 'det_type|t=s' => \$detType, + 'workdir|w=s' => \$workdir, + 'dbname|d=s' => \$dbname,# Database name + 'no-update' => \$no_update, + 'no-op' => \$no_op, + ) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( -msg => "Required options --det_id --iteration --det_type", + -exitval => 3, + ) unless defined $det_id + and defined $iter + and defined $detType; + + +use constant STATISTIC => 'bg'; # Background statistic to use from the database +# Define which detrend types we normalise +use constant NORMALIZE => { + 'bias' => 0, + 'dark' => 0, + 'shutter' => 0, + 'flat' => 1, + 'domeflat' => 1, + 'skyflat' => 1, + 'fringe' => 0, + }; + + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppNormCalc = can_run('ppNormCalc') or (warn "Can't find ppNormCalc" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +&my_die("Unrecognised detrend type: $detType", $det_id, $iter, $PS_EXIT_PROG_ERROR) unless + exists NORMALIZE()->{lc($detType)}; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get the list of inputs +my @files; # The input files +{ + my $command = "$dettool -processedimfile -det_id $det_id"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my @command = split /\s+/, $command; + my ( $stdin, $stdout, $stderr ); # Buffers for running program + print "Running [$command]...\n"; + if (not run(\@command, \$stdin, \$stdout, \$stderr)) { + &my_die("Unable to perform dettool -processedimfile on detrend $det_id/$iter: $?", + $det_id, $iter, $PS_EXIT_SYS_ERROR); + } +# print $stdout . "\n"; + + # Because of the length, need to split into individual metadatas --- it parses SO much quicker! + my @whole = split /\n/, $stdout; + my @single = (); + while ( scalar @whole > 0 ) { + my $value = shift @whole; + push @single, $value; + if ($value =~ /^\s*END\s*$/) { + push @single, "\n"; + + my $list = parse_md_list( $mdcParser->parse( join( "\n", @single ) ) ); + &my_die("Unable to parse output from dettool", $det_id, $iter, $PS_EXIT_PROG_ERROR) unless + defined $list; + push @files, @$list; + @single = (); + } + } +} + +my $norms; # MDC with normalisations +if (NORMALIZE()->{lc($detType)} and not $no_op) { + + my %matrix; # Matrix of statistics as a function of exposures and classes + foreach my $file (@files) { + my $exp_tag = $file->{'exp_tag'}; # Exposure ID + my $class_id = $file->{'class_id'}; # Class ID + my $stat = $file->{STATISTIC()}; # Statistic of interest + + # Create matrix elements + $matrix{$exp_tag} = {} if not defined $matrix{$exp_tag}; + $matrix{$exp_tag}->{$class_id} = $stat; + } + + # Generate the input for ppNormCalc + my $normData; # Normalisation data + foreach my $exp_tag (keys %matrix) { + $normData .= "$exp_tag\tMETADATA\n"; + foreach my $class_id (keys %{$matrix{$exp_tag}}) { + $normData .= "\t" . $class_id . "\tF32\t" . $matrix{$exp_tag}->{$class_id} . "\n"; + } + $normData .= "END\n\n"; + } + + # Run ppNormCalc + { + my ( $stdout, $stderr ); # Buffers for running program + my @command = split /\s+/, $ppNormCalc; + print "Running [$ppNormCalc]...\n"; + if (not run(\@command, \$normData, \$stdout, \$stderr)) { + &my_die("Unable to perform ppNormCalc: $?", $det_id, $iter, $PS_EXIT_SYS_ERROR); + } + print $stdout . "\n"; + + # Parse the output + $norms = $mdcParser->parse($stdout); + &my_die("Unable to parse metadata config doc", $det_id, $iter, $PS_EXIT_PROG_ERROR) unless $norms; + } + +} else { + # It's something that doesn't need normalisation --- just push in a normalisation of 1 + my %classes; # List of unique classes + foreach my $file (@files) { + my $class_id = $file->{'class_id'}; # Class Id + $classes{$class_id} = 1; + } + + foreach my $class_id (keys %classes) { + my %mdValue; # Metadata value for this class id + $mdValue{name} = $class_id; + $mdValue{value} = 1.0; + push @$norms, \%mdValue; + } +} + + +# Process output normalisations +unless ($no_update) { + foreach my $normItem (@$norms) { + my $className = $normItem->{name}; # Name of component + my $normalisation = $normItem->{value}; # Normalisation for component + + my $command = "$dettool -addnormalizedstat -det_id $det_id -iteration $iter -class_id $className ". + "-norm $normalisation"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my @command = split /\s+/, $command; + + my ( $stdin, $stdout, $stderr ); # Buffers for running program + print "Running [$command]...\n"; + if (not run \@command, \$stdin, \$stdout, \$stderr) { + warn("Unable to perform dettool -addnormstat for $className: $?"); + exit($PS_EXIT_SYS_ERROR); + } + print $stdout . "\n"; + } +} + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and not $no_update) { + my $command = "$dettool -addnormalizedstat -det_id $det_id -iteration $iter -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_norm_exp.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_norm_exp.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_norm_exp.pl (revision 12167) @@ -0,0 +1,211 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $iter, $det_type, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration|i=s' => \$iter, + 'camera|c=s' => \$camera, + 'det_type|t=s' => \$det_type, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --iteration --camera --det_type", + -exitval => 3, +) unless defined $det_id + and defined $iter + and defined $camera + and defined $det_type; + +$ipprc->define_camera($camera); + +use constant RECIPE1 => 'PPIMAGE_J1'; # Recipe to use for ppImage to make JPEGs +use constant RECIPE2 => 'PPIMAGE_J2'; # Recipe to use for ppImage to make JPEGs + + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of component files +my $files; # Array of component files +{ + my $command = "$dettool -normalizedimfile -det_id $det_id -iteration $iter"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $iter, $error_code); + } + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $det_id, $iter, $PS_EXIT_PROG_ERROR); +} + +# Gather the statistics +my ($bg, $bg_stdev, $bg_mean_stdev); # The statistics triplet +{ + my @backgrounds; # Array of backgrounds in each component + my @variances; # Array of variances for each component + foreach my $file (@$files) { + &my_die("Unable to find class id", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $file->{class_id}; + my $class_id = $file->{class_id}; + &my_die("Unable to find bg for class_id=$class_id", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $file->{bg}; + &my_die("Unable to find bg_mean_stdev for class_id=$class_id", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $file->{bg_mean_stdev}; + push @backgrounds, $file->{bg}; + push @variances, $file->{bg_stdev}**2; + } + + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@backgrounds); + $bg = ($stats->mean() or 'NAN'); + $bg_mean_stdev = ($stats->standard_deviation() or 'NAN'); + } + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@variances); + $bg_stdev = (sqrt( $stats->mean() ) or 'NAN'); + } +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = ${$files}[0]->{path_base}; # Example file, for path + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} + +# Generate the file list, and get the statistics +my $outputFile = "$camera.$det_type.norm.$det_id.$iter"; # Root output name +my $outputSubD = "$camera.$det_type.$det_id"; +my $outputRoot = File::Spec->catfile( $workdir, $outputSubD, $outputFile ); + +my $list1Name = $outputRoot . '.b1.list'; # Name for the input file list for binning 1 +my $list2Name = $outputRoot . '.b2.list'; # Name for the input file list for binning 2 +my @means; # Array of means +my @stdevs; # Array of stdevs +open my $list1File, '>' . $list1Name; +open my $list2File, '>' . $list2Name; +foreach my $file (@$files) { + my $origRoot = $ipprc->convert_filename_absolute( $file->{path_base} ); # Original root name + print $list1File ( $ipprc->filename( "PPIMAGE.BIN1", $origRoot, $file->{class_id} ) . "\n"); + print $list2File ( $ipprc->filename( "PPIMAGE.BIN2", $origRoot, $file->{class_id} ) . "\n"); + push @means, $file->{bg}; + push @stdevs, $file->{bg_stdev}; +} +close $list1File; +close $list2File; + +# Output products +my $jpeg1Name = $ipprc->filename("PPIMAGE.JPEG1", $outputRoot); # Binned JPEG #1 +my $jpeg2Name = $ipprc->filename("PPIMAGE.JPEG2", $outputRoot); # Binned JPEG #2 + +unless ($no_op) { + # Make the jpeg for binning 1 + { + my $command = "$ppImage -list $list1Name $outputRoot -recipe PPIMAGE " . RECIPE1; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + &my_die("Unable to find expected output file: $jpeg1Name", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless -f $jpeg1Name; + } + + # Make the jpeg for binning 2 + { + my $command = "$ppImage -list $list2Name $outputRoot -recipe PPIMAGE " . RECIPE2; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + &my_die("Unable to find expected output file: $jpeg2Name", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless -f $jpeg2Name; + } +} + +# Add the result into the database +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +unless ($no_update) { + my $command = "$dettool -addnormalizedexp -det_id $det_id -iteration $iter " . + "-recip " . RECIPE1() . "," . RECIPE2() . " -path_base $outputRoot " . + "-bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform dettool -addnormalizedexp: $error_code", $det_id, $iter, $error_code); + } + + unlink $list1Name; + unlink $list2Name; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and not $no_update) { + my $command = "$dettool -addprocessedimfile -det_id $det_id -iter $iter -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_process_exp.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_process_exp.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_process_exp.pl (revision 12167) @@ -0,0 +1,216 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $exp_tag, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'exp_tag|e=s' => \$exp_tag, + 'camera|c=s' => \$camera, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --exp_tag --camera", + -exitval => 3, +) unless defined $det_id + and defined $exp_tag, + and defined $camera; + +$ipprc->define_camera($camera); + +use constant RECIPE1 => 'PPIMAGE_J1'; # Recipe to use for ppImage to make JPEGs +use constant RECIPE2 => 'PPIMAGE_J2'; # Recipe to use for ppImage to make JPEGs + + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of component files +my $files; # Array of component files +{ + my $command = "$dettool -processedimfile -det_id $det_id -exp_tag $exp_tag"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform dettool -processedimfile: $error_code", $det_id, $exp_tag, $error_code); + } + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $det_id, $exp_tag, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $det_id, $exp_tag, $PS_EXIT_PROG_ERROR); +} + +# Gather the statistics +my ($bg, $bg_stdev, $bg_mean_stdev); # The statistics triplet +{ + my @backgrounds; # Array of backgrounds in each component + my @variances; # Array of variances for each component + foreach my $file (@$files) { + &my_die("Unable to find class id", $det_id, $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{class_id}; + my $class_id = $file->{class_id}; + &my_die("Unable to find bg for class_id=$class_id", $det_id, $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{bg}; + &my_die("Unable to find bg_mean_stdev for class_id=$class_id", $det_id, $exp_tag, $PS_EXIT_SYS_ERROR) unless defined $file->{bg_mean_stdev}; + push @backgrounds, $file->{bg}; + push @variances, $file->{bg_stdev}**2; + } + + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@backgrounds); + $bg = ($stats->mean() or 'NAN'); + $bg_mean_stdev = ($stats->standard_deviation() or 'NAN'); + } + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@variances); + $bg_stdev = (sqrt( $stats->mean() ) or 'NAN'); + } +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = ${$files}[0]->{path_base}; # Example original root name + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} +my $outputFile = $exp_tag . '.detproc.' . $det_id; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $exp_tag, $outputFile ); + +# output files: +my $list1Name = $outputRoot . '.b1.list'; # Name for the input file list for binning 1 +my $list2Name = $outputRoot . '.b2.list'; # Name for the input file list for binning 2 +my @means; # Array of means +my @stdevs; # Array of stdevs +open my $list1File, '>' . $list1Name; +open my $list2File, '>' . $list2Name; +foreach my $file (@$files) { + my $origRoot = $ipprc->convert_filename_absolute( $file->{path_base} ); # Original root name + print $list1File ($ipprc->filename( "PPIMAGE.BIN1", $origRoot, $file->{class_id} ) . "\n"); + print $list2File ($ipprc->filename( "PPIMAGE.BIN2", $origRoot, $file->{class_id} ) . "\n"); + push @means, $file->{bg}; + push @stdevs, $file->{bg_stdev}; +} +close $list1File; +close $list2File; + +# Output products +my $jpeg1 = $ipprc->filename("PPIMAGE.JPEG1", $outputRoot); # Binned JPEG #1 +my $jpeg2 = $ipprc->filename("PPIMAGE.JPEG2", $outputRoot); # Binned JPEG #2 + +unless ($no_op) { + # Make the jpeg for binning 1 + { + my $command = "$ppImage -list $list1Name $outputRoot -recipe PPIMAGE " . RECIPE1; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg1", $det_id, $exp_tag, $PS_EXIT_SYS_ERROR) unless -f $jpeg1; + } + + # Make the jpeg for binning 2 + { + my $command = "$ppImage -list $list2Name $outputRoot -recipe PPIMAGE " . RECIPE2; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg2", $det_id, $exp_tag, $PS_EXIT_SYS_ERROR) unless -f $jpeg2; + } +} + +# Add the result into the database +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +unless ($no_update) { + my $command = "$dettool -addprocessedexp -det_id $det_id -exp_tag $exp_tag " . + "-recip " . RECIPE1() . "," . RECIPE2() . " -path_base $outputRoot " . + "-bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addprocessedexp: $error_code"); + exit($error_code); + } + + unlink $list1Name; + unlink $list2Name; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $exp_tag = shift; # Exposure tag + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $exp_tag and not $no_update) { + my $command = "$dettool -addprocessedexp -det_id $det_id -exp_tag $exp_tag -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_process_imfile.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_process_imfile.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_process_imfile.pl (revision 12167) @@ -0,0 +1,184 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $exp_tag, $class_id, $det_type, $input_uri, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'exp_tag|e=s' => \$exp_tag, + 'class_id|i=s' => \$class_id, + 'det_type|t=s' => \$det_type, + 'input_uri|u=s' => \$input_uri, + 'camera|c=s' => \$camera, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --exp_tag --class_id --det_type --input_uri --camera", + -exitval => 3, +) unless defined $det_id + and defined $exp_tag + and defined $class_id + and defined $det_type + and defined $input_uri + and defined $camera; + +# XXX this exits with status = 0 on failure +$ipprc->define_camera($camera); + +# Recipes to use, as a function of the detrend type +use constant RECIPES => { + 'bias' => 'PPIMAGE_O', # Overscan only + 'dark' => 'PPIMAGE_OB', # Overscan and bias only + 'shutter' => 'PPIMAGE_OBD', # Overscan, bias and dark only + 'flat' => 'PPIMAGE_OBDS', # Overscan, bias, dark and shutter only + 'domeflat' => 'PPIMAGE_OBDS', # Overscan, bias, dark and shutter only + 'skyflat' => 'PPIMAGE_OBDS', # Overscan, bias, dark and shutter only + 'fringe' => 'PPIMAGE_OBDSF',# Overscan, bias, dark, shutter and flat only +}; + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} +$ppImage .= " -dbname $dbname" if defined $dbname; + +# Recipe to use in processing +my $recipe = RECIPES->{lc($det_type)}; +unless (defined $recipe) { + warn("Unrecognised detrend type: $det_type"); + exit($PS_EXIT_CONFIG_ERROR); +} + +### Output file name +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $input_uri ); + $workdir = $dir; +} +my $outputFile = "$exp_tag.detproc.$det_id"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $exp_tag, $outputFile ); +my $outputImage = $ipprc->filename("PPIMAGE.OUTPUT", $outputRoot, $class_id); +my $outputBin1 = $ipprc->filename("PPIMAGE.BIN1", $outputRoot, $class_id); +my $outputBin2 = $ipprc->filename("PPIMAGE.BIN2", $outputRoot, $class_id); + +my $outputStats = $outputRoot . '.' . $class_id . '.stats'; + +$input_uri = $ipprc->convert_filename_absolute( $input_uri ); + +# Run ppImage +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$ppImage -file $input_uri $outputRoot -recipe PPIMAGE $recipe" . + " -stat $outputStats"; # Command to run ppImage + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $exp_tag, $class_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputImage", $det_id, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputImage; + &my_die("Couldn't find expected output file: $outputStats", $det_id, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + &my_die("Couldn't find expected output file: $outputBin1", $det_id, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin1; + &my_die("Couldn't find expected output file: $outputBin2", $det_id, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin2; + + # Get the statistics on the processed image + my $statsFile; # File handle + open $statsFile, "$outputStats" or die "Can't open statistics file $outputStats: $!\n"; + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @contents) + or &my_die("Unable to parse metadata config", $det_id, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $det_id, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); +} + +# Take off the absolute path, to stuff into the database +$outputImage = $ipprc->convert_filename_relative( $outputImage ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); +my $bg_mean_stdev = ($stats->bg_mean_stdev() or 'NAN'); + +# Add the processed file to the database +unless ($no_update) { + my $command = "$dettool -addprocessedimfile -det_id $det_id -exp_tag $exp_tag " . + "-class_id $class_id -recip $recipe -uri $outputImage -path_base $outputRoot"; # Command to run dettool + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addprocessedimfile: $error_code\n"); + exit($error_code); + } + + unlink $outputStats; +} + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $exp_tag = shift; # Exposure tag + my $class_id = shift; # Class identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $exp_tag and $class_id and not $no_update) { + my $command = "$dettool -addprocessedimfile -det_id $det_id -exp_tag $exp_tag -class_id $class_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_reject_exp.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_reject_exp.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_reject_exp.pl (revision 12167) @@ -0,0 +1,323 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $iter, $det_type, $camera, $filter, $workdir, $dbname, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration=s' => \$iter, + 'det_type|t=s' => \$det_type, + 'camera=s' => \$camera, + 'filter=s' => \$filter, + 'workdir|w=s' => \$workdir, # Working directory for output files + 'dbname|d=s' => \$dbname, # Database name + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --iteration --det_type --camera", + -exitval => 3, +) unless defined $det_id + and defined $iter + and defined $det_type + and defined $camera; + + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of component files +my $exposures; # Array of exposures +{ + my $command = "$dettool -residexp -det_id $det_id -iteration $iter"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform dettool -residexp: $error_code", $det_id, $iter, $error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $PS_EXIT_PROG_ERROR); + # XXX need to test that the result list is 0 length and return with a different error + $exposures = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $det_id, $iter, $PS_EXIT_PROG_ERROR); +} + +my @expTags; # Array of exposure IDs +my @means; # Array of means +my @stdevs; # Array of standard deviations +my @meanStdevs; # Array of standard deviations of the mean (normalised by the mean) +my @variances; # Array of variances +my @accept; # Array of accept flags +my @include; # Array of include flags +foreach my $exposure (@$exposures) { + &my_die("Unable to find exposure id.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{exp_tag}; + &my_die("Unable to find mean.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{bg}; + &my_die("Unable to find stdev.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{bg_stdev}; + &my_die("Unable to find mean stdev.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{bg_mean_stdev}; + &my_die("Unable to find accept.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{accept}; + &my_die("Unable to find include.\n", $det_id, $iter, $PS_EXIT_SYS_ERROR) unless defined $exposure->{include}; + push @expTags, $exposure->{exp_tag}; + push @means, $exposure->{bg}; + push @stdevs, $exposure->{bg_stdev}; + # XXX why are we using mean_stdev / bd? + # push @meanStdevs, $exposure->{bg_mean_stdev} / $exposure->{bg}; + push @meanStdevs, $exposure->{bg_mean_stdev}; + push @variances, $exposure->{bg_stdev}**2; + push @accept, $exposure->{accept}; + push @include, $exposure->{include}; +} +my $meanStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator +$meanStats->add_data(@means); +my $stdevStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator +$stdevStats->add_data(@stdevs); +my $meanStdevStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator +$meanStdevStats->add_data(@meanStdevs); + +$ipprc->define_camera($camera); +# Rejection thresholds +my $reject_mean = rejection_limit( 'ENSEMBLE.MEAN', $det_type, $filter ); +my $reject_stdev = rejection_limit( 'ENSEMBLE.STDEV', $det_type, $filter ); +my $reject_meanstdev = rejection_limit( 'ENSEMBLE.MEANSTDEV', $det_type, $filter ); + +print "Ensemble mean " . $meanStats->mean() . " +/- " . $meanStats->standard_deviation . + ", stdev " . $stdevStats->mean() . " +/- " . $stdevStats->standard_deviation() . "\n\n"; + +# Go through again to do rejection, and update the database for each exposure +my $numChanges = 0; # Number of exposures with changed status +my $numReject = 0; # Number of exposures rejected +my $command; +my $reject; +my $expTag; +for (my $i = 0; $i < scalar @means; $i++) { + $expTag = $expTags[$i]; # Exposure ID + $command = "$dettool -updateresidexp -det_id $det_id -iteration $iter -exp_tag $expTag"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + + $reject = 0; # Reject this exposure? + + if (not $accept[$i]) { + # Rejected this at an earlier stage + print "Rejecting $expTag based on earlier determination.\n"; + $reject = 1; + goto UPDATE; + } + + # Cop-out if we're not doing any operations + if ($no_op) { + # Make sure something gets rejected (just once!), just so that + # we can trace the full range of the workflow + if ($i == 0 and $iter == 0) { + $reject = 1; + } + goto UPDATE; + } + + if ($reject_mean and defined $meanStats->standard_deviation() ) { + my $dMean = abs($means[$i] - $meanStats->mean()) ; + if ($dMean > ($reject_mean * $meanStats->standard_deviation())) { + print "Rejecting $expTag based on outlier mean value: " . + "$means[$i] --> $dMean vs " . $reject_mean * $meanStats->standard_deviation() . "\n"; + $reject = 1; + goto UPDATE; + } + } else { + print "no rejection for exposure mean\n"; + } + + if ($reject_stdev and defined $stdevStats->standard_deviation() > 0) { + my $dMean = abs($stdevs[$i] - $stdevStats->mean()); + if ($dMean > ($reject_stdev * $stdevStats->standard_deviation())) { + print "Rejecting $expTag based on outlier stdev: " . + $stdevs[$i] . " --> $dMean sigma vs " . $reject_stdev . "\n"; + $reject = 1; + goto UPDATE; + } + } else { + print "no rejection for exposure stdev\n"; + } + + if ($reject_meanstdev and defined $meanStdevStats->standard_deviation() > 0) { + my $dMean = abs($meanStdevs[$i] - $meanStdevStats->mean()); + if ($dMean > ($reject_meanstdev * $meanStdevStats->standard_deviation())) { + print "Rejecting $expTag based on outlier mean stdev: " . + $meanStdevs[$i] . " --> $dMean sigma vs " . $reject_meanstdev . "\n"; + $reject = 1; + goto UPDATE; + } + } else { + print "no rejection for exposure mean stdev\n"; + } + + UPDATE: + if ($reject) { + $command .= ' -reject'; + $numReject++; + } + + # Check for status changes + if ((not $include[$i] and not $reject) or ($include[$i] and $reject)) { + print "Status of $expTag has changed.\n"; + $numChanges++; + } + + unless ($no_update) { + # Update + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform dettool -updateresidexp: $error_code", $det_id, $iter, $error_code); + } + } +} + +# Decide if the current is sufficient to use as a master, and if we can stop iterating +my $master = 1; # This is good enough for a master +my $stop = 1; # Stop iterating + +if ($numChanges > 0) { + $master = 0; + $stop = 0; +} + +# Rejecting everything --- stop before something bad happens! +if ($numReject == scalar @means) { + $master = 0; + $stop = 1; +} + +print "Master: $master\n"; +print "Stop: $stop\n"; + +# Put results into the database +unless ($no_update) { + + { + # Add the summary + my $varianceStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator + $varianceStats->add_data(@variances); + + my $bg = ($meanStats->mean() or 'NAN'); + my $bg_stdev = (sqrt( $varianceStats->mean() ) or 'NAN'); + my $bg_mean_stdev = ($meanStats->standard_deviation() or 'NAN'); + + my $command = "$dettool -adddetrunsummary -det_id $det_id -iteration $iter"; + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -accept" if $master; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -adddetrunsummary: $error_code"); + exit($error_code); + } + } + + # Re-run processing if required + { + my $command = "$dettool -updatedetrun -det_id $det_id"; + if ($stop) { + $command .= ' -state stop'; + } else { + $command .= ' -again'; + } + + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -updatedetrun: $error_code"); + exit($error_code); + } + } +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and not $no_update) { + my $command = "$dettool -adddetrunsummary -det_id $det_id -iteration $iter -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + + + +# Retrieve the requested rejection limit, dying unless extant +sub rejection_limit +{ + my $name = shift; # Rejection limit to + my $type = shift; # Type of exposure + my $filter = shift; # Filter + + my $value = $ipprc->rejection( $name, $det_type, $filter ); + if (not defined $value) { + $filter = "(no filter)" unless defined $filter; + die "Unable to determine $name rejection limit for $det_type with $filter.\n"; + } + + return $value; +} + + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_reject_imfile.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_reject_imfile.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_reject_imfile.pl (revision 12167) @@ -0,0 +1,387 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $iter, $exp_tag, $det_type, $camera, $filter, $reject, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration=s' => \$iter, + 'exp_tag|e=s' => \$exp_tag, + 'det_type|t=s' => \$det_type, + 'camera=s' => \$camera, + 'filter=s' => \$filter, + 'reject' => \$reject, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, + ) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --iteration --exp_tag --det_type --camera", + -exitval => 3, + ) unless defined $det_id + and defined $iter + and defined $exp_tag + and defined $det_type + and defined $camera; + +$ipprc->define_camera($camera); + +use constant RECIPE1 => 'PPIMAGE_J1'; # Recipe to use for ppImage to make JPEGs +use constant RECIPE2 => 'PPIMAGE_J2'; # Recipe to use for ppImage to make JPEGs + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of imfile files +my $files; # Array of imfile files +{ + my $command = "$dettool -residimfile -det_id $det_id -iteration $iter -exp_tag $exp_tag"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -residimfile: $error_code\n"); + exit($error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $exp_tag, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $det_id, $iter, $exp_tag, $PS_EXIT_PROG_ERROR); +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = ${$files}[0]->{path_base}; # Example original root name + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} + +# Generate the file list, and get the statistics +my $outputFile = "$exp_tag.detresid.$det_id.$iter"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $exp_tag, $outputFile ); + +my $list1Name = $outputRoot . '.b1.list'; # Name for the input file list for binning 1 +my $list2Name = $outputRoot . '.b2.list'; # Name for the input file list for binning 2 + +my @means; # Array of means +my @variances; # Array of variances +my @meanStdevs; # Array of mean stdevs +open my $list1File, '>' . $list1Name; +open my $list2File, '>' . $list2Name; +foreach my $file (@$files) { + my $origRoot = $ipprc->convert_filename_absolute( $file->{path_base} ); # Original root name + print $list1File ($ipprc->filename( "PPIMAGE.BIN1", $origRoot, $file->{class_id} ) . "\n"); + print $list2File ($ipprc->filename( "PPIMAGE.BIN2", $origRoot, $file->{class_id} ) . "\n"); + push @means, $file->{bg}; + push @meanStdevs, $file->{bg_mean_stdev}; + ## calculate the root-mean-square of the bd_stdevs + push @variances, $file->{bg_stdev}*$file->{bg_stdev}; + +} +close $list1File; +close $list2File; + +# Output products --- need to synch with the camera configuration! +my $jpeg1Name = $ipprc->filename("PPIMAGE.JPEG1", $outputRoot); # Binned JPEG #1 +my $jpeg2Name = $ipprc->filename("PPIMAGE.JPEG2", $outputRoot); # Binned JPEG #2 + +unless ($no_op) { + + # Make the jpeg for binning 1 + { + my $command = "$ppImage -list $list1Name $outputRoot -recipe PPIMAGE " . RECIPE1; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to run ppImage: $error_code", $det_id, $iter, $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg1Name", $det_id, $iter, $exp_tag, $PS_EXIT_SYS_ERROR) unless -f $jpeg1Name; + } + + # Make the jpeg for binning 2 + { + my $command = "$ppImage -list $list2Name $outputRoot -recipe PPIMAGE " . RECIPE2; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to run ppImage: $error_code", $det_id, $iter, $exp_tag, $error_code); + } + &my_die("Unable to find expected output file: $jpeg2Name", $det_id, $iter, $exp_tag, $PS_EXIT_SYS_ERROR) unless -f $jpeg2Name; + } +} + +my $expected = rejection_limit( 'EXPECTED', $det_type, $filter ); # Expected mean +# Rejection thresholds +my $reject_imfile_mean = rejection_limit( 'IMFILE.MEAN', $det_type, $filter ); +my $reject_imfile_stdev = rejection_limit( 'IMFILE.STDEV', $det_type, $filter ); +my $reject_imfile_meanstdev = rejection_limit( 'IMFILE.MEANSTDEV', $det_type, $filter ); +my $reject_imfile_sn = rejection_limit( 'IMFILE.SN', $det_type, $filter ); +my $reject_exp_mean = rejection_limit( 'EXP.MEAN', $det_type, $filter ); +my $reject_exp_stdev = rejection_limit( 'EXP.STDEV', $det_type, $filter ); +my $reject_exp_meanstdev = rejection_limit( 'EXP.MEANSTDEV', $det_type, $filter ); +my $reject_exp_sn = rejection_limit( 'EXP.SN', $det_type, $filter ); + +# Reject based on the stats of the imfiles +# it is VALID to reject on more than one criterion +&my_die("Number of means and number of variances differ!", $det_id, $iter, $exp_tag, $PS_EXIT_PROG_ERROR) unless scalar @means == scalar @variances; +for (my $i = 0; $i < scalar @means; $i++) { + my $mean = $means[$i]; # Mean for this imfile + $mean -= $expected; + my $stdev = sqrt($variances[$i]); # Stdev for this imfile + + last if $no_op; + + if ($reject_imfile_mean) { + if (abs($mean) > $reject_imfile_mean * $stdev) { + print "Rejecting exposure based on bad imfile mean for imfile $i: " . + $mean . " vs " . $reject_imfile_mean . "\n"; + $reject = 1; + last; + } + } else { + print "no rejection for imfile mean\n"; + } + if ($reject_imfile_stdev) { + if ($stdev > $reject_imfile_stdev) { + print "Rejecting exposure based on bad imfile stdev for imfile $i: " . + $stdev . " vs " . $reject_imfile_stdev . "\n"; + $reject = 1; + last; + } + } else { + print "no rejection for imfile stdev\n"; + } + if ($reject_imfile_meanstdev) { + if ($meanStdevs[$i] > $reject_imfile_meanstdev) { + print "Rejecting exposure based on bad imfile mean stdev for imfile $i: " . + $meanStdevs[$i] . " vs " . $reject_imfile_meanstdev . "\n"; + $reject = 1; + last; + } + } else { + print "no rejection for imfile mean stdev\n"; + } + if ($reject_imfile_sn) { + if ($mean < $stdev * $reject_imfile_sn) { + print "Rejecting exposure based on bad imfile S/N for imfile $i: \n"; + print "mean: " . $mean . " vs " . "stdev*SNlimit: " . $stdev * $reject_imfile_sn . "\n"; + $reject = 1; + last; + } + } else { + print "no rejection for imfile S/N\n"; + } +} + +# calculate the exposure ensemble statistics +my $meanStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator for means +$meanStats->add_data(@means); +my $varianceStats = Statistics::Descriptive::Sparse->new(); # Statistics calculator for variances +$varianceStats->add_data(@variances); + +my $mean = $meanStats->mean(); # Mean of the imfile means +my $meanStdev = $meanStats->standard_deviation(); # Stdev of the imfile means +if (not defined $meanStdev) { + # this is the case for Nimfile == 1 + $meanStdev = 0; +} +my $stdev = sqrt($varianceStats->mean()); # Root-Mean-Square of the imfile stdevs (root mean of variances) +my $exp_sn = 0.0; +if ($stdev > 0) { $exp_sn = $mean / $stdev; } + +print "exposure mean $mean, stdev $stdev, mean stdev $meanStdev, exp s/n: $exp_sn\n"; + +## Reject based on the exposure ensemble stats +# reject if the exposure ensemble mean is deviant +unless ($no_op) { + if ($reject_exp_mean) { + if (abs($mean) > $reject_exp_mean * $stdev) { + print "Rejecting exposure based on bad mean: \n"; + print "mean: $mean, stdev: $stdev (limit is: % $reject_exp_mean\n"; + $reject = 1; + } + } else { + print "no rejection for exp mean\n"; + } + # reject if the exposure ensemble stdev is deviant + if ($reject_exp_stdev) { + if ($stdev > $reject_exp_stdev) { + print "Rejecting exposure based on bad mean stdev: " . $stdev . " vs " . + $reject_exp_stdev . "\n"; + $reject = 1; + } + } else { + print "no rejection for exp stdev\n"; + } + # reject if the exposure ensemble mean stdev is deviant + if ($reject_exp_meanstdev) { + if ($meanStdev > $reject_exp_meanstdev) { + print "Rejecting exposure based on bad mean stdev: " . $meanStdev . " vs " . + $reject_exp_meanstdev . "\n"; + $reject = 1; + } + } else { + print "no rejection for exp mean stdev\n"; + } + # reject if the signal-to-noise is insufficient + if ($reject_exp_sn) { + if (abs($mean) < abs($stdev * $reject_exp_sn)) { + print "Rejecting exposure based on poor S/N: \n"; + print "signal: $mean vs noise: $stdev (s/n limit is: $reject_exp_sn)\n"; + $reject = 1; + } + } else { + print "no rejection for exp S/N\n"; + } +} + +# Add the result into the database +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = $mean; +my $bg_stdev = $stdev; +my $bg_mean_stdev = $meanStdev; + +unless ($no_update) { + my $command = "$dettool -addresidexp -det_id $det_id -iteration $iter -exp_tag $exp_tag " . + "-recip " . RECIPE1() . "," . RECIPE2() . " -path_base $outputRoot "; # Command to run + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= ' -reject' if $reject; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addresidexp: $error_code\n"); + exit($error_code); + } + + unlink $list1Name; + unlink $list2Name; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $exp_tag = shift; # Exposure tag + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and $exp_tag and not $no_update) { + my $command = "$dettool -addresidexp -det_id $det_id -iteration $iter -exp_tag $exp_tag -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + + +# Retrieve the requested rejection limit, dying if not extant +sub rejection_limit +{ + my $name = shift; # Rejection limit to + my $type = shift; # Type of exposure + my $filter = shift; # Filter + + my $value = $ipprc->rejection( $name, $det_type, $filter ); + if (not defined $value) { + $filter = "(no filter)" if not defined $filter; + die "Unable to determine $name rejection limit for $det_type with $filter.\n"; + } + + return $value; +} + + + + +__END__ + +#### + +## this function is not well though out. it loads a collection of +## values (background mean and stdev) for a collection of imfile +## subcomponents. it then measures the mean background, the +## background stdev (rms of ensemble stdevs), and the background mean +## stdev (rms of the means). it then tries to reject based on the +## following criteria: +## (background / stdev > limit) for a single component +## ---> this will ACCEPT for a poor images (large stdev) +## (stdev > limit) +## (mean background / stdev > limit) same problem +## (mean stdev > limit) + +### I would suggest the following: +## 1) calculate the ensemble mean and stdev +## 2) for each component, is the (back - mean) / mean stdev > limit? +## (ie, is it an outlier?) +## 3) is the component stdev > limit? (absolute test) +## 4) calculate the background stdev for the ensemble (excluding rejects) +## 5) is the mean stdev > limit (poor images) +## 6) calculate the ensemble stdev (rms) of remaining (excluding rejects) +## 7) is the ensemble stdev > limit + +## for flats, the value used for stdev should be the fractional stdev +## (stdev/mean) and no rejection should be performed on the basis of +## the mean value, but could still be done on the mean stdev + +## the same logical cuts above can be applied to components in an +## imfile, imfiles in an exposure, and exposures in a stack + +### this function needs to avoid div by zero: compare Signal vs Noise*limit Index: /branches/rel-1-1/ippScripts/scripts/detrend_resid.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_resid.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_resid.pl (revision 12167) @@ -0,0 +1,227 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $iter, $exp_tag, $class_id, $det_type, $detrend, + $input_uri, $camera, $mode, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration=s' => \$iter, + 'exp_tag|e=s' => \$exp_tag, + 'class_id|i=s' => \$class_id, + 'det_type|t=s' => \$det_type, + 'detrend=s' => \$detrend, + 'input_uri|u=s' => \$input_uri, + 'camera|c=s' => \$camera, + 'mode|m=s' => \$mode, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --iteration --exp_tag --class_id --det_type --camera --input_uri --mode --detrend (not for 'verify' mode)", + -exitval => 3, +) unless defined $det_id + and defined $iter + and defined $exp_tag + and defined $class_id + and defined $det_type + and defined $input_uri + and defined $camera + and defined $mode + and (defined $detrend or lc($mode) eq 'verify'); + +$ipprc->define_camera($camera); + +# Recipes to use, as a function of the detrend type +use constant RECIPES => { + 'master' => { # We're creating a master --- already processed the input + 'bias' => 'PPIMAGE_B', # Bias only + 'dark' => 'PPIMAGE_D', # Dark only + 'shutter' => 'PPIMAGE_S', # Shutter only + 'flat' => 'PPIMAGE_F', # Flat-field only + 'domeflat' => 'PPIMAGE_F', # Flat-field only + 'skyflat' => 'PPIMAGE_F', # Flat-field only + 'fringe' => 'PPIMAGE_R', # Fringe only + }, + 'verify' => { # We're checking the master --- input is not already processed + 'bias' => 'PPIMAGE_OB', # Bias only + 'dark' => 'PPIMAGE_OBD', # Dark only + 'shutter' => 'PPIMAGE_OBDS', # Shutter only + 'flat' => 'PPIMAGE_OBDSF', # Flat-field only + 'domeflat' => 'PPIMAGE_OBDSF', # Flat-field only + 'skyflat' => 'PPIMAGE_OBDSF', # Flat-field only + 'fringe' => 'PPIMAGE_OBDSFR', # Fringe only + }, +}; + +# Flags to specify the particular detrend to use +use constant DETRENDS => { + 'bias' => '-bias', # Specify the bias frame + 'dark' => '-dark', # Specify the dark frame + 'shutter' => '-shutter', # Specify the shutter frame + 'flat' => '-flat', # Specify the flat frame + 'domeflat' => '-flat', # Specify the flat frame + 'skyflat' => '-flat', # Specify the flat frame + 'fringe' => '-fringe', # Specify the fringe frame +}; + + +use constant DELETE_STATS => 0; # Delete the statistics file when done? + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppImage = can_run('ppImage') or (warn "Can't find ppImage" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} +$ppImage .= " -dbname $dbname" if defined $dbname; + +# Recipe to use in processing +&my_die("Unrecognised mode: $mode", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR) unless defined RECIPES->{$mode}; +my $recipe = RECIPES->{$mode}->{lc($det_type)}; +&my_die("Unrecognised detrend type: $det_type", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR) unless defined $recipe; + +### Output file names --- must match camera configuration! +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $input_uri ); + $workdir = $dir; +} + +my $outputFile = "$exp_tag.detresid.$det_id.$iter"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $exp_tag, $outputFile ); + +my $outputName = $ipprc->filename("PPIMAGE.OUTPUT", $outputRoot, $class_id); +my $bin1Name = $ipprc->filename("PPIMAGE.BIN1", $outputRoot, $class_id); +my $bin2Name = $ipprc->filename("PPIMAGE.BIN2", $outputRoot, $class_id); + +my $outputStats = $outputRoot . '.' . $class_id . '.stats'; + +$detrend = $ipprc->convert_filename_absolute( $detrend ) if defined $detrend; +$input_uri = $ipprc->convert_filename_absolute( $input_uri ); + +# Run ppImage +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$ppImage -file $input_uri $outputRoot -recipe PPIMAGE $recipe" . + " -stat $outputStats "; # Command to run ppImage + + # Detrend to use in processing + if (lc($mode) ne 'verify') { + my $detFlag = DETRENDS->{lc($det_type)}; + &my_die("Unrecognised detrend type: $det_type", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR) unless defined $detFlag; + $command .= "$detFlag $detrend"; + } + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $det_id, $iter, $exp_tag, $class_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputName", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputName; + &my_die("Couldn't find expected output file: $outputStats", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + &my_die("Couldn't find expected output file: $bin1Name", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $bin1Name; + &my_die("Couldn't find expected output file: $bin2Name", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR) unless -f $bin2Name; + + # Get the statistics on the residual image + my $statsFile; # File handle + open $statsFile, $outputStats or &my_die("Can't open statistics file $outputStats: $!", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_SYS_ERROR); + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @contents) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); + $stats = PS::IPP::Metadata::Stats->new(); # Stats parser + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $det_id, $iter, $exp_tag, $class_id, $PS_EXIT_PROG_ERROR); +} + +# Add the processed file to the database +$outputName = $ipprc->convert_filename_relative( $outputName ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); +my $bg_mean_stdev = ($stats->bg_mean_stdev() or 'NAN'); + +unless ($no_update) { + my $command = "$dettool -addresidimfile -det_id $det_id -iteration $iter -exp_tag $exp_tag " . + "-class_id $class_id -recip $recipe -uri $outputName -path_base $outputRoot"; # Command to run dettool + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addresidimfile: $error_code\n"); + exit($error_code); + } + + unlink $outputStats; +} + + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $exp_tag = shift; # Exposure tag + my $class_id = shift; # Class identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and $exp_tag and not $no_update) { + my $command = "$dettool -addresidimfile -det_id $det_id -iteration $iter -exp_tag $exp_tag -class_id $class_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $exit = $?; + system("sync") == 0 or die "failed to execute sync: $!"; + $? = $exit; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/detrend_stack.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/detrend_stack.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/detrend_stack.pl (revision 12167) @@ -0,0 +1,198 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use PS::IPP::Metadata::Stats; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($det_id, $iter, $class_id, $det_type, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'det_id|d=s' => \$det_id, + 'iteration=s' => \$iter, + 'class_id|i=s' => \$class_id, + 'det_type|t=s' => \$det_type, + 'camera|c=s' => \$camera, + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, + 'no-op' => \$no_op, +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --det_id --iteration --class_id --det_type --camera", + -exitval => 3, +) unless defined $det_id + and defined $iter + and defined $class_id + and defined $det_type + and defined $camera; + +# Recipes to use as a function of detrend type +use constant RECIPES => { + 'bias' => 'PPMERGE_BIAS', + 'dark' => 'PPMERGE_DARK', + 'shutter' => 'PPMERGE_SHUTTER', + 'flat' => 'PPMERGE_FLAT', + 'domeflat' => 'PPMERGE_FLAT', + 'skyflat' => 'PPMERGE_FLAT', + 'fringe' => 'PPMERGE_FRINGE', + }; + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $ppMerge = can_run('ppMerge') or (warn "Can't find ppMerge" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +my $recipe = RECIPES()->{lc($det_type)}; # Recipe to use in stacking +&my_die("Unrecognised detrend type: $det_type", $det_id, $iter, $class_id, $PS_EXIT_PROG_ERROR) unless defined $recipe; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get list of files to stack +my $files; # Array of files to be stacked +{ + my $command = "$dettool -processedimfile -det_id $det_id -class_id $class_id -included"; # Command to run + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform dettool -processedimfile: $error_code", $det_id, $iter, $class_id, $error_code); + } + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $class_id, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $det_id, $iter, $class_id, $PS_EXIT_PROG_ERROR); +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = ${$files}[0]->{uri}; # Example file + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} + +# Stack the files +my $outputFile = "$camera.$det_type.$det_id.$iter.$class_id"; # Root name +my $outputSubD = "$camera.$det_type.$det_id"; +my $outputRoot = File::Spec->catfile( $workdir, $outputSubD, $outputFile ); +my $outputStack = $outputRoot . '.fits'; # Output name +my $outputStats = $outputRoot . '.stats'; # Statistics name + +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$ppMerge $outputStack"; # Command to run + foreach my $file (@$files) { + my $uri = $file->{uri}; # URI for input file + $uri = $ipprc->convert_filename_absolute($uri); + $command .= ' ' . $uri; + } + $command .= " -recipe PPMERGE $recipe"; + $command .= ' -type ' . uc($det_type); # Type of stacking to perform + $command .= " -stats $outputStats"; # Statistics output filename + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppMerge: $error_code", $det_id, $iter, $class_id, $error_code); + } + &my_die("Unable to find expected output file: $outputStack\n", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputStack; + &my_die("Unable to find expected output file: $outputStats\n", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + + # Get the statistics on the stacked image + open(my $statsFile, "$outputStats") or + &my_die("Can't open statistics file $outputStats: $!", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR); + my $contents = do { local $/; <$statsFile> }; # Contents of file + close($statsFile); + + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse($contents) or + &my_die("Unable to parse metadata config doc", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR); + $stats = PS::IPP::Metadata::Stats->new(); # Stats parser + $stats->parse($metadata) or + &my_die("Unable to find all values in statistics output.", $det_id, $iter, $class_id, $PS_EXIT_SYS_ERROR); +} + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); +my $bg_mean_stdev = ($stats->bg_mean_stdev() or 'NAN'); + +# Add the resultant into the database +$outputStack = $ipprc->convert_filename_relative($outputStack); +unless ($no_update) { + my $command = "$dettool -addstacked -det_id $det_id -iteration $iter -class_id $class_id" . + " -uri $outputStack -recip $recipe"; # Command to run + $command .= " -bg $bg -bg_stdev $bg_stdev -bg_mean_stdev $bg_mean_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform dettool -addstacked: $error_code\n"); + exit($error_code); + } + + unlink $outputStats; +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $det_id = shift; # Detrend identifier + my $iter = shift; # Iteration + my $class_id = shift; # Class identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($det_id and $iter and $class_id and not $no_update) { + my $command = "$dettool -addstacked -det_id $det_id -iteration $iter -class_id $class_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/diff_skycell.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/diff_skycell.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/diff_skycell.pl (revision 12167) @@ -0,0 +1,219 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($diff_id, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'diff_id|d=s' => \$diff_id, # Diff identifier + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, # Don't update the database? + 'no-op' => \$no_op, # Don't do any operations? +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --diff_id", + -exitval => 3, + ) unless defined $diff_id; + +# Look for programs we need +my $missing_tools; +my $difftool = can_run('difftool') or (warn "Can't find difftool" and $missing_tools = 1); +my $pois = can_run('pois') or (warn "Can't find pois" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +# Get list of components for subtraction +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files +my $files; +{ + my $command = "$difftool -inputskyfile -diff_id $diff_id"; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform difftool -inputskyfile: $error_code", $diff_id, $error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $diff_id, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $diff_id, $PS_EXIT_PROG_ERROR); +} + +&my_die("Subtraction list contains more than two elements", $diff_id, $PS_EXIT_SYS_ERROR) unless + scalar @$files == 2; + +# Identify the input and the template +my $input; # Input file +my $template; # Template file +my $skycell_id; # Skycell identifier +my $camera; # Camera +foreach my $file (@$files) { + my $uri = $ipprc->convert_filename_absolute( $file->{uri} ); # URI for file + if (defined $file->{template} and $file->{template}) { + $template = $uri; + } else { + $input = $uri; + } + if (defined $skycell_id) { + &my_die("Skycell identifiers don't match", $diff_id, $PS_EXIT_SYS_ERROR) unless + $file->{skycell_id} eq $skycell_id; + } else { + $skycell_id = $file->{skycell_id}; + } + if (defined $camera) { + &my_die("Cameras don't match", $diff_id, $PS_EXIT_SYS_ERROR) unless $file->{camera} eq $camera; + } else { + $camera = $file->{camera}; + } +} + +&my_die("Unable to identify template", $diff_id, $PS_EXIT_SYS_ERROR) unless defined $template; +&my_die("Unable to identify input", $diff_id, $PS_EXIT_SYS_ERROR) unless defined $input; +&my_die("Unable to identify camera", $diff_id, $PS_EXIT_SYS_ERROR) unless defined $camera; +$ipprc->define_camera($camera); + +### Working directory +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $input ); + $workdir = $dir; +} + +# Get the output filenames +my $outputFile = "$skycell_id.sub.$diff_id"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $outputFile ); + +my $outputName = $outputRoot . ".fits"; +my $bin1Name = $ipprc->filename("PPIMAGE.BIN1", $outputRoot); +my $bin2Name = $ipprc->filename("PPIMAGE.BIN2", $outputRoot); +my $outputStats = $outputRoot . '.stats'; + +# Perform subtraction +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$pois $template $input $outputName"; # Command to run pois + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $diff_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputName", $diff_id, $PS_EXIT_SYS_ERROR) unless -f $outputName; +# &my_die("Couldn't find expected output file: $bin1Name", $diff_id, $PS_EXIT_SYS_ERROR) unless -f $bin1Name; +# &my_die("Couldn't find expected output file: $bin2Name", $diff_id, $PS_EXIT_SYS_ERROR) unless -f $bin2Name; +# &my_die("Couldn't find expected output file: $outputStats", $diff_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + + # Get the statistics on the residual image + if (0) { ### Disabled because pois doesn't output stats yet + my $statsFile; # File handle + open $statsFile, $outputStats or &my_die("Can't open statistics file $outputStats: $!", $diff_id, $PS_EXIT_SYS_ERROR); + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $metadata = $mdcParser->parse(join "", @contents) or + &my_die("Unable to parse metadata config doc", $diff_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $diff_id, $PS_EXIT_PROG_ERROR); + } +} + +# Add the processed file to the database +$outputName = $ipprc->convert_filename_relative( $outputName ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); + +unless ($no_update) { + + # Add the subtraction result + { + my $command = "$difftool -adddiffskyfile -diff_id $diff_id -uri $outputName"; # -path_base $outputRoot"; + $command .= " -bg $bg -bg_stdev $bg_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform difftool -adddiffskyfile: $error_code", $diff_id, $error_code); + } + +# unlink $outputStats; + } + + # Register the run as completed + { + my $command = "$difftool -updaterun -diff_id $diff_id -state stop"; # Command to run difftool + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform difftool -updaterun: $error_code\n"); + exit($error_code); + } + } +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $diff_id = shift; # Diff identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($diff_id and not $no_update) { + my $command = "$difftool -updaterun -diff_id $diff_id -state stop -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $exit = $?; + system("sync") == 0 or die "failed to execute sync: $!"; + $? = $exit; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/ipp_datapath.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_datapath.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_datapath.pl (revision 12167) @@ -0,0 +1,15 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use PS::IPP::Config; +my $ipprc = PS::IPP::Config->new(); + +die "No filename specified.\n" if scalar @ARGV != 1; + +print $ipprc->convert_filename_absolute(shift @ARGV) . "\n"; + +1; + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/ipp_filename.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_filename.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_filename.pl (revision 12167) @@ -0,0 +1,19 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use PS::IPP::Config; +my $ipprc = PS::IPP::Config->new(); + +die "USAGE: ipp_filename.pl (filerule) (output) (classID)\n" if scalar @ARGV != 3; + +my $filerule = $ARGV[0]; +my $output = $ARGV[1]; +my $classID = $ARGV[2]; + +print $ipprc->convert_filename_absolute($filerule, $output, $classID) . "\n"; + +1; + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_camera.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_camera.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_camera.pl (revision 12167) @@ -0,0 +1,73 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($dbname, # Database name to use + $workdir, # Working directory + $no_op, # No operations? + $no_update, # No updating? + ); +GetOptions( + 'dbname|d=s' => \$dbname, + 'workdir|w=s' => \$workdir, + 'no-op' => \$no_op, + 'no-update' => \$no_update, +) or pod2usage( 2 ); + +pod2usage( + -msg => "Required options: --dbname", + -exitval => 3, + ) unless defined $dbname; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Metadata config parser + +# Look for programs we need +my $missing_tools; +my $camtool = can_run('camtool') or (warn "Can't find camtool" and $missing_tools = 1); +my $camera_exp = can_run('camera_exp.pl') or (warn "Can't find camera_exp.pl" and $missing_tools = 1); +die "Can't find required tools.\n" if $missing_tools; + +# Camera exposure processing +my $list; +{ + my $command = "$camtool -pendingexp -dbname $dbname"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get camera exposure list: $error_code\n" if not $success; + $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from camtool.\n"; +} + +foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $camera = $item->{camera}; + + my $command = "$camera_exp --exp_tag $exp_tag --camera $camera --dbname $dbname"; + $command .= " --no-op" if defined $no_op; + $command .= " --no-update" if defined $no_update; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do camera processing on $exp_tag: $error_code\n" if not $success; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +__END__ + + Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_chip.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_chip.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_chip.pl (revision 12167) @@ -0,0 +1,75 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($dbname, # Database name to use + $workdir, # Working directory + $no_op, # No operations? + $no_update, # No updating? + ); +GetOptions( + 'dbname|d=s' => \$dbname, + 'workdir|w=s' => \$workdir, + 'no-op' => \$no_op, + 'no-update' => \$no_update, +) or pod2usage( 2 ); + +pod2usage( + -msg => "Required options: --dbname", + -exitval => 3, + ) unless defined $dbname; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Metadata config parser + +# Look for programs we need +my $missing_tools; +my $chiptool = can_run('chiptool') or (warn "Can't find chiptool" and $missing_tools = 1); +my $chip = can_run('chip_imfile.pl') or (warn "Can't find chip_imfile.pl" and $missing_tools = 1); +die "Can't find required tools.\n" if $missing_tools; + +# Phase 2 imfile processing +my $list; +{ + my $command = "$chiptool -pendingimfile -dbname $dbname"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get phase 2 imfile list: $error_code\n" if not $success; + $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from chiptool.\n"; +} + +foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $camera = $item->{camera}; + my $class_id = $item->{class_id}; + my $uri = $item->{uri}; + + my $command = "$chip --exp_tag $exp_tag --class_id $class_id --uri $uri --dbname $dbname --camera $camera"; + $command .= " --no-op" if defined $no_op; + $command .= " --no-update" if defined $no_update; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do phase 2 processing on $exp_tag $class_id: $error_code\n" if not $success; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +__END__ + + Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_detrend.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_detrend.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_detrend.pl (revision 12167) @@ -0,0 +1,296 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +my ($dbname, # Database name to use + $workdir, # Working directory + ); +GetOptions( + 'dbname|d=s' => \$dbname, + 'workdir|w=s' => \$workdir, +) or pod2usage( 2 ); + +pod2usage( + -msg => "Required options: --dbname", + -exitval => 3, + ) unless defined $dbname; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Metadata config parser + +# Look for programs we need +my $missing_tools; +my $dettool = can_run('dettool') or (warn "Can't find dettool" and $missing_tools = 1); +my $detrend_process_imfile = can_run('detrend_process_imfile.pl') or (warn "Can't find detrend_process_imfile.pl" and $missing_tools = 1); +my $detrend_process_exp = can_run('detrend_process_exp.pl') or (warn "Can't find detrend_process_exp.pl" and $missing_tools = 1); +my $detrend_stack = can_run('detrend_stack.pl') or (warn "Can't find detrend_stack.pl" and $missing_tools = 1); +my $detrend_norm_calc = can_run('detrend_norm_calc.pl') or (warn "Can't find detrend_norm_calc.pl" and $missing_tools = 1); +my $detrend_norm_apply = can_run('detrend_norm_apply.pl') or (warn "Can't find detrend_norm_apply.pl" and $missing_tools = 1); +my $detrend_norm_exp = can_run('detrend_norm_exp.pl') or (warn "Can't find detrend_norm_exp.pl" and $missing_tools = 1); +my $detrend_resid = can_run('detrend_resid.pl') or (warn "Can't find detrend_resid.pl" and $missing_tools = 1); +my $detrend_reject_imfile = can_run('detrend_reject_imfile.pl') or (warn "Can't find detrend_reject_imfile.pl" and $missing_tools = 1); +my $detrend_reject_exp = can_run('detrend_reject_exp.pl') or (warn "Can't find detrend_reject_exp.pl" and $missing_tools = 1); +die "Can't find required tools.\n" if $missing_tools; + +# Process raw imfiles +{ + my $command = "$dettool -toprocessedimfile"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get detrend raw list: $error_code\n" if not $success; + + my @whole = split /\n/, join( '', @$stdout_buf ); + my @single = (); + + while ( scalar @whole > 0 ) { + my $value = shift @whole; + push @single, $value; + if ($value =~ /^\s*END\s*$/) { + push @single, "\n"; + + my $list = parse_md_list( $mdcParser->parse( join( "\n", @single ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $det_id = $item->{det_id}; + my $det_type = $item->{det_type}; + my $exp_tag = $item->{exp_tag}; + my $class = $item->{class}; + my $class_id = $item->{class_id}; + my $uri = $item->{uri}; + my $camera = $item->{camera}; + + my $command = "$detrend_process_imfile --det_id $det_id --exp_tag $exp_tag --class $class --class_id $class_id --det_type $det_type --input_uri $uri --camera $camera --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do raw imfile processing on $exp_tag $class_id: $error_code\n" if not $success; + } + + @single = (); + + } + } +} + +# Process raw exposures +{ + my $command = "$dettool -toprocessedexp"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get detrend raw list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $camera = $item->{camera}; + my $det_id = $item->{det_id}; + + my $command = "$detrend_process_exp --det_id $det_id --exp_tag $exp_tag --camera $camera --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do raw exposure processing on $det_id $exp_tag: $error_code\n" if not $success; + } +} + +# Stack +{ + my $command = "$dettool -tostacked"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get stack list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $class_id = $item->{class_id}; + my $det_type = $item->{det_type}; + my $camera = $item->{camera}; + + my $command = "$detrend_stack --det_id $det_id --iteration $iteration --class_id $class_id --det_type $det_type --camera $camera --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to stack detrend $det_id $iteration $class_id: $error_code\n" if not $success; + } +} + +# Calculate normalisation +{ + my $command = "$dettool -tonormalizedstat"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get normalise calculation list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $det_type = $item->{det_type}; + + my $command = "$detrend_norm_calc --det_id $det_id --iteration $iteration --det_type $det_type --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to calculate normalisation for $det_id $iteration: $error_code\n" if not $success; + } +} + +# Apply normalisation +{ + my $command = "$dettool -tonormalize"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get normalisation list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $det_type = $item->{det_type}; + my $class_id = $item->{class_id}; + my $value = $item->{norm}; + my $uri = $item->{uri}; + my $camera = $item->{camera}; + + my $command = "$detrend_norm_apply --det_id $det_id --iteration $iteration --class_id $class_id --value $value --input_uri $uri --camera $camera --det_type $det_type --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to apply normalisation for $det_id $iteration $class_id: $error_code\n" if not $success; + } +} + +# Examine normalised exposure +{ + my $command = "$dettool -tonormalizedexp"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get normalised exposures list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $det_type = $item->{det_type}; + my $class_id = $item->{class_id}; + my $value = $item->{norm}; + my $uri = $item->{uri}; + my $camera = $item->{camera}; + + my $command = "$detrend_norm_exp --det_id $det_id --iteration $iteration --camera $camera --det_type $det_type --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to examine normalised exposure for $det_id $iteration: $error_code\n" if not $success; + } +} + +# Get residuals +{ + my $command = "$dettool -toresidimfile"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get residual processing list: $error_code\n" if not $success; + + my @whole = split /\n/, join( '', @$stdout_buf ); + my @single = (); + + while ( scalar @whole > 0 ) { + my $value = shift @whole; + push @single, $value; + if ($value =~ /^\s*END\s*$/) { + push @single, "\n"; + + my $list = parse_md_list( $mdcParser->parse( join( "\n", @single ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $camera = $item->{camera}; + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $class_id = $item->{class_id}; + my $det_type = $item->{det_type}; + my $detrend = $item->{det_uri}; + my $uri = $item->{uri}; + my $mode = $item->{mode}; + + my $command = "$detrend_resid --det_id $det_id --iteration $iteration --exp_tag $exp_tag --class_id $class_id --det_type $det_type --camera $camera --input_uri $uri --mode $mode --dbname $dbname"; + $command .= " --detrend $detrend" if defined $detrend; + $command .= " --workdir $workdir" if defined $workdir; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do residual processing on $exp_tag $class_id: $error_code\n" if not $success; + } + + @single = (); + + } + } +} + +# Reject based on imfiles +{ + my $command = "$dettool -toresidexp"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get residual imfile list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $camera = $item->{camera}; + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $det_type = $item->{det_type}; + + my $command = "$detrend_reject_imfile --det_id $det_id --iteration $iteration --exp_tag $exp_tag --det_type $det_type --camera $camera --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do imfile rejection on $exp_tag $det_id $iteration: $error_code\n" if not $success; + } +} + +# Reject based on exposures +{ + my $command = "$dettool -residdetrun"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get residual exposure list: $error_code\n" if not $success; + my $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from dettool.\n"; + + foreach my $item (@$list) { + my $camera = $item->{camera}; + my $det_id = $item->{det_id}; + my $iteration = $item->{iteration}; + my $det_type = $item->{det_type}; + + my $command = "$detrend_reject_exp --det_id $det_id --iteration $iteration --det_type $det_type --camera $camera --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do exposure rejection on $det_id $iteration: $error_code\n" if not $success; + } +} + + +__END__ + + Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject.pl (revision 12167) @@ -0,0 +1,98 @@ +#!/usr/bin/env perl + +# this program injects a list of single-file exposures into the db, taking the +# filename (without .fits) as the exp_tag. + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use File::Spec; +use File::Find::Rule; +use PS::IPP::Config; +my $ipprc = PS::IPP::Config->new(); +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +# Parse the command-line arguments +my ($workdir, $dbname); +GetOptions( + 'workdir|w=s' => \$workdir, # working directory for output files + 'dbname|d=s' => \$dbname # Database name +) or pod2usage( 2 ); + +pod2usage( -msg => "Usage: $0 [--workdir path] [--dbname dbname] (files)", -exitval => 2 ) if scalar @ARGV == 0; + +my $pxinject = can_run('pxinject') or die "Can't find pxinject\n"; +my $ppStats = can_run('ppStats') or die "Can't find ppStats\n"; + +# if workdir is not defined, assign the current path +# XXX we need to handle relative paths for workdir (not allowed) +if (! $workdir) { + $workdir = File::Spec->rel2abs( "." ); +} + +my $num = 0; +foreach my $file ( @ARGV ) { + my $absfile = File::Spec->rel2abs( $file ); + inject($absfile, $workdir, $dbname); + $num ++; +} + +print "$num files injected.\n"; + +sub inject +{ + my $absfile = shift; # absolute path for this file + my $workdir = shift; # absolute path for output directory + my $dbname = shift; + + my ( $vol, $path, $name ) = File::Spec->splitpath( $absfile ); + my ( $exp ) = $name =~ /(.*)\.fits/; + + my $relfile = $ipprc->convert_filename_relative( $absfile ); + + my $command_type = "$ppStats -concept FPA.OBSTYPE -concept FPA.TELESCOPE -concept FPA.INSTRUMENT $absfile"; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = run(command => $command_type, verbose => 1); + die "Unable to perform ppStats: $error_code\n" if not $success; + my $metadata = $mdcParser->parse(join "", @$stdout_buf) + or die "unable to parse metadata config doc"; + + my $type; + my $telescope; + my $instrument; + foreach my $row (@$metadata) { + if ($row->{name} eq "FPA.TELESCOPE") { $telescope = $row->{value}; } + if ($row->{name} eq "FPA.INSTRUMENT") { $instrument = $row->{value}; } # this entry must return the camera in the ipp/config system which we load +# if ($row->{name} eq "FPA.OBSTYPE") { $type = $row->{value}; } + } + + my $command_exp = "$pxinject -newExp -exp_id $exp -inst $instrument -telescope $telescope -imfiles 1 -workdir $workdir" ; # Command to run + if ($dbname) { + $command_exp = "$command_exp -dbname $dbname"; + } + + my ( $success_exp, $error_code_exp, $full_buf_exp, $stdout_buf_exp, $stderr_buf_exp ) = + run( command => $command_exp, verbose => 1 ); + die "Unable to inject $exp: $error_code_exp\n" if not $success_exp; + + my @line = split(/\s+/, $$stdout_buf_exp[0]); # The output line, containing the exposure tag + my $exp_tag = $line[2]; # The exposure tag + + my $command_imfile = "$pxinject -newImfile -exp_tag $exp_tag -class fpa -class_id fpa -uri $relfile"; # Command to run + if ($dbname) { + $command_imfile = "$command_imfile -dbname $dbname"; + } + + my ( $success_imfile, $error_code_imfile, $full_buf_imfile, $stdout_buf_imfile, $stderr_buf_imfile ) = run( command => $command_imfile, verbose => 1 ); + die "Unable to inject $exp imfile: $error_code_imfile\n" if not $success_imfile; + + return 1; +} + + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject_mosaic.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject_mosaic.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_inject_mosaic.pl (revision 12167) @@ -0,0 +1,91 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($camera, # Camera used + $telescope, # Telescope used + $exp_type, # Type of exposure + $path, # Path to use + ); +GetOptions( + 'camera|c=s' => \$camera, + 'telescope|t=s' => \$telescope, + 'exp_type|e=s' => \$exp_type, + 'path=s' => \$path, +) or pod2usage( 2 ); + +pod2usage( + -msg => "Required options: --camera --telescope --exp_type --path", + -exitval => 3, + ) unless scalar @ARGV == 0 or (defined $camera + and defined $telescope + and defined $exp_type + and defined $path); + +my $mdcParser = PS::IPP::Metadata::Config->new; # Metadata config parser + +# Look for programs we need +my $missing_tools; +my $pxinject = can_run('pxinject') or (warn "Can't find pxinject" and $missing_tools = 1); + +# Inject new data into the database +if (scalar @ARGV != 0) { + my @classes; + my $imfiles; + if ($camera eq "MEGACAM") { + for (my $i = 0; $i < 36; $i++) { + push @classes, sprintf("ccd%02d", $i); + } + } elsif ($camera eq "MCSHORT") { + @classes = ( 'ccd12', 'ccd13', 'ccd14', 'ccd21', 'ccd22', 'ccd23' ); + } elsif ($camera eq "CTIO_MOSAIC2") { + @classes = (); + } else { + die "Unrecognised camera name: $camera.\n"; + } + + foreach my $exp ( @ARGV ) { + my $command = "$pxinject -newExp -exp_id $exp -inst $camera -telescope $telescope -exp_type $exp_type -imfiles " . (scalar @classes or 1) ; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to inject $exp: $error_code\n" if not $success; + + my @line = split(/\s+/, $$stdout_buf[0]); # The output line, containing the exposure tag + my $exp_tag = $line[2]; # The exposure tag + foreach my $class_id (@classes) { + my $command = "$pxinject -newImfile -exp_tag $exp_tag -class chip -class_id $class_id -uri $path/$exp.$class_id.fits"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to inject $exp $class_id: $error_code\n" if not $success; + } + + if (scalar @classes == 0) { + my $command = "$pxinject -newImfile -exp_tag $exp_tag -class fpa -class_id fpa -uri $path/$exp.fits"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to inject $exp imfile: $error_code\n" if not $success; + } + + } +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +__END__ + + Index: /branches/rel-1-1/ippScripts/scripts/ipp_serial_register.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/ipp_serial_register.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/ipp_serial_register.pl (revision 12167) @@ -0,0 +1,90 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($dbname, # Database name to use + $workdir, # Working directory + ); +GetOptions( + 'dbname|d=s' => \$dbname, + 'workdir|w=s' => \$workdir, +) or pod2usage( 2 ); + +pod2usage( + -msg => "Required options: --dbname", + -exitval => 3, + ) unless defined $dbname; + +my $mdcParser = PS::IPP::Metadata::Config->new; # Metadata config parser + +# Look for programs we need +my $missing_tools; +my $regtool = can_run('regtool') or (warn "Can't find regtool" and $missing_tools = 1); +my $register_imfile = can_run('register_imfile.pl') or (warn "Can't find register_imfile.pl" and $missing_tools = 1); +my $register_exp = can_run('register_exp.pl') or (warn "Can't find register_exp.pl" and $missing_tools = 1); +die "Can't find required tools.\n" if $missing_tools; + +# Phase 0 imfile processing +my $list; +{ + my $command = "$regtool -pendingimfile -dbname $dbname"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get phase 0 imfile list: $error_code\n" if not $success; + $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from regtool.\n"; +} + +foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + my $class = $item->{class}; + my $class_id = $item->{class_id}; + my $uri = $item->{uri}; + + my $command = "$register_imfile --exp_tag $exp_tag --class $class --class_id $class_id --uri $uri --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do phase 0 imfile processing on $exp_tag $class_id: $error_code\n" if not $success; +} + +# Phase 0 exposure processing +{ + my $command = "$regtool -pendingexp -dbname $dbname"; # Command to run + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to get phase 0 exposure list: $error_code\n" if not $success; + $list = parse_md_list( $mdcParser->parse( join( '', @$stdout_buf ) ) ) or + die "Unable to parse output from regtool.\n"; +} + +foreach my $item (@$list) { + my $exp_tag = $item->{exp_tag}; + + my $command = "$register_exp --exp_tag $exp_tag --dbname $dbname"; + $command .= " --workdir $workdir" if defined $workdir; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run( command => $command, verbose => 1 ); + die "Unable to do phase 0 exposure processing on $exp_tag: $error_code\n" if not $success; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + + +__END__ + + Index: /branches/rel-1-1/ippScripts/scripts/mdc2list.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/mdc2list.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/mdc2list.pl (revision 12167) @@ -0,0 +1,77 @@ +#!/usr/bin/env perl + +# Program to convert a PS metadata config syntax (usually from one of +# the IPP tools) into a flat tab-delimited list suitable for parsing +# using "split". + +# Copyright (C) 2006 Joshua Hoblitt, Paul A. Price. + +use strict; +use warnings; + +use PS::IPP::Metadata::Config; # Supplies the metadata config parser. + +die "Program to convert a PS metadata config file (usually from one of the IPP\n" . + "tools) into a flat tab-delimited list suitable for parsing using \'split\'.\n\n" . + "Usage: $0 [INFILE [OUTFILE]]\n" if ((join "", @ARGV) =~ /--help/ or scalar @ARGV > 2); + +my $inFile; # Input file +my $outFile; # Output file +if (scalar @ARGV >= 1) { + my $inName = shift @ARGV; + open $inFile, $inName or die "Can't open $inName: $!\n"; + if (scalar @ARGV == 1) { + my $outName = shift @ARGV; + open $outFile, ">", $outName or die "Can't open $outName: $!\n"; + } else { + $outFile = *STDOUT; + } +} else { + $inFile = *STDIN; + $outFile = *STDOUT; +} + +my @input = <$inFile>; # Contents of the metadata config file +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files +my $md = $mdcParser->parse(join "", @input) + or die "unable to parse metadata config doc"; +my $hashes = mds2hashes($md); # An array of hashes +foreach my $pending (@$hashes) { + foreach my $key (keys %$pending) { + print $outFile ( $pending->{$key} . "\t"); + } + print $outFile "\n"; +} + +### Pau. + + +# Given an array of MDs, return an array of hashes +sub mds2hashes +{ + my $mds = shift; # Reference to the metadatas + my @array; # The array of hashes, to be returned + foreach my $md (@$mds) { + my $values = md2hash($md->{value}); + push @array, $values; + } + return \@array; +} + +# Convert the metadata to a hash; in effect, strips out the comment, type and class fields. +sub md2hash +{ + my $values = shift; # Reference to the metadata + my %hash; # Hash, to be returned + foreach my $data (@$values) { + $hash{$data->{name}} = $data->{value}; + } + return \%hash; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} Index: /branches/rel-1-1/ippScripts/scripts/register_exp.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/register_exp.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/register_exp.pl (revision 12167) @@ -0,0 +1,267 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use Cache::File; +use Storable qw( freeze thaw ); +use File::Basename qw( basename ); +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Statistics::Descriptive; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); + +my ($cache, $exptag, $workdir, $dbname, $no_update); + +GetOptions( + 'caches' => \$cache, + 'exp_tag|e=s' => \$exptag, + 'workdir|w=s' => \$workdir, # Working directory for output files + 'dbname|d=s' => \$dbname, # Database name + 'no-update' => \$no_update +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --exp_tag", + -exitval => 3, +) unless defined $exptag; + +# Define setup +use constant TYPE => "exp_type"; # Observation type keyword +use constant DETRENDS => [ "bias", "zero", "dark", "shutter", "flat", "fringe", "domeflat", "skyflat" ]; # Observation types to mark as detrend +use constant DETREND_FLAG => "-detrend"; # Flag to use to mark detrend exposure + +use constant REGISTER_URI => 'uri'; # Key for the URI +use constant REGISTER_CLASSID => 'class_id'; # Key for the class id +use constant REGISTER_BG => 'bg'; # Key for the background +use constant REGISTER_BG_STDEV => 'bg_stdev'; # Key for the background standard deviation +use constant REGISTER_BG_MEAN_STDEV => 'bg_mean_stdev'; # Key for the mean of the background standard deviation + +# These values should be constant for all components +use constant CONSTANTS => [ + "object", # Object + "exp_type", # Exposure type + "filter", # Filter used + "airmass", # Airmass + "ra", # Right ascension + "decl", # Declination + "posang", # Position angle + "alt", # Altitude + "az", # Azimuth + "ccd_temp", # CCD temperature + "dateobs", # Time of exposure + ]; + +# These values may vary across components; we will take the average +use constant VARIABLES => [ + "exp_time", # Exposure time + ]; + + +# Look for commands we need +my $missing_tools; +my $regtool = can_run('regtool') + or (warn "can't find regtool" and $missing_tools = 1); +my $ppStats = can_run('ppStats') + or (warn "can't find ppStats" and $missing_tools = 1); + +if ($missing_tools) { + warn ("Can't find required tools"); + exit($PS_EXIT_CONFIG_ERROR); +} + +# setup cache interface + +my $c = Cache::File->new( + cache_root => File::Spec->catdir($ENV{'HOME'}, '.pxtools', basename($0)), + default_expires => '7200 sec', +); + +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + +# Get the list of imfiles +my $imfiles; +{ + my $command = "$regtool -processedimfile -exp_tag $exptag"; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + cache_run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn ("Unable to perform regtool -processedimfile on exposure id $exptag: $error_code"); + exit ($error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf); + unless ($metadata) { + warn ("Unable to parse metadata config doc"); + &my_die ($exptag, $PS_EXIT_PROG_ERROR); + } + $imfiles = parse_md_list($metadata); # Data for imfiles +} + +# Process the values +my %values; # Values to update +foreach my $variable (@{VARIABLES()}) { + $values{$variable} = []; +} +my @backgrounds; # Array of backgrounds +my @variances; # Array of background standard deviations\ +my $obsType; # Observation type + +foreach my $imfile (@$imfiles) { + foreach my $constant (@{CONSTANTS()}) { + my $value = get_value($imfile, $constant); # Value for imfile + if (not defined $values{$constant}) { + $values{$constant} = $value; + } + if ($values{$constant} ne $value) { + warn ("Value of $constant for $imfile->{REGISTER_CLASSID} doesn't match previous value"); + &my_die ($exptag, $PS_EXIT_PROG_ERROR); + } + } + + foreach my $variable (@{VARIABLES()}) { + my $value = get_value($imfile, $variable); # Value for imfile + my $array = $values{$variable}; # Array of data + push @$array, $value; + } + + my $bg = get_value($imfile, REGISTER_BG()); + push @backgrounds, $bg; + + my $stdev = get_value($imfile, REGISTER_BG_MEAN_STDEV()); + push @variances, $stdev**2; +} + +if (0) { +# XXX for a test, randomly declare a failure and return to pantasks +my $rnd = rand(1); +if ($rnd > 0.5) { + warn ("random failure"); + &my_die ($exptag, $PS_EXIT_DATA_ERROR); +} +} + +# Output results to the database +unless ($no_update) { + my @command; + push @command, $regtool, '-addprocessedexp', '-exp_tag', $exptag; # Command to execute to update exposure parameters + + # Add the values of interest + foreach my $constant (@{CONSTANTS()}) { + push @command, ( '-' . $constant ), $values{$constant}; + } + foreach my $variable (@{VARIABLES()}) { + my $array = $values{$variable}; # Array of values + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@$array); + push @command, ( '-' . $variable ), $stats->mean(); + } + + # Add the statistics + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@backgrounds); + push @command, ( '-' . REGISTER_BG() ), $stats->mean(); + push @command, ( '-' . REGISTER_BG_MEAN_STDEV() ), ( $stats->standard_deviation() || 0 ) + } + { + my $stats = Statistics::Descriptive::Sparse->new; # Statistics calculator + $stats->add_data(@variances); + push @command, ( '-' . REGISTER_BG_STDEV() ), sqrt( $stats->mean() ); + } + + # Add the detrend flag + foreach my $detrendType (@{DETRENDS()}) { + if (lc($values{TYPE()}) =~ /$detrendType/) { + push @command, DETREND_FLAG; + last; + } + } + + # Quote arguments with whitespace + for (my $i = 0; $i < scalar @command; $i++) { + if ($command[$i] =~ /\s/) { + $command[$i] = "\'$command[$i]\'"; + } + } + + push @command, "-dbname", $dbname if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + cache_run(command => \@command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn ("Unable to run regtool -addprocessedexp for $exptag: $error_code"); + exit($error_code); + } +} + +### Pau. + +# Get the value for a particular imfile, along with a strong check for its existence +sub get_value { + my $imfile = shift; # The hash of values + my $name = shift; # The name of the value to check + + my $source = $imfile->{REGISTER_CLASSID()}; # Where it comes from + + unless (defined $imfile->{$name}) { + warn ("Couldn't find value of $name for class_id=$source"); + &my_die ($exptag, $PS_EXIT_PROG_ERROR); + } + return $imfile->{$name}; +} + +sub cache_run +{ + my %p = @_; + + my $cmd_output = $c->get($p{command}) if $cache; + if (defined $cmd_output) { + return @{thaw $cmd_output}; + } else { + my @output = run(%p); + $c->set($p{command}, freeze \@output) if $cache; + return @output; + } +} + +sub my_die +{ + my $exp_tag = $_[0]; + my $exit_code = $_[1]; + if ($exp_tag and not $no_update) { + my $command = "$regtool -addprocessedexp -exp_tag $exp_tag -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system($command); + } + exit $exit_code; +} + +END { + my $exit = $?; + system("sync") == 0 or die "failed to execute sync: $!"; + $? = $exit; +} Index: /branches/rel-1-1/ippScripts/scripts/register_imfile.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/register_imfile.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/register_imfile.pl (revision 12167) @@ -0,0 +1,250 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use Cache::File; +use Storable qw(freeze thaw); +use File::Basename qw( basename); +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); + +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($cache, $exp_tag, $class_id, $uri, $workdir, $dbname, $no_update); + +# print "args: @ARGV\n"; +# for (my $i = 0; $i < @ARGV; $i++) { +# print "arg $i: ...$ARGV[$i]...\n"; +# } + +GetOptions( + 'caches' => \$cache, + 'exp_tag|e=s' => \$exp_tag, + 'class_id|i=s' => \$class_id, + 'uri|u=s' => \$uri, + 'workdir|w=s' => \$workdir, # Working directory for output files + 'dbname|d=s' => \$dbname,# Database name + 'no-update' => \$no_update +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --exp_tag --class_id --uri", + -exitval => 3, +) unless defined $exp_tag + and defined $class_id + and defined $uri; + +my $RECIPE = "PPSTATS_PHASE0"; # Recipe to use for ppStats +# use constant RECIPE => "PPSTATS_PHASE0"; # Recipe to use for ppStats + +# These values should be constant for all components +# The key is the name in the ppStats output; the value is the switch for "phase0 -updateexp" +use constant CONSTANTS => { + "FPA.OBJECT" => "-object", # Object + "FPA.OBSTYPE" => "-exp_type", # Exposure type + "FPA.FILTER" => "-filter", # Filter used + "FPA.AIRMASS" => "-airmass", # Airmass + "FPA.RA" => "-ra", # Right ascension + "FPA.DEC" => "-decl", # Declination + "FPA.ALT" => "-alt", # Altitude + "FPA.AZ" => "-az", # Azimuth + "FPA.POSANGLE" => "-posang", # Position angle + "FPA.TIME" => "-dateobs", # Date of observation (UTC) + }; + +# These values may vary across components; we will take the average +# The key is the name in the ppStats output; the value is the switch for "phase0 -updateexp" +use constant VARIABLES => { + "CHIP.TEMP" => "-ccd_temp", # CCD temperature + "CELL.EXPOSURE" => "-exp_time" # Exposure time + }; + + +# Switches for regtool +use constant REGTOOL_MODE => '-addprocessedimfile'; # Mode for regtool +use constant REGTOOL_EXPTAG => '-exp_tag'; # Switch to specify the exposure id +use constant REGTOOL_CLASSID => '-class_id'; # Switch to specify the class id +use constant REGTOOL_BG_MEAN => '-bg'; # Switch to add the background +use constant REGTOOL_BG_STDEV => '-bg_stdev'; # Switch to add the bg stdev +use constant REGTOOL_BG_MEAN_STDEV => '-bg_mean_stdev'; # Switch to add the bg mean stdev + +# Look for programs we need +my $missing_tools; +my $regtool = can_run('regtool') + or (warn "Can't find regtool" and $missing_tools = 1); +my $ppStats = can_run('ppStats') + or (warn "Can't find ppStats" and $missing_tools = 1); + +if ($missing_tools) { + warn ("Can't find required tools"); + exit($PS_EXIT_CONFIG_ERROR); +} + +# setup cache interface + +my $c = Cache::File->new( + cache_root => File::Spec->catdir($ENV{'HOME'}, '.pxtools', basename($0)), + default_expires => '7200 sec', +); + +# Resolve the input URI +$uri = $ipprc->convert_filename_absolute($uri); + +# Run ppStats on the input file +my $stats; +{ + my $command = "$ppStats $uri -recipe PPSTATS $RECIPE"; # Command to run ppStats + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + cache_run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn ("Unable to perform ppStats on exposure id $exp_tag: $error_code"); + &my_die ($exp_tag, $class_id, $error_code); + } + + # Parse the output + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @$stdout_buf); # XXX is this join necessary? + unless ($metadata) { + warn ("Unable to parse metadata config doc"); + &my_die ($exp_tag, $class_id, $PS_EXIT_PROG_ERROR); + } + my @constants = keys %{CONSTANTS()}; # List of constants to parse out + my @variables = keys %{VARIABLES()}; # List of variables to parse out + $stats = PS::IPP::Metadata::Stats->new(\@constants, \@variables); # Stats parser + unless ($stats->parse($metadata)) { + warn ("Unable to find all values"); + &my_die ($exp_tag, $class_id, $PS_EXIT_PROG_ERROR); + # XXX is this a programming or a config error? + } + + if (0) { + # XXX for a test, randomly declare a failure and return to pantasks + my $rnd = rand(1); + if ($rnd > 0.5) { + warn ("random failure"); + &my_die ($exp_tag, $class_id, $PS_EXIT_DATA_ERROR); + } +} +} + +# Push the results into the database +unless ($no_update) { + my @command; + push @command, $regtool, REGTOOL_MODE(), REGTOOL_EXPTAG(), $exp_tag, REGTOOL_CLASSID(), $class_id; # Command to run regtool + + foreach my $constant (keys %{CONSTANTS()}) { + push @command, CONSTANTS->{$constant}, ($stats->data($constant))->{value}; + + } + foreach my $variable (keys %{VARIABLES()}) { + # Just use the mean value + push @command, VARIABLES->{$variable}, ($stats->data($variable))->{mean}; + } + + push @command, REGTOOL_BG_MEAN(); + if (defined $stats->bg_mean()) { + push @command, $stats->bg_mean(); + } else { + push @command, "NAN"; + } + push @command, REGTOOL_BG_STDEV(); + if (defined($stats->bg_stdev())) { + push @command, $stats->bg_stdev(); + } else { + # Will not be defined if there is only a single imfile + push @command, 0; + } + push @command, REGTOOL_BG_MEAN_STDEV(); + if (defined $stats->bg_mean_stdev()) { + push @command, $stats->bg_mean_stdev(); + } else { + push @command, "0.0"; + } + + # Quote arguments with whitespace + for (my $i = 0; $i < scalar @command; $i++) { + if ($command[$i] =~ /\s/) { + $command[$i] = "\'$command[$i]\'"; + } + } + + push @command, "-dbname", $dbname if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => \@command, verbose => 1); + + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + # XXX if we can't run -addprocessedimfile, we can't actually set the + # error code. + # XXX if this is not a database error, it is probably a + # programming error (in regtool or the passed args) + warn ("Unable to perform regtool -addprocessedimfile: $error_code"); + exit($error_code); + } +} + +sub cache_run +{ + my %p = @_; + + my $cmd_output = $c->get($p{command}) if $cache; + if (defined $cmd_output) { + return @{thaw $cmd_output}; + } else { + my @output = run(%p); + $c->set($p{command}, freeze \@output) if $cache; + return @output; + } +} + +sub my_die +{ + my $exp_tag = $_[0]; + my $class_id = $_[1]; + my $exit_code = $_[2]; + if ($exp_tag && $class_id and not $no_update) { + my $command = "$regtool -addprocessedimfile -exp_tag $exp_tag -class_id $class_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +# Pau. + +END { + my $exit = $?; + system("sync") == 0 or die "failed to execute sync: $!"; + $? = $exit; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/stack_skycell.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/stack_skycell.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/stack_skycell.pl (revision 12167) @@ -0,0 +1,213 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use PS::IPP::Metadata::List qw( parse_md_list ); +use Data::Dumper; + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($stack_id, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'stack_id|d=s' => \$stack_id, # Stack identifier + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, # Don't update the database? + 'no-op' => \$no_op, # Don't do any operations? +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --stack_id", + -exitval => 3, + ) unless defined $stack_id; + +# Look for programs we need +my $missing_tools; +my $stacktool = can_run('stacktool') or (warn "Can't find stacktool" and $missing_tools = 1); +my $ppStac = can_run('ppStac') or (warn "Can't find ppStac" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +# Get list of components for stacking +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files +my $files; +{ + my $command = "$stacktool -inputskyfile -stack_id $stack_id"; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform stacktool -inputskyfile: $error_code", $stack_id, $error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $stack_id, $PS_EXIT_PROG_ERROR); + $files = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $stack_id, $PS_EXIT_PROG_ERROR); +} + +&my_die("Subtraction list contains more than two elements", $stack_id, $PS_EXIT_SYS_ERROR) unless + scalar @$files >= 2; + +# Parse the list of input files, and get the skycell identifier +my $inputList; # List of input files +my $skycell_id; # Skycell identifier +my $camera; # Camera +foreach my $file (@$files) { + my $uri = $ipprc->convert_filename_absolute( $file->{uri} ); # URI for file + $inputList .= "$uri "; + if (defined $skycell_id) { + &my_die("Skycell identifiers don't match", $stack_id, $PS_EXIT_SYS_ERROR) unless + $file->{skycell_id} eq $skycell_id; + } else { + $skycell_id = $file->{skycell_id}; + } + if (defined $camera) { + &my_die("Cameras don't match", $stack_id, $PS_EXIT_SYS_ERROR) unless $file->{camera} eq $camera; + } else { + $camera = $file->{camera}; + } +} + +&my_die("Can't find camera", $stack_id, $PS_EXIT_SYS_ERROR) unless $camera; +$ipprc->define_camera($camera); + + +### Working directory +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my ($vol, $dir, $file) = File::Spec->splitpath( $ipprc->convert_filename_absolute( $$files[0]->{uri} ) ); + $workdir = $dir; +} + +# Get the output filenames +my $outputFile = "$skycell_id.stack.$stack_id"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $outputFile ); + +my $outputName = $outputRoot . ".fits"; +#my $bin1Name = $ipprc->filename("PPSTAC.BIN1", $outputRoot); +#my $bin2Name = $ipprc->filename("PPSTAC.BIN2", $outputRoot); +my $outputStats = $outputRoot . '.stats'; + +# Perform stacking +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$ppStac $outputName $inputList"; # Command to run pois + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform ppImage: $error_code", $stack_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputName", $stack_id, $PS_EXIT_SYS_ERROR) unless -f $outputName; +# &my_die("Couldn't find expected output file: $bin1Name", $stack_id, $PS_EXIT_SYS_ERROR) unless -f $bin1Name; +# &my_die("Couldn't find expected output file: $bin2Name", $stack_id, $PS_EXIT_SYS_ERROR) unless -f $bin2Name; +# &my_die("Couldn't find expected output file: $outputStats", $stack_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + + # Get the statistics on the residual image + if (0) { ### Disabled because ppStac doesn't output stats yet + my $statsFile; # File handle + open $statsFile, $outputStats or &my_die("Can't open statistics file $outputStats: $!", $stack_id, $PS_EXIT_SYS_ERROR); + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $metadata = $mdcParser->parse(join "", @contents) or + &my_die("Unable to parse metadata config doc", $stack_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $stack_id, $PS_EXIT_PROG_ERROR); + } +} + +# Add the processed file to the database +$outputName = $ipprc->convert_filename_relative( $outputName ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); + +unless ($no_update) { + + # Add the stack result + { + my $command = "$stacktool -addsumskyfile -stack_id $stack_id -uri $outputName"; # -path_base $outputRoot"; + $command .= " -bg $bg -bg_stdev $bg_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform stacktool -addsumskyfile: $error_code", $stack_id, $error_code); + } + +# unlink $outputStats; + } + + # Register the run as completed + { + my $command = "$stacktool -updaterun -stack_id $stack_id -state stop"; # Command to run stacktool + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform stacktool -updaterun: $error_code\n"); + exit($error_code); + } + } +} + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $stack_id = shift; # Stack identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($stack_id and not $no_update) { + my $command = "$stacktool -updaterun -stack_id $stack_id -state stop -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $exit = $?; + system("sync") == 0 or die "failed to execute sync: $!"; + $? = $exit; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/warp_overlap.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/warp_overlap.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/warp_overlap.pl (revision 12167) @@ -0,0 +1,155 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use PS::IPP::Metadata::List qw( parse_md_list ); + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($warp_id, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'warp_id|i=s' => \$warp_id, # Warp identifier + 'camera|c=s' => \$camera, # Camera name + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, # Don't update the database? + 'no-op' => \$no_op, # Don't do any operations +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --warp_id", + -exitval => 3, +) unless defined $warp_id + and defined $camera; + +# Look for programs we need +my $missing_tools; +my $warptool = can_run('warptool') or (warn "Can't find warptool" and $missing_tools = 1); +#my $overlap = can_run('overlap') or (warn "Can't find overlap" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +# Get list of component imfiles for exposure +my $imfiles; +{ + my $command = "$warptool -imfile -warp_id $warp_id"; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform warptool -imfile: $error_code", $warp_id, $error_code); + } + + my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $warp_id, $PS_EXIT_PROG_ERROR); + $imfiles = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $warp_id, $PS_EXIT_PROG_ERROR); +} + +unless ($no_op) { + +### Calculates, in some as-yet unknown way the overlaps between imfiles and skycells + +} else { + # Add in the skycell and tesselation for each imfile + foreach my $imfile (@$imfiles) { + $imfile->{skycell_id} = 'default'; + $imfile->{tess_id} = 'default'; + $imfile->{fault} = 0; + } +} + +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = $ipprc->convert_filename_absolute( $$imfiles[0]->{uri} ); + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} + +# Generate a MDC file with the overlaps +my $overlapName = File::Spec->catfile( $workdir, $warp_id . '.overlap.mdc' ); +open my $overlapFile, "> $overlapName" or die "Unable to open mdc file $overlapName"; +print $overlapFile "warpSkyCellMap MULTI\n\n"; +foreach my $imfile (@$imfiles) { + print $overlapFile "warpSkyCellMap\tMETADATA\n"; + print $overlapFile "\twarp_id\tS32\t" . $warp_id . "\n"; + print $overlapFile "\tskycell_id\tSTR\t" . $imfile->{skycell_id} . "\n"; + print $overlapFile "\ttess_id\t\tSTR\t" . $imfile->{tess_id} . "\n"; + print $overlapFile "\texp_tag\t\tSTR\t" . $imfile->{exp_tag} . "\n"; + print $overlapFile "\tcam_version\tS32\t" . $imfile->{cam_version} . "\n"; + print $overlapFile "\tclass_id\t\tSTR\t" . $imfile->{class_id} . "\n"; + print $overlapFile "\tfault\tS16\t" . $imfile->{fault} . "\n"; + print $overlapFile "END\n\n"; +} +close $overlapFile; + +# Add the processed file to the database +unless ($no_update) { + my $command = "$warptool -addoverlap -mapfile $overlapName"; # Command to run warptool + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform warptool -addoverlap: $error_code\n"); + exit($error_code); + } + + unlink $overlapName; +} + + + +sub my_die +{ + my $msg = shift; # Warning message on die + my $warp_id = shift; # Warp identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + + # No failure option on warptool for this mode, so just die. + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/scripts/warp_skycell.pl =================================================================== --- /branches/rel-1-1/ippScripts/scripts/warp_skycell.pl (revision 12167) +++ /branches/rel-1-1/ippScripts/scripts/warp_skycell.pl (revision 12167) @@ -0,0 +1,185 @@ +#!/usr/bin/env perl + +use warnings; +use strict; + +## report the program and machine +use Sys::Hostname; +my $host = hostname(); +print "\n\n"; +print "Starting script $0 on $host\n\n"; + +use vars qw( $VERSION ); +$VERSION = '0.01'; + +use IPC::Cmd qw( can_run run ); +use PS::IPP::Metadata::Config; +use PS::IPP::Metadata::Stats; +use PS::IPP::Metadata::List qw( parse_md_list ); + +use PS::IPP::Config qw( + $PS_EXIT_SUCCESS + $PS_EXIT_UNKNOWN_ERROR + $PS_EXIT_SYS_ERROR + $PS_EXIT_CONFIG_ERROR + $PS_EXIT_PROG_ERROR + $PS_EXIT_DATA_ERROR + $PS_EXIT_TIMEOUT_ERROR + ); +my $ipprc = PS::IPP::Config->new(); # IPP configuration +use File::Spec; + +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); +use Pod::Usage qw( pod2usage ); + +my ($warp_id, $skycell_id, $tess_id, $camera, $dbname, $workdir, $no_update, $no_op); +GetOptions( + 'warp_id|i=s' => \$warp_id, # Warp identifier + 'skycell_id|s=s' => \$skycell_id, # Skycell identifier + 'tess_id|s=s' => \$tess_id, # Tesselation identifier + 'camera|c=s' => \$camera, # Camera name + 'dbname|d=s' => \$dbname, # Database name + 'workdir|w=s' => \$workdir, # Working directory, for output files + 'no-update' => \$no_update, # Don't update the database? + 'no-op' => \$no_op, # Don't do any operations? +) or pod2usage( 2 ); + +pod2usage( -msg => "Unknown option: @ARGV", -exitval => 2 ) if @ARGV; +pod2usage( + -msg => "Required options: --warp_id --skycell_id --tess_id --camera", + -exitval => 3, +) unless defined $warp_id + and defined $skycell_id + and defined $tess_id + and defined $camera; + +$ipprc->define_camera($camera); + +# Look for programs we need +my $missing_tools; +my $warptool = can_run('warptool') or (warn "Can't find warptool" and $missing_tools = 1); +my $pswarp = can_run('pswarp') or (warn "Can't find pswarp" and $missing_tools = 1); +if ($missing_tools) { + warn("Can't find required tools."); + exit($PS_EXIT_CONFIG_ERROR); +} + +# Get list of component imfiles for exposure +my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files +my $imfiles; +{ + my $command = "$warptool -scmap -warp_id $warp_id -skycell_id $skycell_id -tess_id $tess_id"; + $command .= " -dbname $dbname" if defined $dbname; + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform warptool -scmap: $error_code", $warp_id, $skycell_id, $tess_id, $error_code); + } + + my $metadata = $mdcParser->parse(join "", @$stdout_buf) or + &my_die("Unable to parse metadata config doc", $warp_id, $skycell_id, $tess_id, $PS_EXIT_PROG_ERROR); + $imfiles = parse_md_list($metadata) or + &my_die("Unable to parse metadata list", $warp_id, $skycell_id, $tess_id, $PS_EXIT_PROG_ERROR); +} + +### Output file name +if (defined $workdir) { + $workdir = $ipprc->convert_filename_absolute( $workdir ); +} else { + my $example = $ipprc->convert_filename_absolute( $$imfiles[0]->{uri} ); + my ($vol, $dir, $file) = File::Spec->splitpath( $example ); + $workdir = $dir; +} +my $outputFile = "$skycell_id.warp.$warp_id"; # Root name +my $outputRoot = File::Spec->catfile( $workdir, $outputFile ); +my $outputImage = $ipprc->filename("PSWARP.OUTPUT", $outputRoot, $skycell_id ); +my $outputBin1 = $ipprc->filename("PSWARP.BIN1", $outputRoot, $skycell_id ); +my $outputBin2 = $ipprc->filename("PSWARP.BIN2", $outputRoot, $skycell_id ); +my $outputStats = $outputRoot . '.stats'; +my $listName = $outputRoot . '.list'; + +# Get list of filenames +open my $listFile, "> $listName" or &my_die("Unable to open $listName", $warp_id, $skycell_id, $tess_id, $PS_EXIT_SYS_ERROR); +foreach my $imfile (@$imfiles) { + my $uri = $ipprc->convert_filename_absolute( $imfile->{uri} ); + + print $listFile "$uri\n"; +} +close $listFile; + +# Run pswarp +my $stats = PS::IPP::Metadata::Stats->new(); # Stats parser +unless ($no_op) { + my $command = "$pswarp -list $listName $outputRoot -stat $outputStats"; # Command to run pswarp + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + &my_die("Unable to perform pswarp: $error_code", $warp_id, $skycell_id, $error_code); + } + &my_die("Couldn't find expected output file: $outputImage", $warp_id, $skycell_id, $tess_id, $PS_EXIT_SYS_ERROR) unless -f $outputImage; + &my_die("Couldn't find expected output file: $outputStats", $warp_id, $skycell_id, $tess_id, $PS_EXIT_SYS_ERROR) unless -f $outputStats; + &my_die("Couldn't find expected output file: $outputBin1", $warp_id, $skycell_id, $tess_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin1; + &my_die("Couldn't find expected output file: $outputBin2", $warp_id, $skycell_id, $tess_id, $PS_EXIT_SYS_ERROR) unless -f $outputBin2; + + # Get the statistics on the warped image + my $statsFile; # File handle + open $statsFile, "$outputStats" or die "Can't open statistics file $outputStats: $!\n"; + my @contents = <$statsFile>; # Contents of file + close $statsFile; + my $metadata = $mdcParser->parse(join "", @contents) + or &my_die("Unable to parse metadata config", $warp_id, $skycell_id, $tess_id, $PS_EXIT_PROG_ERROR); + $stats->parse($metadata) or &my_die("Unable to find all values in statistics output.", $warp_id, $skycell_id, $tess_id, $PS_EXIT_PROG_ERROR); +} + +# Take off the absolute path, to stuff into the database +$outputImage = $ipprc->convert_filename_relative( $outputImage ); +$outputRoot = $ipprc->convert_filename_relative( $outputRoot ); + +my $bg = ($stats->bg_mean() or 'NAN'); +my $bg_stdev = ($stats->bg_stdev() or 'NAN'); + +# Add the processed file to the database +unless ($no_update) { + my $command = "$warptool -addwarped -warp_id $warp_id -skycell_id $skycell_id -tess_id $tess_id" . + " -uri $outputImage"; # -path_base $outputRoot"; # Command to run dettool + $command .= " -bg $bg -bg_stdev $bg_stdev"; + $command .= " -dbname $dbname" if defined $dbname; + + my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) = + run(command => $command, verbose => 1); + unless ($success) { + $error_code = (($error_code >> 8) or $PS_EXIT_PROG_ERROR); + warn("Unable to perform warptool -addwarped: $error_code\n"); + exit($error_code); + } + + unlink $outputStats; +} + +sub my_die +{ + my $msg = shift; # Warning message on die + my $warp_id = shift; # Warp identifier + my $skycell_id = shift; # Skycell identifier + my $tess_id = shift; # Tesselation identifier + my $exit_code = shift; # Exit code to add + + warn($msg); + if ($warp_id and $skycell_id and $tess_id and not $no_update) { + my $command = "$warptool -addwarped -warp_id $warp_id -skycell_id $skycell_id -tess_id $tess_id -code $exit_code"; + $command .= " -dbname $dbname" if defined $dbname; + system ($command); + } + exit $exit_code; +} + +END { + my $status = $?; + system("sync") == 0 + or die "failed to execute sync: $!" ; + $? = $status; +} + +__END__ Index: /branches/rel-1-1/ippScripts/t/00_distribution.t =================================================================== --- /branches/rel-1-1/ippScripts/t/00_distribution.t (revision 12167) +++ /branches/rel-1-1/ippScripts/t/00_distribution.t (revision 12167) @@ -0,0 +1,25 @@ +#!/usr/bin/env perl + +# Copyright (C) 2005 Joshua Hoblitt +# +# $Id: 00_distribution.t,v 1.1 2007-01-30 01:52:16 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all ); + +use lib qw( ./lib ./t ); + +use Test::More; + +# example taken from Test::Distribution Pod + +BEGIN { + eval { + require Test::Distribution; + }; + if($@) { + plan skip_all => 'Test::Distribution not installed'; + } else { + import Test::Distribution; # not => qw( podcover ); + } +} Index: /branches/rel-1-1/ippTasks/.cvsignore =================================================================== --- /branches/rel-1-1/ippTasks/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippTasks/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +config.log +config.status +configure +install-sh +missing Index: /branches/rel-1-1/ippTasks/Makefile.am =================================================================== --- /branches/rel-1-1/ippTasks/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippTasks/Makefile.am (revision 12167) @@ -0,0 +1,29 @@ +task_files = \ + detrend.mkruns.pro \ + detrend.norm.pro \ + detrend.process.pro \ + detrend.reject.pro \ + detrend.resid.pro \ + detrend.stack.pro \ + mkdetrend.pro \ + pantasks.pro \ + register.pro \ + chip.pro \ + camera.pro \ + warp.pro \ + diff.pro \ + stack.pro \ + summit.copy.pro \ + testscript.pro + + +pantasksdir = $(datadir)/pantasks +ipptasksdir = $(pantasksdir)/modules +ipptasks_DATA = $(task_files) + +install-data-hook: + chmod 0755 $(panstasks) $(ipptasksdir) + +EXTRA_DIST = $(task_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippTasks/autogen.sh =================================================================== --- /branches/rel-1-1/ippTasks/autogen.sh (revision 12167) +++ /branches/rel-1-1/ippTasks/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ippTasks +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +#($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $LIBTOOlIZE installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" +# DIE=1 +#} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +#($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $AUTOHEADER installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" +# DIE=1 +#} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +#$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +#$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ippTasks/camera.pro =================================================================== --- /branches/rel-1-1/ippTasks/camera.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/camera.pro (revision 12167) @@ -0,0 +1,158 @@ +## this file contains the tasks for running the phase 3 stage +## these tasks use the book camPendingExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/camera +exec mkdir -p $LOGSUBDIR + +book init camPendingExp + +macro camera.status + book listbook camPendingExp +end + +macro camera.on + task camera.exp.load + active true + end + task camera.exp.run + active true + end +end + +macro camera.off + task camera.exp.load + active false + end + task camera.exp.run + active false + end +end + +# this variable will cycle through the known database names +$camera_DB = 0 + +# select images ready for camera analysis +# new entries are added to camPendingExp +# skip already-present entries +task camera.exp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout $LOGSUBDIR/camera.exp.log + stderr $LOGSUBDIR/camera.exp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command camtool -pendingexp -limit 20 + else + # save the DB name for the exit tasks + option $DB:$camera_DB + command camtool -pendingexp -limit 20 -dbname $DB:$camera_DB + $camera_DB ++ + if ($camera_DB >= $DB:n) set camera_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout camPendingExp -key exp_tag -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook camPendingExp + end + + # delete existing entries in the appropriate states + process_cleanup camPendingExp + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# run the cameraexposure script on pending images +task camera.exp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 10 + + task.exec + book npages camPendingExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in camPendingExp (state == NULL) + book getpage camPendingExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword camPendingExp $pageName state RUN + book getword camPendingExp $pageName camera -var CAMERA + book getword camPendingExp $pageName exp_tag -var EXP_TAG + book getword camPendingExp $pageName workdir -var WORKDIR + book getword camPendingExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host:(need to choose based on chips) + if ($parallel) + host anyhost + else + host local + end + + # output log from filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/cam.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command camera_exp.pl --exp_tag $EXP_TAG $ARGS + end + command camera_exp.pl --exp_tag $EXP_TAG --camera $CAMERA $ARGS + end + + # success + task.exit default + process_exit camPendingExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword camPendingExp $options:0 state TIMEOUT + end +end + +## XXX add a global path to output files Index: /branches/rel-1-1/ippTasks/chip.pro =================================================================== --- /branches/rel-1-1/ippTasks/chip.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/chip.pro (revision 12167) @@ -0,0 +1,163 @@ +## this file contains the tasks for running the phase 0 stage +## these tasks use the book chipPendingImfile + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/chip +exec mkdir -p $LOGSUBDIR + +book init chipPendingImfile + +macro chip.status + book listbook chipPendingImfile +end + +macro chip.reset + book init chipPendingImfile +end + +macro chip.on + task chip.imfile.load + active true + end + task chip.imfile.run + active true + end +end + +macro chip.off + task chip.imfile.load + active false + end + task chip.imfile.run + active false + end +end + +# this variable will cycle through the known database names +$chip_DB = 0 + +# select images ready for chip analysis +# new entries are added to chipPendingImfile +# skip already-present entries +task chip.imfile.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/chip.imfile.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command chiptool -pendingimfile -limit 20 + else + # save the DB name for the exit tasks + option $DB:$chip_DB + command chiptool -pendingimfile -limit 20 -dbname $DB:$chip_DB + $chip_DB ++ + if ($chip_DB >= $DB:n) set chip_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout chipPendingImfile -key exp_tag:class_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook chipPendingImfile + end + + # delete existing entries in the appropriate states + process_cleanup chipPendingImfile + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# run the chip_imfile.pl script on pending images +task chip.imfile.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 60 + + task.exec + book npages chipPendingImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in chipPendingImfile (state == NULL) + book getpage chipPendingImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword chipPendingImfile $pageName state RUN + book getword chipPendingImfile $pageName camera -var CAMERA + book getword chipPendingImfile $pageName exp_tag -var EXP_TAG + book getword chipPendingImfile $pageName workdir -var WORKDIR + book getword chipPendingImfile $pageName class_id -var CLASS_ID + book getword chipPendingImfile $pageName uri -var URI + book getword chipPendingImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + # XXX need to choose based on chips + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/chip.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command chip_imfile.pl --exp_tag $EXP_TAG --class_id $CLASS_ID --uri $URI --camera $CAMERA $ARGS + end + command chip_imfile.pl --exp_tag $EXP_TAG --class_id $CLASS_ID --uri $URI --camera $CAMERA $ARGS + end + + # default exit status + task.exit default + process_exit chipPendingImfile $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword chipPendingImfile $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/configure.ac =================================================================== --- /branches/rel-1-1/ippTasks/configure.ac (revision 12167) +++ /branches/rel-1-1/ippTasks/configure.ac (revision 12167) @@ -0,0 +1,14 @@ +AC_PREREQ(2.59) + +AC_INIT([ippTasks], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([pantasks.pro]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_MAINTAINER_MODE + +AC_PROG_INSTALL + +AC_CONFIG_FILES([ + Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/ippTasks/detrend.mkruns.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.mkruns.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.mkruns.pro (revision 12167) @@ -0,0 +1,97 @@ +## XXX this script needs to be updated to use books, not queues +## XXX this script needs to be reconsidered... + +## This script defines tasks which regularly initiate the detrend +## runs. Each detrend type is given its own task, which are run once +## (or twice) per day to build the relevant detrend data + +## when one of these tasks is run, it creates a new detrend run ID in +## the database, and selects the exposures for that run on the basis +## of the specified filters + +# create a new detrend bias-creation run +task mkdetruns.megacam + # command dettool -select -time NOW -24h -type bias -camera megacam + command mkdetruns.megacam + host local + + periods -poll 1 + periods -exec 60 + periods -timeout 30 + trange 18:00 19:00 -nmax 1 + + # success: a new detrend run was created + task.exit 0 + echo "new MEGACAM detrend runs" + queueprint stdout + end + + # default exit status + task.exit default + echo "unable to define a new detrend run" + end + + # operation timed out? is the database down? + task.exit timeout + # send someone email? + echo "unable to define a new detrend run" + end +end + +# create a new detrend bias-creation run +task mkdetruns.isp + # command dettool -select -time NOW -24h -type bias -camera megacam + command mkdetruns.isp + host local + + periods -poll 1 + periods -exec 60 + periods -timeout 30 + trange 18:00 19:00 -nmax 1 + + # success: a new detrend run was created + task.exit 0 + echo "new ISP detrend runs" + queueprint stdout + end + + # default exit status + task.exit default + echo "unable to define a new detrend run" + end + + # operation timed out? is the database down? + task.exit timeout + # send someone email? + echo "unable to define a new detrend run" + end +end + +# create a new detrend bias-creation run +task mkdetruns.gpc + # command dettool -select -time NOW -24h -type bias -camera megacam + command mkdetruns.gpc + host local + + periods -poll 1 + periods -exec 60 + periods -timeout 30 + trange 18:00 19:00 -nmax 1 + + # success: a new detrend run was created + task.exit 0 + echo "new GPC detrend runs" + queueprint stdout + end + + # default exit status + task.exit default + echo "unable to define a new detrend run" + end + + # operation timed out? is the database down? + task.exit timeout + # send someone email? + echo "unable to define a new detrend run" + end +end Index: /branches/rel-1-1/ippTasks/detrend.norm.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.norm.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.norm.pro (revision 12167) @@ -0,0 +1,420 @@ +## this file contains the tasks for running the detrend normalization stages +## these tasks use the books detPendingNormStatImfile detPendingNormImfile detPendingNormExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/detrend +exec mkdir -p $LOGSUBDIR + +book init detPendingNormStatImfile +book init detPendingNormImfile +book init detPendingNormExp + +macro detnorm.reset + book init detPendingNormStatImfile + book init detPendingNormImfile + book init detPendingNormExp +end + +macro detnorm.status + book listbook detPendingNormStatImfile + book listbook detPendingNormImfile + book listbook detPendingNormExp +end + +macro detnorm.on + task dettool.norm.load + active true + end + task dettool.norm.run + active true + end + task dettool.normexp.load + active true + end + task dettool.normexp.run + active true + end + task dettool.normstat.load + active true + end + task dettool.normstat.run + active true + end +end + +macro detnorm.off + task dettool.norm.load + active false + end + task dettool.norm.run + active false + end + task dettool.normexp.load + active false + end + task dettool.normexp.run + active false + end + task dettool.normstat.load + active false + end + task dettool.normstat.run + active false + end +end + +# these variables will cycle through the known database names +$detPendingNormStatImfile_DB = 0 +$detPendingNormImfile_DB = 0 +$detPendingNormExp_DB = 0 + +# select images ready for copy +# new entries are added to detPendingNormStatImfile +# compare the new list with the ones already selected +task dettool.normstat.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/dettool.normstat.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -tonormalizedstat -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingNormStatImfile_DB + command dettool -tonormalizedstat -limit 20 -dbname $DB:$detPendingNormStatImfile_DB + $detPendingNormStatImfile_DB ++ + if ($detPendingNormStatImfile_DB >= $DB:n) set detPendingNormStatImfile_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingNormStatImfile -key det_id:iteration -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingNormStatImfile + end + + # delete existing entries in the appropriate states + process_cleanup detPendingNormStatImfile + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.normstat.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingNormStatImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingNormStatImfile + book getpage detPendingNormStatImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingNormStatImfile $pageName state RUN + book getword detPendingNormStatImfile $pageName det_id -var DET_ID + book getword detPendingNormStatImfile $pageName det_type -var DET_TYPE + book getword detPendingNormStatImfile $pageName iteration -var ITERATION + book getword detPendingNormStatImfile $pageName camera -var CAMERA + book getword detPendingNormStatImfile $pageName workdir -var WORKDIR + book getword detPendingNormStatImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX add $WORKDIR/$LOG_DIR + # XXX use ipp_filename.pl to lookup output file names + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$CAMERA.$DET_TYPE.$DET_ID + $logfile = $outroot/norm.$DET_ID.$ITERATION.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_norm_calc.pl --det_id $DET_ID --iteration $ITERATION --det_type $DET_TYPE $ARGS + end + command detrend_norm_calc.pl --det_id $DET_ID --iteration $ITERATION --det_type $DET_TYPE $ARGS + end + + # default exit status + task.exit default + process_exit detPendingNormStatImfile $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingNormStatImfile $options:0 state TIMEOUT + end +end + +# select images ready for copy +# new entries are added to detPendingNormImfile +# compare the new list with the ones already selected +task dettool.norm.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/dettool.norm.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -tonormalize -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingNormImfile_DB + command dettool -tonormalize -limit 20 -dbname $DB:$detPendingNormImfile_DB + $detPendingNormImfile_DB ++ + if ($detPendingNormImfile_DB >= $DB:n) set detPendingNormImfile_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingNormImfile -key det_id:iteration -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingNormImfile + end + + # delete existing entries in the appropriate states + process_cleanup detPendingNormImfile + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.norm.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingNormImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingNormImfile + book getpage detPendingNormImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingNormImfile $pageName state RUN + book getword detPendingNormImfile $pageName det_type -var DET_TYPE + book getword detPendingNormImfile $pageName camera -var CAMERA + book getword detPendingNormImfile $pageName uri -var URI + book getword detPendingNormImfile $pageName det_id -var DET_ID + book getword detPendingNormImfile $pageName iteration -var ITERATION + book getword detPendingNormImfile $pageName class_id -var CLASS_ID + book getword detPendingNormImfile $pageName norm -var NORM + book getword detPendingNormImfile $pageName workdir -var WORKDIR + book getword detPendingNormImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX use ipp_filename.pl to lookup output file names + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$CAMERA.$DET_TYPE.$DET_ID + $logfile = $outroot/norm.$DET_ID.$ITERATION.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_norm_apply.pl --det_id $DET_ID --iteration $ITERATION --class_id $CLASS_ID --value $NORM --input_uri $URI --camera $CAMERA --det_type $DET_TYPE $ARGS + end + command detrend_norm_apply.pl --det_id $DET_ID --iteration $ITERATION --class_id $CLASS_ID --value $NORM --input_uri $URI --camera $CAMERA --det_type $DET_TYPE $ARGS + end + + # default exit status + task.exit default + process_exit detPendingNormImfile $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingNormImfile $options:0 state TIMEOUT + end +end + +# select images ready for copy +# new entries are added to detPendingNormExp +# compare the new list with the ones already selected +task dettool.normexp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/dettool.normexp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -tonormalizedexp -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingNormExp_DB + command dettool -tonormalizedexp -limit 20 -dbname $DB:$detPendingNormExp_DB + $detPendingNormExp_DB ++ + if ($detPendingNormExp_DB >= $DB:n) set detPendingNormExp_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingNormExp -key det_id:iteration -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingNormExp + end + + # delete existing entries in the appropriate states + process_cleanup detPendingNormExp + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.normexp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingNormExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingNormExp + book getpage detPendingNormExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingNormExp $pageName state RUN + book getword detPendingNormExp $pageName det_id -var DET_ID + book getword detPendingNormExp $pageName iteration -var ITERATION + book getword detPendingNormExp $pageName det_type -var DET_TYPE + book getword detPendingNormExp $pageName camera -var CAMERA + book getword detPendingNormExp $pageName workdir -var WORKDIR + book getword detPendingNormExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX add $WORKDIR/$LOG_DIR + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$CAMERA.$DET_TYPE.$DET_ID + $logfile = $outroot/norm.$DET_ID.$ITERATION.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_norm_exp.pl --det_id $DET_ID --iteration $ITERATION --camera $CAMERA --det_type $DET_TYPE $ARGS + end + command detrend_norm_exp.pl --det_id $DET_ID --iteration $ITERATION --camera $CAMERA --det_type $DET_TYPE $ARGS + end + + # default exit status + task.exit default + process_exit detPendingNormExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingNormExp $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/detrend.process.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.process.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.process.pro (revision 12167) @@ -0,0 +1,297 @@ +## this file contains the tasks for running the detrend processing stage +## these tasks use the books detPendingProcessedImfile and detPendingProcessedExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/detrend +exec mkdir -p $LOGSUBDIR + +book init detPendingProcessedImfile +book init detPendingProcessedExp + +macro detproc.reset + book init detPendingProcessedImfile + book init detPendingProcessedExp +end + +macro detproc.status + echo detPendingProcessedImfile + book listbook detPendingProcessedImfile + echo detPendingProcessedExp + book listbook detPendingProcessedExp +end + +macro detproc.on + task dettool.process.load + active true + end + task dettool.process.run + active true + end + task dettool.processexp.load + active true + end + task dettool.processexp.run + active true + end +end + +macro detproc.off + task dettool.process.load + active false + end + task dettool.process.run + active false + end + task dettool.processexp.load + active false + end + task dettool.processexp.run + active false + end +end + + +# these variables will cycle through the known database names +$detPendingProcessedImfile_DB = 0 +$detPendingProcessedExp_DB = 0 + +# select images ready for copy +# new entries are added to detPendingProcessedImfile +# compare the new list with the ones already selected +task dettool.process.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/detproc.imfile.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -toprocessedimfile -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingProcessedImfile_DB + command dettool -toprocessedimfile -limit 20 -dbname $DB:$detPendingProcessedImfile_DB + $detPendingProcessedImfile_DB ++ + if ($detPendingProcessedImfile_DB >= $DB:n) set detPendingProcessedImfile_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingProcessedImfile -key det_id:exp_tag:class_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingProcessedImfile + end + + # delete existing entries in the appropriate states + process_cleanup detPendingProcessedImfile + end + + # error + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand + end +end + +# run detrend_process_imfile.ps on pending images +task dettool.process.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingProcessedImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingProcessedImfile + book getpage detPendingProcessedImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingProcessedImfile $pageName state RUN + book getword detPendingProcessedImfile $pageName det_id -var DET_ID + book getword detPendingProcessedImfile $pageName det_type -var DET_TYPE + book getword detPendingProcessedImfile $pageName exp_tag -var EXP_TAG + book getword detPendingProcessedImfile $pageName class -var CLASS + book getword detPendingProcessedImfile $pageName class_id -var CLASS_ID + book getword detPendingProcessedImfile $pageName uri -var URI + book getword detPendingProcessedImfile $pageName camera -var CAMERA + book getword detPendingProcessedImfile $pageName workdir -var WORKDIR + book getword detPendingProcessedImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + ## output log filename + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/detproc.$DET_ID.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_process_imfile.pl --det_id $DET_ID --det_type $DET_TYPE --exp_tag $EXP_TAG --class $CLASS --class_id $CLASS_ID --input_uri $URI --camera $CAMERA $ARGS + end + command detrend_process_imfile.pl --det_id $DET_ID --det_type $DET_TYPE --exp_tag $EXP_TAG --class $CLASS --class_id $CLASS_ID --input_uri $URI --camera $CAMERA $ARGS + end + + # default exit status + task.exit default + process_exit detPendingProcessedImfile $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingProcessedImfile $options:0 state TIMEOUT + end +end + +# select images ready for copy +# new entries are added to detPendingProcessedExp +# compare the new list with the ones already selected +task dettool.processexp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/detproc.exp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -toprocessedexp -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingProcessedExp_DB + command dettool -toprocessedexp -limit 20 -dbname $DB:$detPendingProcessedExp_DB + $detPendingProcessedExp_DB ++ + if ($detPendingProcessedExp_DB >= $DB:n) set detPendingProcessedExp_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingProcessedExp -key det_id:iteration:exp_tag -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingProcessedExp + end + + # delete existing entries in the appropriate states + process_cleanup detPendingProcessedExp + end + + # error + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.processexp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingProcessedExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new exposures in detPendingProcessedExp + book getpage detPendingProcessedExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + # XXX is ITERATION relevant here?? + book setword detPendingProcessedExp $pageName state RUN + book getword detPendingProcessedExp $pageName det_id -var DET_ID + book getword detPendingProcessedExp $pageName iteration -var ITERATION + book getword detPendingProcessedExp $pageName det_type -var DET_TYPE + book getword detPendingProcessedExp $pageName exp_tag -var EXP_TAG + book getword detPendingProcessedExp $pageName camera -var CAMERA + book getword detPendingProcessedExp $pageName workdir -var WORKDIR + book getword detPendingProcessedExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX push this into the filerules? + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/detproc.$DET_ID.$ITERATION.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_process_exp.pl --det_id $DET_ID --exp_tag $EXP_TAG --camera $CAMERA $ARGS + end + command detrend_process_exp.pl --det_id $DET_ID --exp_tag $EXP_TAG --camera $CAMERA $ARGS + end + + # success + task.exit default + process_exit detPendingProcessedExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingProcessedExp $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/detrend.reject.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.reject.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.reject.pro (revision 12167) @@ -0,0 +1,163 @@ +## this file contains the tasks for running the detrend processing stage +## these tasks use the book detRejectExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/detrend +exec mkdir -p $LOGSUBDIR + +book init detRejectExp + +macro detreject.reset + book init detRejectExp +end + +macro detreject.status + book listbook detRejectExp +end + +macro detreject.on + task dettool.reject.load + active true + end + task dettool.reject.run + active true + end +end + +macro detreject.off + task dettool.reject.load + active false + end + task dettool.reject.run + active false + end +end + +# this variable will cycle through the known database names +$detRejectExp_DB = 0 + +# select images ready for copy +# new entries are added to detRejectExp +# compare the new list with the ones already selected +task dettool.reject.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/dettool.reject.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -residdetrun -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detRejectExp_DB + command dettool -residdetrun -limit 20 -dbname $DB:$detRejectExp_DB + $detRejectExp_DB ++ + if ($detRejectExp_DB >= $DB:n) set detRejectExp_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detRejectExp -key det_id:iteration -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detRejectExp + end + + # delete existing entries in the appropriate states + process_cleanup detRejectExp + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand failure + end +end + +# copy new images, sending job to desired host +task dettool.reject.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detRejectExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detRejectExp + book getpage detRejectExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detRejectExp $pageName state RUN + book getword detRejectExp $pageName det_id -var DET_ID + book getword detRejectExp $pageName iteration -var ITERATION + book getword detRejectExp $pageName det_type -var DET_TYPE + book getword detRejectExp $pageName mode -var MODE + book getword detRejectExp $pageName camera -var CAMERA + book getword detRejectExp $pageName workdir -var WORKDIR + book getword detRejectExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # I'd like to add CAMERA to the log file... + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$CAMERA.$DET_TYPE.$DET_ID + $logfile = $outroot/reject.$DET_ID.$ITERATION.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_reject_exp.pl --det_id $DET_ID --iteration $ITERATION --det_type $DET_TYPE --camera $CAMERA $ARGS + end + command detrend_reject_exp.pl --det_id $DET_ID --iteration $ITERATION --det_type $DET_TYPE --camera $CAMERA $ARGS + end + + # default exit status + task.exit default + process_exit detRejectExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand failure + book setword detRejectExp $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/detrend.resid.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.resid.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.resid.pro (revision 12167) @@ -0,0 +1,297 @@ +## this file contains the tasks for running the detrend processing stage +## these tasks use the books detPendingResidImfile and detPendingResidExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/detrend +exec mkdir -p $LOGSUBDIR + +book init detPendingResidImfile +book init detPendingResidExp + +macro detresid.reset + book init detPendingResidImfile + book init detPendingResidExp +end + +macro detresid.status + book listbook detPendingResidImfile + book listbook detPendingResidExp +end + +macro detresid.on + task dettool.resid.load + active true + end + task dettool.resid.run + active true + end + task dettool.residexp.load + active true + end + task dettool.residexp.run + active true + end +end + +macro detresid.off + task dettool.resid.load + active false + end + task dettool.resid.run + active false + end + task dettool.residexp.load + active false + end + task dettool.residexp.run + active false + end +end + +# these variables will cycle through the known database names +$detPendingResidImfile_DB = 0 +$detPendingResidExp_DB = 0 + +# select images ready for copy +# new entries are added to detPendingResidImfile +# compare the new list with the ones already selected +task dettool.resid.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/detresid.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -toresidimfile -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingResidImfile_DB + command dettool -toresidimfile -limit 20 -dbname $DB:$detPendingResidImfile_DB + $detPendingResidImfile_DB ++ + if ($detPendingResidImfile_DB >= $DB:n) set detPendingResidImfile_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingResidImfile -key det_id:iteration:exp_tag:class_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingResidImfile + end + + # delete existing entries in the appropriate states + process_cleanup detPendingResidImfile + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.resid.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingResidImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingResidImfile + book getpage detPendingResidImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingResidImfile $pageName state RUN + book getword detPendingResidImfile $pageName det_id -var DET_ID + book getword detPendingResidImfile $pageName iteration -var ITERATION + book getword detPendingResidImfile $pageName det_type -var DET_TYPE + book getword detPendingResidImfile $pageName mode -var MODE + book getword detPendingResidImfile $pageName exp_tag -var EXP_TAG + book getword detPendingResidImfile $pageName class_id -var CLASS_ID + book getword detPendingResidImfile $pageName uri -var URI + book getword detPendingResidImfile $pageName det_uri -var DET_URI + book getword detPendingResidImfile $pageName camera -var CAMERA + book getword detPendingResidImfile $pageName workdir -var WORKDIR + book getword detPendingResidImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX use ipp_filename.pl to lookup output file names + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/detresid.$DET_ID.$ITERATION.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create command + if ($VERBOSE > 1) + echo command detrend_resid.pl --det_id $DET_ID --iteration $ITERATION --exp_tag $EXP_TAG --class_id $CLASS_ID --det_type $DET_TYPE --detrend $DET_URI --input_uri $URI --camera $CAMERA --mode $MODE $ARGS + end + command detrend_resid.pl --det_id $DET_ID --iteration $ITERATION --exp_tag $EXP_TAG --class_id $CLASS_ID --det_type $DET_TYPE --detrend $DET_URI --input_uri $URI --camera $CAMERA --mode $MODE $ARGS + end + + # default exit status + task.exit default + process_exit detPendingResidImfile $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingResidImfile $options:0 state TIMEOUT + end +end + +# select images ready for copy +# new entries are added to detPendingResidExp +# compare the new list with the ones already selected +task dettool.residexp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/detresid.exp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -toresidexp -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingResidExp_DB + command dettool -toresidexp -limit 20 -dbname $DB:$detPendingResidExp_DB + $detPendingResidExp_DB ++ + if ($detPendingResidExp_DB >= $DB:n) set detPendingResidExp_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingResidExp -key det_id:iteration:exp_tag -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingResidExp + end + + # delete existing entries in the appropriate states + process_cleanup detPendingResidExp + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.residexp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages detPendingResidExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingResidExp + book getpage detPendingResidExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingResidExp $pageName state RUN + book getword detPendingResidExp $pageName det_id -var DET_ID + book getword detPendingResidExp $pageName iteration -var ITERATION + book getword detPendingResidExp $pageName det_type -var DET_TYPE + book getword detPendingResidExp $pageName mode -var MODE + book getword detPendingResidExp $pageName exp_tag -var EXP_TAG + book getword detPendingResidExp $pageName include -var INCLUDE + book getword detPendingResidExp $pageName camera -var CAMERA + book getword detPendingResidExp $pageName workdir -var WORKDIR + book getword detPendingResidExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX use ipp_filename.pl to lookup output file names + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/detresid.$DET_ID.$ITERATION.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create example job options as a demonstration + if ($VERBOSE > 1) + echo command detrend_reject_imfile.pl --det_id $DET_ID --iteration $ITERATION --exp_tag $EXP_TAG --det_type $DET_TYPE --camera $CAMERA $ARGS + end + command detrend_reject_imfile.pl --det_id $DET_ID --iteration $ITERATION --exp_tag $EXP_TAG --det_type $DET_TYPE --camera $CAMERA $ARGS + end + + # default exit status + task.exit default + process_exit detPendingResidExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingResidExp $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/detrend.stack.pro =================================================================== --- /branches/rel-1-1/ippTasks/detrend.stack.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/detrend.stack.pro (revision 12167) @@ -0,0 +1,165 @@ +## this file contains the tasks for running the detrend stacking stage +## these tasks use the book detPendingStackedImfile + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/detrend +exec mkdir -p $LOGSUBDIR + +book init detPendingStackedImfile + +macro detstack.reset + book init detPendingStackedImfile +end + +macro detstack.status + echo detPendingStackedImfile + book listbook detPendingStackedImfile +end + +macro detstack.on + task dettool.stack.load + active true + end + task dettool.stack.run + active true + end +end + +macro detstack.off + task dettool.stack.load + active false + end + task dettool.stack.run + active false + end +end + +# this variable will cycle through the known database names +$detPendingStackedImfile_DB = 0 + +# select images ready for detrend_stack.pl +# new entries are added to detPendingStackedImfile +# compare the new list with the ones already selected +task dettool.stack.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/detstack.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command dettool -tostacked -limit 20 + else + # save the DB name for the exit tasks + option $DB:$detPendingStackedImfile_DB + command dettool -tostacked -limit 20 -dbname $DB:$detPendingStackedImfile_DB + $detPendingStackedImfile_DB ++ + if ($detPendingStackedImfile_DB >= $DB:n) set detPendingStackedImfile_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout detPendingStackedImfile -key det_id:iteration:class_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook detPendingStackedImfile + end + + # delete existing entries in the appropriate states + process_cleanup detPendingStackedImfile + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# copy new images, sending job to desired host +task dettool.stack.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 120 + + task.exec + book npages detPendingStackedImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in detPendingStackedImfile + book getpage detPendingStackedImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword detPendingStackedImfile $pageName state RUN + book getword detPendingStackedImfile $pageName det_id -var DET_ID + book getword detPendingStackedImfile $pageName iteration -var ITERATION + book getword detPendingStackedImfile $pageName det_type -var DET_TYPE + book getword detPendingStackedImfile $pageName class_id -var CLASS_ID + book getword detPendingStackedImfile $pageName camera -var CAMERA + book getword detPendingStackedImfile $pageName workdir -var WORKDIR + book getword detPendingStackedImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host: + if ($parallel) + host anyhost + else + host local + end + + # XXX add $WORKDIR/$LOG_DIR + # XXX use ipp_filename.pl to lookup output file names + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$CAMERA.$DET_TYPE.$DET_ID + $logfile = $outroot/detstack.$DET_ID.$ITERATION.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command detrend_stack.pl --det_id $DET_ID --iteration $ITERATION --class_id $CLASS_ID --det_type $DET_TYPE --camera $CAMERA $ARGS + end + command detrend_stack.pl --det_id $DET_ID --iteration $ITERATION --class_id $CLASS_ID --det_type $DET_TYPE --camera $CAMERA $ARGS + end + + # default exit status + task.exit default + process_exit detPendingStackedImfile $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword detPendingStackedImfile $options:0 state TIMEOUT + end +end Index: /branches/rel-1-1/ippTasks/diff.pro =================================================================== --- /branches/rel-1-1/ippTasks/diff.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/diff.pro (revision 12167) @@ -0,0 +1,171 @@ +### This file contains panTasks definitions for performing the image differencing. + +### After a difference (with associated diff_id) is defined, the difference is performed +### (tasks in diffSkyfile). + + +### Setups +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/diff +exec mkdir -p $LOGSUBDIR + +### Initialise the books containing the tasks to do +book init diffSkyfile + +### Database lists +$diffSkycell_DB = 0 + +### Check status of diffing tasks +macro diff.status + book listbook diffSkyfile +end + +### Reset diffing tasks +macro diff.reset + book init diffSkyfile +end + +### Turn diffing tasks on +macro diff.on + task diff.skycell.load + active true + end + task diff.skycell.run + active true + end +end + +### Turn diffing tasks off +macro diff.off + task diff.skycell.load + active false + end + task diff.skycell.run + active false + end +end + + +### Load tasks for doing the differences +### Tasks are loaded into diffSkyfile. +task diff.skycell.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/diff.skycell.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command difftool -todiffed -limit 20 + else + # save the DB name for the exit tasks + option $DB:$diffSkycell_DB + command difftool -todiffskyfile -limit 20 -dbname $DB:$diffSkycell_DB + $diffSkycell_DB ++ + if ($diffSkycell_DB >= $DB:n) set diffSkycell_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout diffSkyfile -key diff_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook diffSkyfile + end + + # delete existing entries in the appropriate states + process_cleanup diffSkyfile + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +### Run tasks for calculating the diff overlaps +### Tasks are taken from diffSkyfile. +task diff.skycell.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 60 + + task.exec + book npages diffSkyfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in diffSkyfile (state == NULL) + book getpage diffSkyfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword diffSkyfile $pageName state RUN + book getword diffSkyfile $pageName diff_id -var DIFF_ID + book getword diffSkyfile $pageName workdir -var WORKDIR + book getword diffSkyfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + # XXX need to choose based on diffs + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/diff$DIFF_ID + $logfile = $outroot/skycell.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command diff_skycell.pl --diff_id $DIFF_ID --workdir $WORKDIR $ARGS + end + command diff_skycell.pl --diff_id $DIFF_ID --workdir $WORKDIR $ARGS + end + + # default exit status + task.exit default + process_exit diffSkyfile $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword diffSkyfile $options:0 state TIMEOUT + end +end + Index: /branches/rel-1-1/ippTasks/mkdetrend.pro =================================================================== --- /branches/rel-1-1/ippTasks/mkdetrend.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/mkdetrend.pro (revision 12167) @@ -0,0 +1,8 @@ + +input detrend.mkruns.pro +input detrend.process.pro +input detrend.stack.pro +input detrend.norm.pro +input detrend.resid.pro +input detrend.assess.pro + Index: /branches/rel-1-1/ippTasks/notes.txt =================================================================== --- /branches/rel-1-1/ippTasks/notes.txt (revision 12167) +++ /branches/rel-1-1/ippTasks/notes.txt (revision 12167) @@ -0,0 +1,192 @@ + +2007.01.08 + + I have updated pantasks to used named tags in named groups to make + life much easier when changing the schema of the db tables. The + function ipptool2book convernts the output from an ippTool query in + the form of a set of metadata structures (saved in stdout) into a + book format. + + dettool -tonormalizedstat DetrendNormStat + dettool -tonormalize DetrendNorm + dettool -tonormalizedexp DetrendNormExp + dettool -toprocessedimfile DetrendProcessImfiles + dettool -toprocessedexp DetrendProcessExposures + dettool -residdetrun DetrendRejectExp + dettool -toresidimfile DetrendResidImfiles + dettool -toresidexp DetrendResidExposures + dettool -tostacked DetrendStackClass + p0tool -pendingimfile Phase0Imfiles + p0tool -pendingexp Phase0Exposures + p2tool -pendingimfile Phase2Imfiles + p3tool -pendingexp Phase3Exposures + +2006.08.28 + +- ipptools need to use expID:camera:telescope as unique key (ie, not expID alone) +- p0tool -pendingimfile -simple needs to report the expKey (ie, not expID) +- + + +This directory contains the PanTasks scripts which define the steps +performed by the IPP. These scripts use the ippTools to decide what +images need to be processed, and to update the Metadata Database with +the current state of the analysis. The analysis is performed using +IPP programs which are distributed to the cluster computers as needed. + +1. The Detrend Creation Scripts + +The detrend creation process is among the more complex elements of the +IPP. There are N major steps which must be performed: + +1.1. Define New Detrend Runs + +The script 'detrend.mkruns.pro' defines tasks which initiate new +Detrend Runs. There is a separate task for each camera automatically +processed by the system (mkdetruns.CAMERA). These tasks are executed +on a regular, but infrequent basis. The tasks call external helper +programs which actually run the command dettools -define. The helper +programs are thus responsible for identifying all of the types of +detrend images to be run for a given camera, as well as the correct +set of filters to apply. These tasks are run locally and only affect +the database. PanTasks does not track the detrend runs which are +created. + +- we may need to define these within the PanTasks scripts +- how frequently are these tasks run (1/day?) +- if no raw images are selected by the query, no new detrun should be + created. +- we may need different schedules for the dark (bias/dark) and the + light (flat/fringe) data. And yet another schedule for sky data + (skyflat/skyfringe). + +1.2. Process new raw imfiles + +The script 'detrend.process.pro' defines tasks which processes the new +raw imfiles for any detrend run. This script defines two tasks, +'dettool.raw.load' and 'dettool.raw.process'. The first script +occasionally polls the Metadata Database to select raw imfiles which +have been identified as part of a detrend run. The identified raw +imfiles are added to an internal queue, DetrendImfilesToProcess. Any +raw imfile already in the list is ignored. The imfiles are added to +the queue with a state of NEW. The second task examines the queue for +imfiles with state NEW and defines a ppImage analysis job for that +imfile. The job is sent to pcontrol for processing on the distributed +cluster. At this point, the corresponding queue entry is set to the +state RUN. Upon success, the queue entry is set to DONE and the +database is notified of the successful operation. The DONE entries +are occasionally pruned from the queue; this must be done in the same +task as the initial query and the update of the list based on the +database results. + +- we need to define the columns in the output of dettool -raw +- we need a method to associate an imfile with a node in the cluster +- we need to perform some appropriate action when the queries fail. +- we need a method to generate the output URIs +- we need a method to identify the correct recipe (function of type?) + +1.3. Stack new processed imfiles + +The script 'detrend.stack.pro' defines tasks which stack the newly +processed imfiles for any detrend run iteration. This script defines +two tasks, 'dettool.stack.load and 'dettool.stack.process. The first +script occasionally polls the Metadata Database to select class IDs +for detrend runs for which the input imfiles have all been processed. +The identified detRun/classID combination is added to an internal +queue, DetrendClassIDtoStack. The entries are added to the queue with +a state of NEW. The second task examines the queue for entries with a +state of NEW. It defines a ppMerge analysis job for that +detID/classID. The helper script selects the corresponding input +imfiles and passes them to ppMerge. The job is sent to pcontrol for +processing on the distributed cluster. At this point, the +corresponding queue entry is set to the state RUN. Upon success, the +queue entry is set to DONE and the database is notified of the +successful operation. The DONE entries are occasionally pruned from +the queue; this must be done in the same task as the initial query and +the update of the list based on the database results. + +- we need to define the columns in the output of dettool -chip -processed +- we need a method to associate a classID with a node in the cluster +- we need to perform some appropriate action when the queries fail. +- we need a method to generate the output URIs (not a function of the imfiles...) +- we need a method to identify the correct recipe (function of type?) + + +1.4. Normalize stacked masters + +The script 'detrend.norm.pro' defines tasks which normalize the newly +processed stacks for any detrend run iteration. This script defines +two tasks, 'dettool.norm.load and 'dettool.norm.process. The first +script occasionally polls the Metadata Database to select detrun IDs +for which the classes have all been stacked. The identified +detRunID/iteration combination is added to an internal queue, +DetrendRunToNormalize. The entries are added to the queue with a +state of NEW. The second task examines the queue for entries with a +state of NEW. It defines a ppNorm analysis job for that +detID/iteration. The job is sent to pcontrol for processing on the +distributed cluster. At this point, the corresponding queue entry is +set to the state RUN. Upon success, the queue entry is set to DONE and +the database is notified of the successful operation. The DONE +entries are occasionally pruned from the queue; this must be done in +the same task as the initial query and the update of the list based on +the database results. + +- we need to define the columns in the output of dettool +- we need to perform some appropriate action when the queries fail. +- we need a method to generate the output URIs (not a function of the imfiles...) +- we need a method to identify the correct recipe (function of type?) +- we need to define the ppNorm operation inputs and outputs better + + +1.5. Generate Resid Imfiles + +The script 'detrend.resid.pro' defines tasks which apply the newly +generated detrend image to the corresponding input images to generate +the residual images. This script defines two tasks, +'dettool.resid.load and 'dettool.resid.process. The first script +occasionally polls the Metadata Database to select imfiles for which +the master detrend images has been normalized. The identified imfiles +are added to an internal queue, DetrendResidImfiles. The entries are +added to the queue with a state of NEW. The second task examines the +queue for entries with a state of NEW. It defines a ppImage analysis +job for that imfile. The job is sent to pcontrol for processing on +the distributed cluster. At this point, the corresponding queue entry +is set to the state RUN. Upon success, the queue entry is set to DONE +and the database is notified of the successful operation. The DONE +entries are occasionally pruned from the queue; this must be done in +the same task as the initial query and the update of the list based on +the database results. + +- we need to define the columns in the output of dettool +- can we select the imfiles here without apriori knowledge that the + master has been normalized? +- we need to perform some appropriate action when the queries fail. +- we need a method to generate the output URIs (not a function of the imfiles...) +- we need a method to identify the correct recipe (function of type?) +- we need a method to pass the matching detrend image to ppImage in + the correct context (ie, a bias needs to be supplied to the -bias element...) + +1.6. Assess Detrend Results + +The script 'detrend.assess.pro' defines tasks which assess the +residual statistics for completed detrend runs. This script defines +two tasks, 'dettool.assess.load and 'dettool.assess.process. The +first script occasionally polls the Metadata Database to select +detrunIDs/iterations for which the resid imfiles have all been +generated. The identified detruns are added to an internal queue, +DetrendRunToAssess. The entries are added to the queue with a state +of NEW. The second task examines the queue for entries with a state +of NEW. It defines an analysis job for that collection. The job is +sent to pcontrol for processing on the distributed cluster. At this +point, the corresponding queue entry is set to the state RUN. Upon +success, the queue entry is set to DONE and the database is notified +of the successful operation. The DONE entries are occasionally pruned +from the queue; this must be done in the same task as the initial +query and the update of the list based on the database results. + +- the assess tool needs to trigger a new run, if needed. +- what is the command to run on the resid statistics? +- we need to define the columns in the output of dettool +- can we select the detrend runs here? +- we need to perform some appropriate action when the queries fail. +- we need a method to generate the output URIs (not a function of the imfiles...) Index: /branches/rel-1-1/ippTasks/pantasks.pro =================================================================== --- /branches/rel-1-1/ippTasks/pantasks.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/pantasks.pro (revision 12167) @@ -0,0 +1,258 @@ + +# XXX make these upper-case +$network = 1 +$parallel = 1 +$VERBOSE = 1 +$LOGDIR = `pwd` +$scripts = . + +$loadpoll = 1 +$loadexec = 5 +$runpoll = 0.5 +$runexec = 1 + +$EXIT_SUCCESS = 0 +$EXIT_UNKNOWN_ERR = 1 +$EXIT_SYS_ERR = 2 +$EXIT_CONFIG_ERR = 3 +$EXIT_PROG_ERR = 4 +$EXIT_DATA_ERR = 5 + +# DB lists the database names in use; the default ipprc database +# is only used if DB:n is 0 +$DB:n = 0 + +macro init.cluster.po + $parallel = 1 + controller exit true + + # po05 -- using for pantasks + # po23 -- broken perl + + controller host add po02 + controller host add po03 + controller host add po04 +# controller host add po05 + controller host add po06 + controller host add po07 +# controller host add po08 +# controller host add po09 +# controller host add po10 +# controller host add po11 +# controller host add po12 +# controller host add po13 +# controller host add po14 +# controller host add po15 +# controller host add po16 +# controller host add po17 +# controller host add po18 +# controller host add po19 +# controller host add po20 +# controller host add po21 +# controller host add po22 +# controller host add po23 +# controller host add po24 +end + +macro init.cluster.sn + $parallel = 1 + controller exit true + controller host add sn2 + controller host add sn3 + controller host add sn4 + controller host add sn5 +end + +macro init.isp + list DB -add isp +end + +macro init.essence + list DB -add essence_v2 +end + +macro init.simtest.local + list DB -add simtest + $parallel = 0 + controller exit true +end + +macro init.simtest.default.db + $host = `hostname` + if ($parallel) + controller exit true + controller host add $host + end +end + +macro init.simtest + list DB -add simtest + + $host = `hostname` + if ($parallel) + controller exit true + controller host add $host + end +end + +# need the ability to activate or deactivate specific tasks... + +macro detrend.on + detproc.on + detstack.on + detnorm.on + detresid.on + detreject.on +end + +macro detrend.off + detproc.off + detstack.off + detnorm.off + detresid.off + detreject.off +end + +macro detrend.reset + detproc.reset + detstack.reset + detnorm.reset + detresid.reset + detreject.reset +end + + +macro module.tasks + module register.pro +# module $scripts/chip.pro +# module $scripts/camera.pro + module detrend.process.pro + module detrend.stack.pro + module detrend.norm.pro + module detrend.resid.pro + module detrend.reject.pro + module warp.pro + module diff.pro + module stack.pro +end + +macro showcommand + local n + + if ($VERBOSE) + $command = $taskarg:0 + for n 1 $taskarg:n + $command = $command $taskarg:$n + end + if ($0 == 2) + echo "$1 for: $command" + echo "job exit status: $JOB_STATUS" + echo "job dtime: $JOB_DTIME" + else + echo "command: $command" + end + end +end + +macro set_standard_args + # XXX be careful: $ARGS cannot be resolved as "" + # XXX currently, sprintf is the only good way of creating + # an empty variable + if ($?WORKDIR == 0) + echo error in pantasks: WORKDIR not set + stop + end + if ($?DBNAME == 0) + echo error in pantasks: DBNAME not set + stop + end + if ("$DBNAME" != "DEFAULT") + $ARGS = --workdir $WORKDIR --dbname $DBNAME + else + $ARGS = --workdir $WORKDIR + end +end + +macro process_exit + if ($0 != 4) + echo "USAGE: process_exit (bookName) (pageName) (exitCode)" + break + end + + $bookName = $1 + $pageName = $2 + $exitCode = $3 + + if ($VERBOSE > 4) + echo "*** stdout ***" + queueprint stdout + echo "*** stderr ***" + queueprint stderr + echo "JOB_STATUS: $JOB_STATUS" + end + + # success + if ($exitCode == $EXIT_SUCCESS) + # the handler scripts update DB the tables; here we just update the page + book setword $bookName $pageName state DONE + return + end + + # failure related to the data files + # jobs which result in DATAERR must have db state updated + if ($exitCode == $EXIT_DATA_ERR) + showcommand failure + book setword $bookName $pageName state DATA_ERR + return + end + + if ($VERBOSE) + echo "*** stdout ***" + queueprint stdout + echo "*** stderr ***" + queueprint stderr + end + + # failure related to the data files + if ($exitCode == $EXIT_SYS_ERR) + # stop + showcommand "system failure" + book setword $bookName $pageName state SYS_ERR + return + end + + # failure related to the data files + if ($exitCode == $EXIT_CONFIG_ERR) + # stop + showcommand "config error" + book setword $bookName $pageName state CONFIG_ERR + return + end + + # failure related to the data files + if ($exitCode == $EXIT_PROG_ERR) + # stop + showcommand "programming error" + book setword $bookName $pageName state PROG_ERR + return + end + + # any other exit status + showcommand failure + book setword $bookName $pageName state UNKNOWN_ERR +end + +## XXX for the moment, remove all errors +macro process_cleanup + if ($0 != 2) + echo "USAGE: process_cleanup (bookname)" + break + end + + book delpage $1 -key state DONE + book delpage $1 -key state SYS_ERR + book delpage $1 -key state DATA_ERR + book delpage $1 -key state PROG_ERR + book delpage $1 -key state CONFIG_ERR + book delpage $1 -key state UNKNOWN_ERR +end Index: /branches/rel-1-1/ippTasks/register.pro =================================================================== --- /branches/rel-1-1/ippTasks/register.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/register.pro (revision 12167) @@ -0,0 +1,289 @@ +## this file contains the tasks for running the registration stage +## these tasks use the books regPendingImfile and regPendingExp + +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/register +exec mkdir -p $LOGSUBDIR + +book init regPendingImfile +book init regPendingExp + +macro register.reset + book init regPendingImfile + book init regPendingExp +end + +macro register.status + book listbook regPendingImfile + book listbook regPendingExp +end + +macro register.on + task register.imfile.load + active true + end + task register.imfile.run + active true + end + task register.exp.load + active true + end + task register.exp.run + active true + end +end + +macro register.off + task register.imfile.load + active false + end + task register.imfile.run + active false + end + task register.exp.load + active false + end + task register.exp.run + active false + end +end + +# these variables will cycle through the known database names +$regPendingImfile_DB = 0 +$regPendingExp_DB = 0 + +# select images ready for register analysis +# new entries are added to regPendingImfile +# compare the new list with the ones already selected +task register.imfile.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + # silently drop stdout + stdout NULL + stderr $LOGSUBDIR/register.imfile.log + + # select entries from the current DB; cycle to the next DB, if it exists + # iff the DB list is not set, use the value defined in .ipprc + task.exec + if ($DB:n == 0) + option DEFAULT + command regtool -pendingimfile -limit 20 + else + # save the DB name for the exit tasks + option $DB:$regPendingImfile_DB + command regtool -pendingimfile -limit 20 -dbname $DB:$regPendingImfile_DB + $regPendingImfile_DB ++ + if ($regPendingImfile_DB >= $DB:n) set regPendingImfile_DB = 0 + end + end + + # success + task.exit $EXIT_SUCCESS + # convert 'stdout' to book format + ipptool2book stdout regPendingImfile -key exp_tag -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook regPendingImfile + end + + # delete existing entries in the appropriate states + process_cleanup regPendingImfile + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# run the register_imfile.pl script on pending images +task register.imfile.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages regPendingImfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in regPendingImfile + book getpage regPendingImfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword regPendingImfile $pageName state RUN + + book getword regPendingImfile $pageName exp_tag -var EXP_TAG + book getword regPendingImfile $pageName class -var CLASS + book getword regPendingImfile $pageName class_id -var CLASS_ID + book getword regPendingImfile $pageName uri -var URI + book getword regPendingImfile $pageName workdir -var WORKDIR + book getword regPendingImfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule XXX put this in a function? + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/reg.$CLASS_ID.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command register_imfile.pl --exp_tag $EXP_TAG --class_id $CLASS_ID --uri $URI $ARGS + end + command register_imfile.pl --exp_tag $EXP_TAG --class_id $CLASS_ID --uri $URI $ARGS + end + + # default exit status + task.exit default + process_exit regPendingImfile $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword regPendingImfile $options:0 state TIMEOUT + end +end + +# select exposures ready for register_exp.pl +task register.exp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + + stdout NULL + stderr $LOGSUBDIR/register.exp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command regtool -pendingexp -limit 20 + else + # save the DB name for the exit tasks + option $DB:$regPendingExp_DB + command regtool -pendingexp -limit 20 -dbname $DB:$regPendingExp_DB + $regPendingExp_DB ++ + if ($regPendingExp_DB >= $DB:n) set regPendingExp_DB = 0 + end + end + + # success + task.exit $EXIT_SUCCESS + # convert 'stdout' to book format + ipptool2book stdout regPendingExp -key exp_tag -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook regPendingExp + end + + # delete existing entries in the appropriate states + process_cleanup regPendingExp + end + + # default exit status + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# run the register_exp.pl script on pending exposures +task register.exp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 30 + + task.exec + book npages regPendingExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in regPendingExp (state == NULL) + book getpage regPendingExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword regPendingExp $pageName state RUN + book getword regPendingExp $pageName exp_tag -var EXP_TAG + book getword regPendingExp $pageName workdir -var WORKDIR + book getword regPendingExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host:(need to choose based on chips) + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/$EXP_TAG + $logfile = $outroot/$EXP_TAG.reg.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command register_exp.pl --exp_tag $EXP_TAG $ARGS + end + command register_exp.pl --exp_tag $EXP_TAG $ARGS + end + + # success + task.exit default + process_exit regPendingExp $options:0 $JOB_STATUS + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword regPendingExp $options:0 state TIMEOUT + end +end + +## XXX add a global path to output files Index: /branches/rel-1-1/ippTasks/stack.pro =================================================================== --- /branches/rel-1-1/ippTasks/stack.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/stack.pro (revision 12167) @@ -0,0 +1,171 @@ +### This file contains panTasks definitions for performing the image stacking. + +### After a stack (with associated stack_id) is defined, the stack is performed +### (tasks in stackSumSkyfile). + + +### Setups +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/stack +exec mkdir -p $LOGSUBDIR + +### Initialise the books containing the tasks to do +book init stackSumSkyfile + +### Database lists +$stackSkycell_DB = 0 + +### Check status of stacking tasks +macro stack.status + book listbook stackSumSkyfile +end + +### Reset stacking tasks +macro stack.reset + book init stackSumSkyfile +end + +### Turn stacking tasks on +macro stack.on + task stack.skycell.load + active true + end + task stack.skycell.run + active true + end +end + +### Turn stacking tasks off +macro stack.off + task stack.skycell.load + active false + end + task stack.skycell.run + active false + end +end + + +### Load tasks for doing the stack +### Tasks are loaded into stackSumSkyfile. +task stack.skycell.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/stack.skycell.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command stacktool -tosum -limit 20 + else + # save the DB name for the exit tasks + option $DB:$stackSkycell_DB + command stacktool -tosum -limit 20 -dbname $DB:$stackSkycell_DB + $stackSkycell_DB ++ + if ($stackSkycell_DB >= $DB:n) set stackSkycell_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout stackSumSkyfile -key stack_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook stackSumSkyfile + end + + # delete existing entries in the appropriate states + process_cleanup stackSumSkyfile + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +### Run tasks for calculating the stack overlaps +### Tasks are taken from stackSumSkyfile. +task stack.skycell.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 60 + + task.exec + book npages stackSumSkyfile -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in stackSumSkyfile (state == NULL) + book getpage stackSumSkyfile 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword stackSumSkyfile $pageName state RUN + book getword stackSumSkyfile $pageName stack_id -var STACK_ID + book getword stackSumSkyfile $pageName workdir -var WORKDIR + book getword stackSumSkyfile $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + # XXX need to choose based on stacks + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/stack$STACK_ID + $logfile = $outroot/skycell.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command stack_skycell.pl --stack_id $STACK_ID --workdir $WORKDIR $ARGS + end + command stack_skycell.pl --stack_id $STACK_ID --workdir $WORKDIR $ARGS + end + + # default exit status + task.exit default + process_exit stackSumSkyfile $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword stackSumSkyfile $options:0 state TIMEOUT + end +end + Index: /branches/rel-1-1/ippTasks/summit.copy.pro =================================================================== --- /branches/rel-1-1/ippTasks/summit.copy.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/summit.copy.pro (revision 12167) @@ -0,0 +1,308 @@ +## PanTasks scripts for Summit Copy + +$uri = http://otis/ds/skyprobe/ +$camera = skyprobe +$telescope = ps1 +$workdir = /home/moanui/jhoblitt/workdir + +if ($?parallel == 0) + $parallel = 0 +end + +# queue for summit exps that need to be queried +queueinit pzPendingExp +# queue for summit imfiles that need to be downloaded +queueinit pzPendingImfile +# queue for downloaded files that need to registered with pztool -copydone +queueinit pzCopyDone + +# run pzgetexp periodically to populate pzPendingExp +task pzgetexp + command pzgetexp -uri $uri -inst $camera -telescope $telescope + host local + + # timeout shorter than exec so jobs do not build up + periods -exec 30 + periods -poll 10 + periods -timeout 30 + + task.exit 0 + end + + task.exit default + echo "phaseZ pzgetexp: failure" + end + task.exit timeout + echo "phaseZ pzgetexp: timeout" + end +end + +# build a queue of exps/filesetids that need to be queried +task pztool.pendingexp + command pztool -pendingexp -simple + host local + + # timeout shorter than exec so jobs do not build up + periods -exec 30 + periods -poll 10 + periods -timeout 30 + + # success + task.exit 0 + local i Nstdout + queuesize stdout -var Nstdout + for i 0 $Nstdout + queuepop stdout -var line +# list word -split $line +# $exp_id = $word:0 +# $camera = $word:1 +# $telescope = $word:2 +# $dateobs = $word:3 +# $exp_type = $word:4 +# $uri = $word:5 +# $imfiles = $word:6 +# queuepush pzPendingExp -uniq -key 1:2:3 "NEW $uri $exp_id $camera $telescope $dateobs $exp_type $uri $imfiles" + queuepush pzPendingExp -uniq -key 1:2:3 "NEW $line" + end + + queuedrop pzPendingExp -key 0 DONE + end + + task.exit default + echo "phaseZ pending exp: failure" + end + task.exit timeout + echo "phaseZ pending exp: timeout" + end +end + +# run pzgetimfiles on pending exps +task pzgetimfile + periods -exec 5 + periods -poll 5 + periods -timeout 15 + + task.exec + queuesize pzPendingExp -var N + if ($N == 0) break + + # get a line out of the queue + queuepop pzPendingExp -var line -key 0 NEW + + # take the state out of the line + strpop line state + + # put the line back into the queue with a stea of RUN + queuepush pzPendingExp -replace -key 1:2:3 "RUN $line" + + # the STATE has already been removed from the line + list word -split $line + $exp_id = $word:0 + $camera = $word:1 + $telescope = $word:2 + $dateobs = $word:3 + $exp_type = $word:4 + $uri = $word:5 + $imfiles = $word:6 + + # specify choice of remote host:(need to choose based on chips) +# if ($parallel) +# host anyhost +# else +# host local +# end + + # store the current line + options "$line" + + echo command pzgetimfiles -uri $uri -filesetid $exp_id -inst $camera -telescope $telescope + command pzgetimfiles -uri $uri -filesetid $exp_id -inst $camera -telescope $telescope + end + + # success + task.exit 0 + queuepush pzPendingExp -replace -key 1:2:3 "DONE $options:0" + end + + task.exit default + queuepush pzPendingExp -replace -key 1:2:3 "FAIL $options:0" + end + + task.exit timeout + queuepush pzPendingExp -replace -key 1:2:3 "TIMEOUT $options:0" + end +end + +# build a queue of imfiles/files that need to be downloaded +task pztool.pendingimfile + command pztool -pendingimfile -simple + host local + + # timeout shorter than exec so jobs do not build up + periods -exec 30 + periods -poll 10 + periods -timeout 30 + + # success + task.exit 0 + local i Nstdout + queuesize stdout -var Nstdout + for i 0 $Nstdout + queuepop stdout -var line +# list word -split $line +# $exp_id = $word:0 +# $camera = $word:1 +# $telescope = $word:2 +# $file_id = $word:3 +# $bytes = $word:4 +# $md5sum = $word:5 +# $class = $word:6 +# $class_id = $word:7 +# $uri = $word:8 +# $exp_tag = $word:9 + + queuepush pzPendingImfile -uniq -key 1:2:3:7:8 "NEW $line" + end + + # delete existing entries which are DONE + queuedrop pzPendingImfile -key 0 DONE + end + + task.exit default + echo "phaseZ pending exp: failure" + end + task.exit timeout + echo "phaseZ pending exp: timeout" + end +end + +# get dsget to retreive an imfile and then call pztool -copydone +task dsget + periods -exec 5 + periods -poll 5 + periods -timeout 30 + + task.exec + queuesize pzPendingImfile -var N + if ($N == 0) break + + # get a line out of the queue + queuepop pzPendingImfile -var line -key 0 NEW + + # take the state out of the line + strpop line state + + # put the line back into the queue with a stea of RUN + queuepush pzPendingImfile -replace -key 1:2:3:7:8 "RUN $line" + + # the STATE has already been removed from the line + list word -split $line + $exp_id = $word:0 + $camera = $word:1 + $telescope = $word:2 + $file_id = $word:3 + $bytes = $word:4 + $md5sum = $word:5 + $class = $word:6 + $class_id = $word:7 + $uri = $word:8 + $exp_tag = $word:9 + +# # specify choice of remote host:(need to choose based on chips) +# if ($parallel) +# host anyhost +# else +# host local +# end + + # store the current line without the state + options "$line" + + echo "parsing line $line" + echo command dsget --uri $uri --filename $workdir/$exp_id.$class_id.fits --bytes $bytes --md5 $md5sum + command dsget --uri $uri --filename $workdir/$exp_id.$class_id.fits --bytes $bytes --md5 $md5sum + end + + # success + task.exit 0 + # could run copydone from here but how would the exit status be + # handled? + + list word -split $options:0 + $exp_id = $word:0 + $camera = $word:1 + $telescope = $word:2 + $file_id = $word:3 + $bytes = $word:4 + $md5sum = $word:5 + $class = $word:6 + $class_id = $word:7 + $uri = $word:8 + $exp_tag = $word:9 + queuepush pzCopyDone -key 1:2:3:7:8 "NEW $options:0 $workdir/$exp_id.$class_id.fits" + queuepush pzPendingExp -replace -key 1:2:3:7:8 "DONE $options:0" + end + + task.exit default + queuepush pzPendingExp -replace -key 1:2:3:7:8 "FAIL $options:0" + end + + task.exit timeout + queuepush pzPendingExp -replace -key 1:2:3:7:8 "TIMEOUT $options:0" + end +end + +task pztool.copydone + periods -exec 5 + periods -poll 5 + periods -timeout 15 + + host local + + task.exec + queuesize pzCopyDone -var N + if ($N == 0) break + + # get a line out of the queue + queuepop pzCopyDone -var line -key 0 NEW + + # take the state out of the line + strpop line state + + # put the line back into the queue with a stea of RUN + queuepush pzCopyDone -replace -key 1:2:3:7:8 "RUN $line" + + # the STATE has already been removed from the line + list word -split $line + $exp_id = $word:0 + $camera = $word:1 + $telescope = $word:2 + $file_id = $word:3 + $bytes = $word:4 + $md5sum = $word:5 + $class = $word:6 + $class_id = $word:7 + $uri = $word:8 + $exp_tag = $word:9 + $new_uri = $word:10 + + # store the current line without the state + options "$line" + + echo command pztool -copydone -exp_id $exp_id -inst $camera -telescope $telescope -class $class -class_id $class_id -uri $uri + command pztool -copydone -exp_id $exp_id -inst $camera -telescope $telescope -class $class -class_id $class_id -uri $new_uri + end + + # success + task.exit 0 + queuepush pzCopyDone -replace -key 1:2:3:6:7 "DONE $options:0" + end + + task.exit default + queuepush pzCopyDone -replace -key 1:2:3:6:7 "FAIL $options:0" + end + + task.exit timeout + queuepush pzCopyDone -replace -key 1:2:3:6:7 "TIMEOUT $options:0" + end +end Index: /branches/rel-1-1/ippTasks/testscript.pro =================================================================== --- /branches/rel-1-1/ippTasks/testscript.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/testscript.pro (revision 12167) @@ -0,0 +1,80 @@ +# test for pcontrol +macro test.pcontrol.simple + stop + for i 0 100 + job ls -R /etc + end + + status + host add alala + + status + run +end + +# test for pcontrol +macro test.pcontrol + exec p0tool -pendingimfile -simple | head -n 100 > list.dat + + stop + list line -x "cat list.dat" + echo $line:0 + for i 0 $line:n + list word -split $line:$i + job phase0_imfile.pl --exp_tag $word:0 --class_id fpa --uri $word:3 + end + + status + host add sn2 + host add sn3 + host add sn4 + host add sn5 + + status + run +end + +# test for pclient +macro test.pclient + exec p0tool -pendingimfile -simple | head -n 100 > list.dat + + list line -x "cat list.dat" + echo $line:0 + for i 0 $line:n + list word -split $line:$i + job phase0_imfile.pl --exp_tag $word:0 --class_id fpa --uri $word:3 + + for i 0 50 + check + output /dev/null + status + output stdout + if ($JOBSTATUS == EXIT) + $i = 50 + reset + echo "DONE" + else + usleep 200000 + end + end + if ($JOBSTATUS != EXIT) + echo TIMEOUT*** + end + end +end + +macro simple.test + for j 0 100 + job ls + for i 0 50 + check + status + if ($JOBSTATUS == EXIT) + $i = 50 + reset + else + usleep 10000 + end + end + end +end Index: /branches/rel-1-1/ippTasks/warp.pro =================================================================== --- /branches/rel-1-1/ippTasks/warp.pro (revision 12167) +++ /branches/rel-1-1/ippTasks/warp.pro (revision 12167) @@ -0,0 +1,302 @@ +### This file contains panTasks definitions for performing the image warping. + +### This is done in two (main) steps. After a warp (with associated warp_id) is defined, +### overlaps between the exposure being warped and skycells are calculated (tasks in warpInputExp). +### Then for each skycell, the warp is made (tasks in warpPendingSkycell). + + +### Setups +if ($?network == 0) + $network = 1 +end +if ($?parallel == 0) + $parallel = 0 +end +if ($?VERBOSE == 0) + echo "VERBOSE not defined: load pantasks.pro first" + break +end +if ($?LOGDIR == 0) + echo "LOGDIR not defined: load pantasks.pro first" + break +end + +$LOGSUBDIR = $LOGDIR/warp +exec mkdir -p $LOGSUBDIR + +### Initialise the books containing the tasks to do +book init warpInputExp +book init warpPendingSkyCell + +### Database lists +$warpExp_DB = 0 +$warpSkycell_DB = 0 + +### Check status of warping tasks +macro warp.status + book listbook warpInputExp + book listbook warpPendingSkyCell +end + +### Reset warping tasks +macro warp.reset + book init warpInputExp + book init warpPendingSkyCell +end + +### Turn warping tasks on +macro warp.on + task warp.exp.load + active true + end + task warp.exp.run + active true + end + task warp.skycell.load + active true + end + task warp.skycell.run + active true + end +end + +### Turn warping tasks off +macro warp.off + task warp.exp.load + active false + end + task warp.exp.run + active false + end + task warp.skycell.load + active false + end + task warp.skycell.run + active false + end +end + +### Load tasks for calculating the warp overlaps +### Tasks are loaded into warpInputExp. +task warp.exp.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/warp.exp.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command warptool -tooverlap -limit 20 + else + # save the DB name for the exit tasks + option $DB:$warpExp_DB + command warptool -tooverlap -limit 20 -dbname $DB:$warpExp_DB + $warpExp_DB ++ + if ($warpExp_DB >= $DB:n) set warpExp_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout warpInputExp -key warp_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook warpInputExp + end + + # delete existing entries in the appropriate states + process_cleanup warpInputExp + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +### Run tasks for calculating the warp overlaps +### Tasks are taken from warpInputExp. +task warp.exp.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 60 + + task.exec + book npages warpInputExp -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in warpInputExp (state == NULL) + book getpage warpInputExp 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword warpInputExp $pageName state RUN + book getword warpInputExp $pageName warp_id -var WARP_ID + book getword warpInputExp $pageName camera -var CAMERA + book getword warpInputExp $pageName workdir -var WORKDIR + book getword warpInputExp $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + # XXX need to choose based on warps + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/warp$WARP_ID + $logfile = $outroot/overlap.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command warp_overlap.pl --warp_id $WARP_ID --camera $CAMERA --workdir $WORKDIR $ARGS + end + command warp_overlap.pl --warp_id $WARP_ID --camera $CAMERA --workdir $WORKDIR $ARGS + end + + # default exit status + task.exit default + process_exit warpInputExp $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword warpInputExp $options:0 state TIMEOUT + end +end + + +### Load tasks for doing the warps +### Tasks are loaded into warpPendingSkyCell. +task warp.skycell.load + host local + + periods -poll $loadpoll + periods -exec $loadexec + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGSUBDIR/warp.skycell.log + + task.exec + if ($DB:n == 0) + option DEFAULT + command warptool -towarped -limit 20 + else + # save the DB name for the exit tasks + option $DB:$warpSkycell_DB + command warptool -towarped -limit 20 -dbname $DB:$warpSkycell_DB + $warpSkycell_DB ++ + if ($warpSkycell_DB >= $DB:n) set warpSkycell_DB = 0 + end + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout warpPendingSkyCell -key warp_id:skycell_id:tess_id -uniq -setword dbname $options:0 + if ($VERBOSE > 2) + book listbook warpPendingSkyCell + end + + # delete existing entries in the appropriate states + process_cleanup warpPendingSkyCell + end + + # locked list + task.exit default + showcommand failure + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +### Run tasks for calculating the warp overlaps +### Tasks are taken from warpPendingSkyCell. +task warp.skycell.run + periods -poll $runpoll + periods -exec $runexec + periods -timeout 60 + + task.exec + book npages warpPendingSkyCell -var N + if ($N == 0) break + if ($network == 0) break + + # look for new images in warpPendingSkyCell (state == NULL) + book getpage warpPendingSkyCell 0 -var pageName -key state NULL + if ($pageName == NULL) break + + book setword warpPendingSkyCell $pageName state RUN + book getword warpPendingSkyCell $pageName warp_id -var WARP_ID + book getword warpPendingSkyCell $pageName skycell_id -var SKYCELL_ID + book getword warpPendingSkyCell $pageName tess_id -var TESS_ID + book getword warpPendingSkyCell $pageName exp_tag -var EXP_TAG + book getword warpPendingSkyCell $pageName camera -var CAMERA + book getword warpPendingSkyCell $pageName workdir -var WORKDIR + book getword warpPendingSkyCell $pageName dbname -var DBNAME + set_standard_args + + # specify choice of remote host + # XXX need to choose based on warps + if ($parallel) + host anyhost + else + host local + end + + ## generate output log based on filerule + $outroot = `ipp_datapath.pl $WORKDIR` + $outroot = $outroot/warp$WARP_ID + $logfile = $outroot/skycell.log + stdout $logfile + stderr $logfile + exec mkdir -p $outroot + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command warp_skycell.pl --warp_id $WARP_ID --skycell_id $SKYCELL_ID --tess_id $TESS_ID --camera $CAMERA --workdir $WORKDIR $ARGS + end + command warp_skycell.pl --warp_id $WARP_ID --skycell_id $SKYCELL_ID --tess_id $TESS_ID --camera $CAMERA --workdir $WORKDIR $ARGS + end + + # default exit status + task.exit default + process_exit warpPendingSkyCell $options:0 $JOB_STATUS + end + + # operation timed out? + task.exit timeout + showcommand timeout + book setword warpPendingSkyCell $options:0 state TIMEOUT + end +end + Index: /branches/rel-1-1/ippconfig/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +config.log +config.status +configure +dvo.site +install-sh +ippconfig-0.0.1.tar.bz2 +ippconfig-0.0.1.tar.gz +missing +ipprc.config Index: /branches/rel-1-1/ippconfig/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/Makefile.am (revision 12167) @@ -0,0 +1,45 @@ +SUBDIRS = \ + dvo.cameras \ + recipes \ + isp \ + megacam \ + simple \ + simtest + +install_files = \ + GSCregions.tbl \ + dvo.photcodes + +built_sources = \ + ipprc.config.in \ + dvo.site.in + +built_files = \ + ipprc.config \ + dvo.site + +installdir = $(datadir)/ippconfig + +install_DATA = $(install_files) $(built_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) $(built_sources) + +BUILT_SOURCES = $(built_files) + +ACLOCAL_AMFLAGS = -I m4 + +# From the autoconf manual, section 4.7.2 "Installation Directory Variables" +edit = sed \ + -e 's|@datadir[@]|$(datadir)|g' \ + -e 's|@prefix[@]|$(prefix)|g' \ + -e 's|@IPP_CONFIG_DIR[@]|$(IPP_CONFIG_DIR)|g' + +ipprc.config dvo.site: Makefile + rm -f $@ + $(edit) '$(srcdir)/$@.in' > $@ + +ipprc.config: $(srcdir)/ipprc.config.in +dvo.site: $(srcdir)/dvo.site.in Index: /branches/rel-1-1/ippconfig/README =================================================================== --- /branches/rel-1-1/ippconfig/README (revision 12167) +++ /branches/rel-1-1/ippconfig/README (revision 12167) @@ -0,0 +1,18 @@ + +Please read installation section of the IPP User's Guide for more details. + +To build and install the IPP configuration scripts, run the following: + +configure +make +make install + +After installation: + +Copy dvo.site to ~/.ptolemyrc + +Copy ipprc.config to ~/.ipprc + +Edit this file: + - Set the DBUSER and DBPASSWORD to your mysql username and password + Index: /branches/rel-1-1/ippconfig/autogen.sh =================================================================== --- /branches/rel-1-1/ippconfig/autogen.sh (revision 12167) +++ /branches/rel-1-1/ippconfig/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ippConfig +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +#($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $LIBTOOlIZE installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" +# DIE=1 +#} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +#($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $AUTOHEADER installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" +# DIE=1 +#} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +#$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +#$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ippconfig/configure.ac =================================================================== --- /branches/rel-1-1/ippconfig/configure.ac (revision 12167) +++ /branches/rel-1-1/ippconfig/configure.ac (revision 12167) @@ -0,0 +1,23 @@ +AC_PREREQ(2.59) + +AC_INIT([ippConfig], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([ipprc.config.in]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_MAINTAINER_MODE + +AC_PROG_INSTALL + +IPP_CONFIG_DIR="${datadir}/ippconfig" +AC_SUBST(IPP_CONFIG_DIR) + +AC_CONFIG_FILES([ + Makefile + dvo.cameras/Makefile + recipes/Makefile + isp/Makefile + megacam/Makefile + simple/Makefile + simtest/Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/ippconfig/ctio_mosaic2/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/ctio_mosaic2/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ctio_mosaic2/camera.config (revision 12167) @@ -0,0 +1,126 @@ +# Camera configuration file for MegaCam: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR ctio_mosaic2/format.config +END + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + ccd00 STR LeftAmp RightAmp + ccd01 STR LeftAmp RightAmp + ccd02 STR LeftAmp RightAmp + ccd03 STR LeftAmp RightAmp + ccd04 STR LeftAmp RightAmp + ccd05 STR LeftAmp RightAmp + ccd06 STR LeftAmp RightAmp + ccd07 STR LeftAmp RightAmp +END + + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + VR.Supermacho.c6027 STR VR +END + +# Recipe options +RECIPES METADATA + # Recipes for ppImage + PPIMAGE STR ctio_mosaic2/ppImage.config # Default: all (normal) options on + PSPHOT STR ctio_mosaic2/psphot.config # Default: all (normal) options on +END + + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN IMFILE.MEANSTDEV + FLAT MULTI + SKYFLAT MULTI + DOMEFLAT MULTI + + BIAS LIMITS * 0 1 4 0.5 4 0 3 4 0 0 0 0.5 + DARK LIMITS * 0 1 4 0.5 4 0 3 4 0 0 0 0.5 + FLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 + SKYFLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 + DOMEFLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 3 0 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + + +FILERULES METADATA + ### Redirections + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CELL IMAGE + + ### use these entries to get the detrend images from specific files + #PPIMAGE.MASK INPUT megacam/mask.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP MASK + #PPIMAGE.BIAS INPUT path://PAP_ESSENCE/CTIO_MOSAIC2.bias.1.2.fpa.fits {CHIP.NAME} {CELL.NAME} NONE CELL IMAGE + #PPIMAGE.DARK INPUT file:///something.fits {CHIP.NAME} {CHIP.NAME} NONE CELL IMAGE + #PPIMAGE.FLAT INPUT file:///something.fits {CHIP.NAME} {CHIP.NAME} NONE CELL IMAGE + #PPIMAGE.FRINGE INPUT file:///something.fits {CHIP.NAME} {CHIP.NAME} NONE CELL FRINGE + + ### use these entries to get the detrend images from the database + #PPIMAGE.MASK INPUT @DETDB {CHIP.NAME} fpa NONE CHIP IMAGE + PPIMAGE.BIAS INPUT @DETDB {CHIP.NAME} fpa NONE CHIP IMAGE + PPIMAGE.DARK INPUT @DETDB {CHIP.NAME} fpa NONE CHIP IMAGE + PPIMAGE.FLAT INPUT @DETDB {CHIP.NAME} fpa FILTER CHIP IMAGE + + PSPHOT.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + PSASTRO.INPUT.CMP INPUT @FILES NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT @FILES NONE SMPDATA PHU CHIP CMF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.LEVEL DATA.LEVEL FILE.TYPE FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CELL IMAGE TRUE NONE + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.mask.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CELL MASK FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.wt.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CELL WEIGHT FALSE NONE + PPIMAGE.BIN1 OUTPUT {OUTPUT}.b1.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE NONE + PPIMAGE.BIN2 OUTPUT {OUTPUT}.b2.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE NONE + + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.chip.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.fpa1.fits NONE NONE NONE FPA FPA IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.fpa2.fits NONE NONE NONE FPA FPA IMAGE TRUE NONE + + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT}.{CHIP.NAME} NONE NONE PHU CHIP CHIP RAW TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE PHU CHIP CHIP SX TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE PHU CHIP CHIP OBJ TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CHIP CHIP CMF TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.cmp NONE NONE PHU CHIP CHIP CMP TRUE NONE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.smp NONE NONE PHU CHIP CHIP CMP TRUE NONE + +END Index: /branches/rel-1-1/ippconfig/ctio_mosaic2/format.config =================================================================== --- /branches/rel-1-1/ippconfig/ctio_mosaic2/format.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ctio_mosaic2/format.config (revision 12167) @@ -0,0 +1,158 @@ +# Format file for CTIO Mosaic2 camera used by ESSENCE + +# How to identify this type +RULE METADATA + TELESCOP STR CTIO 4.0 meter telescope + DETECTOR STR Mosaic2 + EXTEND BOOL T + NEXTEND S32 16 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CELL # The extensions represent cells + FPA.NAME STR FILENAME # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:type + im1 STR ccd00:LeftAmp:left + im2 STR ccd00:RightAmp:right + im3 STR ccd01:LeftAmp:left + im4 STR ccd01:RightAmp:right + im5 STR ccd02:LeftAmp:left + im6 STR ccd02:RightAmp:right + im7 STR ccd03:LeftAmp:left + im8 STR ccd03:RightAmp:right + im9 STR ccd04:LeftAmp:left + im10 STR ccd04:RightAmp:right + im11 STR ccd05:LeftAmp:left + im12 STR ccd05:RightAmp:right + im13 STR ccd06:LeftAmp:left + im14 STR ccd06:RightAmp:right + im15 STR ccd07:LeftAmp:left + im16 STR ccd07:RightAmp:right +END + +# Specify the cell data +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR TRIMSEC + CELL.XPARITY S32 1 + CELL.X0 S32 0 + END + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR TRIMSEC + CELL.XPARITY S32 1 + CELL.X0 S32 1024 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR OBJECT + FPA.TIME STR MJD-OBS + CHIP.TEMP STR CCDTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.POSANGLE F32 0.0 + FPA.TIMESYS STR UTC # Header says "UTC approximate" + FPA.ALT F32 0.0 # Not present in header + FPA.AZ F32 0.0 # Not present in header + CELL.TIMESYS STR UTC # Header says "UTC approximate" + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 + + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA + ccd00 S32 0 + ccd01 S32 2048 + ccd02 S32 4096 + ccd03 S32 6144 + ccd04 S32 0 + ccd05 S32 2048 + ccd06 S32 4096 + ccd07 S32 6144 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA + ccd00 S32 0 + ccd01 S32 0 + ccd02 S32 0 + ccd03 S32 0 + ccd04 S32 4096 + ccd05 S32 4096 + ccd06 S32 4096 + ccd07 S32 4096 + END + CHIP.XPARITY S32 1 + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA + ccd00 S32 1 + ccd01 S32 1 + ccd02 S32 1 + ccd03 S32 1 + ccd04 S32 1 + ccd05 S32 1 + ccd06 S32 1 + ccd07 S32 1 + END + +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# FPA.BIAS METADATA +# TABLE STR Camera +# COLUMN STR gain +# chipId STR {CHIP.NAME} +# cellId STR {CELL.NAME} +# time STR {CELL.TIME} +# END +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +# CHIP.X0 STR FORTRAN +# CHIP.Y0 STR FORTRAN +# CELL.X0 STR FORTRAN +# CELL.Y0 STR FORTRAN +END Index: /branches/rel-1-1/ippconfig/ctio_mosaic2/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/ctio_mosaic2/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ctio_mosaic2/ppImage.config (revision 12167) @@ -0,0 +1,110 @@ +### ppImage recipe configuration file for CTIO MOSAIC2 + +# List of tasks to perform +SHUTTER BOOL FALSE # Shutter correction +DARK BOOL FALSE # Dark correction + +BASE.FITS BOOL TRUE # Save base detrended image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 3 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# Overscan, bias, dark, shutter, flat-field +PPIMAGE_TEST METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + CHIP.FITS BOOL TRUE # Save chip-mosaic-ed image? + FPA1.FITS BOOL TRUE # Save 1st binned fpa image? + FPA2.FITS BOOL TRUE # Save 2nd binned fpa image? + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + BIN1.JPEG BOOL TRUE # Save 1st binned jpeg? + BIN2.JPEG BOOL TRUE # Save 2nd binned jpeg? +END + +#################################################################################### +# Need the following in order to turn off dark and shutter for the site-level recipe +#################################################################################### + +# Dark subtraction only +PPIMAGE_D METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Shutter correction only +PPIMAGE_S METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark +PPIMAGE_OBD METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter +PPIMAGE_OBDS METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter, flat-field +PPIMAGE_OBDSF METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter, flat-field, fringe +PPIMAGE_OBDSFR METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction +END + Index: /branches/rel-1-1/ippconfig/ctio_mosaic2/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/ctio_mosaic2/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ctio_mosaic2/psphot.config (revision 12167) @@ -0,0 +1,116 @@ + +# these options turn on different inputs and/or outputs +SAVE.BACKMDL BOOL FALSE +SAVE.BACKGND BOOL FALSE +SAVE.BACKSUB BOOL FALSE +SAVE.RESID BOOL TRUE +SAVE.PSF BOOL FALSE +LOAD.PSF BOOL FALSE +SAVE.PLOTS BOOL TRUE + +# the zero point is used to set a basic scale for DVO +# XXX it may not currently be read : double check this (EAM) +ZERO_POINT F32 25.000 # zero point used by DVO + +# these parameter govern how the background is measured +BACKGROUND_XBIN S32 128 # size of background superpixels +BACKGROUND_YBIN S32 128 # size of background superpixels +IMSTATS_NPIX S32 2000 # number of pixels to use for sky estimate boxes: + +SKY_BIAS F32 0.0 # offset applied to measured sky (FOR TESTING) +SKY_FIT_ORDER S32 0 +SKY_FIT_LINEAR BOOL FALSE +SKY_STAT STR FITTED_MEAN # statistic used to measure background +# allowed values for SKY_STAT: +# SAMPLE_MEAN, SAMPLE_MEDIAN, CLIPPED_MEAN, ROBUST_MEAN, ROBUST_QUARTILE, FITTED_MEAN + +# masking parameters (XXX EAM : rework this to use psRegion like ANALYSIS_REGION) +XMIN F32 0 # minimum valid x-coord +XMAX F32 0 # maximum valid x-coord +YMIN F32 0 # minimum valid y-coord +YMAX F32 0 # maximum valid y-coord +SATURATION F32 64000 # saturation level on this chip + +# peak finding +PEAKS_SMOOTH_SIGMA F32 1.0 # smoothing kernel sigma in pixels +PEAKS_SMOOTH_NSIGMA F32 2.0 # smoothing kernel width in sigmas +PEAKS_NSIGMA_LIMIT F32 50.0 # peak significance threshold + +# parameters to control the selection of the peak in the Sx,Sy plane +MOMENTS_SCALE F32 0.1 +MOMENTS_SN_MIN F32 10.0 +MOMENTS_SX_MAX F32 3.0 +MOMENTS_SY_MAX F32 3.0 +MOMENTS_AR_MAX F32 1.5 # maximum axial ratio: 1 / AR < (sx / sy) < AR + +# basic object statistics +SKY_INNER_RADIUS F32 15 # square annulus for local sky measurement +SKY_OUTER_RADIUS F32 25 # square annulus for local sky measurement +PSF_MOMENTS_RADIUS F32 3 # calculate initial source moments with this radius +PSF_SN_LIM F32 50 # minimum S/N for stars used for PSF model +PSF_MAX_NSTARS S32 300 # limit number of stars used for PSF model + +# PSF model parameters : choose the PSF model +# list as many PSF_MODEL options as desired +# PSF_MODEL MULTI +PSF_MODEL STR PS_MODEL_GAUSS +# PSF_MODEL STR PS_MODEL_PGAUSS +# PSF_MODEL STR PS_MODEL_QGAUSS +# PSF_MODEL STR PS_MODEL_TGAUSS ## not well tested, not very successful + +# PSF.TREND.MASK must be a 2D polynomial +# the specified values are ignored but define the active components of the polynomial +PSF.TREND.MASK METADATA + NORDER_X S32 2 # number of x orders + NORDER_Y S32 2 # number of y orders + VAL_X00_Y00 F64 1 # polynomial coefficient + VAL_X01_Y00 F64 1 # polynomial coefficient + VAL_X00_Y01 F64 1 # polynomial coefficient + VAL_X02_Y00 F64 1 # polynomial coefficient + VAL_X01_Y01 F64 1 # polynomial coefficient + VAL_X00_Y02 F64 1 # polynomial coefficient + NELEMENTS S32 6 # number of unmasked components +END # folder for 2D polynomial + +PSF_FIT_RADIUS F32 15.0 # fitting radius for test PSF model +PSF_REF_RADIUS F32 25.0 # aperture magnitudes are scaled via + # curve-of-growth to this radius +# PSF-like source model parameters +PSF_FIT_NSIGMA F32 1.0 # significance for pixel included in fit +PSF_FIT_PADDING F32 2.0 # extra annulus to use for fit +PSF_SHAPE_NSIGMA F32 3.0 # max significance for shape variation +PSF_MIN_SN F32 2.0 # reject objects below this significance +PSF_MAX_CHI F32 50.0 # reject objects worse that this +FULL_FIT_SN_LIM F32 10.0 + +# EXTended source model parameters +EXT_MODEL STR PS_MODEL_PGAUSS +EXT_MIN_SN F32 50.0 # fit galaxies above this S/N limit +EXT_FIT_NSIGMA F32 1 # significance for pixel included in fit +EXT_FIT_PADDING F32 5 # extra annulus to use for fit +EXT_MOMENTS_RADIUS F32 9 + +FITMODE STR BLEND +DEBLEND_PEAK_FRACTION F32 0.1 +DEBLEND_SKY_NSIGMA F32 10.0 + +# APTREND STR NONE, CONSTANT, SKYBIAS, SKYSAT, XY_LIN, SKY_XY_LIN, SKYSAT_XY_LIN, ALL +APTREND STR CONSTANT +AP_MIN_SN F32 25.0 + +# test options +# BREAK_POINT may be one of (PEAKS, MOMENTS, PSFMODEL, ENSEMBLE) +# BREAK_POINT STR MOMENTS +# PEAKS_OUTPUT_FILE STR peaks.dat +# MOMENTS_OUTPUT_FILE STR moments.dat +# ANALYSIS_REGION STR [1000:1600,2800:3400] +# POISSON_ERRORS BOOL TRUE + +# optional parameter to limit the actual analysis to a fraction of the image +# do not uncomment this in the master psphot.config file +# ANALYSIS_REGION STR [1000:1600,2800:3400] + +IGNORE_GROWTH BOOL FALSE +CONSTANT_PHOTOMETRIC_WEIGHTS BOOL TRUE # Should the photometric code [currently only ensemblePSF] refuse to weight each pixel by it's significance? +INTERPOLATE_AP BOOL TRUE +POISSON_ERRORS BOOL TRUE Index: /branches/rel-1-1/ippconfig/dvo.cameras/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/dvo.cameras/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.cameras/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/ippconfig/dvo.cameras/ISP-Apogee.config =================================================================== --- /branches/rel-1-1/ippconfig/dvo.cameras/ISP-Apogee.config (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.cameras/ISP-Apogee.config (revision 12167) @@ -0,0 +1,44 @@ + +# location of DVO database tables +CATDIR /data/alala/eugene/isp/catdir + +# keywords used by DVO to interpret the headers + +# used by parse_time to find time-related keywords +MJD-KEYWORD MJD-OBS +DATE-KEYWORD NONE +DATE-MODE NONE +UT-KEYWORD NONE +JD-KEYWORD NONE + +# other keyword abstractions +EXPTIME-KEYWORD EXPTIME +AIRMASS-KEYWORD AIRMASS +CCDNUM-KEYWORD EXTNAME +ST-KEYWORD NONE +OBSERVATORY-LATITUDE NONE +OBSERVATORY-LONGITUDE NONE +SUBPIX_DATAFILE NONE + +# instrumental magnitude range for calibration mode +CAL_INSTMAG_MAX 0 +CAL_INSTMAG_MIN 0 + +# exclude overscan region from the dB image boundaries +XOVERSCAN 0 +YOVERSCAN 0 + +# only upload stars within region; a value of 0 means ignore the limit +ADDSTAR_XMIN 0 +ADDSTAR_XMAX 0 +ADDSTAR_YMIN 0 +ADDSTAR_YMAX 0 + +# exclude stars with SN > SNLIMIT (ADDSTAR_SNLIMIT overrides old name MIN_SN_FSTAT) +ADDSTAR_SNLIMIT 0 + +# correlation radius (arcseconds) +ADDSTAR_RADIUS 20 + +# scaled correlation radius +ADDSTAR_NSIGMA 0 Index: /branches/rel-1-1/ippconfig/dvo.cameras/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/dvo.cameras/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.cameras/Makefile.am (revision 12167) @@ -0,0 +1,15 @@ + +installdir = $(datadir)/ippconfig/dvo.cameras + +install_files = \ + ISP-Apogee.config \ + megacam.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/dvo.cameras/megacam.config =================================================================== --- /branches/rel-1-1/ippconfig/dvo.cameras/megacam.config (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.cameras/megacam.config (revision 12167) @@ -0,0 +1,44 @@ + +# location of DVO database tables +CATDIR /data/alala/eugene/isp/catdir + +# keywords used by DVO to interpret the headers + +# keyword abstractions: +DATE-KEYWORD DATE-OBS +DATE-MODE yyyy-mm-dd +UT-KEYWORD UTC-OBS +JD-KEYWORD NONE +MJD-KEYWORD NONE + +# other keyword abstractions +EXPTIME-KEYWORD EXPTIME +AIRMASS-KEYWORD AIRMASS +CCDNUM-KEYWORD EXTNAME +ST-KEYWORD NONE +OBSERVATORY-LATITUDE NONE +OBSERVATORY-LONGITUDE NONE +SUBPIX_DATAFILE NONE + +# instrumental magnitude range for calibration mode +CAL_INSTMAG_MAX 0 +CAL_INSTMAG_MIN 0 + +# exclude overscan region from the dB image boundaries +XOVERSCAN 0 +YOVERSCAN 0 + +# only upload stars within region; a value of 0 means ignore the limit +ADDSTAR_XMIN 0 +ADDSTAR_XMAX 0 +ADDSTAR_YMIN 0 +ADDSTAR_YMAX 0 + +# exclude stars with SN > SNLIMIT (ADDSTAR_SNLIMIT overrides old name MIN_SN_FSTAT) +ADDSTAR_SNLIMIT 0 + +# correlation radius (arcseconds) +ADDSTAR_RADIUS 1.0 + +# scaled correlation radius +ADDSTAR_NSIGMA 0 Index: /branches/rel-1-1/ippconfig/dvo.photcodes =================================================================== --- /branches/rel-1-1/ippconfig/dvo.photcodes (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.photcodes (revision 12167) @@ -0,0 +1,416 @@ + +# this file contains the list of valid photometry codes. there should +# be one code for each combination of CCD, filter, and telescope (and +# possibly additional ones if filter transmission reduces with time). +# The code on each line is a unique number, while the name is a +# representative name. The type defines how the photometry is +# treated. There can only be one primary photcode. There should only +# be a few secondary photcodes: these are the calibrated values for +# stars. The dependent photcodes are those which are equivalent to a +# primary or secondary photcode, and are equated after photometric +# solutions. Reference photcodes are for anything without a dynamic +# solution: the reference values are provided externally. + +# NOTE: the photcodes defined below supplement CFHT Elixir values. +# Do not use this photcode file with old CFHT DVO databases. + +# camera ranges used in this file: +# megacam: u: 100-139, g: 200-239, r: 300-339, i: 400-439, z: 500-539 +# cfh12k: B: 140-152, V: 240-252, R: 340-352, I: 440-452, Z: 540-552, NB: 600-693 +# PS1 ISP: g: 3200, r: 3300, i: 3400, z: 3500, y: 3600 +# PS1 TC3: g: 3280-3296, r: 3380-3396, i: 3480-3496, z: 3580-3596, y: 3680-3696, +# PS1 GPC1: g: 3201-3264, r: 3301-3364, i: 3401-3464, z: 3501-3564, y: 3601-3664 + +# external references: 1000 - 2999 + +# code name type zero airmass offset c1 c2 slope equivalence + 1 g pri 0.0 - - 1003 1004 0.016 - 1050 + 2 r sec 0.0 - - 1003 1004 0.008 - 1050 + 3 i sec 0.0 - - 1003 1004 0.028 - 1050 + 4 z sec 0.0 - - 1003 1004 0.107 - 1050 + 5 y sec 0.0 - - - - - - 1050 + + 1010 U_L92 ref - - - - - - - - + 1011 B_L92 ref - - - - - - - - + 1012 V_L92 ref - - - - - - - - + 1013 R_L92 ref - - - - - - - - + 1014 I_L92 ref - - - - - - - - + + 1020 U_STET ref - - - - - - - - + 1021 B_STET ref - - - - - - - - + 1022 V_STET ref - - - - - - - - + 1023 R_STET ref - - - - - - - - + 1024 I_STET ref - - - - - - - - + + 1051 u_SDSS ref - - - - - - - - + 1052 g_SDSS ref - - - - - - - - + 1053 r_SDSS ref - - - - - - - - + 1054 i_SDSS ref - - - - - - - - + 1055 z_SDSS ref - - - - - - - - + + 1000 USNO_BLUE ref - - - - - - - - + 1001 USNO_RED ref - - - - - - - - + 1002 USNO_J ref - - - - - - - - + 1003 USNO_F ref - - - - - - - - + 1004 USNO_N ref - - - - - - - - + + 1100 GSC ref - - - - - - - - + + 2020 TYCHO_B ref - - - - - - - - + 2021 TYCHO_V ref - - - - - - - - + + 2011 2MASS_J ref - - - - - - - - + 2012 2MASS_H ref - - - - - - - - + 2013 2MASS_K ref - - - - - - - - + +### megacam photcodes: + 100 MEGACAM.u.00 dep 25.280 -0.35 - - - - - 1 + 101 MEGACAM.u.01 dep 25.280 -0.35 - - - - - 1 + 102 MEGACAM.u.02 dep 25.280 -0.35 - - - - - 1 + 103 MEGACAM.u.03 dep 25.280 -0.35 - - - - - 1 + 104 MEGACAM.u.04 dep 25.280 -0.35 - - - - - 1 + 105 MEGACAM.u.05 dep 25.280 -0.35 - - - - - 1 + 106 MEGACAM.u.06 dep 25.280 -0.35 - - - - - 1 + 107 MEGACAM.u.07 dep 25.280 -0.35 - - - - - 1 + 108 MEGACAM.u.08 dep 25.280 -0.35 - - - - - 1 + 109 MEGACAM.u.09 dep 25.280 -0.35 - - - - - 1 + 110 MEGACAM.u.10 dep 25.280 -0.35 - - - - - 1 + 111 MEGACAM.u.11 dep 25.280 -0.35 - - - - - 1 + 112 MEGACAM.u.12 dep 25.280 -0.35 - - - - - 1 + 113 MEGACAM.u.13 dep 25.280 -0.35 - - - - - 1 + 114 MEGACAM.u.14 dep 25.280 -0.35 - - - - - 1 + 115 MEGACAM.u.15 dep 25.280 -0.35 - - - - - 1 + 116 MEGACAM.u.16 dep 25.280 -0.35 - - - - - 1 + 117 MEGACAM.u.17 dep 25.280 -0.35 - - - - - 1 + 118 MEGACAM.u.18 dep 25.280 -0.35 - - - - - 1 + 119 MEGACAM.u.19 dep 25.280 -0.35 - - - - - 1 + 120 MEGACAM.u.20 dep 25.280 -0.35 - - - - - 1 + 121 MEGACAM.u.21 dep 25.280 -0.35 - - - - - 1 + 122 MEGACAM.u.22 dep 25.280 -0.35 - - - - - 1 + 123 MEGACAM.u.23 dep 25.280 -0.35 - - - - - 1 + 124 MEGACAM.u.24 dep 25.280 -0.35 - - - - - 1 + 125 MEGACAM.u.25 dep 25.280 -0.35 - - - - - 1 + 126 MEGACAM.u.26 dep 25.280 -0.35 - - - - - 1 + 127 MEGACAM.u.27 dep 25.280 -0.35 - - - - - 1 + 128 MEGACAM.u.28 dep 25.280 -0.35 - - - - - 1 + 129 MEGACAM.u.29 dep 25.280 -0.35 - - - - - 1 + 130 MEGACAM.u.30 dep 25.280 -0.35 - - - - - 1 + 131 MEGACAM.u.31 dep 25.280 -0.35 - - - - - 1 + 132 MEGACAM.u.32 dep 25.280 -0.35 - - - - - 1 + 133 MEGACAM.u.33 dep 25.280 -0.35 - - - - - 1 + 134 MEGACAM.u.34 dep 25.280 -0.35 - - - - - 1 + 135 MEGACAM.u.35 dep 25.280 -0.35 - - - - - 1 + 136 MEGACAM.u.36 dep 25.280 -0.35 - - - - - 1 + 137 MEGACAM.u.37 dep 25.280 -0.35 - - - - - 1 + 138 MEGACAM.u.38 dep 25.280 -0.35 - - - - - 1 + 139 MEGACAM.u.39 dep 25.280 -0.35 - - - - - 1 + + 200 MEGACAM.g.00 dep 26.460 -0.15 - - - - - 2 + 201 MEGACAM.g.01 dep 26.460 -0.15 - - - - - 2 + 202 MEGACAM.g.02 dep 26.460 -0.15 - - - - - 2 + 203 MEGACAM.g.03 dep 26.460 -0.15 - - - - - 2 + 204 MEGACAM.g.04 dep 26.460 -0.15 - - - - - 2 + 205 MEGACAM.g.05 dep 26.460 -0.15 - - - - - 2 + 206 MEGACAM.g.06 dep 26.460 -0.15 - - - - - 2 + 207 MEGACAM.g.07 dep 26.460 -0.15 - - - - - 2 + 208 MEGACAM.g.08 dep 26.460 -0.15 - - - - - 2 + 209 MEGACAM.g.09 dep 26.460 -0.15 - - - - - 2 + 210 MEGACAM.g.10 dep 26.460 -0.15 - - - - - 2 + 211 MEGACAM.g.11 dep 26.460 -0.15 - - - - - 2 + 212 MEGACAM.g.12 dep 26.460 -0.15 - - - - - 2 + 213 MEGACAM.g.13 dep 26.460 -0.15 - - - - - 2 + 214 MEGACAM.g.14 dep 26.460 -0.15 - - - - - 2 + 215 MEGACAM.g.15 dep 26.460 -0.15 - - - - - 2 + 216 MEGACAM.g.16 dep 26.460 -0.15 - - - - - 2 + 217 MEGACAM.g.17 dep 26.460 -0.15 - - - - - 2 + 218 MEGACAM.g.18 dep 26.460 -0.15 - - - - - 2 + 219 MEGACAM.g.19 dep 26.460 -0.15 - - - - - 2 + 220 MEGACAM.g.20 dep 26.460 -0.15 - - - - - 2 + 221 MEGACAM.g.21 dep 26.460 -0.15 - - - - - 2 + 222 MEGACAM.g.22 dep 26.460 -0.15 - - - - - 2 + 223 MEGACAM.g.23 dep 26.460 -0.15 - - - - - 2 + 224 MEGACAM.g.24 dep 26.460 -0.15 - - - - - 2 + 225 MEGACAM.g.25 dep 26.460 -0.15 - - - - - 2 + 226 MEGACAM.g.26 dep 26.460 -0.15 - - - - - 2 + 227 MEGACAM.g.27 dep 26.460 -0.15 - - - - - 2 + 228 MEGACAM.g.28 dep 26.460 -0.15 - - - - - 2 + 229 MEGACAM.g.29 dep 26.460 -0.15 - - - - - 2 + 230 MEGACAM.g.30 dep 26.460 -0.15 - - - - - 2 + 231 MEGACAM.g.31 dep 26.460 -0.15 - - - - - 2 + 232 MEGACAM.g.32 dep 26.460 -0.15 - - - - - 2 + 233 MEGACAM.g.33 dep 26.460 -0.15 - - - - - 2 + 234 MEGACAM.g.34 dep 26.460 -0.15 - - - - - 2 + 235 MEGACAM.g.35 dep 26.460 -0.15 - - - - - 2 + 236 MEGACAM.g.36 dep 26.460 -0.15 - - - - - 2 + 237 MEGACAM.g.37 dep 26.460 -0.15 - - - - - 2 + 238 MEGACAM.g.38 dep 26.460 -0.15 - - - - - 2 + 239 MEGACAM.g.39 dep 26.460 -0.15 - - - - - 2 + + 300 MEGACAM.r.00 dep 25.978 -0.10 - - - - - 3 + 301 MEGACAM.r.01 dep 25.978 -0.10 - - - - - 3 + 302 MEGACAM.r.02 dep 25.978 -0.10 - - - - - 3 + 303 MEGACAM.r.03 dep 25.978 -0.10 - - - - - 3 + 304 MEGACAM.r.04 dep 25.978 -0.10 - - - - - 3 + 305 MEGACAM.r.05 dep 25.978 -0.10 - - - - - 3 + 306 MEGACAM.r.06 dep 25.978 -0.10 - - - - - 3 + 307 MEGACAM.r.07 dep 25.978 -0.10 - - - - - 3 + 308 MEGACAM.r.08 dep 25.978 -0.10 - - - - - 3 + 309 MEGACAM.r.09 dep 25.978 -0.10 - - - - - 3 + 310 MEGACAM.r.10 dep 25.978 -0.10 - - - - - 3 + 311 MEGACAM.r.11 dep 25.978 -0.10 - - - - - 3 + 312 MEGACAM.r.12 dep 25.978 -0.10 - - - - - 3 + 313 MEGACAM.r.13 dep 25.978 -0.10 - - - - - 3 + 314 MEGACAM.r.14 dep 25.978 -0.10 - - - - - 3 + 315 MEGACAM.r.15 dep 25.978 -0.10 - - - - - 3 + 316 MEGACAM.r.16 dep 25.978 -0.10 - - - - - 3 + 317 MEGACAM.r.17 dep 25.978 -0.10 - - - - - 3 + 318 MEGACAM.r.18 dep 25.978 -0.10 - - - - - 3 + 319 MEGACAM.r.19 dep 25.978 -0.10 - - - - - 3 + 320 MEGACAM.r.20 dep 25.978 -0.10 - - - - - 3 + 321 MEGACAM.r.21 dep 25.978 -0.10 - - - - - 3 + 322 MEGACAM.r.22 dep 25.978 -0.10 - - - - - 3 + 323 MEGACAM.r.23 dep 25.978 -0.10 - - - - - 3 + 324 MEGACAM.r.24 dep 25.978 -0.10 - - - - - 3 + 325 MEGACAM.r.25 dep 25.978 -0.10 - - - - - 3 + 326 MEGACAM.r.26 dep 25.978 -0.10 - - - - - 3 + 327 MEGACAM.r.27 dep 25.978 -0.10 - - - - - 3 + 328 MEGACAM.r.28 dep 25.978 -0.10 - - - - - 3 + 329 MEGACAM.r.29 dep 25.978 -0.10 - - - - - 3 + 330 MEGACAM.r.30 dep 25.978 -0.10 - - - - - 3 + 331 MEGACAM.r.31 dep 25.978 -0.10 - - - - - 3 + 332 MEGACAM.r.32 dep 25.978 -0.10 - - - - - 3 + 333 MEGACAM.r.33 dep 25.978 -0.10 - - - - - 3 + 334 MEGACAM.r.34 dep 25.978 -0.10 - - - - - 3 + 335 MEGACAM.r.35 dep 25.978 -0.10 - - - - - 3 + 336 MEGACAM.r.36 dep 25.978 -0.10 - - - - - 3 + 337 MEGACAM.r.37 dep 25.978 -0.10 - - - - - 3 + 338 MEGACAM.r.38 dep 25.978 -0.10 - - - - - 3 + 339 MEGACAM.r.39 dep 25.978 -0.10 - - - - - 3 + + 400 MEGACAM.i.00 dep 25.744 -0.04 - - - - - 4 + 401 MEGACAM.i.01 dep 25.744 -0.04 - - - - - 4 + 402 MEGACAM.i.02 dep 25.744 -0.04 - - - - - 4 + 403 MEGACAM.i.03 dep 25.744 -0.04 - - - - - 4 + 404 MEGACAM.i.04 dep 25.744 -0.04 - - - - - 4 + 405 MEGACAM.i.05 dep 25.744 -0.04 - - - - - 4 + 406 MEGACAM.i.06 dep 25.744 -0.04 - - - - - 4 + 407 MEGACAM.i.07 dep 25.744 -0.04 - - - - - 4 + 408 MEGACAM.i.08 dep 25.744 -0.04 - - - - - 4 + 409 MEGACAM.i.09 dep 25.744 -0.04 - - - - - 4 + 410 MEGACAM.i.10 dep 25.744 -0.04 - - - - - 4 + 411 MEGACAM.i.11 dep 25.744 -0.04 - - - - - 4 + 412 MEGACAM.i.12 dep 25.744 -0.04 - - - - - 4 + 413 MEGACAM.i.13 dep 25.744 -0.04 - - - - - 4 + 414 MEGACAM.i.14 dep 25.744 -0.04 - - - - - 4 + 415 MEGACAM.i.15 dep 25.744 -0.04 - - - - - 4 + 416 MEGACAM.i.16 dep 25.744 -0.04 - - - - - 4 + 417 MEGACAM.i.17 dep 25.744 -0.04 - - - - - 4 + 418 MEGACAM.i.18 dep 25.744 -0.04 - - - - - 4 + 419 MEGACAM.i.19 dep 25.744 -0.04 - - - - - 4 + 420 MEGACAM.i.20 dep 25.744 -0.04 - - - - - 4 + 421 MEGACAM.i.21 dep 25.744 -0.04 - - - - - 4 + 422 MEGACAM.i.22 dep 25.744 -0.04 - - - - - 4 + 423 MEGACAM.i.23 dep 25.744 -0.04 - - - - - 4 + 424 MEGACAM.i.24 dep 25.744 -0.04 - - - - - 4 + 425 MEGACAM.i.25 dep 25.744 -0.04 - - - - - 4 + 426 MEGACAM.i.26 dep 25.744 -0.04 - - - - - 4 + 427 MEGACAM.i.27 dep 25.744 -0.04 - - - - - 4 + 428 MEGACAM.i.28 dep 25.744 -0.04 - - - - - 4 + 429 MEGACAM.i.29 dep 25.744 -0.04 - - - - - 4 + 430 MEGACAM.i.30 dep 25.744 -0.04 - - - - - 4 + 431 MEGACAM.i.31 dep 25.744 -0.04 - - - - - 4 + 432 MEGACAM.i.32 dep 25.744 -0.04 - - - - - 4 + 433 MEGACAM.i.33 dep 25.744 -0.04 - - - - - 4 + 434 MEGACAM.i.34 dep 25.744 -0.04 - - - - - 4 + 435 MEGACAM.i.35 dep 25.744 -0.04 - - - - - 4 + 436 MEGACAM.i.36 dep 25.744 -0.04 - - - - - 4 + 437 MEGACAM.i.37 dep 25.744 -0.04 - - - - - 4 + 438 MEGACAM.i.38 dep 25.744 -0.04 - - - - - 4 + 439 MEGACAM.i.39 dep 25.744 -0.04 - - - - - 4 + + 500 MEGACAM.z.00 dep 24.800 -0.03 - - - - - 5 + 501 MEGACAM.z.01 dep 24.800 -0.03 - - - - - 5 + 502 MEGACAM.z.02 dep 24.800 -0.03 - - - - - 5 + 503 MEGACAM.z.03 dep 24.800 -0.03 - - - - - 5 + 504 MEGACAM.z.04 dep 24.800 -0.03 - - - - - 5 + 505 MEGACAM.z.05 dep 24.800 -0.03 - - - - - 5 + 506 MEGACAM.z.06 dep 24.800 -0.03 - - - - - 5 + 507 MEGACAM.z.07 dep 24.800 -0.03 - - - - - 5 + 508 MEGACAM.z.08 dep 24.800 -0.03 - - - - - 5 + 509 MEGACAM.z.09 dep 24.800 -0.03 - - - - - 5 + 510 MEGACAM.z.10 dep 24.800 -0.03 - - - - - 5 + 511 MEGACAM.z.11 dep 24.800 -0.03 - - - - - 5 + 512 MEGACAM.z.12 dep 24.800 -0.03 - - - - - 5 + 513 MEGACAM.z.13 dep 24.800 -0.03 - - - - - 5 + 514 MEGACAM.z.14 dep 24.800 -0.03 - - - - - 5 + 515 MEGACAM.z.15 dep 24.800 -0.03 - - - - - 5 + 516 MEGACAM.z.16 dep 24.800 -0.03 - - - - - 5 + 517 MEGACAM.z.17 dep 24.800 -0.03 - - - - - 5 + 518 MEGACAM.z.18 dep 24.800 -0.03 - - - - - 5 + 519 MEGACAM.z.19 dep 24.800 -0.03 - - - - - 5 + 520 MEGACAM.z.20 dep 24.800 -0.03 - - - - - 5 + 521 MEGACAM.z.21 dep 24.800 -0.03 - - - - - 5 + 522 MEGACAM.z.22 dep 24.800 -0.03 - - - - - 5 + 523 MEGACAM.z.23 dep 24.800 -0.03 - - - - - 5 + 524 MEGACAM.z.24 dep 24.800 -0.03 - - - - - 5 + 525 MEGACAM.z.25 dep 24.800 -0.03 - - - - - 5 + 526 MEGACAM.z.26 dep 24.800 -0.03 - - - - - 5 + 527 MEGACAM.z.27 dep 24.800 -0.03 - - - - - 5 + 528 MEGACAM.z.28 dep 24.800 -0.03 - - - - - 5 + 529 MEGACAM.z.29 dep 24.800 -0.03 - - - - - 5 + 530 MEGACAM.z.30 dep 24.800 -0.03 - - - - - 5 + 531 MEGACAM.z.31 dep 24.800 -0.03 - - - - - 5 + 532 MEGACAM.z.32 dep 24.800 -0.03 - - - - - 5 + 533 MEGACAM.z.33 dep 24.800 -0.03 - - - - - 5 + 534 MEGACAM.z.34 dep 24.800 -0.03 - - - - - 5 + 535 MEGACAM.z.35 dep 24.800 -0.03 - - - - - 5 + 536 MEGACAM.z.36 dep 24.800 -0.03 - - - - - 5 + 537 MEGACAM.z.37 dep 24.800 -0.03 - - - - - 5 + 538 MEGACAM.z.38 dep 24.800 -0.03 - - - - - 5 + 539 MEGACAM.z.39 dep 24.800 -0.03 - - - - - 5 + +# cfh12k photcodes + 140 CFH12K.B.00 dep 26.000 -0.15 - - - - - 1 + 141 CFH12K.B.01 dep 26.000 -0.15 - - - - - 1 + 142 CFH12K.B.02 dep 26.000 -0.15 - - - - - 1 + 143 CFH12K.B.03 dep 26.000 -0.15 - - - - - 1 + 144 CFH12K.B.04 dep 26.000 -0.15 - - - - - 1 + 145 CFH12K.B.05 dep 26.000 -0.15 - - - - - 1 + 146 CFH12K.B.06 dep 26.000 -0.15 - - - - - 1 + 147 CFH12K.B.07 dep 26.000 -0.15 - - - - - 1 + 148 CFH12K.B.08 dep 26.000 -0.15 - - - - - 1 + 149 CFH12K.B.09 dep 26.000 -0.15 - - - - - 1 + 150 CFH12K.B.10 dep 26.000 -0.15 - - - - - 1 + 151 CFH12K.B.11 dep 26.000 -0.15 - - - - - 1 + + 240 CFH12K.V.00 dep 26.150 -0.12 - - - - - 2 + 241 CFH12K.V.01 dep 26.150 -0.12 - - - - - 2 + 242 CFH12K.V.02 dep 26.150 -0.12 - - - - - 2 + 243 CFH12K.V.03 dep 26.150 -0.12 - - - - - 2 + 244 CFH12K.V.04 dep 26.150 -0.12 - - - - - 2 + 245 CFH12K.V.05 dep 26.150 -0.12 - - - - - 2 + 246 CFH12K.V.06 dep 26.150 -0.12 - - - - - 2 + 247 CFH12K.V.07 dep 26.150 -0.12 - - - - - 2 + 248 CFH12K.V.08 dep 26.150 -0.12 - - - - - 2 + 249 CFH12K.V.09 dep 26.150 -0.12 - - - - - 2 + 250 CFH12K.V.10 dep 26.150 -0.12 - - - - - 2 + 251 CFH12K.V.11 dep 26.150 -0.12 - - - - - 2 + + 340 CFH12K.R.00 dep 26.190 -0.09 - - - - - 3 + 341 CFH12K.R.01 dep 26.190 -0.09 - - - - - 3 + 342 CFH12K.R.02 dep 26.190 -0.09 - - - - - 3 + 343 CFH12K.R.03 dep 26.190 -0.09 - - - - - 3 + 344 CFH12K.R.04 dep 26.190 -0.09 - - - - - 3 + 345 CFH12K.R.05 dep 26.190 -0.09 - - - - - 3 + 346 CFH12K.R.06 dep 26.190 -0.09 - - - - - 3 + 347 CFH12K.R.07 dep 26.190 -0.09 - - - - - 3 + 348 CFH12K.R.08 dep 26.190 -0.09 - - - - - 3 + 349 CFH12K.R.09 dep 26.190 -0.09 - - - - - 3 + 350 CFH12K.R.10 dep 26.190 -0.09 - - - - - 3 + 351 CFH12K.R.11 dep 26.190 -0.09 - - - - - 3 + + 440 CFH12K.I.00 dep 26.135 -0.04 - - - - - 4 + 441 CFH12K.I.01 dep 26.135 -0.04 - - - - - 4 + 442 CFH12K.I.02 dep 26.135 -0.04 - - - - - 4 + 443 CFH12K.I.03 dep 26.135 -0.04 - - - - - 4 + 444 CFH12K.I.04 dep 26.135 -0.04 - - - - - 4 + 445 CFH12K.I.05 dep 26.135 -0.04 - - - - - 4 + 446 CFH12K.I.06 dep 26.135 -0.04 - - - - - 4 + 447 CFH12K.I.07 dep 26.135 -0.04 - - - - - 4 + 448 CFH12K.I.08 dep 26.135 -0.04 - - - - - 4 + 449 CFH12K.I.09 dep 26.135 -0.04 - - - - - 4 + 450 CFH12K.I.10 dep 26.135 -0.04 - - - - - 4 + 451 CFH12K.I.11 dep 26.135 -0.04 - - - - - 4 + + 540 CFH12K.Z.00 dep 25.83 -0.03 - - - - - 5 + 541 CFH12K.Z.01 dep 25.83 -0.03 - - - - - 5 + 542 CFH12K.Z.02 dep 25.83 -0.03 - - - - - 5 + 543 CFH12K.Z.03 dep 25.83 -0.03 - - - - - 5 + 544 CFH12K.Z.04 dep 25.83 -0.03 - - - - - 5 + 545 CFH12K.Z.05 dep 25.83 -0.03 - - - - - 5 + 546 CFH12K.Z.06 dep 25.83 -0.03 - - - - - 5 + 547 CFH12K.Z.07 dep 25.83 -0.03 - - - - - 5 + 548 CFH12K.Z.08 dep 25.83 -0.03 - - - - - 5 + 549 CFH12K.Z.09 dep 25.83 -0.03 - - - - - 5 + 550 CFH12K.Z.10 dep 25.83 -0.03 - - - - - 5 + 551 CFH12K.Z.11 dep 25.83 -0.03 - - - - - 5 + + 600 CFH12K.Ha.00 dep 25.000 0.04 - - - - - 5 + 601 CFH12K.Ha.01 dep 25.000 0.04 - - - - - 5 + 602 CFH12K.Ha.02 dep 25.000 0.04 - - - - - 5 + 603 CFH12K.Ha.03 dep 25.000 0.04 - - - - - 5 + 604 CFH12K.Ha.04 dep 25.000 0.04 - - - - - 5 + 605 CFH12K.Ha.05 dep 25.000 0.04 - - - - - 5 + 606 CFH12K.Ha.06 dep 25.000 0.04 - - - - - 5 + 607 CFH12K.Ha.07 dep 25.000 0.04 - - - - - 5 + 608 CFH12K.Ha.08 dep 25.000 0.04 - - - - - 5 + 609 CFH12K.Ha.09 dep 25.000 0.04 - - - - - 5 + 610 CFH12K.Ha.10 dep 25.000 0.04 - - - - - 5 + 611 CFH12K.Ha.11 dep 25.000 0.04 - - - - - 5 + + 612 CFH12K.HaOff.00 dep 25.000 0.04 - - - - - 5 + 613 CFH12K.HaOff.01 dep 25.000 0.04 - - - - - 5 + 614 CFH12K.HaOff.02 dep 25.000 0.04 - - - - - 5 + 615 CFH12K.HaOff.03 dep 25.000 0.04 - - - - - 5 + 616 CFH12K.HaOff.04 dep 25.000 0.04 - - - - - 5 + 617 CFH12K.HaOff.05 dep 25.000 0.04 - - - - - 5 + 618 CFH12K.HaOff.06 dep 25.000 0.04 - - - - - 5 + 619 CFH12K.HaOff.07 dep 25.000 0.04 - - - - - 5 + 620 CFH12K.HaOff.08 dep 25.000 0.04 - - - - - 5 + 621 CFH12K.HaOff.09 dep 25.000 0.04 - - - - - 5 + 622 CFH12K.HaOff.10 dep 25.000 0.04 - - - - - 5 + 623 CFH12K.HaOff.11 dep 25.000 0.04 - - - - - 5 + 624 CFH12K.CN.00 dep 25.000 0.04 - - - - - 5 + 625 CFH12K.CN.01 dep 25.000 0.04 - - - - - 5 + 626 CFH12K.CN.02 dep 25.000 0.04 - - - - - 5 + 627 CFH12K.CN.03 dep 25.000 0.04 - - - - - 5 + 628 CFH12K.CN.04 dep 25.000 0.04 - - - - - 5 + 629 CFH12K.CN.05 dep 25.000 0.04 - - - - - 5 + 630 CFH12K.CN.06 dep 25.000 0.04 - - - - - 5 + 631 CFH12K.CN.07 dep 25.000 0.04 - - - - - 5 + 632 CFH12K.CN.08 dep 25.000 0.04 - - - - - 5 + 633 CFH12K.CN.09 dep 25.000 0.04 - - - - - 5 + 634 CFH12K.CN.10 dep 25.000 0.04 - - - - - 5 + 635 CFH12K.CN.11 dep 25.000 0.04 - - - - - 5 + 636 CFH12K.TiO.00 dep 25.000 0.04 - - - - - 5 + 637 CFH12K.TiO.01 dep 25.000 0.04 - - - - - 5 + 638 CFH12K.TiO.02 dep 25.000 0.04 - - - - - 5 + 639 CFH12K.TiO.03 dep 25.000 0.04 - - - - - 5 + 640 CFH12K.TiO.04 dep 25.000 0.04 - - - - - 5 + 641 CFH12K.TiO.05 dep 25.000 0.04 - - - - - 5 + 642 CFH12K.TiO.06 dep 25.000 0.04 - - - - - 5 + 643 CFH12K.TiO.07 dep 25.000 0.04 - - - - - 5 + 644 CFH12K.TiO.08 dep 25.000 0.04 - - - - - 5 + 645 CFH12K.TiO.09 dep 25.000 0.04 - - - - - 5 + 646 CFH12K.TiO.10 dep 25.000 0.04 - - - - - 5 + 647 CFH12K.TiO.11 dep 25.000 0.04 - - - - - 5 + 648 CFH12K.NB920.00 dep 25.000 0.04 - - - - - 5 + 649 CFH12K.NB920.01 dep 25.000 0.04 - - - - - 5 + 650 CFH12K.NB920.02 dep 25.000 0.04 - - - - - 5 + 651 CFH12K.NB920.03 dep 25.000 0.04 - - - - - 5 + 652 CFH12K.NB920.04 dep 25.000 0.04 - - - - - 5 + 653 CFH12K.NB920.05 dep 25.000 0.04 - - - - - 5 + 654 CFH12K.NB920.06 dep 25.000 0.04 - - - - - 5 + 655 CFH12K.NB920.07 dep 25.000 0.04 - - - - - 5 + 678 CFH12K.NB920.08 dep 25.000 0.04 - - - - - 5 + 679 CFH12K.NB920.09 dep 25.000 0.04 - - - - - 5 + 680 CFH12K.NB920.10 dep 25.000 0.04 - - - - - 5 + 681 CFH12K.NB920.11 dep 25.000 0.04 - - - - - 5 + 682 CFH12K.B2F.00 dep 25.000 0.04 - - - - - 5 + 683 CFH12K.B2F.01 dep 25.000 0.04 - - - - - 5 + 684 CFH12K.B2F.02 dep 25.000 0.04 - - - - - 5 + 685 CFH12K.B2F.03 dep 25.000 0.04 - - - - - 5 + 686 CFH12K.B2F.04 dep 25.000 0.04 - - - - - 5 + 687 CFH12K.B2F.05 dep 25.000 0.04 - - - - - 5 + 688 CFH12K.B2F.06 dep 25.000 0.04 - - - - - 5 + 689 CFH12K.B2F.07 dep 25.000 0.04 - - - - - 5 + 690 CFH12K.B2F.08 dep 25.000 0.04 - - - - - 5 + 691 CFH12K.B2F.09 dep 25.000 0.04 - - - - - 5 + 692 CFH12K.B2F.10 dep 25.000 0.04 - - - - - 5 + 693 CFH12K.B2F.11 dep 25.000 0.04 - - - - - 5 + + 3200 ISP-Apogee-01.g dep 19.25 0.00 - - - - - 1 + 3300 ISP-Apogee-01.r dep 19.15 0.00 - - - - - 2 + 3400 ISP-Apogee-01.i dep 18.50 0.00 - - - - - 3 + 3500 ISP-Apogee-01.z dep 17.25 0.00 - - - - - 4 + 3600 ISP-Apogee-01.y dep 14.15 0.00 - - - - - 5 Index: /branches/rel-1-1/ippconfig/dvo.site.in =================================================================== --- /branches/rel-1-1/ippconfig/dvo.site.in (revision 12167) +++ /branches/rel-1-1/ippconfig/dvo.site.in (revision 12167) @@ -0,0 +1,30 @@ + +CONFDIR @IPP_CONFIG_DIR@ +CAMERA default + +# location of DVO database tables +CATDIR default + +# location of possible data sources +2MASS_DIR_AS NONE +2MASS_DIR_DR2 NONE +GSCDIR NONE +USNO_A_DIR NONE +USNO_B_DIR NONE +TYCHO_DIR NONE + +PHOTCODE_FILE $CONFDIR/dvo.photcodes +GSCFILE $CONFDIR/GSCregions.tbl +CATMODE MEF +CATFORMAT ELIXIR +SKY_DEPTH +# SKY_TABLE this may be used to override GSCFILE +ZERO_PT 25.0 + +# access control for client/server addstar mode +# PASSWORD +# HOSTNAME +# VALID_IP + +# load the camera-specific configuration files +input $CONFDIR/dvo.cameras/$CAMERA.config Index: /branches/rel-1-1/ippconfig/gpc1/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/gpc1/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/gpc1/camera.config (revision 12167) @@ -0,0 +1,82 @@ +# Camera configuration file for GPC1: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR gpc1/format_raw.config +END + + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + 64 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY01 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY02 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY03 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY04 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY05 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY06 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY07 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY10 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY11 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY12 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY13 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY14 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY15 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY16 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY17 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY20 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY21 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY22 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY23 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY24 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY25 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY26 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY27 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY30 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY31 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY32 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY33 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY34 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY35 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY36 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY37 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY40 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY41 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY42 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY43 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY44 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY45 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY46 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY47 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY50 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY51 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY52 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY53 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY54 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY55 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY56 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY57 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY60 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY61 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY62 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY63 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY64 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY65 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY66 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY67 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY70 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY71 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY72 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY73 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY74 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY75 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY76 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +# XY77 STR xy00 xy01 xy02 xy03 xy04 xy05 xy06 xy07 xy10 xy11 xy12 xy13 xy14 xy15 xy16 xy17 xy20 xy21 xy22 xy23 xy24 xy25 xy26 xy27 xy30 xy31 xy32 xy33 xy34 xy35 xy36 xy37 xy40 xy41 xy42 xy43 xy44 xy45 xy46 xy47 xy50 xy51 xy52 xy53 xy54 xy55 xy56 xy57 xy60 xy61 xy62 xy63 xy64 xy65 xy66 xy67 xy70 xy71 xy72 xy73 xy74 xy75 xy76 xy77 +END + + +# Recipe options +RECIPES METADATA + PHASE2 STR phase2.config # Phase 2 recipe details +# PSPHOT STR psphot.config # psphot details +END Index: /branches/rel-1-1/ippconfig/gpc1/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/gpc1/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/gpc1/format_raw.config (revision 12167) @@ -0,0 +1,175 @@ +# The raw GPC data comes off the telescope with each of the chips stored in separate files + +# How to identify this type +RULE METADATA +# TELESCOP STR PS1 +# DETECTOR STR GPC1 + EXTEND BOOL T + NEXTEND S32 64 + NAMPS S32 64 +END + +# How to read this data +FILE METADATA + PHU STR CHIP # The FITS file represents a single chip + EXTENSIONS STR CELL # The extensions represent cells + FPA.NAME STR NAMPS # A PHU keyword for unique identifier within the hierarchy level + CHIP.NAME STR NAMPS # An extension keyword for unique identifier +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, type + xy00 STR xy00:pitch10u + xy01 STR xy01:pitch10u + xy02 STR xy02:pitch10u + xy03 STR xy03:pitch10u + xy04 STR xy04:pitch10u + xy05 STR xy05:pitch10u + xy06 STR xy06:pitch10u + xy07 STR xy07:pitch10u + xy10 STR xy10:pitch10u + xy11 STR xy11:pitch10u + xy12 STR xy12:pitch10u + xy13 STR xy13:pitch10u + xy14 STR xy14:pitch10u + xy15 STR xy15:pitch10u + xy16 STR xy16:pitch10u + xy17 STR xy17:pitch10u + xy20 STR xy20:pitch10u + xy21 STR xy21:pitch10u + xy22 STR xy22:pitch10u + xy23 STR xy23:pitch10u + xy24 STR xy24:pitch10u + xy25 STR xy25:pitch10u + xy26 STR xy26:pitch10u + xy27 STR xy27:pitch10u + xy30 STR xy30:pitch10u + xy31 STR xy31:pitch10u + xy32 STR xy32:pitch10u + xy33 STR xy33:pitch10u + xy34 STR xy34:pitch10u + xy35 STR xy35:pitch10u + xy36 STR xy36:pitch10u + xy37 STR xy37:pitch10u + xy40 STR xy40:pitch10u + xy41 STR xy41:pitch10u + xy42 STR xy42:pitch10u + xy43 STR xy43:pitch10u + xy44 STR xy44:pitch10u + xy45 STR xy45:pitch10u + xy46 STR xy46:pitch10u + xy47 STR xy47:pitch10u + xy50 STR xy50:pitch10u + xy51 STR xy51:pitch10u + xy52 STR xy52:pitch10u + xy53 STR xy53:pitch10u + xy54 STR xy54:pitch10u + xy55 STR xy55:pitch10u + xy56 STR xy56:pitch10u + xy57 STR xy57:pitch10u + xy60 STR xy60:pitch10u + xy61 STR xy61:pitch10u + xy62 STR xy62:pitch10u + xy63 STR xy63:pitch10u + xy64 STR xy64:pitch10u + xy65 STR xy65:pitch10u + xy66 STR xy66:pitch10u + xy67 STR xy67:pitch10u + xy70 STR xy70:pitch10u + xy71 STR xy71:pitch10u + xy72 STR xy72:pitch10u + xy73 STR xy73:pitch10u + xy74 STR xy74:pitch10u + xy75 STR xy75:pitch10u + xy76 STR xy76:pitch10u + xy77 STR xy77:pitch10u +END + +# Specify the cell data +CELLS METADATA + pitch10u METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [575:606,1:594] + CELL.TRIMSEC STR [1:574,1:594] + # CELL.BIASSEC STR BIASSEC + # CELL.TRIMSEC STR DATASEC + END + + # This is just in here for fun + pitch12u METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [1:10,1:512];[523:574,1:512] + CELL.TRIMSEC STR [11:522,1:512] + # CELL.BIASSEC STR BIASSEC + # CELL.TRIMSEC STR TRIMSEC + END +END + + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM + CELL.X0 STR IMNPIX1 + CELL.Y0 STR IMNPIX2 + CELL.XPARITY STR LTM1_1 + CELL.YPARITY STR LTM2_2 + CELL.SATURATION STR SATURATE +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.AIRMASS F32 0.0 + FPA.FILTER STR NONE + FPA.POSANGLE F32 0.0 + FPA.RA STR 0:0:0 + FPA.DEC STR 0:0:0 + FPA.RADECSYS STR ICRS + FPA.NAME S32 12345 + CELL.EXPOSURE F32 0.0 + CELL.DARKTIME F32 0.0 + CELL.GAIN F32 1.0 + CELL.READNOISE F32 0.0 + CELL.READDIR S32 1 + CELL.BAD S32 0 + CELL.TIMESYS STR UTC + CELL.TIME STR 2005-11-23T12:34:56.78 +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP,CELL +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP,CELL + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). + +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.BINNING STR TOGETHER + CELL.X0 STR FORTRAN + CELL.Y0 STR FORTRAN +END + +# Recipe options +RECIPES METADATA + PHASE2 STR phase2.config # Phase 2 recipe details +END + +# How to get the supplementary stuff: mask and weight +SUPPLEMENTARY METADATA + MASK.SOURCE STR FILE # Source type for mask: EXT | FILE + MASK.NAME STR %a_mask.fits # Name for mask extension or filename + WEIGHT.SOURCE STR FILE # Source type for weight: EXT | FILE + WEIGHT.NAME STR %a_weight.fits # Name for weight extension or filename +END Index: /branches/rel-1-1/ippconfig/ipprc.config.in =================================================================== --- /branches/rel-1-1/ippconfig/ipprc.config.in (revision 12167) +++ /branches/rel-1-1/ippconfig/ipprc.config.in (revision 12167) @@ -0,0 +1,52 @@ +### Example .ipprc file + +# Default search path for configuration files +PATH STR @IPP_CONFIG_DIR@:$HOME/.ipp:. + +# place your data directories here and refer to as path://PATH/remainder +DATAPATH METADATA + ALALA STR /data/alala.0/ + ESSENCE STR /data/sn7/ipp/ + SIMTEST STR /path/to/simtest/ +END + +### Database configuration +DBSERVER STR alala # Database host name (for psDBInit) +DBNAME STR ipp # Database name (for psDBInit) +DBUSER STR XXX # Database user name (for psDBInit) +DBPASSWORD STR XXX # Database password (for psDBInit) + +### Setups for each camera system +CAMERAS METADATA + MEGACAM STR megacam/camera.config + ISP-Apogee STR isp/camera.config +# CTIO_MOSAIC2 STR ctio_mosaic2/camera.config # CTIO MOSAIC2 camera, for ESSENCE +# UCAM STR ucam/camera.config +# GPC1 STR gpc1/camera.config +# LRIS_BLUE STR lris_blue/camera.config +# LRIS_RED STR lris_red/camera.config + SIMTEST STR simtest/camera.config + SIMPLE STR simple/camera.config +END + +### psLib setup +#TIME STR /home/mithrandir/price/pan-starrs/jhroot/i686-pc-linux-gnu/etc/pslib/psTime.config # Time configuration file +LOGLEVEL S32 9 # Logging level; 3=INFO +LOGFORMAT STR THLNM # Log format +LOGDEST STR STDERR # Log destination +TRACEDEST STR STDERR # Trace destination +TRACE METADATA # Trace levels + err S32 10 +# place default trace lines here +# example: +# psLib.db S32 10 +END + +RECIPES METADATA # Site-level recipes + PPIMAGE STR recipes/ppImage.config # Image reduction + PPMERGE STR recipes/ppMerge.config # Image combination + PPSTATS STR recipes/ppStats.config # Image statistics + PSPHOT STR recipes/psphot.config # Photometry + PSASTRO STR recipes/psastro.config # Astrometry + PPSTAC STR recipes/ppStac.config # Combination +END Index: /branches/rel-1-1/ippconfig/isp/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/isp/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/ippconfig/isp/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/isp/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/Makefile.am (revision 12167) @@ -0,0 +1,22 @@ + +installdir = $(datadir)/ippconfig/isp + +install_files = \ + camera.config \ + format.config \ + cmp.config \ + cmf.config \ + ppImage.config \ + ppMerge.config \ + ppStats.config \ + psastro.config \ + psphot.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/isp/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/camera.config (revision 12167) @@ -0,0 +1,145 @@ +# Camera configuration file for the Pan-STARRS Imaging Sky Probe + +# File formats that we know about +FORMATS METADATA + ISP STR isp/format.config + CMP STR isp/cmp.config + CMF STR isp/cmf.config +END + + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + Chip STR Cell +END + +# Recipe options +RECIPES METADATA + PSPHOT STR isp/psphot.config # psphot details + PSASTRO STR isp/psastro.config # psastro details + PPIMAGE STR isp/ppImage.config # Recipes for ppImage + PPMERGE STR isp/ppMerge.config # Recipes for ppMerge +END + +FILTER.ID METADATA + g STR g + r STR r + i STR i + z STR z + y STR y +END + + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV IMFILE.MEANSTDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN + + BIAS LIMITS * 0 2 10 0.5 1.0 10 0.5 3 3 0 0 0 + DARK LIMITS * 0 2 10 0.5 1.0 10 0.5 3 3 0 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 0 + SHUTTER LIMITS * 0 0 0 0 0 0 0 0 0 0 0 20.0 + # need to adjust these to get a decent clipping + + FLAT MULTI + FLAT LIMITS * 0 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 0 3 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + + +FILERULES METADATA + PSASTRO.INPUT STR PSASTRO.INPUT.CMF + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMF + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + PPIMAGE.BIAS INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.DARK INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.FLAT INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.SHUTTER INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.MASK INPUT mask.fits NONE NONE NONE CHIP IMAGE + # PPIMAGE.BIAS INPUT bias.fits NONE NONE NONE CHIP IMAGE + # PPIMAGE.DARK INPUT dark.fits NONE NONE NONE CHIP IMAGE + # PPIMAGE.FLAT INPUT flat.fits NONE NONE NONE CHIP IMAGE + + PPARITH.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + + PSPHOT.INPUT INPUT none.fits NONE NONE NONE CHIP IMAGE + PSPHOT.PSF.LOAD INPUT none.psf NONE NONE NONE CHIP PSF + + PSASTRO.INPUT.CMP INPUT none.fits NONE NONE PHU FPA CMP + PSASTRO.INPUT.CMF INPUT none.fits NONE SMPDATA PHU FPA CMF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.TYPE FILE.LEVEL DATA.LEVEL FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.isp.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.mask.fits NONE NONE NONE MASK FPA FPA FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.wt.fits NONE NONE NONE WEIGHT FPA FPA FALSE NONE + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.chip.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + + PPIMAGE.BIN1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PPIMAGE.BIN2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE JPEG FPA FPA TRUE ISP + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE JPEG FPA FPA TRUE ISP + + PPARITH.OUTPUT OUTPUT {OUTPUT} NONE NONE NONE IMAGE FPA FPA TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE NONE NONE IMAGE FPA FPA TRUE ISP + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT} NONE NONE NONE RAW FPA FPA TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE NONE SX FPA FPA TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE NONE OBJ FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.cmp NONE NONE NONE CMP FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CMF FPA FPA TRUE NONE + PSPHOT.PSF.SAVE OUTPUT {OUTPUT}.psf NONE NONE NONE PSF FPA FPA TRUE NONE + + SOURCE.PLOT.MOMENTS OUTPUT {OUTPUT}.mnt.png NONE NONE NONE KAPA FPA FPA TRUE NONE + SOURCE.PLOT.PSFMODEL OUTPUT {OUTPUT}.psf.png NONE NONE NONE KAPA FPA FPA TRUE ISP + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.smp NONE NONE NONE CMP FPA FPA TRUE NONE + PSASTRO.OUTPUT.CMF OUTPUT {OUTPUT}.smf NONE SMPDATA PHU CMF FPA FPA TRUE NONE +END + +# FPA file defines properties of a possible input|output object +# user can set the filename (I|O), filename rules (O), or abstract source (@FILES, @DETDB) (I) +# user can set the extension name, if used +# user can set the file type (IMAGE, JPEG, RAW, SX, OBJ, CMP, CMF) : but these are not variable in most cases! +# user can set the file mode (READ, WRITE), but these must be set by the programmer +# user can set the file depth: only valid for output files +# user can set the data depth: must be >= file depth +# user can set the file format: only valid for newly created FPAs +# user can set the colormap, scaling method, scaling range (JPEG only) +# user can set the extension name for the data and header segments (CMF only) + +# known uses of the filename.xtra, extname.rule, and extname.xtra: +# extname.rule: used to construct output EXTNAME keys (CMF DATA) +# extname.xtra: used to construct output EXTNAME keys (CMF HEAD) + +# extname.rule: used to carry classID to DetDB (internal) +# filename.xtra: used to carry detID to DetDB (internal) + +# filename.xtra: used to carry arglist name (internal) Index: /branches/rel-1-1/ippconfig/isp/cmf.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/cmf.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/cmf.config (revision 12167) @@ -0,0 +1,84 @@ +# Pan-STARRS Imaging Sky Probe + +# How to identify this type +RULE METADATA + SIMPLE BOOL TRUE + NAXIS S32 0 + TELESCOP STR ISP-1 + INSTRUME STR ISP-Apogee + DETECTOR STR ISP-Apogee-01 + ISPCAMER STR Apogee U42 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR SEQID # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR Chip:Cell:amplifier + +# Specify the cell data +CELLS METADATA + amplifier METADATA + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC STR TRIMSEC + CELL.BIASSEC STR BIASSEC + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR OBSTYPE + FPA.FILTER STR FILTNAME + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.ALT STR ALT + FPA.AZ STR AZ + FPA.POSANGLE STR ROTANGLE + FPA.AIRMASS STR AIRMASS + FPA.TIME STR MJD-OBS + CHIP.TEMP STR CCDTEMP + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR MJD-OBS + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.XBIN STR XBIN + CELL.YBIN STR YBIN +# CELL.SATURATION STR SATURATE ### Currently set to 0 ??? + CELL.BAD STR BADLEVEL +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.TIMESYS STR UTC + CELL.SATURATION F32 65535 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 + CHIP.X0 S32 0 + CHIP.Y0 S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.X0 S32 0 + CELL.Y0 S32 0 +END + +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + +# PS Concepts to get from the database +DATABASE METADATA +# None. +END Index: /branches/rel-1-1/ippconfig/isp/cmp.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/cmp.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/cmp.config (revision 12167) @@ -0,0 +1,84 @@ +# Pan-STARRS Imaging Sky Probe + +# How to identify this type +RULE METADATA + SIMPLE BOOL FALSE + NAXIS S32 0 + TELESCOP STR ISP-1 + INSTRUME STR ISP-Apogee + DETECTOR STR ISP-Apogee-01 + ISPCAMER STR Apogee U42 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR SEQID # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR Chip:Cell:amplifier + +# Specify the cell data +CELLS METADATA + amplifier METADATA + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC STR TRIMSEC + CELL.BIASSEC STR BIASSEC + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR OBSTYPE + FPA.FILTER STR FILTNAME + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.ALT STR ALT + FPA.AZ STR AZ + FPA.POSANGLE STR ROTANGLE + FPA.AIRMASS STR AIRMASS + FPA.TIME STR MJD-OBS + CHIP.TEMP STR CCDTEMP + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR MJD-OBS + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.XBIN STR XBIN + CELL.YBIN STR YBIN +# CELL.SATURATION STR SATURATE ### Currently set to 0 ??? + CELL.BAD STR BADLEVEL +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.TIMESYS STR UTC + CELL.SATURATION F32 65535 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 + CHIP.X0 S32 0 + CHIP.Y0 S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.X0 S32 0 + CELL.Y0 S32 0 +END + +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + +# PS Concepts to get from the database +DATABASE METADATA +# None. +END Index: /branches/rel-1-1/ippconfig/isp/format.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/format.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/format.config (revision 12167) @@ -0,0 +1,92 @@ +# Pan-STARRS Imaging Sky Probe + +# How to identify this type +RULE METADATA + SIMPLE BOOL TRUE + NAXIS S32 2 + TELESCOP STR ISP-1 + INSTRUME STR ISP-Apogee + DETECTOR STR ISP-Apogee-01 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR SEQID # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR Chip:Cell:amplifier + +# Specify the cell data +CELLS METADATA + amplifier METADATA + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC STR TRIMSEC + CELL.BIASSEC STR BIASSEC + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.TELESCOPE STR TELESCOP + FPA.INSTRUMENT STR INSTRUME + FPA.DETECTOR STR DETECTOR + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR OBSTYPE + FPA.FILTERID STR FILTER + FPA.FILTER STR FILTER + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.ALT STR ALT + FPA.AZ STR AZ + FPA.POSANGLE STR ROTANGLE + FPA.AIRMASS STR AIRMASS + FPA.TIME STR MJD-OBS + FPA.EXPOSURE STR EXPTIME + CHIP.TEMP STR CCDTEMP + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR MJD-OBS + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +# CELL.SATURATION STR SATURATE ### Currently set to 0 ??? + CELL.BAD STR BADLEVEL +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CHIP.XSIZE S32 2048 + CHIP.YSIZE S32 2048 + CELL.XSIZE S32 2048 + CELL.YSIZE S32 2048 + FPA.TIMESYS STR UTC + CELL.SATURATION F32 65535 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 + CHIP.X0 S32 0 + CHIP.Y0 S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.X0 S32 0 + CELL.Y0 S32 0 +END + +FORMATS METADATA + FPA.RA STR DEGREES + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + +# PS Concepts to get from the database +DATABASE METADATA +# None. +END Index: /branches/rel-1-1/ippconfig/isp/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/ppImage.config (revision 12167) @@ -0,0 +1,69 @@ +### ppImage recipe configuration file + +# Inherit everything from the top-level recipe file, except for what's below. + +PHOTCODE.RULE STR {DETECTOR}.{FILTER.ID} + +# apply the following constraints when selecting a detrend image +DETREND.CONSTRAINTS METADATA + BIAS METADATA + END + DARK METADATA + END + SHUTTER METADATA + END + FLAT METADATA + FILTER STR FPA.FILTERID +# VERSION STR RAW + END + FRINGE METADATA + FILTER STR FPA.FILTERID +# AIRMASS STR FPA.AIRMASS +# TWILIGHT STR TWILIGHT:FPA.TIME + END +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom +PPIMAGE_OBDSFRP METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom, astrom +PPIMAGE_OBDSFRA METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL TRUE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe +PPIMAGE_OBDSFR METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END Index: /branches/rel-1-1/ippconfig/isp/ppMerge.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/ppMerge.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/ppMerge.config (revision 12167) @@ -0,0 +1,3 @@ +### ppImage recipe configuration file + +# Inherit everything from the top-level recipe file, except for what's below. Index: /branches/rel-1-1/ippconfig/isp/ppStats.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/ppStats.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/ppStats.config (revision 12167) @@ -0,0 +1,12 @@ +### ppStats recipe +SAMPLE F32 0.1 # Fraction of cell to sample +MASKVAL U8 0xff # Mask value to use for statistics + +# Define the outputs as MULTI +HEADER MULTI +CONCEPT MULTI +STAT MULTI + +# Values to return +STAT STR ROBUST_MEDIAN # Background estimator +STAT STR ROBUST_STDEV # Background standard deviation estimator Index: /branches/rel-1-1/ippconfig/isp/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/psastro.config (revision 12167) @@ -0,0 +1,45 @@ + +# astrometry matching parameters + +# nominal plate scale (microns / pixel) +# PSASTRO.PLATE.SCALE F32 13.5 +PSASTRO.PIXEL.SCALE F32 10.0 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -2.0 +PSASTRO.GRID.MAX.ANGLE F32 +2.0 +#PSASTRO.GRID.MIN.ANGLE F32 102.0 +#PSASTRO.GRID.MAX.ANGLE F32 104.0 +PSASTRO.GRID.DEL.ANGLE F32 0.25 +PSASTRO.GRID.MIN.SIGMA F32 5.0 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 10000. +PSASTRO.GRID.SCALE F32 500 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# pmAstromRadiusMatch +# use plate-scale to make this in pixels? +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +#PSASTRO.CHIP.NX S32 3 # fit order +#PSASTRO.CHIP.NY S32 3 # fit order +PSASTRO.CHIP.ORDER S32 3 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + +PSASTRO.MAX.ERROR F32 10.0 # max error in pixels +PSASTRO.MIN.NSTAR S32 10 # min fitted stars in solution + +MAG_MAX F32 10 +DVO.CATDIR STR /data/alala/ipp/ippRefs/catdir.synth.bright Index: /branches/rel-1-1/ippconfig/isp/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/isp/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/isp/psphot.config (revision 12167) @@ -0,0 +1,128 @@ + +SAVE.OUTPUT BOOL TRUE +#SAVE.BACKMDL BOOL TRUE +#SAVE.BACKGND BOOL TRUE +#SAVE.BACKSUB BOOL TRUE +SAVE.RESID BOOL TRUE +#SAVE.PSF BOOL TRUE + +#LOAD.PSF BOOL FALSE + +# image noise parameters +RDNOISE STR HD:RDNOISE # read-noise in electrons +GAIN STR HD:GAIN # electrons / DN +ZERO_POINT F32 25.000 # zero point used by DVO + +# background model : +BACKGROUND.XBIN S32 128 +BACKGROUND.YBIN S32 128 + +# masking parameters +XMIN F32 2 # minimum valid x-coord +XMAX F32 -2 # maximum valid x-coord +YMIN F32 2 # minimum valid y-coord +YMAX F32 -2 # maximum valid y-coord +SATURATION F32 50000 # saturation level on this chip +MIN_VALID_PIXEL F32 1 # saturation level on this chip + +# image statistics parameters +IMSTATS_NPIX S32 1000 # number of pixels to use for sky estimate boxes: + +# peak finding +PEAKS_SMOOTH_SIGMA F32 1.0 # smoothing kernel sigma in pixels +PEAKS_SMOOTH_NSIGMA F32 3.0 # smoothing kernel width in sigmas +PEAKS_NSIGMA_LIMIT F32 25.0 # peak significance threshold +PEAKS_NSIGMA_LIMIT_2 F32 5.0 # peak significance threshold + +# basic object statistics +SKY_INNER_RADIUS F32 15 # square annulus for local sky measurement +SKY_OUTER_RADIUS F32 25 # square annulus for local sky measurement +PSF_MOMENTS_RADIUS F32 3 # calculate initial source moments with this radius +PSF_SN_LIM F32 25 # minimum S/N for stars used for PSF model +PSF_CLUMP_NSIGMA F32 3 # size of PSF clump in image (use a larger number for images with large PSF variations) +PSF_MAX_NSTARS S32 300 # limit number of stars used for PSF model + +# PSF model parameters : choose the PSF model +# list as many PSF_MODEL options as desired +# PSF_MODEL MULTI +PSF_MODEL STR PS_MODEL_QGAUSS +# PSF_MODEL STR PS_MODEL_GAUSS +# PSF_MODEL STR PS_MODEL_PGAUSS +# PSF_MODEL STR PS_MODEL_TEST1 + +MOMENTS_SCALE F32 0.1 +MOMENTS_SN_MIN F32 10.0 +MOMENTS_SX_MAX F32 3.0 +MOMENTS_SY_MAX F32 3.0 +MOMENTS_AR_MAX F32 5.0 # maximum axial ratio: 1 / AR < (sx / sy) < AR + +PSF_FIT_RADIUS F32 9.0 # fitting radius for test PSF model +PSF_REF_RADIUS F32 11.0 # aperture magnitudes are scaled via + # curve-of-growth to this radius +# PSF-like source model parameters +PSF_FIT_NSIGMA F32 1.0 # significance for pixel included in fit +PSF_FIT_PADDING F32 2.0 # extra annulus to use for fit +PSF_SHAPE_NSIGMA F32 3.0 # max significance for shape variation +PSF_MIN_SN F32 2.0 # reject objects below this significance +PSF_MAX_CHI F32 50.0 # reject objects worse than this + +# EXTended source model parameters +EXT_MODEL STR PS_MODEL_PGAUSS +EXT_MIN_SN F32 50.0 # fit galaxies above this S/N limit +EXT_FIT_NSIGMA F32 1 # significance for pixel included in fit +EXT_FIT_PADDING F32 10 # extra annulus to use for fit +EXT_MOMENTS_RADIUS F32 9 + +FITMODE STR BLEND +DEBLEND_PEAK_FRACTION F32 0.1 +DEBLEND_SKY_NSIGMA F32 10.0 + +# APTREND STR CONSTANT +APTREND STR ALL +# APTREND STR SKYSAT_XY_LIN +# APTREND STR SKYSAT +# APTREND STR SKYBIAS +APTREND.XORDER S32 2 +APTREND.YORDER S32 2 +FULL_FIT_SN_LIM F32 50.0 +AP_MIN_SN F32 20.0 +MAX_AP_OFFSET F32 0.5 +CONSTANT_PHOTOMETRIC_WEIGHTS BOOL TRUE # Should the photometric code [currently only ensemblePSF] + # refuse to weight each pixel by it's significance? + +# test options + +# BREAK_POINT may be one of (PEAKS, MOMENTS, PSFMODEL, ENSEMBLE) +BREAK_POINT STR ENSEMBLE + +# PEAKS_OUTPUT_FILE STR peaks.dat +# MOMENTS_OUTPUT_FILE STR moments.dat +# ANALYSIS_REGION STR [1000:1600,2800:3400] +# POISSON_ERRORS BOOL TRUE +# SKY_BIAS F32 0.0 + +# PSFTREND must be a 2D polynomial +# the specified values are ignored but define the active components of the polynomial +PSF.TREND.MASK METADATA + NORDER_X S32 2 # number of x orders + NORDER_Y S32 2 # number of y orders + VAL_X00_Y00 F64 1 # polynomial coefficient + VAL_X01_Y00 F64 1 # polynomial coefficient + VAL_X00_Y01 F64 1 # polynomial coefficient + VAL_X02_Y00 F64 1 # polynomial coefficient + VAL_X01_Y01 F64 1 # polynomial coefficient + VAL_X00_Y02 F64 1 # polynomial coefficient + NELEMENTS S32 6 # number of unmasked components +END # folder for 4D polynomial + +# APTREND must be a 4D polynomial +# the specified values are ignored but define the active components of the polynomial +AP.TREND.MASK METADATA + NORDER_X S32 2 # number of x orders + NORDER_Y S32 2 # number of y orders + NORDER_Z S32 1 # number of z orders + NORDER_T S32 1 # number of t orders + VAL_X00_Y00_Z00_T00 F64 1 # polynomial coefficient + VAL_X00_Y00_Z01_T00 F64 0 # polynomial coefficient + NELEMENTS S32 2 # number of unmasked components +END # folder for 4D polynomial Index: /branches/rel-1-1/ippconfig/lris_blue/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_blue/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_blue/camera.config (revision 12167) @@ -0,0 +1,21 @@ +# Camera configuration file for LRIS Blue: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR lris_blue/format_raw.config + MEF STR lris_blue/format_mef.config +END + + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + LeftChip STR LeftAmp RightAmp + RightChip STR LeftAmp RightAmp +END + + +# Recipe options +RECIPES METADATA + PHASE2 STR phase2.config # Phase 2 recipe details +# PSPHOT STR psphot.config # psphot details +END Index: /branches/rel-1-1/ippconfig/lris_blue/format_mef.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_blue/format_mef.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_blue/format_mef.config (revision 12167) @@ -0,0 +1,79 @@ +# The Low Resolution Imager and Spectrograph (LRIS) blue side + +# How to identify this type +RULE METADATA + TELESCOP STR Keck I + INSTRUME STR LRISBLUE + FORMAT STR MEF +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CHIP # There are no extensions + FPA.NAME STR OBSNUM # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS METADATA + ccd1 STR LeftChip:LeftAmp:left LeftChip:RightAmp:right + ccd2 STR RightChip:LeftAmp:left RightChip:RightAmp:right +END + +# Specify the cell data +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.GAIN.SOURCE STR HEADER + CELL.BIASSEC STR BSECL1 BSECL2 + CELL.TRIMSEC STR TSECL + CELL.GAIN STR GAINL + CELL.X0 S32 0 + END + + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.GAIN.SOURCE STR HEADER + CELL.BIASSEC STR BSECR1 BSECR2 + CELL.TRIMSEC STR TSECR + CELL.GAIN STR GAINR + CELL.X0 S32 1024 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR BLUFILT + FPA.POSANGLE STR ROTPOSN + FPA.RA STR RA + FPA.DEC STR DEC + CELL.EXPOSURE STR EXPOSURE + CELL.DARKTIME STR EXPOSURE # No special darktime header; use exposure time + CELL.TIME STR MJD-OBS + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.RADECSYS STR ICRS + CELL.TIMESYS STR UTC + CELL.READDIR S32 1 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 + CELL.READNOISE F32 2.5 + CELL.SATURATION F32 65536 + CELL.BAD F32 0 +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.TIME STR MJD +END Index: /branches/rel-1-1/ippconfig/lris_blue/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_blue/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_blue/format_raw.config (revision 12167) @@ -0,0 +1,113 @@ +# The Low Resolution Imager and Spectrograph (LRIS) blue side + +# We have no choice but to hard-code the various regions, because Keck +# only stores them as: +# WINDOW = '1,0,0,2048,4096' +# PREPIX = 51 +# POSTPIX = 80 +# BINNING = '1,1 ' +# AMPPSIZE= '[1:1024,1:4096]' + +# I don't know how we would get the IPP to react to changes in the +# windowing on the fly --- we have no mechanism for setting the region +# sizes on the basis of the above keywords. Therefore, we hard-code +# the regions and assert on our assumptions in the RULE. + + +# How to identify this type +RULE METADATA + TELESCOP STR Keck I + INSTRUME STR LRISBLUE + AMPLIST STR 1,4,0,0 + WINDOW STR 1,0,0,2048,4096 + PREPIX S32 51 + POSTPIX S32 80 + BINNING STR 1,1 + AMPPSIZE STR [1:1024,1:4096] + NAXIS1 S32 4620 + NAXIS2 S32 4096 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR OBSNUM # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR LeftChip:LeftAmp:amp1 LeftChip:RightAmp:amp2 RightChip:LeftAmp:amp3 RightChip:RightAmp:amp4 + +# Specify the cell data +CELLS METADATA + amp1 METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [1:51,1:4096];[4301:4380,1:4096] + CELL.TRIMSEC STR [205:1228,1:4096] + CELL.GAIN F32 1.542 + CELL.X0 S32 0 + END + + amp2 METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [52:102,1:4096];[4381:4460,1:4096] + CELL.TRIMSEC STR [1229:2252,1:4096] + CELL.GAIN F32 1.546 + CELL.X0 S32 1024 + END + + amp3 METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [103:153,1:4096];[4461:4540,1:4096] + CELL.TRIMSEC STR [2253:3276,1:4096] + CELL.GAIN F32 1.632 + CELL.X0 S32 0 + END + + amp4 METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [154:204,1:4096];[4541:4620,1:4096] + CELL.TRIMSEC STR [3277:4300,1:4096] + CELL.GAIN F32 1.633 + CELL.X0 S32 1024 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR BLUFILT + FPA.POSANGLE STR ROTPOSN + FPA.RA STR RA + FPA.DEC STR DEC + CELL.EXPOSURE STR EXPOSURE + CELL.DARKTIME STR EXPOSURE # No special darktime header; use exposure time + CELL.TIME STR MJD-OBS + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.RADECSYS STR ICRS + CELL.TIMESYS STR UTC + CELL.READDIR S32 1 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 + CELL.READNOISE F32 2.5 + CELL.SATURATION F32 65536 + CELL.BAD F32 0 +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.TIME STR MJD +END Index: /branches/rel-1-1/ippconfig/lris_red/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_red/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_red/camera.config (revision 12167) @@ -0,0 +1,19 @@ +# Camera configuration file for LRIS-Red: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR lris_red/format_raw.config + SPEC STR lris_red/format_spec.config +END + + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + RedChip STR LeftSide RightSide +END + + +# Recipes to use when processing this camera +RECIPES METADATA + PPMERGE STR ppMerge.config # Recipe to use for ppMerge +END Index: /branches/rel-1-1/ippconfig/lris_red/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_red/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_red/format_raw.config (revision 12167) @@ -0,0 +1,95 @@ +# The Low Resolution Imager and Spectrograph (LRIS) red side + +# We have no choice but to hard-code the various regions, because Keck +# only stores them as: +# WINDOW = '0,0,0,2048,2048' +# PREPIX = 20 +# POSTPIX = 80 +# BINNING = '1,1 ' +# AMPPSIZE= '[1:1024,1:4096]' + +# I don't know how we would get the IPP to react to changes in the +# windowing on the fly --- we have no mechanism for setting the region +# sizes on the basis of the above keywords. Therefore, we hard-code +# the regions and assert on our assumptions in the RULE. + + +# How to identify this type +RULE METADATA + TELESCOP STR Keck I + INSTRUME STR LRIS + AMPLIST STR 2,1,0,0 + WINDOW STR 0,0,0,2048,2048 + PREPIX S32 20 + POSTPIX S32 80 + BINNING STR 1, 1 + CCDPSIZE STR [1:2048,1:2048] + NAXIS1 S32 2248 + NAXIS2 S32 2048 + IMTYPE STR TWOAMPTOP +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents a single chip + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR OBSNUM # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR RedChip:LeftSide:left RedChip:RightSide:right + +# Specify the cell data +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [1:20,1:2048];[2089:2168,1:2048] + CELL.TRIMSEC STR [41:1064,1:2048] + CELL.GAIN F32 1.98 + CELL.READNOISE F32 6.1 + CELL.X0 S32 0 + END + + right METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [21:40,1:2048];[2169:2248,1:2048] + CELL.TRIMSEC STR [1065:2088,1:2048] + CELL.GAIN F32 2.17 + CELL.READNOISE F32 6.3 + CELL.X0 S32 1023 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR POSANG + FPA.RA STR OBJ-RA + FPA.DEC STR OBJ-DEC + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR MJD-OBS +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.RADECSYS STR ICRS + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.SATURATION F32 65535 + CELL.BAD F32 0 + CELL.XBIN S32 1 + CELL.YBIN S32 1 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC +END + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.TIME STR MJD +END Index: /branches/rel-1-1/ippconfig/lris_red/format_spec.config =================================================================== --- /branches/rel-1-1/ippconfig/lris_red/format_spec.config (revision 12167) +++ /branches/rel-1-1/ippconfig/lris_red/format_spec.config (revision 12167) @@ -0,0 +1,96 @@ +# The Low Resolution Imager and Spectrograph (LRIS) red side + +# We have no choice but to hard-code the various regions, because Keck +# only stores them as: +# WINDOW = '0,0,550,2048,1000' +# PREPIX = 20 +# POSTPIX = 80 +# BINNING = '1,1 ' +# AMPPSIZE= '[1:1024,1:4096]' + +# I don't know how we would get the IPP to react to changes in the +# windowing on the fly --- we have no mechanism for setting the region +# sizes on the basis of the above keywords. Therefore, we hard-code +# the regions and assert on our assumptions in the RULE. + + +# How to identify this type +RULE METADATA + TELESCOP STR Keck I + INSTRUME STR LRIS + AMPLIST STR 2,1,0,0 + WINDOW STR 0,0,550,2048,1000 # Narrow spectroscopy format + PREPIX S32 20 + POSTPIX S32 80 + BINNING STR 1, 1 + CCDPSIZE STR [1:2048,1:2048] + NAXIS1 S32 2248 + NAXIS2 S32 1000 + IMTYPE STR TWOAMPTOP +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents a single chip + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR OBSNUM # A PHU keyword for unique identifier within the hierarchy level + CHIP.NAME STR INSTRUME # An extension keyword for unique identifier +END + +# What's in the FITS file? +CONTENTS STR RedChip:LeftSide:left RedChip:RightSide:right + +# Specify the cell data +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [1:20,1:1000];[2089:2168,1:1000] + CELL.TRIMSEC STR [41:1064,1:1000] + CELL.GAIN F32 1.98 + CELL.READNOISE F32 6.1 + CELL.X0 S32 0 + END + + right METADATA + CELL.BIASSEC.SOURCE STR VALUE + CELL.TRIMSEC.SOURCE STR VALUE + CELL.BIASSEC STR [21:40,1:1000];[2169:2248,1:1000] + CELL.TRIMSEC STR [1065:2088,1:1000] + CELL.GAIN F32 2.17 + CELL.READNOISE F32 6.3 + CELL.X0 S32 1023 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR POSANG + FPA.RA STR OBJ-RA + FPA.DEC STR OBJ-DEC + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR MJD-OBS +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.RADECSYS STR ICRS + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.SATURATION F32 65535 + CELL.BAD F32 0 + CELL.XBIN S32 1 + CELL.YBIN S32 1 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC +END + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.TIME STR MJD +END Index: /branches/rel-1-1/ippconfig/mcshort/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/mcshort/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/mcshort/camera.config (revision 12167) @@ -0,0 +1,188 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# Camera configuration file for MegaCam: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR mcshort/format_raw.config + SPLICED STR mcshort/format_spliced.config + SPLIT STR mcshort/format_split.config +END + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA +# ccd00 STR LeftAmp RightAmp +# ccd01 STR LeftAmp RightAmp +# ccd02 STR LeftAmp RightAmp +# ccd03 STR LeftAmp RightAmp +# ccd04 STR LeftAmp RightAmp +# ccd05 STR LeftAmp RightAmp +# ccd06 STR LeftAmp RightAmp +# ccd07 STR LeftAmp RightAmp +# ccd08 STR LeftAmp RightAmp +# ccd09 STR LeftAmp RightAmp +# ccd10 STR LeftAmp RightAmp +# ccd11 STR LeftAmp RightAmp + ccd12 STR LeftAmp RightAmp + ccd13 STR LeftAmp RightAmp + ccd14 STR LeftAmp RightAmp +# ccd15 STR LeftAmp RightAmp +# ccd16 STR LeftAmp RightAmp +# ccd17 STR LeftAmp RightAmp +# ccd18 STR LeftAmp RightAmp +# ccd19 STR LeftAmp RightAmp +# ccd20 STR LeftAmp RightAmp + ccd21 STR LeftAmp RightAmp + ccd22 STR LeftAmp RightAmp + ccd23 STR LeftAmp RightAmp +# ccd24 STR LeftAmp RightAmp +# ccd25 STR LeftAmp RightAmp +# ccd26 STR LeftAmp RightAmp +# ccd27 STR LeftAmp RightAmp +# ccd28 STR LeftAmp RightAmp +# ccd29 STR LeftAmp RightAmp +# ccd30 STR LeftAmp RightAmp +# ccd31 STR LeftAmp RightAmp +# ccd32 STR LeftAmp RightAmp +# ccd33 STR LeftAmp RightAmp +# ccd34 STR LeftAmp RightAmp +# ccd35 STR LeftAmp RightAmp +END + + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + u.MP9301 STR u + g.MP9401 STR g + r.MP9601 STR r + i.MP9701 STR i + z.MP9801 STR z + Zp STR z + Zprime STR z + Ha.MP7605 STR Ha + Halpha STR Ha + Haalpha.on STR Ha + HaOFF.MP7604 STR HaOff + + CN.MP780 STR CN + cn.MP7803 STR CN + CN.MP7803 STR CN + + TiO.MP77 STR TiO + tio.MP7701 STR TiO + TiO.MP7701 STR TiO + NB920 STR NB920 + + B2F STR B2F + Bj STR Bj + Vj STR Vj + Rj STR Rj + Ij STR Ij + Hb STR Hb + HbOff STR HbOff +END + + +# Recipe options +RECIPES METADATA + # Other recipes + PSPHOT STR megacam/psphot.config # psphot details + PSASTRO STR megacam/psastro.config # psastro details + PPSTATS STR megacam/ppStats.config # ppStats recipe + PPIMAGE STR megacam/ppImage.config # ppImage recipe +END + + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN IMFILE.MEANSTDEV + FLAT MULTI + SKYFLAT MULTI + DOMEFLAT MULTI + + BIAS LIMITS * 0 1 4 0.5 4 0 3 4 0 0 0 0.5 + DARK LIMITS * 0 1 4 0.5 4 0 3 4 0 0 0 0.5 + FLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 + SKYFLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 + DOMEFLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 3 0 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + + +FILERULES METADATA + ### Redirections + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + ### use these entries to get the detrend images from specific files +# PPIMAGE.MASK INPUT mcshort/mask.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP MASK + PPIMAGE.BIAS INPUT file:///data/alala/price/megacam/bias/MCSHORT.bias.norm.1.2.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.DARK INPUT file:///data/alala/price/megacam/bias/MCSHORT.dark.norm.2.1.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.FLAT INPUT file:///data/alala/price/megacam/flats/MCSHORT.flat.norm.3.1.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.FRINGE INPUT file:///fringe.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP FRINGE + + ### use these entries to get the detrend images from the database + #PPIMAGE.MASK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.BIAS INPUT @DETDB fpa fpa NONE CHIP IMAGE + #PPIMAGE.DARK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.FLAT INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + + PSPHOT.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + PSASTRO.INPUT.CMP INPUT @FILES NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT @FILES NONE SMPDATA PHU CHIP CMF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.LEVEL DATA.LEVEL FILE.TYPE FILE.SAVE FILE.FORMAT +# PPIMAGE.OUTPUT OUTPUT {OUTPUT}.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE NONE + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE SPLICED + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.{CHIP.NAME}.mask.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP MASK FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.{CHIP.NAME}.wt.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP WEIGHT FALSE NONE + PPIMAGE.BIN1 OUTPUT {OUTPUT}.{CHIP.NAME}.b1.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE NONE + PPIMAGE.BIN2 OUTPUT {OUTPUT}.{CHIP.NAME}.b2.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE NONE + + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.{CHIP.NAME}.chip.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE FPA FPA IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE FPA FPA IMAGE TRUE NONE + + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT}.{CHIP.NAME} NONE NONE PHU CHIP CHIP RAW TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE PHU CHIP CHIP SX TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE PHU CHIP CHIP OBJ TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CHIP CHIP CMF TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.cmp NONE NONE PHU CHIP CHIP CMP TRUE NONE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.smp NONE NONE PHU CHIP CHIP CMP TRUE NONE + +END Index: /branches/rel-1-1/ippconfig/mcshort/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/mcshort/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/mcshort/format_raw.config (revision 12167) @@ -0,0 +1,336 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The raw MegaCam data comes off the telescope with each of the chips stored in extensions of a MEF file. + +# How to identify this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam + EXTEND BOOL T + NEXTEND S32 72 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CELL # The extensions represent cells + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:type +# amp00 STR ccd00:LeftAmp:left +# amp01 STR ccd00:RightAmp:right +# amp02 STR ccd01:LeftAmp:left +# amp03 STR ccd01:RightAmp:right +# amp04 STR ccd02:LeftAmp:left +# amp05 STR ccd02:RightAmp:right +# amp06 STR ccd03:LeftAmp:left +# amp07 STR ccd03:RightAmp:right +# amp08 STR ccd04:LeftAmp:left +# amp09 STR ccd04:RightAmp:right +# amp10 STR ccd05:LeftAmp:left +# amp11 STR ccd05:RightAmp:right +# amp12 STR ccd06:LeftAmp:left +# amp13 STR ccd06:RightAmp:right +# amp14 STR ccd07:LeftAmp:left +# amp15 STR ccd07:RightAmp:right +# amp16 STR ccd08:LeftAmp:left +# amp17 STR ccd08:RightAmp:right +# amp18 STR ccd09:LeftAmp:left +# amp19 STR ccd09:RightAmp:right +# amp20 STR ccd10:LeftAmp:left +# amp21 STR ccd10:RightAmp:right +# amp22 STR ccd11:LeftAmp:left +# amp23 STR ccd11:RightAmp:right + amp24 STR ccd12:LeftAmp:left + amp25 STR ccd12:RightAmp:right + amp26 STR ccd13:LeftAmp:left + amp27 STR ccd13:RightAmp:right + amp28 STR ccd14:LeftAmp:left + amp29 STR ccd14:RightAmp:right +# amp30 STR ccd15:LeftAmp:left +# amp31 STR ccd15:RightAmp:right +# amp32 STR ccd16:LeftAmp:left +# amp33 STR ccd16:RightAmp:right +# amp34 STR ccd17:LeftAmp:left +# amp35 STR ccd17:RightAmp:right +# amp36 STR ccd18:LeftAmp:left +# amp37 STR ccd18:RightAmp:right +# amp38 STR ccd19:LeftAmp:left +# amp39 STR ccd19:RightAmp:right +# amp40 STR ccd20:LeftAmp:left +# amp41 STR ccd20:RightAmp:right + amp42 STR ccd21:LeftAmp:left + amp43 STR ccd21:RightAmp:right + amp44 STR ccd22:LeftAmp:left + amp45 STR ccd22:RightAmp:right + amp46 STR ccd23:LeftAmp:left + amp47 STR ccd23:RightAmp:right +# amp48 STR ccd24:LeftAmp:left +# amp49 STR ccd24:RightAmp:right +# amp50 STR ccd25:LeftAmp:left +# amp51 STR ccd25:RightAmp:right +# amp52 STR ccd26:LeftAmp:left +# amp53 STR ccd26:RightAmp:right +# amp54 STR ccd27:LeftAmp:left +# amp55 STR ccd27:RightAmp:right +# amp56 STR ccd28:LeftAmp:left +# amp57 STR ccd28:RightAmp:right +# amp58 STR ccd29:LeftAmp:left +# amp59 STR ccd29:RightAmp:right +# amp60 STR ccd30:LeftAmp:left +# amp61 STR ccd30:RightAmp:right +# amp62 STR ccd31:LeftAmp:left +# amp63 STR ccd31:RightAmp:right +# amp64 STR ccd32:LeftAmp:left +# amp65 STR ccd32:RightAmp:right +# amp66 STR ccd33:LeftAmp:left +# amp67 STR ccd33:RightAmp:right +# amp68 STR ccd34:LeftAmp:left +# amp69 STR ccd34:RightAmp:right +# amp70 STR ccd35:LeftAmp:left +# amp71 STR ccd35:RightAmp:right +END + +# Specify the cell data +CELLS METADATA + left METADATA # Left amplifier + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR DATASEC + CELL.XPARITY S32 1 # We could have specified this as a DEFAULT, but this works + CELL.X0 S32 1 + CELL.Y0 S32 1 + END + right METADATA # Right amplifier + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR DATASEC + CELL.XPARITY S32 -1 # This cell is read out in the opposite direction + CELL.X0 S32 2048 + CELL.Y0 S32 1 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.NAME STR EXPNUM + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.YPARITY S32 1 + + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA +# ccd00 S32 0 +# ccd01 S32 2048 +# ccd02 S32 4096 +# ccd03 S32 6144 +# ccd04 S32 8192 +# ccd05 S32 10240 +# ccd06 S32 12288 +# ccd07 S32 14336 +# ccd08 S32 16384 +# ccd09 S32 0 +# ccd10 S32 2048 +# ccd11 S32 4096 + ccd12 S32 6144 + ccd13 S32 8192 + ccd14 S32 10240 +# ccd15 S32 12288 +# ccd16 S32 14336 +# ccd17 S32 16384 +# ccd18 S32 0 +# ccd19 S32 2048 +# ccd20 S32 4096 + ccd21 S32 6144 + ccd22 S32 8192 + ccd23 S32 10240 +# ccd24 S32 12288 +# ccd25 S32 14336 +# ccd26 S32 16384 +# ccd27 S32 0 +# ccd28 S32 2048 +# ccd29 S32 4096 +# ccd30 S32 6144 +# ccd31 S32 8192 +# ccd32 S32 10240 +# ccd33 S32 12288 +# ccd34 S32 14336 +# ccd35 S32 16384 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA +# ccd00 S32 18447 +# ccd01 S32 18447 +# ccd02 S32 18447 +# ccd03 S32 18447 +# ccd04 S32 18447 +# ccd05 S32 18447 +# ccd06 S32 18447 +# ccd07 S32 18447 +# ccd08 S32 18447 +# ccd09 S32 13835 +# ccd10 S32 13835 +# ccd11 S32 13835 + ccd12 S32 13835 + ccd13 S32 13835 + ccd14 S32 13835 +# ccd15 S32 13835 +# ccd16 S32 13835 +# ccd17 S32 13835 +# ccd18 S32 13835 +# ccd19 S32 4612 +# ccd20 S32 4612 + ccd21 S32 4612 + ccd22 S32 4612 + ccd23 S32 4612 +# ccd24 S32 4612 +# ccd25 S32 4612 +# ccd26 S32 4612 +# ccd27 S32 0 +# ccd28 S32 0 +# ccd29 S32 0 +# ccd30 S32 0 +# ccd31 S32 0 +# ccd32 S32 0 +# ccd33 S32 0 +# ccd34 S32 0 +# ccd35 S32 0 + END + CHIP.XPARITY.DEPEND STR CHIP.NAME + CHIP.XPARITY METADATA +# ccd00 S32 1 +# ccd01 S32 1 +# ccd02 S32 1 +# ccd03 S32 1 +# ccd04 S32 1 +# ccd05 S32 1 +# ccd06 S32 1 +# ccd07 S32 1 +# ccd08 S32 1 +# ccd09 S32 1 +# ccd10 S32 1 +# ccd11 S32 1 + ccd12 S32 1 + ccd13 S32 1 + ccd14 S32 1 +# ccd15 S32 1 +# ccd16 S32 1 +# ccd17 S32 1 +# ccd18 S32 1 +# ccd19 S32 1 +# ccd20 S32 1 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 1 +# ccd25 S32 1 +# ccd26 S32 1 +# ccd27 S32 1 +# ccd28 S32 1 +# ccd29 S32 1 +# ccd30 S32 1 +# ccd31 S32 1 +# ccd32 S32 1 +# ccd33 S32 1 +# ccd34 S32 1 +# ccd35 S32 1 + END + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA +# ccd00 S32 -1 +# ccd01 S32 -1 +# ccd02 S32 -1 +# ccd03 S32 -1 +# ccd04 S32 -1 +# ccd05 S32 -1 +# ccd06 S32 -1 +# ccd07 S32 -1 +# ccd08 S32 -1 +# ccd09 S32 -1 +# ccd10 S32 -1 +# ccd11 S32 -1 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 +# ccd15 S32 -1 +# ccd16 S32 -1 +# ccd17 S32 -1 +# ccd18 S32 1 +# ccd19 S32 1 +# ccd20 S32 1 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 1 +# ccd25 S32 1 +# ccd26 S32 1 +# ccd27 S32 1 +# ccd28 S32 1 +# ccd29 S32 1 +# ccd30 S32 1 +# ccd31 S32 1 +# ccd32 S32 1 +# ccd33 S32 1 +# ccd34 S32 1 +# ccd35 S32 1 + END +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# FPA.BIAS METADATA +# TABLE STR Camera +# COLUMN STR gain +# chipId STR {CHIP.NAME} +# cellId STR {CELL.NAME} +# time STR {CELL.TIME} +# END +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD + CELL.X0 STR FORTRAN + CELL.Y0 STR FORTRAN +END Index: /branches/rel-1-1/ippconfig/mcshort/format_spliced.config =================================================================== --- /branches/rel-1-1/ippconfig/mcshort/format_spliced.config (revision 12167) +++ /branches/rel-1-1/ippconfig/mcshort/format_spliced.config (revision 12167) @@ -0,0 +1,298 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The spliced MecaCam data is stored in single extensions for each chip + +# How to recognise this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam + EXTEND BOOL T + NEXTEND S32 36 +END + +FILE METADATA + # How to read this data + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CHIP # The extensions represent chips + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier + CHIP.NAME STR EXTNAME # An extension keyword for unique identifie +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:component cell +# ccd00 STR ccd00:LeftAmp:left ccd00:RightAmp:right +# ccd01 STR ccd01:LeftAmp:left ccd01:RightAmp:right +# ccd02 STR ccd02:LeftAmp:left ccd02:RightAmp:right +# ccd03 STR ccd03:LeftAmp:left ccd03:RightAmp:right +# ccd04 STR ccd04:LeftAmp:left ccd04:RightAmp:right +# ccd05 STR ccd05:LeftAmp:left ccd05:RightAmp:right +# ccd06 STR ccd06:LeftAmp:left ccd06:RightAmp:right +# ccd07 STR ccd07:LeftAmp:left ccd07:RightAmp:right +# ccd08 STR ccd08:LeftAmp:left ccd08:RightAmp:right +# ccd09 STR ccd09:LeftAmp:left ccd09:RightAmp:right +# ccd10 STR ccd10:LeftAmp:left ccd10:RightAmp:right +# ccd11 STR ccd11:LeftAmp:left ccd11:RightAmp:right + ccd12 STR ccd12:LeftAmp:left ccd12:RightAmp:right + ccd13 STR ccd13:LeftAmp:left ccd13:RightAmp:right + ccd14 STR ccd14:LeftAmp:left ccd14:RightAmp:right +# ccd15 STR ccd15:LeftAmp:left ccd15:RightAmp:right +# ccd16 STR ccd16:LeftAmp:left ccd16:RightAmp:right +# ccd17 STR ccd17:LeftAmp:left ccd17:RightAmp:right +# ccd18 STR ccd18:LeftAmp:left ccd18:RightAmp:right +# ccd19 STR ccd19:LeftAmp:left ccd19:RightAmp:right +# ccd20 STR ccd20:LeftAmp:left ccd20:RightAmp:right + ccd21 STR ccd21:LeftAmp:left ccd21:RightAmp:right + ccd22 STR ccd22:LeftAmp:left ccd22:RightAmp:right + ccd23 STR ccd23:LeftAmp:left ccd23:RightAmp:right +# ccd24 STR ccd24:LeftAmp:left ccd24:RightAmp:right +# ccd25 STR ccd25:LeftAmp:left ccd25:RightAmp:right +# ccd26 STR ccd26:LeftAmp:left ccd26:RightAmp:right +# ccd27 STR ccd27:LeftAmp:left ccd27:RightAmp:right +# ccd28 STR ccd28:LeftAmp:left ccd28:RightAmp:right +# ccd29 STR ccd29:LeftAmp:left ccd29:RightAmp:right +# ccd30 STR ccd30:LeftAmp:left ccd30:RightAmp:right +# ccd31 STR ccd31:LeftAmp:left ccd31:RightAmp:right +# ccd32 STR ccd32:LeftAmp:left ccd32:RightAmp:right +# ccd33 STR ccd33:LeftAmp:left ccd33:RightAmp:right +# ccd34 STR ccd34:LeftAmp:left ccd34:RightAmp:right +# ccd35 STR ccd35:LeftAmp:left ccd35:RightAmp:right +END + +# Specify the cells +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECA + CELL.TRIMSEC STR TSECA + CELL.X0 S32 0 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINA + END + + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECB + CELL.TRIMSEC STR TSECB + CELL.X0 S32 1024 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINB + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.NAME STR EXPNUM + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.TIMESYS STR UTC + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 +# PPMERGE.SCALE F32 1.0 +# PPMERGE.ZERO F32 0.0 + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 0 + ccd13 S32 2048 + ccd14 S32 4096 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 0 + ccd22 S32 2048 + ccd23 S32 4096 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 9223 + ccd13 S32 9223 + ccd14 S32 9223 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 0 + ccd22 S32 0 + ccd23 S32 0 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.XPARITY.DEPEND STR CHIP.NAME + CHIP.XPARITY METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 1 + ccd13 S32 1 + ccd14 S32 1 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END +END + + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + Index: /branches/rel-1-1/ippconfig/mcshort/format_split.config =================================================================== --- /branches/rel-1-1/ippconfig/mcshort/format_split.config (revision 12167) +++ /branches/rel-1-1/ippconfig/mcshort/format_split.config (revision 12167) @@ -0,0 +1,296 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The spliced MecaCam data is stored in single extensions for each chip + +# How to recognise this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam +END + +FILE METADATA + # How to read this data + PHU STR CHIP # The FITS file represents an entire FPA + EXTENSIONS STR NONE # The extensions represent chips + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier + CHIP.NAME STR EXTNAME # An extension keyword for unique identifie + CONTENT STR {CHIP.NAME} # Key to the CONTENTS menu +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:component cell +# ccd00 STR ccd00:LeftAmp:left ccd00:RightAmp:right +# ccd01 STR ccd01:LeftAmp:left ccd01:RightAmp:right +# ccd02 STR ccd02:LeftAmp:left ccd02:RightAmp:right +# ccd03 STR ccd03:LeftAmp:left ccd03:RightAmp:right +# ccd04 STR ccd04:LeftAmp:left ccd04:RightAmp:right +# ccd05 STR ccd05:LeftAmp:left ccd05:RightAmp:right +# ccd06 STR ccd06:LeftAmp:left ccd06:RightAmp:right +# ccd07 STR ccd07:LeftAmp:left ccd07:RightAmp:right +# ccd08 STR ccd08:LeftAmp:left ccd08:RightAmp:right +# ccd09 STR ccd09:LeftAmp:left ccd09:RightAmp:right +# ccd10 STR ccd10:LeftAmp:left ccd10:RightAmp:right +# ccd11 STR ccd11:LeftAmp:left ccd11:RightAmp:right + ccd12 STR ccd12:LeftAmp:left ccd12:RightAmp:right + ccd13 STR ccd13:LeftAmp:left ccd13:RightAmp:right + ccd14 STR ccd14:LeftAmp:left ccd14:RightAmp:right +# ccd15 STR ccd15:LeftAmp:left ccd15:RightAmp:right +# ccd16 STR ccd16:LeftAmp:left ccd16:RightAmp:right +# ccd17 STR ccd17:LeftAmp:left ccd17:RightAmp:right +# ccd18 STR ccd18:LeftAmp:left ccd18:RightAmp:right +# ccd19 STR ccd19:LeftAmp:left ccd19:RightAmp:right +# ccd20 STR ccd20:LeftAmp:left ccd20:RightAmp:right + ccd21 STR ccd21:LeftAmp:left ccd21:RightAmp:right + ccd22 STR ccd22:LeftAmp:left ccd22:RightAmp:right + ccd23 STR ccd23:LeftAmp:left ccd23:RightAmp:right +# ccd24 STR ccd24:LeftAmp:left ccd24:RightAmp:right +# ccd25 STR ccd25:LeftAmp:left ccd25:RightAmp:right +# ccd26 STR ccd26:LeftAmp:left ccd26:RightAmp:right +# ccd27 STR ccd27:LeftAmp:left ccd27:RightAmp:right +# ccd28 STR ccd28:LeftAmp:left ccd28:RightAmp:right +# ccd29 STR ccd29:LeftAmp:left ccd29:RightAmp:right +# ccd30 STR ccd30:LeftAmp:left ccd30:RightAmp:right +# ccd31 STR ccd31:LeftAmp:left ccd31:RightAmp:right +# ccd32 STR ccd32:LeftAmp:left ccd32:RightAmp:right +# ccd33 STR ccd33:LeftAmp:left ccd33:RightAmp:right +# ccd34 STR ccd34:LeftAmp:left ccd34:RightAmp:right +# ccd35 STR ccd35:LeftAmp:left ccd35:RightAmp:right +END + +# Specify the cells +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECA + CELL.TRIMSEC STR TSECA + CELL.X0 S32 0 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINA + END + + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECB + CELL.TRIMSEC STR TSECB + CELL.X0 S32 1024 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINB + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.NAME STR EXPNUM + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 +# PPMERGE.SCALE F32 1.0 +# PPMERGE.ZERO F32 0.0 + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 0 + ccd13 S32 2048 + ccd14 S32 4096 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 0 + ccd22 S32 2048 + ccd23 S32 4096 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 9223 + ccd13 S32 9223 + ccd14 S32 9223 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 0 + ccd22 S32 0 + ccd23 S32 0 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.XPARITY.DEPEND STR CHIP.NAME + CHIP.XPARITY METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 1 + ccd13 S32 1 + ccd14 S32 1 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA +# ccd00 S32 +# ccd01 S32 +# ccd02 S32 +# ccd03 S32 +# ccd04 S32 +# ccd05 S32 +# ccd06 S32 +# ccd07 S32 +# ccd08 S32 +# ccd09 S32 +# ccd10 S32 +# ccd11 S32 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 +# ccd15 S32 +# ccd16 S32 +# ccd17 S32 +# ccd18 S32 +# ccd19 S32 +# ccd20 S32 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 +# ccd24 S32 +# ccd25 S32 +# ccd26 S32 +# ccd27 S32 +# ccd28 S32 +# ccd29 S32 +# ccd30 S32 +# ccd31 S32 +# ccd32 S32 +# ccd33 S32 +# ccd34 S32 +# ccd35 S32 + END +END + + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + Index: /branches/rel-1-1/ippconfig/megacam/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/megacam/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/ippconfig/megacam/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/megacam/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/Makefile.am (revision 12167) @@ -0,0 +1,22 @@ + +installdir = $(datadir)/ippconfig/megacam + +install_files = \ + camera.config \ + format_raw.config \ + format_split.config \ + format_spliced.config \ + ppImage.config \ + ppMerge.config \ + ppStats.config \ + psastro.config \ + psphot.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/megacam/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/camera.config (revision 12167) @@ -0,0 +1,212 @@ +# Camera configuration file for MegaCam: describes the camera + +# File formats that we know about +FORMATS METADATA + RAW STR megacam/format_raw.config + SPLICED STR megacam/format_spliced.config + SPLIT STR megacam/format_split.config +END + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + ccd00 STR LeftAmp RightAmp + ccd01 STR LeftAmp RightAmp + ccd02 STR LeftAmp RightAmp + ccd03 STR LeftAmp RightAmp + ccd04 STR LeftAmp RightAmp + ccd05 STR LeftAmp RightAmp + ccd06 STR LeftAmp RightAmp + ccd07 STR LeftAmp RightAmp + ccd08 STR LeftAmp RightAmp + ccd09 STR LeftAmp RightAmp + ccd10 STR LeftAmp RightAmp + ccd11 STR LeftAmp RightAmp + ccd12 STR LeftAmp RightAmp + ccd13 STR LeftAmp RightAmp + ccd14 STR LeftAmp RightAmp + ccd15 STR LeftAmp RightAmp + ccd16 STR LeftAmp RightAmp + ccd17 STR LeftAmp RightAmp + ccd18 STR LeftAmp RightAmp + ccd19 STR LeftAmp RightAmp + ccd20 STR LeftAmp RightAmp + ccd21 STR LeftAmp RightAmp + ccd22 STR LeftAmp RightAmp + ccd23 STR LeftAmp RightAmp + ccd24 STR LeftAmp RightAmp + ccd25 STR LeftAmp RightAmp + ccd26 STR LeftAmp RightAmp + ccd27 STR LeftAmp RightAmp + ccd28 STR LeftAmp RightAmp + ccd29 STR LeftAmp RightAmp + ccd30 STR LeftAmp RightAmp + ccd31 STR LeftAmp RightAmp + ccd32 STR LeftAmp RightAmp + ccd33 STR LeftAmp RightAmp + ccd34 STR LeftAmp RightAmp + ccd35 STR LeftAmp RightAmp +END + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + u.MP9301 STR u + g.MP9401 STR g + r.MP9601 STR r + i.MP9701 STR i + z.MP9801 STR z + Zp STR z + Zprime STR z + Ha.MP7605 STR Ha + Halpha STR Ha + Haalpha.on STR Ha + HaOFF.MP7604 STR HaOff + + CN.MP780 STR CN + cn.MP7803 STR CN + CN.MP7803 STR CN + + TiO.MP77 STR TiO + tio.MP7701 STR TiO + TiO.MP7701 STR TiO + NB920 STR NB920 + + B2F STR B2F + Bj STR Bj + Vj STR Vj + Rj STR Rj + Ij STR Ij + Hb STR Hb + HbOff STR HbOff +END + +# convert supplied FPA.OBSTYPE values to abstract exptype names +OBSTYPE.TABLE METADATA + bias STR BIAS + zero STR BIAS + dark STR DARK + flat STR SKYFLAT + skyflat STR SKYFLAT + domeflat STR DOMEFLAT + object STR OBJECT + science STR OBJECT +END + +# Recipe options +RECIPES METADATA + # Other recipes + PSPHOT STR megacam/psphot.config # psphot details + PSASTRO STR megacam/psastro.config # psastro details + PPSTATS STR megacam/ppStats.config # ppStats recipe + PPIMAGE STR megacam/ppImage.config # ppImage recipe +END + + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN + FLAT MULTI + + BIAS LIMITS * 0 1 5 0.5 3 0.5 3 3 0 0 0 + DARK LIMITS * 0 1 5 0.5 3 0.5 3 3 0 0 0 + FLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 3 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 3 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + + +FILERULES METADATA + ### Redirections + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + PPIMAGE.OUTPUT STR PPIMAGE.OUTPUT.MEF + PPIMAGE.BIN1 STR PPIMAGE.BIN1.MEF + PPIMAGE.BIN2 STR PPIMAGE.BIN2.MEF + DVOCORR.OUTPUT STR DVOCORR.MEF.OUTPUT + DVOFLAT.OUTPUT STR DVOFLAT.MEF.OUTPUT + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + ## can we just use PPIMAGE.INPUT as the pmFPAfile name? + DVOCORR.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + DVOCORR.REFHEAD INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP HEADER + + DVOFLAT.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + DVOFLAT.CORR INPUT @DETDB {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + ### use these entries to get the detrend images from specific files + #PPIMAGE.MASK INPUT megacam/mask.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP MASK + #PPIMAGE.BIAS INPUT megacam/bias/MEGACAM.bias.norm.1.0.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.DARK INPUT megacam/MEGACAM.dark.norm.2.0.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.FLAT INPUT megacam/MEGACAM.flat.norm.3.0.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.FRINGE INPUT megacam/MEGACAM.fringe.norm.4.0.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP FRINGE + + ### use these entries to get the detrend images from the database + PPIMAGE.MASK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.BIAS INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.DARK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.FLAT INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.FRINGE INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP FRINGE + + PSPHOT.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + PSASTRO.INPUT.CMP INPUT @FILES NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT @FILES NONE SMPDATA PHU CHIP CMF + + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.LEVEL DATA.LEVEL FILE.TYPE FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT.SPL OUTPUT {OUTPUT}.{CHIP.NAME}.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE SPLIT + PPIMAGE.OUTPUT.MEF OUTPUT {OUTPUT}.fits {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE SPLICED + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.{CHIP.NAME}.mask.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP MASK FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.{CHIP.NAME}.wt.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP WEIGHT FALSE NONE + PPIMAGE.BIN1.SPL OUTPUT {OUTPUT}.{CHIP.NAME}.b1.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE SPLIT + PPIMAGE.BIN2.SPL OUTPUT {OUTPUT}.{CHIP.NAME}.b2.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE SPLIT + PPIMAGE.BIN1.MEF OUTPUT {OUTPUT}.b1.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLICED + PPIMAGE.BIN2.MEF OUTPUT {OUTPUT}.b2.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLICED + DVOCORR.MEF.OUTPUT OUTPUT {OUTPUT}.fc.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLICED + DVOCORR.SPL.OUTPUT OUTPUT {OUTPUT}.{CHIP.NAME}.fc.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLIT + DVOFLAT.MEF.OUTPUT OUTPUT {OUTPUT}.co.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLICED + DVOFLAT.SPL.OUTPUT OUTPUT {OUTPUT}.{CHIP.NAME}.co.fits NONE NONE NONE FPA CHIP IMAGE TRUE SPLIT + + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.{CHIP.NAME}.chip.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE SPLIT + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE FPA FPA IMAGE TRUE SPLICED + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE FPA FPA IMAGE TRUE SPLICED + + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE SPLICED + + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT}.{CHIP.NAME} NONE NONE PHU CHIP CHIP RAW TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE PHU CHIP CHIP SX TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE PHU CHIP CHIP OBJ TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CHIP CHIP CMF TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.cmp NONE NONE PHU CHIP CHIP CMP TRUE NONE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.smp NONE NONE PHU CHIP CHIP CMP TRUE NONE + +END Index: /branches/rel-1-1/ippconfig/megacam/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/format_raw.config (revision 12167) @@ -0,0 +1,305 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The raw MegaCam data comes off the telescope with each of the chips stored in extensions of a MEF file. + +# How to identify this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam + EXTEND BOOL T + NEXTEND S32 72 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CELL # The extensions represent cells + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:type + amp00 STR ccd00:LeftAmp:left + amp01 STR ccd00:RightAmp:right + amp02 STR ccd01:LeftAmp:left + amp03 STR ccd01:RightAmp:right + amp04 STR ccd02:LeftAmp:left + amp05 STR ccd02:RightAmp:right + amp06 STR ccd03:LeftAmp:left + amp07 STR ccd03:RightAmp:right + amp08 STR ccd04:LeftAmp:left + amp09 STR ccd04:RightAmp:right + amp10 STR ccd05:LeftAmp:left + amp11 STR ccd05:RightAmp:right + amp12 STR ccd06:LeftAmp:left + amp13 STR ccd06:RightAmp:right + amp14 STR ccd07:LeftAmp:left + amp15 STR ccd07:RightAmp:right + amp16 STR ccd08:LeftAmp:left + amp17 STR ccd08:RightAmp:right + amp18 STR ccd09:LeftAmp:left + amp19 STR ccd09:RightAmp:right + amp20 STR ccd10:LeftAmp:left + amp21 STR ccd10:RightAmp:right + amp22 STR ccd11:LeftAmp:left + amp23 STR ccd11:RightAmp:right + amp24 STR ccd12:LeftAmp:left + amp25 STR ccd12:RightAmp:right + amp26 STR ccd13:LeftAmp:left + amp27 STR ccd13:RightAmp:right + amp28 STR ccd14:LeftAmp:left + amp29 STR ccd14:RightAmp:right + amp30 STR ccd15:LeftAmp:left + amp31 STR ccd15:RightAmp:right + amp32 STR ccd16:LeftAmp:left + amp33 STR ccd16:RightAmp:right + amp34 STR ccd17:LeftAmp:left + amp35 STR ccd17:RightAmp:right + amp36 STR ccd18:LeftAmp:left + amp37 STR ccd18:RightAmp:right + amp38 STR ccd19:LeftAmp:left + amp39 STR ccd19:RightAmp:right + amp40 STR ccd20:LeftAmp:left + amp41 STR ccd20:RightAmp:right + amp42 STR ccd21:LeftAmp:left + amp43 STR ccd21:RightAmp:right + amp44 STR ccd22:LeftAmp:left + amp45 STR ccd22:RightAmp:right + amp46 STR ccd23:LeftAmp:left + amp47 STR ccd23:RightAmp:right + amp48 STR ccd24:LeftAmp:left + amp49 STR ccd24:RightAmp:right + amp50 STR ccd25:LeftAmp:left + amp51 STR ccd25:RightAmp:right + amp52 STR ccd26:LeftAmp:left + amp53 STR ccd26:RightAmp:right + amp54 STR ccd27:LeftAmp:left + amp55 STR ccd27:RightAmp:right + amp56 STR ccd28:LeftAmp:left + amp57 STR ccd28:RightAmp:right + amp58 STR ccd29:LeftAmp:left + amp59 STR ccd29:RightAmp:right + amp60 STR ccd30:LeftAmp:left + amp61 STR ccd30:RightAmp:right + amp62 STR ccd31:LeftAmp:left + amp63 STR ccd31:RightAmp:right + amp64 STR ccd32:LeftAmp:left + amp65 STR ccd32:RightAmp:right + amp66 STR ccd33:LeftAmp:left + amp67 STR ccd33:RightAmp:right + amp68 STR ccd34:LeftAmp:left + amp69 STR ccd34:RightAmp:right + amp70 STR ccd35:LeftAmp:left + amp71 STR ccd35:RightAmp:right +END + +# Specify the cell data +CELLS METADATA + left METADATA # Left amplifier + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR DATASEC + CELL.XPARITY S32 1 # We could have specified this as a DEFAULT, but this works + CELL.X0 S32 1 + CELL.Y0 S32 1 + END + right METADATA # Right amplifier + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR DATASEC + CELL.XPARITY S32 -1 # This cell is read out in the opposite direction + CELL.X0 S32 2048 + CELL.Y0 S32 1 + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.NAME STR EXPNUM + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.FOCUS STR TELFOCUS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + FPA.TEMP STR DETTEM + FPA.EXPOSURE STR EXPTIME + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CHIP.XSIZE S32 2048 + CHIP.YSIZE S32 4612 + CELL.XSIZE S32 1024 + CELL.YSIZE S32 4612 + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.YPARITY S32 1 + + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA + ccd00 S32 0 + ccd01 S32 2048 + ccd02 S32 4096 + ccd03 S32 6144 + ccd04 S32 8192 + ccd05 S32 10240 + ccd06 S32 12288 + ccd07 S32 14336 + ccd08 S32 16384 + ccd09 S32 0 + ccd10 S32 2048 + ccd11 S32 4096 + ccd12 S32 6144 + ccd13 S32 8192 + ccd14 S32 10240 + ccd15 S32 12288 + ccd16 S32 14336 + ccd17 S32 16384 + ccd18 S32 0 + ccd19 S32 2048 + ccd20 S32 4096 + ccd21 S32 6144 + ccd22 S32 8192 + ccd23 S32 10240 + ccd24 S32 12288 + ccd25 S32 14336 + ccd26 S32 16384 + ccd27 S32 0 + ccd28 S32 2048 + ccd29 S32 4096 + ccd30 S32 6144 + ccd31 S32 8192 + ccd32 S32 10240 + ccd33 S32 12288 + ccd34 S32 14336 + ccd35 S32 16384 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA + ccd00 S32 18447 + ccd01 S32 18447 + ccd02 S32 18447 + ccd03 S32 18447 + ccd04 S32 18447 + ccd05 S32 18447 + ccd06 S32 18447 + ccd07 S32 18447 + ccd08 S32 18447 + ccd09 S32 13835 + ccd10 S32 13835 + ccd11 S32 13835 + ccd12 S32 13835 + ccd13 S32 13835 + ccd14 S32 13835 + ccd15 S32 13835 + ccd16 S32 13835 + ccd17 S32 13835 + ccd18 S32 4612 + ccd19 S32 4612 + ccd20 S32 4612 + ccd21 S32 4612 + ccd22 S32 4612 + ccd23 S32 4612 + ccd24 S32 4612 + ccd25 S32 4612 + ccd26 S32 4612 + ccd27 S32 0 + ccd28 S32 0 + ccd29 S32 0 + ccd30 S32 0 + ccd31 S32 0 + ccd32 S32 0 + ccd33 S32 0 + ccd34 S32 0 + ccd35 S32 0 + END + CHIP.XPARITY S32 1 + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA + ccd00 S32 -1 + ccd01 S32 -1 + ccd02 S32 -1 + ccd03 S32 -1 + ccd04 S32 -1 + ccd05 S32 -1 + ccd06 S32 -1 + ccd07 S32 -1 + ccd08 S32 -1 + ccd09 S32 -1 + ccd10 S32 -1 + ccd11 S32 -1 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 + ccd15 S32 -1 + ccd16 S32 -1 + ccd17 S32 -1 + ccd18 S32 1 + ccd19 S32 1 + ccd20 S32 1 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 + ccd24 S32 1 + ccd25 S32 1 + ccd26 S32 1 + ccd27 S32 1 + ccd28 S32 1 + ccd29 S32 1 + ccd30 S32 1 + ccd31 S32 1 + ccd32 S32 1 + ccd33 S32 1 + ccd34 S32 1 + ccd35 S32 1 + END +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# FPA.BIAS METADATA +# TABLE STR Camera +# COLUMN STR gain +# chipId STR {CHIP.NAME} +# cellId STR {CELL.NAME} +# time STR {CELL.TIME} +# END +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD + CELL.X0 STR FORTRAN + CELL.Y0 STR FORTRAN +END Index: /branches/rel-1-1/ippconfig/megacam/format_spliced.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/format_spliced.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/format_spliced.config (revision 12167) @@ -0,0 +1,263 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The spliced MecaCam data is stored in single extensions for each chip + +# How to recognise this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam + EXTEND BOOL T + NEXTEND S32 36 +END + +FILE METADATA + # How to read this data + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CHIP # The extensions represent chips + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier + CHIP.NAME STR EXTNAME # An extension keyword for unique identifie +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:component cell + ccd00 STR ccd00:LeftAmp:left ccd00:RightAmp:right + ccd01 STR ccd01:LeftAmp:left ccd01:RightAmp:right + ccd02 STR ccd02:LeftAmp:left ccd02:RightAmp:right + ccd03 STR ccd03:LeftAmp:left ccd03:RightAmp:right + ccd04 STR ccd04:LeftAmp:left ccd04:RightAmp:right + ccd05 STR ccd05:LeftAmp:left ccd05:RightAmp:right + ccd06 STR ccd06:LeftAmp:left ccd06:RightAmp:right + ccd07 STR ccd07:LeftAmp:left ccd07:RightAmp:right + ccd08 STR ccd08:LeftAmp:left ccd08:RightAmp:right + ccd09 STR ccd09:LeftAmp:left ccd09:RightAmp:right + ccd10 STR ccd10:LeftAmp:left ccd10:RightAmp:right + ccd11 STR ccd11:LeftAmp:left ccd11:RightAmp:right + ccd12 STR ccd12:LeftAmp:left ccd12:RightAmp:right + ccd13 STR ccd13:LeftAmp:left ccd13:RightAmp:right + ccd14 STR ccd14:LeftAmp:left ccd14:RightAmp:right + ccd15 STR ccd15:LeftAmp:left ccd15:RightAmp:right + ccd16 STR ccd16:LeftAmp:left ccd16:RightAmp:right + ccd17 STR ccd17:LeftAmp:left ccd17:RightAmp:right + ccd18 STR ccd18:LeftAmp:left ccd18:RightAmp:right + ccd19 STR ccd19:LeftAmp:left ccd19:RightAmp:right + ccd20 STR ccd20:LeftAmp:left ccd20:RightAmp:right + ccd21 STR ccd21:LeftAmp:left ccd21:RightAmp:right + ccd22 STR ccd22:LeftAmp:left ccd22:RightAmp:right + ccd23 STR ccd23:LeftAmp:left ccd23:RightAmp:right + ccd24 STR ccd24:LeftAmp:left ccd24:RightAmp:right + ccd25 STR ccd25:LeftAmp:left ccd25:RightAmp:right + ccd26 STR ccd26:LeftAmp:left ccd26:RightAmp:right + ccd27 STR ccd27:LeftAmp:left ccd27:RightAmp:right + ccd28 STR ccd28:LeftAmp:left ccd28:RightAmp:right + ccd29 STR ccd29:LeftAmp:left ccd29:RightAmp:right + ccd30 STR ccd30:LeftAmp:left ccd30:RightAmp:right + ccd31 STR ccd31:LeftAmp:left ccd31:RightAmp:right + ccd32 STR ccd32:LeftAmp:left ccd32:RightAmp:right + ccd33 STR ccd33:LeftAmp:left ccd33:RightAmp:right + ccd34 STR ccd34:LeftAmp:left ccd34:RightAmp:right + ccd35 STR ccd35:LeftAmp:left ccd35:RightAmp:right +END + +# Specify the cells +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECA + CELL.TRIMSEC STR TSECA + CELL.X0 S32 0 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINA + END + + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECB + CELL.TRIMSEC STR TSECB + CELL.X0 S32 1024 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINB + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.FOCUS STR TELFOCUS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + FPA.TEMP STR DETTEM + FPA.EXPOSURE STR EXPTIME + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CHIP.XSIZE S32 2048 + CHIP.YSIZE S32 4612 + CELL.XSIZE S32 1024 + CELL.YSIZE S32 4612 + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA + ccd00 S32 0 + ccd01 S32 2048 + ccd02 S32 4096 + ccd03 S32 6144 + ccd04 S32 8192 + ccd05 S32 10240 + ccd06 S32 12288 + ccd07 S32 14336 + ccd08 S32 16384 + ccd09 S32 0 + ccd10 S32 2048 + ccd11 S32 4096 + ccd12 S32 6144 + ccd13 S32 8192 + ccd14 S32 10240 + ccd15 S32 12288 + ccd16 S32 14336 + ccd17 S32 16384 + ccd18 S32 0 + ccd19 S32 2048 + ccd20 S32 4096 + ccd21 S32 6144 + ccd22 S32 8192 + ccd23 S32 10240 + ccd24 S32 12288 + ccd25 S32 14336 + ccd26 S32 16384 + ccd27 S32 0 + ccd28 S32 2048 + ccd29 S32 4096 + ccd30 S32 6144 + ccd31 S32 8192 + ccd32 S32 10240 + ccd33 S32 12288 + ccd34 S32 14336 + ccd35 S32 16384 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA + ccd00 S32 18447 + ccd01 S32 18447 + ccd02 S32 18447 + ccd03 S32 18447 + ccd04 S32 18447 + ccd05 S32 18447 + ccd06 S32 18447 + ccd07 S32 18447 + ccd08 S32 18447 + ccd09 S32 13835 + ccd10 S32 13835 + ccd11 S32 13835 + ccd12 S32 13835 + ccd13 S32 13835 + ccd14 S32 13835 + ccd15 S32 13835 + ccd16 S32 13835 + ccd17 S32 13835 + ccd18 S32 4612 + ccd19 S32 4612 + ccd20 S32 4612 + ccd21 S32 4612 + ccd22 S32 4612 + ccd23 S32 4612 + ccd24 S32 4612 + ccd25 S32 4612 + ccd26 S32 4612 + ccd27 S32 0 + ccd28 S32 0 + ccd29 S32 0 + ccd30 S32 0 + ccd31 S32 0 + ccd32 S32 0 + ccd33 S32 0 + ccd34 S32 0 + ccd35 S32 0 + END + CHIP.XPARITY S32 1 + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA + ccd00 S32 -1 + ccd01 S32 -1 + ccd02 S32 -1 + ccd03 S32 -1 + ccd04 S32 -1 + ccd05 S32 -1 + ccd06 S32 -1 + ccd07 S32 -1 + ccd08 S32 -1 + ccd09 S32 -1 + ccd10 S32 -1 + ccd11 S32 -1 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 + ccd15 S32 -1 + ccd16 S32 -1 + ccd17 S32 -1 + ccd18 S32 1 + ccd19 S32 1 + ccd20 S32 1 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 + ccd24 S32 1 + ccd25 S32 1 + ccd26 S32 1 + ccd27 S32 1 + ccd28 S32 1 + ccd29 S32 1 + ccd30 S32 1 + ccd31 S32 1 + ccd32 S32 1 + ccd33 S32 1 + ccd34 S32 1 + ccd35 S32 1 + END +END + + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + Index: /branches/rel-1-1/ippconfig/megacam/format_split.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/format_split.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/format_split.config (revision 12167) @@ -0,0 +1,263 @@ +# "mcshort" is a MegaCam camera with only the central six chips --- it's faster than the entire FPA. +# The spliced MecaCam data is stored in single extensions for each chip + +# How to recognise this type +RULE METADATA + TELESCOP STR CFHT 3.6m + DETECTOR STR MegaCam +END + +FILE METADATA + # How to read this data + PHU STR CHIP # The FITS file represents an entire FPA + EXTENSIONS STR NONE # The extensions represent chips + FPA.NAME STR EXPNUM # A PHU keyword for unique identifier + CHIP.NAME STR EXTNAME # An extension keyword for unique identifie + CONTENT STR {CHIP.NAME} # Key to the CONTENTS menu +END + +# What's in the FITS file? +CONTENTS METADATA + # Extension name, chip name:component cell + ccd00 STR ccd00:LeftAmp:left ccd00:RightAmp:right + ccd01 STR ccd01:LeftAmp:left ccd01:RightAmp:right + ccd02 STR ccd02:LeftAmp:left ccd02:RightAmp:right + ccd03 STR ccd03:LeftAmp:left ccd03:RightAmp:right + ccd04 STR ccd04:LeftAmp:left ccd04:RightAmp:right + ccd05 STR ccd05:LeftAmp:left ccd05:RightAmp:right + ccd06 STR ccd06:LeftAmp:left ccd06:RightAmp:right + ccd07 STR ccd07:LeftAmp:left ccd07:RightAmp:right + ccd08 STR ccd08:LeftAmp:left ccd08:RightAmp:right + ccd09 STR ccd09:LeftAmp:left ccd09:RightAmp:right + ccd10 STR ccd10:LeftAmp:left ccd10:RightAmp:right + ccd11 STR ccd11:LeftAmp:left ccd11:RightAmp:right + ccd12 STR ccd12:LeftAmp:left ccd12:RightAmp:right + ccd13 STR ccd13:LeftAmp:left ccd13:RightAmp:right + ccd14 STR ccd14:LeftAmp:left ccd14:RightAmp:right + ccd15 STR ccd15:LeftAmp:left ccd15:RightAmp:right + ccd16 STR ccd16:LeftAmp:left ccd16:RightAmp:right + ccd17 STR ccd17:LeftAmp:left ccd17:RightAmp:right + ccd18 STR ccd18:LeftAmp:left ccd18:RightAmp:right + ccd19 STR ccd19:LeftAmp:left ccd19:RightAmp:right + ccd20 STR ccd20:LeftAmp:left ccd20:RightAmp:right + ccd21 STR ccd21:LeftAmp:left ccd21:RightAmp:right + ccd22 STR ccd22:LeftAmp:left ccd22:RightAmp:right + ccd23 STR ccd23:LeftAmp:left ccd23:RightAmp:right + ccd24 STR ccd24:LeftAmp:left ccd24:RightAmp:right + ccd25 STR ccd25:LeftAmp:left ccd25:RightAmp:right + ccd26 STR ccd26:LeftAmp:left ccd26:RightAmp:right + ccd27 STR ccd27:LeftAmp:left ccd27:RightAmp:right + ccd28 STR ccd28:LeftAmp:left ccd28:RightAmp:right + ccd29 STR ccd29:LeftAmp:left ccd29:RightAmp:right + ccd30 STR ccd30:LeftAmp:left ccd30:RightAmp:right + ccd31 STR ccd31:LeftAmp:left ccd31:RightAmp:right + ccd32 STR ccd32:LeftAmp:left ccd32:RightAmp:right + ccd33 STR ccd33:LeftAmp:left ccd33:RightAmp:right + ccd34 STR ccd34:LeftAmp:left ccd34:RightAmp:right + ccd35 STR ccd35:LeftAmp:left ccd35:RightAmp:right +END + +# Specify the cells +CELLS METADATA + left METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECA + CELL.TRIMSEC STR TSECA + CELL.X0 S32 0 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINA + END + + right METADATA + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BSECB + CELL.TRIMSEC STR TSECB + CELL.X0 S32 1024 + CELL.GAIN.SOURCE STR HEADER + CELL.GAIN STR GAINB + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.NAME STR EXPNUM + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + FPA.OBSTYPE STR OBSTYPE + FPA.OBJECT STR CMMTOBS + FPA.FOCUS STR TELFOCUS + FPA.TIME STR MJD-OBS + FPA.TIMESYS STR TIMESYS + FPA.ALT STR TELALT + FPA.AZ STR TELAZ + FPA.TEMP STR DETTEM + FPA.EXPOSURE STR EXPTIME + CHIP.TEMP STR DETTEM + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.READNOISE STR RDNOISE + CELL.SATURATION STR SATURATE + CELL.TIME STR MJD-OBS + CELL.TIMESYS STR TIMESYS + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CHIP.XSIZE S32 2048 + CHIP.YSIZE S32 4612 + CELL.XSIZE S32 1024 + CELL.YSIZE S32 4612 + CELL.READDIR S32 1 # Cell is read in x direction + CELL.BAD S32 0 + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CELL.Y0 S32 0 + CHIP.X0.DEPEND STR CHIP.NAME + CHIP.X0 METADATA + ccd00 S32 0 + ccd01 S32 2048 + ccd02 S32 4096 + ccd03 S32 6144 + ccd04 S32 8192 + ccd05 S32 10240 + ccd06 S32 12288 + ccd07 S32 14336 + ccd08 S32 16384 + ccd09 S32 0 + ccd10 S32 2048 + ccd11 S32 4096 + ccd12 S32 6144 + ccd13 S32 8192 + ccd14 S32 10240 + ccd15 S32 12288 + ccd16 S32 14336 + ccd17 S32 16384 + ccd18 S32 0 + ccd19 S32 2048 + ccd20 S32 4096 + ccd21 S32 6144 + ccd22 S32 8192 + ccd23 S32 10240 + ccd24 S32 12288 + ccd25 S32 14336 + ccd26 S32 16384 + ccd27 S32 0 + ccd28 S32 2048 + ccd29 S32 4096 + ccd30 S32 6144 + ccd31 S32 8192 + ccd32 S32 10240 + ccd33 S32 12288 + ccd34 S32 14336 + ccd35 S32 16384 + END + CHIP.Y0.DEPEND STR CHIP.NAME + CHIP.Y0 METADATA + ccd00 S32 18447 + ccd01 S32 18447 + ccd02 S32 18447 + ccd03 S32 18447 + ccd04 S32 18447 + ccd05 S32 18447 + ccd06 S32 18447 + ccd07 S32 18447 + ccd08 S32 18447 + ccd09 S32 13835 + ccd10 S32 13835 + ccd11 S32 13835 + ccd12 S32 13835 + ccd13 S32 13835 + ccd14 S32 13835 + ccd15 S32 13835 + ccd16 S32 13835 + ccd17 S32 13835 + ccd18 S32 4612 + ccd19 S32 4612 + ccd20 S32 4612 + ccd21 S32 4612 + ccd22 S32 4612 + ccd23 S32 4612 + ccd24 S32 4612 + ccd25 S32 4612 + ccd26 S32 4612 + ccd27 S32 0 + ccd28 S32 0 + ccd29 S32 0 + ccd30 S32 0 + ccd31 S32 0 + ccd32 S32 0 + ccd33 S32 0 + ccd34 S32 0 + ccd35 S32 0 + END + CHIP.XPARITY S32 1 + CHIP.YPARITY.DEPEND STR CHIP.NAME + CHIP.YPARITY METADATA + ccd00 S32 -1 + ccd01 S32 -1 + ccd02 S32 -1 + ccd03 S32 -1 + ccd04 S32 -1 + ccd05 S32 -1 + ccd06 S32 -1 + ccd07 S32 -1 + ccd08 S32 -1 + ccd09 S32 -1 + ccd10 S32 -1 + ccd11 S32 -1 + ccd12 S32 -1 + ccd13 S32 -1 + ccd14 S32 -1 + ccd15 S32 -1 + ccd16 S32 -1 + ccd17 S32 -1 + ccd18 S32 1 + ccd19 S32 1 + ccd20 S32 1 + ccd21 S32 1 + ccd22 S32 1 + ccd23 S32 1 + ccd24 S32 1 + ccd25 S32 1 + ccd26 S32 1 + ccd27 S32 1 + ccd28 S32 1 + ccd29 S32 1 + ccd30 S32 1 + ccd31 S32 1 + ccd32 S32 1 + ccd33 S32 1 + ccd34 S32 1 + ccd35 S32 1 + END +END + + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# CELL.GAIN dbEntry Camera gain chipId,cellId CHIP.NAME,CELL.NAME +# CELL.READNOISE dbEntry Camera readNoise chipId,cellId CHIP.NAME,CELL.NAME + +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR MJD + CELL.TIME STR MJD +END + Index: /branches/rel-1-1/ippconfig/megacam/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/ppImage.config (revision 12167) @@ -0,0 +1,51 @@ +### ppImage recipe configuration file for Megacam + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +OVERSCAN.FIT STR NONE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 0 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# for a test, turn off selected detrend types +OVERSCAN BOOL FALSE # Overscan subtraction +BIAS BOOL FALSE # Bias subtraction +DARK BOOL TRUE # Dark subtraction +FLAT BOOL TRUE # Flat-field normalisation + +# megacam needs fringe subtraction +FRINGE BOOL TRUE # Fringe subtraction + +# this table lists extra constraints which should be applied when +# selecting the detrend images. +# note: camera and time are always applied + +DETREND.CONSTRAINTS METADATA + BIAS METADATA + END + DARK METADATA + # EXPTIME STR FPA.EXPOSURE + END + FLAT METADATA + FILTER STR FPA.FILTERID + DETTYPE STR DOMEFLAT.RAW +# VERSION STR SKYFLAT.RAW +# VERSION STR DOMEFLAT.CORR.XX +# VERSION STR SKYFLAT.CORR + END + FLAT_CORRECTION METADATA + FILTER STR FPA.FILTER + END + FRINGE METADATA + FILTER STR FPA.FILTER + AIRMASS STR FPA.AIRMASS + TWILIGHT STR FPA.TWILIGHT + END + SHUTTER METADATA + END +END + +# only apply the fringe for these filters +FRINGE.FILTERS MULTI +FRINGE.FILTERS STR r +FRINGE.FILTERS STR i +FRINGE.FILTERS STR z Index: /branches/rel-1-1/ippconfig/megacam/ppMerge.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/ppMerge.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/ppMerge.config (revision 12167) @@ -0,0 +1,44 @@ + +# Bias combination --- don't want min/max rejection +PPMERGE_BIAS METADATA + REJ F32 3.0 # Rejection threshold (sigma) + ITER S32 2 # Number of rejection iterations + FRACHIGH F32 0.0 # Fraction of high pixels to reject immediately + FRACLOW F32 0.0 # Fraction of low pixels to reject immediately + WEIGHTS BOOL FALSE # Use image weights? + COMBINE STR CLIPPED # Statistic to use for combination: +END + +# Dark combination --- don't want min/max rejection +# More aggressive clipping than bias, so as to remove CRs +PPMERGE_DARK METADATA + REJ F32 2.0 # Rejection threshold (sigma) + ITER S32 4 # Number of rejection iterations + FRACHIGH F32 0.0 # Fraction of high pixels to reject immediately + FRACLOW F32 0.0 # Fraction of low pixels to reject immediately + WEIGHTS BOOL FALSE # Use image weights? + COMBINE STR CLIPPED # Statistic to use for combination: +END + +# Flat combination --- use min/max rejection +PPMERGE_FLAT METADATA + REJ F32 3.0 # Rejection threshold (sigma) + ITER S32 1 # Number of rejection iterations + FRACHIGH F32 0.3 # Fraction of high pixels to reject immediately + FRACLOW F32 0.1 # Fraction of low pixels to reject immediately + NKEEP S32 5 # Minimum number of pixels in stack to keep + MASKVAL S32 0xff # Mask value for input data + WEIGHTS BOOL TRUE # Use image weights? + COMBINE STR MEAN # Statistic to use for combination: +END + + +# Fringe combination --- already included in default, above +PPMERGE_FRINGE METADATA + FRACHIGH F32 0.1 # Fraction of high pixels to reject immediately + WEIGHTS BOOL TRUE # Use image weights? +END + +# Mask generation --- already included in default, above +PPMERGE_MASK METADATA +END Index: /branches/rel-1-1/ippconfig/megacam/ppStats.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/ppStats.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/ppStats.config (revision 12167) @@ -0,0 +1,12 @@ +### ppStats recipe +SAMPLE F32 0.1 # Fraction of cell to sample +MASKVAL U8 0xff # Mask value to use for statistics + +# Define the outputs as MULTI +HEADER MULTI +CONCEPT MULTI +STAT MULTI + +# Values to return +STAT STR ROBUST_MEDIAN # Background estimator +STAT STR ROBUST_STDEV # Background standard deviation estimator Index: /branches/rel-1-1/ippconfig/megacam/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/psastro.config (revision 12167) @@ -0,0 +1,36 @@ + +# astrometry matching parameters + +# nominal plate scale (microns / pixel) +# PSASTRO.PLATE.SCALE F32 13.5 +PSASTRO.PLATE.SCALE F32 1.0 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -0.0851 +PSASTRO.GRID.MAX.ANGLE F32 +0.0851 +PSASTRO.GRID.DEL.ANGLE F32 0.0170 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 1000. +PSASTRO.GRID.SCALE F32 50 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# pmAstromRadiusMatch +# use plate-scale to make this in pixels? +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +PSASTRO.CHIP.NX S32 1 # fit order +PSASTRO.CHIP.NY S32 1 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + Index: /branches/rel-1-1/ippconfig/megacam/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/megacam/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/megacam/psphot.config (revision 12167) @@ -0,0 +1,84 @@ + +#SAVE.BACKMDL BOOL TRUE +#SAVE.BACKGND BOOL TRUE +#SAVE.BACKSUB BOOL TRUE +#SAVE.RESID BOOL TRUE +#SAVE.PSF BOOL TRUE +#LOAD.PSF BOOL FALSE + +# image noise parameters +RDNOISE STR HD:RDNOISE # read-noise in electrons +GAIN STR HD:GAIN # electrons / DN +ZERO_POINT F32 25.000 # zero point used by DVO + +# background model : +BACKGROUND.XBIN S32 128 +BACKGROUND.YBIN S32 128 + +# masking parameters +XMIN F32 2 # minimum valid x-coord +XMAX F32 -2 # maximum valid x-coord +YMIN F32 2 # minimum valid y-coord +YMAX F32 -2 # maximum valid y-coord +SATURATION F32 50000 # saturation level on this chip +MIN_VALID_PIXEL F32 1 # saturation level on this chip + +# image statistics parameters +IMSTATS_NPIX S32 1000 # number of pixels to use for sky estimate boxes: + +# peak finding +PEAKS_SMOOTH_SIGMA F32 1.0 # smoothing kernel sigma in pixels +PEAKS_SMOOTH_NSIGMA F32 3.0 # smoothing kernel width in sigmas +# PEAKS_NSIGMA_LIMIT F32 10.0 # peak significance threshold +PEAKS_NSIGMA_LIMIT F32 25.0 # peak significance threshold + +# basic object statistics +SKY_INNER_RADIUS F32 15 # square annulus for local sky measurement +SKY_OUTER_RADIUS F32 25 # square annulus for local sky measurement +PSF_MOMENTS_RADIUS F32 3 # calculate initial source moments with this radius +PSF_SN_LIM F32 100 # minimum S/N for stars used for PSF model +PSF_MAX_NSTARS S32 300 # limit number of stars used for PSF model + +# PSF model parameters : choose the PSF model +# list as many PSF_MODEL options as desired +# PSF_MODEL MULTI +PSF_MODEL STR PS_MODEL_QGAUSS +# PSF_MODEL STR PS_MODEL_GAUSS +# PSF_MODEL STR PS_MODEL_PGAUSS +# PSF_MODEL STR PS_MODEL_TGAUSS ## not well tested, not very successful + +MOMENTS_SCALE F32 0.1 +MOMENTS_SN_MIN F32 30.0 +MOMENTS_SX_MAX F32 3.0 +MOMENTS_SY_MAX F32 3.0 +MOMENTS_AR_MAX F32 1.5 # maximum axial ratio: 1 / AR < (sx / sy) < AR + +PSF_FIT_RADIUS F32 15.0 # fitting radius for test PSF model +PSF_REF_RADIUS F32 25.0 # aperture magnitudes are scaled via + +# PSF-like source model parameters +PSF_FIT_NSIGMA F32 1.0 # significance for pixel included in fit +PSF_FIT_PADDING F32 5.0 # extra annulus to use for fit +PSF_SHAPE_NSIGMA F32 3.0 # max significance for shape variation +PSF_MIN_SN F32 2.0 # reject objects below this significance +PSF_MAX_CHI F32 50.0 # reject objects worse that this + +# EXTended source model parameters +EXT_MODEL STR PS_MODEL_PGAUSS +EXT_MIN_SN F32 50.0 # fit galaxies above this S/N limit +EXT_FIT_NSIGMA F32 1 # significance for pixel included in fit +EXT_FIT_PADDING F32 5 # extra annulus to use for fit +EXT_MOMENTS_RADIUS F32 9 + +FITMODE STR BLEND +DEBLEND_PEAK_FRACTION F32 0.1 +DEBLEND_SKY_NSIGMA F32 10.0 + +APTREND STR SKYSAT +FULL_FIT_SN_LIM F32 50.0 +AP_MIN_SN F32 50.0 + +# BREAK_POINT STR PEAKS +# PEAKS_OUTPUT_FILE STR peaks.dat +# MOMENTS_OUTPUT_FILE STR moments.dat +# ANALYSIS_REGION STR [1000:1600,2800:3400] Index: /branches/rel-1-1/ippconfig/recipes/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/recipes/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/ippconfig/recipes/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/recipes/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/Makefile.am (revision 12167) @@ -0,0 +1,19 @@ + +installdir = $(datadir)/ippconfig/recipes + +install_files = \ + ppImage.config \ + ppMerge.config \ + ppStac.config \ + ppStats.config \ + psastro.config \ + psphot.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/recipes/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/ppImage.config (revision 12167) @@ -0,0 +1,328 @@ +### ppImage recipe configuration file +### Here we have turned on our 'best guess' defaults for a simple camera +### Camera-specific options may be turned on by recipes in the camera configuration + +# List of tasks to perform +NONLIN BOOL FALSE # Non-linearity correction; not implemented +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL TRUE # Dark subtraction +SHUTTER BOOL FALSE # Shutter correction +FLAT BOOL TRUE # Flat-field normalisation +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0xff # only mask pixels matching this bitmask +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE # Astrometry per chip? +ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? + +# output data formats to save +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +NONLIN.DATA STR nonlin.dat # Filename for lookup table + +# examples of other possible non-linearity correction representations +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL TRUE # Reduce overscan to a single value? +OVERSCAN.FIT STR NONE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# Fringe subtraction options +FRINGE.ITER S32 10 # Number of rejection iterations for fringe solution +FRINGE.REJ F32 2.0 # Rejection threshold for fringe solution +FRINGE.KEEP F32 0.5 # Minimum fraction to keep in fringe solution + +# binned output image options +BIN1.XBIN S32 4 +BIN1.YBIN S32 4 +BIN2.XBIN S32 16 +BIN2.YBIN S32 16 + +PPIMAGE.JPEG1 METADATA + COLORMAP STR -greyscale + SCALE.MODE STR RANGE + SCALE.MIN F32 -5.0 + SCALE.MAX F32 20.0 +END + +PPIMAGE.JPEG2 METADATA + COLORMAP STR +greyscale + SCALE.MODE STR FRACTION + SCALE.MIN STR 0.50 + SCALE.MAX STR 2.00 +END + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} + +################################################################################ +# Diffferent processing options, which may be loaded symbolically +################################################################################ + +# No operation except potential normalisation +PPIMAGE_N METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan subtraction only +PPIMAGE_O METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Bias subtraction only +PPIMAGE_B METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Dark subtraction only +PPIMAGE_D METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Shutter correction only +PPIMAGE_S METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Flat-fielding only +PPIMAGE_F METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Fringe correction only +PPIMAGE_R METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Photometry only +PPIMAGE_P METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL TRUE # Source identification and photometry +END + +# Photometry & Astrometry +PPIMAGE_A METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL TRUE # Source identification and photometry +END + +# Overscan, bias +PPIMAGE_OB METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan, bias, dark +PPIMAGE_OBD METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan, bias, dark, shutter +PPIMAGE_OBDS METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan, bias, dark, shutter, flat-field +PPIMAGE_OBDSF METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL TRUE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan, bias, dark, shutter, flat-field, fringe +PPIMAGE_OBDSFR METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL TRUE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom +PPIMAGE_OBDSFRP METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL TRUE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom, astrom +PPIMAGE_OBDSFRA METADATA + OVERSCAN BOOL TRUE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL TRUE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction + BIN1.FITS BOOL TRUE # Save 1st binned chip image? + BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL TRUE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Save JPEG from BIN1 +PPIMAGE_J1 METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BASE.FITS BOOL FALSE # Save base image? + BIN1.FITS BOOL FALSE # Save 1st binned chip image? + BIN2.FITS BOOL FALSE # Save 2nd binned chip image? + BIN1.JPEG BOOL TRUE # Save 1st binned jpeg? + BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + BIN1.XBIN S32 1 # Image is already binned + BIN1.YBIN S32 1 # Image is already binned + BIN2.XBIN S32 1 # Image is already binned + BIN2.YBIN S32 1 # Image is already binned +END + +# Save JPEG from BIN2 +PPIMAGE_J2 METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + BASE.FITS BOOL FALSE # Save base image? + BIN1.FITS BOOL FALSE # Save 1st binned chip image? + BIN2.FITS BOOL FALSE # Save 2nd binned chip image? + BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? + BIN2.JPEG BOOL TRUE # Save 2nd binned jpeg? + BIN1.XBIN S32 1 # Image is already binned + BIN1.YBIN S32 1 # Image is already binned + BIN2.XBIN S32 1 # Image is already binned + BIN2.YBIN S32 1 # Image is already binned +END Index: /branches/rel-1-1/ippconfig/recipes/ppMerge.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/ppMerge.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/ppMerge.config (revision 12167) @@ -0,0 +1,71 @@ +# Recipe configuration for ppMerge + +ROWS S32 512 # Number of rows to read at once +ELECTRONS F32 100.0 # Minimum number of electrons for useful signal +SAMPLE S32 100 # Sampling factor for measuring the background +REJ F32 3.0 # Rejection threshold (sigma) +ITER S32 1 # Number of rejection iterations +FRACHIGH F32 0.0 # Fraction of high pixels to reject immediately +FRACLOW F32 0.0 # Fraction of low pixels to reject immediately +NKEEP S32 5 # Minimum number of pixels in stack to keep +FRINGE.NUM S32 10000 # Number of fringe regions +FRINGE.SIZE S32 5 # Half-size of fringe regions +FRINGE.XSMOOTH S32 5 # Number of smoothing regions in x +FRINGE.YSMOOTH S32 11 # Number of smoothing regions in y +SHUTTER.SIZE S32 128 # Size for shutter measurement regions +SHUTTER.ITER S32 1 # Number of iterations for shutter measurement +SHUTTER.REJECT F32 2 # Rejection limit for shutter measurement +MASK.SUSPECT F32 5.0 # Threshold for suspect pixels (sigma) +MASK.BAD F32 -4.0 # Threshold for bad pixels (sigma) +MASKVAL S32 0xff # Mask value for input data +COMBINE STR CLIPPED # Statistic to use for combination +MEAN STR ROBUST_MEDIAN # Statistic to use to measure the mean +STDEV STR ROBUST_STDEV # Statistic to use to measure the stdev + + +# Bias combination --- don't want min/max rejection +PPMERGE_BIAS METADATA + REJ F32 3.0 # Rejection threshold (sigma) + ITER S32 2 # Number of rejection iterations + FRACHIGH F32 0.0 # Fraction of high pixels to reject immediately + FRACLOW F32 0.0 # Fraction of low pixels to reject immediately + WEIGHTS BOOL FALSE # Use image weights? + MASKVAL S32 0 # Mask value for input data + COMBINE STR CLIPPED # Statistic to use for combination: +END + + +# Dark combination --- don't want min/max rejection +# More aggressive clipping than bias, so as to remove CRs +PPMERGE_DARK METADATA + REJ F32 2.0 # Rejection threshold (sigma) + ITER S32 4 # Number of rejection iterations + FRACHIGH F32 0.0 # Fraction of high pixels to reject immediately + FRACLOW F32 0.0 # Fraction of low pixels to reject immediately + WEIGHTS BOOL FALSE # Use image weights? + MASKVAL S32 0 # Mask value for input data + COMBINE STR CLIPPED # Statistic to use for combination: +END + +# Flat combination --- use min/max rejection +PPMERGE_FLAT METADATA + REJ F32 3.0 # Rejection threshold (sigma) + ITER S32 1 # Number of rejection iterations + FRACHIGH F32 0.3 # Fraction of high pixels to reject immediately + FRACLOW F32 0.1 # Fraction of low pixels to reject immediately + NKEEP S32 5 # Minimum number of pixels in stack to keep + MASKVAL S32 0xff # Mask value for input data + WEIGHTS BOOL TRUE # Use image weights? + COMBINE STR MEAN # Statistic to use for combination: +END + + +# Fringe combination --- already included in default, above +PPMERGE_FRINGE METADATA + FRACHIGH F32 0.1 # Fraction of high pixels to reject immediately + WEIGHTS BOOL TRUE # Use image weights? +END + +# Mask generation --- already included in default, above +PPMERGE_MASK METADATA +END Index: /branches/rel-1-1/ippconfig/recipes/ppStac.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/ppStac.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/ppStac.config (revision 12167) @@ -0,0 +1,5 @@ +# Recipe configuration for ppMerge +MASKVAL S32 0xff # Mask value for input data +COMBINE STR MEAN # Statistic to use for combination +REJ F32 3.0 # Rejection threshold (sigma) +ITER S32 1 # Number of rejection iterations Index: /branches/rel-1-1/ippconfig/recipes/ppStats.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/ppStats.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/ppStats.config (revision 12167) @@ -0,0 +1,41 @@ +### Default ppStats recipe + +# Options governing statistics +SAMPLE F32 0.1 # Fraction of cell to sample +MASKVAL U8 0xff # Mask value to use for statistics + +# Define the outputs as MULTI +HEADER MULTI +CONCEPT MULTI +STAT MULTI + +# Values to return +STAT STR ROBUST_MEDIAN # Background estimator +STAT STR ROBUST_STDEV # Background standard deviation estimator + +PPSTATS_PHASE0 METADATA + ### ppStats recipe for Phase 0 with MegaCam + + # Options governing statistics + SAMPLE F32 0.1 # Fraction of cell to sample + MASKVAL U8 0xff # Mask value to use for statistics + + # Define the outputs as MULTI + HEADER MULTI + CONCEPT MULTI + STAT MULTI + + # Values to return + CONCEPT STR FPA.OBJECT # Object name + CONCEPT STR FPA.OBSTYPE # Observation type + CONCEPT STR FPA.FILTER # Filter + CONCEPT STR FPA.RA FPA.DEC # Telescope pointing + CONCEPT STR FPA.AIRMASS # Airmass + CONCEPT STR FPA.ALT FPA.AZ # Telescopy alt/az + CONCEPT STR FPA.POSANGLE # Rotator angle + CONCEPT STR FPA.TIME # Time of exposure + CONCEPT STR CHIP.TEMP # Detector temperature + CONCEPT STR CELL.EXPOSURE # Exposure time + STAT STR ROBUST_MEDIAN # Background estimator + STAT STR ROBUST_STDEV # Background standard deviation estimator +END Index: /branches/rel-1-1/ippconfig/recipes/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/psastro.config (revision 12167) @@ -0,0 +1,58 @@ + +# perform single-chip astrometry? +PSASTRO.CHIP.MODE BOOL TRUE + +# nominal plate scale (microns / pixel) +PSASTRO.PIXEL.SCALE F32 13.5 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -0.0851 +PSASTRO.GRID.MAX.ANGLE F32 +0.0851 +PSASTRO.GRID.DEL.ANGLE F32 0.0170 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 1000. +PSASTRO.GRID.SCALE F32 50 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# single-chip radius match in pixels +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +PSASTRO.CHIP.ORDER S32 1 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + +PSASTRO.MAX.ERROR F32 1.5 # max allow error for valid solution (UNITS?) +PSASTRO.MIN.NSTAR S32 3 # min fitted stars in solution +PSASTRO.MAX.NSTAR S32 300 # max stars accepted for fitting + +MAG_MAX F32 23.0 ## XXX change name to PSASTRO.something? + +# option may be MAX, MIN, or VALUE. for VALUE, look up +# plate scale for each chip in the concepts +PSASTRO.COMMON.SCALE.OPTION STR MAX + +# mosaic-mode radius match in pixels? +PSASTRO.MOSAIC.RADIUS.N0 F32 8 +PSASTRO.MOSAIC.RADIUS.N1 F32 6 +PSASTRO.MOSAIC.RADIUS.N2 F32 4 + +# Mosaic Astrometry options +PSASTRO.MOSAIC.MODE BOOL FALSE +PSASTRO.MOSAIC.CHIP.ORDER S32 3 # fit order +PSASTRO.MOSAIC.ORDER S32 3 # fit order +PSASTRO.MOSAIC.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.MOSAIC.CHIP.NSIGMA F32 3 # fit clipping sigmas + +PSASTRO.MOSAIC.MAX.ERROR F32 1.5 # max allow error for valid solution (UNITS?) +PSASTRO.MOSAIC.MIN.NSTAR S32 6 # min fitted stars in solution Index: /branches/rel-1-1/ippconfig/recipes/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/recipes/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/recipes/psphot.config (revision 12167) @@ -0,0 +1,116 @@ + +# these options turn on different inputs and/or outputs +SAVE.BACKMDL BOOL FALSE +SAVE.BACKGND BOOL FALSE +SAVE.BACKSUB BOOL FALSE +SAVE.RESID BOOL FALSE +SAVE.PSF BOOL FALSE +LOAD.PSF BOOL FALSE +SAVE.PLOTS BOOL FALSE + +# the zero point is used to set a basic scale for DVO +# XXX it may not currently be read : double check this (EAM) +ZERO_POINT F32 25.000 # zero point used by DVO + +# these parameter govern how the background is measured +BACKGROUND_XBIN S32 128 # size of background superpixels +BACKGROUND_YBIN S32 128 # size of background superpixels +IMSTATS_NPIX S32 10000 # number of pixels to use for sky estimate boxes: + +SKY_BIAS F32 0.0 # offset applied to measured sky (FOR TESTING) +SKY_FIT_ORDER S32 0 +SKY_FIT_LINEAR BOOL FALSE +SKY_STAT STR FITTED_MEAN_V3 # statistic used to measure background +# allowed values for SKY_STAT: +# SAMPLE_MEAN, SAMPLE_MEDIAN, CLIPPED_MEAN, ROBUST_MEAN, ROBUST_QUARTILE, FITTED_MEAN + +# masking parameters (XXX EAM : rework this to use psRegion like ANALYSIS_REGION) +XMIN F32 0 # minimum valid x-coord +XMAX F32 0 # maximum valid x-coord +YMIN F32 0 # minimum valid y-coord +YMAX F32 0 # maximum valid y-coord + +# peak finding +PEAKS_SMOOTH_SIGMA F32 1.0 # smoothing kernel sigma in pixels +PEAKS_SMOOTH_NSIGMA F32 2.0 # smoothing kernel width in sigmas +PEAKS_NSIGMA_LIMIT F32 25.0 # peak significance threshold +PEAKS_NSIGMA_LIMIT_2 F32 5.0 # peak significance threshold + +# parameters to control the selection of the peak in the Sx,Sy plane +MOMENTS_SCALE F32 0.1 +MOMENTS_SN_MIN F32 100.0 # min S/N to measure moments +MOMENTS_SX_MAX F32 3.0 +MOMENTS_SY_MAX F32 3.0 +MOMENTS_AR_MAX F32 1.5 # maximum axial ratio: 1 / AR < (sx / sy) < AR + +# basic object statistics +SKY_INNER_RADIUS F32 15 # square annulus for local sky measurement +SKY_OUTER_RADIUS F32 25 # square annulus for local sky measurement +PSF_MOMENTS_RADIUS F32 3 # calculate initial source moments with this radius +PSF_SN_LIM F32 50 # minimum S/N for stars used for PSF model +PSF_MAX_NSTARS S32 300 # limit number of stars used for PSF model + +# PSF model parameters : choose the PSF model +# list as many PSF_MODEL options as desired +# PSF_MODEL MULTI +PSF_MODEL STR PS_MODEL_GAUSS +# PSF_MODEL STR PS_MODEL_PGAUSS +# PSF_MODEL STR PS_MODEL_QGAUSS +# PSF_MODEL STR PS_MODEL_TGAUSS ## not well tested, not very successful + +# PSF.TREND.MASK must be a 2D polynomial +# the specified values are ignored but define the active components of the polynomial +PSF.TREND.MASK METADATA + NORDER_X S32 2 # number of x orders + NORDER_Y S32 2 # number of y orders + VAL_X00_Y00 F64 1 # polynomial coefficient + VAL_X01_Y00 F64 1 # polynomial coefficient + VAL_X00_Y01 F64 1 # polynomial coefficient + VAL_X02_Y00 F64 1 # polynomial coefficient + VAL_X01_Y01 F64 1 # polynomial coefficient + VAL_X00_Y02 F64 1 # polynomial coefficient + NELEMENTS S32 6 # number of unmasked components +END # folder for 2D polynomial + +PSF_FIT_RADIUS F32 15.0 # fitting radius for test PSF model +PSF_REF_RADIUS F32 25.0 # aperture magnitudes are scaled via + # curve-of-growth to this radius +# PSF-like source model parameters +PSF_FIT_NSIGMA F32 1.0 # significance for pixel included in fit +PSF_FIT_PADDING F32 2.0 # extra annulus to use for fit +PSF_SHAPE_NSIGMA F32 3.0 # max significance for shape variation +PSF_MIN_SN F32 2.0 # reject objects below this significance +PSF_MAX_CHI F32 50.0 # reject objects worse that this +FULL_FIT_SN_LIM F32 50.0 + +# EXTended source model parameters +EXT_MODEL STR PS_MODEL_PGAUSS +EXT_MIN_SN F32 50.0 # fit galaxies above this S/N limit +EXT_FIT_NSIGMA F32 1 # significance for pixel included in fit +EXT_FIT_PADDING F32 5 # extra annulus to use for fit +EXT_MOMENTS_RADIUS F32 9 + +FITMODE STR BLEND +DEBLEND_PEAK_FRACTION F32 0.1 +DEBLEND_SKY_NSIGMA F32 10.0 + +# APTREND STR NONE, CONSTANT, SKYBIAS, SKYSAT, XY_LIN, SKY_XY_LIN, SKYSAT_XY_LIN, ALL +APTREND STR CONSTANT +AP_MIN_SN F32 25.0 + +# test options +# BREAK_POINT may be one of (PEAKS, MOMENTS, PSFMODEL, ENSEMBLE) +# BREAK_POINT STR ENSEMBLE +# PEAKS_OUTPUT_FILE STR peaks.dat +# MOMENTS_OUTPUT_FILE STR moments.dat +# ANALYSIS_REGION STR [1000:1600,2800:3400] +# POISSON_ERRORS BOOL TRUE + +# optional parameter to limit the actual analysis to a fraction of the image +# do not uncomment this in the master psphot.config file +# ANALYSIS_REGION STR [1000:1600,2800:3400] + +IGNORE_GROWTH BOOL FALSE +CONSTANT_PHOTOMETRIC_WEIGHTS BOOL TRUE # Should the photometric code [currently only ensemblePSF] refuse to weight each pixel by it's significance? +INTERPOLATE_AP BOOL TRUE +POISSON_ERRORS BOOL TRUE Index: /branches/rel-1-1/ippconfig/simple/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/simple/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/ippconfig/simple/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/simple/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ + +installdir = $(datadir)/ippconfig/simple + +install_files = \ + camera.config \ + format.config \ + ppImage.config \ + psastro.config \ + psphot.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/simple/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/simple/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/camera.config (revision 12167) @@ -0,0 +1,139 @@ +# Camera configuration file for drop-dead boring camera, consisting of a single chip with single cell. + +# File formats that we know about +FORMATS METADATA + SIMPLE STR simple/format.config +END + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + Chip STR Cell +END + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + B STR B + V STR V + R STR R + I STR I + z STR z +END + +# Recipe options +RECIPES METADATA + PPIMAGE STR simple/ppImage.config # Default: all (normal) options on + PSPHOT STR simple/psphot.config # psphot details +END + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN IMFILE.MEANSTDEV + FLAT MULTI + + BIAS LIMITS * 0 1 20 0.5 20 0 3 20 0 0 0 0.5 + DARK LIMITS * 0 1 0 0.5 0 0 3 20 0 0 0 0.5 + FLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 3 0 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + +FILERULES METADATA + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + INPUT.MASK INPUT none.fits NONE NONE NONE FPA MASK + INPUT.WEIGHT INPUT none.fits NONE NONE NONE FPA WEIGHT + INPUT.PSF INPUT none.fits NONE NONE NONE READOUT PSF + INPUT.SRC INPUT none.fits NONE SMPDATA PHU READOUT CMF + PPIMAGE.BIAS INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.DARK INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.FLAT INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.MASK INPUT @DETDB NONE fpa NONE CHIP IMAGE + PSPHOT.INPUT INPUT none.fits NONE NONE NONE CHIP IMAGE + PSWARP.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + PSWARP.SKYCELL INPUT none.fits NONE NONE NONE FPA IMAGE + PSASTRO.INPUT.CMP INPUT none.fits NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT none.fits NONE SMPDATA PHU CHIP CMF + PSPHOT.PSF.LOAD INPUT {OUTPUT}.psf NONE NONE NONE CHIP PSF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.TYPE FILE.LEVEL DATA.LEVEL FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.mask.fits NONE NONE NONE MASK FPA FPA FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.wt.fits NONE NONE NONE WEIGHT FPA FPA FALSE NONE + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.ch.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE JPEG FPA FPA TRUE SIMPLE + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE JPEG FPA FPA TRUE SIMPLE + PPIMAGE.BIN1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PPIMAGE.BIN2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + + PSWARP.OUTPUT OUTPUT {OUTPUT}.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSWARP.BIN1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSWARP.BIN2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE NONE NONE IMAGE FPA FPA TRUE SIMPLE + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT} NONE NONE NONE RAW FPA FPA TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE NONE SX FPA FPA TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE NONE OBJ FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.cmp NONE NONE NONE CMP FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CMF FPA FPA TRUE NONE + PSPHOT.PSF.SAVE OUTPUT {OUTPUT}.psf NONE NONE NONE PSF FPA FPA TRUE NONE + + PSPHOT.MOMENT.PLT OUTPUT {OUTPUT}.mnt.png NONE NONE NONE KAPA FPA FPA TRUE SIMPLE + PSPHOT.PSFMODEL.PLT OUTPUT {OUTPUT}.psf.png NONE NONE NONE KAPA FPA FPA TRUE SIMPLE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.smp NONE NONE NONE CMP FPA FPA TRUE NONE +END + +# FPA file defines properties of a possible input|output object +# user can set the filename (I|O), filename rules (O), or abstract source (@FILES, @DETDB) (I) +# user can set the extension name, if used +# user can set the file type (IMAGE, JPEG, RAW, SX, OBJ, CMP, CMF) : but these are not variable in most cases! +# user can set the file mode (READ, WRITE), but these must be set by the programmer +# user can set the file depth: only valid for output files +# user can set the data depth: must be >= file depth +# user can set the file format: only valid for newly created FPAs +# user can set the colormap, scaling method, scaling range (JPEG only) +# user can set the extension name for the data and header segments (CMF only) + +# known uses of the filename.xtra, extname.rule, and extname.xtra: +# extname.rule: used to construct output EXTNAME keys (CMF DATA) +# extname.xtra: used to construct output EXTNAME keys (CMF HEAD) + +# extname.rule: used to carry classID to DetDB +# filename.xtra: used to carry detID to DetDB (internal) + +# filename.xtra: used to carry arglist name (internal) + +# filename.xtra: used to define the JPEG colormap +# extname.rule: used to define the JPEG scaling method +# extname.xtra: used to carry arguments of JPEG scaling method Index: /branches/rel-1-1/ippconfig/simple/format.config =================================================================== --- /branches/rel-1-1/ippconfig/simple/format.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/format.config (revision 12167) @@ -0,0 +1,76 @@ +# Drop-dead simple camera with single chip with single cell + +# How to identify this type +RULE METADATA + SIMPLE BOOL TRUE + NAXIS S32 2 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR NAXIS # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR Chip:Cell:amplifier + +# Specify the cell data +CELLS METADATA + amplifier METADATA + CELL.TRIMSEC.SOURCE STR VALUE + CELL.TRIMSEC STR [0:0,0:0] + # alternatives for getting these from the headers + # CELL.TRIMSEC.SOURCE STR HEADER + # CELL.BIASSEC.SOURCE STR VALUE + # CELL.TRIMSEC STR DATASEC + # CELL.BIASSEC STR BIASSEC + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.TELESCOPE STR TELESCOP + FPA.INSTRUMENT STR INSTRUME + FPA.OBSTYPE STR OBSTYPE + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR POSANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.OBJECT STR OBJECT + FPA.TIME STR DATE-OBS UTC-OBS # Date and time + FPA.EXPOSURE STR EXPTIME + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME +# CELL.TIME STR DATE-OBS TIME-OBS # Date and time + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.TIMESYS STR UTC + FPA.RADECSYS STR ICRS + CELL.GAIN F32 1.0 + CELL.READNOISE F32 2.0 + CELL.SATURATION F32 46000 + CELL.BAD F32 0 +# CELL.SATURATION F32 65535 +# CELL.BAD F32 -65535 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 + CELL.X0 S32 0 + CELL.Y0 S32 0 +END + +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR SEPARATE,YEAR.FIRST +END Index: /branches/rel-1-1/ippconfig/simple/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/simple/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/ppImage.config (revision 12167) @@ -0,0 +1,121 @@ +### ppImage recipe configuration file for drop-dead simple camera + +# List of tasks to perform +SHUTTER BOOL FALSE # Shutter correction +DARK BOOL TRUE # Dark correction + +BASE.FITS BOOL TRUE # Save base detrended image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 3 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# How to select the appropriate detrend image +DETREND.CONSTRAINTS METADATA + BIAS METADATA + END + MASK METADATA + END + DARK METADATA +# EXPTIME STR FPA.EXPOSURE + END + FLAT METADATA + FILTER STR FPA.FILTER + END + FRINGE METADATA + FILTER STR FPA.FILTER + END + SHUTTER METADATA + END +END + +######################################################################################## +# Need the following in order to turn off overscan and shutter for the site-level recipe +######################################################################################## + +# Overscan subtraction only +PPIMAGE_O METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Dark subtraction only +PPIMAGE_D METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Shutter correction only +PPIMAGE_S METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark +PPIMAGE_OBD METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter +PPIMAGE_OBDS METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter, flat-field +PPIMAGE_OBDSF METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction +END + +# Overscan, bias, dark, shutter, flat-field, fringe +PPIMAGE_OBDSFR METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL TRUE # Fringe subtraction +END Index: /branches/rel-1-1/ippconfig/simple/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/simple/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/psastro.config (revision 12167) @@ -0,0 +1,36 @@ + +# astrometry matching parameters + +# nominal plate scale (microns / pixel) +# PSASTRO.PLATE.SCALE F32 13.5 +PSASTRO.PLATE.SCALE F32 1.0 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -0.0851 +PSASTRO.GRID.MAX.ANGLE F32 +0.0851 +PSASTRO.GRID.DEL.ANGLE F32 0.0170 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 1000. +PSASTRO.GRID.SCALE F32 50 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# pmAstromRadiusMatch +# use plate-scale to make this in pixels? +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +PSASTRO.CHIP.NX S32 1 # fit order +PSASTRO.CHIP.NY S32 1 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + Index: /branches/rel-1-1/ippconfig/simple/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/simple/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simple/psphot.config (revision 12167) @@ -0,0 +1,24 @@ + +SAVE.BACKMDL BOOL TRUE +SAVE.BACKGND BOOL TRUE +SAVE.BACKSUB BOOL TRUE +SAVE.PLOTS BOOL TRUE +SAVE.RESID BOOL TRUE +SAVE.PSF BOOL TRUE +LOAD.PSF BOOL FALSE + +IMSTATS_NPIX S32 3000 # number of pixels to use for sky estimate boxes: + +PSPHOT_TEST METADATA + SAVE.BACKSUB BOOL FALSE + SAVE.RESID BOOL TRUE +END + +PEAKS_OUTPUT_FILE STR peaks.dat +MOMENTS_OUTPUT_FILE STR moments.dat + +MOMENTS_SN_MIN F32 20.0 # min S/N to measure moments +FULL_FIT_SN_LIM F32 100.0 +EXT_MIN_SN F32 100.0 # fit galaxies above this S/N limit + +PEAKS_NSIGMA_LIMIT F32 10.0 # peak significance threshold Index: /branches/rel-1-1/ippconfig/simtest/.cvsignore =================================================================== --- /branches/rel-1-1/ippconfig/simtest/.cvsignore (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile.in +Makefile Index: /branches/rel-1-1/ippconfig/simtest/Makefile.am =================================================================== --- /branches/rel-1-1/ippconfig/simtest/Makefile.am (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ + +installdir = $(datadir)/ippconfig/simtest + +install_files = \ + camera.config \ + format.config \ + ppImage.config \ + psastro.config \ + psphot.config + +install_DATA = $(install_files) + +install-data-hook: + chmod 0755 $(installdir) + +EXTRA_DIST = $(install_files) + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/ippconfig/simtest/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/simtest/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/camera.config (revision 12167) @@ -0,0 +1,141 @@ +# Camera configuration file for simulation test + +# File formats that we know about +FORMATS METADATA + SIMTEST STR simtest/format.config +END + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + Chip STR Cell +END + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + B STR B + V STR V + R STR R + I STR I + z STR z +END + +# Recipe options +RECIPES METADATA + PPIMAGE STR simtest/ppImage.config # Default: all (normal) options on + PSPHOT STR simtest/psphot.config # psphot details +END + +# Rejection levels for detrend creation +REJECTION METADATA + TYPE LIMITS FILTER EXPECTED IMFILE.MEAN IMFILE.STDEV EXP.MEAN EXP.STDEV EXP.MEANSTDEV ENSEMBLE.MEAN ENSEMBLE.STDEV ENSEMBLE.MEANSTDEV IMFILE.SN EXP.SN IMFILE.MEANSTDEV + FLAT MULTI + + BIAS LIMITS * 0 1 20 0.5 20 0 3 20 0 0 0 0.5 + DARK LIMITS * 0 1 0 0.5 0 0 3 20 0 0 0 0.5 + SHUTTER LIMITS * 0 0 0 0 0 0 0 0 0 0 0 20.0 + FLAT LIMITS * 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS u 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS g 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS r 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS i 0 0 0 0 0 0 0 0 3 0 0 0 +# FLAT LIMITS z 0 0 0 0 0 0 0 0 3 0 0 0 + FRINGE LIMITS * 0 0 0 0 0 0 0 0 0 0 0 0 + +# FILTER is an additional qualifier, and may be "*" (or absent!), in which case it matches everything +# EXPECTED is the expected mean value +# IMFILE.MEAN is the maximum permitted mean value for an imfile, relative to the standard deviation +# IMFILE.STDEV is the maximum permitted standard deviation for an imfile +# EXP.MEAN is the maximum permitted mean value for an exposure, relative to the standard deviation +# EXP.STDEV is the maximum permitted standard deviation for an exposure +# EXP.MEANSTDEV is the maximum permitted mean standard deviation for an exposure relative to the mean +# ENSEMBLE.MEAN is the maximum permitted mean for an ensemble of exposures +# ENSEMBLE.STDEV is the maximum permitted standard deviation for an ensemble of exposures +# ENSEMBLE.MEANSTDEV is the maximum permitted mean standard deviation for an ensemble of exposures +# IMFILE.SN is the minimum permitted signal-to-noise for an imfile +# EXP.SN is the minimum permitted signal-to-noise for an exposure +# These values (all except FILTER) may be zero, in which case no clipping is applied. + +END + +FILERULES METADATA + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + INPUT.MASK INPUT none.fits NONE NONE NONE FPA MASK + INPUT.WEIGHT INPUT none.fits NONE NONE NONE FPA WEIGHT + INPUT.PSF INPUT none.fits NONE NONE NONE READOUT PSF + INPUT.SRC INPUT none.fits NONE SMPDATA PHU READOUT CMF + PPIMAGE.BIAS INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.DARK INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.SHUTTER INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.FLAT INPUT @DETDB NONE fpa NONE CHIP IMAGE + PPIMAGE.MASK INPUT @DETDB NONE fpa NONE CHIP IMAGE + PSPHOT.INPUT INPUT none.fits NONE NONE NONE CHIP IMAGE + PSWARP.INPUT INPUT none.fits NONE NONE NONE FPA IMAGE + PSWARP.SKYCELL INPUT none.fits NONE NONE NONE FPA IMAGE + PSASTRO.INPUT.CMP INPUT none.fits NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT none.fits NONE SMPDATA PHU CHIP CMF + PSPHOT.PSF.LOAD INPUT {OUTPUT}.psf NONE NONE NONE CHIP PSF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.TYPE FILE.LEVEL DATA.LEVEL FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.OUTPUT.MASK OUTPUT {OUTPUT}.mask.fits NONE NONE NONE MASK FPA FPA FALSE NONE + PPIMAGE.OUTPUT.WEIGHT OUTPUT {OUTPUT}.wt.fits NONE NONE NONE WEIGHT FPA FPA FALSE NONE + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.ch.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + + PPIMAGE.JPEG1 OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE JPEG FPA FPA TRUE NONE + PPIMAGE.JPEG2 OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE JPEG FPA FPA TRUE NONE + PPIMAGE.BIN1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PPIMAGE.BIN2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + + PSWARP.OUTPUT OUTPUT {OUTPUT}.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSWARP.BIN1 OUTPUT {OUTPUT}.b1.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSWARP.BIN2 OUTPUT {OUTPUT}.b2.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE NONE NONE IMAGE FPA FPA TRUE NONE + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT} NONE NONE NONE RAW FPA FPA TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE NONE SX FPA FPA TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE NONE OBJ FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.cmp NONE NONE NONE CMP FPA FPA TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CMF FPA FPA TRUE NONE + PSPHOT.PSF.SAVE OUTPUT {OUTPUT}.psf NONE NONE NONE PSF FPA FPA TRUE NONE + + PSPHOT.MOMENT.PLT OUTPUT {OUTPUT}.mnt.png NONE NONE NONE KAPA FPA FPA TRUE NONE + PSPHOT.PSFMODEL.PLT OUTPUT {OUTPUT}.psf.png NONE NONE NONE KAPA FPA FPA TRUE NONE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.smp NONE NONE NONE CMP FPA FPA TRUE NONE +END + +# FPA file defines properties of a possible input|output object +# user can set the filename (I|O), filename rules (O), or abstract source (@FILES, @DETDB) (I) +# user can set the extension name, if used +# user can set the file type (IMAGE, JPEG, RAW, SX, OBJ, CMP, CMF) : but these are not variable in most cases! +# user can set the file mode (READ, WRITE), but these must be set by the programmer +# user can set the file depth: only valid for output files +# user can set the data depth: must be >= file depth +# user can set the file format: only valid for newly created FPAs +# user can set the colormap, scaling method, scaling range (JPEG only) +# user can set the extension name for the data and header segments (CMF only) + +# known uses of the filename.xtra, extname.rule, and extname.xtra: +# extname.rule: used to construct output EXTNAME keys (CMF DATA) +# extname.xtra: used to construct output EXTNAME keys (CMF HEAD) + +# extname.rule: used to carry classID to DetDB +# filename.xtra: used to carry detID to DetDB (internal) + +# filename.xtra: used to carry arglist name (internal) + +# filename.xtra: used to define the JPEG colormap +# extname.rule: used to define the JPEG scaling method +# extname.xtra: used to carry arguments of JPEG scaling method Index: /branches/rel-1-1/ippconfig/simtest/format.config =================================================================== --- /branches/rel-1-1/ippconfig/simtest/format.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/format.config (revision 12167) @@ -0,0 +1,71 @@ +# Simulation test camera with single chip with single cell + +# How to identify this type +RULE METADATA + INSTRUME STR SIMTEST + SIMPLE BOOL TRUE + NAXIS S32 2 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR NONE # There are no extensions + FPA.NAME STR NAXIS # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS STR Chip:Cell:amplifier + +# Specify the cell data +CELLS METADATA + amplifier METADATA + CELL.TRIMSEC.SOURCE STR VALUE + CELL.TRIMSEC STR [0:0,0:0] + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.TELESCOPE STR TELESCOP + FPA.INSTRUMENT STR INSTRUME + FPA.OBSTYPE STR OBSTYPE + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR POSANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.OBJECT STR OBJECT + FPA.TIME STR DATE-OBS UTC-OBS # Date and time + FPA.EXPOSURE STR EXPTIME + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.TIME STR DATE-OBS UTC-OBS # Date and time + CELL.XBIN STR CCDSUM + CELL.YBIN STR CCDSUM + CELL.GAIN STR GAIN + CELL.READNOISE STR RDNOISE +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + FPA.TIMESYS STR UTC + FPA.RADECSYS STR ICRS + CELL.SATURATION F32 65535 + CELL.BAD F32 0 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CELL.XPARITY S32 1 + CELL.YPARITY S32 1 + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 + CELL.X0 S32 0 + CELL.Y0 S32 0 +END + +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + FPA.TIME STR SEPARATE,YEAR.FIRST + CELL.TIME STR SEPARATE,YEAR.FIRST +END Index: /branches/rel-1-1/ippconfig/simtest/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/simtest/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/ppImage.config (revision 12167) @@ -0,0 +1,167 @@ +### ppImage recipe configuration file for simulated test camera + +# List of tasks to perform + +BASE.FITS BOOL TRUE # Save base detrended image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 3 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# How to select the appropriate detrend image +DETREND.CONSTRAINTS METADATA + BIAS METADATA + END + MASK METADATA + END + DARK METADATA + END + FLAT METADATA + FILTER STR FPA.FILTER + END + FRINGE METADATA + FILTER STR FPA.FILTER + END + SHUTTER METADATA + END +END + +######################################################################################## +# Need the following in order to turn off overscan and shutter for the site-level recipe +######################################################################################## + +# Overscan subtraction only +PPIMAGE_O METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Dark subtraction only +PPIMAGE_D METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Shutter correction only +PPIMAGE_S METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL FALSE # Bias subtraction + DARK BOOL FALSE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark +PPIMAGE_OBD METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL FALSE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter +PPIMAGE_OBDS METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL FALSE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field +PPIMAGE_OBDSF METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe +PPIMAGE_OBDSFR METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL FALSE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom +PPIMAGE_OBDSFRP METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL FALSE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END + +# Overscan, bias, dark, shutter, flat-field, fringe, photom, astrom +PPIMAGE_OBDSFRA METADATA + OVERSCAN BOOL FALSE # Overscan subtraction + BIAS BOOL TRUE # Bias subtraction + DARK BOOL TRUE # Dark subtraction + SHUTTER BOOL TRUE # Shutter correction + FLAT BOOL TRUE # Flat-field normalisation + MASK BOOL FALSE # Mask bad pixels + FRINGE BOOL FALSE # Fringe subtraction + PHOTOM BOOL TRUE # Source identification and photometry + ASTROM.CHIP BOOL TRUE # Astrometry per chip? + ASTROM.MOSAIC BOOL FALSE # Astrometry for mosaic? +END Index: /branches/rel-1-1/ippconfig/simtest/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/simtest/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/psastro.config (revision 12167) @@ -0,0 +1,36 @@ + +# astrometry matching parameters + +# nominal plate scale (microns / pixel) +# PSASTRO.PLATE.SCALE F32 13.5 +PSASTRO.PLATE.SCALE F32 1.0 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -0.0851 +PSASTRO.GRID.MAX.ANGLE F32 +0.0851 +PSASTRO.GRID.DEL.ANGLE F32 0.0170 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 1000. +PSASTRO.GRID.SCALE F32 50 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# pmAstromRadiusMatch +# use plate-scale to make this in pixels? +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +PSASTRO.CHIP.NX S32 1 # fit order +PSASTRO.CHIP.NY S32 1 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + Index: /branches/rel-1-1/ippconfig/simtest/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/simtest/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/simtest/psphot.config (revision 12167) @@ -0,0 +1,24 @@ + +SAVE.BACKMDL BOOL TRUE +SAVE.BACKGND BOOL TRUE +SAVE.BACKSUB BOOL TRUE +SAVE.PLOTS BOOL TRUE +SAVE.RESID BOOL TRUE +SAVE.PSF BOOL TRUE +LOAD.PSF BOOL FALSE + +IMSTATS_NPIX S32 3000 # number of pixels to use for sky estimate boxes: + +PSPHOT_TEST METADATA + SAVE.BACKSUB BOOL FALSE + SAVE.RESID BOOL TRUE +END + +PEAKS_OUTPUT_FILE STR peaks.dat +MOMENTS_OUTPUT_FILE STR moments.dat + +MOMENTS_SN_MIN F32 20.0 # min S/N to measure moments +FULL_FIT_SN_LIM F32 100.0 +EXT_MIN_SN F32 100.0 # fit galaxies above this S/N limit + +PEAKS_NSIGMA_LIMIT F32 10.0 # peak significance threshold Index: /branches/rel-1-1/ippconfig/ucam/camera.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/camera.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/camera.config (revision 12167) @@ -0,0 +1,128 @@ +# Camera configuration file for MegaCam: describes the camera + +# File formats that we know about (these are relative to PATH) +FORMATS METADATA + RAW STR ucam/format_raw.config +END + + +# Description of camera --- all the chips and the cells that comprise them +FPA METADATA + chip STR xy00 xy10 xy20 xy30 xy40 xy50 xy60 xy70 xy01 xy11 xy21 xy31 xy41 xy51 xy61 xy71 xy02 xy12 xy22 xy32 xy42 xy52 xy62 xy72 xy03 xy13 xy23 xy33 xy43 xy53 xy63 xy73 xy04 xy14 xy24 xy34 xy44 xy54 xy64 xy74 xy05 xy15 xy25 xy35 xy45 xy55 xy65 xy75 xy06 xy16 xy26 xy36 xy46 xy56 xy66 xy76 xy07 xy17 xy27 xy37 xy47 xy57 xy67 xy77 +END + +# move this elsewhere? we need a lookup table to go from filter ID to abstract name +FILTER.ID METADATA + u.MP9301 STR u + g.MP9401 STR g + r.MP9601 STR r + i.MP9701 STR i + z.MP9801 STR z + Zp STR z + Zprime STR z + Ha.MP7605 STR Ha + Halpha STR Ha + Haalpha.on STR Ha + HaOFF.MP7604 STR HaOff + + CN.MP780 STR CN + cn.MP7803 STR CN + CN.MP7803 STR CN + + TiO.MP77 STR TiO + tio.MP7701 STR TiO + TiO.MP7701 STR TiO + NB920 STR NB920 + + B2F STR B2F + Bj STR Bj + Vj STR Vj + Rj STR Rj + Ij STR Ij + Hb STR Hb + HbOff STR HbOff +END + +# Recipe options +RECIPES METADATA + # Recipes for ppImage + PPIMAGE STR ucam/ppImage.config # Default: all (normal) options on + PPIMAGE_O STR ucam/ppImage_o.config # Overscan only + PPIMAGE_OB STR ucam/ppImage_ob.config # Overscan, bias only + PPIMAGE_OBD STR ucam/ppImage_obd.config # Overscan, bias, dark only + PPIMAGE_OBDF STR ucam/ppImage_obdf.config # Overscan, bias, dark, flat only + PPIMAGE_B STR ucam/ppImage_b.config # Bias only + PPIMAGE_D STR ucam/ppImage_d.config # Dark only + PPIMAGE_F STR ucam/ppImage_f.config # Flat only + PPIMAGE_J STR ucam/ppImage_j.config # JPEG only + + # Recipes for ppMerge + PPMERGE_BIAS STR ucam/ppMerge_bias.config + # Other recipes + PPMERGE STR ppMerge_template.config # ppMerge recipe + PSPHOT STR ucam/psphot.config # psphot details + PSASTRO STR ucam/psastro.config # psastro details + PPSTATS STR ucam/ppStats.config # ppStats recipe +END + +FILERULES METADATA + PPIMAGE.OUTPUT STR PPIMAGE.OUTPUT + PPIMAGE.BIN1 STR PPIMAGE.BIN1.OUTPUT + PPIMAGE.BIN2 STR PPIMAGE.BIN2.OUTPUT + PPIMAGE.JPEG1 STR PPIMAGE.JPEG1.OUTPUT + PPIMAGE.JPEG2 STR PPIMAGE.JPEG2.OUTPUT + + PSASTRO.INPUT STR PSASTRO.INPUT.CMP + PSASTRO.OUTPUT STR PSASTRO.OUTPUT.CMP + PSPHOT.OUTPUT STR PSPHOT.OUTPUT.CMF + + ### input file definitions + TYPE INPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA DATA.LEVEL FILE.TYPE + PPIMAGE.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + PPARITH.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + ### use these entries to get the detrend images from specific files + PPIMAGE.MASK INPUT mask.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.BIAS INPUT bias.fit {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.DARK INPUT dark.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + PPIMAGE.FLAT INPUT flat.fits {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + + ### use these entries to get the detrend images from the database + #PPIMAGE.MASK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.BIAS INPUT @DETDB fpa fpa NONE CHIP IMAGE + #PPIMAGE.DARK INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + #PPIMAGE.FLAT INPUT @DETDB {CHIP.NAME} {CHIP.NAME} NONE CHIP IMAGE + + PSPHOT.INPUT INPUT @FILES {CHIP.NAME} {CELL.NAME} NONE CHIP IMAGE + + PSASTRO.INPUT.CMP INPUT @FILES NONE NONE PHU CHIP CMP + PSASTRO.INPUT.CMF INPUT @FILES NONE SMPDATA PHU CHIP CMF + + ### output file definitions + TYPE OUTPUT FILENAME.RULE FILENAME.XTRA EXTNAME.RULE EXTNAME.XTRA FILE.LEVEL DATA.LEVEL FILE.TYPE FILE.SAVE FILE.FORMAT + PPIMAGE.OUTPUT OUTPUT {OUTPUT}.fit {CHIP.NAME} {CHIP.NAME} NONE FPA CHIP IMAGE TRUE NONE + PPIMAGE.OUTPUT.CHIP OUTPUT {OUTPUT}.chip.fit {CHIP.NAME} {CHIP.NAME} NONE FPA FPA IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA1 OUTPUT {OUTPUT}.fpa1.fit NONE NONE NONE FPA FPA IMAGE TRUE NONE + PPIMAGE.OUTPUT.FPA2 OUTPUT {OUTPUT}.fpa2.fit NONE NONE NONE FPA FPA IMAGE TRUE NONE + + PPIMAGE.BIN1.OUTPUT OUTPUT {OUTPUT}.b1.fit {CHIP.NAME} {CHIP.NAME} NONE CHIP FPA IMAGE TRUE NONE + PPIMAGE.BIN2.OUTPUT OUTPUT {OUTPUT}.b2.fit {CHIP.NAME} {CHIP.NAME} NONE CHIP FPA IMAGE TRUE NONE + PPIMAGE.JPEG1.OUTPUT OUTPUT {OUTPUT}.b1.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + PPIMAGE.JPEG2.OUTPUT OUTPUT {OUTPUT}.b2.jpg NONE NONE NONE FPA FPA JPEG TRUE NONE + + PSPHOT.RESID OUTPUT {OUTPUT}.res.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKGND OUTPUT {OUTPUT}.bck.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKSUB OUTPUT {OUTPUT}.sub.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + PSPHOT.BACKMDL OUTPUT {OUTPUT}.mdl.fits NONE {CELL.NAME} {CELL.NAME} CHIP CHIP IMAGE TRUE RAW + + PSPHOT.OUTPUT.RAW OUTPUT {OUTPUT}.{CHIP.NAME} NONE NONE PHU CHIP CHIP RAW TRUE NONE + PSPHOT.OUTPUT.SX OUTPUT {OUTPUT}.sx NONE NONE PHU CHIP CHIP SX TRUE NONE + PSPHOT.OUTPUT.OBJ OUTPUT {OUTPUT}.obj NONE NONE PHU CHIP CHIP OBJ TRUE NONE + PSPHOT.OUTPUT.CMF OUTPUT {OUTPUT}.cmf NONE SMPDATA PHU CHIP CHIP CMF TRUE NONE + PSPHOT.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.cmp NONE NONE PHU CHIP CHIP CMP TRUE NONE + + PSASTRO.OUTPUT.CMP OUTPUT {OUTPUT}.{CHIP.NAME}.smp NONE NONE PHU CHIP CHIP CMP TRUE NONE + + PPARITH.OUTPUT OUTPUT {OUTPUT}.{CHIP.NAME}.fit {CHIP.NAME} {CHIP.NAME} NONE CHIP CHIP IMAGE TRUE NONE + +END Index: /branches/rel-1-1/ippconfig/ucam/format_raw.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/format_raw.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/format_raw.config (revision 12167) @@ -0,0 +1,145 @@ +### Raw data from microCam + +# How to identify this type +RULE METADATA + ORIGIN STR PS0 +# INSTRUME STR ucam1 + EXTEND BOOL T + NEXTEND S32 64 +END + +# How to read this data +FILE METADATA + PHU STR FPA # The FITS file represents an entire FPA + EXTENSIONS STR CELL # The extensions represent cells + FPA.NAME STR OBSTYPE # A PHU keyword for unique identifier within the hierarchy level +END + +# What's in the FITS file? +CONTENTS METADATA + xy00 STR chip:xy00:otCell + xy10 STR chip:xy10:otCell + xy20 STR chip:xy20:otCell + xy30 STR chip:xy30:otCell + xy40 STR chip:xy40:otCell + xy50 STR chip:xy50:otCell + xy60 STR chip:xy60:otCell + xy70 STR chip:xy70:otCell + xy01 STR chip:xy01:otCell + xy11 STR chip:xy11:otCell + xy21 STR chip:xy21:otCell + xy31 STR chip:xy31:otCell + xy41 STR chip:xy41:otCell + xy51 STR chip:xy51:otCell + xy61 STR chip:xy61:otCell + xy71 STR chip:xy71:otCell + xy02 STR chip:xy02:otCell + xy12 STR chip:xy12:otCell + xy22 STR chip:xy22:otCell + xy32 STR chip:xy32:otCell + xy42 STR chip:xy42:otCell + xy52 STR chip:xy52:otCell + xy62 STR chip:xy62:otCell + xy72 STR chip:xy72:otCell + xy03 STR chip:xy03:otCell + xy13 STR chip:xy13:otCell + xy23 STR chip:xy23:otCell + xy33 STR chip:xy33:otCell + xy43 STR chip:xy43:otCell + xy53 STR chip:xy53:otCell + xy63 STR chip:xy63:otCell + xy73 STR chip:xy73:otCell + xy04 STR chip:xy04:otCell + xy14 STR chip:xy14:otCell + xy24 STR chip:xy24:otCell + xy34 STR chip:xy34:otCell + xy44 STR chip:xy44:otCell + xy54 STR chip:xy54:otCell + xy64 STR chip:xy64:otCell + xy74 STR chip:xy74:otCell + xy05 STR chip:xy05:otCell + xy15 STR chip:xy15:otCell + xy25 STR chip:xy25:otCell + xy35 STR chip:xy35:otCell + xy45 STR chip:xy45:otCell + xy55 STR chip:xy55:otCell + xy65 STR chip:xy65:otCell + xy75 STR chip:xy75:otCell + xy06 STR chip:xy06:otCell + xy16 STR chip:xy16:otCell + xy26 STR chip:xy26:otCell + xy36 STR chip:xy36:otCell + xy46 STR chip:xy46:otCell + xy56 STR chip:xy56:otCell + xy66 STR chip:xy66:otCell + xy76 STR chip:xy76:otCell + xy07 STR chip:xy07:otCell + xy17 STR chip:xy17:otCell + xy27 STR chip:xy27:otCell + xy37 STR chip:xy37:otCell + xy47 STR chip:xy47:otCell + xy57 STR chip:xy57:otCell + xy67 STR chip:xy67:otCell + xy77 STR chip:xy77:otCell +END + +# Specify the cell data +CELLS METADATA + otCell METADATA # Orthogonal transfer cell + CELL.BIASSEC.SOURCE STR HEADER + CELL.TRIMSEC.SOURCE STR HEADER + CELL.BIASSEC STR BIASSEC + CELL.TRIMSEC STR DATASEC + END +END + +# How to translate PS concepts into FITS headers +TRANSLATION METADATA + FPA.AIRMASS STR AIRMASS + FPA.FILTER STR FILTER + FPA.POSANGLE STR ROTANGLE + FPA.RA STR RA + FPA.DEC STR DEC + FPA.RADECSYS STR RADECSYS + CELL.TIME STR DATE-OBS + CELL.EXPOSURE STR EXPTIME + CELL.DARKTIME STR DARKTIME + CELL.XBIN STR CCDBIN1 + CELL.YBIN STR CCDBIN2 + CELL.XPARITY STR IMTM1_1 + CELL.YPARITY STR IMTM2_2 + CELL.X0 STR IMNPIX1 + CELL.Y0 STR IMNPIX2 +END + +# Default PS concepts that may be specified by value +DEFAULTS METADATA + CELL.GAIN F32 1 + CELL.READNOISE F32 10.0 + CELL.SATURATION F32 65535 + CELL.BAD F32 0 + CELL.READDIR S32 1 + CELL.TIMESYS STR UTC + CHIP.X0 S32 0 + CHIP.Y0 S32 0 + CHIP.XPARITY S32 1 + CHIP.YPARITY S32 1 +END + +# How to translation PS concepts into database lookups +DATABASE METADATA + TYPE dbEntry TABLE COLUMN GIVENDBCOL GIVENPS +# A database entry refers to a particular column (COLUMN) in a +# particular table (TABLE), given certain PS concepts (GIVENPS) that +# match certain database columns (GIVENDBCOL). +END + + +# Where there might be some ambiguity, specify the format +FORMATS METADATA + FPA.RA STR HOURS + FPA.DEC STR DEGREES + CELL.TIME STR MJD + CELL.X0 STR FORTRAN + CELL.Y0 STR FORTRAN +END Index: /branches/rel-1-1/ippconfig/ucam/ppImage.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL TRUE # Dark subtraction +FLAT BOOL TRUE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL TRUE # Save chip-mosaic-ed image? +FPA1.FITS BOOL TRUE # Save 1st binned fpa image? +FPA2.FITS BOOL TRUE # Save 2nd binned fpa image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +BIN1.JPEG BOOL TRUE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_b.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_b.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_b.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL FALSE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_d.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_d.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_d.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL FALSE # Overscan subtraction +BIAS BOOL FALSE # Bias subtraction +DARK BOOL TRUE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_f.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_f.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_f.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL FALSE # Overscan subtraction +BIAS BOOL FALSE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL TRUE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL TRUE # Save 1st binned chip image? +BIN2.FITS BOOL TRUE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_j.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_j.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_j.config (revision 12167) @@ -0,0 +1,85 @@ +### Phase 2 recipe configuration file + +### A little bit of a cheat to make a mosaicked binned JPEG from the binned FITS file. +### Set binning to 1, since the input will already be binned. + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0xff # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL FALSE # Overscan subtraction +BIAS BOOL FALSE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL FALSE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL TRUE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 1 +BIN1.YBIN S32 1 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_o.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_o.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_o.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL FALSE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_ob.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_ob.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_ob.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_obd.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_obd.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_obd.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL FALSE # Dark subtraction +FLAT BOOL FALSE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL FALSE # Save 1st binned jpeg? +BIN2.JPEG BOOL FALSE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppImage_obdf.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppImage_obdf.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppImage_obdf.config (revision 12167) @@ -0,0 +1,82 @@ +### Phase 2 recipe configuration file + +# List of tasks to perform +MASK BOOL FALSE # Mask bad pixels +MASK.VALUE U8 0x10 # only mask pixels matching this bitmask +NONLIN BOOL FALSE # Non-linearity correction +OVERSCAN BOOL TRUE # Overscan subtraction +BIAS BOOL TRUE # Bias subtraction +DARK BOOL TRUE # Dark subtraction +FLAT BOOL TRUE # Flat-field normalisation +FRINGE BOOL FALSE # Fringe subtraction +PHOTOM BOOL FALSE # Source identification and photometry +ASTROM.CHIP BOOL FALSE +ASTROM.MOSAIC BOOL FALSE # Astrometry + +BASE.FITS BOOL TRUE # Save base detrended image? +CHIP.FITS BOOL FALSE # Save chip-mosaic-ed image? +FPA1.FITS BOOL FALSE # Save 1st binned fpa image? +FPA2.FITS BOOL FALSE # Save 2nd binned fpa image? +BIN1.FITS BOOL FALSE # Save 1st binned chip image? +BIN2.FITS BOOL FALSE # Save 2nd binned chip image? +BIN1.JPEG BOOL TRUE # Save 1st binned jpeg? +BIN2.JPEG BOOL TRUE # Save 2nd binned jpeg? + +# Non-linearity correction +NONLIN.SOURCE STR CHIP.NAME # How to determine the source +#@NONLIN.DATA F32 0.0 1.001 0.001 # A polynomial +NONLIN.DATA STR nonlin.dat # Filename for lookup table +#NONLIN.DATA METADATA # Source of non-linearity data +# ccd00 STR nonlin00.dat # A lookup table +# @ccd01 F32 0.0 1.001 0.001 # A polynomial +# @ccd02 F32 0.0 1.001 0.001 # A polynomial +# @ccd03 F32 1.2345 # A polynomial +# @ccd04 F32 0.0 1.001 0.001 # A polynomial +# @ccd05 F32 0.0 1.001 0.001 # A polynomial +# @ccd06 F32 0.0 1.001 0.001 # A polynomial +# @ccd07 F32 0.0 1.001 0.001 # A polynomial +# @ccd08 F32 0.0 1.001 0.001 # A polynomial +# @ccd09 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd11 F32 0.0 1.001 0.001 # A polynomial +# @ccd12 F32 0.0 1.001 0.001 # A polynomial +# @ccd13 F32 0.0 1.001 0.001 # A polynomial +# @ccd14 F32 0.0 1.001 0.001 # A polynomial +# @ccd15 F32 0.0 1.001 0.001 # A polynomial +# @ccd16 F32 0.0 1.001 0.001 # A polynomial +# @ccd17 F32 0.0 1.001 0.001 # A polynomial +# @ccd18 F32 0.0 1.001 0.001 # A polynomial +# @ccd19 F32 0.0 1.001 0.001 # A polynomial +# @ccd10 F32 0.0 1.001 0.001 # A polynomial +# @ccd21 F32 0.0 1.001 0.001 # A polynomial +# @ccd22 F32 0.0 1.001 0.001 # A polynomial +# @ccd23 F32 0.0 1.001 0.001 # A polynomial +# @ccd24 F32 0.0 1.001 0.001 # A polynomial +# @ccd25 F32 0.0 1.001 0.001 # A polynomial +# @ccd26 F32 0.0 1.001 0.001 # A polynomial +# @ccd27 F32 0.0 1.001 0.001 # A polynomial +# @ccd28 F32 0.0 1.001 0.001 # A polynomial +# @ccd29 F32 0.0 1.001 0.001 # A polynomial +# @ccd30 F32 0.0 1.001 0.001 # A polynomial +# @ccd31 F32 0.0 1.001 0.001 # A polynomial +# @ccd32 F32 0.0 1.001 0.001 # A polynomial +# @ccd33 F32 0.0 1.001 0.001 # A polynomial +# @ccd34 F32 0.0 1.001 0.001 # A polynomial +# @ccd35 F32 0.0 1.001 0.001 # A polynomial +# @ccd36 F32 0.0 1.001 0.001 # A polynomial +#END + +# Overscan subtraction +OVERSCAN.SINGLE BOOL FALSE # Reduce overscan to a single value? +#OVERSCAN.FIT STR SPLINE # NONE | POLYNOMIAL | SPLINE +OVERSCAN.FIT STR POLYNOMIAL # NONE | POLYNOMIAL | SPLINE +OVERSCAN.ORDER S32 5 # Order of polynomial fit +OVERSCAN.STAT STR MEAN # MEAN | MEDIAN + +# binned output image options +BIN1.XBIN S32 8 +BIN1.YBIN S32 8 +BIN2.XBIN S32 64 +BIN2.YBIN S32 64 + +PHOTCODE.RULE STR {CAMERA}.{FILTER.ID}.{CHIP.N} Index: /branches/rel-1-1/ippconfig/ucam/ppMerge_bias.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppMerge_bias.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppMerge_bias.config (revision 12167) @@ -0,0 +1,14 @@ +# Recipe configuration for ppMerge + +ROWS S32 128 # Number of rows to read at once +ELECTRONS F32 100.0 # Minimum number of electrons for useful signal +SAMPLE S32 100 # Sampling factor for measuring the background +REJ F32 3.0 # Rejection threshold (sigma) +ITER S32 1 # Number of rejection iterations +FRACHIGH F32 0.3 # Fraction of high pixels to reject immediately +FRACLOW F32 0.1 # Fraction of low pixels to reject immediately +NKEEP S32 5 # Minimum number of pixels in stack to keep +MASKVAL S32 0xff # Mask value for input data +### Statistics options: MEAN | MEDIAN | ROBUST | FITTED | CLIPPED +COMBINE STR MEAN # Statistic to use for combination: +BACKGROUND STR MEDIAN # Statistic to use to measure the background Index: /branches/rel-1-1/ippconfig/ucam/ppMerge_dark.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppMerge_dark.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppMerge_dark.config (revision 12167) @@ -0,0 +1,14 @@ +# Recipe configuration for ppMerge + +ROWS S32 128 # Number of rows to read at once +ELECTRONS F32 100.0 # Minimum number of electrons for useful signal +SAMPLE S32 100 # Sampling factor for measuring the background +REJ F32 3.0 # Rejection threshold (sigma) +ITER S32 1 # Number of rejection iterations +FRACHIGH F32 0.3 # Fraction of high pixels to reject immediately +FRACLOW F32 0.1 # Fraction of low pixels to reject immediately +NKEEP S32 5 # Minimum number of pixels in stack to keep +MASKVAL S32 0xff # Mask value for input data +### Statistics options: MEAN | MEDIAN | ROBUST | FITTED | CLIPPED +COMBINE STR MEAN # Statistic to use for combination: +BACKGROUND STR MEDIAN # Statistic to use to measure the background Index: /branches/rel-1-1/ippconfig/ucam/ppMerge_flat.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppMerge_flat.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppMerge_flat.config (revision 12167) @@ -0,0 +1,14 @@ +# Recipe configuration for ppMerge + +ROWS S32 128 # Number of rows to read at once +ELECTRONS F32 100.0 # Minimum number of electrons for useful signal +SAMPLE S32 100 # Sampling factor for measuring the background +REJ F32 3.0 # Rejection threshold (sigma) +ITER S32 1 # Number of rejection iterations +FRACHIGH F32 0.3 # Fraction of high pixels to reject immediately +FRACLOW F32 0.1 # Fraction of low pixels to reject immediately +NKEEP S32 5 # Minimum number of pixels in stack to keep +MASKVAL S32 0xff # Mask value for input data +### Statistics options: MEAN | MEDIAN | ROBUST | FITTED | CLIPPED +COMBINE STR MEAN # Statistic to use for combination: +BACKGROUND STR MEDIAN # Statistic to use to measure the background Index: /branches/rel-1-1/ippconfig/ucam/ppStats.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/ppStats.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/ppStats.config (revision 12167) @@ -0,0 +1,12 @@ +### ppStats recipe +SAMPLE F32 0.1 # Fraction of cell to sample +MASKVAL U8 0xff # Mask value to use for statistics + +# Define the outputs as MULTI +HEADER MULTI +CONCEPT MULTI +STAT MULTI + +# Values to return +STAT STR ROBUST_MEDIAN # Background estimator +STAT STR ROBUST_STDEV # Background standard deviation estimator Index: /branches/rel-1-1/ippconfig/ucam/psastro.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/psastro.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/psastro.config (revision 12167) @@ -0,0 +1,36 @@ + +# astrometry matching parameters + +# nominal plate scale (microns / pixel) +# PSASTRO.PLATE.SCALE F32 13.5 +PSASTRO.PLATE.SCALE F32 1.0 + +# pmAstromGridMatch: +PSASTRO.GRID.MIN.ANGLE F32 -0.0851 +PSASTRO.GRID.MAX.ANGLE F32 +0.0851 +PSASTRO.GRID.DEL.ANGLE F32 0.0170 + +# pmAstromGridAngle +# max grid offset in FP units (microns) +# use plate-scale to make this in pixels? +# PSASTRO.GRID.OFFSET F32 10000. +# PSASTRO.GRID.SCALE F32 500. +PSASTRO.GRID.OFFSET F32 1000. +PSASTRO.GRID.SCALE F32 50 + +# these tweak are in FP units (pixels, currently) +PSASTRO.TWEAK.SCALE F32 1 +PSASTRO.TWEAK.RANGE F32 75 +PSASTRO.TWEAK.SMOOTH F32 2 +PSASTRO.TWEAK.NSIGMA F32 3 + +# pmAstromRadiusMatch +# use plate-scale to make this in pixels? +PSASTRO.MATCH.RADIUS F32 8 + +# pmAstromMatchFit +PSASTRO.CHIP.NX S32 1 # fit order +PSASTRO.CHIP.NY S32 1 # fit order +PSASTRO.CHIP.NITER S32 3 # fit clipping iterations +PSASTRO.CHIP.NSIGMA F32 3 # fit clipping sigmas + Index: /branches/rel-1-1/ippconfig/ucam/psphot.config =================================================================== --- /branches/rel-1-1/ippconfig/ucam/psphot.config (revision 12167) +++ /branches/rel-1-1/ippconfig/ucam/psphot.config (revision 12167) @@ -0,0 +1,84 @@ + +#SAVE.BACKMDL BOOL TRUE +#SAVE.BACKGND BOOL TRUE +#SAVE.BACKSUB BOOL TRUE +#SAVE.RESID BOOL TRUE +#SAVE.PSF BOOL TRUE +#LOAD.PSF BOOL FALSE + +# image noise parameters +RDNOISE STR HD:RDNOISE # read-noise in electrons +GAIN STR HD:GAIN # electrons / DN +ZERO_POINT F32 25.000 # zero point used by DVO + +# background model : +BACKGROUND.XBIN S32 128 +BACKGROUND.YBIN S32 128 + +# masking parameters +XMIN F32 2 # minimum valid x-coord +XMAX F32 -2 # maximum valid x-coord +YMIN F32 2 # minimum valid y-coord +YMAX F32 -2 # maximum valid y-coord +SATURATION F32 50000 # saturation level on this chip +MIN_VALID_PIXEL F32 1 # saturation level on this chip + +# image statistics parameters +IMSTATS_NPIX S32 1000 # number of pixels to use for sky estimate boxes: + +# peak finding +PEAKS_SMOOTH_SIGMA F32 1.0 # smoothing kernel sigma in pixels +PEAKS_SMOOTH_NSIGMA F32 3.0 # smoothing kernel width in sigmas +# PEAKS_NSIGMA_LIMIT F32 10.0 # peak significance threshold +PEAKS_NSIGMA_LIMIT F32 25.0 # peak significance threshold + +# basic object statistics +SKY_INNER_RADIUS F32 15 # square annulus for local sky measurement +SKY_OUTER_RADIUS F32 25 # square annulus for local sky measurement +PSF_MOMENTS_RADIUS F32 3 # calculate initial source moments with this radius +PSF_SN_LIM F32 100 # minimum S/N for stars used for PSF model +PSF_MAX_NSTARS S32 300 # limit number of stars used for PSF model + +# PSF model parameters : choose the PSF model +# list as many PSF_MODEL options as desired +# PSF_MODEL MULTI +PSF_MODEL STR PS_MODEL_QGAUSS +# PSF_MODEL STR PS_MODEL_GAUSS +# PSF_MODEL STR PS_MODEL_PGAUSS +# PSF_MODEL STR PS_MODEL_TGAUSS ## not well tested, not very successful + +MOMENTS_SCALE F32 0.1 +MOMENTS_SN_MIN F32 30.0 +MOMENTS_SX_MAX F32 3.0 +MOMENTS_SY_MAX F32 3.0 +MOMENTS_AR_MAX F32 1.5 # maximum axial ratio: 1 / AR < (sx / sy) < AR + +PSF_FIT_RADIUS F32 15.0 # fitting radius for test PSF model +PSF_REF_RADIUS F32 25.0 # aperture magnitudes are scaled via + +# PSF-like source model parameters +PSF_FIT_NSIGMA F32 1.0 # significance for pixel included in fit +PSF_FIT_PADDING F32 5.0 # extra annulus to use for fit +PSF_SHAPE_NSIGMA F32 3.0 # max significance for shape variation +PSF_MIN_SN F32 2.0 # reject objects below this significance +PSF_MAX_CHI F32 50.0 # reject objects worse that this + +# EXTended source model parameters +EXT_MODEL STR PS_MODEL_PGAUSS +EXT_MIN_SN F32 50.0 # fit galaxies above this S/N limit +EXT_FIT_NSIGMA F32 1 # significance for pixel included in fit +EXT_FIT_PADDING F32 5 # extra annulus to use for fit +EXT_MOMENTS_RADIUS F32 9 + +FITMODE STR BLEND +DEBLEND_PEAK_FRACTION F32 0.1 +DEBLEND_SKY_NSIGMA F32 10.0 + +APTREND STR SKYSAT +FULL_FIT_SN_LIM F32 50.0 +AP_MIN_SN F32 50.0 + +# BREAK_POINT STR PEAKS +# PEAKS_OUTPUT_FILE STR peaks.dat +# MOMENTS_OUTPUT_FILE STR moments.dat +# ANALYSIS_REGION STR [1000:1600,2800:3400] Index: /branches/rel-1-1/pedestal/.cvsignore =================================================================== --- /branches/rel-1-1/pedestal/.cvsignore (revision 12167) +++ /branches/rel-1-1/pedestal/.cvsignore (revision 12167) @@ -0,0 +1,15 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +compile +config.guess +config.log +config.status +config.sub +configure +depcomp +install-sh +ltmain.sh +missing +test Index: /branches/rel-1-1/pedestal/Makefile.am =================================================================== --- /branches/rel-1-1/pedestal/Makefile.am (revision 12167) +++ /branches/rel-1-1/pedestal/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = src + +CLEANFILES = *~ core core.* Index: /branches/rel-1-1/pedestal/autogen.sh =================================================================== --- /branches/rel-1-1/pedestal/autogen.sh (revision 12167) +++ /branches/rel-1-1/pedestal/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ppImage +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOlIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/pedestal/configure.ac =================================================================== --- /branches/rel-1-1/pedestal/configure.ac (revision 12167) +++ /branches/rel-1-1/pedestal/configure.ac (revision 12167) @@ -0,0 +1,28 @@ +AC_PREREQ(2.59) + +AC_INIT([pedestal], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_INSTALL +dnl AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) + +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror -std=c99" + +AC_CONFIG_FILES([ + Makefile + src/Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/pedestal/src/.cvsignore =================================================================== --- /branches/rel-1-1/pedestal/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/pedestal/src/.cvsignore (revision 12167) @@ -0,0 +1,7 @@ +.deps +Makefile +Makefile.in +config.h +config.h.in +pedestal +stamp-h1 Index: /branches/rel-1-1/pedestal/src/Makefile.am =================================================================== --- /branches/rel-1-1/pedestal/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/pedestal/src/Makefile.am (revision 12167) @@ -0,0 +1,14 @@ +bin_PROGRAMS = pedestal + +pedestal_CPPFLAGS = $(PSLIB_CFLAGS) $(pedestal_CFLAGS) +pedestal_LDFLAGS = $(PSLIB_LIBS) +pedestal_SOURCES = \ + pedestal.c + +CLEANFILES = *~ + +clean-local: + -rm -f TAGS +# Tags for emacs +tags: + etags `find . -name \*.[ch] -print` Index: /branches/rel-1-1/pedestal/src/pedestal.c =================================================================== --- /branches/rel-1-1/pedestal/src/pedestal.c (revision 12167) +++ /branches/rel-1-1/pedestal/src/pedestal.c (revision 12167) @@ -0,0 +1,85 @@ +#include +#include +#include + +static bool subtract(psFits *inFile, psFits *outFile, const char *extname, const psMetadata *header) +{ + assert(inFile); + assert(outFile); + assert(extname); + assert(header); + + int naxis = psMetadataLookupS32(NULL, header, "NAXIS"); // NAXIS from the header + if (naxis == 0) { + // No image attached + return psFitsWriteBlank(outFile, header, extname); + } + + if (naxis != 3) { + psWarning("Extension %s has NAXIS == %d --- unable to subtract pedestal.\n", extname, naxis); + return false; + } + + int naxis3 = psMetadataLookupS32(NULL, header, "NAXIS3"); // NAXIS3 from the header + if (naxis3 != 2) { + psWarning("Extension %s has NAXIS3 == %d --- unable to subtract pedestal.\n", extname, naxis3); + return false; + } + + psFitsMoveExtName(inFile, extname); + psArray *cube = psFitsReadImageCube(inFile, psRegionSet(0, 0, 0, 0)); // Image cube + assert(cube->n == 2); // We checked NAXIS3 earlier + + psImage *image = cube->data[0]; // The image data + psImage *pedestal = cube->data[1]; // The pedestal data + + image = (psImage*)psBinaryOp(image, image, "-", pedestal); + + bool status = psFitsWriteImage(outFile, header, image, 0, extname); // Status of write + psFree(cube); + + return status; +} + +int main(int argc, char *argv[]) +{ + if (argc != 3) { + printf("Subtract pedestal from FITS images.\n\n" + "Usage: %s IN.fits OUT.fits\n\n", argv[0]); + exit(argc == 1 ? PS_EXIT_SUCCESS : PS_EXIT_UNKNOWN_ERROR); + } + + const char *inName = argv[1]; // Input file name + psFits *inFile = psFitsOpen(inName, "r"); // Input file + if (!inFile) { + psErrorStackPrint(stderr, "Unable to open input file %s", inName); + exit(PS_EXIT_DATA_ERROR); + } + + const char *outName = argv[2]; // Output file name + psFits *outFile = psFitsOpen(outName, "w"); // Output file + if (!outFile) { + psErrorStackPrint(stderr, "Unable to open output file %s", outName); + exit(PS_EXIT_DATA_ERROR); + } + + psMetadata *headers = psFitsReadHeaderSet(NULL, inFile); // Headers in the input + + psMetadata *phu = psMetadataLookupMetadata(NULL, headers, "PHU"); // The PHU + subtract(inFile, outFile, "PHU", phu); + psMetadataRemoveKey(headers, "PHU"); + + psMetadataIterator *iter = psMetadataIteratorAlloc(headers, PS_LIST_HEAD, NULL); // Iterator for headers + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + assert(item->type == PS_DATA_METADATA); + subtract(inFile, outFile, item->name, item->data.V); + } + psFree(iter); + psFree(headers); + + psFitsClose(inFile); + psFitsClose(outFile); + + return PS_EXIT_SUCCESS; +} Index: /branches/rel-1-1/ppImage/.cvsignore =================================================================== --- /branches/rel-1-1/ppImage/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppImage/.cvsignore (revision 12167) @@ -0,0 +1,16 @@ +bin +aclocal.m4 +autom4te.cache +compile +config.log +config.status +configure +depcomp +install-sh +Makefile.in +missing +Makefile +config.cache +config.guess +config.sub +ltmain.sh Index: /branches/rel-1-1/ppImage/Makefile.am =================================================================== --- /branches/rel-1-1/ppImage/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppImage/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = src + +CLEANFILES = *~ core core.* Index: /branches/rel-1-1/ppImage/autogen.sh =================================================================== --- /branches/rel-1-1/ppImage/autogen.sh (revision 12167) +++ /branches/rel-1-1/ppImage/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ppImage +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOlIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ppImage/configure.ac =================================================================== --- /branches/rel-1-1/ppImage/configure.ac (revision 12167) +++ /branches/rel-1-1/ppImage/configure.ac (revision 12167) @@ -0,0 +1,32 @@ +AC_PREREQ(2.59) + +AC_INIT([ppImage], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_INSTALL +dnl AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) +PKG_CHECK_MODULES([PSMODULE], [psmodules >= 1.0.0]) +PKG_CHECK_MODULES([PSPHOT], [psphot >= 0.8.0]) +PKG_CHECK_MODULES([PSASTRO], [psastro >= 0.8.0]) +PKG_CHECK_MODULES([PPSTATS], [ppStats >= 1.0.0]) + +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror -std=c99" + +AC_CONFIG_FILES([ + Makefile + src/Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/ppImage/src/.cvsignore =================================================================== --- /branches/rel-1-1/ppImage/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppImage/src/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +ppImage +ppTest +Makefile +Makefile.in +.deps +ppFocus +config.h +config.h.in +stamp-h1 Index: /branches/rel-1-1/ppImage/src/Makefile.am =================================================================== --- /branches/rel-1-1/ppImage/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppImage/src/Makefile.am (revision 12167) @@ -0,0 +1,62 @@ +bin_PROGRAMS = ppImage ppFocus + +noinst_PROGRAMS = ppTest + +noinst_HEADERS = \ + ppImage.h \ + ppImageOptions.h \ + ppImageDetrendFringe.h \ + ppImageVersion.h + +ppImage_CPPFLAGS = $(PSLIB_CFLAGS) $(PSMODULE_CFLAGS) $(PSPHOT_CFLAGS) $(PSASTRO_CFLAGS) $(PPSTATS_CFLAGS) $(ppImage_CFLAGS) +ppImage_LDFLAGS = $(PSLIB_LIBS) $(PSMODULE_LIBS) $(PSPHOT_LIBS) $(PPSTATS_LIBS) $(PSASTRO_LIBS) +ppImage_SOURCES = \ + ppImage.c \ + ppImageArguments.c \ + ppImageParseCamera.c \ + ppImageLoop.c \ + ppImageCleanup.c \ + ppImageOptions.c \ + ppImageDetrendReadout.c \ + ppImageDetrendNonLinear.c \ + ppImageDetrendFringe.c \ + ppImageRebinReadout.c \ + ppImageMosaic.c \ + ppImagePhotom.c \ + ppImageAstrom.c \ + ppImageAddstar.c \ + ppImageVersion.c + +ppFocus_CPPFLAGS = $(PSLIB_CFLAGS) $(PSMODULE_CFLAGS) $(PSPHOT_CFLAGS) $(PSASTRO_CFLAGS) $(PPSTATS_CFLAGS) $(ppImage_CFLAGS) +ppFocus_LDFLAGS = $(PSLIB_LIBS) $(PSMODULE_LIBS) $(PSPHOT_LIBS) $(PPSTATS_LIBS) $(PSASTRO_LIBS) +ppFocus_SOURCES = \ + ppFocus.c \ + ppFocusArguments.c \ + ppFocusParseCamera.c \ + ppFocusGetFWHM.c \ + ppFocusFitFWHM.c \ + ppImageLoop.c \ + ppImageCleanup.c \ + ppImageOptions.c \ + ppImageDetrendReadout.c \ + ppImageDetrendNonLinear.c \ + ppImageDetrendFringe.c \ + ppImageRebinReadout.c \ + ppImageMosaic.c \ + ppImagePhotom.c \ + ppImageAstrom.c \ + ppImageAddstar.c \ + ppImageVersion.c + +ppTest_CPPFLAGS = $(PSLIB_CFLAGS) $(PSMODULE_CFLAGS) $(ppImage_CFLAGS) +ppTest_LDFLAGS = $(PSLIB_LIBS) $(PSMODULE_LIBS) +ppTest_SOURCES = \ + ppTest.c + +CLEANFILES = *~ + +clean-local: + -rm -f TAGS +# Tags for emacs +tags: + etags `find . -name \*.[ch] -print` Index: /branches/rel-1-1/ppImage/src/ppFocus.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppFocus.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppFocus.c (revision 12167) @@ -0,0 +1,74 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +int main(int argc, char **argv) { + + psLibInit(NULL); + + psTimerStart(TIMERNAME); + + // Parse the configuration and arguments + // Open the input image(s) + // Determine camera, format from header if not already defined + // Construct camera in preparation for reading + pmConfig *config = ppFocusArguments(argc, argv); + if (config == NULL) { + psErrorStackPrint(stderr, " "); + exit(1); + } + + // we search the argument data for the named fileset (argname) + psArray *infiles = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); + if (!infiles) { + psTrace("pmFPAfile", 5, "Failed to find INPUT in argument list"); + exit(1); + } + + // allocate vectors for analysis + psVector *focus = psVectorAllocEmpty(infiles->n, PS_TYPE_F32); + psVector *fwhm = psVectorAllocEmpty(infiles->n, PS_TYPE_F32); + + for (int i = 0; i < infiles->n; i++) { + + // define recipe options + // define the active I/O files + ppImageOptions *options = ppFocusParseCamera(config, i); + if (options == NULL) { + psErrorStackPrint(stderr, " "); + exit(1); + } + + // Image Arithmetic Loop + // XXX ppFocus REQUIRES photom: for it to be true? + // + if (!ppImageLoop(config, options)) { + psErrorStackPrint(stderr, " "); + exit(1); + } + + // determine FWHM at reference location in image + // (also removes PPIMAGE.INPUT from config->files) + ppFocusGetFWHM (config, focus, fwhm); + + ppFocusDropCamera (config); + psFree (options); + } + + ppFocusFitFWHM (config, focus, fwhm); + + psLogMsg ("ppFocus", 3, "complete ppFocus run: %f sec\n", psTimerMark (TIMERNAME)); + + // Cleaning up + psFree (focus); + psFree (fwhm); + ppImageCleanup(config, NULL); + return EXIT_SUCCESS; +} + +// ppFocus is a lot like ppImage, but with a few important differences: +// - the input list is a set of independent images (not multiple files for a single image) +// - each pass to ppImageLoop performs the analysis on a different pmFPAfile +// - after each ppImageLoop, grap the input pmFPAfile and extract the FWHM stats Index: /branches/rel-1-1/ppImage/src/ppFocusArguments.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppFocusArguments.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppFocusArguments.c (revision 12167) @@ -0,0 +1,75 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +static void usage (void) { + fprintf (stderr, "USAGE: ppFocus [-file focus.*.fits] [-list INPUT.txt] OUTPUT\n"); + exit (2); +} + +pmConfig *ppFocusArguments(int argc, char **argv) { + + int N; + bool status; + + if (argc == 1) usage (); + + // load the site-wide configuration information + pmConfig *config = pmConfigRead(&argc, argv, RECIPE_NAME); + if (config == NULL) { + psErrorStackPrint(stderr, "Can't find site configuration!\n"); + exit(EXIT_FAILURE); + } + + // save the following additional recipe values based on command-line options + // these options override the PPIMAGE recipe values loaded from recipe files + psMetadata *options = pmConfigRecipeOptions (config, RECIPE_NAME); + + // save these recipe options until we have loaded the options + // psMetadata *options = psMetadataAlloc (); + // psMetadataAddPtr (config->arguments, PS_LIST_TAIL, "PPIMAGE.OPTIONS", PS_DATA_METADATA, "", options); + + // the following options override the PPIMAGE recipe options + + // recipe option: -usemask : override MASK setting in phase2.recipe + if ((N = psArgumentGet(argc, argv, "-usemask"))) { + psArgumentRemove (N, &argc, argv); + psMetadataAddBool (options, PS_LIST_TAIL, "MASK", PS_META_REPLACE, "", true); + psArgumentRemove (N, &argc, argv); + } + + // XXX add other PPIMAGE recipe options here + + // drop the local view on the options (saved on config->arguments) + psFree (options); + + // the input file is a required argument; if not found, we will exit + status = pmConfigFileSetsMD (config->arguments, config, "INPUT", "-file", "-list"); + if (!status) { usage ();} + + // if these command-line options are supplied, load the file name lists into config->arguments + // override any configuration-specified source for these files + pmConfigFileSetsMD (config->arguments, config, "BIAS", "-bias", "-biaslist"); + pmConfigFileSetsMD (config->arguments, config, "DARK", "-dark", "-darklist"); + pmConfigFileSetsMD (config->arguments, config, "FLAT", "-flat", "-flatlist"); + pmConfigFileSetsMD (config->arguments, config, "MASK", "-mask", "-masklist"); + pmConfigFileSetsMD (config->arguments, config, "FRINGE", "-fringe", "-fringelist"); + + // chip selection is used to limit chips to be processed + if ((N = psArgumentGet (argc, argv, "-chip"))) { + psArgumentRemove (N, &argc, argv); + psMetadataAddStr (config->arguments, PS_LIST_TAIL, "CHIP_SELECTIONS", PS_DATA_STRING, "", + argv[N]); + psArgumentRemove (N, &argc, argv); + } + + if (argc != 2) usage (); + + // Add the input and output images (which remain on the command-line) to the arguments list + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "OUTPUT", 0, "Name of the output image", + argv[1]); + + return config; +} Index: /branches/rel-1-1/ppImage/src/ppFocusFitFWHM.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppFocusFitFWHM.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppFocusFitFWHM.c (revision 12167) @@ -0,0 +1,30 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +bool ppFocusFitFWHM (pmConfig *config, psVector *focus, psVector *fwhm) { + + float minFocus; + + psPolynomial1D *poly = psPolynomial1DAlloc (PS_POLYNOMIAL_ORD, 2); + + if (!psVectorFitPolynomial1D (poly, NULL, 0, fwhm, NULL, focus)) { + psError (PS_ERR_UNKNOWN, false, "failed to fit focus/fwhm trend; invalid image data?"); + return false; + } + + if (poly->coeff[2] <= 0.0) { + psLogMsg ("ppFocus", 3, "poor focus fit: zero or negative curvature\n"); + psLogMsg ("ppFocus", 3, "fit coeffs: %f %f %f\n", + poly->coeff[0], poly->coeff[1], poly->coeff[2]); + } + + minFocus = -0.5 * poly->coeff[1] / poly->coeff[2]; + psLogMsg ("ppFocus", 3, "best fit focus: %f\n", minFocus); + psLogMsg ("ppFocus", 3, "fwhm @ min: %f\n", psPolynomial1DEval (poly, minFocus)); + + psFree (poly); + return true; +} Index: /branches/rel-1-1/ppImage/src/ppFocusGetFWHM.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppFocusGetFWHM.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppFocusGetFWHM.c (revision 12167) @@ -0,0 +1,79 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +bool ppFocusGetFWHM (pmConfig *config, psVector *focus, psVector *fwhm) { + + bool status; + pmChip *chip; + pmCell *cell; + pmReadout *readout; + psMetadata *header; + float FOCUS, FWHM, FWHM_X, FWHM_Y, FWHMsum; + int FWHMnum; + + pmFPAfile *input = psMetadataLookupPtr (&status, config->files, "PSPHOT.OUTPUT"); + if (!status) { + psErrorStackPrint(stderr, "Can't find input data!\n"); + exit(EXIT_FAILURE); + } + + pmFPAview *view = pmFPAviewAlloc (0); + + // - find readouts with measured PSFs + // - measure the average central FWHM for each PSF + FWHMsum = 0.0; + FWHMnum = 0; + + while ((chip = pmFPAviewNextChip (view, input->fpa, 1)) != NULL) { + psLogMsg ("ppImageLoop", 4, "Chip %d: %x %x\n", view->chip, chip->file_exists, chip->process); + if (!chip->process || !chip->file_exists) { continue; } + + while ((cell = pmFPAviewNextCell (view, input->fpa, 1)) != NULL) { + psLogMsg ("ppImageLoop", 4, "Cell %d: %x %x\n", view->cell, cell->file_exists, cell->process); + if (!cell->process || !cell->file_exists) { continue; } + + // process each of the readouts + while ((readout = pmFPAviewNextReadout (view, input->fpa, 1)) != NULL) { + if (!readout->data_exists) { continue; } + + // get average FWHM + // psphotReadout writes the FWHM values into the PSPHOT.HEADER table + // the source of this value depends on the psphot options. + // - if breakPoint is set to PEAKS, the value will not be defined + // - if breakPoint is set to MOMENTS, the PSFSTAR moments are used + // - in all other cases, the psf model is used + header = psMetadataLookupPtr (&status, readout->analysis, "PSPHOT.HEADER"); + if (header == NULL) { + psError(PS_ERR_IO, false, "Missing header in ppFocus"); + continue; + } + + FWHM_X = psMetadataLookupF32 (&status, header, "FWHM_X"); + FWHM_Y = psMetadataLookupF32 (&status, header, "FWHM_Y"); + + FWHMsum += 0.5*(FWHM_X + FWHM_Y); + FWHMnum ++; + + psLogMsg ("ppFocus", 4, "focus pt: %f,%f, fwhm sum: %f, fwhm num: %d\n", FWHM_X, FWHM_Y, FWHMsum, FWHMnum); + } + } + } + + FWHM = FWHMsum / FWHMnum; + + FOCUS = psMetadataLookupF32 (&status, input->fpa->concepts, "FPA.FOCUS"); + + fwhm->data.F32[fwhm->n] = FWHM; + focus->data.F32[focus->n] = FOCUS; + + psVectorExtend (fwhm, 10, 1); + psVectorExtend (focus, 10, 1); + + psLogMsg ("ppFocus", 4, "focus: %f, fwhm: %f (%d)\n", FOCUS, FWHM, FWHMnum); + + psFree (view); + return true; +} Index: /branches/rel-1-1/ppImage/src/ppFocusParseCamera.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppFocusParseCamera.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppFocusParseCamera.c (revision 12167) @@ -0,0 +1,137 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +// XXX clean up error checks: return NULL, not psAbort +ppImageOptions *ppFocusParseCamera (pmConfig *config, int entry) { + + bool status = false; + + // the first input image defines the camera, and all recipes and options that follow + // select only the first file from the INPUT array + pmFPAfile *input = pmFPAfileDefineSingleFromArgs (&status, config, "PPIMAGE.INPUT", "INPUT", entry); + if (!status) { + psError(PS_ERR_IO, false, "Failed to build FPA from PPIMAGE.INPUT"); + return NULL; + } + + // parse the options from the metadata format to the ppImageOptions structure + ppImageOptions *options = ppImageOptionsParse (config); + + // the following are defined from the argument list, if given, + // otherwise they revert to the config information or detrend database if specified + // not all input or output images are used in a given recipe + if (options->doBias) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.BIAS", "BIAS"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.BIAS"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.BIAS", input->fpa, PM_DETREND_TYPE_BIAS); + if (!status) psAbort("can't find a bias image source"); + } + if (options->doDark) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.DARK", "DARK"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.DARK"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.DARK", input->fpa, PM_DETREND_TYPE_DARK); + if (!status) psAbort("can't find a dark image source"); + } + if (options->doMask) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.MASK", "MASK"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.MASK"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.MASK", input->fpa, PM_DETREND_TYPE_MASK); + if (!status) psAbort("can't find a mask image source"); + } + if (options->doFlat) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.FLAT", "FLAT"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.FLAT"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.FLAT", input->fpa, PM_DETREND_TYPE_FLAT); + if (!status) psAbort("can't find a flat image source"); + } + + // the following files are output targets + pmFPAfile *output = pmFPAfileDefineOutput (config, input->fpa, "PPIMAGE.OUTPUT"); + pmFPAfile *byChip = pmFPAfileDefineNewCamera (config, "PPIMAGE.OUTPUT.CHIP"); + pmFPAfile *byFPA1 = pmFPAfileDefineNewCamera (config, "PPIMAGE.OUTPUT.FPA1"); + pmFPAfile *byFPA2 = pmFPAfileDefineNewCamera (config, "PPIMAGE.OUTPUT.FPA2"); + + // save any of these files? + output->save = options->BaseFITS; + byChip->save = options->ChipFITS; + byFPA1->save = options->FPA1FITS; + byFPA2->save = options->FPA2FITS; + + // output is used as a carrier: input to byChip + output->freeLevel = PM_FPA_LEVEL_CHIP; + + // define the binned target files (which may just be carriers for some camera configurations) + pmFPAfile *bin1 = pmFPAfileDefineFromFPA (config, byChip->fpa, options->xBin1, options->yBin1, "PPIMAGE.BIN1"); + pmFPAfile *bin2 = pmFPAfileDefineFromFPA (config, byChip->fpa, options->xBin2, options->yBin2, "PPIMAGE.BIN2"); + + // bin1 and bin2 are used as carriers: input for byFPA1, byFPA2 + bin1->freeLevel = PM_FPA_LEVEL_FPA; + bin2->freeLevel = PM_FPA_LEVEL_FPA; + + pmFPAfile *jpg1 = pmFPAfileDefineOutput (config, byFPA1->fpa, "PPIMAGE.JPEG1"); + pmFPAfile *jpg2 = pmFPAfileDefineOutput (config, byFPA2->fpa, "PPIMAGE.JPEG2"); + + // XXX we could potentially not define these pmFPAfiles if no output is requested... + bin1->save = options->Bin1FITS; + bin2->save = options->Bin2FITS; + jpg1->save = options->Bin1JPEG; + jpg2->save = options->Bin2JPEG; + + // Chip selection: turn on only the chips specified (pass status to suppress missing-key log msg) + char *chipLine = psMetadataLookupStr(&status, config->arguments, "CHIP_SELECTIONS"); + psArray *chips = psStringSplitArray (chipLine, ",", false); + if (chips->n > 0) { + pmFPASelectChip (input->fpa, -1, true); // deselect all chips + for (int i = 0; i < chips->n; i++) { + int chipNum = atoi(chips->data[i]); + if (! pmFPASelectChip(input->fpa, chipNum, false)) { + psError(PS_ERR_IO, false, "Chip number %d doesn't exist in camera.\n", chipNum); + return false; + } + } + } + psFree (chips); + + return (options); +} + +// remove from config all pmFPAfiles which could have been added (ignore missing entries) +void ppFocusDropCamera (pmConfig *config) { + + psMetadataRemoveKey (config->files, "PPIMAGE.INPUT"); + + psMetadataRemoveKey (config->files, "PPIMAGE.BIAS"); + psMetadataRemoveKey (config->files, "PPIMAGE.DARK"); + psMetadataRemoveKey (config->files, "PPIMAGE.MASK"); + psMetadataRemoveKey (config->files, "PPIMAGE.FLAT"); + + psMetadataRemoveKey (config->files, "PPIMAGE.OUTPUT"); + psMetadataRemoveKey (config->files, "PPIMAGE.OUTPUT.CHIP"); + psMetadataRemoveKey (config->files, "PPIMAGE.OUTPUT.FPA1"); + psMetadataRemoveKey (config->files, "PPIMAGE.OUTPUT.FPA2"); + + psMetadataRemoveKey (config->files, "PPIMAGE.BIN1"); + psMetadataRemoveKey (config->files, "PPIMAGE.BIN2"); + + psMetadataRemoveKey (config->files, "PPIMAGE.JPEG1"); + psMetadataRemoveKey (config->files, "PPIMAGE.JPEG2"); + + psMetadataRemoveKey (config->files, "PSPHOT.INPUT"); + psMetadataRemoveKey (config->files, "PSPHOT.OUTPUT"); + psMetadataRemoveKey (config->files, "PSPHOT.RESID"); + psMetadataRemoveKey (config->files, "PSPHOT.BACKMDL"); + psMetadataRemoveKey (config->files, "PSPHOT.BACKGND"); + psMetadataRemoveKey (config->files, "PSPHOT.BACKSUB"); + psMetadataRemoveKey (config->files, "PSPHOT.PSF.LOAD"); + psMetadataRemoveKey (config->files, "PSPHOT.PSF.SAVE"); + + return; +} + Index: /branches/rel-1-1/ppImage/src/ppImage.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImage.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImage.c (revision 12167) @@ -0,0 +1,90 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +int main(int argc, char **argv) { + + psLibInit(NULL); + + psTimerStart(TIMERNAME); + + // Parse the configuration and arguments + // Open the input image(s) + // Determine camera, format from header if not already defined + // Construct camera in preparation for reading + pmConfig *config = ppImageArguments(argc, argv); + if (config == NULL) { + psErrorStackPrint(stderr, "Unable to parse command-line arguments."); + exit(PS_EXIT_CONFIG_ERROR); + } + + // define recipe options + // define the active I/O files + ppImageOptions *options = ppImageParseCamera(config); + if (options == NULL) { + psErrorStackPrint(stderr, "Unable to parse camera."); + exit(PS_EXIT_CONFIG_ERROR); + } + + // Image Arithmetic Loop + if (!ppImageLoop(config, options)) { + psErrorStackPrint(stderr, "Unable to loop over input"); + exit(PS_EXIT_SYS_ERROR); + } + + psLogMsg ("ppImage", 3, "Complete ppImage run: %f sec\n", psTimerMark(TIMERNAME)); + + // Cleaning up + ppImageCleanup(config, options); + + return PS_EXIT_SUCCESS; +} + +void ppImageFileCheck (pmConfig *config) { + + // add the output names to the output-type files + psMetadataItem *item = NULL; + psMetadataIterator *iter = psMetadataIteratorAlloc (config->files, PS_LIST_HEAD, NULL); + while ((item = psMetadataGetAndIncrement (iter)) != NULL) { + pmFPAfile *file = item->data.V; + pmFPA *fpa = file->fpa; + fprintf (stderr, "file %s\n", file->name); + if (!fpa) { + fprintf (stderr, " has no FPA\n"); + continue; + } + if (fpa->hdu) { + if (fpa->hdu->images) fprintf (stderr, " (%d,%d) images\n", -1, -1); + if (fpa->hdu->weights) fprintf (stderr, " (%d,%d) weights\n", -1, -1); + if (fpa->hdu->masks) fprintf (stderr, " (%d,%d) masks\n", -1, -1); + if (fpa->hdu->header) fprintf (stderr, " (%d,%d) header\n", -1, -1); + continue; + } + fprintf (stderr, " has no fpa data (%d,%d)\n", -1, -1); + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + if (chip->hdu) { + if (chip->hdu->images) fprintf (stderr, " (%d,%d) images\n", i, -1); + if (chip->hdu->weights) fprintf (stderr, " (%d,%d) weights\n", i, -1); + if (chip->hdu->masks) fprintf (stderr, " (%d,%d) masks\n", i, -1); + if (chip->hdu->header) fprintf (stderr, " (%d,%d) header\n", i, -1); + continue; + } + fprintf (stderr, " has no chip data (%d,%d)\n", i, -1); + for (int j = 0; j < chip->cells->n; j++) { + pmCell *cell = chip->cells->data[j]; + if (cell->hdu) { + if (cell->hdu->images) fprintf (stderr, " (%d,%d) images\n", i, j); + if (cell->hdu->weights) fprintf (stderr, " (%d,%d) weights\n", i, j); + if (cell->hdu->masks) fprintf (stderr, " (%d,%d) masks\n", i, j); + if (cell->hdu->header) fprintf (stderr, " (%d,%d) header\n", i, j); + continue; + } + fprintf (stderr, " has no cell data (%d,%d)\n", i, j); + } + } + } + psFree (iter); +} Index: /branches/rel-1-1/ppImage/src/ppImage.h =================================================================== --- /branches/rel-1-1/ppImage/src/ppImage.h (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImage.h (revision 12167) @@ -0,0 +1,60 @@ +#ifndef PP_IMAGE_H +#define PP_IMAGE_H + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "pslib.h" +#include "psmodules.h" +#include "psphot.h" +#include "psastro.h" +#include "ppImageOptions.h" + +#define RECIPE_NAME "PPIMAGE" // Name of the recipe to use +#define TIMERNAME "ppImage" // Name of timer + +// Get the configuration +pmConfig *ppImageArguments(int argc, char **argv); + +// Determine what type of camera, and initialise +ppImageOptions *ppImageParseCamera(pmConfig *config); + +// Loop over the input +bool ppImageLoop(pmConfig *config, ppImageOptions *options); + +// free memory, check for leaks +void ppImageCleanup (pmConfig *config, ppImageOptions *options); + +// perform the detrend analysis on the current readout +bool ppImageDetrendReadout (pmConfig *config, ppImageOptions *options, pmFPAview *view); + +bool ppImageDetrendBias(pmReadout *inputReadout, pmReadout *bias, pmReadout *dark, ppImageOptions *options); +bool ppImageDetrendMask(pmReadout *input, pmReadout *mask); + +bool ppImageDetrendNonLinear(pmReadout *input, ppImageOptions *options); +bool ppImageDetrendNonLinearLookup(pmReadout *input, psMetadataItem *dataItem); +bool ppImageDetrendNonLinearPolynomial(pmReadout *input, psMetadataItem *dataItem); + +bool ppImageRebinChip (pmConfig *config, pmFPAview *view, char *outName, char *inName); +bool ppImageRebinReadout (pmReadout *output, pmReadout *input, pmFPAfile *outFile); + +bool ppImagePhotom (pmConfig *config, pmFPAview *view); +bool ppImageAstrom (pmConfig *config); +bool ppImageAddstar (pmConfig *config); + +bool ppImageMosaicChip (pmConfig *config, const pmFPAview *view, char *outFile, char *inFile); +bool ppImageMosaicFPA (pmConfig *config, char *outFile, char *inFile); + +void ppImageFileCheck (pmConfig *config); + +// functions used by ppFocus +pmConfig *ppFocusArguments(int argc, char **argv); +ppImageOptions *ppFocusParseCamera (pmConfig *config, int entry); +bool ppFocusGetFWHM (pmConfig *config, psVector *focus, psVector *fwhm); +bool ppFocusFitFWHM (pmConfig *config, psVector *focus, psVector *fwhm); + +void ppFocusDropCamera (pmConfig *config); + +#endif Index: /branches/rel-1-1/ppImage/src/ppImageAddstar.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageAddstar.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageAddstar.c (revision 12167) @@ -0,0 +1,120 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +bool setFilename (pmFPAfile *file, pmFPAview *view); +bool addstarFile (char *addstarCommand, char *filename); + +bool ppImageAddstar (pmConfig *config) { + + bool status; + pmChip *chip; + pmCell *cell; + pmReadout *readout; + + // select recipe options supplied on command line + psMetadata *recipe = psMetadataLookupPtr (&status, config->recipes, RECIPE_NAME); + + // find a pmFPAfile PSASTRO.OUTPUT + pmFPAfile *file = psMetadataLookupPtr (&status, config->files, "PSASTRO.OUTPUT"); + if (!status) { + psError (PS_ERR_IO, true, "no PSASTRO.OUTPUT file defined"); + return false; + } + + // find the addstar command: %s is replaced with name of output file + char *addstarCommand = psMetadataLookupStr (&status, recipe, "ADDSTAR.COMMAND"); + + pmFPAview *view = pmFPAviewAlloc (0); + if (file->fileLevel == PM_FPA_LEVEL_CHIP) { + // call addstar on this file + setFilename (file, view); + addstarFile (addstarCommand, file->filename); + return true; + } + + while ((chip = pmFPAviewNextChip (view, file->fpa, 1)) != NULL) { + psLogMsg ("ppImageAddstar", 4, "Chip %d: %x %x\n", view->chip, chip->file_exists, chip->process); + if (!chip->process || !chip->file_exists) { continue; } + + if (file->fileLevel == PM_FPA_LEVEL_CHIP) { + // call addstar on this file + setFilename (file, view); + addstarFile (addstarCommand, file->filename); + continue; + } + + while ((cell = pmFPAviewNextCell (view, file->fpa, 1)) != NULL) { + psLogMsg ("ppImageAddstar", 4, "Cell %d: %x %x\n", view->cell, cell->file_exists, cell->process); + if (! cell->process || ! cell->file_exists) { continue; } + + if (file->fileLevel == PM_FPA_LEVEL_CELL) { + // call addstar on this file + setFilename (file, view); + addstarFile (addstarCommand, file->filename); + continue; + } + + // process each of the readouts + while ((readout = pmFPAviewNextReadout (view, file->fpa, 1)) != NULL) { + if (! readout->data_exists) { continue; } + + if (file->fileLevel == PM_FPA_LEVEL_READOUT) { + // call addstar on this file + setFilename (file, view); + addstarFile (addstarCommand, file->filename); + continue; + } else { + psError (PS_ERR_IO, true, "inconsistent fileLevel for %s: %d\n", file->name, file->fileLevel); + return false; + } + } + } + } + return true; +} + +bool setFilename (pmFPAfile *file, pmFPAview *view) { + + // determine the file name + // free a name allocated earlier + psFree (file->filename); + file->filename = pmFPAfileNameFromRule (file->filerule, file, view); + if (file->filename == NULL) { + psError(PS_ERR_IO, true, "Filename is NULL"); + return false; + } + + // indirect filenames are not allowed for output + if (!strcasecmp (file->filename, "@FILES")) { + psError(PS_ERR_IO, true, "indirect filenames are not allowed for output : %s\n", file->name); + return false; + } + if (!strcasecmp (file->filename, "@DETDB")) { + psError(PS_ERR_IO, true, "detrend db filenames are not allowed for output : %s\n", file->name); + return false; + } + return true; +} + +bool addstarFile (char *addstarCommand, char *filename) { + + bool status; + char *addstarLine = psStringCopy(addstarCommand); + psStringSubstitute(&addstarCommand, filename, "%s"); + + // catch addstar stderr/stdout and do what? + psIOBuffer *buffer = psIOBufferAlloc (512); + psPipe *pipe = psPipeOpen (addstarLine); + status = psIOBufferReadEmpty (buffer, 100, pipe->fd_stdout); + if (!status) { + psError (PS_ERR_IO, false, "detselect is not responding"); + } + psFree (addstarLine); + psFree (buffer); + psPipeClose (pipe); + psFree (pipe); + return status; +} Index: /branches/rel-1-1/ppImage/src/ppImageArguments.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageArguments.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageArguments.c (revision 12167) @@ -0,0 +1,128 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" +#include "ppImageVersion.h" +#include "ppStatsVersion.h" + +static void usage (void) { + fprintf(stderr, "USAGE: ppImage [-file INPUT.fits] [-list INPUT.txt] OUTPUT\n\n"); + fprintf(stderr, "Optional arguments:\n"); + fprintf(stderr, "\t-stat STAT.mdc: Output statistics into STAT.mdc\n"); + fprintf(stderr, "\t-isfringe: The input image contains fringe data.\n"); + fprintf(stderr, "\t-usemask MASKVAL: Use this mask value (override recipe).\n"); + fprintf(stderr, "\t-chip CHIPNUM: Only process this chip number.\n"); + fprintf(stderr, "\t-norm VALUE: Divide through by this value when done.\n"); + fprintf(stderr, "\n"); + fprintf(stderr, "Input options (single file / file list):\n"); + fprintf(stderr, "\t-bias/-biaslist: Bias image.\n"); + fprintf(stderr, "\t-dark/-darklist: Dark image.\n"); + fprintf(stderr, "\t-shutter/-shutterlist: Shutter image.\n"); + fprintf(stderr, "\t-flat/-flatlist: Flat image.\n"); + fprintf(stderr, "\t-mask/-masklist: Mask image.\n"); + fprintf(stderr, "\t-fringe/-fringelist: Fringe image and data.\n"); + fprintf(stderr, "\n"); + exit (2); +} + +pmConfig *ppImageArguments(int argc, char **argv) +{ + int argnum; // Argument number of interest + + if (argc == 1) { + usage(); + } + + if (psArgumentGet (argc, argv, "-version")) { + psString version; + version = ppImageVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + version = ppStatsVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + version = psphotVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + version = psastroVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + version = psModulesVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + version = psLibVersionLong(); fprintf (stdout, "%s\n", version); psFree (version); + exit (0); + } + + // load the site-wide configuration information + pmConfig *config = pmConfigRead(&argc, argv, RECIPE_NAME); + if (config == NULL) { + psErrorStackPrint(stderr, "Can't find site configuration!\n"); + exit(EXIT_FAILURE); + } + + // save the following additional recipe values based on command-line options + // these options override the PPIMAGE recipe values loaded from recipe files + psMetadata *options = pmConfigRecipeOptions (config, RECIPE_NAME); + + // save these recipe options until we have loaded the options + // psMetadata *options = psMetadataAlloc (); + // psMetadataAddPtr (config->arguments, PS_LIST_TAIL, "PPIMAGE.OPTIONS", PS_DATA_METADATA, "", options); + + if ((argnum = psArgumentGet(argc, argv, "-stat"))) { + psArgumentRemove(argnum, &argc, argv); + psMetadataAddStr(options, PS_LIST_TAIL, "STATS", PS_META_REPLACE, + "Filename for summary statistics", argv[argnum]); + psArgumentRemove(argnum, &argc, argv); + } + + if ((argnum = psArgumentGet(argc, argv, "-isfringe"))) { + psArgumentRemove(argnum, &argc, argv); + psMetadataAddBool(options, PS_LIST_TAIL, "INPUT_IS_FRINGE", PS_META_REPLACE, + "Input is fringe image", true); + } + + // the following options override the PPIMAGE recipe options + + // recipe option: -usemask : override MASK setting in phase2.recipe + if ((argnum = psArgumentGet(argc, argv, "-usemask"))) { + psArgumentRemove (argnum, &argc, argv); + psMetadataAddBool (options, PS_LIST_TAIL, "MASK", PS_META_REPLACE, "", true); + psArgumentRemove (argnum, &argc, argv); + } + + // XXX add other PPIMAGE recipe options here + + // drop the local view on the options (saved on config->arguments) + psFree (options); + + // the input file is a required argument; if not found, we will exit + bool status = pmConfigFileSetsMD (config->arguments, config, "INPUT", "-file", "-list"); + if (!status) { + usage (); + } + + // if these command-line options are supplied, load the file name lists into config->arguments + // override any configuration-specified source for these files + pmConfigFileSetsMD (config->arguments, config, "BIAS", "-bias", "-biaslist"); + pmConfigFileSetsMD (config->arguments, config, "DARK", "-dark", "-darklist"); + pmConfigFileSetsMD (config->arguments, config, "SHUTTER", "-shutter", "-shutterlist"); + pmConfigFileSetsMD (config->arguments, config, "FLAT", "-flat", "-flatlist"); + pmConfigFileSetsMD (config->arguments, config, "MASK", "-mask", "-masklist"); + pmConfigFileSetsMD (config->arguments, config, "FRINGE", "-fringe", "-fringelist"); + + // chip selection is used to limit chips to be processed + if ((argnum = psArgumentGet (argc, argv, "-chip"))) { + psArgumentRemove (argnum, &argc, argv); + psMetadataAddStr (config->arguments, PS_LIST_TAIL, "CHIP_SELECTIONS", PS_DATA_STRING, "", + argv[argnum]); + psArgumentRemove (argnum, &argc, argv); + } + + // Optional normalisation factor + if ((argnum = psArgumentGet(argc, argv, "-norm"))) { + psArgumentRemove(argnum, &argc, argv); + float norm = atof(argv[argnum]); + psMetadataAddF32(config->arguments, PS_LIST_TAIL, "NORMALISATION", 0, + "Normalisation to apply", norm); + psArgumentRemove(argnum, &argc, argv); + } + + if (argc != 2) usage (); + + // Add the input and output images (which remain on the command-line) to the arguments list + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "OUTPUT", 0, "Name of the output image", argv[1]); + + return config; +} Index: /branches/rel-1-1/ppImage/src/ppImageAstrom.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageAstrom.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageAstrom.c (revision 12167) @@ -0,0 +1,81 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +// this function is mostly equivalent to the top-level of psastro, with some +// modifications since the data has already been loaded. +bool ppImageAstrom (pmConfig *config) { + + bool status; + + // select recipe options supplied on command line + // XXX move these options to the "PSASTRO" recipe? + psMetadata *recipe = psMetadataLookupPtr (&status, config->recipes, PSASTRO_RECIPE); + + // find or define a pmFPAfile PSPHOT.INPUT + pmFPAfile *input = psMetadataLookupPtr (&status, config->files, "PSASTRO.INPUT"); + if (!status) { + // psphotReadout requires a pmFPAfile supplied with the name PSASTRO.INPUT + // create a pmFPAfile which points at PSPHOT.OUTPUT + // mode is 'REFERENCE' to prevent double frees of the fpa + pmFPAfile *output = psMetadataLookupPtr (&status, config->files, "PSPHOT.OUTPUT"); + input = pmFPAfileDefineInput (config, output->fpa, "PSASTRO.INPUT"); + input->mode = PM_FPA_MODE_REFERENCE; + + pmFPAfileDefineOutput (config, input->fpa, "PSASTRO.OUTPUT"); + } + + // convert the output sources created by psphot into astrometry objects + if (!psastroConvertFPA (input->fpa, recipe)) { + psErrorStackPrint(stderr, "error loading input data\n"); + exit (1); + } + + // interpret the available initial astrometric information + // apply the initial guess + if (!psastroAstromGuess (config)) { + psErrorStackPrint(stderr, "failed to determine initial astrometry guess\n"); + exit (1); + } + + // load the reference stars overlapping the data stars + psArray *refs = psastroLoadRefstars(config); + if (!refs) { + psErrorStackPrint(stderr, "failed to load reference data\n"); + exit (1); + } + + if (!psastroChooseRefstars (config, refs)) { + psErrorStackPrint(stderr, "failed to select reference data for chips\n"); + exit (1); + } + + // XXX does this check the recipe?? + bool chipastro = psMetadataLookupBool (NULL, config->arguments, "PSASTRO.CHIP.MODE"); + bool mosastro = psMetadataLookupBool (NULL, config->arguments, "PSASTRO.MOSAIC.MODE"); + if (!chipastro && !mosastro) { + psLogMsg ("psastro", 3, "no astrometry mode selected, assuming chip mode\n"); + chipastro= true; + } + + if (chipastro) { + if (!psastroChipAstrom (config, refs)) { + psErrorStackPrint(stderr, "failed to perform single chip astrometry\n"); + exit (1); + } + } + if (mosastro) { + if (!psastroMosaicAstrom (config, refs)) { + psErrorStackPrint(stderr, "failed to perform mosaic camera astrometry\n"); + exit (1); + } + } + + // XXX should this be left to the ppImageLoop? + psastroDataSave (config); + + psFree (refs); + return true; +} Index: /branches/rel-1-1/ppImage/src/ppImageCleanup.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageCleanup.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageCleanup.c (revision 12167) @@ -0,0 +1,24 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +void ppImageCleanup (pmConfig *config, ppImageOptions *options) +{ + // Free memory used by ppImage + psFree(options); + psFree(config); + + // Free memory used by psModules + pmConceptsDone(); + pmConfigDone(); + pmModelGroupCleanup(); + + // Free memory used by psLib + psLibFinalize(); + + fprintf (stderr, "Found %d leaks at %s\n", psMemCheckLeaks (0, NULL, stderr, false), "ppImage"); + + return; +} Index: /branches/rel-1-1/ppImage/src/ppImageDetrend.h =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageDetrend.h (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageDetrend.h (revision 12167) @@ -0,0 +1,27 @@ +#ifndef PP_IMAGE_DETREND_H +#define PP_IMAGE_DETREND_H + +#include "pslib.h" +#include "psmodules.h" +#include "ppImageOptions.h" + +// Cells to be used in the detrend +typedef struct { + pmCell *input; // The input cell, to be operated upon + pmCell *mask; // The bad pixel mask + pmCell *bias; // The bias correction + pmCell *dark; // The dark correction + pmCell *flat; // The flat-field correction +} ppImageDetrend; + + +bool ppImageDetrendCell(ppImageDetrend *detrend, ppImageOptions *options, pmConfig *config); +bool ppImageDetrendMask(pmCell *cell, pmReadout *input, pmReadout *mask); +bool ppImageDetrendNonLinear(pmCell *cell, pmReadout *input, ppImageOptions *options); +bool ppImageDetrendNonLinearLookup(pmReadout *input, psMetadataItem *dataItem); +bool ppImageDetrendNonLinearPolynomial(pmReadout *input, psMetadataItem *dataItem); +bool ppImageDetrendBias(pmReadout *inputReadout, pmReadout *bias, pmReadout *dark, ppImageOptions *options); +pmReadout* ppImageDetrendSelectFirst(pmCell *cell, char *name, bool doThis); + + +#endif Index: /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.c (revision 12167) @@ -0,0 +1,222 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "ppImageOptions.h" +#include "ppImageDetrendFringe.h" + +bool ppImageDetrendFringeMeasure(pmReadout *readout, pmCell *fringe, const ppImageOptions *options) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(fringe, false); + PS_ASSERT_PTR_NON_NULL(options, false); + + // Reference fringe measurements + psArray *references = psMemIncrRefCounter(psMetadataLookupPtr(NULL, fringe->analysis, + "FRINGE.MEASUREMENTS")); + if (!references) { + references = pmFringesParse(fringe); // Reference fringes + if (!references) { + psError(PS_ERR_IO, false, "Unable to find fringe references.\n"); + return false; + } + psMetadataAdd(fringe->analysis, PS_LIST_TAIL, "FRINGE.MEASUREMENTS", PS_DATA_UNKNOWN, + "Fringe measurements", references); + } + + pmFringeStats *reference = references->data[0]; // Take the first as representative + pmFringeRegions *regions = reference->regions; // Regions to measure + pmFringeStats *measurements = pmFringeStatsMeasure(regions, readout, options->maskValue); // Fringe stats + + // Normalise measurements by the exposure time + bool mdok; // Status of MD lookup + float expTime = psMetadataLookupF32(&mdok, readout->parent->concepts, "CELL.EXPOSURE"); // Exp. time + if (!mdok || !isfinite(expTime)) { + psError(PS_ERR_UNKNOWN, false, "CELL.EXPOSURE is not set for --- can't normalise fringes\n"); + psFree(measurements); + return false; + } + if (expTime == 0) { + psWarning("Exposure time is zero --- are you sure you want fringe subtraction?\n"); + expTime = 1.0; + } + psBinaryOp(measurements->f, measurements->f, "*", psScalarAlloc(1.0 / expTime, PS_TYPE_F32)); + psBinaryOp(measurements->df, measurements->df, "*", psScalarAlloc(1.0 / expTime, PS_TYPE_F32)); + + // Science fringe measurements + pmFringeStats *previous = psMetadataLookupPtr(NULL, readout->parent->analysis, "FRINGE.MEASUREMENTS"); + if (previous) { + // Multiple readouts: concatenate + psArray *concatenate = psArrayAlloc(2); // Array to hold fringes + + // Concatenate science measurements + concatenate->data[0] = previous; + concatenate->data[1] = measurements; + pmFringeStats *new = pmFringeStatsConcatenate(concatenate, NULL, NULL); // New measurements + psFree(measurements); + measurements = new; + + // Concatenate reference measurements (duplication, so the science and reference line up) + for (int i = 0; i < references->n; i++) { + concatenate->data[0] = concatenate->data[1] = references->data[i]; + pmFringeStats *refNew = pmFringeStatsConcatenate(concatenate, NULL, NULL); + psFree(references->data[i]); + references->data[i] = refNew; + } + concatenate->data[0] = concatenate->data[1] = NULL; + psFree(concatenate); + } + + psMetadataAdd(readout->parent->analysis, PS_LIST_TAIL, "FRINGE.MEASUREMENTS", + PS_DATA_UNKNOWN | PS_META_REPLACE, "Fringe measurements", measurements); + psFree(measurements); + + psFree(references); + + return true; +} + + +// Pull the fringes out of the cell analysis FRINGE.MEASUREMENTS for a chip +static psArray *getFringes(const pmChip *chip // Chip of interest + ) +{ + psArray *cells = chip->cells; // Component cells + psArray *fringes = psArrayAlloc(cells->n); // Fringes, to return + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + fringes->data[i] = psMemIncrRefCounter(psMetadataLookupPtr(NULL, cell->analysis, + "FRINGE.MEASUREMENTS")); + } + + return fringes; +} + + +// Solve the fringe system: we have science fringe measurements for each cell, and an array of reference +// fringe measurements for each cell. Need to concatenate these together first, and then solve. +bool ppImageDetrendFringeSolve(pmChip *scienceChip, const pmChip *refChip, const ppImageOptions *options) +{ + PS_ASSERT_PTR_NON_NULL(scienceChip, NULL); + PS_ASSERT_PTR_NON_NULL(refChip, NULL); + PS_ASSERT_PTR_NON_NULL(options, NULL); + + psArray *science = getFringes(scienceChip); // Fringe measurements on science chip + pmFringeStats *scienceCat = pmFringeStatsConcatenate(science, NULL, NULL); // Science fringes + psFree(science); + + // Need to transform the array of cells each with an array of fringes --> array of fringes for the chip as + // a whole + psArray *references = getFringes(refChip); // Fringe measurements on reference chip + int numRefs = ((psArray*)references->data[0])->n; // Number of reference fringes + psArray *referencesCat = psArrayAlloc(numRefs); // Reference fringes + for (int i = 0; i < numRefs; i++) { // Iterate over fringes + psArray *refs = psArrayAlloc(references->n); // Array of fringes for each cell + for (int j = 0; j < references->n; j++) { // Iterate over cells + psArray *ref = references->data[j]; // Array of references for this cell + refs->data[j] = psMemIncrRefCounter(ref->data[i]); + } + referencesCat->data[i] = pmFringeStatsConcatenate(refs, NULL, NULL); + psFree(refs); + } + psFree(references); + + // Now we can solve + psTrace("ppImage", 3, "Solving fringe system...\n"); + pmFringeScale *solution = pmFringeScaleMeasure(scienceCat, referencesCat, options->fringeRej, + options->fringeIter, options->fringeKeep); + + psMetadataAdd(scienceChip->analysis, PS_LIST_TAIL, "FRINGE.SOLUTION", PS_DATA_UNKNOWN, + "Fringe solution", solution); + psFree(solution); + psFree(scienceCat); + psFree(referencesCat); + + return true; +} + + +bool ppImageDetrendFringeGenerate(pmCell *science, pmCell *fringes) +{ + PS_ASSERT_PTR_NON_NULL(science, false); + PS_ASSERT_PTR_NON_NULL(fringes, false); + + pmFringeScale *solution = psMetadataLookupPtr(NULL, science->parent->analysis, "FRINGE.SOLUTION"); + if (!solution) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find fringe solution.\n"); + return false; + } + assert(fringes->readouts->n == solution->nFringeFrames); + + bool mdok; // Status of MD lookup + float expTime = psMetadataLookupF32(&mdok, science->concepts, "CELL.EXPOSURE"); // Exp. time + if (!mdok || !isfinite(expTime)) { + psError(PS_ERR_UNKNOWN, true, "CELL.EXPOSURE is not set --- can't renormalise fringes\n"); + return false; + } + if (expTime == 0) { + psWarning("Exposure time is zero --- are you sure you want fringe subtraction?\n"); + expTime = 1.0; + } + + pmHDU *hdu = pmHDUFromCell(science);// HDU of interest + + // Construct the fringe image from the scale + psTrace("ppImage", 3, "Generating fringe correction...\n"); + psImage *sumFringe = NULL; // Sum of the fringes + for (int i = 0; i < solution->nFringeFrames; i++) { + pmReadout *fringeRO = fringes->readouts->data[i]; // Fringe readout + psImage *fringe = fringeRO->image; // Fringe image + psTrace("ppImage", 5, "Scale for fringe component %d is %f\n", + i, solution->coeff->data.F32[i + 1]); + psBinaryOp(fringe, fringe, "*", psScalarAlloc(solution->coeff->data.F32[i + 1], PS_TYPE_F32)); + if (!sumFringe) { + sumFringe = psImageCopy(NULL, fringe, PS_TYPE_F32); + } else { + psBinaryOp(sumFringe, sumFringe, "+", fringe); + } + + psVector *md5 = psImageMD5(fringe); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "Fringe image %d (scale %.3f) MD5: ", + i, solution->coeff->data.F32[i + 1]); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + md5string, ""); + psFree(md5string); + } + if (expTime != 1.0) { + psBinaryOp(sumFringe, sumFringe, "*", psScalarAlloc(expTime, PS_TYPE_F32)); + } + + // Apply the correction to all readouts + psArray *readouts = science->readouts; // Array of science readouts + for (int i = 0; i < readouts->n; i++) { + pmReadout *readout = readouts->data[i]; // Readout of interest + if (!readout || !readout->data_exists) { + continue; + } + + // XXX: Make generic, so subregions may be subtracted as well + if (!psBinaryOp(readout->image, readout->image, "-", sumFringe)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to subtract fringe.\n"); + return false; + } + } + psFree(sumFringe); + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now, used for reporting + psString timeString = psTimeToISO(time); // String with time + psFree(time); + psStringPrepend(&timeString, "Fringe correction completed at "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + timeString, ""); + psFree(timeString); + + return sumFringe; +} + Index: /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.h =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.h (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageDetrendFringe.h (revision 12167) @@ -0,0 +1,26 @@ +#ifndef PP_IMAGE_DETREND_FRINGE_H +#define PP_IMAGE_DETREND_FRINGE_H + +#include +#include +#include "ppImageOptions.h" + +// Measure fringes +bool ppImageDetrendFringeMeasure(pmReadout *readout, // Readout to measure + pmCell *fringe, // Fringe cell (each readout is a different component) + const ppImageOptions *options // Options + ); + +// Solve the fringe system +bool ppImageDetrendFringeSolve(pmChip *scienceChip, // Chip with science + const pmChip *refChip, // Chip with reference fringes + const ppImageOptions *options // Options + ); + +// Generate fringe frame +bool ppImageDetrendFringeGenerate(pmCell *science, // Science cell + pmCell *fringes // Fringe cell, one readout per fringe component + ); + + +#endif Index: /branches/rel-1-1/ppImage/src/ppImageDetrendNonLinear.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageDetrendNonLinear.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageDetrendNonLinear.c (revision 12167) @@ -0,0 +1,114 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +bool ppImageDetrendNonLinearPolynomial(pmReadout *input, psMetadataItem *dataItem) { + + // These are the polynomial coefficients + psVector *coeff = dataItem->data.V; // The coefficient vector + if (coeff->type.type != PS_TYPE_F64) { + psVector *temp = psVectorCopy(NULL, coeff, PS_TYPE_F64); // F64 version + psFree (coeff); + coeff = temp; + } + psPolynomial1D *correction = psPolynomial1DAlloc(coeff->n - 1, PS_POLYNOMIAL_ORD); + psFree(correction->coeff); + correction->coeff = psMemIncrRefCounter(coeff->data.F64); + pmNonLinearityPolynomial(input, correction); + psFree(coeff); + psFree(correction); + return true; +} + +bool ppImageDetrendNonLinearLookup(pmReadout *input, psMetadataItem *dataItem) { + + // This is a filename: lookup table + char *name = dataItem->data.V; // Filename + psLookupTable *table = psLookupTableAlloc(name, "%f %f", 0); + if (psLookupTableRead(table) <= 0) { + psErrorStackPrint(stderr, "Unable to read non-linearity correction file " + "%s --- ignored\n", name); + return false; + } +#ifdef PRODUCTION + pmNonLinearityLookup(input, table); +#else + psVector *influx = table->values->data[0]; + psVector *outflux = table->values->data[1]; + pmNonLinearityLookup(input, influx, outflux); +#endif + psFree(table); + return true; +} + +bool ppImageDetrendNonLinear(pmReadout *input, ppImageOptions *options) { + + psMetadataItem *concept; + pmCell *cell = input->parent; + + switch (options->nonLinearType) { + case PS_DATA_VECTOR: + ppImageDetrendNonLinearPolynomial (input, options->nonLinearData); + return true; + + case PS_DATA_STRING: + ppImageDetrendNonLinearLookup (input, options->nonLinearData); + return true; + + case PS_DATA_METADATA: + // XXX EAM: this is somewhat confusing : let's wrap in a function when i understand it + + // Go looking for the value in the hierarchy + concept = psMetadataLookup(cell->concepts, options->nonLinearSource); + if (! concept) { + pmChip *chip = cell->parent;// Parent chip + concept = psMetadataLookup(chip->concepts, options->nonLinearSource); + if (! concept) { + pmFPA *fpa = chip->parent; // Parent FPA + concept = psMetadataLookup(fpa->concepts, options->nonLinearSource); + if (! concept) { + psLogMsg("phase2", PS_LOG_WARN, "Unable to find value of concept %s " + "for non-linearity correction --- ignored.\n", (char *)options->nonLinearSource); + return false; + } + } + } + + if (concept->type != PS_DATA_STRING) { + psLogMsg("phase2", PS_LOG_WARN, "Type for concept %p isn't STRING, as" + " expected for non-linearity correction --- ignored.\n", + concept); + return false; + } + + // Get the value of the concept + psString conceptValue = concept->data.V; + psMetadata *folder = (psMetadata *)options->nonLinearData->data.V; + psMetadataItem *optionItem = psMetadataLookup(folder, conceptValue); + if (!optionItem) { + psLogMsg("phase2", PS_LOG_WARN, "Unable to find %s in NONLIN.DATA" + " --- ignored.\n", conceptValue); + return false; + } + + switch (optionItem->type) { + case PS_DATA_VECTOR: + ppImageDetrendNonLinearPolynomial (input, optionItem); + return true; + case PS_DATA_STRING: + ppImageDetrendNonLinearLookup (input, optionItem); + return true; + default: + psLogMsg("phase2", PS_LOG_WARN, "Non-linearity correction " + "desired but unable to interpret NONLIN.DATA for %s" + " --- ignored\n", conceptValue); + return false; + } + default: + psAbort("Invalid options->nonLinearType"); + } + return true; +} + Index: /branches/rel-1-1/ppImage/src/ppImageDetrendReadout.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageDetrendReadout.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageDetrendReadout.c (revision 12167) @@ -0,0 +1,93 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" +#include "ppImageDetrendFringe.h" + +bool ppImageDetrendReadout(pmConfig *config, ppImageOptions *options, pmFPAview *view) +{ + // construct a view for the detrend images (which have only one readout) + pmFPAview *detview = pmFPAviewAlloc(0); + *detview = *view; + detview->readout = 0; + + // find the currently selected readout + pmReadout *input = pmFPAfileThisReadout(config->files, view, "PPIMAGE.INPUT"); + +# if 0 + // Non-linearity correction + if (options->doNonLin) { + ppImageDetrendNonLinear(detrend->input, input, options); + } +# endif + + // set up the readouts for dark and bias + pmReadout *dark = NULL; + pmReadout *bias = NULL; + if (options->doBias) { + bias = pmFPAfileThisReadout(config->files, detview, "PPIMAGE.BIAS"); + } + if (options->doDark) { + dark = pmFPAfileThisReadout(config->files, detview, "PPIMAGE.DARK"); + } + + // Bias, dark and overscan subtraction are all merged. + if (options->doBias || options->doDark || options->doOverscan) { + if (!pmBiasSubtract(input, options->overscan, bias, dark)) { + psError(PS_ERR_UNKNOWN, false, "Unable to subtract bias.\n"); + return false; + } + } + + if (options->doMask || options->doShutter || options->doFlat || options->doPhotom) { + // create the target mask and weight images + pmReadoutGenerateMaskWeight(input, true); + } + + // apply the externally supplied mask to the input->mask pixels + if (options->doMask) { + pmReadout *mask = pmFPAfileThisReadout(config->files, detview, "PPIMAGE.MASK"); + pmMaskBadPixels(input, mask, options->maskValue); + } + + // Shutter correction + if (options->doShutter) { + pmReadout *shutter = pmFPAfileThisReadout(config->files, detview, "PPIMAGE.SHUTTER"); + if (!pmShutterCorrectionApply(input, shutter)) { + return false; + } + } + + // Flat-field correction (no options used?) + if (options->doFlat) { + pmReadoutGenerateMaskWeight(input, true); + pmReadout *flat = pmFPAfileThisReadout(config->files, detview, "PPIMAGE.FLAT"); + if (!pmFlatField(input, flat)) { + return false; + } + } + + // Normalisation by a (known) constant + bool mdok; // Status of MD lookup + float norm = psMetadataLookupF32(&mdok, config->arguments, "NORMALISATION"); + if (mdok && isfinite(norm) && norm != 1.0) { + pmHDU *hdu = pmHDUFromReadout(input); // HDU of interest + psString comment = NULL; // Comment to add + psStringAppend(&comment, "Normalisation: %f", norm); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + + psBinaryOp(input->image, input->image, "*", psScalarAlloc(norm, PS_TYPE_F32)); + } + + if (options->doFringe) { + pmCell *fringe = pmFPAfileThisCell(config->files, detview, "PPIMAGE.FRINGE"); + if (!ppImageDetrendFringeMeasure(input, fringe, options)) { + return false; + } + } + + psFree(detview); + return true; +} Index: /branches/rel-1-1/ppImage/src/ppImageErrorCodes.c.in =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageErrorCodes.c.in (revision 12167) @@ -0,0 +1,26 @@ +/* + * The line + { PPIMAGE_ERR_$X{ErrorCode}, "$X{ErrorDescription}"}, + * (without the Xs) + * will be replaced by values from errorCodes.dat + */ +#include "pslib.h" +#include "ppImageErrorCodes.h" + +void ppImageErrorRegister(void) +{ + static psErrorDescription errors[] = { + { PPIMAGE_ERR_BASE, "First value we use; lower values belong to psLib" }, + { PPIMAGE_ERR_${ErrorCode}, "${ErrorDescription}"}, + }; + static int nerror = PPIMAGE_ERR_NERROR - PPIMAGE_ERR_BASE; // number of values in enum + + for (int i = 0; i < nerror; i++) { + psErrorDescription *tmp = psAlloc(sizeof(psErrorDescription)); + p_psMemSetPersistent(tmp, true); + *tmp = errors[i]; + psErrorRegister(tmp, 1); + psFree(tmp); /* it's on the internal list */ + } + nerror = 0; // don't register more than once +} Index: /branches/rel-1-1/ppImage/src/ppImageErrorCodes.dat =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageErrorCodes.dat (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageErrorCodes.dat (revision 12167) @@ -0,0 +1,10 @@ +# +# This file is used to generate ppImageErrorClasses.h +# +BASE = 500 First value we use; lower values belong to psLib +# these errors correspond to standard exit conditions +ARGUMENTS Incorrect arguments +SYS System error +CONFIG Problem in configure files +PROG Programming error +DATA invalid data Index: /branches/rel-1-1/ppImage/src/ppImageErrorCodes.h.in =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageErrorCodes.h.in (revision 12167) @@ -0,0 +1,18 @@ +#if !defined(PPIMAGE_ERROR_CODES_H) +#define PPIMAGE_ERROR_CODES_H +/* + * The line + * PPIMAGE_ERR_$X{ErrorCode}, + * (without the X) + * + * will be replaced by values from errorCodes.dat + */ +typedef enum { + PPIMAGE_ERR_BASE = 512, + PPIMAGE_ERR_${ErrorCode}, + PPIMAGE_ERR_NERROR +} ppImageErrorCode; + +void ppImageErrorRegister(void); + +#endif Index: /branches/rel-1-1/ppImage/src/ppImageLoop.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageLoop.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageLoop.c (revision 12167) @@ -0,0 +1,223 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "ppImage.h" +#include "ppImageDetrendFringe.h" +#include "ppImageVersion.h" + +bool ppImageLoop (pmConfig *config, ppImageOptions *options) { + + bool status; + pmChip *chip; + pmCell *cell; + pmReadout *readout; + + bool mdok; // Status of MD lookup + psMetadata *recipe = psMetadataLookupMetadata(&mdok, config->recipes, RECIPE_NAME); + const char *statsName = psMetadataLookupStr(&mdok, recipe, "STATS"); // Filename for statistics + psMetadata *stats = NULL; // Container for statistics + FILE *statsFile = NULL; // File stream for statistics + if (mdok && statsName && strlen(statsName) > 0) { + statsFile = fopen(statsName, "w"); + if (!statsFile) { + psError(PS_ERR_IO, true, "Unable to open statistics file %s for writing.\n", statsName); + } else { + stats = psMetadataAlloc(); + } + } + + pmFPAfile *input = psMetadataLookupPtr(&status, config->files, "PPIMAGE.INPUT"); + if (!status) { + psErrorStackPrint(stderr, "Can't find input data!\n"); + exit(EXIT_FAILURE); + } + + pmFPAview *view = pmFPAviewAlloc(0);// View for level of interest + pmHDU *lastHDU = NULL; // Last HDU that was updated + + // files associated with the science image + if (!pmFPAfileIOChecks(config, view, PM_FPA_BEFORE)) { + return false; + } + + while ((chip = pmFPAviewNextChip(view, input->fpa, 1)) != NULL) { + psLogMsg ("ppImageLoop", 4, "Chip %d: %x %x\n", view->chip, chip->file_exists, chip->process); + if (!chip->process || !chip->file_exists) { + continue; + } + + if (!pmFPAfileIOChecks(config, view, PM_FPA_BEFORE)) { + return false; + } + + while ((cell = pmFPAviewNextCell(view, input->fpa, 1)) != NULL) { + psLogMsg ("ppImageLoop", 4, "Cell %d: %x %x\n", view->cell, cell->file_exists, cell->process); + if (!cell->process || !cell->file_exists) { + continue; + } + if (!pmFPAfileIOChecks(config, view, PM_FPA_BEFORE)) { + return false; + } + + // Put version information into the header + pmHDU *hdu = pmHDUFromCell(cell); + if (hdu && hdu != lastHDU) { + ppImageVersionMetadata(hdu->header); + lastHDU = hdu; + } + + + // process each of the readouts + while ((readout = pmFPAviewNextReadout (view, input->fpa, 1)) != NULL) { + if (!pmFPAfileIOChecks(config, view, PM_FPA_BEFORE)) { + return false; + } + if (!readout->data_exists) { + continue; + } + + // perform the detrend analysis + if (!ppImageDetrendReadout(config, options, view)) { + psError(PS_ERR_UNKNOWN, false, "Unable to detrend readout.\n"); + return false; + } + + } + } + + // Solve the fringe system + if (options->doFringe) { + pmChip *fringe = pmFPAfileThisChip(config->files, view, "PPIMAGE.FRINGE"); + if (!ppImageDetrendFringeSolve(chip, fringe, options)) { + return false; + } + } + + // Go back over the cells to apply the fringe and do statistics + view->cell = view->readout = -1; + while ((cell = pmFPAviewNextCell(view, input->fpa, 1)) != NULL) { + if (!cell->process || !cell->file_exists) { + continue; + } + + // Apply the fringe correction + if (options->doFringe) { + psTrace("ppImage", 3, "Applying fringe correction...\n"); + pmCell *fringeCell = pmFPAfileThisCell(config->files, view, "PPIMAGE.FRINGE"); + if (!ppImageDetrendFringeGenerate(cell, fringeCell)) { + return false; + } + } + + // Perform statistics on the detrended cell + if (stats) { + bool mdok; // Status of MD lookup + pmFPAfile *output = psMetadataLookupPtr(&mdok, config->files, "PPIMAGE.OUTPUT"); + if (!mdok || !output) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find file PPIMAGE.OUTPUT.\n"); + return false; + } + ppStats(stats, output->fpa, view, config); + } + + // Add MD5 information for cell + pmHDU *hdu = pmHDUFromCell(cell); // HDU that owns the cell + while ((readout = pmFPAviewNextReadout(view, input->fpa, 1)) != NULL) { + const char *chipName = psMetadataLookupStr(NULL, chip->concepts, "CHIP.NAME"); + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); + + psString headerName = NULL; // Header name for MD5 + psStringAppend(&headerName, "MD5_%s_%s_%d", chipName, cellName, view->readout); + + psVector *md5 = psImageMD5(readout->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, headerName, PS_META_REPLACE, + "Image MD5", md5string); + psFree(md5string); + psFree(headerName); + } + +#if 0 + if (!pmFPAfileIOChecks(config, view, PM_FPA_AFTER)) { + return false; + } +#endif + + } + + if (!ppImageMosaicChip(config, view, "PPIMAGE.OUTPUT.CHIP", "PPIMAGE.OUTPUT")) { + psError(PS_ERR_UNKNOWN, false, "Unable to mosaic chip.\n"); + return false; + } + if (!ppImageRebinChip(config, view, "PPIMAGE.BIN1", "PPIMAGE.OUTPUT.CHIP")) { + psError(PS_ERR_UNKNOWN, false, "Unable to bin chip.\n"); + return false; + } + if (!ppImageRebinChip(config, view, "PPIMAGE.BIN2", "PPIMAGE.OUTPUT.CHIP")) { + psError(PS_ERR_UNKNOWN, false, "Unable to bin chip.\n"); + return false; + } + + // we perform photometry on the readouts of this chip in the output + if (options->doPhotom) { + ppImagePhotom(config, view); + } + + // Close cells + view->cell = -1; + while ((cell = pmFPAviewNextCell(view, input->fpa, 1)) != NULL) { + if (!cell->process || !cell->file_exists) { + continue; + } + + if (!pmFPAfileIOChecks(config, view, PM_FPA_AFTER)) { + return false; + } + } + + // Close chip + if (!pmFPAfileIOChecks(config, view, PM_FPA_AFTER)) { + return false; + } + } + + // Write out summary statistics + if (stats) { + const char *statsMDC = psMetadataConfigFormat(stats); + if (!statsMDC || strlen(statsMDC) == 0) { + psError(PS_ERR_IO, false, "Unable to get statistics MDC file.\n"); + } else { + fprintf(statsFile, "%s", statsMDC); + } + psFree((void *)statsMDC); + fclose(statsFile); + + psFree(stats); + } + + // XXX an optional full-scale FPA mosaic could happen here + // it would require us to NOT free PPIMAGE.OUTPUT.CHIP until here + // ppImageMosaicFPA (config, "PPIMAGE.OUTPUT.FPA", "PPIMAGE.OUTPUT.CHIP"); + ppImageMosaicFPA(config, "PPIMAGE.OUTPUT.FPA1", "PPIMAGE.BIN1"); + ppImageMosaicFPA(config, "PPIMAGE.OUTPUT.FPA2", "PPIMAGE.BIN2"); + + // we perform astrometry on all chips after sources have been detected + if (options->doAstromChip || options->doAstromMosaic) { + ppImageAstrom(config); + } + // XXX should we keep the addstar command as an option, or just run it externally? + if (options->doAddstar) { + ppImageAddstar(config); + } + + if (!pmFPAfileIOChecks(config, view, PM_FPA_AFTER)) { + return false; + } + + psFree(view); + + return true; +} Index: /branches/rel-1-1/ppImage/src/ppImageMosaic.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageMosaic.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageMosaic.c (revision 12167) @@ -0,0 +1,71 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +bool ppImageMosaicChip(pmConfig *config, const pmFPAview *view, char *outFile, char *inFile) +{ + bool status; // Status of MD lookup + + pmFPAfile *in = psMetadataLookupPtr(&status, config->files, inFile); // Input file + if (!status) { + psErrorStackPrint(stderr, "Can't find required I/O file!\n"); + exit(EXIT_FAILURE); + } + + pmFPAfile *out = psMetadataLookupPtr(&status, config->files, outFile); // Output file + if (!status) { + psErrorStackPrint(stderr, "Can't find required I/O file!\n"); + exit(EXIT_FAILURE); + } + + pmChip *outChip = pmFPAviewThisChip(view, out->fpa); + pmChip *inChip = pmFPAviewThisChip(view, in->fpa); + if (!outChip->hdu && !outChip->parent->hdu) { + const char *name = psMetadataLookupStr(&status, in->fpa->concepts, "FPA.NAME"); // Name of FPA + pmFPAAddSourceFromView(out->fpa, name, view, out->format); + } + + psTrace("pmChipMosaic", 5, "mosaic chip %s to %s (xbin,ybin: %d,%d to %d,%d)\n", + in->name, out->name, in->xBin, in->yBin, out->xBin, out->yBin); + return pmChipMosaic(outChip, inChip); +} + +bool ppImageMosaicFPA (pmConfig *config, char *outFile, char *inFile) +{ + bool status; // Status of MD lookup + + pmFPAfile *in = psMetadataLookupPtr(&status, config->files, inFile); // Input file + if (!status) { + psErrorStackPrint(stderr, "Can't find required I/O file!\n"); + exit(EXIT_FAILURE); + } + + pmFPAfile *out = psMetadataLookupPtr(&status, config->files, outFile); // Output file + if (!status) { + psErrorStackPrint(stderr, "Can't find required I/O file!\n"); + exit(EXIT_FAILURE); + } + + // XXX test printing of all concepts + #if 0 + for (int i = 0; i < in->fpa->chips->n; i++) { + pmChip *chip = in->fpa->chips->data[i]; + for (int j = 0; j < chip->cells->n; j++) { + pmCell *cell = chip->cells->data[j]; + psMetadataPrint(stdout, cell->concepts, 2); + } + } + #endif + + const char *name = psMetadataLookupStr(&status, in->fpa->concepts, "FPA.NAME"); // Name of FPA + + pmFPAview *view = pmFPAviewAlloc(0); + pmFPAAddSourceFromView(out->fpa, name, view, out->format); + psFree(view); + + psTrace ("pmFPAMosaic", 5, "mosaic fpa %s to %s (xbin,ybin: %d,%d to %d,%d)\n", + in->name, out->name, in->xBin, in->yBin, out->xBin, out->yBin); + return pmFPAMosaic(out->fpa, in->fpa); +} Index: /branches/rel-1-1/ppImage/src/ppImageOptions.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageOptions.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageOptions.c (revision 12167) @@ -0,0 +1,229 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +static void imageOptionsFree(ppImageOptions *options) +{ + psFree(options->overscan); + psFree(options->nonLinearData); + psFree(options->nonLinearSource); +} + +ppImageOptions *ppImageOptionsAlloc(void) +{ + ppImageOptions *options = psAlloc(sizeof(ppImageOptions)); + psMemSetDeallocator(options, (psFreeFunc)imageOptionsFree); + + // Initialise options + options->overscan = NULL; + options->nonLinearData = NULL; + options->nonLinearSource = NULL; + + // default flags for various activities + options->doMask = false; // Mask bad pixels + options->maskValue = 0xff; // Default mask value + + options->doNonLin = false; // Non-linearity correction + options->doBias = false; // Bias subtraction + options->doDark = false; // Dark subtraction + options->doOverscan = false; // Overscan subtraction + options->doShutter = false; // Shutter correction + options->doFlat = false; // Flat-field normalisation + options->doFringe = false; // Fringe subtraction + options->doPhotom = false; // Source identification and photometry + options->doAstromChip = false; // Astrometry + options->doAstromMosaic = false; // Astrometry + + options->BaseFITS = false; // create binned image (scale 1) + options->ChipFITS = false; // create binned image (scale 1) + options->FPA1FITS = false; // create binned image (scale 1) + options->FPA2FITS = false; // create binned image (scale 1) + + options->Bin1FITS = false; // create binned image (scale 1) + options->Bin2FITS = false; // create binned image (scale 2) + options->Bin1JPEG = false; // create jpeg of binned image (scale 1) + options->Bin2JPEG = false; // create jpeg of binned image (scale 2) + + // Overscan defaults + options->overscan = NULL; // Overscan options + + // Fringe defaults + options->fringeRej = NAN; + options->fringeIter = 0; + options->fringeKeep = 1.0; + + // Non-linearity default options + options->nonLinearType = 0; // Type of non-linearity data (vector, string or metadata) + options->nonLinearData = NULL; // The non-linearity data + options->nonLinearSource = NULL; // If the non-linearity data is a menu, this provides the key + + return options; +} + +ppImageOptions *ppImageOptionsParse(pmConfig *config) +{ + bool status; + ppImageOptions *options = ppImageOptionsAlloc (); + + // select the recipe for this analysis + bool mdStatus = false; // Result of MD lookup + psMetadata *recipe = psMetadataLookupMetadata(&mdStatus, config->recipes, RECIPE_NAME); + if (! mdStatus || !recipe) { + psLogMsg("ppImage", PS_LOG_ERROR, "Can't find recipe %s in the RECIPES.\n", RECIPE_NAME); + exit(EXIT_FAILURE); + } + + // Non-linearity recipe options + if (psMetadataLookupBool(NULL, recipe, "NONLIN")) { + psMetadataItem *dataItem = psMetadataLookup(recipe, "NONLIN.DATA"); + if (! dataItem) { + psLogMsg(__func__, PS_LOG_ERROR, "Non-linearity correction desired, but unable to " + "find NONLIN.DATA in recipe %s.", RECIPE_NAME); + exit(EXIT_FAILURE); + } + + options->doNonLin = true; + options->nonLinearType = dataItem->type; + options->nonLinearData = dataItem; + + switch (dataItem->type) { + // No immediate action required + case PS_DATA_VECTOR: + case PS_DATA_STRING: + break; + + // This is a menu; we need the key + case PS_DATA_METADATA: + { + bool status; + options->nonLinearSource = psMetadataLookupStr(&status, recipe, "NONLIN.SOURCE"); + if (! status || ! options->nonLinearSource) { + psLogMsg(__func__, PS_LOG_ERROR, "Non-linearity correction desired, but unable to " + "find NONLIN.SOURCE in recipe %s.", RECIPE_NAME); + exit(EXIT_FAILURE); + } + } + break; + default: + psLogMsg(__func__, PS_LOG_ERROR, "Non-linearity correction desired, but " + "NONLIN.DATA is of invalid type in recipe %s.", RECIPE_NAME); + exit(EXIT_FAILURE); + } + } + + // XXX PAP: The overscan stuff needs to be updated following the reworked API + + // Overscan recipe options + // XXX EAM : we should abort on invalid options. default options? + if (psMetadataLookupBool(NULL, recipe, "OVERSCAN")) { + options->doOverscan = true; + + // Do the overscan as a single value? + bool overscanSingle = psMetadataLookupBool(NULL, recipe, "OVERSCAN.SINGLE"); + + // How do we fit it? + pmFit overscanFit = PM_FIT_NONE; // Fit type for overscan + int overscanOrder = 0; // Order for overscan fit + psString fit = psMetadataLookupStr(NULL, recipe, "OVERSCAN.FIT"); + if (! strcasecmp(fit, "POLYNOMIAL")) { + overscanFit = PM_FIT_POLY_ORD; + overscanOrder = psMetadataLookupS32(NULL, recipe, "OVERSCAN.ORDER"); + } else if (! strcasecmp(fit, "CHEBYSHEV")) { + overscanFit = PM_FIT_POLY_CHEBY; + overscanOrder = psMetadataLookupS32(NULL, recipe, "OVERSCAN.ORDER"); + } else if (! strcasecmp(fit, "SPLINE")) { + overscanFit = PM_FIT_SPLINE; + } else if (strcasecmp(fit, "NONE")) { + psLogMsg(__func__, PS_LOG_WARN, + "OVERSCAN.FIT (%s) in recipe %s is not one of NONE, POLYNOMIAL, or SPLINE", + fit, RECIPE_NAME); + exit(EXIT_FAILURE); + } + + // What method do we use to measure the overscan statistics? + psStats *overscanStats = NULL; // Statistics for overscan + psString stat = psMetadataLookupStr(NULL, recipe, "OVERSCAN.STAT"); + if (! strcasecmp(stat, "MEAN")) { + overscanStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + } else if (! strcasecmp(stat, "MEDIAN")) { + overscanStats = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); + } else { + psErrorStackPrint(stderr, "OVERSCAN.STAT (%s) in recipe %s is not one of MEAN or MEDIAN", + stat, RECIPE_NAME); + exit(EXIT_FAILURE); + } + + // Fill in the options + options->overscan = pmOverscanOptionsAlloc(overscanSingle, overscanFit, overscanOrder, overscanStats); + psFree(overscanStats); + } + + // Mask recipe options + options->doMask = psMetadataLookupBool(NULL, recipe, "MASK"); + psMaskType maskValue = psMetadataLookupU8(&status, recipe, "MASK.VALUE"); + if (status) { + options->maskValue = maskValue; + } + + options->doBias = psMetadataLookupBool(NULL, recipe, "BIAS"); + options->doDark = psMetadataLookupBool(NULL, recipe, "DARK"); + options->doFlat = psMetadataLookupBool(NULL, recipe, "FLAT"); + options->doFringe = psMetadataLookupBool(NULL, recipe, "FRINGE"); + options->doShutter = psMetadataLookupBool(NULL, recipe, "SHUTTER"); + + // binned image options + options->xBin1 = psMetadataLookupS32(&status, recipe, "BIN1.XBIN"); + if (!status) { + psWarning("BIN1.XBIN not found in recipe: setting to default value.\n"); + options->xBin1 = 16; + } + options->yBin1 = psMetadataLookupS32(&status, recipe, "BIN1.YBIN"); + if (!status) { + psWarning("BIN1.YBIN not found in recipe: setting to default value.\n"); + options->yBin1 = 16; + } + + options->xBin2 = psMetadataLookupS32(&status, recipe, "BIN2.XBIN"); + if (!status) { + psWarning("BIN2.XBIN not found in recipe: setting to default value.\n"); + options->xBin1 = 16; + } + options->yBin2 = psMetadataLookupS32(&status, recipe, "BIN2.YBIN"); + if (!status) { + psWarning("BIN2.YBIN not found in recipe: setting to default value.\n"); + options->yBin1 = 16; + } + + options->BaseFITS = psMetadataLookupBool(NULL, recipe, "BASE.FITS"); + options->ChipFITS = psMetadataLookupBool(NULL, recipe, "CHIP.FITS"); + options->FPA1FITS = psMetadataLookupBool(NULL, recipe, "FPA1.FITS"); + options->FPA2FITS = psMetadataLookupBool(NULL, recipe, "FPA2.FITS"); + + options->Bin1FITS = psMetadataLookupBool(NULL, recipe, "BIN1.FITS"); + options->Bin1JPEG = psMetadataLookupBool(NULL, recipe, "BIN1.JPEG"); + options->Bin2FITS = psMetadataLookupBool(NULL, recipe, "BIN2.FITS"); + options->Bin2JPEG = psMetadataLookupBool(NULL, recipe, "BIN2.JPEG"); + + options->doPhotom = psMetadataLookupBool(NULL, recipe, "PHOTOM"); + options->doAstromChip = psMetadataLookupBool(NULL, recipe, "ASTROM.CHIP"); + options->doAstromMosaic = psMetadataLookupBool(NULL, recipe, "ASTROM.MOSAIC"); + if ((options->doAstromChip || options->doAstromMosaic) && !options->doPhotom) { + psLogMsg(__func__, PS_LOG_ERROR, "Invalid PPIMAGE options: cannot do ASTROMetry without PHOTOMetry"); + exit(EXIT_FAILURE); + } + + options->doAddstar = psMetadataLookupBool(NULL, recipe, "ADDSTAR"); + if (options->doAddstar && !(options->doAstromChip || options->doAstromMosaic)) { + psLogMsg(__func__, PS_LOG_ERROR, "Invalid PPIMAGE options: cannot Addstar without Astrometry"); + exit(EXIT_FAILURE); + } + + // Fringe options + options->fringeRej = psMetadataLookupF32(NULL, recipe, "FRINGE.REJ"); + options->fringeIter = psMetadataLookupS32(NULL, recipe, "FRINGE.ITER"); + options->fringeKeep = psMetadataLookupF32(NULL, recipe, "FRINGE.KEEP"); + + return options; +} Index: /branches/rel-1-1/ppImage/src/ppImageOptions.h =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageOptions.h (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageOptions.h (revision 12167) @@ -0,0 +1,51 @@ +#ifndef PP_IMAGE_OPTIONS_H +#define PP_IMAGE_OPTIONS_H + +// Options for ppImage processing +typedef struct { + bool doMask; // Mask bad pixels + psMaskType maskValue; // apply this bit-mask to choose masked bits + + bool doBias; // Bias subtraction + bool doDark; // Dark subtraction + bool doShutter; // Shutter correction + bool doFlat; // Flat-field normalisation + bool doFringe; // Fringe subtraction + bool doPhotom; // Source identification and photometry + bool doAstromChip; // per-chip Astrometry + bool doAstromMosaic; // full-mosaic Astrometry + bool doAddstar; // add results to object database? + + bool doOverscan; // Overscan subtraction + pmOverscanOptions *overscan; // Overscan options + + bool doNonLin; // Non-linearity correction + psDataType nonLinearType; + psMetadataItem *nonLinearData; + void *nonLinearSource; + + bool BaseFITS; + bool ChipFITS; + bool FPA1FITS; + bool FPA2FITS; + + bool Bin1FITS; + bool Bin1JPEG; + int xBin1, yBin1; + + bool Bin2FITS; + bool Bin2JPEG; + int xBin2, yBin2; + + float fringeRej; // Fringe rejection limit + int fringeIter; // Fringe iterations + float fringeKeep; // Fringe keep fraction + +} ppImageOptions; + +ppImageOptions *ppImageOptionsAlloc(void); + +// Determine the processing options +ppImageOptions *ppImageOptionsParse(pmConfig *config); + +#endif Index: /branches/rel-1-1/ppImage/src/ppImageParseCamera.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageParseCamera.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageParseCamera.c (revision 12167) @@ -0,0 +1,277 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +// XXX clean up error checks: return NULL, not psAbort +ppImageOptions *ppImageParseCamera (pmConfig *config) { + + bool status = false; + + // the input image defines the camera, and all recipes and options the follow + pmFPAfile *input = pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.INPUT", "INPUT"); + if (!status || !input) { + psError(PS_ERR_IO, false, "Failed to build FPA from PPIMAGE.INPUT"); + return NULL; + } + +#if 0 + // the input image defines the camera, and all recipes and options the follow + pmFPAfile *inputMask = pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.INPUT.MASK", "INPUT.MASK"); + if (!status || !inputMask) { + psError(PS_ERR_IO, false, "Failed to build FPA from PPIMAGE.INPUT.MASK"); + return NULL; + } + + // the input image defines the camera, and all recipes and options the follow + pmFPAfile *inputWeight = pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.INPUT.WEIGHT", "INPUT.WEIGHT"); + if (!status || !inputWeight) { + psError(PS_ERR_IO, false, "Failed to build FPA from PPIMAGE.INPUT.WEIGHT"); + return NULL; + } +#endif + + // add recipe options supplied on command line + psMetadata *recipe = psMetadataLookupPtr (&status, config->recipes, RECIPE_NAME); + + // parse the options from the metadata format to the ppImageOptions structure + ppImageOptions *options = ppImageOptionsParse (config); + + // the following are defined from the argument list, if given, + // otherwise they revert to the config information + // not all input or output images are used in a given recipe + if (options->doBias) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.BIAS", "BIAS"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.BIAS"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.BIAS", input->fpa, PM_DETREND_TYPE_BIAS); + if (!status) { + psError (PS_ERR_IO, false, "can't find a bias image source"); + return NULL; + } + } + if (options->doDark) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.DARK", "DARK"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.DARK"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.DARK", input->fpa, PM_DETREND_TYPE_DARK); + if (!status) { + psError (PS_ERR_IO, false, "can't find a dark image source"); + return NULL; + } + } + if (options->doMask) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.MASK", "MASK"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.MASK"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.MASK", input->fpa, PM_DETREND_TYPE_MASK); + if (!status) { + psError (PS_ERR_IO, false, "can't find a mask image source"); + return NULL; + } + } + if (options->doShutter) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.SHUTTER", "SHUTTER"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.SHUTTER"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.SHUTTER", input->fpa, PM_DETREND_TYPE_SHUTTER); + if (!status) { + psError (PS_ERR_IO, false, "can't find a shutter image source"); + return NULL; + } + } + + if (options->doFlat) { + // if we fail to find the item in Args, we try again in Conf, then DetDB + // we need to handle the errors and catch serious errors, as opposed to + // data-not-found errors + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.FLAT", "FLAT"); + psErrorClear(); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.FLAT"); + psErrorClear(); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.FLAT", input->fpa, PM_DETREND_TYPE_FLAT); + if (!status) { + psError (PS_ERR_IO, false, "can't find a flat image source"); + return NULL; + } + } + + // fringe frame are only applied for a subset of the filters. + // if the filter is one of those identified by a FRINGE.FILTERS metadata entry + // in ppImage.config, apply the fringe frame + if (options->doFringe) { + // determine filter from the concepts + const char *filter = psMetadataLookupStr(&status, input->fpa->concepts, "FPA.FILTER"); + if (!status || !filter || strlen(filter) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FPA.FILTER.\n"); + return NULL; + } + + // select FRINGE.FILTERS from the recipe and test if the filter matches + // is the mdi saved with psList or string? + psMetadataItem *mdi = psMetadataLookup (recipe, "FRINGE.FILTERS"); + if (mdi == NULL) { + // no valid filters for fringe data for this camera + options->doFringe = false; + goto skip_fringe; + } + // place entry on a list regardless of type + psList *filters = NULL; + if (mdi->type == PS_DATA_STRING) { + filters = psListAlloc(NULL); + psListAdd (filters, PS_LIST_HEAD, mdi); + } else if (mdi->type == PS_DATA_METADATA_MULTI) { + filters = psMemIncrRefCounter(mdi->data.list); + } else { + psAbort("invalid type for FRINGE.FILTERS"); + } + + // search through list to find the current filter + psListIterator *iter = psListIteratorAlloc (filters, PS_LIST_HEAD, FALSE); + options->doFringe = false; + for (int i = 0; !options->doFringe && (i < filters->n); i++) { + psMetadataItem *item = psListGetAndIncrement (iter); + char *validFilter = item->data.V; + if (strcmp (validFilter, filter)) continue; + options->doFringe = true; + } + psFree(iter); + psFree(filters); + } +skip_fringe: + if (options->doFringe) { + bool status = false; + pmFPAfileDefineFromArgs (&status, config, "PPIMAGE.FRINGE", "FRINGE"); + pmFPAfileDefineFromConf (&status, config, "PPIMAGE.FRINGE"); + pmFPAfileDefineFromDetDB (&status, config, "PPIMAGE.FRINGE", input->fpa, PM_DETREND_TYPE_FRINGE_IMAGE); + if (!status) { + psError (PS_ERR_IO, false, "can't find a fringe image source"); + return NULL; + } + } + + // the following files are output targets + pmFPAfile *output = pmFPAfileDefineOutput(config, input->fpa, "PPIMAGE.OUTPUT"); + if (!output) { + psError(PS_ERR_IO, false, _("Unable to generate output file from PPIMAGE.OUTPUT")); + psFree(options); + return NULL; + } + pmFPAfile *outMask = pmFPAfileDefineOutput(config, input->fpa, "PPIMAGE.OUTPUT.MASK"); + if (!outMask) { + psError(PS_ERR_IO, false, _("Unable to generate output file from PPIMAGE.OUTPUT.MASK")); + psFree(options); + return NULL; + } + pmFPAfile *outWeight = pmFPAfileDefineOutput(config, input->fpa, "PPIMAGE.OUTPUT.WEIGHT"); + if (!outWeight) { + psError(PS_ERR_IO, false, _("Unable to generate output file from PPIMAGE.OUTPUT.WEIGHT")); + psFree(options); + return NULL; + } + pmFPAfile *byChip = pmFPAfileDefineChipMosaic(config, input->fpa, "PPIMAGE.OUTPUT.CHIP"); + if (!byChip) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.OUTPUT.CHIP")); + psFree(options); + return NULL; + } + pmFPAfile *byFPA1 = pmFPAfileDefineFPAMosaic(config, input->fpa, "PPIMAGE.OUTPUT.FPA1"); + if (!byFPA1) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.OUTPUT.FPA1")); + psFree(options); + return NULL; + } + pmFPAfile *byFPA2 = pmFPAfileDefineFPAMosaic(config, input->fpa, "PPIMAGE.OUTPUT.FPA2"); + if (!byFPA2) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.OUTPUT.FPA2")); + psFree(options); + return NULL; + } + + // save any of these files? + output->save = options->BaseFITS; + byChip->save = options->ChipFITS; + byFPA1->save = options->FPA1FITS; + byFPA2->save = options->FPA2FITS; + + // output is used as a carrier: input to byChip + output->freeLevel = PM_FPA_LEVEL_CHIP; + + // define the binned target files (which may just be carriers for some camera configurations) + pmFPAfile *bin1 = pmFPAfileDefineFromFPA (config, byChip->fpa, options->xBin1, options->yBin1, "PPIMAGE.BIN1"); + if (!bin1) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.BIN1")); + psFree(options); + return NULL; + } + + pmFPAfile *bin2 = pmFPAfileDefineFromFPA (config, byChip->fpa, options->xBin2, options->yBin2, "PPIMAGE.BIN2"); + if (!bin2) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.BIN2")); + psFree(options); + return NULL; + } + + // bin1 and bin2 are used as carriers: input for byFPA1, byFPA2 + bin1->freeLevel = PM_FPA_LEVEL_FPA; + bin2->freeLevel = PM_FPA_LEVEL_FPA; + + pmFPAfile *jpg1 = pmFPAfileDefineOutput (config, byFPA1->fpa, "PPIMAGE.JPEG1"); + if (!jpg1) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.JPEG1")); + psFree(options); + return NULL; + } + pmFPAfile *jpg2 = pmFPAfileDefineOutput (config, byFPA2->fpa, "PPIMAGE.JPEG2"); + if (!jpg2) { + psError(PS_ERR_IO, false, _("Unable to generate new file from PPIMAGE.JPEG2")); + psFree(options); + return NULL; + } + + // XXX we could potentially not define these pmFPAfiles if no output is requested... + bin1->save = options->Bin1FITS; + bin2->save = options->Bin2FITS; + jpg1->save = options->Bin1JPEG; + jpg2->save = options->Bin2JPEG; + + // Chip selection: turn on only the chips specified (pass status to suppress missing-key log msg) + char *chipLine = psMetadataLookupStr(&status, config->arguments, "CHIP_SELECTIONS"); + psArray *chips = psStringSplitArray (chipLine, ",", false); + if (chips->n > 0) { + pmFPASelectChip (input->fpa, -1, true); // deselect all chips + for (int i = 0; i < chips->n; i++) { + int chipNum = atoi(chips->data[i]); + if (! pmFPASelectChip(input->fpa, chipNum, false)) { + psError(PS_ERR_IO, false, "Chip number %d doesn't exist in camera.\n", chipNum); + return false; + } + } + } + psFree (chips); + + if (psMetadataLookupBool(NULL, recipe, "INPUT_IS_FRINGE")) { + // It's a fringe file, so change the file type + input->type = PM_FPA_FILE_FRINGE; + output->type = PM_FPA_FILE_FRINGE; + } + + +#if 0 + // Get a look inside all the files. + psMetadataIterator *filesIter = psMetadataIteratorAlloc(config->files, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item; // Item from iteration + fprintf(stderr, "Files:\n"); + while ((item = psMetadataGetAndIncrement(filesIter))) { + pmFPAfile *file = item->data.V; // File of interest + fprintf(stderr, "%s: %p %p %p (%p) %p\n", file->name, + file->src, file->fpa, + file->camera, file->fpa->camera, file->format); + } + psFree(filesIter); +#endif + + return (options); +} Index: /branches/rel-1-1/ppImage/src/ppImagePhotom.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImagePhotom.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImagePhotom.c (revision 12167) @@ -0,0 +1,151 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +# include "ppImage.h" + +// the top portion of this function is equivalent to psphotParseCamera, +// but different in a few important ways. +// XXX move this section to ppImageParseCamera? +bool ppImagePhotom (pmConfig *config, pmFPAview *view) { + + bool status; + pmCell *cell; + pmReadout *readout; + + psphotModelGroupInit (); + + // select recipe options supplied on command line + psMetadata *recipe = psMetadataLookupPtr (&status, config->recipes, PSPHOT_RECIPE); + + // find or define a pmFPAfile PSPHOT.INPUT + pmFPAfile *input = psMetadataLookupPtr (&status, config->files, "PSPHOT.INPUT"); + if (!status) { + // psphotReadout requires a pmFPAfile supplied with the name PSPHOT.INPUT + // create a pmFPAfile which points to PPIMAGE.OUTPUT.CHIP (guaranteed to be mosaiced by chip) + // mode is 'REFERENCE' to prevent double frees of the fpa + pmFPAfile *output = psMetadataLookupPtr (&status, config->files, "PPIMAGE.OUTPUT.CHIP"); + input = pmFPAfileDefineInput (config, output->fpa, "PSPHOT.INPUT"); + input->mode = PM_FPA_MODE_REFERENCE; + + // we set the freeLevel to be FPA so this pmFPAfile may be used as input to psastro + // XXX make this the resonsibility of a ppImageAstrom call? + // XXX test for psastro requests? + // XXX need to make this an INTERNAL file if output is not requested. + bool saveOutput = psMetadataLookupBool (NULL, recipe, "SAVE.OUTPUT"); + if (saveOutput) { + pmFPAfile *outfile = pmFPAfileDefineOutput (config, input->fpa, "PSPHOT.OUTPUT"); + outfile->freeLevel = PM_FPA_LEVEL_FPA; + } + } + + // if we have requested PSPHOT.SRC (externally supplied sources), attempt to resolve it + if (psMetadataLookupPtr(NULL, config->arguments, "PSPHOT.SRC")) { + pmFPAfileDefineFromArgs (&status, config, "PSPHOT.SRC", "PSPHOT.SRC"); + if (!status) { + psError(PSPHOT_ERR_CONFIG, false, "Failed to find/build PSPHOT.SRC"); + return status; + } + } + + // NOTE the difference here from psphotParseCamera: the mask and weight + // images are supplied by ppImage and need not / should not be loaded here. + + // optionally load the PSF Model and/or fixed stars + pmFPAfileBindFromArgs (NULL, input, config, "PSPHOT.PSF", "PSPHOT.PSF"); + + // set default recipe values here + // XXX place this in a psphot library function? + psMetadataAddStr (recipe, PS_LIST_TAIL, "FITMODE", PS_META_NO_REPLACE, "default fitting mode", "NONE"); + psMetadataAddStr (recipe, PS_LIST_TAIL, "BREAK_POINT", PS_META_NO_REPLACE, "default break point", "NONE"); + psMetadataAddF32 (recipe, PS_LIST_TAIL, "ZERO_PT", PS_META_NO_REPLACE, "default zero point", 25.00); + psMetadataAddS32 (recipe, PS_LIST_TAIL, "BACKGROUND.XBIN", PS_META_NO_REPLACE, "default binning", 64); + psMetadataAddS32 (recipe, PS_LIST_TAIL, "BACKGROUND.YBIN", PS_META_NO_REPLACE, "default binning", 64); + + // determine PHOTCODE from fpa & view, overwrite in recipe + char *photcode = pmConceptsPhotcodeForView (config, input, view); + if (photcode) { + psMetadataAddStr (recipe, PS_LIST_TAIL, "PHOTCODE", PS_META_REPLACE, "photcode from FPA concepts", photcode); + psFree (photcode); + } + + // optionally save the residual image + if (psMetadataLookupBool(NULL, recipe, "SAVE.RESID")) { + if (!pmFPAfileDefineOutput (config, input->fpa, "PSPHOT.RESID")) { + psError(PSPHOT_ERR_CONFIG, false, "Cannot find a rule for PSPHOT.BACKMDL"); + return false; + } + } + + int DX = psMetadataLookupS32 (&status, recipe, "BACKGROUND.XBIN"); + int DY = psMetadataLookupS32 (&status, recipe, "BACKGROUND.YBIN"); + + // these calls construct a new fpa for the I/O handle + + // optionally save the background model (small FITS image) + if (psMetadataLookupBool(NULL, recipe, "SAVE.BACKMDL")) { + if (!pmFPAfileDefineFromFPA (config, input->fpa, DX, DY, "PSPHOT.BACKMDL")) { + psError(PSPHOT_ERR_CONFIG, false, "Cannot find a rule for PSPHOT.BACKMDL"); + return false; + } + } + // optionally save the full background image + if (psMetadataLookupBool(NULL, recipe, "SAVE.BACKGND")) { + if (!pmFPAfileDefineFromFPA (config, input->fpa, 1, 1, "PSPHOT.BACKGND")) { + psError(PSPHOT_ERR_CONFIG, false, "Cannot find a rule for PSPHOT.BACKGND"); + return false; + } + } + // optionally save the background-subtracted image + if (psMetadataLookupBool(NULL, recipe, "SAVE.BACKSUB")) { + if (!pmFPAfileDefineFromFPA (config, input->fpa, 1, 1, "PSPHOT.BACKSUB")) { + psError(PSPHOT_ERR_CONFIG, false, "Cannot find a rule for PSPHOT."); + return false; + } + } + // optionally save the PSF Model + if (psMetadataLookupBool(NULL, recipe, "SAVE.PSF")) { + if (!pmFPAfileDefineOutput (config, input->fpa, "PSPHOT.PSF.SAVE")) { + psError(PSPHOT_ERR_CONFIG, false, "Cannot find a rule for PSPHOT.PSF.SAVE"); + return false; + } + } + + // optionally save output plots + if (psMetadataLookupBool(NULL, recipe, "SAVE.PLOTS")) { + if (!pmFPAfileDefineOutput (config, input->fpa, "SOURCE.PLOT.MOMENTS")) { + psTrace ("psphot", 3, "Cannot find a rule for SOURCE.PLOT.MOMENTS"); + } + if (!pmFPAfileDefineOutput (config, input->fpa, "SOURCE.PLOT.PSFMODEL")) { + psTrace ("psphot", 3, "Cannot find a rule for SOURCE.PLOT.PSFMODEL"); + } + } + + // XXX not tested (or defined?) + // pmFPAfileConstruct (config->files, format, config->camera, "PSPHOT.PSF_SAMPLE"); + + // XXX probably need to deactivate all files and activate the psphot ones explicitly + + // In this section, we iterate over the cells and readout for this chip + // and run the psphot analysis routine here + // XXX worry about this not having unique PHOTCODES... + // view->cell = -1; + // iterate over the cells in the current chip + while ((cell = pmFPAviewNextCell (view, input->fpa, 1)) != NULL) { + psLogMsg ("ppImagePhotom", 4, "Cell %d: %x %x\n", view->cell, cell->file_exists, cell->process); + if (! cell->process || ! cell->file_exists) { continue; } + + // process each of the readouts + while ((readout = pmFPAviewNextReadout (view, input->fpa, 1)) != NULL) { + if (! readout->data_exists) { continue; } + + // run the actual photometry analysis + psphotReadout (config, view); + } + } + + // the PSPHOT.INPUT file is a temporary file used to carry PPIMAGE.OUTPUT.CHIP to psphotReadout + pmFPAfileActivate (config->files, false, "PSPHOT.INPUT"); + + return true; +} Index: /branches/rel-1-1/ppImage/src/ppImageRebinReadout.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageRebinReadout.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageRebinReadout.c (revision 12167) @@ -0,0 +1,100 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include "ppImage.h" + +bool ppImageRebinChip (pmConfig *config, pmFPAview *view, char *outName, char *inName) { + + pmCell *cell; + pmReadout *inReadout, *outReadout; + + pmFPAfile *inFile = psMetadataLookupPtr (NULL, config->files, inName); + if (inFile == NULL) return false; + + pmFPAfile *outFile = psMetadataLookupPtr (NULL, config->files, outName); + if (outFile == NULL) return false; + + // XXX double check that chip != -1? + + pmChip *inChip = pmFPAviewThisChip (view, inFile->fpa); + pmChip *outChip = pmFPAviewThisChip (view, outFile->fpa); + if (!pmChipCopyStructure (outChip, inChip, outFile->xBin, outFile->yBin)) { + psError(PS_ERR_UNKNOWN, false, "Unable to copy chip structure."); + return false; + } + + while ((cell = pmFPAviewNextCell (view, inFile->fpa, 1)) != NULL) { + psLogMsg ("ppImageRebinChip", 4, "Cell %d: %x %x\n", view->cell, cell->file_exists, cell->process); + if (! cell->process || ! cell->file_exists) { continue; } + + // process each of the readouts + while ((inReadout = pmFPAviewNextReadout (view, inFile->fpa, 1)) != NULL) { + if (! inReadout->data_exists) { continue; } + + outReadout = pmFPAviewThisReadout (view, outFile->fpa); + + // run the rebin code + ppImageRebinReadout (outReadout, inReadout, outFile); + } + + // Get the original values for the binning + bool mdok = true; // Status of MD lookup + int xBin = psMetadataLookupS32(&mdok, cell->concepts, "CELL.XBIN"); // The binning in x + if (!mdok || xBin <= 0) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.XBIN is not set --- assuming 1.\n"); + xBin = 1; + } + int yBin = psMetadataLookupS32(&mdok, cell->concepts, "CELL.YBIN"); // The binning in y + if (!mdok || yBin <= 0) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.YBIN is not set --- assuming 1.\n"); + yBin = 1; + } + + // Update the concepts with the new values for the binning + pmCell *outCell = pmFPAviewThisCell(view, outFile->fpa); // The output cell + psMetadataItem *binItem = psMetadataLookup(outCell->concepts, "CELL.XBIN"); + binItem->data.S32 = xBin * outFile->xBin; + binItem = psMetadataLookup(outCell->concepts, "CELL.YBIN"); + binItem->data.S32 = yBin * outFile->yBin; + } + + return true; +} + +bool ppImageRebinReadout (pmReadout *output, pmReadout *input, pmFPAfile *outFile) +{ + PS_ASSERT_PTR_NON_NULL(output, false); + PS_ASSERT_IMAGE_NON_NULL(output->image, false); + PS_ASSERT_PTR_NON_NULL(input, false); + PS_ASSERT_IMAGE_NON_NULL(input->image, false); + PS_ASSERT_PTR_NON_NULL(outFile, false); + + // the binning process must not change the size of the output image... + // psStats *stats = psStatsAlloc (PS_STATS_SAMPLE_MEAN); + // psImageRebin (output->image, input->image, NULL, 0, scale, stats); + // psFree (stats); + + int dX = outFile->xBin; + int dY = outFile->yBin; + + int nX = input->image->numCols; + int nY = input->image->numRows; + + // do the rebinning by hand, mean only for test + for (int yOut = 0; yOut < output->image->numRows; yOut++) { + for (int xOut = 0; xOut < output->image->numCols; xOut++) { + float value = 0; + int nPix = 0; + for (int yIn = yOut * dY; (yIn < yOut * dY + dY) && (yIn < nY); yIn ++) { + for (int xIn = xOut * dX; (xIn < xOut * dX + dX) && (xIn < nX); xIn ++) { + value += input->image->data.F32[yIn][xIn]; + nPix ++; + } + } + output->image->data.F32[yOut][xOut] = value / nPix; + } + } + + return true; +} Index: /branches/rel-1-1/ppImage/src/ppImageVersion.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageVersion.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageVersion.c (revision 12167) @@ -0,0 +1,68 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include + +#include "ppImageVersion.h" + +static const char *cvsTag = "$Name: not supported by cvs2svn $";// CVS tag name + +psString ppImageVersion(void) +{ + psString version = NULL; // Version, to return + psStringAppend(&version, "%s-%s",PACKAGE_NAME,PACKAGE_VERSION); + return version; +} + +psString ppImageVersionLong(void) +{ + psString version = ppImageVersion(); // Version, to return + psString tag = psStringStripCVS(cvsTag, "Name"); // CVS tag + psStringAppend(&version, " (cvs tag %s) %s, %s", tag, __DATE__, __TIME__); + psFree(tag); + return version; +} + + +void ppImageVersionMetadata(psMetadata *metadata) +{ + PS_ASSERT_METADATA_NON_NULL(metadata,); + + psString pslib = psLibVersionLong();// psLib version + psString psmodules = psModulesVersionLong(); // psModules version + psString psphot = psphotVersionLong(); // psphot version + psString psastro = psastroVersionLong(); // psastro version + psString ppStats = ppStatsVersionLong(); // ppStats version + psString ppImage = ppImageVersionLong(); // ppImage version + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now + psString timeString = psTimeToISO(time); // The time in an ISO string + psFree(time); + psString head = NULL; // Head string + psStringAppend(&head, "ppImage processing at %s. Component information:", timeString); + psFree(timeString); + + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, head, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, pslib, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, psmodules, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, psphot, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, psastro, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, ppStats, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, ppImage, ""); + + psFree(head); + psFree(pslib); + psFree(psmodules); + psFree(psphot); + psFree(psastro); + psFree(ppStats); + psFree(ppImage); + + return; +} Index: /branches/rel-1-1/ppImage/src/ppImageVersion.h =================================================================== --- /branches/rel-1-1/ppImage/src/ppImageVersion.h (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppImageVersion.h (revision 12167) @@ -0,0 +1,14 @@ +#ifndef PP_IMAGE_VERSION_H +#define PP_IMAGE_VERSION_H + +/// Return short version information +psString ppImageVersion(void); + +/// Return long version information +psString ppImageVersionLong(void); + +/// Update the metadata with version information for all dependencies +void ppImageVersionMetadata(psMetadata *metadata ///< Metadata to update with version information + ); + +#endif Index: /branches/rel-1-1/ppImage/src/ppTest.c =================================================================== --- /branches/rel-1-1/ppImage/src/ppTest.c (revision 12167) +++ /branches/rel-1-1/ppImage/src/ppTest.c (revision 12167) @@ -0,0 +1,187 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include + +#include "pslib.h" +#include "psmodules.h" + +int main(int argc, char *argv[]) +{ + psLibInit(NULL); + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// ppImageConfig.c +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + pmConfig *config = pmConfigRead(&argc, argv, "PPIMAGE"); + if (! config) { + psErrorStackPrint(stderr, "Can't find site configuration!\n"); + exit(EXIT_FAILURE); + } + + // Parse other command-line arguments + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-key", 0, "exposure ID", ""); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-bias", 0, "Name of the bias image", ""); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-dark", 0, "Name of the dark image", ""); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-flat", 0, "Name of the flat-field image", ""); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-mask", 0, "Name of the mask image", ""); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-fringe", 0, "Name of the fringe image", ""); + psMetadataAddS32(config->arguments, PS_LIST_TAIL, "-chip", 0, "Chip number to process (if positive)", -1); + + if (! psArgumentParse(config->arguments, &argc, argv) || argc != 3) { + printf("\nPan-STARRS Phase 2 processing\n\n"); + printf("Usage: %s INPUT.fits OUTPUT.fits\n\n", argv[0]); + psArgumentHelp(config->arguments); + psFree(config->arguments); + exit(EXIT_FAILURE); + } + + // Add the input and output images (which remain on the command-line) to the arguments list + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-input", 0, "Name of the input image", argv[1]); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-output", 0, "Name of the output image", argv[2]); + + // Define database handle, if used +#if 0 + config->database = pmConfigDB(config->site); +#endif + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// ppImageParseCamera.c extract with some alterations +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + + const char *inName = psMetadataLookupStr(NULL, config->arguments, "-input"); + psLogMsg("ppImage", PS_LOG_INFO, "Opening input image: %s\n", inName); + psFits *inFile = psFitsOpen(inName, "r"); // File handle for FITS file + if (! inFile) { + // There's no point in continuing if we can't open the input + psErrorStackPrint(stderr, "Can't open input image: %s\n", inName); + exit(EXIT_FAILURE); + } + psMetadata *phu = psFitsReadHeader(NULL, inFile); // FITS primary header + + psMetadata *cameraFormat = pmConfigCameraFormatFromHeader(config, phu); + if (! config->camera) { + cameraFormat = pmConfigCameraFormatFromHeader(config, phu); + if (! config->camera) { + // There's no point in continuing if we can't recognise what we've got + psErrorStackPrint(stderr, "Can't find camera configuration!\n"); + exit(EXIT_FAILURE); + } + } + // Determine the correct recipe to use + if (! config->recipes && !pmConfigReadRecipes(config, PM_RECIPE_SOURCE_CAMERA | PM_RECIPE_SOURCE_CL)) { + // There's no point in continuing if we can't work out what recipes to use + psErrorStackPrint(stderr, "Can't find recipe configuration!\n"); + exit(EXIT_FAILURE); + } + +#if 1 + const char *outName = psMetadataLookupStr(NULL, config->arguments, "-output"); + psLogMsg("ppImage", PS_LOG_INFO, "Opening output image: %s\n", outName); + psFits *outFile = psFitsOpen(outName, "w"); + if (!outFile) { + // There's no point in continuing if we can't open the output + psErrorStackPrint(stderr, "Can't open output image: %s\n", outName); + exit(EXIT_FAILURE); + } +#endif + + // Construct camera in preparation for reading + pmFPA *fpa = pmFPAConstruct(config->camera); + pmFPAview *view = pmFPAAddSourceFromHeader(fpa, phu, cameraFormat); + printf("View chip: %d\n", view->chip); + printf("View cell: %d\n", view->cell); + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// The action happens here +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + + pmFPAPrint(stdout, fpa, false, true); + exit(0); + + +#if 0 + // A mosaic + psMetadata *mosaicCamera = psMetadataConfigRead(NULL, NULL, "/home/mithrandir/price/ipp/config/mcshort_mosaic/camera.config", true); + pmFPA *mosaicFPA = pmFPAConstruct(mosaicCamera); + psMetadata *mosaicFormat = psMetadataConfigRead(NULL, NULL, "/home/mithrandir/price/ipp/config/mcshort_mosaic/format_mosaic.config", true); + pmFPAview *mosaicView = pmFPAviewAlloc(0); + pmFPAAddSourceFromView(mosaicFPA, mosaicView, mosaicFormat); + psFree(mosaicView); +#endif + + // Read the FPA + pmFPARead(fpa, inFile, NULL); + +#if 1 + psArray *chips = fpa->chips; + pmFPAWrite(fpa, outFile, NULL, false, false); + for (int i = 0; i < chips->n; i++) { + printf("Chip %d\n", i); + pmChip *chip = chips->data[i]; +#if 1 + //pmChipRead(chip, inFile, NULL); + pmChipWrite(chip, outFile, NULL, false, false); + psArray *cells = chip->cells; + for (int j = 0; j < cells->n; j++) { + pmCell *cell = cells->data[j]; + pmCellWrite(cell, outFile, NULL, false); +#if 0 // Read bit by bit + pmReadout *readout = pmReadoutAlloc(cell); + for (int z = 0; pmReadoutReadNext(readout, inFile, z, 512); z++) { + do { + printf("Chip %d, Cell %d, Plane %d, row0 = %d\n", i, j, z, readout->row0); + pmReadoutWriteNext(readout, outFile, z); + //pmFPAPrint(stdout, fpa, false, true); + } while (pmReadoutReadNext(readout, inFile, z, 512)); + } + psFree(readout); +#else // Read the whole cell at once + pmCellRead(cell, inFile, NULL); + pmCellWrite(cell, outFile, NULL, true); +#endif + } +#endif + +#if 0 + pmChipMosaic(mosaicFPA->chips->data[i], chip); + pmChipWrite(mosaicFPA->chips->data[i], outFile, NULL, true, true); + pmChipFreeData(chip); + pmChipFreeData(mosaicFPA->chips->data[i]); +#endif + } +#endif + +#if 0 + pmFPAMosaic(mosaicFPA, fpa); + pmFPAWrite(mosaicFPA, outFile, NULL, true, true); + //pmFPAPrint(stdout, mosaicFPA, true, true); + psFree(mosaicCamera); + psFree(mosaicFormat); + psFree(mosaicView); + //psFree(mosaicFPA); +#endif + +#if 1 + pmFPAPrint(stdout, fpa, true, true); +#endif + +#if 1 + psFitsClose(outFile); +#endif + + psFree(view); + psFree(phu); + psFree(fpa); + psFree(config); + psFitsClose(inFile); + psFree(cameraFormat); + + pmConceptsDone(); + pmConfigDone(); + psLibFinalize(); + + // Pau. +} Index: /branches/rel-1-1/ppImage/test/.cvsignore =================================================================== --- /branches/rel-1-1/ppImage/test/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppImage/test/.cvsignore (revision 12167) @@ -0,0 +1,3 @@ +.gdb_history +*.fits +leaks.dat Index: /branches/rel-1-1/ppImage/test/nonlin.dat =================================================================== --- /branches/rel-1-1/ppImage/test/nonlin.dat (revision 12167) +++ /branches/rel-1-1/ppImage/test/nonlin.dat (revision 12167) @@ -0,0 +1,106 @@ +# Non-linearity correction lookup table +# Col 1: Input value +# Col 2: Corrected value +0 0 +100 1 +200 2 +300 3 +400 4 +500 5 +600 6 +700 7 +800 8 +900 9 +1000 10 +1100 11 +1200 12 +1300 13 +1400 14 +1500 15 +1600 16 +1700 17 +1800 18 +1900 19 +2000 20 +2100 21 +2200 22 +2300 23 +2400 24 +2500 25 +2600 26 +2700 27 +2800 28 +2900 29 +3000 30 +3100 31 +3200 32 +3300 33 +3400 34 +3500 35 +3600 36 +3700 37 +3800 38 +3900 39 +4000 40 +4100 41 +4200 42 +4300 43 +4400 44 +4500 45 +4600 46 +4700 47 +4800 48 +4900 49 +5000 50 +5100 51 +5200 52 +5300 53 +5400 54 +5500 55 +5600 56 +5700 57 +5800 58 +5900 59 +6000 60 +6100 61 +6200 62 +6300 63 +6400 64 +6500 65 +6600 66 +6700 67 +6800 68 +6900 69 +7000 70 +7100 71 +7200 72 +7300 73 +7400 74 +7500 75 +7600 76 +7700 77 +7800 78 +7900 79 +8000 80 +8100 81 +8200 82 +8300 83 +8400 84 +8500 85 +8600 86 +8700 87 +8800 88 +8900 89 +9000 90 +9100 91 +9200 92 +9300 93 +9400 94 +9500 95 +9600 96 +9700 97 +9800 98 +9900 99 +10000 100 +10001 100 +1e6 100 Index: /branches/rel-1-1/ppMerge/.cvsignore =================================================================== --- /branches/rel-1-1/ppMerge/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppMerge/.cvsignore (revision 12167) @@ -0,0 +1,12 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +compile +config.log +config.status +configure +depcomp +install-sh +missing +test Index: /branches/rel-1-1/ppMerge/Makefile.am =================================================================== --- /branches/rel-1-1/ppMerge/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppMerge/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = src + +CLEANFILES = *~ core core.* Index: /branches/rel-1-1/ppMerge/autogen.sh =================================================================== --- /branches/rel-1-1/ppMerge/autogen.sh (revision 12167) +++ /branches/rel-1-1/ppMerge/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ppMerge +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +#($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $LIBTOOlIZE installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" +# DIE=1 +#} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +#$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ppMerge/configure.ac =================================================================== --- /branches/rel-1-1/ppMerge/configure.ac (revision 12167) +++ /branches/rel-1-1/ppMerge/configure.ac (revision 12167) @@ -0,0 +1,30 @@ +AC_PREREQ(2.59) + +AC_INIT([ppMerge], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_INSTALL +dnl AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) +PKG_CHECK_MODULES([PSMODULE], [psmodules >= 1.0.0]) +PKG_CHECK_MODULES([PPSTATS], [ppStats >= 1.0.0]) + +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror -std=c99" + +AC_CONFIG_FILES([ + Makefile + src/Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/ppMerge/src/.cvsignore =================================================================== --- /branches/rel-1-1/ppMerge/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppMerge/src/.cvsignore (revision 12167) @@ -0,0 +1,7 @@ +.deps +Makefile +Makefile.in +ppMerge +config.h +config.h.in +stamp-h1 Index: /branches/rel-1-1/ppMerge/src/Makefile.am =================================================================== --- /branches/rel-1-1/ppMerge/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppMerge/src/Makefile.am (revision 12167) @@ -0,0 +1,35 @@ +bin_PROGRAMS = ppMerge + +ppMerge_CFLAGS = $(PPSTATS_CFLAGS) $(PSMODULE_CFLAGS) $(PSLIB_CFLAGS) +ppMerge_LDFLAGS = $(PPSTATS_LIBS) $(PSMODULE_LIBS) $(PSLIB_LIBS) -Wl,-Bdynamic + +ppMerge_SOURCES = \ + ppMerge.c \ + ppMergeCheckInputs.c \ + ppMergeCombine.c \ + ppMergeConfig.c \ + ppMergeData.c \ + ppMergeMask.c \ + ppMergeOptions.c \ + ppMergeScaleZero.c \ + ppMergeVersion.c + + +noinst_HEADERS = \ + ppMerge.h \ + ppMergeCheckInputs.h \ + ppMergeCombine.h \ + ppMergeConfig.h \ + ppMergeData.h \ + ppMergeMask.h \ + ppMergeOptions.h \ + ppMergeScaleZero.h \ + ppMergeVersion.h + +CLEANFILES = *~ + +clean-local: + -rm -f TAGS +# Tags for emacs +tags: + etags `find . -name \*.[ch] -print` Index: /branches/rel-1-1/ppMerge/src/ppMerge.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMerge.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMerge.c (revision 12167) @@ -0,0 +1,87 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeConfig.h" +#include "ppMergeData.h" +#include "ppMergeOptions.h" +#include "ppMergeCheckInputs.h" +#include "ppMergeCombine.h" +#include "ppMergeScaleZero.h" +#include "ppMergeMask.h" + +//#include "ppMem.h" + +// Yet to do: +// +// 1. Mask pixels with less than the minimum number of electrons +// 2. Sampling factor for background measurement +// 3. On/off pairs + +int main(int argc, char **argv) +{ + psLibInit(NULL); + psMemSetThreadSafety(false); // Turn off thread safety, for more + psTimerStart(TIMERNAME); + + // Parse the configuration and arguments + // Open the input image(s) + // Determine camera, format from header if not already defined + // Construct camera in preparation for reading + pmConfig *config = ppMergeConfig(argc, argv); + + // Set various tasks (define optional operations) + ppMergeOptions *options = ppMergeOptionsParse(config); + + // Check the inputs + ppMergeData *data = ppMergeCheckInputs(options, config); + if (!data) { + psError(PS_ERR_IO, false, "Not enough valid input files.\n"); + exit(EXIT_FAILURE); + } + + psImage *scale = NULL; // The scalings + psImage *zero = NULL; // The zeros + + if (options->mask) { + // Generate a mask + ppMergeMask(data, options, config); + } else { + // Measure the background in each image + ppMergeScaleZero(&scale, &zero, data, options, config); + + // Do the combination and write + ppMergeCombine(scale, zero, data, options, config); + } + + // Output the statistics + if (data->statsFile) { + psString statsOut = psMetadataConfigFormat(data->stats); // String to write out + fprintf(data->statsFile, "%s", statsOut); + psFree(statsOut); + } + +#if 0 + pmFPAPrint(stdout, data->out, true, true); +#endif + + // Cleaning up + psFree(data); + psFree(scale); + psFree(zero); + psFree(options); + psFree(config); + + pmConceptsDone(); + pmConfigDone(); + psLibFinalize(); + +// ppMemCheck(); + + return EXIT_SUCCESS; +} Index: /branches/rel-1-1/ppMerge/src/ppMerge.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMerge.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMerge.h (revision 12167) @@ -0,0 +1,7 @@ +#ifndef PP_MERGE_H +#define PP_MERGE_H + +#define TIMERNAME "ppMerge" +#define PPMERGE_RECIPE "PPMERGE" + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.c (revision 12167) @@ -0,0 +1,144 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeCheckInputs.h" +#include "ppMergeData.h" + +// Check input files to make sure everything's consistent +ppMergeData *ppMergeCheckInputs(ppMergeOptions *options, // Options + pmConfig *config // Configuration + ) +{ + ppMergeData *data = ppMergeDataAlloc(); // The data, to return + + // Output file + psString outName = psMetadataLookupStr(NULL, config->arguments, "OUTPUT"); // The output file name + assert(outName); // It should be there! + data->outFile = psFitsOpen(outName, "w"); // Output FITS file + if (!data->outFile) { + // There's no point in continuing if we can't open the output + psErrorStackPrint(stderr, "Can't open output image: %s\n", outName); + exit(EXIT_FAILURE); + } + + // Statistics file + psString statsName = psMetadataLookupStr(NULL, config->arguments, "-stats"); // Name for statistics file + if (statsName && strlen(statsName) > 0) { + data->statsFile = fopen(statsName, "w"); + if (!data->statsFile) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to open statistics file %s --- ignored.\n", + statsName); + } + } + + psArray *filenames = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); // The input file names + assert(filenames); + if (!data->in) { + data->in = psArrayAlloc(filenames->n); + } + if (!data->files) { + data->files = psArrayAlloc(filenames->n); + } + int numGood = 0; // Number of good files + for (int i = 0; i < filenames->n; i++) { + psString name = filenames->data[i]; // The name of the file + if (!name || strlen(name) == 0) { + continue; + } + psTrace("ppMerge", 1, "Checking input file %s....\n", name); + psFits *inFile = psFitsOpen(filenames->data[i], "r"); // The FITS file to read + if (!inFile) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to open input file %s --- ignored.\n", name); + // Kick it out + psFree(filenames->data[i]); + filenames->data[i] = NULL; + continue; + } + psMetadata *header = psFitsReadHeader(NULL, inFile); // The FITS (primary) header + data->files->data[i] = inFile; + + // The formats must be identical. The chief reason for this is so that we know what output format to + // use. I guess one could specify a different output format on the command line, but how do we + // generate a PHU for that? Perhaps we could revisit this restriction in the future (construct an + // FPAview from the specified camera format configuration, and use pmFPAAddSourceFromView), but for + // now it's less hassle just to limit the output format to be the input format. + if (!options->format) { + options->format = pmConfigCameraFormatFromHeader(config, header); + psFree(header); + if (!options->format) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to identify camera format for input file %s --- " + "ignored.\n", name); + // Kick it out + psFree(header); + data->in->data[i] = NULL; + continue; + } + } else { + bool valid = false; + if (!pmConfigValidateCameraFormat(&valid, options->format, header)) { + psError (PS_ERR_UNKNOWN, false, "Error in config scripts\n"); + exit (PS_EXIT_CONFIG_ERROR); + } + if (!valid) { + psLogMsg(__func__, PS_LOG_WARN, "Input file %s doesn't match camera format --- ignored.\n", name); + // Kick it out + psFree(header); + data->in->data[i] = NULL; + continue; + } + } + + data->in->data[i] = pmFPAConstruct(config->camera); + pmFPAview *view = pmFPAAddSourceFromHeader(data->in->data[i], header, options->format); + psFree(view); + + // Use the first valid input as the basis for the output --- including the header + if (!data->out) { + psTrace("ppMerge", 5, "Constructing output using %s as a template.\n", name); + data->out = pmFPAConstruct(config->camera); + pmFPAview *view = pmFPAAddSourceFromHeader(data->out, header, options->format); + psFree(view); + } + psFree(header); + + psTrace("ppMerge", 3, "%s checks out.\n", name); + numGood++; + } + + // Count the cells + int numCells = 0; // Number of cells in the output FPA + psArray *chips = data->out->chips; // Array of chips in output + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (!chip) { + continue; + } + psArray *cells = chip->cells; // Array of cells + for (int j = 0; j < cells->n; j++) { + pmCell *cell = cells->data[j]; + if (cell) { + numCells++; + } + } + } + data->numCells = numCells; + psTrace("ppMerge", 3, "Output has %d cells.\n", numCells); + + psTrace("ppMerge", 3, "We have %d good inputs.\n", numGood); + if (numGood > 1) { + return data; + } + + psFree(data); + return NULL; +} + + Index: /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeCheckInputs.h (revision 12167) @@ -0,0 +1,13 @@ +#ifndef PP_MERGE_CHECK_INPUTS_H +#define PP_MERGE_CHECK_INPUTS_H + +#include +#include "ppMergeOptions.h" +#include "ppMergeData.h" + +// Check input files to make sure everything's consistent +ppMergeData *ppMergeCheckInputs(ppMergeOptions *options, // Options + pmConfig *config // Configuration + ); + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeCombine.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeCombine.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeCombine.c (revision 12167) @@ -0,0 +1,335 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeData.h" +#include "ppMergeCombine.h" +#include "ppMergeVersion.h" + +#if 0 +static psMemId memId = 0; + +static FILE *dumpFile = NULL; + +static psMemId mbAlloc(psMemBlock *mb) +{ + if (!dumpFile) { + dumpFile = fopen("memBlocks.dat", "w"); + } + fprintf(dumpFile, "Alloc: %12lu\t%12zd\t%s:%d\n", mb->id, mb->userMemorySize, + mb->file, mb->lineno); + return 1; +} + +static void dumpDone(void) +{ + fclose(dumpFile); + exit(EXIT_FAILURE); +} + + +static void memDump(void) +{ + psMemBlock **leaks = NULL; + int numLeaks = psMemCheckLeaks(memId, &leaks, NULL, true); + FILE *memFile = fopen("mem.dat", "w"); + fprintf(memFile, "# MemBlock Size Source\n"); + for (int i = 0; i < numLeaks; i++) { + psMemBlock *mb = leaks[i]; + fprintf(memFile, "%12lu\t%12zd\t%s:%d\n", mb->id, mb->userMemorySize, + mb->file, mb->lineno); + } + fclose(memFile); + psFree(leaks); +} + +static void memCheck(void) +{ + return; + if (psTraceGetLevel("ppMerge") > 9) { + psMemBlock **leaks = NULL; + int numLeaks = psMemCheckLeaks(0, &leaks, NULL, true); + size_t largestSize = 0; + psMemId largest = 0; + size_t totalSize = 0; + for (int i = 0; i < numLeaks; i++) { + psMemBlock *mb = leaks[i]; + totalSize += mb->userMemorySize; + if (mb->userMemorySize > largestSize) { + largestSize = mb->userMemorySize; + largest = mb->id; + } + } + psFree(leaks); + psTrace("ppMerge", 0, "Memory in use: %zd\n", totalSize); + psTrace("ppMerge", 0, "Largest block: %ld\n", largest); + psTrace("ppMerge", 0, "sbrk(): %zd\n", sbrk(0)); + } + return; +} +#endif + + +// Combine the inputs +bool ppMergeCombine(psImage *scales, // Scales for each cell of each integration, or NULL + psImage *zeros, // Zeros for each cell of each integration, or NULL + ppMergeData *data, // Data + ppMergeOptions *options, // Options + pmConfig *config // Configuration + ) +{ + psArray *filenames = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); // The input file names + assert(filenames); // It should be here --- it's put here in ppMergeConfig + + // Sanity checks + assert(!options->scale || scales); + assert(!scales || (scales->type.type == PS_TYPE_F32 && + scales->numCols == data->numCells && + scales->numRows == filenames->n)); + assert(!options->zero || zeros); + assert(!zeros || (zeros->type.type == PS_TYPE_F32 && + zeros->numCols == data->numCells && + zeros->numRows == filenames->n)); + + // Iterate over the FPA + pmFPA *fpa = data->out; // Output FPA + pmFPAview *view = pmFPAviewAlloc(0);// View of FPA, for iteration + int cellNum = -1; // Cell number in the whole FPA + pmFPAWrite(data->out, data->outFile, config->database, true, false); // Write header only + pmChip *chip; // Chip of interest + psRandom *rng = NULL; // Random number generator; required for building a mask + pmHDU *lastHDU = NULL; // Last HDU to be updated + if (options->mask) { + rng = psRandomAlloc(PS_RANDOM_TAUS, 0); + } + while ((chip = pmFPAviewNextChip(view, fpa, 1))) { + pmChipWrite(chip, data->outFile, config->database, true, false); // Write header only + pmCell *cell; // Cell of interest + while ((cell = pmFPAviewNextCell(view, fpa, 1))) { + cellNum++; + pmCellWrite(cell, data->outFile, config->database, true); // Write header only + pmReadout *readout = pmReadoutAlloc(cell); // Output readout of interest + psArray *stack = psArrayAlloc(filenames->n); // Stack of readouts to combine + psVector *cellScales = NULL; // Scales for this cell + if (scales) { + cellScales = psImageCol(NULL, scales, cellNum); + } + psVector *cellZeros = NULL; // Zeros for this cell + if (zeros) { + cellZeros = psImageCol(NULL, zeros, cellNum); + } + + // Read bit by bit + int numRead; // Number of inputs read + int numScan = 0; + + // Put version metadata into header + pmHDU *hdu = pmHDUFromCell(cell); + if (hdu && hdu != lastHDU) { + if (!hdu->header) { + hdu->header = psMetadataAlloc(); + } + ppMergeVersionMetadata(hdu->header); + lastHDU = hdu; + } + + do { + numRead = 0; + for (int i = 0; i < filenames->n; i++) { + if (! filenames->data[i] || strlen(filenames->data[i]) == 0) { + continue; + } + psFits *fits = data->files->data[i]; // FITS file handle + if (!fits) { + continue; + } + + if (!stack->data[i]) { + pmFPA *fpaIn = data->in->data[i]; // Input FPA + pmChip *chipIn = fpaIn->chips->data[view->chip]; // Input chip + pmCell *cellIn = chipIn->cells->data[view->cell]; // Input cell + stack->data[i] = pmReadoutAlloc(cellIn); // Input readout + } + + // Only reading and writing the first readout in each cell (plane 0) + if (pmReadoutReadNext(stack->data[i], fits, 0, options->rows)) { + // If the mask value is set, we want to generate a mask + if (options->combine->maskVal) { + pmReadoutSetMask(stack->data[i]); + } + + // If we're combining with weights, we want to generate weights. + if (options->combine->weights) { + + // If it's a bias or dark, set the gain to zero: noise only contributed by read + if ((!options->zero && !options->scale) || options->darktime) { + pmReadoutSetWeight(stack->data[i], false); + } else { + pmReadoutSetWeight(stack->data[i], true); + } + } + + numRead++; + } else { + psTrace("ppMerge", 3, "Unable to read from file %d for chip %d, " + "cell %d, scan %d\n", i, view->chip, view->cell, numScan); + } + + } + + psTrace("ppMerge", 5, "Chip %d, cell %d, scan %d\n", view->chip, view->cell, numScan); + if (numRead > 0) { + + if (options->shutter) { + readout->image = pmShutterCorrectionMeasure(stack, options->shutterSize, + options->mean, options->stdev, + options->shutterIter, + options->shutterRej, + options->combine->maskVal); + } else { + pmReadoutCombine(readout, stack, cellZeros, cellScales, options->combine); + } + } + numScan++; + + } while (numRead > 0); + + psFree(stack); + + // Set the dark time for the output image, since we normalised + if (options->darktime) { + psMetadataItem *darkItem = psMetadataLookup(cell->concepts, "CELL.DARKTIME"); + darkItem->data.F32 = 1.0; + psMetadataItem *expItem = psMetadataLookup(cell->concepts, "CELL.EXPOSURE"); + expItem->data.F32 = 1.0; + } + + // Measure the fringes for this cell + // + // XXX Need to deal with multiple components: we will do this by building up the components + // Read the existing fringe measurements + // Use existing regions to measure fringe statistics + // Add the new fringe measurements to the existing fringe measurements. + // Write the appended fringe measurements. + // Read in the "output" file to get the existing components. + // Put the new readout into the cell after the existing readouts. + if (options->fringe && readout->image) { + pmFringeRegions *regions = pmFringeRegionsAlloc(options->fringeNum, options->fringeSize, + options->fringeSize, options->fringeSmoothX, + options->fringeSmoothY); // Fringe regions + pmFringeStats *fringe = pmFringeStatsMeasure(regions, readout, options->combine->maskVal); + psFree(regions); + if (!fringe) { + psError(PS_ERR_UNKNOWN, false, "Unable to measure fringe statistics.\n"); + psFree(readout); + return false; + } + + psArray *fringes = psArrayAlloc(1); // Array of fringes + fringes->data[0] = fringe; + + pmFringesFormat(cell, NULL, fringes); + psFree(fringes); // Drop reference + } + + // Add MD5 information for cell + if (readout->image) { + pmHDU *hdu = pmHDUFromCell(cell); // HDU that owns the cell + const char *chipName = psMetadataLookupStr(NULL, chip->concepts, "CHIP.NAME"); + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); + + psString headerName = NULL; // Header name for MD5 + psStringAppend(&headerName, "MD5_%s_%s", chipName, cellName); + + psVector *md5 = psImageMD5(readout->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, headerName, PS_META_REPLACE, + "Image MD5", md5string); + psFree(md5string); + psFree(headerName); + } + + psFree(readout); // Drop reference + + // Statistics on the merged cell + if (data->statsFile) { + data->stats = ppStats(data->stats, data->out, view, config); // Statistics for output FPA + } + + // We threw away the bias sections --- record this + psMetadataItem *biassecItem = psMetadataLookup(cell->concepts, "CELL.BIASSEC"); // Item of BIASSEC + psList *biassecList = biassecItem->data.V; // List of BIASSECs + while (psListRemove(biassecList, PS_LIST_TAIL)); // Removing all entries + + // Blow away the cell data + for (int i = 0; i < filenames->n; i++) { + pmFPA *fpaIn = data->in->data[i]; // Input FPA + pmChip *chipIn = fpaIn->chips->data[view->chip]; // Input chip + pmCell *cellIn = chipIn->cells->data[view->cell]; // Input cell + pmCellFreeData(cellIn); + } + + // Write the pixels + if (cell->hdu && !cell->hdu->blankPHU) { + psTrace("ppMerge", 5, "Writing out cell HDU.\n"); + pmCellWrite(cell, data->outFile, config->database, false); + if (options->fringe) { + pmCellWriteTable(data->outFile, cell, "FRINGE"); + } + + pmCellFreeData(cell); + } + } + + // Blow away the chip data + for (int i = 0; i < filenames->n; i++) { + pmFPA *fpaIn = data->in->data[i]; // Input FPA + pmChip *chipIn = fpaIn->chips->data[view->chip]; // Input chip + pmChipFreeData(chipIn); + } + + // Write the pixels + if (chip->hdu && !chip->hdu->blankPHU) { + psTrace("ppMerge", 5, "Writing out chip HDU.\n"); + pmChipWrite(chip, data->outFile, config->database, false, false); + if (options->fringe) { + pmChipWriteTable(data->outFile, chip, "FRINGE"); + } + + pmChipFreeData(chip); + } + } + + // Blow away the FPA data + for (int i = 0; i < filenames->n; i++) { + pmFPA *fpaIn = data->in->data[i]; // Input FPA + pmFPAFreeData(fpaIn); + } + + if (data->out->hdu && !data->out->hdu->blankPHU) { + // Write the pixels + psTrace("ppMerge", 5, "Writing out FPA HDU.\n"); + pmFPAWrite(data->out, data->outFile, config->database, false, false); + if (options->fringe) { + pmFPAWriteTable(data->outFile, fpa, "FRINGE"); + } + } + + pmFPAFreeData(data->out); + + psFree(view); + psFree(rng); + + return true; + +} Index: /branches/rel-1-1/ppMerge/src/ppMergeCombine.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeCombine.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeCombine.h (revision 12167) @@ -0,0 +1,18 @@ +#ifndef PP_MERGE_COMBINE_H +#define PP_MERGE_COMBINE_H + +#include +#include + +#include "ppMergeData.h" +#include "ppMergeOptions.h" + +// Combine readouts +bool ppMergeCombine(psImage *scales, // Scales for each cell of each integration, or NULL + psImage *zeros, // Zeros for each cell of each integration, or NULL + ppMergeData *data, // Data + ppMergeOptions *options, // Options + pmConfig *config // Configuration + ); + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeConfig.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeConfig.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeConfig.c (revision 12167) @@ -0,0 +1,86 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeConfig.h" + +#define DONT_USE_DB + +// Output usage information +static void usage(const char *programName, // Name of the program + pmConfig *config // Configuration (contains the arguments list) + ) +{ + printf("Merge multiple calibration frames into a master frame by stacking.\n\n" + "Usage:\n" + "\t%s OUTPUT.fits INPUT1.fits INPUT2.fits ...\n" + "\n", programName); + psArgumentHelp(config->arguments); + exit(EXIT_FAILURE); +} + +pmConfig *ppMergeConfig(int argc, char **argv) +{ + pmConfig *config = pmConfigRead(&argc, argv, PPMERGE_RECIPE); + // Load the site-wide configuration information + if (! config) { + psErrorStackPrint(stderr, "Can't find site configuration!\n"); + exit(EXIT_FAILURE); + } + + // Command-line arguments + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-type", 0, "Type of calibration frame", ""); + psMetadataAddBool(config->arguments, PS_LIST_TAIL, "-zero", 0, "Subtract background?", false); + psMetadataAddBool(config->arguments, PS_LIST_TAIL, "-scale", 0, "Scale by background?", false); + psMetadataAddBool(config->arguments, PS_LIST_TAIL, "-exptime", 0, "Scale by the exposure time?", false); + psMetadataAddS32(config->arguments, PS_LIST_TAIL, "-onoff", 0, "Number of on/off pairs", 0); + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "-stats", 0, "MDC file to hold statistics ", NULL); + + if (argc == 1) { + usage(argv[0], config); + } + + // Parse the arguments + if (! psArgumentParse(config->arguments, &argc, argv) || argc < 3) { + usage(argv[0], config); + } + + // Add the output image to the arguments list + psMetadataAddStr(config->arguments, PS_LIST_TAIL, "OUTPUT", 0, "Name of the output image", + argv[1]); + + // Everything remaining must be input files + if (argc - 2 <= 1) { + psErrorStackPrint(stderr, "No files to combine.\n"); + exit(EXIT_FAILURE); + } + psArray *files = psArrayAlloc(argc - 2); + for (int i = 2; i < argc; i++) { + files->data[i - 2] = psStringCopy(argv[i]); + } + psMetadataAddPtr(config->arguments, PS_LIST_TAIL, "INPUT", PS_DATA_ARRAY, + "Array of inputs images", files); + psFree(files); // Drop reference + +#ifndef DONT_USE_DB +#ifdef HAVE_PSDB + // Define database handle, if required + config->database = pmConfigDB(config); +#endif +#endif + + // Add concepts for scale and zero + psMetadataItem *scaleItem = psMetadataItemAllocF32("PPMERGE.SCALE", "Scaling for ppMerge", NAN); + psMetadataItem *zeroItem = psMetadataItemAllocF32("PPMERGE.ZERO", "Zero offset for ppMerge", NAN); + pmConceptRegister(scaleItem, NULL, NULL, PM_FPA_LEVEL_CELL); + pmConceptRegister(zeroItem, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(scaleItem); + psFree(zeroItem); + + return config; +} Index: /branches/rel-1-1/ppMerge/src/ppMergeConfig.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeConfig.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeConfig.h (revision 12167) @@ -0,0 +1,10 @@ +#ifndef PP_MERGE_CONFIG_H +#define PP_MERGE_CONFIG_H + +#include + +// Get the configuration information +pmConfig *ppMergeConfig(int argc, char **argv // The standard command-line parameters (but pointer to number) + ); + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeData.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeData.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeData.c (revision 12167) @@ -0,0 +1,50 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "ppMerge.h" +#include "ppMergeData.h" + +// Free function for ppMergeData +static void mergeDataFree(ppMergeData *data // Data to free + ) +{ + if (data->files) { + for (long i = 0; i < data->files->n; i++) { + psFitsClose(data->files->data[i]); + data->files->data[i] = NULL; + } + psFree(data->files); + } + psFree(data->in); + psFree(data->out); + if (data->outFile) { + psFitsClose(data->outFile); + data->outFile = NULL; + } + if (data->statsFile) { + fclose(data->statsFile); + data->statsFile = NULL; + } + psFree(data->stats); +} + +// Allocator for ppMergeData +ppMergeData *ppMergeDataAlloc(void) +{ + ppMergeData *data = psAlloc(sizeof(ppMergeData)); // The data, to return + psMemSetDeallocator(data, (psFreeFunc)mergeDataFree); + + data->numCells = 0; + data->files = NULL; + data->in = NULL; + data->out = NULL; + data->outFile = NULL; + data->stats = NULL; + data->statsFile = NULL; + + return data; +} Index: /branches/rel-1-1/ppMerge/src/ppMergeData.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeData.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeData.h (revision 12167) @@ -0,0 +1,23 @@ +#ifndef PP_MERGE_DATA_H +#define PP_MERGE_DATA_H + +#include +#include + +// Container for the data +typedef struct { + int numCells; // Number of (valid) cells in the FPA + psArray *files; // Input file pointers + psArray *in; // Input FPA structures + pmFPA *out; // Output FPA structure + psFits *outFile; // FITS file handle for output + psMetadata *stats; // Statistics on the combined image + FILE *statsFile; // File stream for statistics output +} ppMergeData; + + +// Allocator +ppMergeData *ppMergeDataAlloc(void); + + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.c.in =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.c.in (revision 12167) @@ -0,0 +1,26 @@ +/* + * The line + { PPMERGE_ERR_$X{ErrorCode}, "$X{ErrorDescription}"}, + * (without the Xs) + * will be replaced by values from errorCodes.dat + */ +#include "pslib.h" +#include "ppMergeErrorCodes.h" + +void ppMergeErrorRegister(void) +{ + static psErrorDescription errors[] = { + { PPMERGE_ERR_BASE, "First value we use; lower values belong to psLib" }, + { PPMERGE_ERR_${ErrorCode}, "${ErrorDescription}"}, + }; + static int nerror = PPMERGE_ERR_NERROR - PPMERGE_ERR_BASE; // number of values in enum + + for (int i = 0; i < nerror; i++) { + psErrorDescription *tmp = psAlloc(sizeof(psErrorDescription)); + p_psMemSetPersistent(tmp, true); + *tmp = errors[i]; + psErrorRegister(tmp, 1); + psFree(tmp); /* it's on the internal list */ + } + nerror = 0; // don't register more than once +} Index: /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.dat =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.dat (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.dat (revision 12167) @@ -0,0 +1,10 @@ +# +# This file is used to generate ppMergeErrorClasses.h +# +BASE = 700 First value we use; lower values belong to psLib +# these errors correspond to standard exit conditions +ARGUMENTS Incorrect arguments +SYS System error +CONFIG Problem in configure files +PROG Programming error +DATA invalid data Index: /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.h.in =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeErrorCodes.h.in (revision 12167) @@ -0,0 +1,18 @@ +#if !defined(PPMERGE_ERROR_CODES_H) +#define PPMERGE_ERROR_CODES_H +/* + * The line + * PPMERGE_ERR_$X{ErrorCode}, + * (without the X) + * + * will be replaced by values from errorCodes.dat + */ +typedef enum { + PPMERGE_ERR_BASE = 512, + PPMERGE_ERR_${ErrorCode}, + PPMERGE_ERR_NERROR +} ppMergeErrorCode; + +void ppMergeErrorRegister(void); + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeMask.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeMask.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeMask.c (revision 12167) @@ -0,0 +1,126 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeData.h" +#include "ppMergeMask.h" + + +// Generate a mask +bool ppMergeMask(ppMergeData *data, // Data + ppMergeOptions *options, // Options + pmConfig *config // Configuration + ) +{ + psArray *filenames = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); // The input file names + assert(filenames); // It should be here --- it's put here in ppMergeConfig + + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 0); // Random number generator + pmFPA *fpaOut = data->out; // Output FPA + + // Iterate over each file + for (int i = 0; i < filenames->n; i++) { + if (! filenames->data[i] || strlen(filenames->data[i]) == 0) { + continue; + } + psFits *fits = data->files->data[i]; // FITS file handle + if (!fits) { + continue; + } + psTrace("ppMerge", 3, "File %d: %s\n", i, (const char*)filenames->data[i]); + + pmFPA *fpaIn = data->in->data[i]; // Input FPA + pmFPAview *view = pmFPAviewAlloc(0); // View of FPA, for iteration + pmChip *chipIn; // Input chip of interest + while ((chipIn = pmFPAviewNextChip(view, fpaIn, 1))) { + pmCell *cellIn; // Input cell of interest + while ((cellIn = pmFPAviewNextCell(view, fpaIn, 1))) { + if (!pmCellRead(cellIn, fits, config->database)) { + continue; + } + if (cellIn->readouts->n == 0) { + continue; + } + + pmCell *cellOut = pmFPAviewThisCell(view, fpaOut); // Output cell + // Suspect pixels image + psImage *suspect = psMetadataLookupPtr(NULL, cellOut->analysis, "MASK.SUSPECT"); + bool first = suspect ? false : true; + + pmReadout *roIn; // Input readout of interest + while ((roIn = pmFPAviewNextReadout(view, fpaIn, 1))) { + if (!roIn->image) { + continue; + } + psTrace("ppMerge", 4, "Flagging suspect pixels in chip %d, cell %d, ro %d\n", + view->chip, view->cell, view->readout); + float frac = options->sample / (float)(roIn->image->numCols * roIn->image->numRows); + suspect = pmMaskFlagSuspectPixels(suspect, roIn, options->maskSuspect, + options->combine->maskVal, frac, rng); + } + + if (first) { + psMetadataAddImage(cellOut->analysis, PS_LIST_TAIL, "MASK.SUSPECT", 0, + "Suspect pixels", suspect); + psFree(suspect); + } + + pmCellFreeData(cellIn); + } + pmChipFreeData(chipIn); + } + pmFPAFreeData(fpaIn); + psFree(view); + } + psFree(rng); + + pmFPAview *view = pmFPAviewAlloc(0);// View of FPA, for iteration + pmFPAWriteMask(fpaOut, data->outFile, config->database, true, false); // Write header only + pmChip *chipOut; // Output chip of interest + while ((chipOut = pmFPAviewNextChip(view, fpaOut, 1))) { + pmChipWriteMask(chipOut, data->outFile, config->database, true, false); // Write header only + pmCell *cellOut; // Output cell of interest + while ((cellOut = pmFPAviewNextCell(view, fpaOut, 1))) { + pmCellWriteMask(cellOut, data->outFile, config->database, true); // Write header only + + psImage *suspect = psMetadataLookupPtr(NULL, cellOut->analysis, "MASK.SUSPECT"); + if (! suspect) { + continue; + } + + pmReadout *roOut = pmReadoutAlloc(cellOut); // Output readout + roOut->mask = pmMaskIdentifyBadPixels(suspect, options->maskBad, options->combine->maskVal); + psFree(roOut); // Drop reference + + if (cellOut->hdu && !cellOut->hdu->blankPHU) { + psTrace("ppMerge", 5, "Writing out cell HDU.\n"); + pmCellWriteMask(cellOut, data->outFile, config->database, false); + pmCellFreeData(cellOut); + } + } + + if (chipOut->hdu && !chipOut->hdu->blankPHU) { + psTrace("ppMerge", 5, "Writing out chip HDU.\n"); + pmChipWriteMask(chipOut, data->outFile, config->database, false, false); + pmChipFreeData(chipOut); + } + } + + if (fpaOut->hdu && !fpaOut->hdu->blankPHU) { + psTrace("ppMerge", 5, "Writing out FPA HDU.\n"); + pmFPAWriteMask(fpaOut, data->outFile, config->database, false, false); + } + pmFPAFreeData(fpaOut); + + psFree(view); + + return true; +} Index: /branches/rel-1-1/ppMerge/src/ppMergeMask.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeMask.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeMask.h (revision 12167) @@ -0,0 +1,15 @@ +#ifndef PP_MERGE_MASK +#define PP_MERGE_MASK + +#include +#include "ppMergeData.h" +#include "ppMergeOptions.h" + +// Generate a mask +bool ppMergeMask(ppMergeData *data, // Data + ppMergeOptions *options, // Options + pmConfig *config // Configuration + ); + + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeOptions.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeOptions.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeOptions.c (revision 12167) @@ -0,0 +1,249 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeOptions.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// ppMergeOptions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Free function +static void mergeOptionsFree(ppMergeOptions *options // Options to free + ) +{ + psFree(options->format); + psFree(options->combine); +} + +// Allocator +ppMergeOptions *ppMergeOptionsAlloc(void) +{ + ppMergeOptions *options = psAlloc(sizeof(ppMergeOptions)); // The options, to return + psMemSetDeallocator(options, (psFreeFunc)mergeOptionsFree); + + options->format = NULL; + options->rows = 0; + options->minElectrons = NAN; + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + options->sample = 1; + options->mean = PS_STAT_SAMPLE_MEDIAN; + options->stdev = PS_STAT_SAMPLE_STDEV; + options->fringeNum = 100; + options->fringeSize = 10; + options->fringeSmoothX = 5; + options->fringeSmoothY = 5; + options->shutterSize = 10; + options->shutterIter = 2; + options->shutterRej = 3.0; + options->maskSuspect = 5.0; + options->maskBad = 10.0; + options->onOff = 0; + options->combine = pmCombineParamsAlloc(PS_STAT_SAMPLE_MEAN); + options->combine->rej = 3.0; + options->combine->iter = 1; + options->combine->fracHigh = 0.0; + options->combine->fracLow = 0.0; + options->combine->nKeep = 1; + options->combine->maskVal = 0xff; + options->combine->weights = false; + + return options; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// ppMergeOptionsParse +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Parse a recipe option according to its type +#define OPTION_PARSE(OPTION,MD,NAME,TYPE) \ +{ \ + psMetadataItem *item = psMetadataLookup(MD, NAME); \ + if (item) { \ + OPTION = psMetadataItemParse##TYPE(item); \ + } else { \ + psWarning("Recipe option %s isn't specified; using default.\n", NAME); \ + } \ +} + +// Parse a statistic +static psStatsOptions parseStat(psMetadata *source, // Source of the statistics option + const char *name // Name of the statistics option + ) +{ + bool mdok = true; // Status of MD lookup + const char *stat = psMetadataLookupStr(&mdok, source, name); // The statistic string + if (!mdok || !stat || strlen(stat) == 0) { + return 0; + } + return psStatsOptionFromString(stat); +} + +// Parse the options +ppMergeOptions *ppMergeOptionsParse(pmConfig *config // Configuration + ) +{ + ppMergeOptions *options = ppMergeOptionsAlloc(); // The merge options + + // We need to work out the camera before we can get the recipe. Take the first input and inspect it. + if (!config->camera) { + psArray *filenames = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); // The input file names + psFits *inFile = psFitsOpen(filenames->data[0], "r"); // The FITS file to read + if (!inFile) { + psError(PS_ERR_IO, false, "Unable to open input file %s to determine camera.\n", + (char *)filenames->data[0]); + exit(EXIT_FAILURE); + } + psMetadata *header = psFitsReadHeader(NULL, inFile); // The FITS (primary) header + psFitsClose(inFile); + + options->format = pmConfigCameraFormatFromHeader(config, header); + psFree(header); + if (!options->format) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to identify camera format for input file %s\n", + (char *)filenames->data[0]); + exit(EXIT_FAILURE); + } + } + + // we must have the recipes by this point + assert (config->recipes); + + // Now we can read the recipe + bool mdok = true; // Status of MD lookup + psMetadata *recipe = psMetadataLookupMetadata(&mdok, config->recipes, PPMERGE_RECIPE); // Recipe information + if (!mdok || !recipe) { + psError(PS_ERR_IO, true, "Unable to find recipe %s", PPMERGE_RECIPE); + exit(EXIT_FAILURE); + } + + // First, deal with the recipe. These are parameters that will typically be constant for a camera. + OPTION_PARSE(options->rows, recipe, "ROWS", U16); + OPTION_PARSE(options->minElectrons, recipe, "ELECTRONS", F32); + OPTION_PARSE(options->sample, recipe, "SAMPLE", S32); + OPTION_PARSE(options->combine->rej, recipe, "REJ", F32); + OPTION_PARSE(options->combine->iter, recipe, "ITER", S32); + OPTION_PARSE(options->combine->fracHigh, recipe, "FRACHIGH", F32); + OPTION_PARSE(options->combine->fracLow, recipe, "FRACLOW", F32); + OPTION_PARSE(options->combine->nKeep, recipe, "NKEEP", S32); + OPTION_PARSE(options->combine->maskVal, recipe, "MASKVAL", S32); + OPTION_PARSE(options->combine->weights, recipe, "WEIGHTS", Bool); + OPTION_PARSE(options->fringeNum, recipe, "FRINGE.NUM", S32); + OPTION_PARSE(options->fringeSize, recipe, "FRINGE.SIZE", S32); + OPTION_PARSE(options->fringeSmoothX, recipe, "FRINGE.XSMOOTH", S32); + OPTION_PARSE(options->fringeSmoothY, recipe, "FRINGE.YSMOOTH", S32); + OPTION_PARSE(options->shutterSize, recipe, "SHUTTER.SIZE", S32); + OPTION_PARSE(options->shutterIter, recipe, "SHUTTER.ITER", S32); + OPTION_PARSE(options->shutterRej, recipe, "SHUTTER.REJECT", F32); + OPTION_PARSE(options->maskSuspect, recipe, "MASK.SUSPECT", F32); + OPTION_PARSE(options->maskBad, recipe, "MASK.BAD", F32); + + options->combine->combine = parseStat(recipe, "COMBINE"); + options->mean = parseStat(recipe, "MEAN"); + options->stdev = parseStat(recipe, "STDEV"); + + // Now the command-line options. These are parameters that depend on what type of frame is being combined + + // Set options based on the type of calibration frame + const char *type = psMetadataLookupStr(NULL, config->arguments, "-type"); // The type of calibration frame + if (strlen(type) > 0) { + if (strcasecmp(type, "BIAS") == 0) { + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "DARK") == 0) { + options->zero = false; + options->scale = false; + options->darktime = true; + options->fringe = false; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "FLAT") == 0) { + options->zero = false; + options->scale = true; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "SKYFLAT") == 0) { + options->zero = false; + options->scale = true; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "DOMEFLAT") == 0) { + options->zero = false; + options->scale = true; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "FRINGE") == 0) { + options->zero = true; + options->scale = true; + options->darktime = false; + options->fringe = true; + options->shutter = false; + options->mask = false; + } else if (strcasecmp(type, "SHUTTER") == 0) { + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = true; + options->mask = false; + options->rows = 0; // Read the whole image at once + } else if (strcasecmp(type, "MASK") == 0) { + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = true; + } else { + psLogMsg(__func__, PS_LOG_WARN, "Unrecognised image type: %s --- assuming BIAS.\n", type); + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } + } else { + psLogMsg(__func__, PS_LOG_WARN, "No calibration type specified; assuming BIAS.\n"); + options->zero = false; + options->scale = false; + options->darktime = false; + options->fringe = false; + options->shutter = false; + options->mask = false; + } + + +#if 0 + // Or you can set them individually + OPTION_PARSE(options->zero, config->arguments, "-zero", Bool); + OPTION_PARSE(options->scale, config->arguments, "-scale", Bool); + OPTION_PARSE(options->darktime, config->arguments, "-exptime", Bool); +#endif + + // Number of on/off images + OPTION_PARSE(options->onOff, config->arguments, "-onoff", S32); + + return options; +} Index: /branches/rel-1-1/ppMerge/src/ppMergeOptions.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeOptions.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeOptions.h (revision 12167) @@ -0,0 +1,52 @@ +#ifndef PP_MERGE_OPTIONS_H +#define PP_MERGE_OPTIONS_H + +#include +#include + +// Mode of on/off pairs; the value corresponds to how many images are in each set +typedef enum { + PP_ONOFF_ABBA = -1, // On/off pairs in the ABBA mode + PP_ONOFF_NONE = 0, // No on/off pairs + PP_ONOFF_ABAB = 1, // On/off pairs in the ABAB mode (one image each) + PP_ONOFF_AABB = 2, // On/off pairs, two images each + // And so on and so forth... just use a number beyond this +} ppOnOff; + +// Options for ppMerge +typedef struct { + psMetadata *format; // Camera format configuration + unsigned int rows; // Number of rows to read at once + float minElectrons; // Minimum number of electrons for useful signal + bool zero; // Subtract background before combining? + bool scale; // Scale by the background before combining? + bool darktime; // Normalise by the dark time (time since flush)? + bool fringe; // Make fringe measurements? + bool shutter; // Generate shutter correction? + bool mask; // Generate bad pixel mask? + unsigned int sample; // Sampling factor for measuring the background + psStatsOptions mean; // Statistic to use to measure the mean + psStatsOptions stdev; // Statistic to use to measure the stdev + int fringeNum; // Number of fringe regions per cell + int fringeSize; // Size of fringe regions + int fringeSmoothX; // Number of smoothing regions per cell, in x + int fringeSmoothY; // Number of smoothing regions per cell, in y + int shutterSize; // Size for shutter measurement regions + int shutterIter; // Number of iterations for shutter measurement + float shutterRej; // Rejection limit for shutter measurement + float maskSuspect; // Threshold for identifying suspect pixels + float maskBad; // Threshold for identifying bad pixels + ppOnOff onOff; // On/off pairs? + pmCombineParams *combine; // Combination parameters +} ppMergeOptions; + +// Allocator +ppMergeOptions *ppMergeOptionsAlloc(void); + + +// Parse the options for ppMerge +ppMergeOptions *ppMergeOptionsParse(pmConfig *config // Configuration + ); + + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.c (revision 12167) @@ -0,0 +1,325 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include + +#include "ppMerge.h" +#include "ppMergeScaleZero.h" + +// Get the scale and zero for each chip of each input +bool ppMergeScaleZero(psImage **scales, // The scales for each integration/cell + psImage **zeros, // The zeroes for each integration/cell + ppMergeData *data,// The data + const ppMergeOptions *options, // The options + const pmConfig *config // The configuration + ) +{ + assert(data); + assert(options); + assert(config); + + if (!options->scale && !options->zero && !options->darktime) { + return true; // We did everything we were asked for + } + + assert(config->camera); // Need the camera configuration + assert(config->arguments); // Need the list of files + + psArray *filenames = psMetadataLookupPtr(NULL, config->arguments, "INPUT"); // The input file names + assert(filenames); // It should be here --- it's put here in ppMergeConfig + + // Sanity checks + assert(!options->scale || scales); + assert(!scales || !*scales || ((*scales)->type.type == PS_TYPE_F32 && + (*scales)->numCols == data->numCells && + (*scales)->numRows == filenames->n)); + assert(!options->zero || zeros); + assert(!zeros || !*zeros || ((*zeros)->type.type == PS_TYPE_F32 && + (*zeros)->numCols == data->numCells && + (*zeros)->numRows == filenames->n)); + + // Allocate the outputs + if (options->scale) { + if (*scales) { + psFree(*scales); + } + *scales = psImageAlloc(data->numCells, filenames->n, PS_TYPE_F32); + } + if (options->zero) { + if (*zeros) { + psFree(*zeros); + } + *zeros = psImageAlloc(data->numCells, filenames->n, PS_TYPE_F32); + } + + bool fromConcepts = false; // Do we get the scale and zero points from the concepts + bool first = true; // Are we on the first cell (that sets the standard for the rest)? + bool done = false; // Are we done going through the list? + bool mdok = true; // Status of MD lookup + for (long i = 0; i < data->in->n && !done; i++) { + pmFPA *fpa = data->in->data[i]; // The FPA + if (!fpa) { + continue; + } + long cellNum = -1; // Number of the cell + psArray *chips = fpa->chips; // The array of chips + for (long j = 0; j < chips->n && !done; j++) { + pmChip *chip = chips->data[j]; // The chip + if (!chip) { + continue; + } + psArray *cells = chip->cells; // The array of cells + for (long k = 0; k < cells->n && !done; k++) { + pmCell *cell = cells->data[k]; // The cell + if (!cell) { + continue; + } + cellNum++; + + if (options->scale) { + float scale = psMetadataLookupF32(&mdok, cell->concepts, "PPMERGE.SCALE"); // The scale + if (mdok && !isnan(scale)) { + if (!first && !fromConcepts) { + psLogMsg(__func__, PS_LOG_WARN, "PPMERGE.SCALE and PPMERGE.ZERO have been set " + "for some, but not all cells --- we will re-measure it for all cells."); + done = true; + continue; + } + fromConcepts = true; + (*scales)->data.F32[i][cellNum] = scale; + psTrace("ppMerge", 9, "Scale for input %ld, chip %ld, cell %ld: %f\n", i, j, k, scale); + } else if (!first && fromConcepts) { + psLogMsg(__func__, PS_LOG_WARN, "PPMERGE.SCALE and PPMERGE.ZERO have been set " + "for some, but not all cells --- we will re-measure it for all cells."); + fromConcepts = false; + done = true; + continue; + } + } + + if (options->zero) { + float zero = psMetadataLookupF32(&mdok, cell->concepts, "PPMERGE.ZERO"); // The zero + if (mdok && !isnan(zero)) { + if (!first && !fromConcepts) { + psLogMsg(__func__, PS_LOG_WARN, "PPMERGE.SCALE and PPMERGE.ZERO have been set " + "for some, but not all cells --- we will re-measure it for all cells."); + done = true; + continue; + } + fromConcepts = true; + (*zeros)->data.F32[i][cellNum] = zero; + psTrace("ppMerge", 9, "Zero for input %ld, chip %ld, cell %ld: %f\n", i, j, k, zero); + } else if (!first && fromConcepts) { + psLogMsg(__func__, PS_LOG_WARN, "PPMERGE.SCALE and PPMERGE.ZERO have been set " + "for some, but not all cells --- we will re-measure it for all cells."); + fromConcepts = false; + done = true; + continue; + } + } + + first = false; + } + } + } + + if (fromConcepts) { + // We've already done everything we need to + return true; + } + + psImage *background = psImageAlloc(data->numCells, filenames->n, PS_TYPE_F32); // Background measurements + psImageInit(background, NAN); + psStats *bgStats = psStatsAlloc(options->mean); // Statistic to measure the background + psVector *gains = NULL; // The gains for each cell + psImage *darktime = NULL; // The dark time for each integration of each cell + if (options->scale) { + gains = psVectorAlloc(data->numCells, PS_TYPE_F32); + } + if (options->darktime) { + darktime = psImageAlloc(data->numCells, filenames->n, PS_TYPE_F32); + } + + bool status = true; // Status of getting the scale and zero --- did everything go right? + for (int i = 0; i < filenames->n; i++) { + psString name = filenames->data[i]; // The name of the file + if (!name || strlen(name) == 0) { + continue; + } + psTrace("ppMerge", 9, "Opening %s to get background...\n", name); + psFits *inFile = data->files->data[i]; // The FITS file to read + pmFPA *fpa = data->in->data[i]; // The FPA for this input + int cellNum = -1; // Number of the cell + psArray *chips = fpa->chips; // Array of chips + for (int j = 0; j < chips->n; j++) { + pmChip *chip = chips->data[j]; // The chip of interest + if (!chip) { + continue; + } + psArray *cells = chip->cells; // Array of cells + for (int k = 0; k < cells->n; k++) { + pmCell *cell = cells->data[k]; // The cell of interest + if (!cell) { + continue; + } + cellNum++; + + if (!pmCellReadHeader(cell, inFile)) { + continue; + } + + // Normalising by the exposure time + if (options->darktime) { + darktime->data.F32[i][cellNum] = psMetadataLookupF32(&mdok, cell->concepts, + "CELL.DARKTIME"); + if (!mdok || isnan(darktime->data.F32[i][cellNum])) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.DARKTIME for file %s chip %d cell %d is not " + "set.\n", name, j, k); + darktime->data.F32[i][cellNum] = NAN; + status = false; + } + } + + // Scaling by the background + if (options->scale || options->zero) { + if (!pmCellRead(cell, inFile, config->database)) { + // Nothing here + pmCellFreeData(cell); + continue; + } + + if (cell->readouts->n > 1) { + psLogMsg(__func__, PS_LOG_WARN, "File %s chip %d cell %d contains more than one " + "readout --- ignoring all but the first.\n", name, j, k); + status = false; + } + + pmReadout *readout = cell->readouts->data[0]; // The readout of interest + psImage *image = readout->image; // The pixels of interest + if (!image) { + pmCellFreeData(cell); + continue; + } + + // Get the gain + if (options->scale) { + bool mdok = true; // Status of MD lookup + gains->data.F32[cellNum] = psMetadataLookupF32(&mdok, cell->concepts, "CELL.GAIN"); + if (!mdok || isnan(gains->data.F32[cellNum])) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.GAIN for file %s chip %d cell %d is not " + "set.\n", name, j, k); + gains->data.F32[cellNum] = NAN; + status = false; + } + } + + // Get the background + int sampleSize = (image->numCols * image->numRows) / options->sample; // Size of sample + psVector *sample = psVectorAlloc(sampleSize, PS_TYPE_F32); // Sample of the image + psVector *sampleMask = NULL; // Mask for sample + if (readout->mask) { + sampleMask = psVectorAlloc(sampleSize, PS_TYPE_U8); + } + psImage *mask = readout->mask; // The mask image + for (long i = 0; i < sampleSize; i++) { + int j = i * options->sample; // Index into image + int x = j % image->numCols; // x index + int y = j / image->numCols; // y index + sample->data.F32[i] = image->data.F32[y][x]; + if (readout->mask) { + sampleMask->data.U8[i] = mask->data.U8[y][x]; + } + } + status = psVectorStats(bgStats, sample, sampleMask, NULL, options->combine->maskVal); + if (!status) { + psTrace("ppMerge", 3, "failed to get stats for for %s, cell %d is %f\n", name, cellNum, + background->data.F32[i][cellNum]); + psErrorClear(); + } + psFree(sample); + psFree(sampleMask); + background->data.F32[i][cellNum] = psStatsGetValue(bgStats, options->mean); + psTrace("ppMerge", 3, "Background for %s, cell %d is %f\n", name, cellNum, + background->data.F32[i][cellNum]); + } + + pmCellFreeData(cell); + } + pmChipFreeData(chip); + } + pmFPAFreeData(fpa); + } + psFree(bgStats); + + if (options->scale) { + // Need to normalize over the focal plane + if (psTraceGetLevel("ppMerge") > 9) { + for (int i = 0; i < gains->n; i++) { + psTrace("ppMerge", 10, "Gain for cell %d is %f\n", i, gains->data.F32[i]); + } + } + psVector *fluxes = NULL; // Solution to fluxes + if (!pmFlatNormalize(&fluxes, &gains, background)) { + psLogMsg(__func__, PS_LOG_WARN, "Normalisation failed to converge --- continuing anyway.\n"); + status = false; + } + psFree(gains); + + psImage *scalesDeref = *scales; // Dereference the pointer + + for (int i = 0; i < scalesDeref->numRows; i++) { + psF32 bg = fluxes->data.F32[i]; + for (int j = 0; j < scalesDeref->numCols; j++) { + scalesDeref->data.F32[i][j] = bg; + } + } + } + + if (options->darktime) { + if (!options->scale) { + // Copy over the exposure times + *scales = psImageCopy(*scales, darktime, PS_TYPE_F32); + } else { + *scales = (psImage*)psBinaryOp(*scales, *scales, "*", darktime); + } + } + + if (options->zero) { + if (!*zeros) { + // This is much faster than copying! + *zeros = psMemIncrRefCounter(background); + } else { + *zeros = psImageCopy(*zeros, background, PS_TYPE_F32); + } + } + + // Diagnostic stuff + if (scales && *scales && psTraceGetLevel("ppMerge") > 9) { + psImage *scalesDeref = *scales; // Dereference the pointer + for (int i = 0; i < scalesDeref->numRows; i++) { + for (int j = 0; j < scalesDeref->numCols; j++) { + psTrace("ppMerge", 9, "Scale for exposure %d, cell %d is: %f\n", i, j, + scalesDeref->data.F32[i][j]); + } + } + } + if (zeros && *zeros && psTraceGetLevel("ppMerge") > 9) { + psImage *zerosDeref = *zeros; // Dereference the pointer + for (int i = 0; i < zerosDeref->numRows; i++) { + for (int j = 0; j < zerosDeref->numCols; j++) { + psTrace("ppMerge", 9, "Zero for exposure %d, cell %d is: %f\n", i, j, + zerosDeref->data.F32[i][j]); + } + } + } + + psFree(background); + + return status; +} + Index: /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeScaleZero.h (revision 12167) @@ -0,0 +1,18 @@ +#ifndef PP_MERGE_SCALE_ZERO_H +#define PP_MERGE_SCALE_ZERO_H + +#include +#include + +#include "ppMergeData.h" +#include "ppMergeOptions.h" + +// Get the scale and zero for each chip of each input +bool ppMergeScaleZero(psImage **scales, // The scales for each integration/cell + psImage **zeros, // The zeroes for each integration/cell + ppMergeData *data,// The data + const ppMergeOptions *options, // The options + const pmConfig *config // The configuration + ); + +#endif Index: /branches/rel-1-1/ppMerge/src/ppMergeVersion.c =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeVersion.c (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeVersion.c (revision 12167) @@ -0,0 +1,60 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "ppMergeVersion.h" + +static const char *cvsTag = "$Name: not supported by cvs2svn $";// CVS tag name + +psString ppMergeVersion(void) +{ + psString version = NULL; // Version, to return + psStringAppend(&version, "%s-%s",PACKAGE_NAME,PACKAGE_VERSION); + return version; +} + +psString ppMergeVersionLong(void) +{ + psString version = ppMergeVersion(); // Version, to return + psString tag = psStringStripCVS(cvsTag, "Name"); // CVS tag + psStringAppend(&version, " (cvs tag %s) %s, %s", tag, __DATE__, __TIME__); + psFree(tag); + return version; +} + + +void ppMergeVersionMetadata(psMetadata *metadata) +{ + PS_ASSERT_METADATA_NON_NULL(metadata,); + + psString pslib = psLibVersionLong();// psLib version + psString psmodules = psModulesVersionLong(); // psModules version + psString ppStats = ppStatsVersionLong(); // ppStats version + psString ppMerge = ppMergeVersionLong(); // ppMerge version + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now + psString timeString = psTimeToISO(time); // The time in an ISO string + psFree(time); + psString head = NULL; // Head string + psStringAppend(&head, "ppMerge processing at %s. Component information:", timeString); + psFree(timeString); + + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, head, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, pslib, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, psmodules, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, ppStats, ""); + psMetadataAddStr(metadata, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, ppMerge, ""); + + psFree(head); + psFree(pslib); + psFree(psmodules); + psFree(ppStats); + psFree(ppMerge); + + return; +} Index: /branches/rel-1-1/ppMerge/src/ppMergeVersion.h =================================================================== --- /branches/rel-1-1/ppMerge/src/ppMergeVersion.h (revision 12167) +++ /branches/rel-1-1/ppMerge/src/ppMergeVersion.h (revision 12167) @@ -0,0 +1,14 @@ +#ifndef PP_MERGE_VERSION_H +#define PP_MERGE_VERSION_H + +/// Return short version information +psString ppMergeVersion(void); + +/// Return long version information +psString ppMergeVersionLong(void); + +/// Update the metadata with version information for all dependencies +void ppMergeVersionMetadata(psMetadata *metadata ///< Metadata to update with version information + ); + +#endif Index: /branches/rel-1-1/ppNorm/.cvsignore =================================================================== --- /branches/rel-1-1/ppNorm/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppNorm/.cvsignore (revision 12167) @@ -0,0 +1,12 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +compile +config.log +config.status +configure +depcomp +install-sh +missing +test Index: /branches/rel-1-1/ppNorm/Makefile.am =================================================================== --- /branches/rel-1-1/ppNorm/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppNorm/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = src + +CLEANFILES = *~ core core.* Index: /branches/rel-1-1/ppNorm/autogen.sh =================================================================== --- /branches/rel-1-1/ppNorm/autogen.sh (revision 12167) +++ /branches/rel-1-1/ppNorm/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ppNorm +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +#($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { +# echo +# echo "You must have $LIBTOOlIZE installed to compile $PROJECT." +# echo "Download the appropriate package for your distribution," +# echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" +# DIE=1 +#} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +#$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ppNorm/configure.ac =================================================================== --- /branches/rel-1-1/ppNorm/configure.ac (revision 12167) +++ /branches/rel-1-1/ppNorm/configure.ac (revision 12167) @@ -0,0 +1,29 @@ +AC_PREREQ(2.59) + +AC_INIT([ppNorm], [1.1.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_INSTALL +dnl AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) +PKG_CHECK_MODULES([PSMODULE], [psmodules >= 1.0.0]) + +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror -std=c99" + +AC_CONFIG_FILES([ + Makefile + src/Makefile +]) +AC_OUTPUT Index: /branches/rel-1-1/ppNorm/src/.cvsignore =================================================================== --- /branches/rel-1-1/ppNorm/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppNorm/src/.cvsignore (revision 12167) @@ -0,0 +1,7 @@ +Makefile +Makefile.in +ppNormCalc +.deps +config.h +config.h.in +stamp-h1 Index: /branches/rel-1-1/ppNorm/src/Makefile.am =================================================================== --- /branches/rel-1-1/ppNorm/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppNorm/src/Makefile.am (revision 12167) @@ -0,0 +1,17 @@ +bin_PROGRAMS = ppNormCalc + +ppNormCalc_CFLAGS = $(PSMODULE_CFLAGS) $(PSLIB_CFLAGS) +ppNormCalc_LDFLAGS = $(PSMODULE_LIBS) $(PSLIB_LIBS) -Wl,-Bdynamic + +ppNormCalc_SOURCES = \ + ppNormCalc.c + +noinst_HEADERS = + +CLEANFILES = *~ + +clean-local: + -rm -f TAGS +# Tags for emacs +tags: + etags `find . -name \*.[ch] -print` Index: /branches/rel-1-1/ppNorm/src/ppNormCalc.c =================================================================== --- /branches/rel-1-1/ppNorm/src/ppNormCalc.c (revision 12167) +++ /branches/rel-1-1/ppNorm/src/ppNormCalc.c (revision 12167) @@ -0,0 +1,149 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +void helpAndDie(const char *programName) +{ + printf("Calculate normalisation for flat fields.\n\n" + "Usage: %s [IN.mdc [OUT.mdc]]\n\n" + "where IN.mdc is a metadata config file containing the background\n" + " value for each component of each exposure;\n" + "and OUT.mdc is a metadata config file containing the output\n" + " normalisation factors.\n" + "\n", programName); + exit(EXIT_FAILURE); +} + + +int main(int argc, char *argv[]) +{ + psLibInit(NULL); + pmConfig *config = pmConfigRead(&argc, argv, NULL); + psFree(config); + + if (argc > 3 || + psArgumentGet(argc, argv, "-h") || + psArgumentGet(argc, argv, "-help") || + psArgumentGet(argc, argv, "--help") || + psArgumentGet(argc, argv, "-?")) { + helpAndDie(argv[0]); + } + + FILE *inFile = stdin; // Input file stream + FILE *outFile = stdout; // Output file stream + + if (argc >= 2) { + inFile = fopen(argv[1], "r"); + if (!inFile) { + psError(PS_ERR_IO, true, "Unable to open input file: %s\n\n", argv[1]); + helpAndDie(argv[0]); + } + } + if (argc == 3) { + outFile = fopen(argv[2], "w"); + if (!outFile) { + psError(PS_ERR_IO, true, "Unable to open output file: %s\n\n", argv[2]); + helpAndDie(argv[0]); + } + } + + psString inputMDC = psSlurpFile(inFile); // Input metadata config stuff + if (argc >= 2) { + fclose(inFile); + } + + psU32 badLines = 0; // Number of bad lines + psMetadata *exposures = psMetadataConfigParse(NULL, &badLines, inputMDC, false); // Exposure statistics + if (badLines > 0) { + psWarning("%d bad lines found when reading input\n", badLines); + } + + // Get a list of all the components + psMetadata *components = psMetadataAlloc(); // Components of the exposures + psMetadataIterator *expIter = psMetadataIteratorAlloc(exposures, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *expItem; // Item from iteration + while ((expItem = psMetadataGetAndIncrement(expIter))) { + if (expItem->type != PS_DATA_METADATA) { + psLogMsg("ppNormCalc", PS_LOG_WARN, + "Metadata item %s is not of type METADATA --- ignored.\n", + expItem->name); + continue; + } + + // Inspect each component for this exposure; add it if we don't know about it + psMetadata *comps = expItem->data.V; // The components + psMetadataIterator *compsIter = psMetadataIteratorAlloc(comps, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *compsItem; // Item from iteration + while ((compsItem = psMetadataGetAndIncrement(compsIter))) { + if (compsItem->type != PS_TYPE_F32) { + psLogMsg("ppNormCalc", PS_LOG_WARN, + "Component %s within exposure %s is not of type F32 --- ignored.\n", + compsItem->name, expItem->name); + continue; + } + if (!psMetadataLookup(components, compsItem->name)) { + psMetadataAddBool(components, PS_LIST_TAIL, compsItem->name, 0, NULL, true); + } + } + psFree(compsIter); + } + + // Convert to a matrix + int numComps = psListLength(components->list); // Number of components + int numExps = psListLength(exposures->list); // Number of exposures + psImage *matrix = psImageAlloc(numComps, numExps, PS_TYPE_F32); // Matrix of backgrounds + psMetadataIteratorSet(expIter, PS_LIST_HEAD); + for (int expNum = 0; (expItem = psMetadataGetAndIncrement(expIter)); expNum++) { + if (expItem->type != PS_DATA_METADATA) { + continue; + } + psMetadata *comps = expItem->data.V; // The components + psMetadataIterator *compsIter = psMetadataIteratorAlloc(components, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *compsItem; // Item from iteration + for (int compNum = 0; (compsItem = psMetadataGetAndIncrement(compsIter)); compNum++) { + matrix->data.F32[expNum][compNum] = psMetadataLookupF32(NULL, comps, compsItem->name); + } + psFree(compsIter); + } + psFree(expIter); + + // Do the normalisation + psVector *gains = psVectorAlloc(numComps, PS_TYPE_F32); // Vector of gains for each component + psVectorInit(gains, 100.0); + if (!pmFlatNormalize(NULL, &gains, matrix)) { + psLogMsg("ppNormCalc", PS_LOG_ERROR, "Normalisation didn't converge.\n"); + exit(EXIT_FAILURE); + } + psFree(matrix); + + + // Output a MDC format to stdout + psMetadata *outputMD = psMetadataAlloc(); // Output metadata + psMetadataIterator *compsIter = psMetadataIteratorAlloc(components, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *compsItem; // Item from iteration + for (int compNum = 0; (compsItem = psMetadataGetAndIncrement(compsIter)); compNum++) { + psMetadataAddF32(outputMD, PS_LIST_TAIL, compsItem->name, 0, NULL, gains->data.F32[compNum]); + } + psFree(compsIter); + psString outputString = psMetadataConfigFormat(outputMD); + fprintf(outFile, "%s", outputString); + psFree(outputString); + psFree(outputMD); + if (argc == 3) { + fclose(outFile); + } + + // Clean up + psFree(gains); + psFree(components); + psFree(exposures); + + pmConfigDone(); + psLibFinalize(); + + return EXIT_SUCCESS; +} Index: /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.c.in =================================================================== --- /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.c.in (revision 12167) @@ -0,0 +1,26 @@ +/* + * The line + { PPNORM_ERR_$X{ErrorCode}, "$X{ErrorDescription}"}, + * (without the Xs) + * will be replaced by values from errorCodes.dat + */ +#include "pslib.h" +#include "ppNormErrorCodes.h" + +void ppNormErrorRegister(void) +{ + static psErrorDescription errors[] = { + { PPNORM_ERR_BASE, "First value we use; lower values belong to psLib" }, + { PPNORM_ERR_${ErrorCode}, "${ErrorDescription}"}, + }; + static int nerror = PPNORM_ERR_NERROR - PPNORM_ERR_BASE; // number of values in enum + + for (int i = 0; i < nerror; i++) { + psErrorDescription *tmp = psAlloc(sizeof(psErrorDescription)); + p_psMemSetPersistent(tmp, true); + *tmp = errors[i]; + psErrorRegister(tmp, 1); + psFree(tmp); /* it's on the internal list */ + } + nerror = 0; // don't register more than once +} Index: /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.dat =================================================================== --- /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.dat (revision 12167) +++ /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.dat (revision 12167) @@ -0,0 +1,10 @@ +# +# This file is used to generate ppNormErrorClasses.h +# +BASE = 600 First value we use; lower values belong to psLib +# these errors correspond to standard exit conditions +ARGUMENTS Incorrect arguments +SYS System error +CONFIG Problem in configure files +PROG Programming error +DATA invalid data Index: /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.h.in =================================================================== --- /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/ppNorm/src/ppNormErrorCodes.h.in (revision 12167) @@ -0,0 +1,18 @@ +#if !defined(PPNORM_ERROR_CODES_H) +#define PPNORM_ERROR_CODES_H +/* + * The line + * PPNORM_ERR_$X{ErrorCode}, + * (without the X) + * + * will be replaced by values from errorCodes.dat + */ +typedef enum { + PPNORM_ERR_BASE = 512, + PPNORM_ERR_${ErrorCode}, + PPNORM_ERR_NERROR +} ppNormErrorCode; + +void ppNormErrorRegister(void); + +#endif Index: /branches/rel-1-1/ppStats/.cvsignore =================================================================== --- /branches/rel-1-1/ppStats/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppStats/.cvsignore (revision 12167) @@ -0,0 +1,16 @@ +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +compile +config.log +config.status +configure +depcomp +install-sh +missing +config.guess +config.sub +libtool +ltmain.sh +ppStats.pc Index: /branches/rel-1-1/ppStats/Makefile.am =================================================================== --- /branches/rel-1-1/ppStats/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppStats/Makefile.am (revision 12167) @@ -0,0 +1,9 @@ +SUBDIRS = src + +CLEANFILES = *~ core core.* + +pkgconfigdir = $(libdir)/pkgconfig +pkgconfig_DATA= ppStats.pc + +EXTRA_DIST = \ + ppStats.pc.in Index: /branches/rel-1-1/ppStats/autogen.sh =================================================================== --- /branches/rel-1-1/ppStats/autogen.sh (revision 12167) +++ /branches/rel-1-1/ppStats/autogen.sh (revision 12167) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=ppStats +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOlIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/ppStats/configure.ac =================================================================== --- /branches/rel-1-1/ppStats/configure.ac (revision 12167) +++ /branches/rel-1-1/ppStats/configure.ac (revision 12167) @@ -0,0 +1,30 @@ +AC_PREREQ(2.59) + +AC_INIT([ppStats], [1.1.1], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_INSTALL +AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) +PKG_CHECK_MODULES([PSMODULE], [psmodules >= 1.0.0]) + +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror -std=c99" + +AC_CONFIG_FILES([ + Makefile + src/Makefile + ppStats.pc +]) +AC_OUTPUT Index: /branches/rel-1-1/ppStats/ppStats.pc.in =================================================================== --- /branches/rel-1-1/ppStats/ppStats.pc.in (revision 12167) +++ /branches/rel-1-1/ppStats/ppStats.pc.in (revision 12167) @@ -0,0 +1,11 @@ +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@ + +Name: libppStats +Description: Pan-STARRS Image Statistics +Version: @VERSION@ +Requires: pslib psmodules +Libs: -L${libdir} -lppStats +Cflags: -I${includedir} Index: /branches/rel-1-1/ppStats/src/.cvsignore =================================================================== --- /branches/rel-1-1/ppStats/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/ppStats/src/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +Makefile +Makefile.in +.libs +*.lo +*.la +ppStats +config.h +config.h.in +stamp-h1 Index: /branches/rel-1-1/ppStats/src/Makefile.am =================================================================== --- /branches/rel-1-1/ppStats/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/ppStats/src/Makefile.am (revision 12167) @@ -0,0 +1,41 @@ +lib_LTLIBRARIES = libppStats.la +libppStats_la_CPPFLAGS = $(PSMODULE_CFLAGS) $(PSLIB_CFLAGS) + +bin_PROGRAMS = ppStats + +ppStats_CFLAGS = $(PSMODULE_CFLAGS) $(PSLIB_CFLAGS) +ppStats_LDFLAGS = $(PSMODULE_LIBS) $(PSLIB_LIBS) -Wl,-Bdynamic +ppStats_LDADD = libppStats.la + +libppStats_la_SOURCES = \ + ppStats.c \ + ppStatsData.c \ + ppStatsLoop.c \ + ppStatsSetupFromRecipe.c \ + ppStatsVersion.c + +ppStats_SOURCES = \ + ppStatsData.c \ + ppStatsLoop.c \ + ppStatsSetupFromArgs.c \ + ppStatsStandAlone.c \ + ppStatsVersion.c + +include_HEADERS = \ + ppStats.h \ + ppStatsData.h \ + ppStatsLoop.h \ + ppStatsSetupFromRecipe.h \ + ppStatsVersion.h + +noinst_HEADERS = \ + ppStats.h \ + ppStatsSetupFromArgs.h + +CLEANFILES = *~ + +clean-local: + -rm -f TAGS +# Tags for emacs +tags: + etags `find . -name \*.[ch] -print` Index: /branches/rel-1-1/ppStats/src/ppStats.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStats.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStats.c (revision 12167) @@ -0,0 +1,36 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "ppStats.h" + +psMetadata *ppStats(psMetadata *out, // Output metadata + pmFPA *fpa, // FPA for which to get statistics + pmFPAview *view, // View for analysis + pmConfig *config // Configuration + ) +{ + // Get the options, open the files + ppStatsData *data = ppStatsSetupFromRecipe(NULL, config); + + if (data->fpa) { + psFree(data->fpa); + } + data->fpa = psMemIncrRefCounter(fpa); + + if (data->view) { + psFree(data->view); + } + data->view = psMemIncrRefCounter(view); + + // Go through the FPA and do the hard work + out = ppStatsLoop(out, data, config); + + psFree(data); + + return out; +} Index: /branches/rel-1-1/ppStats/src/ppStats.config =================================================================== --- /branches/rel-1-1/ppStats/src/ppStats.config (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStats.config (revision 12167) @@ -0,0 +1,20 @@ +### Example ppStats recipe + +MULTI HEADERS # May specify multiple HEADERS +HEADERS STR HEADER1,HEADER2 # Read these headers +HEADERS STR HEADER3 # Read these headers too +MULTI STATS # May specify multiple STATS +STATS STR SAMPLE_MEAN,SAMPLE_STDEV # Calculate these statistics +STATS STR ROBUST_MEDIAN # Calculate these statistics too + +SAMPLE F32 0.1 # Fraction of cell to sample + +MULTI CHIPS # May specify multiple CHIPS +CHIPS STR chip00, chip01 # Look at these chips +CHIPS STR chip22 # Look at this chip too + +MULTI CELLS # May specify multiple CELLS +CELLS STR LeftCell,RightCell # Look at these cells +CELLS STR UpsideDownCell # Look at this cell too + +MASKVAL U8 0xff Index: /branches/rel-1-1/ppStats/src/ppStats.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStats.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStats.h (revision 12167) @@ -0,0 +1,20 @@ +#ifndef PP_STATS_H +#define PP_STATS_H + +#define PPSTATS_RECIPE "PPSTATS" + +#include + +#include "ppStatsData.h" +#include "ppStatsSetupFromRecipe.h" +#include "ppStatsLoop.h" +#include "ppStatsVersion.h" + +// Perform the ppStats steps +psMetadata *ppStats(psMetadata *out, // Output metadata + pmFPA *fpa, // FPA for which to get statistics + pmFPAview *view, // View for analysis + pmConfig *config // Configuration + ); + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsData.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsData.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsData.c (revision 12167) @@ -0,0 +1,51 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "ppStatsData.h" + +static void statsDataFree(ppStatsData *data // Data to free + ) +{ + if (data->fits) { + psFitsClose(data->fits); + data->fits = NULL; + } + psFree(data->fpa); + psFree(data->view); + psFree(data->headers); + psFree(data->concepts); + psFree(data->stats); + + psFree(data->chips); + psFree(data->cells); + + return; +} + + +ppStatsData *ppStatsDataAlloc(void) +{ + ppStatsData *data = psAlloc(sizeof(ppStatsData)); // Newly allocated data + psMemSetDeallocator(data, (psFreeFunc)statsDataFree); + + data->fits = NULL; + data->fpa = NULL; + data->view = NULL; + + data->headers = psListAlloc(NULL); + data->concepts = psListAlloc(NULL); + data->stats = psStatsAlloc(0); + data->doStats = false; + + data->sample = 0; + data->maskVal = 0; + data->chips = psListAlloc(NULL); + data->cells = psListAlloc(NULL); + + return data; +} + Index: /branches/rel-1-1/ppStats/src/ppStatsData.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsData.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsData.h (revision 12167) @@ -0,0 +1,27 @@ +#ifndef PP_STATS_DATA_H +#define PP_STATS_DATA_H + +#include +#include + +typedef struct { + // Inputs + psFits *fits; // Input file handle + pmFPA *fpa; // FPA to analyse + pmFPAview *view; // View to analyse + // Stuff to output + psStats *stats; // Statistics to calculate + bool doStats; // Do statistics? + psList *headers; // Headers to read + psList *concepts; // Concepts to read + // Options for input data + float sample; // Fraction of cell to sample for statistics + psMaskType maskVal; // Mask value for images + psList *chips; // Chips to look at + psList *cells; // Cells to look at +} ppStatsData; + +// Allocator +ppStatsData *ppStatsDataAlloc(void); + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.c.in =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.c.in (revision 12167) @@ -0,0 +1,26 @@ +/* + * The line + { PPSTATS_ERR_$X{ErrorCode}, "$X{ErrorDescription}"}, + * (without the Xs) + * will be replaced by values from errorCodes.dat + */ +#include "pslib.h" +#include "ppStatsErrorCodes.h" + +void ppStatsErrorRegister(void) +{ + static psErrorDescription errors[] = { + { PPSTATS_ERR_BASE, "First value we use; lower values belong to psLib" }, + { PPSTATS_ERR_${ErrorCode}, "${ErrorDescription}"}, + }; + static int nerror = PPSTATS_ERR_NERROR - PPSTATS_ERR_BASE; // number of values in enum + + for (int i = 0; i < nerror; i++) { + psErrorDescription *tmp = psAlloc(sizeof(psErrorDescription)); + p_psMemSetPersistent(tmp, true); + *tmp = errors[i]; + psErrorRegister(tmp, 1); + psFree(tmp); /* it's on the internal list */ + } + nerror = 0; // don't register more than once +} Index: /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.dat =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.dat (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.dat (revision 12167) @@ -0,0 +1,10 @@ +# +# This file is used to generate ppStatsErrorClasses.h +# +BASE = 400 First value we use; lower values belong to psLib +# these errors correspond to standard exit conditions +ARGUMENTS Incorrect arguments +SYS System error +CONFIG Problem in configure files +PROG Programming error +DATA invalid data Index: /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.h.in =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsErrorCodes.h.in (revision 12167) @@ -0,0 +1,18 @@ +#if !defined(PPSTATS_ERROR_CODES_H) +#define PPSTATS_ERROR_CODES_H +/* + * The line + * PPSTATS_ERR_$X{ErrorCode}, + * (without the X) + * + * will be replaced by values from errorCodes.dat + */ +typedef enum { + PPSTATS_ERR_BASE = 512, + PPSTATS_ERR_${ErrorCode}, + PPSTATS_ERR_NERROR +} ppStatsErrorCode; + +void ppStatsErrorRegister(void); + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsLoop.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsLoop.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsLoop.c (revision 12167) @@ -0,0 +1,339 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include + +#include "ppStats.h" +#include "ppStatsLoop.h" + + +static void getMetadata(psMetadata *target, // Target for metadata + psMetadata *source, // Source for metadata + psList *list // List containing keywords + ) +{ + psListIterator *iterator = psListIteratorAlloc(list, PS_LIST_HEAD, false); // Iterator + psString name; // Name from iteration + while ((name = psListGetAndIncrement(iterator))) { + psMetadataItem *item = psMetadataLookup(source, name); // Item of interest, or NULL + if (item) { + psMetadataAddItem(target, item, PS_LIST_TAIL, 0); + } + } + psFree(iterator); + return; +} + +static bool doThis(psList *toDoList, // List of things to do + const char *this // The name of "this" + ) +{ + if (psListLength(toDoList) == 0) { + // No list --- do everything + return true; + } + + psListIterator *iterator = psListIteratorAlloc(toDoList, PS_LIST_HEAD, false); // Iterator + psString test; // Test string, from iteration + while ((test = psListGetAndIncrement(iterator))) { + if (strcmp(this, test) == 0) { + // It's in the list --- do it + psFree(iterator); + return true; + } + } + psFree(iterator); + // Couldn't find it --- don't do it + return false; +} + +static void addToHierarchy(psMetadata *source, // Source to add + psMetadata *target, // Target to which to add + const char *name, // Name of source + const char *comment // Comment for source + ) +{ + if (psListLength(source->list) > 0 && !psMetadataLookup(target, name)) { + psMetadataAdd(target, PS_LIST_TAIL, name, PS_DATA_METADATA, + comment, source); + } + psFree(source); // Drop reference + return; +} + + +static void cellStats(psMetadata *chipResults, // Metadata holding the chip results + pmCell *cell, // Cell for which to get statistics + psFits *fits, // FITS file handle + ppStatsData *data,// The data + const pmConfig *config // Configuration + ) +{ + assert(chipResults); + assert(cell); + assert(data); + assert(config); + + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); // Name of cell + + // Check to see if this is a cell of interest + if (!doThis(data->cells, cellName)) { + return; + } + + // Cell-level results + bool mdok; // Status of MD lookup + psMetadata *cellResults = psMemIncrRefCounter(psMetadataLookupMetadata(&mdok, chipResults, cellName)); + if (!mdok || !cellResults) { + cellResults = psMetadataAlloc(); + } + + if (psListLength(data->headers) > 0 && cell->hdu) { + if (fits && !pmCellReadHeader(cell, fits)) { + goto cellDone; + } + pmHDU *hdu = cell->hdu; // HDU for headers + getMetadata(cellResults, hdu->header, data->headers); + } + if (psListLength(data->concepts) > 0) { + if (fits && !pmCellReadHeader(cell, fits)) { + goto cellDone; + } + pmConceptsReadCell(cell, PM_CONCEPT_SOURCE_ALL, false, config->database); + getMetadata(cellResults, cell->concepts, data->concepts); + } + + if (!data->doStats) { + // Nothing further to do --- don't want to waste our time reading the data + if (psListLength(cellResults->list) > 0) { + psMetadataAdd(chipResults, PS_LIST_TAIL, cellName, PS_DATA_METADATA, + "Results for cell", cellResults); + } + goto cellDone; + } + + pmHDU *hdu = pmHDUFromCell(cell); // HDU for cell + if (!hdu || hdu->blankPHU) { + goto cellDone; + } + + if (fits && !pmCellRead(cell, fits, config->database)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to read cell %s\n", cellName); + goto cellDone; + } + + psArray *readouts = cell->readouts; // Array of component readouts + if (readouts->n == 0) { + goto cellDone; + } + if (readouts->n > 1) { + psLogMsg(__func__, PS_LOG_WARN, "Multiple readouts (%ld) present in cell %s --- " + "using only the first.\n", readouts->n, cellName); + } + pmReadout *readout = readouts->data[0]; // The readout of interest + if (!readout->image) { + psLogMsg(__func__, PS_LOG_WARN, "No image associated with readout in cell %s --- " + "ignored.\n", cellName); + goto cellDone; + } + + // Do the statistics + if (data->sample <= 0.0) { + if (!psImageStats(data->stats, readout->image, readout->mask, data->maskVal)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to perform statistics on cell %s --- " + "ignored.\n", cellName); + goto cellDone; + } + } else { + // Apply sampling + psImage *image = readout->image; // The image of interest + psImage *mask = readout->mask; // The mask image + int numSamples = data->sample * image->numCols * image->numRows; // Number of samples + int sampleSpace = 1.0 / data->sample; // Space between samples + psVector *sampleValues = psVectorAlloc(numSamples, PS_TYPE_F32); // Vector of samples + psVector *sampleMask = NULL; // Corresponding mask + if (mask) { + sampleMask = psVectorAlloc(numSamples, PS_TYPE_U8); + } + for (int i = 0; i < numSamples; i++) { + int j = i * sampleSpace; + int y = j / image->numCols; + int x = j % image->numCols; + sampleValues->data.F32[i] = image->data.F32[y][x]; + if (mask) { + sampleMask->data.U8[i] = mask->data.U8[y][x]; + } + } + if (!psVectorStats(data->stats, sampleValues, NULL, sampleMask, data->maskVal)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to perform statistics on cell %s --- " + "ignored.\n", cellName); + psFree(sampleValues); + psFree(sampleMask); + goto cellDone; + } + psFree(sampleValues); + psFree(sampleMask); + } + +#define WRITE_STAT(SYMBOL, NAME, SOURCE) \ + if (data->stats->options & SYMBOL) { \ + psMetadataAddF32(cellResults, PS_LIST_TAIL, NAME, 0, NULL, data->stats->SOURCE); \ + } + + WRITE_STAT(PS_STAT_SAMPLE_MEAN, "SAMPLE_MEAN", sampleMean); + WRITE_STAT(PS_STAT_SAMPLE_MEDIAN, "SAMPLE_MEDIAN", sampleMedian); + WRITE_STAT(PS_STAT_SAMPLE_STDEV, "SAMPLE_STDEV", sampleStdev); + WRITE_STAT(PS_STAT_SAMPLE_QUARTILE, "SAMPLE_LQ", sampleLQ); + WRITE_STAT(PS_STAT_SAMPLE_QUARTILE, "SAMPLE_UQ", sampleUQ); + WRITE_STAT(PS_STAT_ROBUST_MEDIAN, "ROBUST_MEDIAN", robustMedian); + WRITE_STAT(PS_STAT_ROBUST_STDEV, "ROBUST_STDEV", robustStdev); + WRITE_STAT(PS_STAT_ROBUST_QUARTILE, "ROBUST_LQ", robustLQ); + WRITE_STAT(PS_STAT_ROBUST_QUARTILE, "ROBUST_UQ", robustUQ); + WRITE_STAT(PS_STAT_ROBUST_QUARTILE, "ROBUST_N50", robustN50); + WRITE_STAT(PS_STAT_FITTED_MEAN, "FITTED_MEAN", fittedMean); + WRITE_STAT(PS_STAT_FITTED_STDEV, "FITTED_STDEV", fittedStdev); + WRITE_STAT(PS_STAT_CLIPPED_MEAN, "CLIPPED_MEAN", clippedMean); + WRITE_STAT(PS_STAT_CLIPPED_STDEV, "CLIPPED_STDEV", clippedStdev); + +cellDone: + // Add the cell results to the chip + addToHierarchy(cellResults, chipResults, cellName, "Results for cell"); + if (fits) { + pmCellFreeData(cell); + } + return; +} + +static bool chipStats(psMetadata *fpaResults, // Metadata holding the fpa results + pmChip *chip, // Chip for which to get statistics + psFits *fits, // FITS file handle + pmFPAview *view, // View for analysis + ppStatsData *data,// The data + const pmConfig *config // Configuration + ) +{ + assert(fpaResults); + assert(chip); + assert(view); + assert(data); + assert(config); + + const char *chipName = psMetadataLookupStr(NULL, chip->concepts, "CHIP.NAME"); // Name of chip + + // Check to see if this is a chip of interest + if (!doThis(data->chips, chipName)) { + return true; + } + + psArray *cells = chip->cells; // Array of cells + if (view->cell >= cells->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Desired cell view (%d) doesn't match " + "number of cells (%ld)\n", view->cell, cells->n); + return false; + } + + // Chip-level results + bool mdok; // Status of MD lookup + psMetadata *chipResults = psMemIncrRefCounter(psMetadataLookupMetadata(&mdok, fpaResults, chipName)); + if (!mdok || !chipResults) { + chipResults = psMetadataAlloc(); + } + + if (psListLength(data->headers) > 0 && chip->hdu) { + if (fits && !pmChipReadHeader(chip, fits)) { + goto chipDone; + } + pmHDU *hdu = chip->hdu; // HDU for headers + getMetadata(chipResults, hdu->header, data->headers); + } + if (psListLength(data->concepts) > 0) { + if (fits && !pmChipReadHeader(chip, fits)) { + goto chipDone; + } + pmConceptsReadChip(chip, PM_CONCEPT_SOURCE_ALL, false, false, config->database); + getMetadata(chipResults, chip->concepts, data->concepts); + } + + if (view->cell >= 0) { + pmCell *cell = cells->data[view->cell]; // Cell of interest + cellStats(chipResults, cell, fits, data, config); + goto chipDone; + } + + // Iterate over cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + cellStats(chipResults, cell, fits, data, config); + } + +chipDone: + addToHierarchy(chipResults, fpaResults, chipName, "Results for chip"); + if (fits) { + pmChipFreeData(chip); + } + + return true; +} + + +psMetadata *ppStatsLoop(psMetadata *fpaResults, // Metadata to hold the FPA results + ppStatsData *data, // The data + const pmConfig *config // Configuration + ) +{ + PS_ASSERT_PTR_NON_NULL(data, NULL); + pmFPA *fpa = data->fpa; // FPA to analyse + psFits *fits = data->fits; // FITS file handle + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + pmFPAview *view = psMemIncrRefCounter(data->view); // View for analysis + if (!view) { + view = pmFPAviewAlloc(0); + } + + if (!fpaResults) { + fpaResults = psMetadataAlloc(); + } + + // Iterate through the FPA + if (psListLength(data->headers) > 0 && fpa->hdu) { + if (fits) { + pmFPAReadHeader(fpa, fits); + } + pmHDU *hdu = fpa->hdu; // HDU for headers + getMetadata(fpaResults, hdu->header, data->headers); + } + if (psListLength(data->concepts) > 0) { + if (fits) { + pmFPAReadHeader(fpa, fits); + } + pmConceptsReadFPA(fpa, PM_CONCEPT_SOURCE_ALL, false, config->database); + getMetadata(fpaResults, fpa->concepts, data->concepts); + } + + psArray *chips = fpa->chips; // Array of chips + if (view->chip >= 0) { + pmChip *chip = chips->data[view->chip]; // Chip of interest + chipStats(fpaResults, chip, fits, view, data, config); + goto fpaDone; + } + + // Iterate over cells + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + chipStats(fpaResults, chip, fits, view, data, config); + } + +fpaDone: + if (fits) { + pmFPAFreeData(fpa); + } + psFree(view); + + return fpaResults; +} Index: /branches/rel-1-1/ppStats/src/ppStatsLoop.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsLoop.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsLoop.h (revision 12167) @@ -0,0 +1,13 @@ +#ifndef PP_STATS_LOOP_H +#define PP_STATS_LOOP_H + +#include +#include "ppStatsData.h" + +// Loop over the input image and do all the hard work +psMetadata *ppStatsLoop(psMetadata *fpaResults, // Metadata to hold the FPA results + ppStatsData *data, // The data + const pmConfig *config // Configuration + ); + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.c (revision 12167) @@ -0,0 +1,202 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "ppStats.h" +#include "ppStatsData.h" +#include "ppStatsSetupFromArgs.h" + +// This file is for setting up the required inputs from the command-line + +// Print usage information and die +static void usageAndDie(pmConfig *config // Configuration (contains the arguments list) + ) +{ + printf("Return headers, concepts and/or image statistics.\n\n" + "Usage:\n" + "\t%s INPUT.fits [OUTPUT_NAME]\n" + "\n", config->argv[0]); + psArgumentHelp(config->arguments); + psFree(config); + psLibFinalize(); + pmConceptsDone(); + pmConfigDone(); + exit(EXIT_FAILURE); +} + +// Generate a list from the arguments +static void listFromArguments(psMetadata *arguments, // Arguments to parse + const char *name, // Name of the item, for error message + const char *flag, // The flag for the argument of interest + psList *target // The target list + ) +{ + psString regex = NULL; // Regular expression for the flag + psStringAppend(®ex, "^%s$", flag); + psMetadataIterator *iterator = psMetadataIteratorAlloc(arguments, PS_LIST_HEAD, regex); // Iterator + psFree(regex); + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iterator))) { + if (item->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "%s name is not of type STRING (%x) --- ignored.\n", + name, item->type); + continue; + } + if (item->data.V && strlen(item->data.V) > 0) { + psListAdd(target, PS_LIST_TAIL, item->data.V); + } + } + psFree(iterator); + + return; +} + +// Set the statistics option; for arguments +static inline void statsOptionArguments(psMetadata *arguments, // Arguments to parse + const char *name, // Name for option + ppStatsData *data, // Configuration data + psStatsOptions option // Option to check for + ) +{ + if (psMetadataLookupBool(NULL, arguments, name)) { + data->stats->options |= option; + data->doStats = true; + } + return; +} + +// Print out what we're going to do, from the list +static void checkList(psList *list, // List + const char *name // Name of list + ) +{ + psString value; + psListIterator *iterator = psListIteratorAlloc(list, PS_LIST_HEAD, false); + while ((value = psListGetAndIncrement(iterator))) { + printf("%s: %s\n", name, value); + } + psFree(iterator); + return; +} + + +ppStatsData *ppStatsSetupFromArgs(pmConfig *config // Configuration + ) +{ + // Setup and parse command-line arguments + psMetadata *arguments = config->arguments; // Arguments + psMetadataAddStr(arguments, PS_LIST_TAIL, "-chip", PS_META_DUPLICATE_OK, "Chip to inspect", NULL); + psMetadataAddStr(arguments, PS_LIST_TAIL, "-cell", PS_META_DUPLICATE_OK, "Cell to inspect", NULL); + psMetadataAddStr(arguments, PS_LIST_TAIL, "-header", PS_META_DUPLICATE_OK, "Header to look up", NULL); + psMetadataAddStr(arguments, PS_LIST_TAIL, "-concept", PS_META_DUPLICATE_OK, "Concept to look up", NULL); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-mean", 0, "Calculate sample mean", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-stdev", 0, "Calculate sample standard deviation", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-median", 0, "Calculate sample median", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-quartile", 0, "Calculate sample quartiles", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-robust-median", 0, "Calculate robust median", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-robust-stdev", 0, "Calculate robust standard deviation", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-robust-quartile", 0, "Calculate robust quartile range", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-fitted-mean", 0, "Calculate fitted mean", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-fitted-stdev", 0, "Calculate fitted standard deviation", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-clipped-mean", 0, "Calculate clipped median", false); + psMetadataAddBool(arguments, PS_LIST_TAIL, "-clipped-stdev", 0, "Calculate clipped standard deviation", false); + psMetadataAddS32(arguments, PS_LIST_TAIL, "-iter", 0, "Clipping iterations", 0); + psMetadataAddF32(arguments, PS_LIST_TAIL, "-rej", 0, "Clipping level", 0.0); + psMetadataAddF32(arguments, PS_LIST_TAIL, "-sample", 0, "Sampling fraction", 0.0); + + if (*config->argc == 1) { + // No command-line arguments: print the help + usageAndDie(config); + } + if (!psArgumentParse(arguments, config->argc, config->argv) || + (*config->argc != 2 && *config->argc != 3)) { + printf("Unable to parse command-line arguments.\n\n"); + usageAndDie(config); + } + + // Parse the command-line options + ppStatsData *data = ppStatsDataAlloc(); // The data + const char *inName = config->argv[1]; // Input file name + psArgumentRemove(1, config->argc, config->argv); + + listFromArguments(arguments, "Chip", "-chip", data->chips); + listFromArguments(arguments, "Cell", "-cell", data->cells); + listFromArguments(arguments, "Header", "-header", data->headers); + listFromArguments(arguments, "Concept", "-concept", data->concepts); + + // Set the statistics options + statsOptionArguments(arguments, "-mean", data, PS_STAT_SAMPLE_MEAN); + statsOptionArguments(arguments, "-stdev", data, PS_STAT_SAMPLE_STDEV); + statsOptionArguments(arguments, "-median", data, PS_STAT_SAMPLE_MEDIAN); + statsOptionArguments(arguments, "-quartile", data, PS_STAT_SAMPLE_QUARTILE); + statsOptionArguments(arguments, "-robust-median", data, PS_STAT_ROBUST_MEDIAN); + statsOptionArguments(arguments, "-robust-stdev", data, PS_STAT_ROBUST_STDEV); + statsOptionArguments(arguments, "-robust-quartile", data, PS_STAT_ROBUST_QUARTILE); + statsOptionArguments(arguments, "-fitted-mean", data, PS_STAT_FITTED_MEAN); + statsOptionArguments(arguments, "-fitted-stdev", data, PS_STAT_FITTED_STDEV); + statsOptionArguments(arguments, "-clipped-mean", data, PS_STAT_CLIPPED_MEAN); + statsOptionArguments(arguments, "-clipped-stdev", data, PS_STAT_CLIPPED_STDEV); + data->stats->clipSigma = psMetadataLookupF32(NULL, arguments, "-rej"); + data->stats->clipIter = psMetadataLookupS32(NULL, arguments, "-iter"); + data->sample = psMetadataLookupF32(NULL, arguments, "-sample"); + + + // Open the input file, determine the camera + { + data->fits = psFitsOpen(inName, "r"); + if (!data->fits) { + psError(PS_ERR_IO, false, "Unable to open input file %s\n", inName); + goto die; + } + psMetadata *header = psFitsReadHeader(NULL, data->fits); // The FITS (primary) header + psMetadata *format = pmConfigCameraFormatFromHeader(config, header); + if (!format) { + psError(PS_ERR_UNKNOWN, false, "Unable to determine camera format for %s\n", inName); + psFree(header); + goto die; + } + data->fpa = pmFPAConstruct(config->camera); + if (!data->fpa) { + psError(PS_ERR_UNKNOWN, false, "Unable to construct FPA for %s\n", inName); + psFree(header); + psFree(format); + goto die; + } + pmFPAview *view = pmFPAAddSourceFromHeader(data->fpa, header, format); + psFree(header); + psFree(format); + if (!view) { + psError(PS_ERR_UNKNOWN, false, "Unable to add input file %s to FPA.\n", inName); + goto die; + } + psFree(view); + } + + // Get the rest from the recipe + ppStatsSetupFromRecipe(data, config); + + // Print out what we're going to do + if (psTraceGetLevel("ppStats") > 9) { + checkList(data->chips, "CHIP"); + checkList(data->cells, "CELL"); + checkList(data->headers, "HEADER"); + checkList(data->concepts, "CONCEPT"); + } + + return data; + + // Common path for error conditions: clean up and exit. +die: + psErrorStackPrint (stderr, "failure in %s", __func__); + psFree(config); + psFree(data); + pmConceptsDone(); + pmConfigDone(); + psLibFinalize(); + exit(EXIT_FAILURE); +} Index: /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsSetupFromArgs.h (revision 12167) @@ -0,0 +1,12 @@ +#ifndef PP_STATS_SETUP_FROM_ARGS_H +#define PP_STATS_SETUP_FROM_ARGS_H + +#include +#include "ppStatsData.h" + +// Set up the options and input/output files +ppStatsData *ppStatsSetupFromArgs(pmConfig *config // Configuration + ); + + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.c (revision 12167) @@ -0,0 +1,139 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "ppStats.h" +#include "ppStatsData.h" +#include "ppStatsSetupFromRecipe.h" + +// Strings in a recipe may be defined multiply (with MULTI) or listed on a single line +static void listFromRecipe(psMetadata *recipe, // Recipe to search + const char *name, // Name for item within recipe + psList *target // The target list + ) +{ + // If the list already has entries, don't read anything else + if (psListLength(target) > 0) { + return; + } + + // First check that at least one item of interest exists + psMetadataItem *checkItem = psMetadataLookup(recipe, name); + if (!checkItem) { + // Nothing to see here + return; + } + + psString regex = NULL; // Regular expression for the flag + psStringAppend(®ex, "^%s$", name); + psMetadataIterator *iterator = psMetadataIteratorAlloc(recipe, PS_LIST_HEAD, regex); + psFree(regex); + psMetadataItem *item; + int numItem = 0; // Occurrence of the item in the recipe; to help the user in case of trouble + while ((item = psMetadataGetAndIncrement(iterator))) { + numItem++; + if (item->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "Occurrence %d of %s in the recipe is " + "not of type STRING (%x) --- ignored.\n", numItem, name, item->type); + continue; + } + // Parse into a list of independent values + psList *values = psStringSplit(item->data.V, " ,;", false); + // Copy into the target + psListIterator *valuesIter = psListIteratorAlloc(values, PS_LIST_HEAD, false); + psString valueString; + while ((valueString = psListGetAndIncrement(valuesIter))) { + psListAdd(target, PS_LIST_TAIL, valueString); + } + psFree(valuesIter); + psFree(values); + } + psFree(iterator); + + return; +} + +ppStatsData *ppStatsSetupFromRecipe(ppStatsData *data, // Data for running ppStats + pmConfig *config // Configuration + ) +{ + if (!data) { + data = ppStatsDataAlloc(); + } + + // Determine recipe parameters + bool mdok; // Status of MD lookup + psMetadata *recipe = psMetadataLookupMetadata(&mdok, config->recipes, PPSTATS_RECIPE); + if (!mdok || !recipe) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find recipe %s.\n", PPSTATS_RECIPE); + return data; + } + + listFromRecipe(recipe, "CHIP", data->chips); + listFromRecipe(recipe, "CELL", data->cells); + listFromRecipe(recipe, "HEADER", data->headers); + listFromRecipe(recipe, "CONCEPT", data->concepts); + + // Parse the statistics options + psList *recipeStats = psListAlloc(NULL); // List of statistics options + listFromRecipe(recipe, "STAT", recipeStats); + if (psListLength(recipeStats) > 0) { + psListIterator *iterator = psListIteratorAlloc(recipeStats, PS_LIST_HEAD, false); + psString statString; // Statistic string, from iteration + while ((statString = psListGetAndIncrement(iterator))) { + psStatsOptions stat = psStatsOptionFromString(statString); + if (stat == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Can't interpret STATS entry in recipe: " + "%s --- ignored.\n", statString); + continue; + } + data->stats->options |= stat; + data->doStats = true; + } + } + psFree(recipeStats); + + // Clipping options + if (data->stats->clipIter == 0 && isnan(data->stats->clipSigma)) { + int iter = psMetadataLookupS32(&mdok, recipe, "ITER"); // Number of clipping iterations + if (mdok && iter > 0) { + data->stats->clipIter = iter; + } else { + psLogMsg(__func__, PS_LOG_WARN, "ITER in recipe is not of type S32 and positive --- " + "retaining default.\n"); + } + float rej = psMetadataLookupF32(&mdok, recipe, "REJ"); // Clipping level + if (mdok && rej > 0) { + data->stats->clipSigma = rej; + } else { + psLogMsg(__func__, PS_LOG_WARN, "REJ in recipe is not of type F32 and positive --- " + "retaining default.\n"); + } + } + + if (data->sample == 0) { + float sample = psMetadataLookupF32(&mdok, recipe, "SAMPLE"); // Sample fraction + if (mdok && sample > 0) { + data->sample = sample; + } else { + psLogMsg(__func__, PS_LOG_WARN, "SAMPLE in recipe is not of type F32 and positive --- " + "retaining default.\n"); + } + } + + if (data->maskVal == 0) { + psMaskType maskVal = psMetadataLookupU8(&mdok, recipe, "MASKVAL"); // Mask value + if (mdok) { + data->maskVal = maskVal; + } else { + psLogMsg(__func__, PS_LOG_WARN, "ITER in recipe is not of type U8 --- retaining default.\n"); + } + } + + return data; +} Index: /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsSetupFromRecipe.h (revision 12167) @@ -0,0 +1,11 @@ +#ifndef PP_STATS_SETUP_FROM_RECIPE_H +#define PP_STATS_SETUP_FROM_RECIPE_H + +#include +#include "ppStatsData.h" + +ppStatsData *ppStatsSetupFromRecipe(ppStatsData *data, // Data for running ppStats + pmConfig *config // Configuration + ); + +#endif Index: /branches/rel-1-1/ppStats/src/ppStatsStandAlone.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsStandAlone.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsStandAlone.c (revision 12167) @@ -0,0 +1,94 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#define TIMERNAME "PPSTATS" + +#include "ppStats.h" +#include "ppStatsSetupFromArgs.h" + +int main(int argc, char *argv[]) +{ + psExit status = PS_EXIT_SUCCESS; + + psLibInit(NULL); + psTimerStart(TIMERNAME); + + // Parse the configuration and arguments + pmConfig *config = pmConfigRead(&argc, argv, PPSTATS_RECIPE); + if (!config) { + psError(PS_ERR_UNKNOWN, false, "Unable to read configuration.\n"); + exit(PS_EXIT_CONFIG_ERROR); + } + + // Get the options, open the files + ppStatsData *data = ppStatsSetupFromArgs(config); + if (!data) { + psError(PS_ERR_UNKNOWN, false, "Unable to parse command-line arguments.\n"); + exit(PS_EXIT_CONFIG_ERROR); + } + + // Output filename is optional + const char *outName = NULL; // Output file name + FILE *outFile = stdout; // Output file + if (*config->argc == 2) { + outName = config->argv[1]; + if (outName && strlen(outName) > 0) { + outFile = fopen(outName, "w"); + if (!outFile) { + psLogMsg("ppStats", PS_LOG_ERROR, "Unable to open output file %s\n", outName); + // XXX this could be a system or config error, but not a data error + status = PS_EXIT_CONFIG_ERROR; + goto die; + } + } else { + psLogMsg("ppStats", PS_LOG_ERROR, "Unable to open output file.\n"); + status = PS_EXIT_CONFIG_ERROR; + goto die; + } + } + + // Go through the FPA and do the hard work + psMetadata *results = ppStatsLoop(NULL, data, config); + if (psListLength(results->list) == 0) { + psLogMsg("ppStats", PS_LOG_ERROR, "No output.\n"); + psFree(results); + status = PS_EXIT_DATA_ERROR; + goto die; + } + + // Format and print the output + psString output = psMetadataConfigFormat(results); + if (!output) { + psLogMsg("ppStats", PS_LOG_ERROR, "Unable to generate configuration file with result.\n"); + psFree(results); + status = PS_EXIT_CONFIG_ERROR; + goto die; + } + fprintf(outFile, "%s", output); + psFree(output); + + // Clean up + psFree(results); + if (outName) { + fclose(outFile); + } + + // Common code for the death. +die: + if (status) { + psErrorStackPrint (stderr, "failure in %s", __func__); + } + psFree(data); + psFree(config); + pmConceptsDone(); + pmConfigDone(); + psLibFinalize(); + + return status; +} Index: /branches/rel-1-1/ppStats/src/ppStatsVersion.c =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsVersion.c (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsVersion.c (revision 12167) @@ -0,0 +1,26 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "ppStatsVersion.h" + +static const char *cvsTag = "$Name: not supported by cvs2svn $";// CVS tag name + +psString ppStatsVersion(void) +{ + psString version = NULL; // Version, to return + psStringAppend(&version, "%s-%s",PACKAGE_NAME,PACKAGE_VERSION); + return version; +} + +psString ppStatsVersionLong(void) +{ + psString version = ppStatsVersion(); // Version, to return + psString tag = psStringStripCVS(cvsTag, "Name"); // CVS tag + psStringAppend(&version, " (cvs tag %s) %s, %s", tag, __DATE__, __TIME__); + psFree(tag); + return version; +} Index: /branches/rel-1-1/ppStats/src/ppStatsVersion.h =================================================================== --- /branches/rel-1-1/ppStats/src/ppStatsVersion.h (revision 12167) +++ /branches/rel-1-1/ppStats/src/ppStatsVersion.h (revision 12167) @@ -0,0 +1,10 @@ +#ifndef PP_STATS_VERSION_H +#define PP_STATS_VERSION_H + +/// Return short version information +psString ppStatsVersion(void); + +/// Return long version information +psString ppStatsVersionLong(void); + +#endif Index: /branches/rel-1-1/psLib/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/.cvsignore (revision 12167) @@ -0,0 +1,35 @@ +DoxygenLog +Doxyfile +ChangeLog +bin +lib +include +man +include +pslib.kdevelop.* +docs +Makefile.in +aclocal.m4 +autom4te.cache +configure +Makefile +config.log +config.status +libtool +pslib-config +pslib.pc +pslib-*.tar.gz +pslib-*.tar.bz2 +compile +config.guess +config.sub +depcomp +install-sh +ltmain.sh +missing +pslib.kdevses +.deps +.libs +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/AUTHORS =================================================================== --- /branches/rel-1-1/psLib/AUTHORS (revision 12167) +++ /branches/rel-1-1/psLib/AUTHORS (revision 12167) @@ -0,0 +1,1 @@ +Copyright 2004 Maui High Performance Computing Center, University of Hawaii Index: /branches/rel-1-1/psLib/COPYING =================================================================== --- /branches/rel-1-1/psLib/COPYING (revision 12167) +++ /branches/rel-1-1/psLib/COPYING (revision 12167) @@ -0,0 +1,345 @@ + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + + Copyright (C) 1989, 1991 Free Software Foundation, Inc. + 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The licenses for most software are designed to take away your +freedom to share and change it. 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It is safest +to attach them to the start of each source file to most effectively +convey the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + + +Also add information on how to contact you by electronic and paper mail. + +If the program is interactive, make it output a short notice like this +when it starts in an interactive mode: + + Gnomovision version 69, Copyright (C) year name of author + Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, the commands you use may +be called something other than `show w' and `show c'; they could even be +mouse-clicks or menu items--whatever suits your program. + +You should also get your employer (if you work as a programmer) or your +school, if any, to sign a "copyright disclaimer" for the program, if +necessary. Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the program + `Gnomovision' (which makes passes at compilers) written by James Hacker. + + , 1 April 1989 + Ty Coon, President of Vice + +This General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may +consider it more useful to permit linking proprietary applications with the +library. If this is what you want to do, use the GNU Library General +Public License instead of this License. Index: /branches/rel-1-1/psLib/DEV_NOTES =================================================================== --- /branches/rel-1-1/psLib/DEV_NOTES (revision 12167) +++ /branches/rel-1-1/psLib/DEV_NOTES (revision 12167) @@ -0,0 +1,175 @@ +---- Developing in the autotools environment for non-autotools developers. ---- + + +There are many detailed resources on the web about the autotools (autoconf, +automake, libtools). Being GNU tools, the primary resources are found there +at: + o http://www.gnu.org/software/autoconf/manual/autoconf-2.57/autoconf.html + o http://www.gnu.org/software/automake/manual/automake.html + o http://www.gnu.org/software/libtool/manual.html + +This document will deal with only the basic required tasks for developing in +the autotools environment, namely: + o Creating the configuration environment from CVS check-out, + o Configuring the library, + o Making the library, + o Adding and removing a source code file, and + o Adding and removing a test code file. + + +Creating the configuration environment from CVS check-out +=============================================================================== + +The autotools as a group help you create software distributions which will +build reliably on a large variety of platforms. The minimum required contact +with the autotools is to generate the files which will let you configure a +freshly checked-out directory before working on it, since these configuration +files are not checked in to the repository. The Makefile.cvs makefile will do +this for you, but it can only do this if the autotools are installed (which is +commonly included into every Linux Distribution as well as Mac OSX). + +The command sequence example for this step is as follows: + > cvs co psLib + > cd psLib + > make -f Makefile.cvs + +Configuring the library +=============================================================================== + +Running the configure script is basically very simple: ./configure. There are, +however, options and arguments which can help you, or catch you out. You can +see the full list of options with the command ./configure --help. + +You set the place where the configured component will be installed with the +--prefix option. This names a directory which will end up with the standard +directories bin, lib and so on. The default is `pwd` currently, but that may +change to something like $HOME in the future. + +The psLib autoconf adds a couple of extra options to ./configure that may be +of interest to a developer. + +--enable-perlmodule + enables the building of the perl module using SWIG. The default is to not + build the perl modules + +--enable-optimize + by default, the build disables compiler optimization for C files to speed up + the compile time. By adding this, '-O2' is added to CFLAGS. + +--enable-static + by default, only a shared, dynamically-linked, library is built. This option + enables the creation of a static library at the cost of doubling the compiling + time. To create only a static library, include the --disable-shared option + as well. + +--with-cfitsio=DIR + specifies the location of the CFITSIO installation prefix, e.g., /usr/local. + To specify the include and/or library directories directly, use the options + --with-cfitsio-include=DIR and --with-cfitsio-lib=DIR respectively. If not + specified, CFITSIO is assumed to have been installed in the standard paths + for the OS, e.g., /usr or /usr/local. + +--with-fftw3=DIR + specifies the location of the FFTW3 installation prefix, e.g., /usr/local. + To specify the include and/or library directories directly, use the options + --with-fftw3-include=DIR and --with-fftw3-lib=DIR respectively. If not + specified, FFTW3 is assumed to have been installed in the standard paths + for the OS, e.g., /usr or /usr/local. + +--with-gsl-config=FILE + specifies the gsl-config script to use to gather the GSL library information. + This is the full path to the gsl-config script included in the package's + installation, e.g., /usr/local/bin/gsl-config. If not specified, $PATH is + used to find the script. + +--with-xml2-config=FILE + specifies the xml2-config script to use to gather the XML2 library + information. This is the full path to the xml2-config script included in + the package's installation, e.g., /usr/local/bin/xml2-config. If not + specified, $PATH is used to find the script. + +--with-swig=FILE + specifies the swig executable to use to generate the SWIG wrapper code. + This is the full path to the swig executable, e.g., /usr/bin/swig. If not + specified, $PATH is used to find the executable. + +--with-perl=FILE + specifies the perl executable to use to generate the SWIG wrapper code. + This is the full path to the perl executable, e.g., /usr/bin/perl. If not + specified, $PATH is used to find the executable. + +--with-perlprefix=DIR + specifies the installation prefix for the perl module. If not + specified, the PREFIX as specified by the --prefix option (or its default) + is used. + + +The command sequence example for this step, using all default settings, is as +follows: + > ./configure + + +Adding and removing a source code file +=============================================================================== + +The library is built from a number of smaller, 'convienence' libraries, one +convienence library for each subdirectory off of src. To add a file to the +pslib library, you need to add it to one of convienence libraries in the +appropriate subdirectory + +To add functionality, you need to add the filenames to the Makefile.am in the +subdirectory in which the file is being added. + o The source filename needs to added to the libpslibSUBDIR_la_SOURCES + variable, where SUBDIR is the subdirectory name. + o Any header files needed to be installed (which is generally going to be + all header files) should be added to the pslibinclude_HEADERS variable. + o Any other file needed to be included in the distribution tarball but are + not to be installed should be included in the EXTRA_DIST variable. + +Upon saving Makefile.am, the existing Makefile will detect the change and +automagically perform any executation of automake/autoconf, so a simple +'make' should fold in these changes for you. + + +Adding and removing a test code file +=============================================================================== + +Tests are added into a subdirectory of the test directory which corresponds to +the functionality location under src being tested. For example, if testing +functionality found in src/astronomy/psFoo.c, you will need to add the +corresponding tests in test/astronomy/tst_psFoo.c. If the test driver code +file does not current exist, use test/tst_template.c as a template on how to +utilize the psLib test facilities. + +To add a test, you need to add the filenames to the Makefile.am in the +subdirectory in which the file is being added. + o The source filename minux the .c suffix needs to added to the + TESTS and variable. This specifies the executable target name. + o Using the name you added to TESTS, create a line of the form + tst_psFoo_SOURCES = tst_psFoo.c + This specifies the source files needed to create the test driver + executable (in the psLib test suite, this is generally just one file). + o Any test data file needs to be added to the check_DATA variable and + a rule needs to be created that will copy the file from the source + directory to the build directory. This is because the directory in + which your data file exists is not necessarily where the test executable + is built. The simpliest way to do this is to place the data file in + a subdirectory like 'verified' and create a rule like: + fBiOut.fits: verified/fBiOut.fits + cp $? $@ + Automake will determine that the target directory of the cp should be + the build directory, so the file will be copied to the same directory + as your executable (so that in the code, you can assume the path is '.') + + +Upon saving Makefile.am, the existing Makefile will detect the change and +automagically perform any executation of automake/autoconf, so a simple +'make' should fold in these changes for you. + +------------------------------------------------------------------------------- +N.B. this file is not to be included in distribution packages. + +Gotchas +=============================================================================== + +libtap uses asprintf() which is non-portable Index: /branches/rel-1-1/psLib/Doxyfile.in =================================================================== --- /branches/rel-1-1/psLib/Doxyfile.in (revision 12167) +++ /branches/rel-1-1/psLib/Doxyfile.in (revision 12167) @@ -0,0 +1,1080 @@ +# Doxyfile 1.3.4 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project +# +# All text after a hash (#) is considered a comment and will be ignored +# The format is: +# TAG = value [value, ...] +# For lists items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (" ") + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded +# by quotes) that should identify the project. + +PROJECT_NAME = @PACKAGE_NAME@ + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. +# This could be handy for archiving the generated documentation or +# if some version control system is used. + +PROJECT_NUMBER = @VERSION@ + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) +# base path where the generated documentation will be put. +# If a relative path is entered, it will be relative to the location +# where doxygen was started. If left blank the current directory will be used. + +# @top_builddir@ doesn't work for some reason +OUTPUT_DIRECTORY = @builddir@/docs + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# The default language is English, other supported languages are: +# Brazilian, Catalan, Chinese, Chinese-Traditional, Croatian, Czech, Danish, Dutch, +# Finnish, French, German, Greek, Hungarian, Italian, Japanese, Japanese-en +# (Japanese with English messages), Korean, Norwegian, Polish, Portuguese, +# Romanian, Russian, Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian. + +OUTPUT_LANGUAGE = English + +# This tag can be used to specify the encoding used in the generated output. +# The encoding is not always determined by the language that is chosen, +# but also whether or not the output is meant for Windows or non-Windows users. +# In case there is a difference, setting the USE_WINDOWS_ENCODING tag to YES +# forces the Windows encoding (this is the default for the Windows binary), +# whereas setting the tag to NO uses a Unix-style encoding (the default for +# all platforms other than Windows). + +USE_WINDOWS_ENCODING = NO + +# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will +# include brief member descriptions after the members that are listed in +# the file and class documentation (similar to JavaDoc). +# Set to NO to disable this. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend +# the brief description of a member or function before the detailed description. +# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. + +REPEAT_BRIEF = YES + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# Doxygen will generate a detailed section even if there is only a brief +# description. + +ALWAYS_DETAILED_SEC = YES + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all inherited +# members of a class in the documentation of that class as if those members were +# ordinary class members. Constructors, destructors and assignment operators of +# the base classes will not be shown. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full +# path before files name in the file list and in the header files. If set +# to NO the shortest path that makes the file name unique will be used. + +FULL_PATH_NAMES = NO + +# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag +# can be used to strip a user-defined part of the path. Stripping is +# only done if one of the specified strings matches the left-hand part of +# the path. It is allowed to use relative paths in the argument list. + +STRIP_FROM_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter +# (but less readable) file names. This can be useful is your file systems +# doesn't support long names like on DOS, Mac, or CD-ROM. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen +# will interpret the first line (until the first dot) of a JavaDoc-style +# comment as the brief description. If set to NO, the JavaDoc +# comments will behave just like the Qt-style comments (thus requiring an +# explict @brief command for a brief description. + +JAVADOC_AUTOBRIEF = YES + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen +# treat a multi-line C++ special comment block (i.e. a block of //! or /// +# comments) as a brief description. This used to be the default behaviour. +# The new default is to treat a multi-line C++ comment block as a detailed +# description. Set this tag to YES if you prefer the old behaviour instead. + +MULTILINE_CPP_IS_BRIEF = NO + +# If the DETAILS_AT_TOP tag is set to YES then Doxygen +# will output the detailed description near the top, like JavaDoc. +# If set to NO, the detailed description appears after the member +# documentation. + +DETAILS_AT_TOP = YES + +# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented +# member inherits the documentation from any documented member that it +# reimplements. + +INHERIT_DOCS = YES + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES, then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. + +DISTRIBUTE_GROUP_DOC = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. +# Doxygen uses this value to replace tabs by spaces in code fragments. + +TAB_SIZE = 4 + +# This tag can be used to specify a number of aliases that acts +# as commands in the documentation. An alias has the form "name=value". +# For example adding "sideeffect=\par Side Effects:\n" will allow you to +# put the command \sideeffect (or @sideeffect) in the documentation, which +# will result in a user-defined paragraph with heading "Side Effects:". +# You can put \n's in the value part of an alias to insert newlines. + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources +# only. Doxygen will then generate output that is more tailored for C. +# For instance, some of the names that are used will be different. The list +# of all members will be omitted, etc. + +OPTIMIZE_OUTPUT_FOR_C = YES + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java sources +# only. Doxygen will then generate output that is more tailored for Java. +# For instance, namespaces will be presented as packages, qualified scopes +# will look different, etc. + +OPTIMIZE_OUTPUT_JAVA = NO + +# Set the SUBGROUPING tag to YES (the default) to allow class member groups of +# the same type (for instance a group of public functions) to be put as a +# subgroup of that type (e.g. under the Public Functions section). Set it to +# NO to prevent subgrouping. Alternatively, this can be done per class using +# the \nosubgrouping command. + +SUBGROUPING = NO + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in +# documentation are documented, even if no documentation was available. +# Private class members and static file members will be hidden unless +# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES + +EXTRACT_ALL = YES + +# If the EXTRACT_PRIVATE tag is set to YES all private members of a class +# will be included in the documentation. + +EXTRACT_PRIVATE = NO + +# If the EXTRACT_STATIC tag is set to YES all static members of a file +# will be included in the documentation. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) +# defined locally in source files will be included in the documentation. +# If set to NO only classes defined in header files are included. + +EXTRACT_LOCAL_CLASSES = NO + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all +# undocumented members of documented classes, files or namespaces. +# If set to NO (the default) these members will be included in the +# various overviews, but no documentation section is generated. +# This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. +# If set to NO (the default) these classes will be included in the various +# overviews. This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all +# friend (class|struct|union) declarations. +# If set to NO (the default) these declarations will be included in the +# documentation. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any +# documentation blocks found inside the body of a function. +# If set to NO (the default) these blocks will be appended to the +# function's detailed documentation block. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation +# that is typed after a \internal command is included. If the tag is set +# to NO (the default) then the documentation will be excluded. +# Set it to YES to include the internal documentation. + +INTERNAL_DOCS = NO + +# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate +# file names in lower-case letters. If set to YES upper-case letters are also +# allowed. This is useful if you have classes or files whose names only differ +# in case and if your file system supports case sensitive file names. Windows +# users are advised to set this option to NO. + +CASE_SENSE_NAMES = YES + +# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen +# will show members with their full class and namespace scopes in the +# documentation. If set to YES the scope will be hidden. + +HIDE_SCOPE_NAMES = NO + +# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen +# will put a list of the files that are included by a file in the documentation +# of that file. + +SHOW_INCLUDE_FILES = YES + +# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] +# is inserted in the documentation for inline members. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen +# will sort the (detailed) documentation of file and class members +# alphabetically by member name. If set to NO the members will appear in +# declaration order. + +SORT_MEMBER_DOCS = YES + +# The GENERATE_TODOLIST tag can be used to enable (YES) or +# disable (NO) the todo list. This list is created by putting \todo +# commands in the documentation. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or +# disable (NO) the test list. This list is created by putting \test +# commands in the documentation. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or +# disable (NO) the bug list. This list is created by putting \bug +# commands in the documentation. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or +# disable (NO) the deprecated list. This list is created by putting +# \deprecated commands in the documentation. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional +# documentation sections, marked by \if sectionname ... \endif. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines +# the initial value of a variable or define consists of for it to appear in +# the documentation. If the initializer consists of more lines than specified +# here it will be hidden. Use a value of 0 to hide initializers completely. +# The appearance of the initializer of individual variables and defines in the +# documentation can be controlled using \showinitializer or \hideinitializer +# command in the documentation regardless of this setting. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated +# at the bottom of the documentation of classes and structs. If set to YES the +# list will mention the files that were used to generate the documentation. + +SHOW_USED_FILES = YES + +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated +# by doxygen. Possible values are YES and NO. If left blank NO is used. + +QUIET = NO + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated by doxygen. Possible values are YES and NO. If left blank +# NO is used. + +WARNINGS = YES + +# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings +# for undocumented members. If EXTRACT_ALL is set to YES then this flag will +# automatically be disabled. + +WARN_IF_UNDOCUMENTED = YES + +# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some +# parameters in a documented function, or documenting parameters that +# don't exist or using markup commands wrongly. + +WARN_IF_DOC_ERROR = YES + +# The WARN_FORMAT tag determines the format of the warning messages that +# doxygen can produce. The string should contain the $file, $line, and $text +# tags, which will be replaced by the file and line number from which the +# warning originated and the warning text. + +WARN_FORMAT = "$file:$line: $text" + +# The WARN_LOGFILE tag can be used to specify a file to which warning +# and error messages should be written. If left blank the output is written +# to stderr. + +WARN_LOGFILE = DoxygenLog + +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag can be used to specify the files and/or directories that contain +# documented source files. You may enter file names like "myfile.cpp" or +# directories like "/usr/src/myproject". Separate the files or directories +# with spaces. + +INPUT = @top_srcdir@/src + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank the following patterns are tested: +# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx *.hpp +# *.h++ *.idl *.odl *.cs *.php *.php3 *.inc + +FILE_PATTERNS = *.h *.dox + +# The RECURSIVE tag can be used to turn specify whether or not subdirectories +# should be searched for input files as well. Possible values are YES and NO. +# If left blank NO is used. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used select whether or not files or directories +# that are symbolic links (a Unix filesystem feature) are excluded from the input. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. + +EXCLUDE_PATTERNS = *_wrap.c + +# The EXAMPLE_PATH tag can be used to specify one or more files or +# directories that contain example code fragments that are included (see +# the \include command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank all files are included. + +EXAMPLE_PATTERNS = + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude +# commands irrespective of the value of the RECURSIVE tag. +# Possible values are YES and NO. If left blank NO is used. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or +# directories that contain image that are included in the documentation (see +# the \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command , where +# is the value of the INPUT_FILTER tag, and is the name of an +# input file. Doxygen will then use the output that the filter program writes +# to standard output. + +INPUT_FILTER = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will be used to filter the input files when producing source +# files to browse (i.e. when SOURCE_BROWSER is set to YES). + +FILTER_SOURCE_FILES = NO + +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will +# be generated. Documented entities will be cross-referenced with these sources. + +SOURCE_BROWSER = YES + +# Setting the INLINE_SOURCES tag to YES will include the body +# of functions and classes directly in the documentation. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct +# doxygen to hide any special comment blocks from generated source code +# fragments. Normal C and C++ comments will always remain visible. + +STRIP_CODE_COMMENTS = NO + +# If the REFERENCED_BY_RELATION tag is set to YES (the default) +# then for each documented function all documented +# functions referencing it will be listed. + +REFERENCED_BY_RELATION = YES + +# If the REFERENCES_RELATION tag is set to YES (the default) +# then for each documented function all documented entities +# called/used by that function will be listed. + +REFERENCES_RELATION = YES + +# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen +# will generate a verbatim copy of the header file for each class for +# which an include is specified. Set to NO to disable this. + +VERBATIM_HEADERS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index +# of all compounds will be generated. Enable this if the project +# contains a lot of classes, structs, unions or interfaces. + +ALPHABETICAL_INDEX = YES + +# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then +# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns +# in which this list will be split (can be a number in the range [1..20]) + +COLS_IN_ALPHA_INDEX = 5 + +# In case all classes in a project start with a common prefix, all +# classes will be put under the same header in the alphabetical index. +# The IGNORE_PREFIX tag can be used to specify one or more prefixes that +# should be ignored while generating the index headers. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES (the default) Doxygen will +# generate HTML output. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `html' will be used as the default path. + +HTML_OUTPUT = html + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for +# each generated HTML page (for example: .htm,.php,.asp). If it is left blank +# doxygen will generate files with .html extension. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a personal HTML header for +# each generated HTML page. If it is left blank doxygen will generate a +# standard header. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a personal HTML footer for +# each generated HTML page. If it is left blank doxygen will generate a +# standard footer. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading +# style sheet that is used by each HTML page. It can be used to +# fine-tune the look of the HTML output. If the tag is left blank doxygen +# will generate a default style sheet + +HTML_STYLESHEET = + +# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, +# files or namespaces will be aligned in HTML using tables. If set to +# NO a bullet list will be used. + +HTML_ALIGN_MEMBERS = YES + +# If the GENERATE_HTMLHELP tag is set to YES, additional index files +# will be generated that can be used as input for tools like the +# Microsoft HTML help workshop to generate a compressed HTML help file (.chm) +# of the generated HTML documentation. + +GENERATE_HTMLHELP = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can +# be used to specify the file name of the resulting .chm file. You +# can add a path in front of the file if the result should not be +# written to the html output dir. + +CHM_FILE = + +# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can +# be used to specify the location (absolute path including file name) of +# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run +# the HTML help compiler on the generated index.hhp. + +HHC_LOCATION = + +# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag +# controls if a separate .chi index file is generated (YES) or that +# it should be included in the master .chm file (NO). + +GENERATE_CHI = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag +# controls whether a binary table of contents is generated (YES) or a +# normal table of contents (NO) in the .chm file. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members +# to the contents of the HTML help documentation and to the tree view. + +TOC_EXPAND = YES + +# The DISABLE_INDEX tag can be used to turn on/off the condensed index at +# top of each HTML page. The value NO (the default) enables the index and +# the value YES disables it. + +DISABLE_INDEX = NO + +# This tag can be used to set the number of enum values (range [1..20]) +# that doxygen will group on one line in the generated HTML documentation. + +ENUM_VALUES_PER_LINE = 10 + +# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be +# generated containing a tree-like index structure (just like the one that +# is generated for HTML Help). For this to work a browser that supports +# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, +# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are +# probably better off using the HTML help feature. + +GENERATE_TREEVIEW = NO + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be +# used to set the initial width (in pixels) of the frame in which the tree +# is shown. + +TREEVIEW_WIDTH = 250 + +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- + +# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will +# generate Latex output. + +GENERATE_LATEX = NO + +# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `latex' will be used as the default path. + +LATEX_OUTPUT = latex + +# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be +# invoked. If left blank `latex' will be used as the default command name. + +LATEX_CMD_NAME = latex + +# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to +# generate index for LaTeX. If left blank `makeindex' will be used as the +# default command name. + +MAKEINDEX_CMD_NAME = makeindex + +# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact +# LaTeX documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_LATEX = YES + +# The PAPER_TYPE tag can be used to set the paper type that is used +# by the printer. Possible values are: a4, a4wide, letter, legal and +# executive. If left blank a4wide will be used. + +PAPER_TYPE = letter + +# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX +# packages that should be included in the LaTeX output. + +EXTRA_PACKAGES = times + +# The LATEX_HEADER tag can be used to specify a personal LaTeX header for +# the generated latex document. The header should contain everything until +# the first chapter. If it is left blank doxygen will generate a +# standard header. Notice: only use this tag if you know what you are doing! + +LATEX_HEADER = + +# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated +# is prepared for conversion to pdf (using ps2pdf). The pdf file will +# contain links (just like the HTML output) instead of page references +# This makes the output suitable for online browsing using a pdf viewer. + +PDF_HYPERLINKS = YES + +# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of +# plain latex in the generated Makefile. Set this option to YES to get a +# higher quality PDF documentation. + +USE_PDFLATEX = YES + +# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. +# command to the generated LaTeX files. This will instruct LaTeX to keep +# running if errors occur, instead of asking the user for help. +# This option is also used when generating formulas in HTML. + +LATEX_BATCHMODE = NO + +# If LATEX_HIDE_INDICES is set to YES then doxygen will not +# include the index chapters (such as File Index, Compound Index, etc.) +# in the output. + +LATEX_HIDE_INDICES = NO + +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- + +# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output +# The RTF output is optimised for Word 97 and may not look very pretty with +# other RTF readers or editors. + +GENERATE_RTF = NO + +# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `rtf' will be used as the default path. + +RTF_OUTPUT = rtf + +# If the COMPACT_RTF tag is set to YES Doxygen generates more compact +# RTF documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_RTF = NO + +# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated +# will contain hyperlink fields. The RTF file will +# contain links (just like the HTML output) instead of page references. +# This makes the output suitable for online browsing using WORD or other +# programs which support those fields. +# Note: wordpad (write) and others do not support links. + +RTF_HYPERLINKS = NO + +# Load stylesheet definitions from file. Syntax is similar to doxygen's +# config file, i.e. a series of assigments. You only have to provide +# replacements, missing definitions are set to their default value. + +RTF_STYLESHEET_FILE = + +# Set optional variables used in the generation of an rtf document. +# Syntax is similar to doxygen's config file. + +RTF_EXTENSIONS_FILE = + +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- + +# If the GENERATE_MAN tag is set to YES (the default) Doxygen will +# generate man pages + +GENERATE_MAN = YES + +# The MAN_OUTPUT tag is used to specify where the man pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `man' will be used as the default path. + +MAN_OUTPUT = man + +# The MAN_EXTENSION tag determines the extension that is added to +# the generated man pages (default is the subroutine's section .3) + +MAN_EXTENSION = .3 + +# If the MAN_LINKS tag is set to YES and Doxygen generates man output, +# then it will generate one additional man file for each entity +# documented in the real man page(s). These additional files +# only source the real man page, but without them the man command +# would be unable to find the correct page. The default is NO. + +MAN_LINKS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- + +# If the GENERATE_XML tag is set to YES Doxygen will +# generate an XML file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_XML = NO + +# The XML_OUTPUT tag is used to specify where the XML pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `xml' will be used as the default path. + +XML_OUTPUT = xml + +# The XML_SCHEMA tag can be used to specify an XML schema, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_SCHEMA = + +# The XML_DTD tag can be used to specify an XML DTD, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_DTD = + +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- + +# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will +# generate an AutoGen Definitions (see autogen.sf.net) file +# that captures the structure of the code including all +# documentation. Note that this feature is still experimental +# and incomplete at the moment. + +GENERATE_AUTOGEN_DEF = NO + +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- + +# If the GENERATE_PERLMOD tag is set to YES Doxygen will +# generate a Perl module file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_PERLMOD = NO + +# If the PERLMOD_LATEX tag is set to YES Doxygen will generate +# the necessary Makefile rules, Perl scripts and LaTeX code to be able +# to generate PDF and DVI output from the Perl module output. + +PERLMOD_LATEX = NO + +# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be +# nicely formatted so it can be parsed by a human reader. This is useful +# if you want to understand what is going on. On the other hand, if this +# tag is set to NO the size of the Perl module output will be much smaller +# and Perl will parse it just the same. + +PERLMOD_PRETTY = YES + +# The names of the make variables in the generated doxyrules.make file +# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. +# This is useful so different doxyrules.make files included by the same +# Makefile don't overwrite each other's variables. + +PERLMOD_MAKEVAR_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- + +# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will +# evaluate all C-preprocessor directives found in the sources and include +# files. + +ENABLE_PREPROCESSING = YES + +# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro +# names in the source code. If set to NO (the default) only conditional +# compilation will be performed. Macro expansion can be done in a controlled +# way by setting EXPAND_ONLY_PREDEF to YES. + +MACRO_EXPANSION = NO + +# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES +# then the macro expansion is limited to the macros specified with the +# PREDEFINED and EXPAND_AS_PREDEFINED tags. + +EXPAND_ONLY_PREDEF = NO + +# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files +# in the INCLUDE_PATH (see below) will be search if a #include is found. + +SEARCH_INCLUDES = YES + +# The INCLUDE_PATH tag can be used to specify one or more directories that +# contain include files that are not input files but should be processed by +# the preprocessor. + +INCLUDE_PATH = + +# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard +# patterns (like *.h and *.hpp) to filter out the header-files in the +# directories. If left blank, the patterns specified with FILE_PATTERNS will +# be used. + +INCLUDE_FILE_PATTERNS = + +# The PREDEFINED tag can be used to specify one or more macro names that +# are defined before the preprocessor is started (similar to the -D option of +# gcc). The argument of the tag is a list of macros of the form: name +# or name=definition (no spaces). If the definition and the = are +# omitted =1 is assumed. + +PREDEFINED = DOXYGEN + +# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then +# this tag can be used to specify a list of macro names that should be expanded. +# The macro definition that is found in the sources will be used. +# Use the PREDEFINED tag if you want to use a different macro definition. + +EXPAND_AS_DEFINED = + +# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then +# doxygen's preprocessor will remove all function-like macros that are alone +# on a line, have an all uppercase name, and do not end with a semicolon. Such +# function macros are typically used for boiler-plate code, and will confuse the +# parser if not removed. + +SKIP_FUNCTION_MACROS = YES + +#--------------------------------------------------------------------------- +# Configuration::addtions related to external references +#--------------------------------------------------------------------------- + +# The TAGFILES option can be used to specify one or more tagfiles. +# Optionally an initial location of the external documentation +# can be added for each tagfile. The format of a tag file without +# this location is as follows: +# TAGFILES = file1 file2 ... +# Adding location for the tag files is done as follows: +# TAGFILES = file1=loc1 "file2 = loc2" ... +# where "loc1" and "loc2" can be relative or absolute paths or +# URLs. If a location is present for each tag, the installdox tool +# does not have to be run to correct the links. +# Note that each tag file must have a unique name +# (where the name does NOT include the path) +# If a tag file is not located in the directory in which doxygen +# is run, you must also specify the path to the tagfile here. + +TAGFILES = + +# When a file name is specified after GENERATE_TAGFILE, doxygen will create +# a tag file that is based on the input files it reads. + +GENERATE_TAGFILE = + +# If the ALLEXTERNALS tag is set to YES all external classes will be listed +# in the class index. If set to NO only the inherited external classes +# will be listed. + +ALLEXTERNALS = NO + +# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed +# in the modules index. If set to NO, only the current project's groups will +# be listed. + +EXTERNAL_GROUPS = YES + +# The PERL_PATH should be the absolute path and name of the perl script +# interpreter (i.e. the result of `which perl'). + +PERL_PATH = @PERL@ + +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- + +# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will +# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base or +# super classes. Setting the tag to NO turns the diagrams off. Note that this +# option is superceded by the HAVE_DOT option below. This is only a fallback. It is +# recommended to install and use dot, since it yields more powerful graphs. + +CLASS_DIAGRAMS = YES + +# If set to YES, the inheritance and collaboration graphs will hide +# inheritance and usage relations if the target is undocumented +# or is not a class. + +HIDE_UNDOC_RELATIONS = YES + +# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is +# available from the path. This tool is part of Graphviz, a graph visualization +# toolkit from AT&T and Lucent Bell Labs. The other options in this section +# have no effect if this option is set to NO (the default) + +HAVE_DOT = YES + +# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect inheritance relations. Setting this tag to YES will force the +# the CLASS_DIAGRAMS tag to NO. + +CLASS_GRAPH = YES + +# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect implementation dependencies (inheritance, containment, and +# class references variables) of the class with other documented classes. + +COLLABORATION_GRAPH = YES + +# If the UML_LOOK tag is set to YES doxygen will generate inheritance and +# collaboration diagrams in a style similiar to the OMG's Unified Modeling +# Language. + +UML_LOOK = YES + +# If set to YES, the inheritance and collaboration graphs will show the +# relations between templates and their instances. + +TEMPLATE_RELATIONS = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT +# tags are set to YES then doxygen will generate a graph for each documented +# file showing the direct and indirect include dependencies of the file with +# other documented files. + +INCLUDE_GRAPH = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and +# HAVE_DOT tags are set to YES then doxygen will generate a graph for each +# documented header file showing the documented files that directly or +# indirectly include this file. + +INCLUDED_BY_GRAPH = YES + +# If the CALL_GRAPH and HAVE_DOT tags are set to YES then doxygen will +# generate a call dependency graph for every global function or class method. +# Note that enabling this option will significantly increase the time of a run. +# So in most cases it will be better to enable call graphs for selected +# functions only using the \callgraph command. + +CALL_GRAPH = NO + +# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen +# will graphical hierarchy of all classes instead of a textual one. + +GRAPHICAL_HIERARCHY = YES + +# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images +# generated by dot. Possible values are png, jpg, or gif +# If left blank png will be used. + +DOT_IMAGE_FORMAT = png + +# The tag DOT_PATH can be used to specify the path where the dot tool can be +# found. If left blank, it is assumed the dot tool can be found on the path. + +DOT_PATH = + +# The DOTFILE_DIRS tag can be used to specify one or more directories that +# contain dot files that are included in the documentation (see the +# \dotfile command). + +DOTFILE_DIRS = + +# The MAX_DOT_GRAPH_WIDTH tag can be used to set the maximum allowed width +# (in pixels) of the graphs generated by dot. If a graph becomes larger than +# this value, doxygen will try to truncate the graph, so that it fits within +# the specified constraint. Beware that most browsers cannot cope with very +# large images. + +MAX_DOT_GRAPH_WIDTH = 1024 + +# The MAX_DOT_GRAPH_HEIGHT tag can be used to set the maximum allows height +# (in pixels) of the graphs generated by dot. If a graph becomes larger than +# this value, doxygen will try to truncate the graph, so that it fits within +# the specified constraint. Beware that most browsers cannot cope with very +# large images. + +MAX_DOT_GRAPH_HEIGHT = 1024 + +# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the +# graphs generated by dot. A depth value of 3 means that only nodes reachable +# from the root by following a path via at most 3 edges will be shown. Nodes that +# lay further from the root node will be omitted. Note that setting this option to +# 1 or 2 may greatly reduce the computation time needed for large code bases. Also +# note that a graph may be further truncated if the graph's image dimensions are +# not sufficient to fit the graph (see MAX_DOT_GRAPH_WIDTH and MAX_DOT_GRAPH_HEIGHT). +# If 0 is used for the depth value (the default), the graph is not depth-constrained. + +MAX_DOT_GRAPH_DEPTH = 0 + +# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will +# generate a legend page explaining the meaning of the various boxes and +# arrows in the dot generated graphs. + +GENERATE_LEGEND = YES + +# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will +# remove the intermediate dot files that are used to generate +# the various graphs. + +DOT_CLEANUP = YES + +#--------------------------------------------------------------------------- +# Configuration::addtions related to the search engine +#--------------------------------------------------------------------------- + +# The SEARCHENGINE tag specifies whether or not a search engine should be +# used. If set to NO the values of all tags below this one will be ignored. + +SEARCHENGINE = NO + Index: /branches/rel-1-1/psLib/INSTALL =================================================================== --- /branches/rel-1-1/psLib/INSTALL (revision 12167) +++ /branches/rel-1-1/psLib/INSTALL (revision 12167) @@ -0,0 +1,167 @@ +Basic Installation +================== + + These are generic installation instructions. + + The `configure' shell script attempts to guess correct values for +various system-dependent variables used during compilation. It uses +those values to create a `Makefile' in each directory of the package. +It may also create one or more `.h' files containing system-dependent +definitions. Finally, it creates a shell script `config.status' that +you can run in the future to recreate the current configuration, a file +`config.cache' that saves the results of its tests to speed up +reconfiguring, and a file `config.log' containing compiler output +(useful mainly for debugging `configure'). + + If you need to do unusual things to compile the package, please try +to figure out how `configure' could check whether to do them, and mail +diffs or instructions to the address given in the `README' so they can +be considered for the next release. If at some point `config.cache' +contains results you don't want to keep, you may remove or edit it. + + The file `configure.in' is used to create `configure' by a program +called `autoconf'. You only need `configure.in' if you want to change +it or regenerate `configure' using a newer version of `autoconf'. + +The simplest way to compile this package is: + + 1. `cd' to the directory containing the package's source code and type + `./configure' to configure the package for your system. If you're + using `csh' on an old version of System V, you might need to type + `sh ./configure' instead to prevent `csh' from trying to execute + `configure' itself. + + Running `configure' takes a while. While running, it prints some + messages telling which features it is checking for. + + 2. Type `make' to compile the package. + + 3. Type `make install' to install the programs and any data files and + documentation. + + 4. You can remove the program binaries and object files from the + source code directory by typing `make clean'. + +Compilers and Options +===================== + + Some systems require unusual options for compilation or linking that +the `configure' script does not know about. You can give `configure' +initial values for variables by setting them in the environment. Using +a Bourne-compatible shell, you can do that on the command line like +this: + CC=c89 CFLAGS=-O2 LIBS=-lposix ./configure + +Or on systems that have the `env' program, you can do it like this: + env CPPFLAGS=-I/usr/local/include LDFLAGS=-s ./configure + +Compiling For Multiple Architectures +==================================== + + You can compile the package for more than one kind of computer at the +same time, by placing the object files for each architecture in their +own directory. To do this, you must use a version of `make' that +supports the `VPATH' variable, such as GNU `make'. `cd' to the +directory where you want the object files and executables to go and run +the `configure' script. `configure' automatically checks for the +source code in the directory that `configure' is in and in `..'. + + If you have to use a `make' that does not supports the `VPATH' +variable, you have to compile the package for one architecture at a time +in the source code directory. After you have installed the package for +one architecture, use `make distclean' before reconfiguring for another +architecture. + +Installation Names +================== + + By default, `make install' will install the package's files in +`/usr/local/bin', `/usr/local/man', etc. You can specify an +installation prefix other than `/usr/local' by giving `configure' the +option `--prefix=PATH'. + + You can specify separate installation prefixes for +architecture-specific files and architecture-independent files. If you +give `configure' the option `--exec-prefix=PATH', the package will use +PATH as the prefix for installing programs and libraries. +Documentation and other data files will still use the regular prefix. + + If the package supports it, you can cause programs to be installed +with an extra prefix or suffix on their names by giving `configure' the +option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'. + +Optional Features +================= + + Some packages pay attention to `--enable-FEATURE' options to +`configure', where FEATURE indicates an optional part of the package. +They may also pay attention to `--with-PACKAGE' options, where PACKAGE +is something like `gnu-as' or `x' (for the X Window System). The +`README' should mention any `--enable-' and `--with-' options that the +package recognizes. + + For packages that use the X Window System, `configure' can usually +find the X include and library files automatically, but if it doesn't, +you can use the `configure' options `--x-includes=DIR' and +`--x-libraries=DIR' to specify their locations. + +Specifying the System Type +========================== + + There may be some features `configure' can not figure out +automatically, but needs to determine by the type of host the package +will run on. Usually `configure' can figure that out, but if it prints +a message saying it can not guess the host type, give it the +`--host=TYPE' option. TYPE can either be a short name for the system +type, such as `sun4', or a canonical name with three fields: + CPU-COMPANY-SYSTEM + +See the file `config.sub' for the possible values of each field. If +`config.sub' isn't included in this package, then this package doesn't +need to know the host type. + + If you are building compiler tools for cross-compiling, you can also +use the `--target=TYPE' option to select the type of system they will +produce code for and the `--build=TYPE' option to select the type of +system on which you are compiling the package. + +Sharing Defaults +================ + + If you want to set default values for `configure' scripts to share, +you can create a site shell script called `config.site' that gives +default values for variables like `CC', `cache_file', and `prefix'. +`configure' looks for `PREFIX/share/config.site' if it exists, then +`PREFIX/etc/config.site' if it exists. Or, you can set the +`CONFIG_SITE' environment variable to the location of the site script. +A warning: not all `configure' scripts look for a site script. + +Operation Controls +================== + + `configure' recognizes the following options to control how it +operates. + +`--cache-file=FILE' + Use and save the results of the tests in FILE instead of + `./config.cache'. Set FILE to `/dev/null' to disable caching, for + debugging `configure'. + +`--help' + Print a summary of the options to `configure', and exit. + +`--quiet' +`--silent' +`-q' + Do not print messages saying which checks are being made. + +`--srcdir=DIR' + Look for the package's source code in directory DIR. Usually + `configure' can determine that directory automatically. + +`--version' + Print the version of Autoconf used to generate the `configure' + script, and exit. + +`configure' also accepts some other, not widely useful, options. + Index: /branches/rel-1-1/psLib/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/Makefile.am (revision 12167) @@ -0,0 +1,30 @@ +SUBDIRS = m4 $(SUBDIR) + +bin_SCRIPTS = pslib-config +pkgconfigdir = $(libdir)/pkgconfig +pkgconfig_DATA= pslib.pc + +EXTRA_DIST = \ + Doxyfile.in \ + pslib-config.in \ + pslib.pc.in \ + autogen.sh + +if HAVE_DOXYGEN +install-data-hook: doxygen + -$(mkdir_p) $(mandir)/man3 + chmod 0755 $(mandir)/man3 + -cp $(top_builddir)/docs/man/man3/* $(mandir)/man3 + +doxygen: + $(DOXYGEN) +endif + +CLEANFILES = *~ *.bb *.bbg *.da DoxygenLog + +clean-local: + -rm -rf docs + +test: check + +ACLOCAL_AMFLAGS = -I m4 Index: /branches/rel-1-1/psLib/README =================================================================== --- /branches/rel-1-1/psLib/README (revision 12167) +++ /branches/rel-1-1/psLib/README (revision 12167) @@ -0,0 +1,47 @@ +Pan-STARRS Image Processing Pipeline Library +============================================ + +The is psLib, the Pan-STARRS Image Processing Pipeline Library, a base +collection of functions for the Pan-STARRS PS1 observatory. + +It was developed by the Maui High Performance Computing Center +(http://www.mhpcc.edu) for the University of Hawai'i Institute for Astronomy +(http://ifa.hawaii.edu). + +psLib is free software, you can redistribute it and/or modify it under +the terms of the GNU General Public License. + +The GNU General Public License does not permit this software to be +redistributed in proprietary programs. + +This library is distributed in the hope that it will be useful, but +WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. + +Availability +============ + +The current version of psLib is always available from +http://mhpcc.pan-starrs.org/code. + +Installation +============ + +psLib follows the standard GNU installation procedure. Please consult +the INSTALL file in this distribution for more detailed instructions. + +For information about specific platforms and compilers see the +"Compilation Notes" section in the INSTALL file. + +More information about Pan-STARRS +================================= + +The project homepage is http://www.pan-starrs.org. + +Reporting Bugs +============== + +If you find a bug, please report it via the project's Bugzilla webpage at +http://www.pan-starrs.org/bugzilla or email robert.desonia@mhpcc.hpc.mil. + + Index: /branches/rel-1-1/psLib/autogen.sh =================================================================== --- /branches/rel-1-1/psLib/autogen.sh (revision 12167) +++ /branches/rel-1-1/psLib/autogen.sh (revision 12167) @@ -0,0 +1,113 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=pslib +TEST_TYPE=-f +FILE=pslib.pc.in + +DIE=0 + +if [ "`which glibtoolize 2> /dev/null`" != "" ] + then LIBTOOLIZE=glibtoolize + else LIBTOOLIZE=libtoolize +fi + +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOlIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL -I m4 || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +# bypass taps bootstrap.sh +cd ./test/tap +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/psLib/configure.ac =================================================================== --- /branches/rel-1-1/psLib/configure.ac (revision 12167) +++ /branches/rel-1-1/psLib/configure.ac (revision 12167) @@ -0,0 +1,498 @@ +AC_PREREQ(2.59) + +AC_INIT([pslib],[1.1.0],[http://pan-starrs.ifa.hawaii.edu/bugzilla]) +AC_CONFIG_SRCDIR([pslib.pc.in]) +AC_CANONICAL_TARGET + +dnl this enables the building of libtap +AC_CONFIG_SUBDIRS([test/tap]) + +AM_INIT_AUTOMAKE([1.7 foreign dist-bzip2]) +AC_CONFIG_HEADERS([src/config.h]) +AM_MAINTAINER_MODE + +PSLIB_LT_VERSION="1:1:0" +AC_SUBST(PSLIB_LT_VERSION,$PSLIB_LT_VERSION) + +IPP_STDCFLAGS + +dnl ------------------- PERL options --------------------- + AC_ARG_WITH(perl, + [AS_HELP_STRING(--with-perl=FILE,Specify location of PERL executable.)], + [AC_CHECK_PROG(PERL, $withval, $withval)], + [AC_CHECK_PROG(PERL, perl, `which perl`)]) + if test "$PERL" == "" + then + AC_MSG_ERROR([PERL is required. Use --with-perl to specify its install location.]) + fi + AC_SUBST(PERL,$PERL) + +SUBDIR="etc src share test utils" dnl don't include 'swig', as it is optional + +SRCPATH='${top_srcdir}/src' +SRCDIRS="sys astro db fft fits imageops jpeg math mathtypes types" dnl xml +# escape two escapes at this level so \\ gets passed to the shell and \ to perl +SRCINC=`echo "${SRCDIRS=}" | ${PERL} -pe "s|(\w+)|-I\\\\${SRCPATH=}/\1|g"` +SRCINC="-I${SRCPATH=} ${SRCINC=}" +SRCSUBLIBS=`echo "${SRCDIRS=}" | ${PERL} -pe "s|(\w+)|\1/libpslib\1.la|g"` +AC_SUBST(SRCSUBLIBS,${SRCSUBLIBS=}) +AC_SUBST(SRCINC,${SRCINC=}) +AC_SUBST(ABS_SRCDIR,`pwd`) dnl assuming configure is run in top directory -- is there something better? +AC_PROG_MAKE_SET + +dnl build tests at the same time as the source code +AC_ARG_ENABLE(tests, + [AS_HELP_STRING(--enable-tests,build tests at same time as source)], + [AC_MSG_RESULT(test building enabled) + tests=true], + [tests=false]) +AM_CONDITIONAL(BUILD_TESTS, test x$tests = xtrue) + +dnl turn on mem leak backtracing +AC_ARG_ENABLE(backtrace, + [AS_HELP_STRING(--enable-backtrace, enable memory allocation backtracing)], + [AC_MSG_RESULT(memory allocation backtracing enabled) + AC_DEFINE([PS_MEM_BACKTRACE], 1, [Define to 1 if you want memory backtracing]) + ] +) +AC_CHECK_FUNCS([backtrace]) + +AC_LANG(C) +AC_PROG_CC +dnl _GNU_SOURCE is needed for atleast strcasestr() with glibc +AC_GNU_SOURCE + +dnl enable largefile supports +AC_SYS_LARGEFILE +AC_FUNC_FSEEKO + +AC_PROG_INSTALL +AC_PROG_LIBTOOL + +dnl check the systems endianness +AC_C_BIGENDIAN + +AC_PREFIX_DEFAULT([/usr/local]) +test "$prefix" = NONE && prefix=/usr/local + +dnl ----------------- pthread support -------------------- + +dnl Check for how to link against pthreads +dnl RHEL 4.0 was upset about the first arg to ACX_PTHREAD being NULL ([]) so +dnl we've added in a worthless message to keep it happy +dnl PTHREAD_CFLAGS /must/ also be used in the linking of an exe. Without +dnl adding PTHREAD_CFLAGS into PSLIB_LIBS we can't link exes on Linux. +dnl Basically this means the entire method of only linking psLib's deps in the +dnl final exe or library is flawed. + +ACX_PTHREAD( + [PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${PTHREAD_CFLAGS}" + PSLIB_LIBS="${PSLIB_LIBS=} ${PTHREAD_CFLAGS} ${PTHREAD_LIBS}"], + [AC_MSG_ERROR([pthread support is required to build psLib])] +) + +dnl ----------------- MYSQL options -------------------- + +AX_LIB_MYSQL([4.1.2], + [PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${MYSQL_CFLAGS} -DHAVE_PSDB" + PSLIB_LIBS="${PSLIB_LIBS=} ${MYSQL_LDFLAGS}"], + [PSLIB_CFLAGS="${PSLIB_CFLAGS=}"] +) + +dnl ----------------- CFITSIO options -------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(cfitsio, +[AS_HELP_STRING(--with-cfitsio=DIR,Specify location of CFITSIO.)], +[CFITSIO_CFLAGS="-I$withval/include" + CFITSIO_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(cfitsio-include, +[AS_HELP_STRING(--with-cfitsio-include=DIR,Specify CFITSIO include directory.)], +[CFITSIO_CFLAGS="-I$withval"]) +AC_ARG_WITH(cfitsio-lib, +[AS_HELP_STRING(--with-cfitsio-lib=DIR,Specify CFITSIO library directory.)], +[CFITSIO_LDFLAGS="-L$withval"]) +PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${CFITSIO_CFLAGS}" +PSLIB_LIBS="${PSLIB_LIBS=} $CFITSIO_LDFLAGS -lcfitsio -lm" + +CFLAGS=${CFLAGS} ${CFITSIO_CFLAGS} +LDFLAGS=${LDFLAGS} ${CFITSIO_LDFLAGS} + +AC_CHECK_HEADERS([fitsio.h],[], + [AC_MSG_ERROR([CFITSIO headers not found. Obtain CFITSIO at http://heasarc.gsfc.nasa.gov/docs/software/fitsio or use --with-cfitsio to specify location.])] +) +TMP_LIBS=${LIBS} +AC_CHECK_LIB(cfitsio,ffopen,[], + [AC_MSG_ERROR([CFITSIO library not found. Obtain it at http://heasarc.gsfc.nasa.gov/docs/software/fitsio or use --with-cfitsio to specify location.])],[-lm] +) +dnl Now check if CFITSIO supports fits_open_diskfile, i.e., is at least version 2.501 +AC_CHECK_LIB(cfitsio,ffdkopn, + [CFITSIO_DISKFILE=1], + [AC_MSG_WARN([The CFITSIO library version is rather old. Suggested version is 2.501 or greater.]) + CFITSIO_DISKFILE=0],[-lm] +) + +AC_DEFINE_UNQUOTED([CFITSIO_DISKFILE],${CFITSIO_DISKFILE},[Define to 1 if you have fits_open_diskfile in CFITSIO]) +AC_SUBST([CFITSIO_CFLAGS]) + +dnl restore the LIBS/CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------ FFTW3 options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(fftw3, +[AS_HELP_STRING(--with-fftw3=DIR,Specify location of FFTW version 3.)], +[FFTW3_CFLAGS="-I$withval/include" + FFTW3_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(fftw3-include, +[AS_HELP_STRING(--with-fftw3-include=DIR,Specify FFTW version 3 include directory.)], +[FFTW3_CFLAGS="-I$withval"]) +AC_ARG_WITH(fftw3-lib, +[AS_HELP_STRING(--with-fftw3-lib=DIR,Specify FFTW version 3 library directory.)], +[FFTW3_LDFLAGS="-L$withval"]) +PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${FFTW3_CFLAGS}" +PSLIB_LIBS="${PSLIB_LIBS=} $FFTW3_LDFLAGS -lfftw3f" + +CFLAGS="${CFLAGS} ${FFTW3_CFLAGS}" +CPPFLAGS=${CFLAGS} +LDFLAGS="${LDFLAGS} ${FFTW3_LIBS}" + +AC_CHECK_HEADERS([fftw3.h],[], + [AC_MSG_ERROR([FFTW version 3 (--enable-float) headers not found. Obtain it at http://www.fftw.org/ or use --with-fftw3 to specify location.])] +) +AC_CHECK_LIB(fftw3f,fftwf_plan_dft_2d,[], + [AC_MSG_ERROR([FFTW version 3 (--enable-float) library not found. Obtain it at http://www.fftw.org/ or use --with-fftw3 to specify location.])],[-lm] +) + +AC_SUBST([FFTW3_CFLAGS]) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl -------------------- GSL options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(gsl-config, +[AS_HELP_STRING(--with-gsl-config=FILE,Specify location of gsl-config.)], +[GSL_CONFIG=$withval], +[GSL_CONFIG=`which gsl-config`]) +AC_CHECK_FILE($GSL_CONFIG,[], + [AC_MSG_ERROR([GSL is required. Obtain it at http://www.gnu.org/software/gsl or use --with-gsl-config to specify location.])]) + +AC_MSG_CHECKING([GSL cflags]) +GSL_CFLAGS="`${GSL_CONFIG} --cflags`" +AC_MSG_RESULT([${GSL_CFLAGS}]) + +AC_MSG_CHECKING([GSL ldflags]) +GSL_LDFLAGS="`${GSL_CONFIG} --libs`" +AC_MSG_RESULT([${GSL_LDFLAGS}]) + +PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${GSL_CFLAGS}" +PSLIB_LIBS="${PSLIB_LIBS=} ${GSL_LDFLAGS}" + +AC_SUBST([GSL_CFLAGS]) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------ libjpeg options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(jpeg, +[AS_HELP_STRING(--with-jpeg=DIR,Specify location of libjpeg.)], +[JPEG_CFLAGS="-I$withval/include" + JPEG_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(jpeg-include, +[AS_HELP_STRING(--with-jpeg-include=DIR,Specify libjpeg include directory.)], +[JPEG_CFLAGS="-I$withval"]) +AC_ARG_WITH(jpeg-lib, +[AS_HELP_STRING(--with-jpeg-lib=DIR,Specify libjpeg library directory.)], +[JPEG_LDFLAGS="-L$withval"]) + +CFLAGS="${CFLAGS} ${JPEG_CFLAGS}" +CPPFLAGS=${CFLAGS} +LDFLAGS="${LDFLAGS} ${JPEG_LDFLAGS}" + +AC_CHECK_HEADERS([jpeglib.h],[PSLIB_CFLAGS="$PSLIB_CFLAGS $JPEG_CFLAGS" + AC_SUBST(JPEG_CFLAGS)], + [AC_MSG_ERROR([libjpeg headers not found. Obtain libjpeg from http://www.ijg.org/ or use --with-jpeg to specify location.])] +) + +AC_CHECK_LIB(jpeg,jpeg_CreateCompress,[PSLIB_LIBS="$PSLIB_LIBS $JPEG_LDFLAGS -ljpeg"], + [AC_MSG_ERROR([libjpeg library not found. Obtain libjpeg from http://www.ijg.org/ or use --with-jpeg to specify location.])] +) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------- XML2 options --------------------- +dnl AC_ARG_WITH(xml2-config, +dnl [AS_HELP_STRING(--with-xml2-config=FILE,Specify location of xml2-config.)], +dnl [XML_CONFIG=$withval], +dnl [XML_CONFIG=`which xml2-config`]) +dnl AC_CHECK_FILE($XML_CONFIG,[], +dnl [AC_MSG_ERROR([GNOME XML C parser is required. Obtain it at http://www.xmlsoft.org or use --with-xml2-config to specify location.])]) +dnl +dnl AC_MSG_CHECKING([xml2 version]) +dnl XML_VERSION=`xml2-config --version` +dnl XML_VERSION_major=`echo $XML_VERSION | ${PERL} -pe 's|^(\d+).*|\1|'` +dnl XML_VERSION_minor=`echo $XML_VERSION | ${PERL} -pe 's|^(\d+)\.(\d+).*|\2|'` +dnl dnl First test the minimum version of 2.6 +dnl if test $XML_VERSION_major -lt 2 || ( test $XML_VERSION_major -eq 2 && test $XML_VERSION_minor -lt 6 ) +dnl then +dnl AC_MSG_ERROR([requires libxml2 2.6.0 or greater, found $XML_VERSION. Install newer version or use --with-xml2-config to specify another location.]) +dnl else +dnl AC_MSG_RESULT([$XML_VERSION... yes]) +dnl fi +dnl +dnl AC_MSG_CHECKING([xml2 cflags]) +dnl XML_CFLAGS="`${XML_CONFIG} --cflags`" +dnl AC_MSG_RESULT([${XML_CFLAGS}]) +dnl +dnl AC_MSG_CHECKING([xml2 ldflags]) +dnl XML_LDFLAGS="`${XML_CONFIG} --libs`" +dnl AC_MSG_RESULT([${XML_LDFLAGS}]) +dnl +dnl PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${XML_CFLAGS}" +dnl PSLIB_LIBS="${PSLIB_LIBS=} ${XML_LDFLAGS}" +dnl +dnl AC_SUBST([XML_CFLAGS]) + +dnl ------------------- SWIG options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_ENABLE(perlmodule, + [AS_HELP_STRING(--enable-perlmodule,Enables creation of perl module)], + [SWIG_REQ="$enableval"], + [SWIG_REQ="no"]) + +if test "$SWIG_REQ" == "yes" +then + AC_MSG_RESULT([enable building perl module]) + AC_ARG_WITH(swig, + [AS_HELP_STRING(--with-swig=FILE,Specify location of SWIG executable.)], + [SWIG=$withval], + [SWIG=`which swig`]) + AC_SUBST(SWIG,$SWIG) + + AC_CHECK_FILE($SWIG,[], + [AC_MSG_ERROR([SWIG is required. Obtain it at www.swig.org or use --with-swig to specify its install location.])]) + SUBDIR="${SUBDIR=} swig" + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ---------------- PERLPREFIX option ------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + + AC_ARG_WITH(perlprefix, + [AS_HELP_STRING(--with-perlprefix=DIR,Specify prefix of Perl Module's installation. (default=PREFIX))], + [PERL_PREFIX="$withval"], + [PERL_PREFIX="$prefix"]) + AC_SUBST(PERL_PREFIX,$PERL_PREFIX) + AC_SUBST(PERL_INSTALLSYTLE,[`perl '-V:installstyle'`]) + +else + AC_MSG_RESULT([disable building perl module]) +fi + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl for MacOSX suppport -- check if sqrtf is in mx library. + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_CHECK_LIB(mx,sqrtf, + [PSLIB_LIBS="${PSLIB_LIBS=} -lmx"]) +LIBS=${TMP_LIBS} +AC_CHECK_FUNC(atoll, [], + [AC_MSG_ERROR([The C99 function, atoll, is required; update your compiler version?])]) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl doxygen doc generation is very, very slow so we're turing it off by default + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_ENABLE(doxygen, + [AS_HELP_STRING(--enable-doxygen ,enable manpage generation)], + [AC_MSG_RESULT(doxygen enabled) + AC_PATH_PROG([DOXYGEN], [doxygen], []) + ], + [AC_MSG_RESULT([doxygen disabled]) + doxygen=off + ] +) +AM_CONDITIONAL([HAVE_DOXYGEN], test -n "$DOXYGEN" -a "x$doxygen" != "xoff") + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------- openssl --------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(ssl, +[AS_HELP_STRING(--with-ssl=DIR,Specify location of SSL.)], +[SSL_CFLAGS="-I$withval/include" + SSL_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(ssl-include, +[AS_HELP_STRING(--with-ssl-include=DIR,Specify SSL include directory.)], +[SSL_CFLAGS="-I$withval"]) +AC_ARG_WITH(ssl-lib, +[AS_HELP_STRING(--with-ssl-lib=DIR,Specify SSL library directory.)], +[SSL_LDFLAGS="-L$withval"]) +PSLIB_CFLAGS="${PSLIB_CFLAGS=} ${SSL_CFLAGS}" +PSLIB_LIBS="${PSLIB_LIBS=} $SSL_LDFLAGS -lssl" + +CFLAGS="${CFLAGS} ${SSL_CFLAGS}" +CPPFLAGS=${CFLAGS} +LDFLAGS="${LDFLAGS} ${SSL_LIBS}" + +AC_CHECK_HEADERS([openssl/md5.h],[], + [AC_MSG_ERROR([SSL headers not found. Obtain it at http://www.openssl.org/ or use --with-ssl to specify location.])] +) +AC_CHECK_LIB(ssl,MD5,[], + [AC_MSG_ERROR([SSL library not found. Obtain it at http://www.openssl.org/ or use --with-ssl to specify location.])] +) + +AC_SUBST([SSL_CFLAGS]) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl set NO_STRCASESTR if we can't find strcasestr +AC_CHECK_FUNC([strcasestr], [], [AC_SUBST(NO_STRCASESTR, [1])]) + +dnl ------- enable -Werror after all of the probes have run --------- +IPP_STDOPTS + +CFLAGS="${CFLAGS} -Wall -Werror" +dnl enable POSIX/XSI and C99 compliance +CFLAGS="${CFLAGS=} -D_XOPEN_SOURCE=600 -D_POSIX_C_SOURCE=200112L -std=c99" + +dnl ---------------- export variables -------------------- + +AC_SUBST(SUBDIR,[$SUBDIR]) +AC_SUBST(SRCDIRS,[$SRCDIRS]) +AC_SUBST(PSLIB_LIBS,[$PSLIB_LIBS]) +AC_SUBST(PSLIB_CFLAGS,[$PSLIB_CFLAGS]) + +AC_SUBST(PS_LANG,[en]) + +AC_CONFIG_FILES([ + Doxyfile + Makefile + etc/Makefile + m4/Makefile + pslib-config + pslib.pc + share/Makefile + src/Makefile + src/astro/Makefile + src/db/Makefile + src/fft/Makefile + src/fits/Makefile + src/imageops/Makefile + src/jpeg/Makefile + src/math/Makefile + src/mathtypes/Makefile + src/sys/Makefile + src/types/Makefile + test/Makefile + test/astro/Makefile + test/db/Makefile + test/fft/Makefile + test/fits/Makefile + test/imageops/Makefile + test/jpeg/Makefile + test/math/Makefile + test/mathtypes/Makefile + test/pstap/Makefile + test/pstap/src/Makefile + test/sys/Makefile + test/types/Makefile + utils/Makefile +]) +dnl src/xml/Makefile +dnl test/xml/Makefile + + +#if test "$SWIG_REQ" == "yes" +#then +# AC_CONFIG_FILES([ swig/Makefile ]) +#fi + +AC_OUTPUT Index: /branches/rel-1-1/psLib/etc/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/etc/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/etc/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +pslib.config Index: /branches/rel-1-1/psLib/etc/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/etc/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/etc/Makefile.am (revision 12167) @@ -0,0 +1,15 @@ +BUILT_SOURCES = pslib.config +EXTRA_DIST = pslib.config.template + +# this is done instead of using autoconf to delay the expansion of datadir +# until --prefix is known +pslib.config: $(srcdir)/pslib.config.template + $(PERL) -pe 's|DATADIR|$(pkgdatadir)|' $? > $@ + +pslibconfdir = $(sysconfdir)/@PACKAGE_NAME@ +pslibconf_DATA = pslib.config + +#install-data-hook: +# chmod 0755 $(pslibconfdir) + +CLEANFILES = pslib.config Index: /branches/rel-1-1/psLib/etc/pslib.config.template =================================================================== --- /branches/rel-1-1/psLib/etc/pslib.config.template (revision 12167) +++ /branches/rel-1-1/psLib/etc/pslib.config.template (revision 12167) @@ -0,0 +1,43 @@ +# This configuration file specifies values required by psLib. +# +# psTime settings +# +psLib.time.tables.dir STR DATADIR +psLib.time.tables.n S32 4 # Number of time tables +psLib.time.tables.files STR daily.dat eopc01_1900_2004.dat finals_all.dat tai_utc.dat +psLib.time.tables.format STR %lf %lf %lf %lf %lf %lf %lf, %lf %lf %lf %lf, %lf %lf %lf %lf %lf %lf %lf, %lf %lf %lf %lf +@psLib.time.tables.index S32 0, 0, 0, 0 +@psLib.time.tables.from F64 53403.0, 15020.0, 41684.0 2437300.5 # Valid from these dates +@psLib.time.tables.to F64 53583.0, 53258.0, 53627.0 2451179.5 # Valid to these dates +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569, 0.0555, -0.0200, 0.0513, 0.1483 +@psLib.time.predict.yp F64 0.3498, -0.0176, -0.0498, 0.1483, -0.0513 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944, -0.00023, 53262.0 +# +# psEOC settings +# +psLib.eoc.precession.table.format STR %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf %lf +psLib.eoc.precession.iers.table.format STR %lf %lf %lf %lf %lf +psLib.eoc.precession.finals.table.format STR %lf %lf %lf %lf %lf %lf %lf +psLib.eoc.precession.table.file.x STR DATADIR/tab5.2a.dat +psLib.eoc.precession.table.file.y STR DATADIR/tab5.2b.dat +psLib.eoc.precession.table.file.s STR DATADIR/tab5.2c.dat +psLib.eoc.precession.table.file.iers STR DATADIR/finals2000A.dat +psLib.eoc.precession.table.file.final STR DATADIR/finals_all.dat +@psLib.eoc.precession.poly.x F64 -16616.99 2004191742.88 -427219.05 -198620.54 -46.05 5.98 +@psLib.eoc.precession.poly.y F64 -6950.78 -25381.99 -22407250.99 1842.28 1113.06 0.99 +@psLib.eoc.precession.poly.s F64 94.0 3808.35 -119.94 -72574.09 27.70 15.61 + + + Index: /branches/rel-1-1/psLib/m4/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/m4/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/m4/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/psLib/m4/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/m4/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/m4/Makefile.am (revision 12167) @@ -0,0 +1,9 @@ +installed_m4 = ipp_stdopts.m4 + +EXTRA_DIST= \ + acx_pthread.m4 \ + ax_lib_mysql.m4 \ + $(installed_m4) + +m4datadir = $(datadir)/aclocal +m4data_DATA = $(installed_m4) Index: /branches/rel-1-1/psLib/m4/acx_pthread.m4 =================================================================== --- /branches/rel-1-1/psLib/m4/acx_pthread.m4 (revision 12167) +++ /branches/rel-1-1/psLib/m4/acx_pthread.m4 (revision 12167) @@ -0,0 +1,242 @@ +dnl @synopsis ACX_PTHREAD([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +dnl +dnl @summary figure out how to build C programs using POSIX threads +dnl +dnl This macro figures out how to build C programs using POSIX threads. +dnl It sets the PTHREAD_LIBS output variable to the threads library and +dnl linker flags, and the PTHREAD_CFLAGS output variable to any special +dnl C compiler flags that are needed. (The user can also force certain +dnl compiler flags/libs to be tested by setting these environment +dnl variables.) +dnl +dnl Also sets PTHREAD_CC to any special C compiler that is needed for +dnl multi-threaded programs (defaults to the value of CC otherwise). +dnl (This is necessary on AIX to use the special cc_r compiler alias.) +dnl +dnl NOTE: You are assumed to not only compile your program with these +dnl flags, but also link it with them as well. e.g. you should link +dnl with $PTHREAD_CC $CFLAGS $PTHREAD_CFLAGS $LDFLAGS ... $PTHREAD_LIBS +dnl $LIBS +dnl +dnl If you are only building threads programs, you may wish to use +dnl these variables in your default LIBS, CFLAGS, and CC: +dnl +dnl LIBS="$PTHREAD_LIBS $LIBS" +dnl CFLAGS="$CFLAGS $PTHREAD_CFLAGS" +dnl CC="$PTHREAD_CC" +dnl +dnl In addition, if the PTHREAD_CREATE_JOINABLE thread-attribute +dnl constant has a nonstandard name, defines PTHREAD_CREATE_JOINABLE to +dnl that name (e.g. PTHREAD_CREATE_UNDETACHED on AIX). +dnl +dnl ACTION-IF-FOUND is a list of shell commands to run if a threads +dnl library is found, and ACTION-IF-NOT-FOUND is a list of commands to +dnl run it if it is not found. If ACTION-IF-FOUND is not specified, the +dnl default action will define HAVE_PTHREAD. +dnl +dnl Please let the authors know if this macro fails on any platform, or +dnl if you have any other suggestions or comments. This macro was based +dnl on work by SGJ on autoconf scripts for FFTW (www.fftw.org) (with +dnl help from M. Frigo), as well as ac_pthread and hb_pthread macros +dnl posted by Alejandro Forero Cuervo to the autoconf macro repository. +dnl We are also grateful for the helpful feedback of numerous users. +dnl +dnl @category InstalledPackages +dnl @author Steven G. Johnson +dnl @version 2006-05-29 +dnl @license GPLWithACException + +AC_DEFUN([ACX_PTHREAD], [ +AC_REQUIRE([AC_CANONICAL_HOST]) +AC_LANG_SAVE +AC_LANG_C +acx_pthread_ok=no + +# We used to check for pthread.h first, but this fails if pthread.h +# requires special compiler flags (e.g. on True64 or Sequent). +# It gets checked for in the link test anyway. + +# First of all, check if the user has set any of the PTHREAD_LIBS, +# etcetera environment variables, and if threads linking works using +# them: +if test x"$PTHREAD_LIBS$PTHREAD_CFLAGS" != x; then + save_CFLAGS="$CFLAGS" + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + save_LIBS="$LIBS" + LIBS="$PTHREAD_LIBS $LIBS" + AC_MSG_CHECKING([for pthread_join in LIBS=$PTHREAD_LIBS with CFLAGS=$PTHREAD_CFLAGS]) + AC_TRY_LINK_FUNC(pthread_join, acx_pthread_ok=yes) + AC_MSG_RESULT($acx_pthread_ok) + if test x"$acx_pthread_ok" = xno; then + PTHREAD_LIBS="" + PTHREAD_CFLAGS="" + fi + LIBS="$save_LIBS" + CFLAGS="$save_CFLAGS" +fi + +# We must check for the threads library under a number of different +# names; the ordering is very important because some systems +# (e.g. DEC) have both -lpthread and -lpthreads, where one of the +# libraries is broken (non-POSIX). + +# Create a list of thread flags to try. Items starting with a "-" are +# C compiler flags, and other items are library names, except for "none" +# which indicates that we try without any flags at all, and "pthread-config" +# which is a program returning the flags for the Pth emulation library. + +acx_pthread_flags="pthreads none -Kthread -kthread lthread -pthread -pthreads -mthreads pthread --thread-safe -mt pthread-config" + +# The ordering *is* (sometimes) important. Some notes on the +# individual items follow: + +# pthreads: AIX (must check this before -lpthread) +# none: in case threads are in libc; should be tried before -Kthread and +# other compiler flags to prevent continual compiler warnings +# -Kthread: Sequent (threads in libc, but -Kthread needed for pthread.h) +# -kthread: FreeBSD kernel threads (preferred to -pthread since SMP-able) +# lthread: LinuxThreads port on FreeBSD (also preferred to -pthread) +# -pthread: Linux/gcc (kernel threads), BSD/gcc (userland threads) +# -pthreads: Solaris/gcc +# -mthreads: Mingw32/gcc, Lynx/gcc +# -mt: Sun Workshop C (may only link SunOS threads [-lthread], but it +# doesn't hurt to check since this sometimes defines pthreads too; +# also defines -D_REENTRANT) +# ... -mt is also the pthreads flag for HP/aCC +# pthread: Linux, etcetera +# --thread-safe: KAI C++ +# pthread-config: use pthread-config program (for GNU Pth library) + +case "${host_cpu}-${host_os}" in + *solaris*) + + # On Solaris (at least, for some versions), libc contains stubbed + # (non-functional) versions of the pthreads routines, so link-based + # tests will erroneously succeed. (We need to link with -pthreads/-mt/ + # -lpthread.) (The stubs are missing pthread_cleanup_push, or rather + # a function called by this macro, so we could check for that, but + # who knows whether they'll stub that too in a future libc.) So, + # we'll just look for -pthreads and -lpthread first: + + acx_pthread_flags="-pthreads pthread -mt -pthread $acx_pthread_flags" + ;; +esac + +if test x"$acx_pthread_ok" = xno; then +for flag in $acx_pthread_flags; do + + case $flag in + none) + AC_MSG_CHECKING([whether pthreads work without any flags]) + ;; + + -*) + AC_MSG_CHECKING([whether pthreads work with $flag]) + PTHREAD_CFLAGS="$flag" + ;; + + pthread-config) + AC_CHECK_PROG(acx_pthread_config, pthread-config, yes, no) + if test x"$acx_pthread_config" = xno; then continue; fi + PTHREAD_CFLAGS="`pthread-config --cflags`" + PTHREAD_LIBS="`pthread-config --ldflags` `pthread-config --libs`" + ;; + + *) + AC_MSG_CHECKING([for the pthreads library -l$flag]) + PTHREAD_LIBS="-l$flag" + ;; + esac + + save_LIBS="$LIBS" + save_CFLAGS="$CFLAGS" + LIBS="$PTHREAD_LIBS $LIBS" + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + + # Check for various functions. We must include pthread.h, + # since some functions may be macros. (On the Sequent, we + # need a special flag -Kthread to make this header compile.) + # We check for pthread_join because it is in -lpthread on IRIX + # while pthread_create is in libc. We check for pthread_attr_init + # due to DEC craziness with -lpthreads. We check for + # pthread_cleanup_push because it is one of the few pthread + # functions on Solaris that doesn't have a non-functional libc stub. + # We try pthread_create on general principles. + AC_TRY_LINK([#include ], + [pthread_t th; pthread_join(th, 0); + pthread_attr_init(0); pthread_cleanup_push(0, 0); + pthread_create(0,0,0,0); pthread_cleanup_pop(0); ], + [acx_pthread_ok=yes]) + + LIBS="$save_LIBS" + CFLAGS="$save_CFLAGS" + + AC_MSG_RESULT($acx_pthread_ok) + if test "x$acx_pthread_ok" = xyes; then + break; + fi + + PTHREAD_LIBS="" + PTHREAD_CFLAGS="" +done +fi + +# Various other checks: +if test "x$acx_pthread_ok" = xyes; then + save_LIBS="$LIBS" + LIBS="$PTHREAD_LIBS $LIBS" + save_CFLAGS="$CFLAGS" + CFLAGS="$CFLAGS $PTHREAD_CFLAGS" + + # Detect AIX lossage: JOINABLE attribute is called UNDETACHED. + AC_MSG_CHECKING([for joinable pthread attribute]) + attr_name=unknown + for attr in PTHREAD_CREATE_JOINABLE PTHREAD_CREATE_UNDETACHED; do + AC_TRY_LINK([#include ], [int attr=$attr; return attr;], + [attr_name=$attr; break]) + done + AC_MSG_RESULT($attr_name) + if test "$attr_name" != PTHREAD_CREATE_JOINABLE; then + AC_DEFINE_UNQUOTED(PTHREAD_CREATE_JOINABLE, $attr_name, + [Define to necessary symbol if this constant + uses a non-standard name on your system.]) + fi + + AC_MSG_CHECKING([if more special flags are required for pthreads]) + flag=no + case "${host_cpu}-${host_os}" in + *-aix* | *-freebsd* | *-darwin*) flag="-D_THREAD_SAFE";; + *solaris* | *-osf* | *-hpux*) flag="-D_REENTRANT";; + esac + AC_MSG_RESULT(${flag}) + if test "x$flag" != xno; then + PTHREAD_CFLAGS="$flag $PTHREAD_CFLAGS" + fi + + LIBS="$save_LIBS" + CFLAGS="$save_CFLAGS" + + # More AIX lossage: must compile with xlc_r or cc_r + if test x"$GCC" != xyes; then + AC_CHECK_PROGS(PTHREAD_CC, xlc_r cc_r, ${CC}) + else + PTHREAD_CC=$CC + fi +else + PTHREAD_CC="$CC" +fi + +AC_SUBST(PTHREAD_LIBS) +AC_SUBST(PTHREAD_CFLAGS) +AC_SUBST(PTHREAD_CC) + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x"$acx_pthread_ok" = xyes; then + ifelse([$1],,AC_DEFINE(HAVE_PTHREAD,1,[Define if you have POSIX threads libraries and header files.]),[$1]) + : +else + acx_pthread_ok=no + $2 +fi +AC_LANG_RESTORE +])dnl ACX_PTHREAD Index: /branches/rel-1-1/psLib/m4/ax_lib_mysql.m4 =================================================================== --- /branches/rel-1-1/psLib/m4/ax_lib_mysql.m4 (revision 12167) +++ /branches/rel-1-1/psLib/m4/ax_lib_mysql.m4 (revision 12167) @@ -0,0 +1,158 @@ +##### http://autoconf-archive.cryp.to/ax_lib_mysql.html +# +# SYNOPSIS +# +# AX_LIB_MYSQL([MINIMUM-VERSION[, ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]]) +# +# DESCRIPTION +# +# This macro provides tests of availability of MySQL client library +# of particular version or newer. +# +# AX_LIB_MYSQL macro takes only one argument which is optional. If +# there is no required version passed, then macro does not run +# version test. +# +# The --with-mysql option takes one of three possible values: +# +# no - do not check for MySQL client library +# +# yes - do check for MySQL library in standard locations +# (mysql_config should be in the PATH) +# +# path - complete path to mysql_config utility, use this option if +# mysql_config can't be found in the PATH +# +# This macro calls: +# +# AC_SUBST(MYSQL_CFLAGS) +# AC_SUBST(MYSQL_LDFLAGS) +# AC_SUBST(MYSQL_VERSION) +# +# And sets: +# +# HAVE_MYSQL +# +# LAST MODIFICATION +# +# 2006-07-16 +# +# COPYLEFT +# +# Copyright (c) 2006 Mateusz Loskot +# +# Copying and distribution of this file, with or without +# modification, are permitted in any medium without royalty provided +# the copyright notice and this notice are preserved. + +AC_DEFUN([AX_LIB_MYSQL], +[ + AC_ARG_WITH([mysql], + AC_HELP_STRING([--with-mysql=@<:@ARG@:>@], + [use MySQL client library @<:@default=yes@:>@, optionally specify path to mysql_config] + ), + [ + if test "$withval" = "no"; then + want_mysql="no" + elif test "$withval" = "yes"; then + want_mysql="yes" + else + want_mysql="yes" + MYSQL_CONFIG="$withval" + fi + ], + [want_mysql="yes"] + ) + + MYSQL_CFLAGS="" + MYSQL_LDFLAGS="" + MYSQL_VERSION="" + + dnl + dnl Check MySQL libraries (libpq) + dnl + + if test "$want_mysql" = "yes"; then + + if test -z "$MYSQL_CONFIG" -o test; then + AC_PATH_PROG([MYSQL_CONFIG], [mysql_config], [no]) + fi + + if test "$MYSQL_CONFIG" != "no"; then + AC_MSG_CHECKING([for MySQL libraries]) + + MYSQL_CFLAGS="`$MYSQL_CONFIG --cflags`" + MYSQL_LDFLAGS="`$MYSQL_CONFIG --libs`" + + MYSQL_VERSION=`$MYSQL_CONFIG --version` + + AC_DEFINE([HAVE_MYSQL], [1], + [Define to 1 if MySQL libraries are available]) + + found_mysql="yes" + AC_MSG_RESULT([yes]) + else + found_mysql="no" + AC_MSG_RESULT([no]) + fi + fi + + dnl + dnl Check if required version of MySQL is available + dnl + + + mysql_version_req=ifelse([$1], [], [], [$1]) + + if test "$found_mysql" = "yes" -a -n "$mysql_version_req"; then + + AC_MSG_CHECKING([if MySQL version is >= $mysql_version_req]) + + dnl Decompose required version string of MySQL + dnl and calculate its number representation + mysql_version_req_major=`expr $mysql_version_req : '\([[0-9]]*\)'` + mysql_version_req_minor=`expr $mysql_version_req : '[[0-9]]*\.\([[0-9]]*\)'` + mysql_version_req_micro=`expr $mysql_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'` + if test "x$mysql_version_req_micro" = "x"; then + mysql_version_req_micro="0" + fi + + mysql_version_req_number=`expr $mysql_version_req_major \* 1000000 \ + \+ $mysql_version_req_minor \* 1000 \ + \+ $mysql_version_req_micro` + + dnl Decompose version string of installed MySQL + dnl and calculate its number representation + mysql_version_major=`expr $MYSQL_VERSION : '\([[0-9]]*\)'` + mysql_version_minor=`expr $MYSQL_VERSION : '[[0-9]]*\.\([[0-9]]*\)'` + mysql_version_micro=`expr $MYSQL_VERSION : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'` + if test "x$mysql_version_micro" = "x"; then + mysql_version_micro="0" + fi + + mysql_version_number=`expr $mysql_version_major \* 1000000 \ + \+ $mysql_version_minor \* 1000 \ + \+ $mysql_version_micro` + + mysql_version_check=`expr $mysql_version_number \>\= $mysql_version_req_number` + if test "$mysql_version_check" = "1"; then + AC_MSG_RESULT([yes]) + else + AC_MSG_RESULT([no]) + fi + fi + + AC_SUBST([MYSQL_VERSION]) + AC_SUBST([MYSQL_CFLAGS]) + AC_SUBST([MYSQL_LDFLAGS]) + +dnl Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test "$mysql_version_check" = "1"; then + $2 + : +else + $3 + : +fi + +]) dnl ax_lib_mysql Index: /branches/rel-1-1/psLib/m4/ipp_stdopts.m4 =================================================================== --- /branches/rel-1-1/psLib/m4/ipp_stdopts.m4 (revision 12167) +++ /branches/rel-1-1/psLib/m4/ipp_stdopts.m4 (revision 12167) @@ -0,0 +1,38 @@ + +AC_DEFUN([IPP_STDCFLAGS], +[ + AC_ARG_ENABLE(optimize, + [AS_HELP_STRING(--enable-optimize,enable compiler optimization)], + [AC_MSG_RESULT(compile optimization enabled) + CFLAGS="${CFLAGS=} -pipe -O2 -g -DPS_NO_TRACE"], + [AC_MSG_RESULT([compile optimization disabled]) + if test x"${CFLAGS}" == x; then + CFLAGS="-pipe -O0 -g" + fi + ] + ) +]) + +AC_DEFUN([IPP_STDOPTS], +[ + dnl handle profiler building + AC_ARG_ENABLE(profile, [AS_HELP_STRING(--enable-profile,enable compiler profiler information inclusion)], + [AC_MSG_RESULT(compile optimization enabled) + CFLAGS="${CFLAGS=} -pg -g" + LDFLAGS="${LDFLAGS=} -pg -Wl,--start-group -Wl,-Bstatic"] + ) + + dnl handle path coverage checking + AC_ARG_ENABLE(coverage, + [AS_HELP_STRING(--enable-coverage,enable path coverage checking)], + [AC_MSG_RESULT(path coverage enabled) + CFLAGS="${CFLAGS=} -lgcov -fprofile-arcs -ftest-coverage -pg"] + ) + + dnl turn off trace messages + AC_ARG_ENABLE(trace, + [AS_HELP_STRING(--disable-trace,disable psTrace functionality)], + [AC_MSG_RESULT(psTrace disabled) + CFLAGS="${CFLAGS=} -DPS_NO_TRACE"] + ) +]) Index: /branches/rel-1-1/psLib/pslib-config.in =================================================================== --- /branches/rel-1-1/psLib/pslib-config.in (revision 12167) +++ /branches/rel-1-1/psLib/pslib-config.in (revision 12167) @@ -0,0 +1,92 @@ +#! /bin/sh + +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@/@PACKAGE_NAME@ +top_srcdir=@ABS_SRCDIR@ +@PERL_INSTALLSYTLE@ + +usage() +{ + cat < + + + Robert Daniel DeSonia + robert.desonia@mhpcc.hpc.mil + 1.6 + KDevAutoProject + C + + C + Code + + + . + false + + + + + + src/pslib + default + + + src/pslib + true + executable + + + + optimized + kdevgccoptions + kdevgppoptions + kdevg77options + -O2 -g0 + + + --enable-debug=full + debug + kdevgccoptions + kdevgppoptions + kdevg77options + -O0 -g3 + + + + + + + + + + + + ada + ada_bugs_gcc + bash + bash_bugs + clanlib + w3c-dom-level2-html + fortran_bugs_gcc + gnome1 + gnustep + gtk + gtk_bugs + haskell + haskell_bugs_ghc + java_bugs_gcc + java_bugs_sun + kde2book + libstdc++ + opengl + pascal_bugs_fp + php + php_bugs + perl + perl_bugs + python + python_bugs + qt-kdev3 + ruby + ruby_bugs + sdl + stl + w3c-svg + sw + w3c-uaag10 + wxwidgets_bugs + + + Guide to the Qt Translation Tools + Qt Assistant Manual + Qt Designer Manual + Qt Reference Documentation + qmake User Guide + + + KDE Libraries (Doxygen) + + + + + + + + + + + + + false + false + + + *.o,*.lo,CVS + false + false + + + + + Doxygen Documentation Collection + ${APPNAMELC}.tag + + + + psLib + pslib + PSLIB + Robert Daniel DeSonia + + robert.desonia@mhpcc.hpc.mil + GPL + COPYING + -I/usr/include + -lm + 1.5 + /home/desonia/pslib + + + + + true + true + true + false + true + true + true + 250 + 400 + 250 + + + + set + m_,_ + theValue + true + true + + + + + .h + .cpp + + + + + + + libtool + + + + true + false + false + + + false + true + 10 + + + + true + true + true + true + -C + + Index: /branches/rel-1-1/psLib/pslib.pc.in =================================================================== --- /branches/rel-1-1/psLib/pslib.pc.in (revision 12167) +++ /branches/rel-1-1/psLib/pslib.pc.in (revision 12167) @@ -0,0 +1,11 @@ +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@/@PACKAGE_NAME@ + +Name: @PACKAGE_NAME@ +Description: Pan-STARRS Library +Version: @VERSION@ +Libs: -L${libdir} -lpslib +Libs.private: @PSLIB_LIBS@ +Cflags: -I${includedir} @PSLIB_CFLAGS@ Index: /branches/rel-1-1/psLib/share/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/share/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/share/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +Makefile +Makefile.in +.libs +.deps +psTime.config +psTime.xml +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/share/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/share/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/share/Makefile.am (revision 12167) @@ -0,0 +1,11 @@ +dist_pkgdata_DATA = \ + daily.dat \ + eopc01_1900_2004.dat \ + finals_all.dat \ + tai_utc.dat \ + tab5.2a.dat \ + tab5.2b.dat \ + tab5.2c.dat \ + finals2000A.dat \ + finals_all.dat + Index: /branches/rel-1-1/psLib/share/daily.dat =================================================================== --- /branches/rel-1-1/psLib/share/daily.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/daily.dat (revision 12167) @@ -0,0 +1,188 @@ +# +# Stripped version of finals.daily.orig file +# +# +# Bull A Bull A Bull A Bull B Bull B Bull B +# MJD PM-x PM-y UT1-UTC PM-x PM-y UT1-UTC +# +53403.00 0.089198 0.207773 -0.5218861 0.089220 0.207360 -0.5219040 +53404.00 0.086551 0.206870 -0.5224171 0.086670 0.206850 -0.5224260 +53405.00 0.083583 0.206138 -0.5227683 0.083920 0.206040 -0.5227550 +53406.00 0.081544 0.205866 -0.5229579 0.081570 0.205850 -0.5229780 +53407.00 0.078824 0.205838 -0.5231935 0.078920 0.205580 -0.5231160 +53408.00 0.076009 0.205787 -0.5235614 0.076100 0.205770 -0.5237140 +53409.00 0.073081 0.205511 -0.5240823 0.073150 0.205280 -0.5240730 +53410.00 0.069881 0.205007 -0.5249001 0.070030 0.205020 -0.5248950 +53411.00 0.066804 0.204321 -0.5260474 0.066860 0.204090 -0.5260380 +53412.00 0.064032 0.203564 -0.5274687 0.064120 0.203610 -0.5274600 +53413.00 0.061534 0.203227 -0.5290349 0.061670 0.203150 -0.5290210 +53414.00 0.059261 0.203103 -0.5305665 0.059180 0.202910 -0.5305800 +53415.00 0.057167 0.203188 -0.5319092 0.057480 0.203020 -0.5318810 +53416.00 0.054644 0.203355 -0.5329893 0.054560 0.203270 -0.5329820 +53417.00 0.051723 0.203158 -0.5337631 0.052100 0.202990 -0.5337520 +53418.00 0.048514 0.202982 -0.5342942 0.048250 0.202830 -0.5342930 +53419.00 0.045299 0.203112 -0.5347071 0.045910 0.203060 -0.5347030 +53420.00 0.042672 0.203749 -0.5351354 0.042380 0.203710 -0.5351220 +53421.00 0.040104 0.204528 -0.5356628 0.040510 0.204360 -0.5356850 +53422.00 0.037711 0.205249 -0.5363046 0.037570 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/branches/rel-1-1/psLib/share/eopc01_1900_2004.dat =================================================================== --- /branches/rel-1-1/psLib/share/eopc01_1900_2004.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/eopc01_1900_2004.dat (revision 12167) @@ -0,0 +1,2103 @@ +# eopc01_1900_2004.dat +# +# This file comes from http://hpiers.obspm.fr/eoppc/eop/eopc01/eopc01.1900-2004. See readme.eopc01 (located +# in the psLib/data directory) for details. +# +# @author Ross Harman, MHPCC +# +# @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +# @date $Date: 2006-09-23 02:20:17 $ +# +# +# Date PM-x PM-y UT1-UTC +# (year) (arcsec) (arcsec) (sec) +# psF64 psF64 psF64 psF64 + 1900.00 -.212818 -.097229 .0000000 + 1900.05 -.047461 -.065631 .0000000 + 1900.10 -.112006 -.040467 .0000000 + 1900.15 -.076710 -.009674 .0000000 + 1900.20 -.099850 -.066660 .0000000 + 1900.25 -.131173 -.072076 .0000000 + 1900.30 -.087390 -.089427 .0000000 + 1900.35 -.164078 -.131034 .0000000 + 1900.40 -.151407 -.105838 .0000000 + 1900.45 -.143764 -.179125 .0000000 + 1900.50 -.124341 -.105747 .0000000 + 1900.55 -.206229 -.144555 .0000000 + 1900.60 -.192711 -.095563 .0000000 + 1900.65 -.190299 -.067717 .0000000 + 1900.70 -.135718 -.081480 .0000000 + 1900.75 -.153807 .030568 .0000000 + 1900.80 -.173818 .001034 .0000000 + 1900.85 -.257716 -.006499 .0000000 + 1900.90 -.209085 .046511 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53674.00 + 511 1 53675.00 + 511 2 53676.00 + 511 3 53677.00 Index: /branches/rel-1-1/psLib/share/iers_corr.dat =================================================================== --- /branches/rel-1-1/psLib/share/iers_corr.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/iers_corr.dat (revision 12167) @@ -0,0 +1,11658 @@ +# +# Stripped version of finals.all.orig file +# +# +# Bull A Bull A Bull B Bull B +# MJD dX dY dX dY +# +41684.00 44.969 2.839 0.000 0.000 +41685.00 45.005 2.762 0.000 0.000 +41686.00 45.122 2.851 0.000 0.000 +41687.00 45.344 3.02 0.000 0.000 +41688.00 45.623 3.115 0.000 0.000 +41689.00 45.812 3.086 0.000 0.000 +41690.00 45.804 3.014 0.000 0.000 +41691.00 45.647 2.993 0.000 0.000 +41692.00 45.466 3.049 0.000 0.000 +41693.00 45.326 3.164 0.000 0.000 +41694.00 45.177 3.328 0.000 0.000 +41695.00 44.931 3.504 0.000 0.000 +41696.00 44.607 3.585 0.000 0.000 +41697.00 44.381 3.456 0.000 0.000 +41698.00 44.444 3.159 0.000 0.000 +41699.00 44.789 2.911 0.000 0.000 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+53101.00 -52.215 -3.846 -52.500 -4.000 +53102.00 -52.703 -3.878 -52.700 -4.100 +53103.00 -53.187 -4.088 -53.000 -4.100 +53104.00 -53.342 -4.317 -53.300 -4.200 +53105.00 -53.112 -4.46 -53.200 -4.200 +53106.00 -52.691 -4.524 -52.800 -4.300 +53107.00 -52.262 -4.562 -52.300 -4.400 +53108.00 -51.886 -4.603 -51.800 -4.500 +53109.00 -51.56 -4.641 -51.500 -4.600 +53110.00 -51.317 -4.643 -51.300 -4.500 +53111.00 -51.236 -4.559 -51.200 -4.400 +53112.00 -51.344 -4.359 -51.200 -4.200 +53113.00 -51.543 -4.089 -51.300 -3.900 +53114.00 -51.689 -3.888 -51.300 -3.800 +53115.00 -51.74 -3.894 -51.300 -3.700 +53116.00 -51.66 -4.075 -51.300 -3.900 +53117.00 -51.707 -4.367 -51.200 -4.100 +53118.00 -51.718 -4.562 -51.200 -4.400 +53119.00 -51.588 -4.654 -51.200 -4.700 +53120.00 -51.481 -4.778 -51.200 -4.900 +53121.00 -51.281 -4.997 -51.100 -5.100 +53122.00 -50.896 -5.203 -51.000 -5.200 +53123.00 -50.413 -5.284 -50.700 -5.200 +53124.00 -50.16 -5.302 -50.400 -5.300 +53125.00 -50.344 -5.381 -50.300 -5.200 +53126.00 -50.751 -5.461 -50.300 -5.100 +53127.00 -51.038 -5.319 -50.500 -4.800 +53128.00 -51.22 -4.895 -51.000 -4.600 +53129.00 -51.608 -4.458 -51.600 -4.500 +53130.00 -52.325 -4.36 -52.200 -4.500 +53131.00 -52.882 -4.611 -52.600 -4.700 +53132.00 -52.928 -4.982 -52.800 -5.000 +53133.00 -52.484 -5.252 -52.700 -5.200 +53134.00 -51.911 -5.4 -52.300 -5.400 +53135.00 -51.517 -5.483 -51.900 -5.500 +53136.00 -51.348 -5.489 -51.400 -5.500 +53137.00 -51.294 -5.393 -51.100 -5.400 +53138.00 -51.244 -5.179 -51.000 -5.200 +53139.00 -51.228 -4.938 -51.100 -4.900 +53140.00 -51.342 -4.688 -51.400 -4.500 +53141.00 -51.607 -4.428 -51.700 -4.300 +53142.00 -51.895 -4.242 -52.000 -4.200 +53143.00 -52.053 -4.287 -52.100 -4.300 +53144.00 -52.067 -4.613 -52.100 -4.600 +53145.00 -52.023 -5.047 -52.100 -5.000 +53146.00 -51.996 -5.335 -52.200 -5.300 +53147.00 -51.986 -5.396 -52.400 -5.400 +53148.00 -52.101 -5.402 -52.600 -5.400 +53149.00 -52.215 -5.476 -52.500 -5.400 +53150.00 -52.133 -5.552 -52.100 -5.400 +53151.00 -51.802 -5.497 -51.500 -5.600 +53152.00 -51.502 -5.362 -51.100 -5.600 +53153.00 -51.572 -5.327 -51.200 -5.500 +53154.00 -51.996 -5.346 -51.600 -5.200 +53155.00 -52.507 -5.277 -52.200 -4.900 +53156.00 -52.991 -4.908 -53.000 -4.600 +53157.00 -53.601 -4.453 -53.800 -4.300 +53158.00 -54.338 -4.292 -54.300 -4.200 +53159.00 -54.846 -4.528 -54.600 -4.400 +53160.00 -54.789 -4.911 -54.500 -4.700 +53161.00 -54.246 -5.194 -54.400 -5.000 +53162.00 -53.616 -5.367 -54.200 -5.100 +53163.00 -53.236 -5.497 -54.000 -5.200 +53164.00 -53.205 -5.507 -53.700 -5.300 +53165.00 -53.438 -5.272 -53.300 -5.400 +53166.00 -53.752 -4.856 -53.400 -5.100 +53167.00 -53.995 -4.488 -53.700 -4.600 +53168.00 -54.173 -4.302 -53.900 -4.200 +53169.00 -54.418 -4.242 -54.000 -4.000 +53170.00 -54.761 -4.239 -54.100 -4.100 +53171.00 -55.061 -4.37 -54.400 -4.300 +53172.00 -55.187 -4.723 -55.000 -4.500 +53173.00 -55.181 -5.181 -55.400 -4.900 +53174.00 -55.174 -5.476 -55.300 -5.300 +53175.00 -55.25 -5.462 -55.300 -5.400 +53176.00 -55.425 -5.272 -55.300 -5.400 +53177.00 -55.643 -5.124 -55.300 -5.300 +53178.00 -55.762 -5.064 -55.200 -5.100 +53179.00 -55.669 -4.978 -55.200 -5.000 +53180.00 -55.478 -4.827 -55.200 -5.000 +53181.00 -55.476 -4.719 -55.500 -4.900 +53182.00 -55.825 -4.72 -55.900 -4.800 +53183.00 -56.434 -4.706 -56.500 -4.500 +53184.00 -57.147 -4.546 -57.100 -4.300 +53185.00 -57.873 -4.337 -57.700 -4.200 +53186.00 -58.474 -4.317 -58.000 -4.300 +53187.00 -58.723 -4.542 -58.100 -4.500 +53188.00 -58.525 -4.803 -58.000 -4.800 +53189.00 -58.071 -4.925 -57.900 -5.100 +53190.00 -57.656 -4.981 -57.700 -5.200 +53191.00 -57.444 -5.093 -57.700 -5.200 +53192.00 -57.499 -5.165 -57.700 -5.100 +53193.00 -57.852 -4.989 -57.900 -4.800 +53194.00 -58.406 -4.582 -58.100 -4.500 +53195.00 -58.912 -4.237 -58.300 -4.200 +53196.00 -59.201 -4.182 -58.600 -4.000 +53197.00 -59.368 -4.343 -59.000 -4.000 +53198.00 -59.584 -4.515 -59.300 -4.200 +53199.00 -59.834 -4.655 -59.600 -4.500 +53200.00 -59.973 -4.874 -59.800 -4.900 +53201.00 -59.978 -5.185 -59.800 -5.200 +53202.00 -59.958 -5.409 -59.800 -5.400 +53203.00 -59.985 -5.367 -59.800 -5.400 +53204.00 -60.037 -5.103 -59.900 -5.200 +53205.00 -60.095 -4.833 -59.900 -4.900 +53206.00 -60.153 -4.704 -59.900 -4.700 +53207.00 -60.166 -4.686 -59.900 -4.600 +53208.00 -60.113 -4.669 -59.900 -4.600 +53209.00 -60.105 -4.615 -60.200 -4.600 +53210.00 -60.32 -4.562 -60.600 -4.600 +53211.00 -60.829 -4.53 -61.200 -4.500 +53212.00 -61.514 -4.513 -61.700 -4.400 +53213.00 -62.137 -4.549 -62.100 -4.300 +53214.00 -62.446 -4.685 -62.000 -4.500 +53215.00 -62.337 -4.863 -61.800 -4.700 +53216.00 -61.963 -4.924 -61.400 -4.900 +53217.00 -61.633 -4.8 -61.200 -5.100 +53218.00 -61.521 -4.645 -61.200 -5.100 +53219.00 -61.553 -4.644 -61.300 -5.000 +53220.00 -61.649 -4.753 0.000 0.000 +53221.00 -61.898 -4.747 0.000 0.000 +53222.00 -62.389 -4.551 0.000 0.000 +53223.00 -62.967 -4.364 0.000 0.000 +53224.00 -63.362 -4.403 0.000 0.000 +53225.00 -63.499 -4.619 0.000 0.000 +53226.00 -63.512 -4.789 0.000 0.000 +53227.00 -63.499 -4.82 0.000 0.000 +53228.00 -63.429 -4.835 0.000 0.000 +53229.00 -63.295 -4.959 0.000 0.000 +53230.00 -63.171 -5.123 0.000 0.000 +53231.00 -63.092 -5.149 0.000 0.000 +53232.00 -63.011 -4.97 0.000 0.000 +53233.00 -62.912 -4.71 0.000 0.000 +53234.00 -62.857 -4.55 0.000 0.000 +53235.00 -62.883 -4.566 0.000 0.000 +53236.00 -62.94 -4.674 0.000 0.000 +53237.00 -63.005 -4.739 0.000 0.000 +53238.00 -63.161 -4.703 0.000 0.000 +53239.00 -63.495 -4.622 0.000 0.000 +53240.00 -63.939 -4.597 0.000 0.000 +53241.00 -64.263 -4.676 0.000 0.000 +53242.00 -64.246 -4.815 0.000 0.000 +53243.00 -63.877 -4.893 0.000 0.000 +53244.00 -63.406 -4.799 0.000 0.000 +53245.00 -63.172 -4.511 0.000 0.000 +53246.00 -63.216 -4.226 0.000 0.000 +53247.00 -63.377 -4.094 0.000 0.000 +53248.00 -63.473 -4.134 0.000 0.000 +53249.00 -63.565 -4.206 0.000 0.000 +53250.00 -63.844 -4.21 0.000 0.000 +53251.00 -64.326 -4.205 0.000 0.000 +53252.00 -64.786 -4.298 0.000 0.000 +53253.00 -64.991 -4.446 0.000 0.000 +53254.00 -64.896 -4.501 0.000 0.000 +53255.00 -64.606 -4.416 0.000 0.000 +53256.00 -64.24 -4.329 0.000 0.000 +53257.00 -63.885 -4.385 0.000 0.000 +53258.00 -63.605 -4.55 0.000 0.000 +53259.00 -63.419 -4.649 0.000 0.000 +53260.00 -63.312 -4.56 0.000 0.000 +53261.00 -63.272 -4.327 0.000 0.000 +53262.00 -63.307 -4.111 0.000 0.000 +53263.00 -63.406 -4.047 0.000 0.000 +53264.00 -63.522 -4.143 0.000 0.000 +53265.00 -63.631 -4.283 0.000 0.000 +53266.00 -63.761 -4.34 0.000 0.000 +53267.00 -63.935 -4.296 0.000 0.000 +53268.00 -64.084 -4.237 0.000 0.000 +53269.00 -64.063 -4.241 0.000 0.000 +53270.00 -63.767 -4.287 0.000 0.000 +53271.00 -63.254 -4.291 0.000 0.000 +53272.00 -62.74 -4.187 0.000 0.000 +53273.00 -62.445 -3.986 0.000 0.000 +53274.00 -62.421 -3.759 0.000 0.000 +53275.00 -62.529 -3.584 0.000 0.000 +53276.00 -62.603 -3.495 0.000 0.000 +53277.00 -62.624 -3.476 0.000 0.000 +53278.00 -62.72 -3.511 0.000 0.000 +53279.00 -62.992 -3.612 0.000 0.000 +53280.00 -63.35 -3.771 0.000 0.000 +53281.00 -63.56 -3.904 0.000 0.000 +53282.00 -63.441 -3.908 0.000 0.000 +53283.00 -63.02 -3.802 0.000 0.000 +53284.00 -62.477 -3.737 0.000 0.000 +53285.00 -61.967 -3.823 0.000 0.000 +53286.00 -61.539 -3.988 0.000 0.000 +53287.00 -61.222 -4.054 0.000 0.000 +53288.00 -61.099 -3.928 0.000 0.000 +53289.00 -61.22 -3.664 0.000 0.000 +53290.00 -61.49 -3.385 0.000 0.000 +53291.00 -61.727 -3.195 0.000 0.000 +53292.00 -61.835 -3.154 0.000 0.000 +53293.00 -61.854 -3.251 0.000 0.000 +53294.00 -61.852 -3.399 0.000 0.000 +53295.00 -61.826 -3.484 0.000 0.000 +53296.00 -61.727 -3.468 0.000 0.000 +53297.00 -61.512 -3.407 0.000 0.000 +53298.00 -61.163 -3.369 0.000 0.000 +53299.00 -60.705 -3.358 0.000 0.000 +53300.00 -60.231 -3.329 0.000 0.000 +53301.00 -59.867 -3.247 0.000 0.000 +53302.00 -59.696 -3.112 0.000 0.000 +53303.00 -59.701 -2.94 0.000 0.000 +53304.00 -59.782 -2.749 0.000 0.000 +53305.00 -59.837 -2.585 0.000 0.000 +53306.00 -59.839 -2.523 0.000 0.000 +53307.00 -59.858 -2.623 0.000 0.000 +53308.00 -59.949 -2.851 0.000 0.000 +53309.00 -60.031 -3.063 0.000 0.000 +53310.00 -59.933 -3.127 0.000 0.000 +53311.00 -59.593 -3.064 0.000 0.000 +53312.00 -59.12 -3.029 0.000 0.000 +53313.00 -58.635 -3.108 0.000 0.000 +53314.00 -58.155 -3.196 0.000 0.000 +53315.00 -57.729 -3.129 0.000 0.000 +53316.00 -57.552 -2.892 0.000 0.000 +53317.00 -57.772 -2.612 0.000 0.000 +53318.00 -58.248 -2.372 0.000 0.000 +53319.00 -58.656 -2.159 0.000 0.000 +53320.00 -58.83 -1.987 0.000 0.000 +53321.00 -58.84 -1.96 0.000 0.000 +53322.00 -58.763 -2.124 0.000 0.000 +53323.00 -58.573 -2.343 0.000 0.000 +53324.00 -58.275 -2.425 0.000 0.000 +53325.00 -57.988 -2.343 0.000 0.000 +53326.00 -57.796 -2.241 0.000 0.000 +53327.00 -57.631 -2.22 0.000 0.000 +53328.00 -57.402 -2.228 0.000 0.000 +53329.00 -57.147 -2.156 0.000 0.000 +53330.00 -56.995 -1.986 0.000 0.000 +53331.00 -57.018 -1.781 0.000 0.000 +53332.00 -57.155 -1.586 0.000 0.000 +53333.00 -57.259 -1.417 0.000 0.000 +53334.00 -57.213 -1.326 0.000 0.000 Index: /branches/rel-1-1/psLib/share/readme.eopc01 =================================================================== --- /branches/rel-1-1/psLib/share/readme.eopc01 (revision 12167) +++ /branches/rel-1-1/psLib/share/readme.eopc01 (revision 12167) @@ -0,0 +1,82 @@ +This table comes from: + + http://hpiers.obspm.fr/eoppc/eop/eopc01/eopc01.1900-2004 + +As referenced in the Pan-STARRS ADD + + + + EOP(IERS) C 01 + ---------------------------- + + EOP(IERS) C 01 is a series of the earth Orientation Parameters given + in the 1997 IERS system at 0.1 year interval (1846 - 1889) and 0.05 year + interval (1890 - now). It is regularly recomputed to take advantage on one + hand of the improvement of the various individual contributions and in the + other hand of the refinement of the analyses procedures. This series is the + basis of the IERS system. + + + EOP(IERS) C 01 is based on the following data: + + + 1993 - now : IERS solution of x, y, UT1-UTC, LOD, dPsi, dEpsilon (normal points), + based on VLBI, LLR, GPS and SLR. + + 1980 - 1992 : IERS solution of x, y, UT1-UTC, dPsi, dEpsilon (normal points), + based on VLBI, LLR, GPS (from 1992), and SLR. + + 1962 - 1979 : IERS and BIH solutions, giving x, y, UT1-UTC (normal points). + Space techniques are introduced starting with 1969 (LLR: UT) + and 1972 (Doppler: polar motion). + + 1900 - 1961 : Vondrak(1995), Solution derived from optical astrometry + analyses the series give polar motion, celestial pole offsets + and Universal Time (since 1956). + + + + 1846 - 1899 : + + The solution derived by L.V. Rikhlova (Fedorov et al., 1976) + from three series of absolute declination programs (Pulkovo, + Greenwhich, Washington). The frequency band of the variations + kept encompasses only the annual and Chandler terms. The y + coordinate of the pole is missing from 1858.9 through 1860.9. + + + PRECISION AND ACCURACY + + The individual values are accompanied by uncertainties which attempt to + reflect their quality. For the IERS/BIH solutions, they are derived from the + scattering of the independant measurements contributing to each normal point, + with added variance taking into account possible systematic errors. For the + earlier period, they are based on the estimations given by Fedorov et al. + (1976), scaled to match the agreement woth the IERS/BIH solution over + 1962-1968. In addition some isolated outliers are deweighted (uncertainty + multiplied by 3). + + The following remarks can be made concerning the drift and the annual term + before 1962: + + Trend: as a result of the Fedorov et al. treatment, any drift in polar + motion existing before 1900 is ignored in the series. For the period + starting with 1900, although no external evidence is available for + the pre-1972 polar motion, it should be mentionned that the low + frequency spectrum of polar motion both before and after the advent + of space techniques (giving the possibility of cross-checks) is that + pf random walk at a similar level. + + Annual term: it is influenced by errors in nutation and local seasonal errors. + Comparisons of the Fedorov et al. solution with the IERS/BIH one over + 1962 - 1968 suggest that the amplitude of the annual term is accurate + to +/- 0.03" over 1900 - 1962. + + REFERENCES + + - Fedorov,E.P., Korsun,A.A, Mayor,S.P., Pantschenko,N.I., Tarady,V.K., and + Yatskiv,Y.S., 1972: Dvizhenie polyusa Zemli s 1890.0 po 1969.0. Naukova + Dumka, Kiev. [English translation of the text available]. + - Vondrak J., Ron C., Pesek I., Cepek A., 1995, Astron. and Astrophys. + 297,899-906. + - IERS Annual reports Index: /branches/rel-1-1/psLib/share/readme.ser7 =================================================================== --- /branches/rel-1-1/psLib/share/readme.ser7 (revision 12167) +++ /branches/rel-1-1/psLib/share/readme.ser7 (revision 12167) @@ -0,0 +1,7 @@ +This file comes from the site: + +http://maia.usno.navy.mil (Click on General Information about Earth Orientation) + +This file may also be directly downloaded from: + +ftp://maia.usno.navy.mil/ser7/ser7.dat Index: /branches/rel-1-1/psLib/share/readme.tai_utc =================================================================== --- /branches/rel-1-1/psLib/share/readme.tai_utc (revision 12167) +++ /branches/rel-1-1/psLib/share/readme.tai_utc (revision 12167) @@ -0,0 +1,7 @@ +This file comes from the site: + +http://maia.usno.navy.mil (Click on table of leap seconds since 1961) + +This file may also be directly downloaded from: + +ftp://maia.usno.navy.mil/ser7/tai-utc.dat Index: /branches/rel-1-1/psLib/share/ser7.dat =================================================================== --- /branches/rel-1-1/psLib/share/ser7.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/ser7.dat (revision 12167) @@ -0,0 +1,380 @@ +# ser7.dat +# +# This file comes from http://maia.usno.navy.mil (Click on General Information about Earth Orientation). This +# file may also be directly downloaded from ftp://maia.usno.navy.mil/ser7/ser7.dat. See readme.ser7 (located +# in the psLib/data directory) for details. +# +# @author Ross Harman, MHPCC +# +# @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +# @date $Date: 2006-09-23 02:20:18 $ +# +# +# MJD PM-x PM-y UT1-UTC +# (days) (arcsec) (arcsec) (sec) +# psF64 psF64 psF64 psF64 + 53244 0.1377 0.5027 -0.45210 + 53245 0.1394 0.5015 -0.45190 + 53246 0.1411 0.5002 -0.45197 + 53247 0.1429 0.4989 -0.45234 + 53248 0.1447 0.4976 -0.45293 + 53249 0.1465 0.4962 -0.45361 + 53250 0.1484 0.4948 -0.45424 + 53251 0.1503 0.4934 -0.45476 + 53252 0.1521 0.4920 -0.45512 + 53253 0.1540 0.4905 -0.45530 + 53254 0.1558 0.4890 -0.45531 + 53255 0.1577 0.4874 -0.45519 + 53256 0.1595 0.4859 -0.45497 + 53257 0.1613 0.4843 -0.45474 + 53258 0.1631 0.4827 -0.45458 + 53259 0.1649 0.4810 -0.45456 + 53260 0.1667 0.4794 -0.45474 + 53261 0.1684 0.4777 -0.45514 + 53262 0.1701 0.4760 -0.45578 + 53263 0.1717 0.4742 -0.45660 + 53264 0.1734 0.4725 -0.45754 + 53265 0.1750 0.4707 -0.45849 + 53266 0.1765 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(revision 12167) @@ -0,0 +1,475 @@ + + ********************************************************************** + * * + * I E R S B U L L E T I N - A * + * * + * Rapid Service/Prediction of Earth Orientation * + ********************************************************************** + 26 August 2004 Vol. XVII No. 034 + ______________________________________________________________________ + GENERAL INFORMATION: + To receive this information electronically, contact: + ser7@maia.usno.navy.mil or use http://maia.usno.navy.mil/ + MJD = Julian Date - 2 400 000.5 days + UT2-UT1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) + - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) + where pi = 3.14159265... and T is the date in Besselian years. + TT = TAI + 32.184 seconds + DUT1= (UT1-UTC) transmitted with time signals + = -0.5 seconds beginning 29 April 2004 at 0000 UTC + Beginning 1 January 1999: + TAI-UTC(BIPM) = 32.000 000 seconds + ********************************************************************** + * No leap second will be introduced * + * in UTC on 31 December 2004. * + * Bulletin A is now compliant with IAU 2000 resolutions * + * See notice at the end of this Bulletin A * + ********************************************************************** + ________________________________________________________________________ + The contributed observations used in the preparation of this Bulletin + are available at ftp://maia.usno.navy.mil/bulla-data.html. The + contributed analysis results are based on data from Very Long Baseline + Interferometry (VLBI), Satellite Laser Ranging (SLR), the Global + Positioning System (GPS) satellites, Lunar Laser Ranging (LLR), and + meteorological predictions of variations in Atmospheric Angular + Momentum (AAM). + ________________________________________________________________________ + + COMBINED EARTH ORIENTATION PARAMETERS: + + IERS Rapid Service + MJD x error y error UT1-UTC error + " " " " s s + 4 8 20 53237 .12423 .00003 .51109 .00006 -.451871 .000012 + 4 8 21 53238 .12644 .00003 .51031 .00005 -.452406 .000014 + 4 8 22 53239 .12829 .00003 .50925 .00005 -.452813 .000014 + 4 8 23 53240 .13014 .00002 .50785 .00004 -.453011 .000012 + 4 8 24 53241 .13227 .00002 .50627 .00004 -.452994 .000013 + 4 8 25 53242 .13439 .00002 .50488 .00003 -.452786 .000012 + 4 8 26 53243 .13604 .00002 .50376 .00003 -.452446 .000011 + + _______________________________________________________________________ + + PREDICTIONS: + The following formulas will not reproduce the predictions given below, + but may be used to extend the predictions beyond the end of this table. + + x = .0530 + .0660 cos A - .0075 sin A + .0182 cos C + .1564 sin C + y = .3501 - .0070 cos A - .0542 sin A + .1564 cos C - .0182 sin C + UT1-UTC = -.4952 - .00023 (MJD - 53248) - (UT2-UT1) + + where A = 2*pi*(MJD-53243)/365.25 and C = 2*pi*(MJD-53243)/435. + + TAI-UTC(MJD 53244) = 32.0 + The accuracy may be estimated from the expressions: + S x,y = 0.0042 (MJD-53243)**0.28 S t = 0.0003 (MJD-53248)**0.75 + Estimated accuracies are: Predictions 10 d 20 d 30 d 40 d + Polar coord's 0.004 0.006 0.009 0.011 + UT1-UTC 0.0017 0.0028 0.0039 0.0048 + + MJD x(arcsec) y(arcsec) UT1-UTC(sec) + 2004 8 27 53244 0.1377 0.5027 -0.45210 + 2004 8 28 53245 0.1394 0.5015 -0.45190 + 2004 8 29 53246 0.1411 0.5002 -0.45197 + 2004 8 30 53247 0.1429 0.4989 -0.45234 + 2004 8 31 53248 0.1447 0.4976 -0.45293 + 2004 9 1 53249 0.1465 0.4962 -0.45361 + 2004 9 2 53250 0.1484 0.4948 -0.45424 + 2004 9 3 53251 0.1503 0.4934 -0.45476 + 2004 9 4 53252 0.1521 0.4920 -0.45512 + 2004 9 5 53253 0.1540 0.4905 -0.45530 + 2004 9 6 53254 0.1558 0.4890 -0.45531 + 2004 9 7 53255 0.1577 0.4874 -0.45519 + 2004 9 8 53256 0.1595 0.4859 -0.45497 + 2004 9 9 53257 0.1613 0.4843 -0.45474 + 2004 9 10 53258 0.1631 0.4827 -0.45458 + 2004 9 11 53259 0.1649 0.4810 -0.45456 + 2004 9 12 53260 0.1667 0.4794 -0.45474 + 2004 9 13 53261 0.1684 0.4777 -0.45514 + 2004 9 14 53262 0.1701 0.4760 -0.45578 + 2004 9 15 53263 0.1717 0.4742 -0.45660 + 2004 9 16 53264 0.1734 0.4725 -0.45754 + 2004 9 17 53265 0.1750 0.4707 -0.45849 + 2004 9 18 53266 0.1765 0.4689 -0.45932 + 2004 9 19 53267 0.1780 0.4671 -0.45996 + 2004 9 20 53268 0.1795 0.4652 -0.46036 + 2004 9 21 53269 0.1810 0.4634 -0.46055 + 2004 9 22 53270 0.1824 0.4615 -0.46061 + 2004 9 23 53271 0.1838 0.4596 -0.46068 + 2004 9 24 53272 0.1852 0.4576 -0.46086 + 2004 9 25 53273 0.1865 0.4557 -0.46126 + 2004 9 26 53274 0.1878 0.4537 -0.46192 + 2004 9 27 53275 0.1890 0.4517 -0.46280 + 2004 9 28 53276 0.1902 0.4497 -0.46382 + 2004 9 29 53277 0.1914 0.4477 -0.46486 + 2004 9 30 53278 0.1925 0.4457 -0.46581 + 2004 10 1 53279 0.1936 0.4436 -0.46658 + 2004 10 2 53280 0.1946 0.4415 -0.46715 + 2004 10 3 53281 0.1956 0.4394 -0.46750 + 2004 10 4 53282 0.1966 0.4373 -0.46766 + 2004 10 5 53283 0.1976 0.4352 -0.46772 + 2004 10 6 53284 0.1985 0.4331 -0.46773 + 2004 10 7 53285 0.1993 0.4309 -0.46778 + 2004 10 8 53286 0.2001 0.4288 -0.46795 + 2004 10 9 53287 0.2009 0.4266 -0.46830 + 2004 10 10 53288 0.2017 0.4244 -0.46887 + 2004 10 11 53289 0.2024 0.4222 -0.46968 + 2004 10 12 53290 0.2031 0.4200 -0.47071 + 2004 10 13 53291 0.2037 0.4178 -0.47191 + 2004 10 14 53292 0.2043 0.4155 -0.47317 + 2004 10 15 53293 0.2049 0.4133 -0.47435 + 2004 10 16 53294 0.2054 0.4111 -0.47536 + 2004 10 17 53295 0.2059 0.4088 -0.47610 + 2004 10 18 53296 0.2063 0.4065 -0.47659 + 2004 10 19 53297 0.2067 0.4042 -0.47691 + 2004 10 20 53298 0.2071 0.4020 -0.47718 + 2004 10 21 53299 0.2075 0.3997 -0.47755 + 2004 10 22 53300 0.2078 0.3974 -0.47811 + 2004 10 23 53301 0.2080 0.3951 -0.47893 + 2004 10 24 53302 0.2083 0.3928 -0.47998 + 2004 10 25 53303 0.2085 0.3905 -0.48119 + 2004 10 26 53304 0.2086 0.3881 -0.48247 + 2004 10 27 53305 0.2088 0.3858 -0.48369 + 2004 10 28 53306 0.2089 0.3835 -0.48477 + 2004 10 29 53307 0.2089 0.3812 -0.48565 + 2004 10 30 53308 0.2090 0.3789 -0.48630 + 2004 10 31 53309 0.2089 0.3765 -0.48674 + 2004 11 1 53310 0.2089 0.3742 -0.48701 + 2004 11 2 53311 0.2088 0.3719 -0.48718 + 2004 11 3 53312 0.2088 0.3696 -0.48732 + 2004 11 4 53313 0.2086 0.3672 -0.48753 + 2004 11 5 53314 0.2085 0.3649 -0.48785 + 2004 11 6 53315 0.2082 0.3626 -0.48835 + 2004 11 7 53316 0.2080 0.3603 -0.48906 + 2004 11 8 53317 0.2077 0.3579 -0.48997 + 2004 11 9 53318 0.2074 0.3556 -0.49106 + 2004 11 10 53319 0.2071 0.3533 -0.49226 + 2004 11 11 53320 0.2067 0.3510 -0.49344 + 2004 11 12 53321 0.2063 0.3487 -0.49449 + 2004 11 13 53322 0.2059 0.3464 -0.49531 + 2004 11 14 53323 0.2054 0.3441 -0.49585 + 2004 11 15 53324 0.2049 0.3418 -0.49618 + 2004 11 16 53325 0.2044 0.3396 -0.49639 + 2004 11 17 53326 0.2038 0.3373 -0.49664 + 2004 11 18 53327 0.2032 0.3350 -0.49705 + 2004 11 19 53328 0.2026 0.3328 -0.49769 + 2004 11 20 53329 0.2020 0.3305 -0.49854 + 2004 11 21 53330 0.2013 0.3283 -0.49953 + 2004 11 22 53331 0.2006 0.3261 -0.50058 + 2004 11 23 53332 0.1999 0.3239 -0.50158 + 2004 11 24 53333 0.1991 0.3217 -0.50243 + 2004 11 25 53334 0.1983 0.3195 -0.50308 + 2004 11 26 53335 0.1975 0.3173 -0.50350 + 2004 11 27 53336 0.1967 0.3151 -0.50369 + 2004 11 28 53337 0.1958 0.3130 -0.50370 + 2004 11 29 53338 0.1949 0.3108 -0.50358 + 2004 11 30 53339 0.1940 0.3087 -0.50342 + 2004 12 1 53340 0.1931 0.3066 -0.50329 + 2004 12 2 53341 0.1921 0.3045 -0.50327 + 2004 12 3 53342 0.1911 0.3024 -0.50340 + 2004 12 4 53343 0.1901 0.3004 -0.50372 + 2004 12 5 53344 0.1890 0.2983 -0.50423 + 2004 12 6 53345 0.1880 0.2963 -0.50493 + 2004 12 7 53346 0.1869 0.2943 -0.50574 + 2004 12 8 53347 0.1858 0.2923 -0.50660 + 2004 12 9 53348 0.1846 0.2903 -0.50739 + 2004 12 10 53349 0.1835 0.2883 -0.50808 + 2004 12 11 53350 0.1823 0.2864 -0.50851 + 2004 12 12 53351 0.1811 0.2844 -0.50870 + 2004 12 13 53352 0.1799 0.2825 -0.50874 + 2004 12 14 53353 0.1786 0.2807 -0.50875 + 2004 12 15 53354 0.1773 0.2788 -0.50890 + 2004 12 16 53355 0.1760 0.2769 -0.50927 + 2004 12 17 53356 0.1747 0.2751 -0.50987 + 2004 12 18 53357 0.1734 0.2733 -0.51064 + 2004 12 19 53358 0.1720 0.2715 -0.51148 + 2004 12 20 53359 0.1707 0.2698 -0.51228 + 2004 12 21 53360 0.1693 0.2680 -0.51295 + 2004 12 22 53361 0.1679 0.2663 -0.51342 + 2004 12 23 53362 0.1664 0.2646 -0.51367 + 2004 12 24 53363 0.1650 0.2629 -0.51371 + 2004 12 25 53364 0.1635 0.2613 -0.51357 + 2004 12 26 53365 0.1620 0.2596 -0.51330 + 2004 12 27 53366 0.1605 0.2580 -0.51298 + 2004 12 28 53367 0.1590 0.2565 -0.51268 + 2004 12 29 53368 0.1575 0.2549 -0.51247 + 2004 12 30 53369 0.1559 0.2534 -0.51241 + 2004 12 31 53370 0.1543 0.2519 -0.51253 + 2005 1 1 53371 0.1528 0.2504 -0.51283 + 2005 1 2 53372 0.1511 0.2489 -0.51331 + 2005 1 3 53373 0.1495 0.2475 -0.51391 + 2005 1 4 53374 0.1479 0.2461 -0.51458 + 2005 1 5 53375 0.1463 0.2447 -0.51522 + 2005 1 6 53376 0.1446 0.2434 -0.51574 + 2005 1 7 53377 0.1429 0.2420 -0.51605 + 2005 1 8 53378 0.1412 0.2407 -0.51614 + 2005 1 9 53379 0.1395 0.2395 -0.51605 + 2005 1 10 53380 0.1378 0.2382 -0.51590 + 2005 1 11 53381 0.1361 0.2370 -0.51585 + 2005 1 12 53382 0.1344 0.2358 -0.51603 + 2005 1 13 53383 0.1326 0.2347 -0.51648 + 2005 1 14 53384 0.1308 0.2335 -0.51717 + 2005 1 15 53385 0.1291 0.2324 -0.51800 + 2005 1 16 53386 0.1273 0.2313 -0.51881 + 2005 1 17 53387 0.1255 0.2303 -0.51951 + 2005 1 18 53388 0.1237 0.2293 -0.52000 + 2005 1 19 53389 0.1219 0.2283 -0.52027 + 2005 1 20 53390 0.1200 0.2273 -0.52032 + 2005 1 21 53391 0.1182 0.2264 -0.52018 + 2005 1 22 53392 0.1164 0.2255 -0.51992 + 2005 1 23 53393 0.1145 0.2246 -0.51959 + 2005 1 24 53394 0.1126 0.2237 -0.51928 + 2005 1 25 53395 0.1108 0.2229 -0.51905 + 2005 1 26 53396 0.1089 0.2221 -0.51897 + 2005 1 27 53397 0.1070 0.2213 -0.51908 + 2005 1 28 53398 0.1051 0.2206 -0.51939 + 2005 1 29 53399 0.1032 0.2199 -0.51987 + 2005 1 30 53400 0.1013 0.2192 -0.52050 + 2005 1 31 53401 0.0994 0.2186 -0.52119 + 2005 2 1 53402 0.0975 0.2180 -0.52187 + 2005 2 2 53403 0.0956 0.2174 -0.52246 + 2005 2 3 53404 0.0936 0.2168 -0.52288 + 2005 2 4 53405 0.0917 0.2163 -0.52309 + 2005 2 5 53406 0.0898 0.2158 -0.52311 + 2005 2 6 53407 0.0878 0.2153 -0.52305 + 2005 2 7 53408 0.0859 0.2149 -0.52303 + 2005 2 8 53409 0.0840 0.2144 -0.52321 + 2005 2 9 53410 0.0820 0.2141 -0.52368 + 2005 2 10 53411 0.0801 0.2137 -0.52444 + 2005 2 11 53412 0.0781 0.2134 -0.52542 + 2005 2 12 53413 0.0761 0.2131 -0.52646 + 2005 2 13 53414 0.0742 0.2128 -0.52744 + 2005 2 14 53415 0.0722 0.2126 -0.52822 + 2005 2 15 53416 0.0703 0.2124 -0.52877 + 2005 2 16 53417 0.0683 0.2122 -0.52907 + 2005 2 17 53418 0.0663 0.2120 -0.52916 + 2005 2 18 53419 0.0644 0.2119 -0.52910 + 2005 2 19 53420 0.0624 0.2118 -0.52897 + 2005 2 20 53421 0.0605 0.2117 -0.52883 + 2005 2 21 53422 0.0585 0.2117 -0.52876 + 2005 2 22 53423 0.0566 0.2117 -0.52882 + 2005 2 23 53424 0.0546 0.2117 -0.52907 + 2005 2 24 53425 0.0526 0.2118 -0.52951 + 2005 2 25 53426 0.0507 0.2118 -0.53014 + 2005 2 26 53427 0.0487 0.2119 -0.53091 + 2005 2 27 53428 0.0468 0.2121 -0.53174 + 2005 2 28 53429 0.0449 0.2122 -0.53254 + 2005 3 1 53430 0.0429 0.2124 -0.53321 + 2005 3 2 53431 0.0410 0.2126 -0.53368 + 2005 3 3 53432 0.0391 0.2129 -0.53392 + 2005 3 4 53433 0.0372 0.2131 -0.53393 + 2005 3 5 53434 0.0352 0.2134 -0.53380 + 2005 3 6 53435 0.0333 0.2138 -0.53366 + 2005 3 7 53436 0.0314 0.2141 -0.53365 + 2005 3 8 53437 0.0296 0.2145 -0.53389 + 2005 3 9 53438 0.0277 0.2149 -0.53443 + 2005 3 10 53439 0.0258 0.2154 -0.53526 + 2005 3 11 53440 0.0239 0.2159 -0.53627 + 2005 3 12 53441 0.0221 0.2164 -0.53733 + 2005 3 13 53442 0.0202 0.2169 -0.53830 + 2005 3 14 53443 0.0184 0.2174 -0.53908 + 2005 3 15 53444 0.0166 0.2180 -0.53964 + 2005 3 16 53445 0.0147 0.2186 -0.53998 + 2005 3 17 53446 0.0129 0.2192 -0.54014 + 2005 3 18 53447 0.0111 0.2198 -0.54018 + 2005 3 19 53448 0.0093 0.2205 -0.54018 + 2005 3 20 53449 0.0076 0.2212 -0.54022 + 2005 3 21 53450 0.0058 0.2219 -0.54037 + 2005 3 22 53451 0.0040 0.2227 -0.54069 + 2005 3 23 53452 0.0023 0.2234 -0.54118 + 2005 3 24 53453 0.0005 0.2242 -0.54185 + 2005 3 25 53454 -0.0012 0.2250 -0.54266 + 2005 3 26 53455 -0.0029 0.2258 -0.54356 + 2005 3 27 53456 -0.0046 0.2267 -0.54447 + 2005 3 28 53457 -0.0063 0.2276 -0.54530 + 2005 3 29 53458 -0.0079 0.2285 -0.54598 + 2005 3 30 53459 -0.0096 0.2294 -0.54647 + 2005 3 31 53460 -0.0112 0.2303 -0.54675 + 2005 4 1 53461 -0.0128 0.2313 -0.54688 + 2005 4 2 53462 -0.0144 0.2323 -0.54699 + 2005 4 3 53463 -0.0160 0.2333 -0.54724 + 2005 4 4 53464 -0.0176 0.2343 -0.54775 + 2005 4 5 53465 -0.0191 0.2353 -0.54858 + 2005 4 6 53466 -0.0207 0.2364 -0.54970 + 2005 4 7 53467 -0.0222 0.2375 -0.55097 + 2005 4 8 53468 -0.0237 0.2386 -0.55228 + 2005 4 9 53469 -0.0252 0.2397 -0.55354 + 2005 4 10 53470 -0.0267 0.2408 -0.55465 + 2005 4 11 53471 -0.0281 0.2420 -0.55556 + 2005 4 12 53472 -0.0295 0.2431 -0.55626 + 2005 4 13 53473 -0.0310 0.2443 -0.55677 + 2005 4 14 53474 -0.0323 0.2455 -0.55715 + 2005 4 15 53475 -0.0337 0.2468 -0.55748 + 2005 4 16 53476 -0.0351 0.2480 -0.55785 + 2005 4 17 53477 -0.0364 0.2493 -0.55833 + 2005 4 18 53478 -0.0377 0.2505 -0.55899 + 2005 4 19 53479 -0.0390 0.2518 -0.55988 + 2005 4 20 53480 -0.0403 0.2531 -0.56095 + 2005 4 21 53481 -0.0415 0.2545 -0.56216 + 2005 4 22 53482 -0.0427 0.2558 -0.56347 + 2005 4 23 53483 -0.0439 0.2572 -0.56478 + 2005 4 24 53484 -0.0451 0.2585 -0.56599 + 2005 4 25 53485 -0.0463 0.2599 -0.56699 + 2005 4 26 53486 -0.0474 0.2613 -0.56769 + 2005 4 27 53487 -0.0485 0.2627 -0.56808 + 2005 4 28 53488 -0.0496 0.2641 -0.56824 + 2005 4 29 53489 -0.0507 0.2656 -0.56830 + 2005 4 30 53490 -0.0517 0.2670 -0.56839 + 2005 5 1 53491 -0.0527 0.2685 -0.56860 + 2005 5 2 53492 -0.0537 0.2700 -0.56897 + 2005 5 3 53493 -0.0547 0.2714 -0.56955 + 2005 5 4 53494 -0.0556 0.2729 -0.57032 + 2005 5 5 53495 -0.0565 0.2744 -0.57119 + 2005 5 6 53496 -0.0574 0.2760 -0.57204 + 2005 5 7 53497 -0.0583 0.2775 -0.57277 + 2005 5 8 53498 -0.0591 0.2790 -0.57329 + 2005 5 9 53499 -0.0600 0.2806 -0.57354 + 2005 5 10 53500 -0.0607 0.2821 -0.57350 + 2005 5 11 53501 -0.0615 0.2837 -0.57328 + 2005 5 12 53502 -0.0622 0.2853 -0.57298 + 2005 5 13 53503 -0.0630 0.2869 -0.57261 + 2005 5 14 53504 -0.0636 0.2885 -0.57218 + 2005 5 15 53505 -0.0643 0.2901 -0.57175 + 2005 5 16 53506 -0.0649 0.2917 -0.57143 + 2005 5 17 53507 -0.0655 0.2933 -0.57124 + 2005 5 18 53508 -0.0661 0.2949 -0.57117 + 2005 5 19 53509 -0.0667 0.2966 -0.57124 + 2005 5 20 53510 -0.0672 0.2982 -0.57139 + 2005 5 21 53511 -0.0677 0.2999 -0.57158 + 2005 5 22 53512 -0.0682 0.3015 -0.57166 + 2005 5 23 53513 -0.0686 0.3032 -0.57155 + 2005 5 24 53514 -0.0690 0.3048 -0.57116 + 2005 5 25 53515 -0.0694 0.3065 -0.57057 + 2005 5 26 53516 -0.0698 0.3082 -0.56989 + 2005 5 27 53517 -0.0701 0.3098 -0.56921 + 2005 5 28 53518 -0.0704 0.3115 -0.56860 + 2005 5 29 53519 -0.0707 0.3132 -0.56818 + 2005 5 30 53520 -0.0710 0.3149 -0.56799 + 2005 5 31 53521 -0.0712 0.3166 -0.56800 + 2005 6 1 53522 -0.0714 0.3183 -0.56809 + 2005 6 2 53523 -0.0716 0.3200 -0.56815 + 2005 6 3 53524 -0.0717 0.3217 -0.56808 + 2005 6 4 53525 -0.0718 0.3234 -0.56781 + 2005 6 5 53526 -0.0719 0.3251 -0.56728 + 2005 6 6 53527 -0.0720 0.3268 -0.56651 + 2005 6 7 53528 -0.0720 0.3285 -0.56557 + 2005 6 8 53529 -0.0720 0.3302 -0.56454 + 2005 6 9 53530 -0.0720 0.3319 -0.56347 + 2005 6 10 53531 -0.0720 0.3336 -0.56244 + 2005 6 11 53532 -0.0719 0.3353 -0.56148 + 2005 6 12 53533 -0.0718 0.3370 -0.56060 + 2005 6 13 53534 -0.0717 0.3387 -0.55990 + 2005 6 14 53535 -0.0715 0.3404 -0.55943 + 2005 6 15 53536 -0.0713 0.3421 -0.55916 + 2005 6 16 53537 -0.0711 0.3438 -0.55897 + 2005 6 17 53538 -0.0709 0.3455 -0.55881 + 2005 6 18 53539 -0.0707 0.3472 -0.55859 + 2005 6 19 53540 -0.0704 0.3489 -0.55820 + 2005 6 20 53541 -0.0701 0.3506 -0.55751 + 2005 6 21 53542 -0.0697 0.3523 -0.55650 + 2005 6 22 53543 -0.0694 0.3540 -0.55529 + 2005 6 23 53544 -0.0690 0.3557 -0.55402 + 2005 6 24 53545 -0.0686 0.3573 -0.55279 + 2005 6 25 53546 -0.0682 0.3590 -0.55173 + 2005 6 26 53547 -0.0677 0.3607 -0.55093 + 2005 6 27 53548 -0.0673 0.3623 -0.55037 + 2005 6 28 53549 -0.0668 0.3640 -0.54994 + 2005 6 29 53550 -0.0662 0.3656 -0.54947 + 2005 6 30 53551 -0.0657 0.3673 -0.54884 + 2005 7 1 53552 -0.0651 0.3689 -0.54798 + 2005 7 2 53553 -0.0645 0.3705 -0.54689 + 2005 7 3 53554 -0.0639 0.3721 -0.54560 + 2005 7 4 53555 -0.0633 0.3738 -0.54414 + 2005 7 5 53556 -0.0626 0.3754 -0.54257 + 2005 7 6 53557 -0.0620 0.3770 -0.54101 + 2005 7 7 53558 -0.0613 0.3786 -0.53952 + 2005 7 8 53559 -0.0605 0.3801 -0.53819 + 2005 7 9 53560 -0.0598 0.3817 -0.53705 + 2005 7 10 53561 -0.0590 0.3833 -0.53611 + 2005 7 11 53562 -0.0583 0.3848 -0.53535 + 2005 7 12 53563 -0.0575 0.3864 -0.53475 + 2005 7 13 53564 -0.0566 0.3879 -0.53425 + 2005 7 14 53565 -0.0558 0.3895 -0.53374 + 2005 7 15 53566 -0.0549 0.3910 -0.53315 + 2005 7 16 53567 -0.0541 0.3925 -0.53243 + 2005 7 17 53568 -0.0532 0.3940 -0.53152 + 2005 7 18 53569 -0.0523 0.3955 -0.53042 + 2005 7 19 53570 -0.0513 0.3969 -0.52913 + 2005 7 20 53571 -0.0504 0.3984 -0.52776 + 2005 7 21 53572 -0.0494 0.3998 -0.52644 + 2005 7 22 53573 -0.0485 0.4013 -0.52532 + 2005 7 23 53574 -0.0475 0.4027 -0.52451 + 2005 7 24 53575 -0.0464 0.4041 -0.52400 + 2005 7 25 53576 -0.0454 0.4055 -0.52377 + 2005 7 26 53577 -0.0444 0.4069 -0.52366 + 2005 7 27 53578 -0.0433 0.4083 -0.52344 + 2005 7 28 53579 -0.0423 0.4096 -0.52299 + 2005 7 29 53580 -0.0412 0.4110 -0.52228 + 2005 7 30 53581 -0.0401 0.4123 -0.52130 + 2005 7 31 53582 -0.0390 0.4136 -0.52010 + 2005 8 1 53583 -0.0378 0.4149 -0.51872 + 2005 8 2 53584 -0.0367 0.4162 -0.51725 + 2005 8 3 53585 -0.0356 0.4175 -0.51578 + 2005 8 4 53586 -0.0344 0.4188 -0.51436 + 2005 8 5 53587 -0.0332 0.4200 -0.51310 + 2005 8 6 53588 -0.0320 0.4212 -0.51204 + 2005 8 7 53589 -0.0309 0.4224 -0.51120 + 2005 8 8 53590 -0.0297 0.4236 -0.51055 + 2005 8 9 53591 -0.0284 0.4248 -0.51006 + 2005 8 10 53592 -0.0272 0.4260 -0.50966 + 2005 8 11 53593 -0.0260 0.4271 -0.50922 + 2005 8 12 53594 -0.0247 0.4283 -0.50872 + 2005 8 13 53595 -0.0235 0.4294 -0.50809 + 2005 8 14 53596 -0.0222 0.4305 -0.50729 + 2005 8 15 53597 -0.0210 0.4315 -0.50638 + 2005 8 16 53598 -0.0197 0.4326 -0.50535 + 2005 8 17 53599 -0.0184 0.4336 -0.50431 + 2005 8 18 53600 -0.0171 0.4347 -0.50339 + 2005 8 19 53601 -0.0158 0.4357 -0.50273 + 2005 8 20 53602 -0.0145 0.4367 -0.50244 + 2005 8 21 53603 -0.0132 0.4376 -0.50247 + 2005 8 22 53604 -0.0119 0.4386 -0.50267 + 2005 8 23 53605 -0.0106 0.4395 -0.50286 + 2005 8 24 53606 -0.0093 0.4404 -0.50287 + 2005 8 25 53607 -0.0079 0.4413 -0.50263 + 2005 8 26 53608 -0.0066 0.4422 -0.50217 + These predictions are based on all announced leap seconds. + + The IERS Conventions recommended software to predict celestial pole + offsets is available at ftp://maia.usno.navy.mil/conventions/chapter5/ + ceppred.f and software for the calculation of the dX and dY with + respect to IAU2000A Nutation/Precession Theory can be found at the + http://maia.usno.navy.mil/conv2000.html web site in section chapter 5. + + ************************************************************************** + Important Notice - IAU 2000 Resolution Compliancy Information + ************************************************************************** + + Resolutions passed at the 24th General Assembly of the International + Astronomical Union (IAU) recommend the implementation of a number of new + procedures concerning the transformation between the celestial and + terrestrial reference systems. Information regarding these procedures + is available in Chapter 5 of the IERS Conventions 2000 available at + http://maia.usno.navy.mil/conv2000.html. + + With these resolutions, beginning on 1 January 2003, IERS Bulletins A and + B will publish new products in addition to those already published. These + products will include the celestial pole offsets X_obs-X_IAU2000A + and Y_obs-Y_IAU2000A where + + X_obs and Y_obs are the observed X, Y coordinates of the Celestial + Intermediate Pole in the Geocentric Celestial Reference System, and + + X_IAU2000A and Y_IAU2000A are the celestial pole coordinates provided by + using the IAU2000A Precession-Nutation theory. + + It is expected that Celestial Pole offsets related to the IAU1980 Nutation + Theory will continue to be published through 31 December 2004. The new + celestial pole offsets related to the new IAU2000A Precession-Nutation + theory will be produced in a separate data file as well as appended to + to this file. + + ************************************************************************** + Important Notice - IAU 2000 Resolution Compliancy Information + ************************************************************************** + Index: /branches/rel-1-1/psLib/share/tab5.2a.coeff =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2a.coeff (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2a.coeff (revision 12167) @@ -0,0 +1,11 @@ +# Expression for the X coordinate of the CIP in the GCRS based on the IAU2000A +# precession-nutation model +# +# +# -------------------------------------------------------------------------------------------------------------- +# +# X = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# Polynomial part (unit microarcsecond) +-16616.99 +2004191742.88 -427219.05 -198620.54 -46.05 +5.98 Index: /branches/rel-1-1/psLib/share/tab5.2a.dat =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2a.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2a.dat (revision 12167) @@ -0,0 +1,1630 @@ +# Expression for the X coordinate of the CIP in the GCRS based on the IAU2000A +# precession-nutation model +# +# +# -------------------------------------------------------------------------------------------------------------- +# +# X = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# +# -------------------------------------------------------------------------------------------------------------- +# +# Non-polynomial part (unit microarcsecond) +# (ARG being for various combination of the fundamental arguments of the nutation theory) +# +# Sum_i[a_{s,0})_i * sin(ARG) + a_{c,0})_i * cos(ARG)] +# +# + Sum_i)j=1,4 [a_{s,j})_i * t^j * sin(ARG) + a_{c,j})_i * cos(ARG)] * t^j] +# +# The Table below provides the values for a_{s,j})_i and a_{c,j})_i +# +# The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +# and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 +# +# -------------------------------------------------------------------------------------------------------------- +# +# i a_{s,j})_i a_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A +# +# -------------------------------------------------------------------------------------------------------------- +# +0 -6844318.44 1328.67 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 -523908.04 -544.76 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -90552.22 111.23 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 82168.76 -27.64 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +0 58707.02 470.05 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +0 28288.28 -34.69 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +0 -20557.78 -20.84 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -15406.85 15.12 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 -11991.74 32.46 1 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -8584.95 4.42 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 +0 -6245.02 -6.68 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 +0 5095.50 7.19 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 -4910.93 0.76 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 2521.07 -5.97 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +0 2511.85 1.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 2372.58 5.93 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 2307.58 -7.52 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +0 -2053.16 5.13 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 1898.27 -0.72 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 +0 -1825.49 1.23 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 -1534.09 6.29 0 0 2 2 2 0 0 0 0 0 0 0 0 0 +0 -1292.02 0.00 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 +0 -1234.96 5.21 2 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 1163.22 -2.94 2 0 0 0 0 0 0 0 0 0 0 0 0 0 +0 1137.48 -0.04 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 1029.70 -2.63 0 0 2 0 0 0 0 0 0 0 0 0 0 0 +0 -866.48 0.52 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 +0 -813.13 0.40 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 664.57 -0.40 0 2 0 0 0 0 0 0 0 0 0 0 0 0 +0 -628.24 -0.64 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -603.52 0.44 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 -556.26 3.16 0 1 0 0 1 0 0 0 0 0 0 0 0 0 +0 -512.37 -1.47 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 +0 506.65 2.54 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 +0 438.51 -0.56 2 0 -2 0 0 0 0 0 0 0 0 0 0 0 +0 405.91 0.99 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 +0 -122.67 203.78 0 0 1 -1 1 0 0 -1 0 -2 5 0 0 0 +0 -305.78 1.75 1 0 2 2 2 0 0 0 0 0 0 0 0 0 +0 300.99 -0.44 0 1 2 0 2 0 0 0 0 0 0 0 0 0 +0 -292.37 -0.32 1 1 0 -2 0 0 0 0 0 0 0 0 0 0 +0 284.09 0.32 0 1 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 -264.02 0.99 0 0 2 2 1 0 0 0 0 0 0 0 0 0 +0 261.54 -0.95 1 0 0 2 0 0 0 0 0 0 0 0 0 0 +0 256.30 -0.28 2 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -250.54 0.08 0 0 0 2 1 0 0 0 0 0 0 0 0 0 +0 230.72 0.08 1 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 229.78 -0.60 2 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 -212.82 0.84 2 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 196.64 -0.84 0 0 0 2 -1 0 0 0 0 0 0 0 0 0 +0 188.95 -0.12 0 1 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 187.95 -0.24 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 +0 -160.15 -14.04 1 0 0 -1 0 0 0 0 0 0 0 0 0 0 +0 -172.95 -0.40 0 1 0 -2 0 0 0 0 0 0 0 0 0 0 +0 -168.26 0.20 0 0 0 1 0 0 0 0 0 0 0 0 0 0 +0 161.79 0.24 2 0 0 -2 1 0 0 0 0 0 0 0 0 0 +0 161.34 0.20 1 0 -2 0 0 0 0 0 0 0 0 0 0 0 +0 57.44 95.82 0 0 0 0 0 0 0 0 0 2 -5 0 0 -1 +0 142.16 0.20 0 1 2 -2 1 0 0 0 0 0 0 0 0 0 +0 -134.81 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 +0 132.81 -0.52 1 0 2 0 0 0 0 0 0 0 0 0 0 0 +0 -130.31 0.04 1 -1 0 -1 0 0 0 0 0 0 0 0 0 0 +0 121.98 -0.08 2 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 -115.40 0.60 3 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -114.49 0.32 1 -1 2 0 2 0 0 0 0 0 0 0 0 0 +0 112.14 0.28 1 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 105.29 0.44 0 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 98.69 -0.28 1 1 2 0 2 0 0 0 0 0 0 0 0 0 +0 91.31 -0.40 2 0 0 0 -1 0 0 0 0 0 0 0 0 0 +0 86.74 -0.08 2 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 -18.38 63.80 0 0 0 0 0 0 0 4 -8 3 0 0 0 0 +0 82.14 0.00 0 0 0 0 0 0 3 -5 0 0 0 0 0 -2 +0 79.03 -0.24 1 0 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 0.00 -79.08 0 1 -1 1 -1 0 0 0 0 0 0 0 0 0 +0 -78.56 0.00 1 0 0 0 2 0 0 0 0 0 0 0 0 0 +0 47.73 23.79 0 0 1 -1 1 0 -8 12 0 0 0 0 0 0 +0 66.03 -0.20 0 0 2 1 2 0 0 0 0 0 0 0 0 0 +0 62.65 -0.24 3 0 0 0 0 0 0 0 0 0 0 0 0 0 +0 60.50 0.36 1 0 -2 -4 -2 0 0 0 0 0 0 0 0 0 +0 59.07 0.00 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 +0 57.28 0.00 0 0 0 0 0 0 0 8 -16 4 5 0 0 0 +0 -55.66 0.16 1 0 0 0 -2 0 0 0 0 0 0 0 0 0 +0 -54.81 -0.08 2 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 -53.22 -0.20 1 0 0 -4 0 0 0 0 0 0 0 0 0 0 +0 -52.95 0.32 1 0 2 2 1 0 0 0 0 0 0 0 0 0 +0 -52.27 0.00 1 -1 0 -1 -1 0 0 0 0 0 0 0 0 0 +0 51.32 0.00 1 1 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -51.00 -0.12 2 0 0 -4 0 0 0 0 0 0 0 0 0 0 +0 51.02 0.00 0 2 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 -48.65 -1.15 0 0 0 0 0 0 0 1 0 -1 0 0 0 0 +0 48.29 0.20 2 0 -2 -4 -2 0 0 0 0 0 0 0 0 0 +0 -46.38 0.00 0 0 0 0 0 0 0 0 0 2 0 0 0 2 +0 -45.59 -0.12 1 0 -4 0 -2 0 0 0 0 0 0 0 0 0 +0 -43.76 0.36 2 0 2 2 2 0 0 0 0 0 0 0 0 0 +0 -40.58 -1.00 1 0 0 -1 -1 0 0 0 0 0 0 0 0 0 +0 0.00 -41.53 1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 +0 40.54 -0.04 2 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 40.33 -0.04 2 1 0 -2 0 0 0 0 0 0 0 0 0 0 +0 -38.57 0.08 1 0 0 2 1 0 0 0 0 0 0 0 0 0 +0 37.75 0.04 1 -1 0 -2 0 0 0 0 0 0 0 0 0 0 +0 37.15 -0.12 3 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 36.68 -0.04 0 0 4 -2 2 0 0 0 0 0 0 0 0 0 +0 -18.30 -17.30 0 0 0 0 1 0 0 -1 2 0 0 0 0 0 +0 -17.86 17.10 0 0 0 0 0 0 0 1 -2 0 0 0 0 0 +0 -34.81 0.04 0 1 -2 2 0 0 0 0 0 0 0 0 0 0 +0 -33.22 0.08 0 0 2 -2 -1 0 0 0 0 0 0 0 0 0 +0 32.43 -0.04 0 1 2 0 1 0 0 0 0 0 0 0 0 0 +0 -30.47 0.04 1 0 2 -2 0 0 0 0 0 0 0 0 0 0 +0 -29.53 0.04 1 1 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 28.50 -0.08 2 0 -2 0 1 0 0 0 0 0 0 0 0 0 +0 28.35 -0.16 0 1 0 0 2 0 0 0 0 0 0 0 0 0 +0 -28.00 0.00 0 0 2 -1 2 0 0 0 0 0 0 0 0 0 +0 -27.61 0.20 0 0 2 4 2 0 0 0 0 0 0 0 0 0 +0 -26.77 0.08 0 1 0 2 0 0 0 0 0 0 0 0 0 0 +0 26.54 -0.12 0 0 2 0 -1 0 0 0 0 0 0 0 0 0 +0 26.54 0.04 0 1 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 -26.17 0.00 0 1 2 -2 0 0 0 0 0 0 0 0 0 0 +0 -25.42 -0.08 1 0 -2 -2 0 0 0 0 0 0 0 0 0 0 +0 -16.91 8.43 0 0 0 0 0 0 8 -13 0 0 0 0 0 -1 +0 0.32 24.42 0 0 0 0 0 0 2 -3 0 0 0 0 0 0 +0 -19.53 5.09 0 0 0 0 0 0 0 0 0 2 -5 0 0 0 +0 -23.79 0.00 0 0 0 0 0 0 2 -2 0 0 0 0 0 0 +0 23.66 0.00 1 -1 0 -1 -2 0 0 0 0 0 0 0 0 0 +0 -23.47 0.16 1 -1 2 2 2 0 0 0 0 0 0 0 0 0 +0 23.39 -0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0 +0 -23.49 0.00 0 1 0 0 -2 0 0 0 0 0 0 0 0 0 +0 -23.28 -0.08 1 1 0 -2 1 0 0 0 0 0 0 0 0 0 +0 -22.99 0.04 1 0 -2 2 0 0 0 0 0 0 0 0 0 0 +0 -22.67 -0.08 1 -1 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 9.35 13.29 0 0 0 0 0 0 8 -13 0 0 0 0 0 0 +0 22.47 -0.04 0 1 0 1 0 0 0 0 0 0 0 0 0 0 +0 4.89 -16.55 0 0 0 0 0 0 0 2 -8 3 0 0 0 -2 +0 4.89 -16.51 0 0 0 0 0 0 0 6 -8 3 0 0 0 2 +0 21.28 -0.08 0 1 2 2 2 0 0 0 0 0 0 0 0 0 +0 20.57 0.64 0 0 0 0 0 0 0 3 0 -1 0 0 0 2 +0 21.01 0.00 1 -1 0 0 1 0 0 0 0 0 0 0 0 0 +0 1.23 -19.13 0 0 1 -1 1 0 0 -1 0 2 -5 0 0 0 +0 -19.97 0.12 3 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 19.65 -0.08 0 0 0 4 0 0 0 0 0 0 0 0 0 0 +0 19.58 -0.12 1 0 0 2 -1 0 0 0 0 0 0 0 0 0 +0 19.61 -0.08 1 -1 0 2 0 0 0 0 0 0 0 0 0 0 +0 -19.41 0.08 2 -1 2 0 2 0 0 0 0 0 0 0 0 0 +0 -19.49 0.00 0 0 0 0 0 0 4 -6 0 0 0 0 0 -2 +0 -18.64 0.00 0 0 0 2 2 0 0 0 0 0 0 0 0 0 +0 18.58 0.04 1 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 +0 -18.42 0.00 1 -1 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 18.22 0.00 0 0 0 0 0 0 2 -4 0 0 0 0 0 -2 +0 -0.72 -17.34 0 0 2 -2 1 0 -5 6 0 0 0 0 0 0 +0 -18.02 -0.04 1 0 2 -4 1 0 0 0 0 0 0 0 0 0 +0 17.74 0.08 0 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 +0 17.46 0.00 2 0 0 -2 0 0 0 -2 0 2 0 0 0 0 +0 -17.42 0.00 0 3 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -6.60 10.70 0 0 0 0 0 0 0 1 0 -2 0 0 0 0 +0 16.43 0.52 0 0 0 0 0 0 0 2 0 -2 0 0 0 0 +0 -16.75 0.04 1 -1 2 0 1 0 0 0 0 0 0 0 0 0 +0 16.55 -0.08 0 0 2 2 0 0 0 0 0 0 0 0 0 0 +0 16.39 -0.08 2 1 2 0 2 0 0 0 0 0 0 0 0 0 +0 13.88 -2.47 2 0 0 -2 0 0 0 -2 0 3 0 0 0 0 +0 15.69 0.00 1 0 0 -2 -2 0 0 0 0 0 0 0 0 0 +0 -15.52 0.00 0 0 0 1 1 0 0 0 0 0 0 0 0 0 +0 3.34 11.86 0 0 0 0 1 0 0 -4 8 -3 0 0 0 0 +0 14.72 -0.32 0 0 0 0 0 0 2 0 0 0 0 0 0 2 +0 14.92 -0.04 2 -1 0 0 0 0 0 0 0 0 0 0 0 0 +0 -3.26 11.62 0 0 0 0 1 0 0 4 -8 3 0 0 0 0 +0 -14.64 0.00 0 0 0 0 0 0 0 2 -2 0 0 0 0 0 +0 0.00 14.47 1 0 -1 0 -2 0 0 0 0 0 0 0 0 0 +0 -14.37 0.00 1 1 0 0 1 0 0 0 0 0 0 0 0 0 +0 14.32 -0.04 1 1 2 0 1 0 0 0 0 0 0 0 0 0 +0 -14.10 0.04 1 0 -2 2 -2 0 0 0 0 0 0 0 0 0 +0 10.86 3.18 0 0 1 -1 1 0 0 0 -2 0 0 0 0 0 +0 -10.58 -3.10 0 0 1 -1 0 0 0 0 -2 0 0 0 0 0 +0 -3.62 9.86 0 0 0 0 0 0 0 0 0 1 0 0 0 0 +0 -13.48 0.00 0 0 0 0 0 0 1 1 0 0 0 0 0 2 +0 13.41 -0.04 1 0 2 1 2 0 0 0 0 0 0 0 0 0 +0 13.32 -0.08 2 0 2 0 0 0 0 0 0 0 0 0 0 0 +0 -13.33 -0.04 0 1 0 -2 1 0 0 0 0 0 0 0 0 0 +0 -13.29 0.00 1 0 2 -1 2 0 0 0 0 0 0 0 0 0 +0 -0.20 13.05 0 0 0 0 0 0 3 -4 0 0 0 0 0 0 +0 0.00 13.13 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 +0 -8.99 4.02 1 0 0 0 0 0 -18 16 0 0 0 0 0 0 +0 -12.93 0.04 1 0 0 1 0 0 0 0 0 0 0 0 0 0 +0 2.03 10.82 0 0 0 0 0 0 0 0 0 2 0 0 0 1 +0 -12.78 0.04 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 +0 12.24 0.04 1 0 0 -2 2 0 0 0 0 0 0 0 0 0 +0 8.71 3.54 1 0 0 0 0 0 -10 3 0 0 0 0 0 0 +0 11.98 -0.04 1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 +0 -11.38 0.04 2 1 0 0 0 0 0 0 0 0 0 0 0 0 +0 -11.30 0.00 2 0 0 -2 -1 0 0 -2 0 2 0 0 0 0 +0 11.14 -0.04 0 0 2 1 1 0 0 0 0 0 0 0 0 0 +0 10.98 0.00 0 3 0 0 0 0 0 0 0 0 0 0 0 0 +0 -10.98 0.00 1 2 0 -2 0 0 0 0 0 0 0 0 0 0 +0 0.44 -10.38 0 0 0 0 0 0 5 -8 0 0 0 0 0 -2 +0 10.46 0.08 1 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 +0 -10.42 0.00 0 0 0 0 0 0 0 1 0 1 0 0 0 2 +0 -10.30 0.08 4 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 6.92 3.34 0 0 1 -1 1 0 0 -1 0 0 -1 0 0 0 +0 10.07 0.04 1 0 -2 0 1 0 0 0 0 0 0 0 0 0 +0 10.02 0.00 2 1 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -9.75 0.04 0 1 2 1 2 0 0 0 0 0 0 0 0 0 +0 9.75 0.00 1 1 2 -2 1 0 0 0 0 0 0 0 0 0 +0 9.67 -0.04 1 0 4 -2 2 0 0 0 0 0 0 0 0 0 +0 -1.99 7.72 0 0 1 -1 1 0 0 -1 0 -1 0 0 0 0 +0 0.40 9.27 0 0 2 -2 0 0 -5 6 0 0 0 0 0 0 +0 -3.42 6.09 0 0 0 0 0 0 0 2 -4 0 0 0 0 0 +0 0.56 -8.67 0 0 0 0 0 0 0 0 0 2 -5 0 0 1 +0 -9.19 0.00 2 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 +0 9.11 0.00 1 0 -2 1 -1 0 0 0 0 0 0 0 0 0 +0 9.07 0.00 2 -2 0 -2 0 0 0 0 0 0 0 0 0 0 +0 1.63 6.96 0 0 0 0 0 0 8 -13 0 0 0 0 0 -2 +0 -8.47 0.00 0 2 0 -2 0 0 0 0 0 0 0 0 0 0 +0 -8.28 0.04 1 1 0 0 -1 0 0 0 0 0 0 0 0 0 +0 8.27 0.04 2 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 +0 -8.04 0.00 0 0 0 0 0 0 5 -7 0 0 0 0 0 -2 +0 7.91 0.00 0 1 0 2 1 0 0 0 0 0 0 0 0 0 +0 -7.84 -0.04 1 0 -4 0 -1 0 0 0 0 0 0 0 0 0 +0 -7.64 0.08 2 0 2 2 1 0 0 0 0 0 0 0 0 0 +0 5.21 -2.51 1 0 2 0 2 0 0 1 0 0 0 0 0 0 +0 -5.77 1.87 0 0 0 0 0 0 3 -5 0 0 0 0 0 0 +0 5.01 -2.51 1 0 -2 0 -2 0 0 4 -8 3 0 0 0 0 +0 -7.48 0.00 0 0 2 -3 2 0 0 0 0 0 0 0 0 0 +0 -7.32 -0.12 0 0 0 0 0 0 0 4 0 -2 0 0 0 2 +0 7.40 -0.04 0 0 4 0 2 0 0 0 0 0 0 0 0 0 +0 7.44 0.00 1 0 0 -4 -1 0 0 0 0 0 0 0 0 0 +0 6.32 -1.11 1 0 0 -1 1 0 0 0 0 0 0 0 0 0 +0 -6.13 -1.19 0 0 0 0 0 0 0 2 0 -1 0 0 0 2 +0 0.20 -6.88 0 0 0 0 0 0 2 -1 0 0 0 0 0 2 +0 6.92 0.04 1 1 -2 -4 -2 0 0 0 0 0 0 0 0 0 +0 6.48 -0.48 0 0 0 0 0 0 0 2 0 1 0 0 0 2 +0 -6.94 0.00 2 0 0 -2 -2 0 0 0 0 0 0 0 0 0 +0 2.47 -4.46 0 0 0 0 0 0 8 -11 0 0 0 0 0 -2 +0 -2.23 -4.65 0 0 0 0 0 0 0 8 -16 4 5 0 0 -2 +0 -1.07 -5.69 0 0 1 -1 1 0 0 -1 0 2 0 0 0 0 +0 4.97 -1.71 0 0 0 0 0 0 0 8 -16 4 5 0 0 2 +0 5.57 1.07 0 0 1 -1 1 0 -5 7 0 0 0 0 0 0 +0 -6.48 0.08 1 0 2 4 2 0 0 0 0 0 0 0 0 0 +0 2.03 4.53 0 0 0 0 0 0 0 0 0 0 2 0 0 1 +0 4.10 -2.39 1 0 0 -2 0 0 19 -21 3 0 0 0 0 0 +0 0.00 -6.44 0 0 1 0 1 0 0 0 0 0 0 0 0 0 +0 -6.40 0.00 3 0 0 -4 0 0 0 0 0 0 0 0 0 0 +0 6.32 0.00 1 1 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 2.67 -3.62 0 0 0 0 0 0 0 3 0 -2 0 0 0 2 +0 -1.91 -4.38 0 0 1 -1 1 0 0 -1 0 0 2 0 0 0 +0 -2.43 -3.82 0 0 0 0 0 0 8 -15 0 0 0 0 0 -2 +0 6.20 0.00 0 1 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 -3.38 -2.78 0 0 0 0 0 0 0 1 2 0 0 0 0 2 +0 -6.12 0.04 0 0 0 4 1 0 0 0 0 0 0 0 0 0 +0 -6.09 -0.04 0 0 2 -4 1 0 0 0 0 0 0 0 0 0 +0 -6.01 -0.04 1 1 0 -4 0 0 0 0 0 0 0 0 0 0 +0 3.18 -2.82 0 0 0 0 0 0 0 3 -2 0 0 0 0 2 +0 -5.05 0.84 0 0 0 0 0 0 0 0 0 3 0 0 0 2 +0 5.85 0.00 3 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 5.69 -0.12 0 0 0 0 0 0 0 4 -2 0 0 0 0 2 +0 5.73 -0.04 1 1 2 2 2 0 0 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0.01 -0.12 2 1 -2 0 -1 0 0 0 0 0 0 0 0 0 +1 0.00 0.12 0 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 +1 -0.02 -0.11 0 0 0 0 0 0 5 -8 0 0 0 0 0 -1 +1 0.00 -0.12 2 0 2 -4 1 0 0 0 0 0 0 0 0 0 +1 0.00 -0.12 0 0 0 0 0 0 0 8 -16 4 5 0 0 2 +1 0.00 -0.12 0 0 1 -1 1 0 0 -5 8 -3 0 0 0 0 +1 0.04 0.08 1 0 0 0 -1 0 -18 16 0 0 0 0 0 0 +1 0.00 -0.12 0 0 0 0 0 0 0 1 0 -3 0 0 0 -2 +1 0.00 0.12 1 -1 0 -2 -2 0 0 0 0 0 0 0 0 0 +1 0.00 -0.12 0 0 0 2 -2 0 0 0 0 0 0 0 0 0 +1 0.00 -0.11 0 0 0 0 0 0 6 -8 0 0 0 0 0 -2 +1 0.03 -0.09 1 0 0 -4 0 0 0 0 0 0 0 0 0 0 +1 0.00 0.11 0 2 0 0 1 0 0 0 0 0 0 0 0 0 +1 -0.11 0.00 0 0 0 0 0 0 3 -2 0 0 0 0 0 2 +1 0.00 0.11 1 -1 2 2 1 0 0 0 0 0 0 0 0 0 +1 0.00 -0.11 1 -1 -2 0 -1 0 0 0 0 0 0 0 0 0 +1 0.07 0.05 0 0 0 0 1 0 -8 13 0 0 0 0 0 0 +1 0.11 0.00 0 0 0 0 0 0 2 -5 0 0 0 0 0 -2 +1 0.00 -0.11 0 0 0 0 0 0 1 -3 0 0 0 0 0 -2 +1 0.00 -0.11 4 0 2 -2 2 0 0 0 0 0 0 0 0 0 +1 0.02 -0.09 0 0 0 0 1 0 0 0 0 -2 5 0 0 0 +1 0.00 0.11 2 1 -2 -4 -2 0 0 0 0 0 0 0 0 0 +1 0.02 0.09 0 0 0 0 1 0 0 0 0 2 -5 0 0 0 +1 0.00 -0.11 0 2 2 -2 1 0 0 0 0 0 0 0 0 0 +1 0.00 0.11 1 0 2 0 -1 0 0 0 0 0 0 0 0 0 +1 -0.08 -0.02 0 0 0 0 1 0 0 0 0 1 0 0 0 0 +1 0.00 -0.10 2 1 0 -2 1 0 0 0 0 0 0 0 0 0 +1 0.00 -0.10 2 -1 -2 0 -1 0 0 0 0 0 0 0 0 0 +1 -0.03 -0.07 1 0 0 0 1 0 -18 16 0 0 0 0 0 0 +1 0.00 0.10 1 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 +1 0.00 0.10 2 0 0 -2 2 0 0 0 0 0 0 0 0 0 +1 0.00 -0.10 1 -1 -2 -2 -1 0 0 0 0 0 0 0 0 0 +2 2038.00 82.26 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 155.75 -2.70 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 26.92 -0.45 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 -24.43 0.46 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +2 -17.36 -0.50 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +2 -8.41 0.01 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +2 6.08 -1.36 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +2 4.59 0.17 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 3.57 -0.06 1 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 2.54 0.60 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 +2 1.86 0.00 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 +2 -1.52 -0.07 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +2 1.46 0.04 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +2 -0.75 -0.02 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 -0.75 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +2 -0.71 -0.01 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +2 -0.69 0.02 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +2 0.61 0.02 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 0.54 -0.04 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +2 -0.56 0.00 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 +2 0.46 -0.02 0 0 2 2 2 0 0 0 0 0 0 0 0 0 +2 0.38 -0.01 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 +2 0.37 -0.02 2 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 -0.34 0.01 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 -0.35 0.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 +2 -0.31 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 +2 0.19 -0.09 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 +2 0.26 0.00 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 +2 0.24 -0.01 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +2 -0.20 0.00 0 2 0 0 0 0 0 0 0 0 0 0 0 0 +2 0.18 -0.01 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +2 0.17 0.00 0 1 0 0 1 0 0 0 0 0 0 0 0 0 +2 0.15 0.01 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 +2 -0.15 0.00 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 +2 -0.13 0.00 2 0 -2 0 0 0 0 0 0 0 0 0 0 0 +2 -0.12 0.00 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 +3 1.76 -20.39 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +3 0.00 -1.27 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +3 0.00 -0.22 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +3 0.00 0.20 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +4 -0.10 -0.02 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Index: /branches/rel-1-1/psLib/share/tab5.2a.txt =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2a.txt (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2a.txt (revision 12167) @@ -0,0 +1,1651 @@ +Expression for the X coordinate of the CIP in the GCRS based on the IAU2000A +precession-nutation model + + +-------------------------------------------------------------------------------------------------------------- + +X = polynomial part + non-polynomial part + +-------------------------------------------------------------------------------------------------------------- + +Polynomial part (unit microarcsecond) + + -16616.99 + 2004191742.88 t - 427219.05 t^2 - 198620.54 t^3 - 46.05 t^4 + 5.98 t^5 + +-------------------------------------------------------------------------------------------------------------- + +Non-polynomial part (unit microarcsecond) +(ARG being for various combination of the fundamental arguments of the nutation theory) + + Sum_i[a_{s,0})_i * sin(ARG) + a_{c,0})_i * cos(ARG)] + ++ Sum_i)j=1,4 [a_{s,j})_i * t^j * sin(ARG) + a_{c,j})_i * cos(ARG)] * t^j] + +The Table below provides the values for a_{s,j})_i and a_{c,j})_i + +The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 + +-------------------------------------------------------------------------------------------------------------- + + i a_{s,j})_i a_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A + +-------------------------------------------------------------------------------------------------------------- + +j = 0 Nb of terms = 1306 + + 1 -6844318.44 1328.67 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 2 -523908.04 -544.76 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 3 -90552.22 111.23 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 4 82168.76 -27.64 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 5 58707.02 470.05 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + 6 28288.28 -34.69 1 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7 -20557.78 -20.84 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 8 -15406.85 15.12 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 9 -11991.74 32.46 1 0 2 0 2 0 0 0 0 0 0 0 0 0 + 10 -8584.95 4.42 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 + 11 -6245.02 -6.68 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 12 5095.50 7.19 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 13 -4910.93 0.76 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 14 2521.07 -5.97 0 0 0 2 0 0 0 0 0 0 0 0 0 0 + 15 2511.85 1.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 16 2372.58 5.93 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 17 2307.58 -7.52 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 18 -2053.16 5.13 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 19 1898.27 -0.72 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 20 -1825.49 1.23 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 21 -1534.09 6.29 0 0 2 2 2 0 0 0 0 0 0 0 0 0 + 22 -1292.02 0.00 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0 0 2 + 1461 0.14 -0.11 1 1 0 -2 0 0 0 0 0 0 0 0 0 0 + 1462 0.00 -0.25 1 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 1463 0.01 0.24 4 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1464 -0.01 -0.24 2 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 1465 0.00 0.23 2 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 + 1466 0.01 0.23 0 1 2 1 2 0 0 0 0 0 0 0 0 0 + 1467 -0.01 -0.23 1 0 4 -2 2 0 0 0 0 0 0 0 0 0 + 1468 0.00 -0.23 0 1 0 2 1 0 0 0 0 0 0 0 0 0 + 1469 0.00 -0.22 1 0 -4 0 -1 0 0 0 0 0 0 0 0 0 + 1470 0.00 0.21 1 0 0 -4 -1 0 0 0 0 0 0 0 0 0 + 1471 0.01 0.21 2 0 2 2 1 0 0 0 0 0 0 0 0 0 + 1472 -0.17 0.03 0 0 1 -1 1 0 0 -1 0 2 0 0 0 0 + 1473 -0.17 0.03 0 0 0 0 0 0 8 -13 0 0 0 0 0 -2 + 1474 0.00 -0.19 0 0 0 0 0 0 5 -7 0 0 0 0 0 -2 + 1475 0.14 -0.06 0 0 0 0 0 0 0 0 0 0 2 0 0 1 + 1476 0.03 -0.17 0 0 1 -1 1 0 -5 7 0 0 0 0 0 0 + 1477 -0.13 0.06 0 0 1 -1 1 0 0 -1 0 0 2 0 0 0 + 1478 0.00 0.19 0 0 2 -4 1 0 0 0 0 0 0 0 0 0 + 1479 0.00 0.19 0 0 2 -3 2 0 0 0 0 0 0 0 0 0 + 1480 -0.06 -0.13 1 0 2 0 2 0 0 1 0 0 0 0 0 0 + 1481 0.00 0.18 0 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1482 -0.09 -0.09 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 + 1483 0.10 -0.09 0 0 0 0 0 0 0 8 -16 4 5 0 0 -2 + 1484 0.06 0.12 1 0 -2 0 -2 0 0 4 -8 3 0 0 0 0 + 1485 0.00 0.18 0 0 0 0 0 0 0 4 0 -2 0 0 0 2 + 1486 0.00 -0.18 0 0 4 0 2 0 0 0 0 0 0 0 0 0 + 1487 0.00 0.17 0 0 0 4 1 0 0 0 0 0 0 0 0 0 + 1488 -0.03 0.15 0 0 0 0 0 0 0 2 0 -1 0 0 0 2 + 1489 -0.01 -0.16 0 0 0 0 0 0 0 2 0 1 0 0 0 2 + 1490 0.00 0.17 1 1 -2 -4 -2 0 0 0 0 0 0 0 0 0 + 1491 0.00 -0.17 2 0 0 -2 -2 0 0 0 0 0 0 0 0 0 + 1492 0.11 0.06 0 0 0 0 0 0 8 -11 0 0 0 0 0 -2 + 1493 0.00 -0.17 3 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 1494 -0.08 0.09 1 0 -2 0 0 0 0 0 0 0 0 0 0 0 + 1495 -0.17 0.00 0 0 0 0 0 0 2 -1 0 0 0 0 0 2 + 1496 0.00 -0.16 0 0 4 -2 1 0 0 0 0 0 0 0 0 0 + 1497 0.01 0.15 1 0 2 4 2 0 0 0 0 0 0 0 0 0 + 1498 -0.13 -0.03 0 0 0 0 0 0 1 -1 0 0 0 0 0 -1 + 1499 0.00 0.15 1 1 -2 0 -2 0 0 0 0 0 0 0 0 0 + 1500 0.00 0.15 2 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1501 -0.13 0.03 0 0 0 0 0 0 4 -6 0 0 0 0 0 -1 + 1502 0.10 -0.06 0 0 0 0 0 0 8 -15 0 0 0 0 0 -2 + 1503 -0.07 0.08 0 0 0 0 0 0 0 1 2 0 0 0 0 2 + 1504 -0.09 -0.06 0 0 0 0 0 0 0 3 0 -2 0 0 0 2 + 1505 0.00 0.15 3 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 1506 -0.07 -0.08 0 0 0 0 0 0 0 3 -2 0 0 0 0 2 + 1507 0.00 -0.14 2 0 0 -4 -1 0 0 0 0 0 0 0 0 0 + 1508 0.02 0.12 0 0 0 0 0 0 0 0 0 3 0 0 0 2 + 1509 0.07 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 + 1510 -0.03 -0.11 3 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1511 -0.01 -0.14 0 0 0 0 0 0 0 4 -2 0 0 0 0 2 + 1512 0.00 -0.14 0 0 2 -2 1 0 -3 3 0 0 0 0 0 0 + 1513 0.02 -0.12 1 0 0 -1 1 0 0 0 0 0 0 0 0 0 + 1514 0.00 -0.14 1 1 2 2 2 0 0 0 0 0 0 0 0 0 + 1515 0.00 0.14 0 0 1 -1 1 0 0 3 -8 3 0 0 0 0 + 1516 0.00 0.14 0 0 2 -1 1 0 0 0 0 0 0 0 0 0 + 1517 0.00 0.13 0 0 2 4 1 0 0 0 0 0 0 0 0 0 + 1518 0.08 -0.06 0 0 0 0 1 0 8 -13 0 0 0 0 0 0 + 1519 0.00 0.13 1 -1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1520 0.00 0.13 0 0 0 0 0 0 0 0 0 0 2 0 0 2 + 1521 0.01 0.13 3 0 2 2 2 0 0 0 0 0 0 0 0 0 + 1522 0.00 0.13 2 0 0 2 1 0 0 0 0 0 0 0 0 0 + 1523 0.00 0.13 1 -1 -2 2 -1 0 0 0 0 0 0 0 0 0 + 1524 -0.02 -0.11 2 0 0 -2 1 0 0 -2 0 3 0 0 0 0 + 1525 0.08 -0.04 0 0 0 1 0 0 0 0 0 0 0 0 0 0 + 1526 0.00 0.13 2 0 0 -4 1 0 0 0 0 0 0 0 0 0 + 1527 0.00 0.13 1 0 0 -4 1 0 0 0 0 0 0 0 0 0 + 1528 0.01 -0.12 2 1 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1529 0.00 0.12 0 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1530 -0.02 -0.11 0 0 0 0 0 0 5 -8 0 0 0 0 0 -1 + 1531 0.00 -0.12 2 0 2 -4 1 0 0 0 0 0 0 0 0 0 + 1532 0.00 -0.12 0 0 0 0 0 0 0 8 -16 4 5 0 0 2 + 1533 0.00 -0.12 0 0 1 -1 1 0 0 -5 8 -3 0 0 0 0 + 1534 0.04 0.08 1 0 0 0 -1 0 -18 16 0 0 0 0 0 0 + 1535 0.00 -0.12 0 0 0 0 0 0 0 1 0 -3 0 0 0 -2 + 1536 0.00 0.12 1 -1 0 -2 -2 0 0 0 0 0 0 0 0 0 + 1537 0.00 -0.12 0 0 0 2 -2 0 0 0 0 0 0 0 0 0 + 1538 0.00 -0.11 0 0 0 0 0 0 6 -8 0 0 0 0 0 -2 + 1539 0.03 -0.09 1 0 0 -4 0 0 0 0 0 0 0 0 0 0 + 1540 0.00 0.11 0 2 0 0 1 0 0 0 0 0 0 0 0 0 + 1541 -0.11 0.00 0 0 0 0 0 0 3 -2 0 0 0 0 0 2 + 1542 0.00 0.11 1 -1 2 2 1 0 0 0 0 0 0 0 0 0 + 1543 0.00 -0.11 1 -1 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1544 0.07 0.05 0 0 0 0 1 0 -8 13 0 0 0 0 0 0 + 1545 0.11 0.00 0 0 0 0 0 0 2 -5 0 0 0 0 0 -2 + 1546 0.00 -0.11 0 0 0 0 0 0 1 -3 0 0 0 0 0 -2 + 1547 0.00 -0.11 4 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1548 0.02 -0.09 0 0 0 0 1 0 0 0 0 -2 5 0 0 0 + 1549 0.00 0.11 2 1 -2 -4 -2 0 0 0 0 0 0 0 0 0 + 1550 0.02 0.09 0 0 0 0 1 0 0 0 0 2 -5 0 0 0 + 1551 0.00 -0.11 0 2 2 -2 1 0 0 0 0 0 0 0 0 0 + 1552 0.00 0.11 1 0 2 0 -1 0 0 0 0 0 0 0 0 0 + 1553 -0.08 -0.02 0 0 0 0 1 0 0 0 0 1 0 0 0 0 + 1554 0.00 -0.10 2 1 0 -2 1 0 0 0 0 0 0 0 0 0 + 1555 0.00 -0.10 2 -1 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1556 -0.03 -0.07 1 0 0 0 1 0 -18 16 0 0 0 0 0 0 + 1557 0.00 0.10 1 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1558 0.00 0.10 2 0 0 -2 2 0 0 0 0 0 0 0 0 0 + 1559 0.00 -0.10 1 -1 -2 -2 -1 0 0 0 0 0 0 0 0 0 + +j = 2 Nb of terms = 36 + + 1560 2038.00 82.26 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1561 155.75 -2.70 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1562 26.92 -0.45 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1563 -24.43 0.46 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 1564 -17.36 -0.50 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + 1565 -8.41 0.01 1 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1566 6.08 -1.36 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 1567 4.59 0.17 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 1568 3.57 -0.06 1 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1569 2.54 0.60 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 + 1570 1.86 0.00 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 1571 -1.52 -0.07 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 1572 1.46 0.04 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 1573 -0.75 -0.02 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1574 -0.75 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 + 1575 -0.71 -0.01 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1576 -0.69 0.02 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 1577 0.61 0.02 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 1578 0.54 -0.04 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1579 -0.56 0.00 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 1580 0.46 -0.02 0 0 2 2 2 0 0 0 0 0 0 0 0 0 + 1581 0.38 -0.01 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 + 1582 0.37 -0.02 2 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1583 -0.34 0.01 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1584 -0.35 0.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1585 -0.31 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 + 1586 0.19 -0.09 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 + 1587 0.26 0.00 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 + 1588 0.24 -0.01 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1589 -0.20 0.00 0 2 0 0 0 0 0 0 0 0 0 0 0 0 + 1590 0.18 -0.01 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1591 0.17 0.00 0 1 0 0 1 0 0 0 0 0 0 0 0 0 + 1592 0.15 0.01 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 + 1593 -0.15 0.00 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 1594 -0.13 0.00 2 0 -2 0 0 0 0 0 0 0 0 0 0 0 + 1595 -0.12 0.00 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 + +j = 3 Nb of terms = 4 + + 1596 1.76 -20.39 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1597 0.00 -1.27 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1598 0.00 -0.22 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1599 0.00 0.20 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + +j = 4 Nb of terms = 1 + + 1600 -0.10 -0.02 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + + + Index: /branches/rel-1-1/psLib/share/tab5.2b.coeff =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2b.coeff (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2b.coeff (revision 12167) @@ -0,0 +1,10 @@ +# Expression for the Y coordinate of the CIP in the GCRS based on the IAU2000A +# precession-nutation model +# +# -------------------------------------------------------------------------------------------------------------- +# +# Y = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# Polynomial part (unit microarcsecond) +-6950.78 -25381.99 -22407250.99 +1842.28 +1113.06 +0.99 Index: /branches/rel-1-1/psLib/share/tab5.2b.dat =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2b.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2b.dat (revision 12167) @@ -0,0 +1,1304 @@ +# Expression for the Y coordinate of the CIP in the GCRS based on the IAU2000A +# precession-nutation model +# +# -------------------------------------------------------------------------------------------------------------- +# +# Y = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# +# -------------------------------------------------------------------------------------------------------------- +# +# Non-polynomial part (unit microarcsecond) +# (ARG being for various combination of the fundamental arguments of the nutation theory) +# +# Sum_i[b_{c,0})_i * cos(ARG) + b_{s,0})_i * sin(ARG)] +# +# + Sum_i)j=1,4 [b_{c,j})_i * t^j * cos(ARG) + b_{s,j})_i * sin(ARG)] * t^j] +# +# The Table below provides the values for b_{s,j})_i and b_{c,j})_i +# +# The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +# and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 +# +# -------------------------------------------------------------------------------------------------------------- +# +# i b_{s,j})_i b_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A +# +# -------------------------------------------------------------------------------------------------------------- +# +0 1538.18 9205236.26 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 -458.66 573033.42 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 137.41 97846.69 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -29.05 -89618.24 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +0 -17.40 22438.42 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +0 31.80 20069.50 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 36.70 12902.66 1 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -13.20 -9592.72 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 +0 -192.40 7387.02 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +0 3.92 -6918.22 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 0.40 -5331.13 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 -0.90 -3323.89 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 7.50 3143.98 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +0 7.80 2636.13 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 -6.60 2554.51 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 -2.00 -2423.59 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 6.80 1645.01 0 0 2 2 2 0 0 0 0 0 0 0 0 0 +0 0.00 -1387.00 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 +0 5.90 1323.81 2 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -0.30 -1233.89 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 0.30 -1075.60 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 -4.48 852.85 0 1 0 0 1 0 0 0 0 0 0 0 0 0 +0 0.10 -800.34 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 35.80 -674.99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +0 -1.40 695.54 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 +0 -0.50 684.99 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -2.62 643.75 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 +0 -1.50 522.11 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 +0 273.50 164.70 0 0 1 -1 1 0 0 -1 0 -2 5 0 0 0 +0 1.40 335.24 0 0 2 2 1 0 0 0 0 0 0 0 0 0 +0 1.90 326.60 1 0 2 2 2 0 0 0 0 0 0 0 0 0 +0 0.40 327.11 0 0 0 2 1 0 0 0 0 0 0 0 0 0 +0 -0.50 -325.03 0 1 2 0 2 0 0 0 0 0 0 0 0 0 +0 -0.40 307.03 0 1 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 0.50 304.17 2 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 -0.10 -304.46 1 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 -0.40 -276.81 2 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 0.90 272.05 0 0 0 2 -1 0 0 0 0 0 0 0 0 0 +0 0.30 272.22 0 1 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 1.20 269.45 2 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 0.10 -220.67 2 0 0 -2 1 0 0 0 0 0 0 0 0 0 +0 128.60 -77.10 0 0 0 0 0 0 0 0 0 2 -5 0 0 -1 +0 0.10 -190.79 0 1 2 -2 1 0 0 0 0 0 0 0 0 0 +0 167.90 0.00 0 1 -1 1 -1 0 0 0 0 0 0 0 0 0 +0 -8.20 -123.48 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 +0 0.10 131.04 2 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +0 0.40 126.64 2 0 0 0 -1 0 0 0 0 0 0 0 0 0 +0 2.90 -122.28 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +0 0.70 123.20 3 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 0.40 123.20 1 -1 2 0 2 0 0 0 0 0 0 0 0 0 +0 -0.30 120.70 1 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 -0.50 112.90 0 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 +0 -0.20 -112.94 2 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 0.20 107.31 1 0 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 -0.30 -106.20 1 1 2 0 2 0 0 0 0 0 0 0 0 0 +0 31.90 -64.10 0 0 1 -1 1 0 -8 12 0 0 0 0 0 0 +0 0.00 89.50 0 0 0 0 0 0 3 -5 0 0 0 0 0 -2 +0 89.10 0.00 1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 +0 0.00 85.32 1 0 0 0 2 0 0 0 0 0 0 0 0 0 +0 -0.20 -71.00 0 0 2 1 2 0 0 0 0 0 0 0 0 0 +0 0.00 -70.01 1 -1 0 -1 -1 0 0 0 0 0 0 0 0 0 +0 13.90 -55.30 1 0 0 -1 0 0 0 0 0 0 0 0 0 0 +0 0.00 67.25 0 2 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 0.40 66.29 1 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-3 4 0 0 0 0 0 0 +1 -0.02 -0.09 0 0 0 0 0 0 4 -6 0 0 0 0 0 -1 +1 0.02 -0.09 0 0 0 0 0 0 1 -1 0 0 0 0 0 -1 +1 -0.11 0.00 0 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 +1 0.11 0.00 2 0 0 -4 -1 0 0 0 0 0 0 0 0 0 +1 0.07 -0.04 0 0 0 0 0 0 0 3 -4 0 0 0 0 0 +1 0.11 0.00 0 0 2 4 1 0 0 0 0 0 0 0 0 0 +1 0.11 0.00 0 0 0 2 -2 0 0 0 0 0 0 0 0 0 +1 -0.11 0.00 3 0 0 0 -1 0 0 0 0 0 0 0 0 0 +1 0.10 0.00 0 0 0 0 0 0 0 1 0 -3 0 0 0 -2 +1 -0.10 0.00 0 0 2 -2 1 0 -3 3 0 0 0 0 0 0 +1 0.10 0.00 0 0 0 0 0 0 6 -8 0 0 0 0 0 -2 +1 0.10 0.00 2 1 0 -4 0 0 0 0 0 0 0 0 0 0 +1 0.10 0.00 0 0 1 -1 1 0 0 3 -8 3 0 0 0 0 +1 0.00 0.10 0 0 0 0 0 0 3 -2 0 0 0 0 0 2 +1 0.00 0.10 0 0 0 0 0 0 2 -5 0 0 0 0 0 -2 +1 -0.10 0.00 4 0 2 -2 2 0 0 0 0 0 0 0 0 0 +1 0.10 0.00 2 0 0 2 1 0 0 0 0 0 0 0 0 0 +1 -0.10 0.00 1 -1 0 -2 -1 0 0 0 0 0 0 0 0 0 +1 0.10 0.00 0 0 0 0 0 0 1 -3 0 0 0 0 0 -2 +2 121.15 -2301.27 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 -0.98 -143.27 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 -0.27 -24.46 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 0.24 22.41 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +2 -1.19 -5.61 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +2 3.57 -1.83 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +2 0.24 -5.02 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 -0.04 -3.23 1 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 -0.48 2.40 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 +2 -0.10 1.73 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +2 -0.01 1.33 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +2 -0.04 0.83 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 -0.05 -0.79 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +2 0.03 -0.66 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 0.00 -0.64 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +2 0.04 0.61 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +2 -0.01 -0.41 0 0 2 2 2 0 0 0 0 0 0 0 0 0 +2 -0.01 0.35 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 +2 -0.01 -0.33 2 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 0.01 0.31 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 0.01 0.27 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +2 -0.07 -0.17 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 +2 0.07 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +2 0.02 -0.21 0 1 0 0 1 0 0 0 0 0 0 0 0 0 +2 0.01 0.20 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +2 0.01 -0.17 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 +2 0.01 -0.16 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 +2 0.00 -0.13 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 +2 -0.07 -0.04 0 0 1 -1 1 0 0 -1 0 -2 5 0 0 0 +2 0.02 0.08 0 1 2 0 2 0 0 0 0 0 0 0 0 0 +3 -15.23 -1.62 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +3 -1.16 -0.01 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +3 -0.20 0.00 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +3 0.18 0.00 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +3 0.13 0.00 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +4 -0.01 0.11 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Index: /branches/rel-1-1/psLib/share/tab5.2b.txt =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2b.txt (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2b.txt (revision 12167) @@ -0,0 +1,1325 @@ +Expression for the Y coordinate of the CIP in the GCRS based on the IAU2000A +precession-nutation model + +-------------------------------------------------------------------------------------------------------------- + +Y = polynomial part + non-polynomial part + +-------------------------------------------------------------------------------------------------------------- + +Polynomial part (unit microarcsecond) + + -6950.78 - 25381.99 t - 22407250.99 t^2 + 1842.28 t^3 + 1113.06 t^4 + 0.99 t^5 + +-------------------------------------------------------------------------------------------------------------- + +Non-polynomial part (unit microarcsecond) +(ARG being for various combination of the fundamental arguments of the nutation theory) + + Sum_i[b_{c,0})_i * cos(ARG) + b_{s,0})_i * sin(ARG)] + ++ Sum_i)j=1,4 [b_{c,j})_i * t^j * cos(ARG) + b_{s,j})_i * sin(ARG)] * t^j] + +The Table below provides the values for b_{s,j})_i and b_{c,j})_i + +The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 + +-------------------------------------------------------------------------------------------------------------- + + i b_{s,j})_i b_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A + +-------------------------------------------------------------------------------------------------------------- + +j = 0 Nb of terms = 962 + + 1 1538.18 9205236.26 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 2 -458.66 573033.42 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 3 137.41 97846.69 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 4 -29.05 -89618.24 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 5 -17.40 22438.42 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 6 31.80 20069.50 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 7 36.70 12902.66 1 0 2 0 2 0 0 0 0 0 0 0 0 0 + 8 -13.20 -9592.72 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 + 9 -192.40 7387.02 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + 10 3.92 -6918.22 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 11 0.40 -5331.13 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 12 -0.90 -3323.89 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 13 7.50 3143.98 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 14 7.80 2636.13 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 15 -6.60 2554.51 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 16 -2.00 -2423.59 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 17 6.80 1645.01 0 0 2 2 2 0 0 0 0 0 0 0 0 0 + 18 0.00 -1387.00 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 + 19 5.90 1323.81 2 0 2 0 2 0 0 0 0 0 0 0 0 0 + 20 -0.30 -1233.89 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 21 0.30 -1075.60 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 22 -4.48 852.85 0 1 0 0 1 0 0 0 0 0 0 0 0 0 + 23 0.10 -800.34 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 + 24 35.80 -674.99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25 -1.40 695.54 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 + 26 -0.50 684.99 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 + 27 -2.62 643.75 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 28 -1.50 522.11 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 29 273.50 164.70 0 0 1 -1 1 0 0 -1 0 -2 5 0 0 0 + 30 1.40 335.24 0 0 2 2 1 0 0 0 0 0 0 0 0 0 + 31 1.90 326.60 1 0 2 2 2 0 0 0 0 0 0 0 0 0 + 32 0.40 327.11 0 0 0 2 1 0 0 0 0 0 0 0 0 0 + 33 -0.50 -325.03 0 1 2 0 2 0 0 0 0 0 0 0 0 0 + 34 -0.40 307.03 0 1 -2 0 -2 0 0 0 0 0 0 0 0 0 + 35 0.50 304.17 2 0 0 -2 -1 0 0 0 0 0 0 0 0 0 + 36 -0.10 -304.46 1 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 37 -0.40 -276.81 2 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 38 0.90 272.05 0 0 0 2 -1 0 0 0 0 0 0 0 0 0 + 39 0.30 272.22 0 1 -2 2 -1 0 0 0 0 0 0 0 0 0 + 40 1.20 269.45 2 0 2 0 1 0 0 0 0 0 0 0 0 0 + 41 0.10 -220.67 2 0 0 -2 1 0 0 0 0 0 0 0 0 0 + 42 128.60 -77.10 0 0 0 0 0 0 0 0 0 2 -5 0 0 -1 + 43 0.10 -190.79 0 1 2 -2 1 0 0 0 0 0 0 0 0 0 + 44 167.90 0.00 0 1 -1 1 -1 0 0 0 0 0 0 0 0 0 + 45 -8.20 -123.48 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 46 0.10 131.04 2 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 47 0.40 126.64 2 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 48 2.90 -122.28 0 0 0 2 0 0 0 0 0 0 0 0 0 0 + 49 0.70 123.20 3 0 2 0 2 0 0 0 0 0 0 0 0 0 + 50 0.40 123.20 1 -1 2 0 2 0 0 0 0 0 0 0 0 0 + 51 -0.30 120.70 1 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 52 -0.50 112.90 0 1 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 53 -0.20 -112.94 2 0 0 0 1 0 0 0 0 0 0 0 0 0 + 54 0.20 107.31 1 0 -2 2 -1 0 0 0 0 0 0 0 0 0 + 55 -0.30 -106.20 1 1 2 0 2 0 0 0 0 0 0 0 0 0 + 56 31.90 -64.10 0 0 1 -1 1 0 -8 12 0 0 0 0 0 0 + 57 0.00 89.50 0 0 0 0 0 0 3 -5 0 0 0 0 0 -2 + 58 89.10 0.00 1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 + 59 0.00 85.32 1 0 0 0 2 0 0 0 0 0 0 0 0 0 + 60 -0.20 -71.00 0 0 2 1 2 0 0 0 0 0 0 0 0 0 + 61 0.00 -70.01 1 -1 0 -1 -1 0 0 0 0 0 0 0 0 0 + 62 13.90 -55.30 1 0 0 -1 0 0 0 0 0 0 0 0 0 0 + 63 0.00 67.25 0 2 -2 2 -1 0 0 0 0 0 0 0 0 0 + 64 0.40 66.29 1 0 2 2 1 0 0 0 0 0 0 0 0 0 + 65 -0.40 64.70 1 0 -2 -4 -2 0 0 0 0 0 0 0 0 0 + 66 1.30 -60.90 2 0 0 0 0 0 0 0 0 0 0 0 0 0 + 67 -0.20 -60.92 1 0 0 0 -2 0 0 0 0 0 0 0 0 0 + 68 0.20 -59.20 2 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 69 1.10 -55.55 0 0 2 0 0 0 0 0 0 0 0 0 0 0 + 70 0.00 -55.60 1 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 71 -0.10 -52.69 2 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 72 -0.20 51.80 2 0 -2 -4 -2 0 0 0 0 0 0 0 0 0 + 73 1.00 -49.51 1 0 0 -1 -1 0 0 0 0 0 0 0 0 0 + 74 0.00 50.50 0 0 0 0 0 0 0 0 0 2 0 0 0 2 + 75 2.50 47.70 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 76 0.10 49.59 1 0 0 2 1 0 0 0 0 0 0 0 0 0 + 77 0.10 -49.00 1 0 -4 0 -2 0 0 0 0 0 0 0 0 0 + 78 -23.20 24.60 0 0 0 0 1 0 0 -1 2 0 0 0 0 0 + 79 0.40 46.50 2 0 2 2 2 0 0 0 0 0 0 0 0 0 + 80 -0.10 -44.04 0 0 2 -2 -1 0 0 0 0 0 0 0 0 0 + 81 -0.10 -42.19 0 1 2 0 1 0 0 0 0 0 0 0 0 0 + 82 13.30 26.90 0 0 0 0 0 0 8 -13 0 0 0 0 0 -1 + 83 -0.10 -39.90 3 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 84 -0.10 -39.50 0 0 4 -2 2 0 0 0 0 0 0 0 0 0 + 85 0.00 -39.11 1 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 86 -0.10 -38.92 2 0 -2 0 1 0 0 0 0 0 0 0 0 0 + 87 0.10 36.95 0 0 2 0 -1 0 0 0 0 0 0 0 0 0 + 88 -0.10 34.59 0 1 -2 0 -1 0 0 0 0 0 0 0 0 0 + 89 0.20 -32.55 0 1 0 0 2 0 0 0 0 0 0 0 0 0 + 90 -0.10 31.61 1 1 0 -2 1 0 0 0 0 0 0 0 0 0 + 91 0.00 30.40 0 0 2 -1 2 0 0 0 0 0 0 0 0 0 + 92 0.20 29.40 0 0 2 4 2 0 0 0 0 0 0 0 0 0 + 93 0.00 -27.91 1 -1 0 0 1 0 0 0 0 0 0 0 0 0 + 94 0.10 27.50 1 0 0 2 -1 0 0 0 0 0 0 0 0 0 + 95 -25.70 -1.70 0 0 1 -1 1 0 0 -1 0 2 -5 0 0 0 + 96 19.90 5.90 0 0 0 0 0 0 0 2 -8 3 0 0 0 -2 + 97 0.00 25.80 1 -1 0 -1 -2 0 0 0 0 0 0 0 0 0 + 98 0.20 25.20 1 -1 2 2 2 0 0 0 0 0 0 0 0 0 + 99 0.00 -25.31 0 1 0 0 -2 0 0 0 0 0 0 0 0 0 + 100 0.20 25.00 3 0 2 0 1 0 0 0 0 0 0 0 0 0 + 101 -0.10 24.40 1 0 2 -4 1 0 0 0 0 0 0 0 0 0 + 102 0.10 -24.40 1 -1 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 103 -23.30 0.90 0 0 2 -2 1 0 -5 6 0 0 0 0 0 0 + 104 -0.10 24.00 1 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 105 -18.00 -5.30 0 0 0 0 0 0 0 6 -8 3 0 0 0 2 + 106 -0.10 -22.80 0 1 2 2 2 0 0 0 0 0 0 0 0 0 + 107 -0.10 22.50 0 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 108 0.10 21.60 1 -1 2 0 1 0 0 0 0 0 0 0 0 0 + 109 0.00 -21.30 0 0 0 0 0 0 4 -6 0 0 0 0 0 -2 + 110 0.10 20.70 2 -1 2 0 2 0 0 0 0 0 0 0 0 0 + 111 0.70 -20.10 0 0 0 0 0 0 0 3 0 -1 0 0 0 2 + 112 0.00 20.51 0 0 0 1 1 0 0 0 0 0 0 0 0 0 + 113 15.90 -4.50 0 0 0 0 1 0 0 -4 8 -3 0 0 0 0 + 114 0.20 -19.94 1 0 0 2 0 0 0 0 0 0 0 0 0 0 + 115 0.00 20.11 0 0 0 2 2 0 0 0 0 0 0 0 0 0 + 116 15.60 4.40 0 0 0 0 1 0 0 4 -8 3 0 0 0 0 + 117 0.00 -20.00 1 -1 -2 0 -2 0 0 0 0 0 0 0 0 0 + 118 0.00 19.80 0 0 0 0 0 0 2 -4 0 0 0 0 0 -2 + 119 0.00 18.91 1 1 0 0 1 0 0 0 0 0 0 0 0 0 + 120 4.30 -14.60 0 0 1 -1 1 0 0 0 -2 0 0 0 0 0 + 121 -0.10 -18.50 1 1 2 0 1 0 0 0 0 0 0 0 0 0 + 122 -0.10 18.40 0 1 0 -2 1 0 0 0 0 0 0 0 0 0 + 123 0.00 18.10 0 3 2 -2 2 0 0 0 0 0 0 0 0 0 + 124 1.00 16.81 0 2 0 0 0 0 0 0 0 0 0 0 0 0 + 125 -0.10 -17.60 2 1 2 0 2 0 0 0 0 0 0 0 0 0 + 126 -17.60 0.00 1 0 -1 0 -2 0 0 0 0 0 0 0 0 0 + 127 -1.30 -16.26 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 + 128 0.00 -17.41 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 + 129 14.50 -2.70 0 0 0 0 0 0 0 0 0 2 0 0 0 1 + 130 0.00 17.08 1 0 0 -2 -2 0 0 0 0 0 0 0 0 0 + 131 0.00 16.21 1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 + 132 0.00 -16.00 0 0 0 0 0 0 2 0 0 0 0 0 0 2 + 133 0.00 -15.31 1 0 -2 2 -2 0 0 0 0 0 0 0 0 0 + 134 0.00 -15.10 2 0 0 -2 -1 0 0 -2 0 2 0 0 0 0 + 135 0.00 14.70 0 0 0 0 0 0 1 1 0 0 0 0 0 2 + 136 0.00 14.40 1 0 2 -1 2 0 0 0 0 0 0 0 0 0 + 137 -0.10 -14.30 1 0 2 1 2 0 0 0 0 0 0 0 0 0 + 138 0.00 -14.40 0 0 2 1 1 0 0 0 0 0 0 0 0 0 + 139 0.00 -13.81 1 0 -2 0 1 0 0 0 0 0 0 0 0 0 + 140 4.50 -9.30 0 0 1 -1 1 0 0 -1 0 0 -1 0 0 0 + 141 -13.80 0.00 0 0 1 0 1 0 0 0 0 0 0 0 0 0 + 142 0.00 -13.38 1 0 0 -2 2 0 0 0 0 0 0 0 0 0 + 143 -0.10 13.10 1 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 + 144 10.30 2.70 0 0 1 -1 1 0 0 -1 0 -1 0 0 0 0 + 145 0.00 12.80 1 0 -2 1 -1 0 0 0 0 0 0 0 0 0 + 146 0.00 -12.80 1 1 2 -2 1 0 0 0 0 0 0 0 0 0 + 147 11.70 0.80 0 0 0 0 0 0 0 0 0 2 -5 0 0 1 + 148 0.00 -12.00 2 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 149 11.30 0.50 0 0 0 0 0 0 5 -8 0 0 0 0 0 -2 + 150 0.00 11.40 0 0 0 0 0 0 0 1 0 1 0 0 0 2 + 151 0.00 -11.20 1 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 152 0.10 10.90 4 0 2 0 2 0 0 0 0 0 0 0 0 0 + 153 0.10 -10.77 1 0 2 0 0 0 0 0 0 0 0 0 0 0 + 154 0.00 -10.80 2 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 155 -0.20 10.47 2 0 -2 0 0 0 0 0 0 0 0 0 0 0 + 156 0.00 10.50 2 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 + 157 0.00 -10.40 1 0 4 -2 2 0 0 0 0 0 0 0 0 0 + 158 0.00 10.40 0 1 2 1 2 0 0 0 0 0 0 0 0 0 + 159 0.00 -10.20 0 1 0 2 1 0 0 0 0 0 0 0 0 0 + 160 0.00 -10.00 1 0 -4 0 -1 0 0 0 0 0 0 0 0 0 + 161 0.00 9.60 1 0 0 -4 -1 0 0 0 0 0 0 0 0 0 + 162 0.10 9.40 2 0 2 2 1 0 0 0 0 0 0 0 0 0 + 163 -7.60 1.70 0 0 0 0 0 0 8 -13 0 0 0 0 0 -2 + 164 -7.70 1.40 0 0 1 -1 1 0 0 -1 0 2 0 0 0 0 + 165 1.40 -7.50 0 0 1 -1 1 0 -5 7 0 0 0 0 0 0 + 166 6.10 -2.70 0 0 0 0 0 0 0 0 0 0 2 0 0 1 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0 0 0 0 0 0 0 + 1053 1.04 0.00 0 0 0 0 0 0 0 0 0 2 0 0 0 2 + 1054 1.02 0.00 1 0 -4 0 -2 0 0 0 0 0 0 0 0 0 + 1055 0.98 -0.01 2 0 2 2 2 0 0 0 0 0 0 0 0 0 + 1056 0.91 0.02 1 0 0 -1 -1 0 0 0 0 0 0 0 0 0 + 1057 0.00 0.93 1 0 -1 0 -1 0 0 0 0 0 0 0 0 0 + 1058 -0.91 0.00 2 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 1059 -0.90 0.00 2 1 0 -2 0 0 0 0 0 0 0 0 0 0 + 1060 0.86 0.00 1 0 0 2 1 0 0 0 0 0 0 0 0 0 + 1061 -0.84 0.00 1 -1 0 -2 0 0 0 0 0 0 0 0 0 0 + 1062 -0.83 0.00 3 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1063 -0.82 0.00 0 0 4 -2 2 0 0 0 0 0 0 0 0 0 + 1064 0.41 0.39 0 0 0 0 1 0 0 -1 2 0 0 0 0 0 + 1065 0.40 -0.38 0 0 0 0 0 0 0 1 -2 0 0 0 0 0 + 1066 0.78 0.00 0 1 -2 2 0 0 0 0 0 0 0 0 0 0 + 1067 0.74 0.00 0 0 2 -2 -1 0 0 0 0 0 0 0 0 0 + 1068 -0.73 0.00 0 1 2 0 1 0 0 0 0 0 0 0 0 0 + 1069 0.68 0.00 1 0 2 -2 0 0 0 0 0 0 0 0 0 0 + 1070 0.66 0.00 1 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1071 -0.64 0.00 2 0 -2 0 1 0 0 0 0 0 0 0 0 0 + 1072 -0.63 0.00 0 1 0 0 2 0 0 0 0 0 0 0 0 0 + 1073 0.63 0.00 0 0 2 -1 2 0 0 0 0 0 0 0 0 0 + 1074 0.62 0.00 0 0 2 4 2 0 0 0 0 0 0 0 0 0 + 1075 0.60 0.00 0 1 0 2 0 0 0 0 0 0 0 0 0 0 + 1076 -0.59 0.00 0 0 2 0 -1 0 0 0 0 0 0 0 0 0 + 1077 -0.59 0.00 0 1 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1078 0.59 0.00 0 1 2 -2 0 0 0 0 0 0 0 0 0 0 + 1079 0.57 0.00 1 0 -2 -2 0 0 0 0 0 0 0 0 0 0 + 1080 0.38 -0.19 0 0 0 0 0 0 8 -13 0 0 0 0 0 -1 + 1081 -0.01 -0.55 0 0 0 0 0 0 2 -3 0 0 0 0 0 0 + 1082 0.44 -0.11 0 0 0 0 0 0 0 0 0 2 -5 0 0 0 + 1083 0.53 0.00 0 0 0 0 0 0 2 -2 0 0 0 0 0 0 + 1084 -0.53 0.00 1 -1 0 -1 -2 0 0 0 0 0 0 0 0 0 + 1085 0.52 0.00 1 -1 2 2 2 0 0 0 0 0 0 0 0 0 + 1086 -0.52 0.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 + 1087 0.53 0.00 0 1 0 0 -2 0 0 0 0 0 0 0 0 0 + 1088 0.52 0.00 1 1 0 -2 1 0 0 0 0 0 0 0 0 0 + 1089 0.51 0.00 1 0 -2 2 0 0 0 0 0 0 0 0 0 0 + 1090 0.51 0.00 1 -1 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1091 -0.21 -0.30 0 0 0 0 0 0 8 -13 0 0 0 0 0 0 + 1092 -0.50 0.00 0 1 0 1 0 0 0 0 0 0 0 0 0 0 + 1093 -0.11 0.37 0 0 0 0 0 0 0 2 -8 3 0 0 0 -2 + 1094 -0.11 0.37 0 0 0 0 0 0 0 6 -8 3 0 0 0 2 + 1095 -0.48 0.00 0 1 2 2 2 0 0 0 0 0 0 0 0 0 + 1096 -0.46 -0.01 0 0 0 0 0 0 0 3 0 -1 0 0 0 2 + 1097 -0.47 0.00 1 -1 0 0 1 0 0 0 0 0 0 0 0 0 + 1098 -0.03 0.43 0 0 1 -1 1 0 0 -1 0 2 -5 0 0 0 + 1099 0.45 0.00 3 0 2 0 1 0 0 0 0 0 0 0 0 0 + 1100 -0.44 0.00 0 0 0 4 0 0 0 0 0 0 0 0 0 0 + 1101 -0.44 0.00 1 0 0 2 -1 0 0 0 0 0 0 0 0 0 + 1102 -0.44 0.00 1 -1 0 2 0 0 0 0 0 0 0 0 0 0 + 1103 0.43 0.00 2 -1 2 0 2 0 0 0 0 0 0 0 0 0 + 1104 0.44 0.00 0 0 0 0 0 0 4 -6 0 0 0 0 0 -2 + 1105 0.42 0.00 0 0 0 2 2 0 0 0 0 0 0 0 0 0 + 1106 -0.42 0.00 1 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 1107 0.41 0.00 1 -1 -2 0 -2 0 0 0 0 0 0 0 0 0 + 1108 -0.41 0.00 0 0 0 0 0 0 2 -4 0 0 0 0 0 -2 + 1109 0.02 0.39 0 0 2 -2 1 0 -5 6 0 0 0 0 0 0 + 1110 0.40 0.00 1 0 2 -4 1 0 0 0 0 0 0 0 0 0 + 1111 -0.40 0.00 0 1 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 1112 -0.39 0.00 2 0 0 -2 0 0 0 -2 0 2 0 0 0 0 + 1113 0.39 0.00 0 3 2 -2 2 0 0 0 0 0 0 0 0 0 + 1114 0.15 -0.24 0 0 0 0 0 0 0 1 0 -2 0 0 0 0 + 1115 -0.37 -0.01 0 0 0 0 0 0 0 2 0 -2 0 0 0 0 + 1116 0.37 0.00 1 -1 2 0 1 0 0 0 0 0 0 0 0 0 + 1117 -0.37 0.00 0 0 2 2 0 0 0 0 0 0 0 0 0 0 + 1118 -0.37 0.00 2 1 2 0 2 0 0 0 0 0 0 0 0 0 + 1119 -0.31 0.06 2 0 0 -2 0 0 0 -2 0 3 0 0 0 0 + 1120 -0.35 0.00 1 0 0 -2 -2 0 0 0 0 0 0 0 0 0 + 1121 0.35 0.00 0 0 0 1 1 0 0 0 0 0 0 0 0 0 + 1122 -0.07 -0.27 0 0 0 0 1 0 0 -4 8 -3 0 0 0 0 + 1123 -0.33 0.01 0 0 0 0 0 0 2 0 0 0 0 0 0 2 + 1124 -0.33 0.00 2 -1 0 0 0 0 0 0 0 0 0 0 0 0 + 1125 0.07 -0.26 0 0 0 0 1 0 0 4 -8 3 0 0 0 0 + 1126 0.33 0.00 0 0 0 0 0 0 0 2 -2 0 0 0 0 0 + 1127 0.00 -0.32 1 0 -1 0 -2 0 0 0 0 0 0 0 0 0 + 1128 0.32 0.00 1 1 0 0 1 0 0 0 0 0 0 0 0 0 + 1129 -0.32 0.00 1 1 2 0 1 0 0 0 0 0 0 0 0 0 + 1130 0.32 0.00 1 0 -2 2 -2 0 0 0 0 0 0 0 0 0 + 1131 -0.24 -0.07 0 0 1 -1 1 0 0 0 -2 0 0 0 0 0 + 1132 0.24 0.07 0 0 1 -1 0 0 0 0 -2 0 0 0 0 0 + 1133 0.30 0.00 0 0 0 0 0 0 1 1 0 0 0 0 0 2 + 1134 0.08 -0.22 0 0 0 0 0 0 0 0 0 1 0 0 0 0 + 1135 -0.30 0.00 1 0 2 1 2 0 0 0 0 0 0 0 0 0 + 1136 -0.30 0.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 + 1137 0.30 0.00 0 1 0 -2 1 0 0 0 0 0 0 0 0 0 + 1138 0.30 0.00 1 0 2 -1 2 0 0 0 0 0 0 0 0 0 + 1139 0.00 -0.29 0 0 0 0 0 0 3 -4 0 0 0 0 0 0 + 1140 0.00 -0.29 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 + 1141 0.20 -0.09 1 0 0 0 0 0 -18 16 0 0 0 0 0 0 + 1142 0.29 0.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 + 1143 -0.05 -0.24 0 0 0 0 0 0 0 0 0 2 0 0 0 1 + 1144 0.29 0.00 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 + 1145 -0.27 0.00 1 0 0 -2 2 0 0 0 0 0 0 0 0 0 + 1146 -0.19 -0.08 1 0 0 0 0 0 -10 3 0 0 0 0 0 0 + 1147 -0.27 0.00 1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 + 1148 0.25 0.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 + 1149 0.25 0.00 2 0 0 -2 -1 0 0 -2 0 2 0 0 0 0 + 1150 -0.25 0.00 0 0 2 1 1 0 0 0 0 0 0 0 0 0 + 1151 0.25 0.00 1 2 0 -2 0 0 0 0 0 0 0 0 0 0 + 1152 -0.25 0.00 0 3 0 0 0 0 0 0 0 0 0 0 0 0 + 1153 -0.01 0.23 0 0 0 0 0 0 5 -8 0 0 0 0 0 -2 + 1154 -0.23 0.00 1 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 + 1155 0.23 0.00 0 0 0 0 0 0 0 1 0 1 0 0 0 2 + 1156 0.23 0.00 4 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1157 -0.15 -0.07 0 0 1 -1 1 0 0 -1 0 0 -1 0 0 0 + 1158 -0.23 0.00 1 0 -2 0 1 0 0 0 0 0 0 0 0 0 + 1159 -0.22 0.00 2 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 1160 0.22 0.00 0 1 2 1 2 0 0 0 0 0 0 0 0 0 + 1161 -0.22 0.00 1 1 2 -2 1 0 0 0 0 0 0 0 0 0 + 1162 -0.22 0.00 1 0 4 -2 2 0 0 0 0 0 0 0 0 0 + 1163 0.04 -0.17 0 0 1 -1 1 0 0 -1 0 -1 0 0 0 0 + 1164 -0.01 -0.21 0 0 2 -2 0 0 -5 6 0 0 0 0 0 0 + 1165 0.08 -0.14 0 0 0 0 0 0 0 2 -4 0 0 0 0 0 + 1166 -0.01 0.19 0 0 0 0 0 0 0 0 0 2 -5 0 0 1 + 1167 0.21 0.00 2 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 1168 -0.20 0.00 1 0 -2 1 -1 0 0 0 0 0 0 0 0 0 + 1169 -0.20 0.00 2 -2 0 -2 0 0 0 0 0 0 0 0 0 0 + 1170 -0.04 -0.16 0 0 0 0 0 0 8 -13 0 0 0 0 0 -2 + 1171 0.19 0.00 0 2 0 -2 0 0 0 0 0 0 0 0 0 0 + 1172 0.19 0.00 1 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 1173 -0.19 0.00 2 0 -2 -4 -1 0 0 0 0 0 0 0 0 0 + 1174 0.18 0.00 0 0 0 0 0 0 5 -7 0 0 0 0 0 -2 + 1175 -0.18 0.00 0 1 0 2 1 0 0 0 0 0 0 0 0 0 + 1176 0.18 0.00 1 0 -4 0 -1 0 0 0 0 0 0 0 0 0 + 1177 0.17 0.00 2 0 2 2 1 0 0 0 0 0 0 0 0 0 + 1178 -0.12 0.06 1 0 2 0 2 0 0 1 0 0 0 0 0 0 + 1179 0.13 -0.04 0 0 0 0 0 0 3 -5 0 0 0 0 0 0 + 1180 -0.11 0.06 1 0 -2 0 -2 0 0 4 -8 3 0 0 0 0 + 1181 0.17 0.00 0 0 2 -3 2 0 0 0 0 0 0 0 0 0 + 1182 0.16 0.00 0 0 0 0 0 0 0 4 0 -2 0 0 0 2 + 1183 -0.17 0.00 0 0 4 0 2 0 0 0 0 0 0 0 0 0 + 1184 -0.17 0.00 1 0 0 -4 -1 0 0 0 0 0 0 0 0 0 + 1185 -0.14 0.02 1 0 0 -1 1 0 0 0 0 0 0 0 0 0 + 1186 0.14 0.03 0 0 0 0 0 0 0 2 0 -1 0 0 0 2 + 1187 0.00 0.15 0 0 0 0 0 0 2 -1 0 0 0 0 0 2 + 1188 -0.15 0.00 1 1 -2 -4 -2 0 0 0 0 0 0 0 0 0 + 1189 -0.14 0.01 0 0 0 0 0 0 0 2 0 1 0 0 0 2 + 1190 0.16 0.00 2 0 0 -2 -2 0 0 0 0 0 0 0 0 0 + 1191 -0.06 0.10 0 0 0 0 0 0 8 -11 0 0 0 0 0 -2 + 1192 0.05 0.10 0 0 0 0 0 0 0 8 -16 4 5 0 0 -2 + 1193 0.02 0.13 0 0 1 -1 1 0 0 -1 0 2 0 0 0 0 + 1194 -0.11 0.04 0 0 0 0 0 0 0 8 -16 4 5 0 0 2 + 1195 -0.12 -0.02 0 0 1 -1 1 0 -5 7 0 0 0 0 0 0 + 1196 -0.05 -0.10 0 0 0 0 0 0 0 0 0 0 2 0 0 1 + 1197 0.14 0.00 1 0 2 4 2 0 0 0 0 0 0 0 0 0 + 1198 -0.09 0.05 1 0 0 -2 0 0 19 -21 3 0 0 0 0 0 + 1199 0.00 0.14 0 0 1 0 1 0 0 0 0 0 0 0 0 0 + 1200 0.14 0.00 3 0 0 -4 0 0 0 0 0 0 0 0 0 0 + 1201 -0.14 0.00 1 1 -2 0 -2 0 0 0 0 0 0 0 0 0 + 1202 0.04 0.10 0 0 1 -1 1 0 0 -1 0 0 2 0 0 0 + 1203 -0.06 0.08 0 0 0 0 0 0 0 3 0 -2 0 0 0 2 + 1204 0.05 0.09 0 0 0 0 0 0 8 -15 0 0 0 0 0 -2 + 1205 -0.14 0.00 0 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1206 0.08 0.06 0 0 0 0 0 0 0 1 2 0 0 0 0 2 + 1207 0.14 0.00 0 0 0 4 1 0 0 0 0 0 0 0 0 0 + 1208 0.14 0.00 0 0 2 -4 1 0 0 0 0 0 0 0 0 0 + 1209 0.13 0.00 1 1 0 -4 0 0 0 0 0 0 0 0 0 0 + 1210 -0.07 0.06 0 0 0 0 0 0 0 3 -2 0 0 0 0 2 + 1211 0.11 -0.02 0 0 0 0 0 0 0 0 0 3 0 0 0 2 + 1212 -0.13 0.00 3 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 1213 -0.13 0.00 0 0 0 0 0 0 0 4 -2 0 0 0 0 2 + 1214 -0.13 0.00 1 1 2 2 2 0 0 0 0 0 0 0 0 0 + 1215 -0.13 0.00 0 0 4 -2 1 0 0 0 0 0 0 0 0 0 + 1216 -0.12 0.00 2 0 0 -2 0 0 -3 3 0 0 0 0 0 0 + 1217 0.12 0.00 3 0 2 2 2 0 0 0 0 0 0 0 0 0 + 1218 0.12 0.00 0 0 0 0 0 0 0 0 0 0 2 0 0 2 + 1219 -0.12 0.00 2 1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1220 0.00 -0.12 1 0 0 -1 0 0 -3 4 0 0 0 0 0 0 + 1221 -0.02 -0.09 0 0 0 0 0 0 4 -6 0 0 0 0 0 -1 + 1222 0.02 -0.09 0 0 0 0 0 0 1 -1 0 0 0 0 0 -1 + 1223 -0.11 0.00 0 2 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1224 0.11 0.00 2 0 0 -4 -1 0 0 0 0 0 0 0 0 0 + 1225 0.07 -0.04 0 0 0 0 0 0 0 3 -4 0 0 0 0 0 + 1226 0.11 0.00 0 0 2 4 1 0 0 0 0 0 0 0 0 0 + 1227 0.11 0.00 0 0 0 2 -2 0 0 0 0 0 0 0 0 0 + 1228 -0.11 0.00 3 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 1229 0.10 0.00 0 0 0 0 0 0 0 1 0 -3 0 0 0 -2 + 1230 -0.10 0.00 0 0 2 -2 1 0 -3 3 0 0 0 0 0 0 + 1231 0.10 0.00 0 0 0 0 0 0 6 -8 0 0 0 0 0 -2 + 1232 0.10 0.00 2 1 0 -4 0 0 0 0 0 0 0 0 0 0 + 1233 0.10 0.00 0 0 1 -1 1 0 0 3 -8 3 0 0 0 0 + 1234 0.00 0.10 0 0 0 0 0 0 3 -2 0 0 0 0 0 2 + 1235 0.00 0.10 0 0 0 0 0 0 2 -5 0 0 0 0 0 -2 + 1236 -0.10 0.00 4 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1237 0.10 0.00 2 0 0 2 1 0 0 0 0 0 0 0 0 0 + 1238 -0.10 0.00 1 -1 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1239 0.10 0.00 0 0 0 0 0 0 1 -3 0 0 0 0 0 -2 + +j = 2 Nb of terms = 30 + + 1240 121.15 -2301.27 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1241 -0.98 -143.27 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1242 -0.27 -24.46 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1243 0.24 22.41 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 1244 -1.19 -5.61 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 1245 3.57 -1.83 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + 1246 0.24 -5.02 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 1247 -0.04 -3.23 1 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1248 -0.48 2.40 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 + 1249 -0.10 1.73 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 1250 -0.01 1.33 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 1251 -0.04 0.83 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1252 -0.05 -0.79 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 1253 0.03 -0.66 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 1254 0.00 -0.64 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 1255 0.04 0.61 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1256 -0.01 -0.41 0 0 2 2 2 0 0 0 0 0 0 0 0 0 + 1257 -0.01 0.35 0 2 -2 2 -2 0 0 0 0 0 0 0 0 0 + 1258 -0.01 -0.33 2 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1259 0.01 0.31 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1260 0.01 0.27 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 1261 -0.07 -0.17 0 2 2 -2 2 0 0 0 0 0 0 0 0 0 + 1262 0.07 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1263 0.02 -0.21 0 1 0 0 1 0 0 0 0 0 0 0 0 0 + 1264 0.01 0.20 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 + 1265 0.01 -0.17 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 + 1266 0.01 -0.16 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 1267 0.00 -0.13 1 0 -2 -2 -1 0 0 0 0 0 0 0 0 0 + 1268 -0.07 -0.04 0 0 1 -1 1 0 0 -1 0 -2 5 0 0 0 + 1269 0.02 0.08 0 1 2 0 2 0 0 0 0 0 0 0 0 0 + +j = 3 Nb of terms = 5 + + 1270 -15.23 -1.62 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 1271 -1.16 -0.01 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 1272 -0.20 0.00 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 1273 0.18 0.00 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 1274 0.13 0.00 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + +j = 4 Nb of terms = 1 + + 1275 -0.01 0.11 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + + + Index: /branches/rel-1-1/psLib/share/tab5.2c.coeff =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2c.coeff (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2c.coeff (revision 12167) @@ -0,0 +1,13 @@ +# Expression for the quantity s(t)+XY/2 based on the IAU2000A precession-nutation +# model +# +# +# Updated Table (12/11/2003) for ensuring continuity of UT1 on 1st January 2003 +# +# -------------------------------------------------------------------------------------------------------------- +# +# s + XY/2 = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# Polynomial part (unit microarcsecond) +94.0 +3808.35 -119.94 -72574.09 +27.70 +15.61 Index: /branches/rel-1-1/psLib/share/tab5.2c.dat =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2c.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2c.dat (revision 12167) @@ -0,0 +1,100 @@ +# Expression for the quantity s(t)+XY/2 based on the IAU2000A precession-nutation +# model +# +# +# Updated Table (12/11/2003) for ensuring continuity of UT1 on 1st January 2003 +# +# -------------------------------------------------------------------------------------------------------------- +# +# s + XY/2 = polynomial part + non-polynomial part +# +# -------------------------------------------------------------------------------------------------------------- +# +# -------------------------------------------------------------------------------------------------------------- +# +# Non-polynomial part (unit microarcsecond) +# (ARG being for various combination of the fundamental arguments of the nutation theory) +# +# Sum_i[C_{s,0})_i * sin(ARG) + C_{c,0})_i * cos(ARG)] +# +# + Sum_i)j=1,4 [C_{s,j})_i * t^j * sin(ARG) + C_{c,j})_i * cos(ARG)] * t^j] +# +# The Table below provides the values for C_{s,j})_i and C_{c,j})_i +# +# Cutoff (0.1 microarcsecond and periods less than 500 years) +# +# The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +# and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 +# +# -------------------------------------------------------------------------------------------------------------- +# +# i C_{s,j})_i C_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A +# +# -------------------------------------------------------------------------------------------------------------- +# +0 -2640.73 0.39 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 -63.53 0.02 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +0 -11.75 -0.01 0 0 2 -2 3 0 0 0 0 0 0 0 0 0 +0 -11.21 -0.01 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +0 4.57 0.00 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -2.02 0.00 0 0 2 0 3 0 0 0 0 0 0 0 0 0 +0 -1.98 0.00 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 1.72 0.00 0 0 0 0 3 0 0 0 0 0 0 0 0 0 +0 1.41 0.01 0 1 0 0 1 0 0 0 0 0 0 0 0 0 +0 1.26 0.01 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 +0 0.63 0.00 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +0 0.63 0.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +0 -0.46 0.00 0 1 2 -2 3 0 0 0 0 0 0 0 0 0 +0 -0.45 0.00 0 1 2 -2 1 0 0 0 0 0 0 0 0 0 +0 -0.36 0.00 0 0 4 -4 4 0 0 0 0 0 0 0 0 0 +0 0.24 0.12 0 0 1 -1 1 0 -8 12 0 0 0 0 0 0 +0 -0.32 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 +0 -0.28 0.00 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +0 -0.27 0.00 1 0 2 0 3 0 0 0 0 0 0 0 0 0 +0 -0.26 0.00 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +0 0.21 0.00 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 +0 -0.19 0.00 0 1 -2 2 -3 0 0 0 0 0 0 0 0 0 +0 -0.18 0.00 0 1 -2 2 -1 0 0 0 0 0 0 0 0 0 +0 0.10 -0.05 0 0 0 0 0 0 8 -13 0 0 0 0 0 -1 +0 -0.15 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +0 0.14 0.00 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +0 0.14 0.00 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +0 -0.14 0.00 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 +0 -0.14 0.00 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 +0 -0.13 0.00 0 0 4 -2 4 0 0 0 0 0 0 0 0 0 +0 0.11 0.00 0 0 2 -2 4 0 0 0 0 0 0 0 0 0 +0 -0.11 0.00 1 0 -2 0 -3 0 0 0 0 0 0 0 0 0 +0 -0.11 0.00 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +1 -0.07 3.57 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +1 1.71 -0.03 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +1 0.00 0.48 0 0 2 -2 3 0 0 0 0 0 0 0 0 0 +2 743.53 -0.17 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 56.91 0.06 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 9.84 -0.01 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 -8.85 0.01 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +2 -6.38 -0.05 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +2 -3.07 0.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +2 2.23 0.00 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 +2 1.67 0.00 0 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 1.30 0.00 1 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 0.93 0.00 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 +2 0.68 0.00 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 +2 -0.55 0.00 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 +2 0.53 0.00 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 +2 -0.27 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +2 -0.27 0.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 +2 -0.26 0.00 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 +2 -0.25 0.00 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 +2 0.22 0.00 1 0 2 0 1 0 0 0 0 0 0 0 0 0 +2 -0.21 0.00 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 +2 0.20 0.00 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 +2 0.17 0.00 0 0 2 2 2 0 0 0 0 0 0 0 0 0 +2 0.13 0.00 2 0 2 0 2 0 0 0 0 0 0 0 0 0 +2 -0.13 0.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 +2 -0.12 0.00 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 +2 -0.11 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 +3 0.30 -23.51 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +3 -0.03 -1.39 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 +3 -0.01 -0.24 0 0 2 0 2 0 0 0 0 0 0 0 0 0 +3 0.00 0.22 0 0 0 0 2 0 0 0 0 0 0 0 0 0 +4 -0.26 -0.01 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Index: /branches/rel-1-1/psLib/share/tab5.2c.txt =================================================================== --- /branches/rel-1-1/psLib/share/tab5.2c.txt (revision 12167) +++ /branches/rel-1-1/psLib/share/tab5.2c.txt (revision 12167) @@ -0,0 +1,121 @@ +Expression for the quantity s(t)+XY/2 based on the IAU2000A precession-nutation +model + + +Updated Table (12/11/2003) for ensuring continuity of UT1 on 1st January 2003 + +-------------------------------------------------------------------------------------------------------------- + +s + XY/2 = polynomial part + non-polynomial part + +-------------------------------------------------------------------------------------------------------------- + +Polynomial part (unit microarcsecond) + + 94.0 + 3808.35 t - 119.94 t^2 - 72574.09 t^3 + 27.70 t^4 + 15.61 t^5 + +-------------------------------------------------------------------------------------------------------------- + +Non-polynomial part (unit microarcsecond) +(ARG being for various combination of the fundamental arguments of the nutation theory) + + Sum_i[C_{s,0})_i * sin(ARG) + C_{c,0})_i * cos(ARG)] + ++ Sum_i)j=1,4 [C_{s,j})_i * t^j * sin(ARG) + C_{c,j})_i * cos(ARG)] * t^j] + +The Table below provides the values for C_{s,j})_i and C_{c,j})_i + +Cutoff (0.1 microarcsecond and periods less than 500 years) + +The expressions for the fundamental arguments appearing in columns 4 to 8 (luni-solar part) +and in columns 6 to 17 (planetary part) are those of the IERS Conventions 2000 + +-------------------------------------------------------------------------------------------------------------- + + i C_{s,j})_i C_{c,j})_i l l' F D Om L_Me L_Ve L_E L_Ma L_J L_Sa L_U L_Ne p_A + +-------------------------------------------------------------------------------------------------------------- + +j = 0 Nb of terms = 33 + + 1 -2640.73 0.39 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 2 -63.53 0.02 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 3 -11.75 -0.01 0 0 2 -2 3 0 0 0 0 0 0 0 0 0 + 4 -11.21 -0.01 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 5 4.57 0.00 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 6 -2.02 0.00 0 0 2 0 3 0 0 0 0 0 0 0 0 0 + 7 -1.98 0.00 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 8 1.72 0.00 0 0 0 0 3 0 0 0 0 0 0 0 0 0 + 9 1.41 0.01 0 1 0 0 1 0 0 0 0 0 0 0 0 0 + 10 1.26 0.01 0 1 0 0 -1 0 0 0 0 0 0 0 0 0 + 11 0.63 0.00 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 12 0.63 0.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 13 -0.46 0.00 0 1 2 -2 3 0 0 0 0 0 0 0 0 0 + 14 -0.45 0.00 0 1 2 -2 1 0 0 0 0 0 0 0 0 0 + 15 -0.36 0.00 0 0 4 -4 4 0 0 0 0 0 0 0 0 0 + 16 0.24 0.12 0 0 1 -1 1 0 -8 12 0 0 0 0 0 0 + 17 -0.32 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 + 18 -0.28 0.00 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 19 -0.27 0.00 1 0 2 0 3 0 0 0 0 0 0 0 0 0 + 20 -0.26 0.00 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 21 0.21 0.00 0 0 2 -2 0 0 0 0 0 0 0 0 0 0 + 22 -0.19 0.00 0 1 -2 2 -3 0 0 0 0 0 0 0 0 0 + 23 -0.18 0.00 0 1 -2 2 -1 0 0 0 0 0 0 0 0 0 + 24 0.10 -0.05 0 0 0 0 0 0 8 -13 0 0 0 0 0 -1 + 25 -0.15 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 + 26 0.14 0.00 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 27 0.14 0.00 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 28 -0.14 0.00 1 0 0 -2 1 0 0 0 0 0 0 0 0 0 + 29 -0.14 0.00 1 0 0 -2 -1 0 0 0 0 0 0 0 0 0 + 30 -0.13 0.00 0 0 4 -2 4 0 0 0 0 0 0 0 0 0 + 31 0.11 0.00 0 0 2 -2 4 0 0 0 0 0 0 0 0 0 + 32 -0.11 0.00 1 0 -2 0 -3 0 0 0 0 0 0 0 0 0 + 33 -0.11 0.00 1 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + +j = 1 Nb of terms = 3 + + 34 -0.07 3.57 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 35 1.71 -0.03 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 36 0.00 0.48 0 0 2 -2 3 0 0 0 0 0 0 0 0 0 + +j = 2 Nb of terms = 25 + + 37 743.53 -0.17 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 38 56.91 0.06 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 39 9.84 -0.01 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 40 -8.85 0.01 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + 41 -6.38 -0.05 0 1 0 0 0 0 0 0 0 0 0 0 0 0 + 42 -3.07 0.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 + 43 2.23 0.00 0 1 2 -2 2 0 0 0 0 0 0 0 0 0 + 44 1.67 0.00 0 0 2 0 1 0 0 0 0 0 0 0 0 0 + 45 1.30 0.00 1 0 2 0 2 0 0 0 0 0 0 0 0 0 + 46 0.93 0.00 0 1 -2 2 -2 0 0 0 0 0 0 0 0 0 + 47 0.68 0.00 1 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 48 -0.55 0.00 0 0 2 -2 1 0 0 0 0 0 0 0 0 0 + 49 0.53 0.00 1 0 -2 0 -2 0 0 0 0 0 0 0 0 0 + 50 -0.27 0.00 0 0 0 2 0 0 0 0 0 0 0 0 0 0 + 51 -0.27 0.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 + 52 -0.26 0.00 1 0 -2 -2 -2 0 0 0 0 0 0 0 0 0 + 53 -0.25 0.00 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 + 54 0.22 0.00 1 0 2 0 1 0 0 0 0 0 0 0 0 0 + 55 -0.21 0.00 2 0 0 -2 0 0 0 0 0 0 0 0 0 0 + 56 0.20 0.00 2 0 -2 0 -1 0 0 0 0 0 0 0 0 0 + 57 0.17 0.00 0 0 2 2 2 0 0 0 0 0 0 0 0 0 + 58 0.13 0.00 2 0 2 0 2 0 0 0 0 0 0 0 0 0 + 59 -0.13 0.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 + 60 -0.12 0.00 1 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 61 -0.11 0.00 0 0 2 0 0 0 0 0 0 0 0 0 0 0 + +j = 3 Nb of terms = 4 + + 62 0.30 -23.51 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + 63 -0.03 -1.39 0 0 2 -2 2 0 0 0 0 0 0 0 0 0 + 64 -0.01 -0.24 0 0 2 0 2 0 0 0 0 0 0 0 0 0 + 65 0.00 0.22 0 0 0 0 2 0 0 0 0 0 0 0 0 0 + +j = 4 Nb of terms = 1 + + 66 -0.26 -0.01 0 0 0 0 1 0 0 0 0 0 0 0 0 0 + + + Index: /branches/rel-1-1/psLib/share/tai_utc.dat =================================================================== --- /branches/rel-1-1/psLib/share/tai_utc.dat (revision 12167) +++ /branches/rel-1-1/psLib/share/tai_utc.dat (revision 12167) @@ -0,0 +1,50 @@ +# tai-utc.dat +# +# This file comes from http://maia.usno.navy.mil (Click on table of leap seconds since 1961). This file may +# also be directly downloaded from ftp://maia.usno.navy.mil/ser7/tai-utc.dat. See readme.tai-utc (located in +# the psLib/data directory) for details. +# +# @author Ross Harman, MHPCC +# +# @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +# @date $Date: 2006-09-23 02:20:18 $ +# +# JD TAI-UTC Const 1 Const 2 +# (days) (sec) (none) (none) +# psF64 psF64 psF64 psF64 + 2437300.5 1.4228180 37300.0 0.0012960 + 2437512.5 1.3728180 37300.0 0.0012960 + 2437665.5 1.8458580 37665.0 0.0011232 + 2438334.5 1.9458580 37665.0 0.0011232 + 2438395.5 3.2401300 38761.0 0.0012960 + 2438486.5 3.3401300 38761.0 0.0012960 + 2438639.5 3.4401300 38761.0 0.0012960 + 2438761.5 3.5401300 38761.0 0.0012960 + 2438820.5 3.6401300 38761.0 0.0012960 + 2438942.5 3.7401300 38761.0 0.0012960 + 2439004.5 3.8401300 38761.0 0.0012960 + 2439126.5 4.3131700 39126.0 0.0025920 + 2439887.5 4.2131700 39126.0 0.0025920 + 2441317.5 10.0000000 41317.0 0.0000000 + 2441499.5 11.0000000 41317.0 0.0000000 + 2441683.5 12.0000000 41317.0 0.0000000 + 2442048.5 13.0000000 41317.0 0.0000000 + 2442413.5 14.0000000 41317.0 0.0000000 + 2442778.5 15.0000000 41317.0 0.0000000 + 2443144.5 16.0000000 41317.0 0.0000000 + 2443509.5 17.0000000 41317.0 0.0000000 + 2443874.5 18.0000000 41317.0 0.0000000 + 2444239.5 19.0000000 41317.0 0.0000000 + 2444786.5 20.0000000 41317.0 0.0000000 + 2445151.5 21.0000000 41317.0 0.0000000 + 2445516.5 22.0000000 41317.0 0.0000000 + 2446247.5 23.0000000 41317.0 0.0000000 + 2447161.5 24.0000000 41317.0 0.0000000 + 2447892.5 25.0000000 41317.0 0.0000000 + 2448257.5 26.0000000 41317.0 0.0000000 + 2448804.5 27.0000000 41317.0 0.0000000 + 2449169.5 28.0000000 41317.0 0.0000000 + 2449534.5 29.0000000 41317.0 0.0000000 + 2450083.5 30.0000000 41317.0 0.0000000 + 2450630.5 31.0000000 41317.0 0.0000000 + 2451179.5 32.0000000 41317.0 0.0000000 Index: /branches/rel-1-1/psLib/share/tai_utc.raw =================================================================== --- /branches/rel-1-1/psLib/share/tai_utc.raw (revision 12167) +++ /branches/rel-1-1/psLib/share/tai_utc.raw (revision 12167) @@ -0,0 +1,36 @@ + 1961 JAN 1 =JD 2437300.5 TAI-UTC= 1.4228180 S + (MJD - 37300.) X 0.001296 S + 1961 AUG 1 =JD 2437512.5 TAI-UTC= 1.3728180 S + (MJD - 37300.) X 0.001296 S + 1962 JAN 1 =JD 2437665.5 TAI-UTC= 1.8458580 S + (MJD - 37665.) X 0.0011232S + 1963 NOV 1 =JD 2438334.5 TAI-UTC= 1.9458580 S + (MJD - 37665.) X 0.0011232S + 1964 JAN 1 =JD 2438395.5 TAI-UTC= 3.2401300 S + (MJD - 38761.) X 0.001296 S + 1964 APR 1 =JD 2438486.5 TAI-UTC= 3.3401300 S + (MJD - 38761.) X 0.001296 S + 1964 SEP 1 =JD 2438639.5 TAI-UTC= 3.4401300 S + (MJD - 38761.) X 0.001296 S + 1965 JAN 1 =JD 2438761.5 TAI-UTC= 3.5401300 S + (MJD - 38761.) X 0.001296 S + 1965 MAR 1 =JD 2438820.5 TAI-UTC= 3.6401300 S + (MJD - 38761.) X 0.001296 S + 1965 JUL 1 =JD 2438942.5 TAI-UTC= 3.7401300 S + (MJD - 38761.) X 0.001296 S + 1965 SEP 1 =JD 2439004.5 TAI-UTC= 3.8401300 S + (MJD - 38761.) X 0.001296 S + 1966 JAN 1 =JD 2439126.5 TAI-UTC= 4.3131700 S + (MJD - 39126.) X 0.002592 S + 1968 FEB 1 =JD 2439887.5 TAI-UTC= 4.2131700 S + (MJD - 39126.) X 0.002592 S + 1972 JAN 1 =JD 2441317.5 TAI-UTC= 10.0 S + (MJD - 41317.) X 0.0 S + 1972 JUL 1 =JD 2441499.5 TAI-UTC= 11.0 S + (MJD - 41317.) X 0.0 S + 1973 JAN 1 =JD 2441683.5 TAI-UTC= 12.0 S + (MJD - 41317.) X 0.0 S + 1974 JAN 1 =JD 2442048.5 TAI-UTC= 13.0 S + (MJD - 41317.) X 0.0 S + 1975 JAN 1 =JD 2442413.5 TAI-UTC= 14.0 S + (MJD - 41317.) X 0.0 S + 1976 JAN 1 =JD 2442778.5 TAI-UTC= 15.0 S + (MJD - 41317.) X 0.0 S + 1977 JAN 1 =JD 2443144.5 TAI-UTC= 16.0 S + (MJD - 41317.) X 0.0 S + 1978 JAN 1 =JD 2443509.5 TAI-UTC= 17.0 S + (MJD - 41317.) X 0.0 S + 1979 JAN 1 =JD 2443874.5 TAI-UTC= 18.0 S + (MJD - 41317.) X 0.0 S + 1980 JAN 1 =JD 2444239.5 TAI-UTC= 19.0 S + (MJD - 41317.) X 0.0 S + 1981 JUL 1 =JD 2444786.5 TAI-UTC= 20.0 S + (MJD - 41317.) X 0.0 S + 1982 JUL 1 =JD 2445151.5 TAI-UTC= 21.0 S + (MJD - 41317.) X 0.0 S + 1983 JUL 1 =JD 2445516.5 TAI-UTC= 22.0 S + (MJD - 41317.) X 0.0 S + 1985 JUL 1 =JD 2446247.5 TAI-UTC= 23.0 S + (MJD - 41317.) X 0.0 S + 1988 JAN 1 =JD 2447161.5 TAI-UTC= 24.0 S + (MJD - 41317.) X 0.0 S + 1990 JAN 1 =JD 2447892.5 TAI-UTC= 25.0 S + (MJD - 41317.) X 0.0 S + 1991 JAN 1 =JD 2448257.5 TAI-UTC= 26.0 S + (MJD - 41317.) X 0.0 S + 1992 JUL 1 =JD 2448804.5 TAI-UTC= 27.0 S + (MJD - 41317.) X 0.0 S + 1993 JUL 1 =JD 2449169.5 TAI-UTC= 28.0 S + (MJD - 41317.) X 0.0 S + 1994 JUL 1 =JD 2449534.5 TAI-UTC= 29.0 S + (MJD - 41317.) X 0.0 S + 1996 JAN 1 =JD 2450083.5 TAI-UTC= 30.0 S + (MJD - 41317.) X 0.0 S + 1997 JUL 1 =JD 2450630.5 TAI-UTC= 31.0 S + (MJD - 41317.) X 0.0 S + 1999 JAN 1 =JD 2451179.5 TAI-UTC= 32.0 S + (MJD - 41317.) X 0.0 S Index: /branches/rel-1-1/psLib/src/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/.cvsignore (revision 12167) @@ -0,0 +1,14 @@ +DoxygenLog +Makefile.in +.deps +.libs +Makefile +config.h +*.la +*.lo +stamp-h1 +libpslib.la.temp +config.h.in +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/Makefile.am (revision 12167) @@ -0,0 +1,23 @@ +SUBDIRS = $(SRCDIRS) + +lib_LTLIBRARIES = libpslib.la + +libpslib_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) +libpslib_la_LIBADD = $(SRCSUBLIBS) $(PSLIB_LIBS) +libpslib_la_DEPENDENCIES = $(SRCSUBLIBS) +libpslib_la_SOURCES = +libpslib_la_LDFLAGS = -version-info $(PSLIB_LT_VERSION) + + +EXTRA_DIST = mainpage.dox psErrorCodes_en.dat + +pkginclude_HEADERS = \ + pslib.h \ + pslib_strict.h + +install-exec-local: libpslib.la + $(PERL) -pe "s|(^dependency_libs=.*)|dependency_libs=\'$(PSLIB_LIBS)\'|" libpslib.la > libpslib.la.temp + cp libpslib.la.temp libpslib.la + rm -f libpslib.la.temp + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/TestCoverage =================================================================== --- /branches/rel-1-1/psLib/src/TestCoverage (revision 12167) +++ /branches/rel-1-1/psLib/src/TestCoverage (revision 12167) @@ -0,0 +1,236 @@ +#!/usr/bin/perl +# +# This is a perl script +# +# SYNOPSIS: SlocCount options topLevelDirectory +# +# where options = +# --verbose Display extra information to user +# --noverbose Don't display extra information to user +# --recursiv e Recursively run tests in directory tree +# --norecursive Test only the specified or current directory +# --silent Don't display any information to user +# --nosilent Display progress of script to user +# +# arguements = directory(ies) to perform software line count +# +# RETURN : zero upon successful parsing of directories +# +# $Revision: 1.4 $ $Name: not supported by cvs2svn $ +# $Date: 2005-09-23 19:03:12 $ +# +# Copyright 2004 Maui High Performance Computing Center, University of Hawaii +# +############################################################################## + +# Provide functions for determining the pathname of current working directory +use Cwd; + +# Provides functions for handling long command line options +use Getopt::Long; + +# Assign variables based on the presence of command line options to the script +# The ! option allows for --nooption to be set to zero +# (e.g. --noverbose --recursive causes $verbose=0 and $recursive=1) +GetOptions("verbose!"=>\$verbose, + "recursive!"=>\$recursive, + "silent!"=>\$silent); + +# Check if both silent and verbose options are set and if so stop the script +die "Can't specify both verbose and silent options." if ($verbose && $silent); + +# Initialize variables for counting the total lines of code, files +$cFileCount = 0; + +# Initialize variable indicating how many arguements were passed +$args = 0; + +open(COVFILE, "> coverageFileResult.txt"); + +# Loop through all the arguements passed to the script +foreach (@ARGV) { + # Remove newline if there is one + chomp; + # Increment number of arguements found + $args++; + # Set variable to current working directory + $cwd = cwd; + # Change directory to the directory of the arguement + chdir($_); + # Check for the recursive option + if ($recursive) { + # Invoke subroutine to go to the lowest directory in tree + # starting at the specified directory +# &worm($_); + } + # Change directory back to the directory where FullUnitTest was invoked + chdir($cwd); +} + +# Check if there were no arguements specified +if ($args == 0){ + # Display message to user that all directories under the current will be + # tested + print("Recursively testing current directory tree.\n"); + # Invoke subroutine to go to recursively test each directory in tree + &worm($ENV{"PWD"}); +} + +# Display summary of line counts +print("\nSUMMARY STATISTICS\n"); +print("Files"); +print("$cFileCount"); +$totalFiles = $cFileCount; +print("\nTotal\t$totalFiles\n\n"); + +close(COVFILE); + +# Exit +exit(0); + + +################################################################################ +# +# SUBROUTINE: worm +# +# Description: This subroutine will perform the necessary unit tests be +# calling makeTestDrivers and executeTestDrivers subroutines +# and then check each subdirectory below the base directory +# recursively. +# +# Parameter(s): base directory to counting slocs +# +################################################################################ + +sub worm { + # Assign local variable to input parameter + local($base_dir) = @_; + local(@files, $i); + + # Create array of entries found in directory + @files = <*>; + + # Loop through the file list looking for another directory that is not + # labelled CVS and recursively invoke subroutine worm + $i = 0; + while ($files[$i]) { + # Check for directory and directory not labelled CVS + if (-d $files[$i] && ($files[$i] ne "CVS") && ($files[$i] ne "temp") + && ($files[$i] ne "verified") && ($files[$i] ne ".libs")) { + # Change current directory to directory found + chdir($files[$i]); + # Invoke subroutine worm again + &worm("$base_dir/$files[$i]"); + # Change current directory back to parent + chdir(".."); + } + # Increment file list index + $i++; + } + + # Count the number of files and test coverage in this directory + &getTestCoverage($base_dir); +} + +################################################################################ +# +# SUBROUTINE: getSlocNumber +# +# Description: This subroutine will parse the output file for the sloc +# count. +# +# Parameter(s): base directory where make and test drivers are located +# +################################################################################ + +sub getFileCoverage{ + local($base_dir) = @_; + local($retVal) = 0; + + $fname = 0; + + # Open the output file for reading if it exists + if ( -e "$base_dir/coverage" ) { + open(OUTFILE, "< $base_dir/coverage"); + while($retVal = ) { + @result = split(/ /,$retVal); + + if( $result[6] !~ /file/) { + if( $result[0] !~ /Creat/) { + print COVFILE ("$result[0]\t$result[2]\t$result[6]\t$result[7]"); + } + } + else { + print COVFILE ("$result[0]\t$result[2]\t$result[6]\t$result[7]"); + } + } + + $retVal = s/\D//; + close(OUTFILE); + } + + return($result[0]); +} + +################################################################################ +# +# SUBROUTINE: getTestCoverage +# +# Description: This subroutine will +# +# Parameter(s): base directory where make and test drivers are located +# +################################################################################ + +sub getTestCoverage{ + local($base_dir) = @_; + local($pwd); + + my($cfiles); + + $cfiles = 0; + + # Set variable to pwd to current test directory + # Display total for this directory + print("\n$base_dir\n"); + + $pwd = cwd; + + # Create a list of all elements in base directory + @files = <*>; + + # Loop through all the items in the files array + $initialTest = 0; + $j = 0; + while ( $files[$j]) { + # Check that the item is not a directory + if ( ! (-d $files[$j]) ) { + + if ( ( $files[$j] =~ m@\.c$@ ) ) { + + $objfile = $files[$j]; + $objfile =~ s/\.c$/\.o/; + $objfile = `find $base_dir/.libs -name "*$objfile"`; + chop $objfile; + + if (length($objfile) > 0) { + # Increment total number of c files + $cfiles++; + + # Call C source sloc count + system("gcov -f -o $objfile $base_dir/$files[$j] > $base_dir/coverage"); + if ( $? == 0 ) { + getFileCoverage($base_dir); + } + if ( -e "$base_dir/coverage" ) { + system("rm $base_dir/coverage"); + } + } + } + } + $j++; + } + $cFileCount += $cfiles; +} + + Index: /branches/rel-1-1/psLib/src/astro/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/astro/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/astro/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/astro/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/Makefile.am (revision 12167) @@ -0,0 +1,22 @@ +#Makefile for astronomy functions of psLib +# +AM_CFLAGS=$(CFLAGS) -DPS_CONFIG_FILE_DEFAULT=\"$(sysconfdir)/pslib/pslib.config\" + +noinst_LTLIBRARIES = libpslibastro.la + +libpslibastro_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) +libpslibastro_la_SOURCES = \ + psTime.c \ + psCoord.c \ + psSphereOps.c \ + psEarthOrientation.c + +EXTRA_DIST = astro.i + +pkginclude_HEADERS = \ + psTime.h \ + psCoord.h \ + psSphereOps.h \ + psEarthOrientation.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/astro/astro.i =================================================================== --- /branches/rel-1-1/psLib/src/astro/astro.i (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/astro.i (revision 12167) @@ -0,0 +1,3 @@ +/* astro headers */ +%include "psCoord.h" +%include "psTime.h" Index: /branches/rel-1-1/psLib/src/astro/parse_gcov-out.c =================================================================== --- /branches/rel-1-1/psLib/src/astro/parse_gcov-out.c (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/parse_gcov-out.c (revision 12167) @@ -0,0 +1,114 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#define MAXSTR 10000 + +static char outStr[MAXSTR]; +static float average; +static int sum; + +void parseFile(FILE *in, const char *filename); + +int main(void) +{ + + FILE *output = NULL; + FILE *input = NULL; + average = 0.0; + sum = 0; + int N = 0; + + input = fopen("sph_gcov.out", "r"); + parseFile(input, "psSphereOps.c"); + fclose(input); + N++; + + input = fopen("eoc_gcov.out", "r"); + parseFile(input, "psEarthOrientation.c"); + fclose(input); + N++; + + input = fopen("time_gcov.out", "r"); + parseFile(input, "psTime.c"); + fclose(input); + N++; + + input = fopen("crd_gcov.out", "r"); + parseFile(input, "psCoord.c"); + fclose(input); + N++; + + average = average / sum; + + output = fopen("Coverage-Report.txt", "w"); + fprintf(output, "\nTOTAL COVERAGE IN THE ../src/astro/ DIRECTORY\n"); + fprintf(output, "\n%s", outStr); + fprintf(output, " -------------------------------" + "-------------------------------------\n"); + fprintf(output, " ---> Total = Lines executed:"); + fprintf(output, "%3.2f%% of %d\n\n", average, sum); + fclose(output); + return 0; +} + +void parseINT(const char *nums, float percent) +{ + sum += atoi(nums); + average += (float)((int)(percent * atoi(nums))); +} + +float parseDBL(const char *nums) +{ + char temp[7]; + int i = 0; + int j = 9; + float out = 0.0; + while (nums[j] != '%') { + temp[i] = nums[j]; + i++; + j++; + } + // average += (float)atof(temp); + out = (float)atof(temp); + return out; +} + +void parseFile(FILE *in, const char *filename) +{ + char currentStr[100]; + char searchStr[100]; + char out[250]; + sprintf(out, " >><< %-25s =", filename); + sprintf(searchStr, "'%s'", filename); + // printf("\n searchStr = %s\n", searchStr); + strcat(outStr, out); + int i; + float numLines = 0.0; + while ( fscanf(in, "%s", currentStr) != EOF) { + if ( strncmp(currentStr, searchStr, 99) == 0 ) { + for (i = 0; i < 4; i++) { + if (i == 1) { + fscanf(in, "%s", out); + numLines = parseDBL(out); + sprintf(currentStr, "%-16s", out); + } else if ( i == 3) { + fscanf(in, "%s", out); + parseINT(out, numLines); + sprintf(currentStr, "%s", out); + } else { + fscanf(in, "%s", currentStr); + } + strcat(outStr, " "); + strcat(outStr, currentStr); + } + continue; + } + } + strcat(outStr, "\n\n"); +} + Index: /branches/rel-1-1/psLib/src/astro/profile_tap =================================================================== --- /branches/rel-1-1/psLib/src/astro/profile_tap (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/profile_tap (revision 12167) @@ -0,0 +1,9 @@ + +gcov -f --object-file ./.libs/libpslibastro_la-psSphereOps.o psSphereOps.c > sph_gcov.out +gcov -f --object-file ./.libs/libpslibastro_la-psEarthOrientation.o psEarthOrientation.c > eoc_gcov.out +gcov -f --object-file ./.libs/libpslibastro_la-psTime.o psTime.c > time_gcov.out +gcov -f --object-file ./.libs/libpslibastro_la-psCoord.o psCoord.c > crd_gcov.out +gcc parse_gcov-out.c -o parse_gcov +./parse_gcov +rm *.out +more Coverage-Report.txt Index: /branches/rel-1-1/psLib/src/astro/psCoord.c =================================================================== --- /branches/rel-1-1/psLib/src/astro/psCoord.c (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psCoord.c (revision 12167) @@ -0,0 +1,1279 @@ +/** @file psCoord.c +* +* @brief Contains basic coordinate transformation definitions and operations +* +* This file defines the basic types for astronomical coordinate +* transformation +* +* @ingroup CoordinateTransform +* +* @author GLG, MHPCC +* +* @version $Revision: 1.134 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-07 23:52:53 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +/******************************************************************************/ +/* INCLUDE FILES */ +/******************************************************************************/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psType.h" +#include "psCoord.h" +#include "psMemory.h" +#include "psTime.h" +#include "psAssert.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psAbort.h" + +#include "psMatrix.h" +#include "psMinimizePolyFit.h" + +# define ELIXIR_CODE 1 + +static void planeFree(psPlane *p) +{ + // There are non dynamic allocated items +} + +static void sphereFree(psSphere* s) +{ + // There are non dynamic allocated items +} + +static void cubeFree(psCube* c) +{ + // There are non dynamic allocated items +} + +static void planeTransformFree(psPlaneTransform *pt) +{ + psFree(pt->x); + psFree(pt->y); +} + +/***************************************************************************** +p_psPlaneTransformLinearInvert(transform): : this is a private function which +simply inverts the supplied psPlaneTransform transform. It assumes that +"transform" is linear. + +XXX: This code no longer makes sense. The merge must be reviewed. + +XXX: below is the code using the standard matrix representation. note that +this inversion requires x->nX == 1, y->nY == 1 and x->nY <= 1, y->nX <= 1 + *****************************************************************************/ +psPlaneTransform *p_psPlaneTransformLinearInvert(psPlaneTransform *transform) +{ + PS_ASSERT_PTR_NON_NULL(transform, NULL); + PS_ASSERT_PTR_NON_NULL(transform->x, NULL); + PS_ASSERT_PTR_NON_NULL(transform->y, NULL); + if ((transform->x->nX < 1) || + (transform->x->nY < 1) || + (transform->y->nX < 1) || + (transform->y->nY < 1)) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: input transform is not invertible."); + return(NULL); + } + + psPlaneTransform *out = psPlaneTransformAlloc(1, 1); + + if (0) { + // XXX: Get rid of this code. + psF64 A = transform->x->coeff[1][0]; + psF64 B = transform->x->coeff[0][1]; + psF64 C = transform->y->coeff[1][0]; + psF64 D = transform->y->coeff[0][1]; + psF64 E = transform->x->coeff[0][0]; + psF64 F = transform->y->coeff[0][0]; + psF64 invDet = 1.0 / (A * D - B * C); + + out->x->coeff[1][0] = invDet * D; + out->x->coeff[0][1] = invDet * -B; + out->y->coeff[1][0] = invDet * -C; + out->y->coeff[0][1] = invDet * A; + + // + // This comes from substituting the (x_2 = x_1 - e) and (y_2 = y_1 - f) equations: + // + out->x->coeff[0][0] = invDet * (B * F - D * E); + out->y->coeff[0][0] = invDet * (E * C - A * F); + + } + + psF64 r12 = 0.0; + if (transform->x->nY == 1) { + r12 = transform->x->coeff[0][1]; + } + psF64 r21 = 0.0; + if (transform->y->nX == 1) { + r21 = transform->y->coeff[1][0]; + } + psF64 r11 = transform->x->coeff[1][0]; + psF64 r22 = transform->y->coeff[0][1]; + psF64 xo = transform->x->coeff[0][0]; + psF64 yo = transform->y->coeff[0][0]; + + psF64 invDet = 1.0 / (r11 * r22 - r12 * r21); + + // apply the results back to the polynomials + out->x->coeff[0][0] = -invDet * (r22 * xo - r12 * yo); + out->y->coeff[0][0] = -invDet * (r11 * yo - r21 * xo); + out->x->coeff[1][0] = +invDet * r22; + out->y->coeff[0][1] = +invDet * r11; + if (transform->x->nY == 1) { + out->x->coeff[0][1] = -invDet * r12; + } + if (transform->y->nX == 1) { + out->y->coeff[1][0] = -invDet * r21; + } + return(out); +} + +/***************************************************************************** +p_psIsProjectionLinear(): this is a private function which simply determines +if the supplied psPlaneTransform transform is linear: if any of the +cooefficients of order 2 are higher are non-zero, then it is not linear. + +Returns: + true: if linear + false: otherwise + +Why isn't this called p_psIsPlaneTransformLinear()? + *****************************************************************************/ +bool p_psIsProjectionLinear(psPlaneTransform *transform) +{ + PS_ASSERT_PTR_NON_NULL(transform, false); + PS_ASSERT_PTR_NON_NULL(transform->x, false); + PS_ASSERT_PTR_NON_NULL(transform->y, false); + + for (psS32 i=0;i<(1 + transform->x->nX);i++) { + for (psS32 j=0;j<(1 + transform->x->nY);j++) { + if (transform->x->coeff[i][j] != 0.0) { + if (!(((i == 0) && (j == 0)) || + ((i == 0) && (j == 1)) || + ((i == 1) && (j == 0)))) { + return(false); + } + } + } + } + + for (psS32 i=0;i<(1 + transform->y->nX);i++) { + for (psS32 j=0;j<(1 + transform->y->nY);j++) { + if (transform->y->coeff[i][j] != 0.0) { + if (!(((i == 0) && (j == 0)) || + ((i == 0) && (j == 1)) || + ((i == 1) && (j == 0)))) { + return(false); + } + } + } + } + + return(true); +} + +psPlane* psPlaneAlloc(void) +{ + psPlane *p = psAlloc(sizeof(psPlane)); + psMemSetDeallocator(p, (psFreeFunc) planeFree); + + p->x = NAN; + p->y = NAN; + p->xErr = NAN; + p->yErr = NAN; + + return(p); +} + + +psSphere* psSphereAlloc(void) +{ + psSphere *s = psAlloc(sizeof(psSphere)); + psMemSetDeallocator(s, (psFreeFunc) sphereFree); + + return(s); +} + +psCube* psCubeAlloc(void) +{ + psCube *c = psAlloc(sizeof(psCube)); + + psMemSetDeallocator(c, (psFreeFunc) cubeFree); + return(c); +} + +psPlaneTransform* psPlaneTransformAlloc(int order1, int order2) +{ + PS_ASSERT_INT_NONNEGATIVE(order1, NULL); + PS_ASSERT_INT_NONNEGATIVE(order2, NULL); + + psPlaneTransform *pt = psAlloc(sizeof(psPlaneTransform)); + pt->x = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, order1, order2); + pt->y = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, order1, order2); + + psMemSetDeallocator(pt, (psFreeFunc) planeTransformFree); + return(pt); +} + + +bool psMemCheckPlane(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)planeFree ); +} + +bool psMemCheckSphere(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)sphereFree ); +} + +bool psMemCheckCube(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)cubeFree ); +} + +bool psMemCheckPlaneTransform(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)planeTransformFree ); +} + +psPlane* psPlaneTransformApply( + psPlane* out, + const psPlaneTransform* transform, + const psPlane* coords) +{ + PS_ASSERT_PTR_NON_NULL(transform, NULL); + PS_ASSERT_PTR_NON_NULL(transform->x, NULL); + PS_ASSERT_PTR_NON_NULL(transform->y, NULL); + PS_ASSERT_PTR_NON_NULL(coords, NULL); + + if (out == NULL) { + out = psPlaneAlloc(); + } + + out->x = psPolynomial2DEval(transform->x, coords->x, coords->y); + out->y = psPolynomial2DEval(transform->y, coords->x, coords->y); + + return (out); +} + +static void planeDistortFree(psPlaneDistort *pt) +{ + psFree(pt->x); + psFree(pt->y); +} + +psPlaneDistort* psPlaneDistortAlloc(int order1, int order2, int order3, int order4) +{ + PS_ASSERT_INT_NONNEGATIVE(order1, NULL); + PS_ASSERT_INT_NONNEGATIVE(order2, NULL); + PS_ASSERT_INT_NONNEGATIVE(order3, NULL); + PS_ASSERT_INT_NONNEGATIVE(order4, NULL); + + psPlaneDistort *pt = psAlloc(sizeof(psPlaneDistort)); + pt->x = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, order1, order2, order3, order4); + pt->y = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, order1, order2, order3, order4); + + psMemSetDeallocator(pt, (psFreeFunc) planeDistortFree); + return(pt); +} + +bool psMemCheckPlaneDistort(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)planeDistortFree ); +} + + + +/****************************************************************************** +This transformation takes into account parameters beyond an objects spatial +coordinates: term3 and term4 (magnitude and color). + *****************************************************************************/ +psPlane* psPlaneDistortApply( + psPlane* out, + const psPlaneDistort* distort, + const psPlane* coords, + float mag, + float color) +{ + PS_ASSERT_PTR_NON_NULL(distort, NULL); + PS_ASSERT_PTR_NON_NULL(distort->x, NULL); + PS_ASSERT_PTR_NON_NULL(distort->y, NULL); + PS_ASSERT_PTR_NON_NULL(coords, NULL); + + if (out == NULL) { + out = psPlaneAlloc(); + } + out->x = psPolynomial4DEval(distort->x, coords->x, coords->y, mag, color); + out->y = psPolynomial4DEval(distort->y, coords->x, coords->y, mag, color); + return (out); +} + + +void projectionFree(psProjection *p) +{ + // There are no dynamically allocated items +} + +psProjection* psProjectionAlloc( + double R, + double D, + double Xs, + double Ys, + psProjectionType type) +{ + psProjection *p = psAlloc(sizeof(psProjection)); + p->D = D; + p->R = R; + p->Xs = Xs; + p->Ys = Ys; + p->type = type; + + psMemSetDeallocator(p, (psFreeFunc) projectionFree); + return(p); +} + +bool psMemCheckProjection(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)projectionFree ); +} + +typedef enum { + PS_PROJ_NONE, + PS_PROJ_CARTESIAN, + PS_PROJ_ZENITHAL, + PS_PROJ_PSEUDOCYL, +}psProjectionClass; + +psPlane* psProject( + psPlane *outPlane, + const psSphere* coord, + const psProjection* projection) +{ + PS_ASSERT_PTR_NON_NULL(coord, NULL); + PS_ASSERT_PTR_NON_NULL(projection, NULL); + + psF64 phi = 0; + psF64 theta = 0; + psF64 sinTheta = 0; + psF64 cosPhiCT = 0; + psF64 sinPhiCT = 0; + psF64 sinDp, cosDp, sinAlpha, cosAlpha, sinDelta, cosDelta, zeta; + + psProjectionClass class = PS_PROJ_NONE; + switch (projection->type) { + case PS_PROJ_LIN: + case PS_PROJ_PLY: + case PS_PROJ_WRP: + class = PS_PROJ_CARTESIAN; + break; + case PS_PROJ_TAN: + case PS_PROJ_DIS: + case PS_PROJ_SIN: + case PS_PROJ_STG: + case PS_PROJ_ZEA: + case PS_PROJ_ZPL: + class = PS_PROJ_ZENITHAL; + break; + case PS_PROJ_AIT: + case PS_PROJ_PAR: + case PS_PROJ_GLS: + case PS_PROJ_MER: + case PS_PROJ_CAR: + class = PS_PROJ_PSEUDOCYL; + break; + + default: + psAbort("invalid projection"); + break; + } + + // Allocate return value + psPlane* out = NULL; + if (outPlane == NULL) { + out = psPlaneAlloc(); + } else { + out = outPlane; + } + + switch (class) { + case PS_PROJ_CARTESIAN: + out->x = (coord->r - projection->R); + out->y = (coord->d - projection->D); + break; + + case PS_PROJ_ZENITHAL: + sinDp = sin(projection->D); + cosDp = cos(projection->D); + sinAlpha = sin(coord->r-projection->R); + cosAlpha = cos(coord->r-projection->R); + sinDelta = sin(coord->d); + cosDelta = cos(coord->d); + + # if ELIXIR_CODE + + sinTheta = cosDelta*cosAlpha*cosDp + sinDelta*sinDp; + sinPhiCT = cosDelta*sinAlpha; + cosPhiCT = cosDelta*cosAlpha*sinDp - sinDelta*cosDp; + # else + + sinTheta = cosDelta*cosAlpha*cosDp + sinDelta*sinDp; + sinPhiCT = -cosDelta*sinAlpha; + cosPhiCT = -cosDelta*cosAlpha*sinDp + sinDelta*cosDp; + # endif + // Perform the specified projection + switch (projection->type) + { + case PS_PROJ_TAN: + case PS_PROJ_DIS: + // Gnomonic projection + out->x = +sinPhiCT / sinTheta; + out->y = -cosPhiCT / sinTheta; + break; + case PS_PROJ_SIN: + // Othrographic projection + out->x = +sinPhiCT; + out->y = -cosPhiCT; + break; + case PS_PROJ_STG: + // Othrographic projection + out->x = +2*sinPhiCT / (1 + sinTheta); + out->y = -2*cosPhiCT / (1 + sinTheta); + break; + case PS_PROJ_ZEA: + case PS_PROJ_ZPL: + // Zenithal Equal-Area + zeta = M_SQRT2 / sqrt (1 + sinTheta); + out->x = +zeta * sinPhiCT; + out->y = -zeta * cosPhiCT; + break; + default: + psAbort("invalid projection"); + break; + } + break; + + case PS_PROJ_PSEUDOCYL: + phi = coord->r - projection->R; + theta = coord->d - projection->D; + switch (projection->type) + { + case PS_PROJ_AIT: + // Hammer-Aitoff projection + zeta = 1.0/sqrt(0.5*(1.0+cos(theta)*cos(phi/2.0))); + out->x = 2.0*zeta*cos(theta)*sin(phi/2.0); + out->y = zeta*sin(theta); + break; + case PS_PROJ_GLS: + // projection name? + out->x = phi * cos(theta); + out->x = theta; + break; + case PS_PROJ_PAR: + // Parabolic projection + out->x = phi*(2.0*cos(2.0*theta/3.0) - 1.0); + out->y = M_PI*sin(theta/3.0); + break; + case PS_PROJ_CAR: + case PS_PROJ_MER: + psAbort("projection not yet implemented"); + break; + default: + psAbort("invalid projection"); + break; + } + break; + + default: + psAbort("invalid projection"); + break; + } + + // Apply plate scales + out->x /= projection->Xs; + out->y /= projection->Ys; + + // Return output + return out; +} + +psSphere* psDeproject( + psSphere *outSphere, + const psPlane* coord, + const psProjection* projection) +{ + PS_ASSERT_PTR_NON_NULL(coord, NULL); + PS_ASSERT_PTR_NON_NULL(projection, NULL); + + psF64 rho = 0.0; + psF64 rho2 = 0.0; + psF64 sinTheta = 0.0; + psF64 cosTheta = 0.0; + psF64 sinPhi = 0.0; + psF64 cosPhi = 0.0; + + psF64 theta = 0.0; + psF64 phi = 0.0; + psF64 x = 0, y = 0, R = 0; + + psProjectionClass class = PS_PROJ_NONE; + switch (projection->type) { + case PS_PROJ_LIN: + case PS_PROJ_PLY: + case PS_PROJ_WRP: + class = PS_PROJ_CARTESIAN; + break; + case PS_PROJ_TAN: + case PS_PROJ_DIS: + case PS_PROJ_SIN: + case PS_PROJ_STG: + case PS_PROJ_ZEA: + case PS_PROJ_ZPL: + class = PS_PROJ_ZENITHAL; + break; + case PS_PROJ_AIT: + case PS_PROJ_PAR: + case PS_PROJ_GLS: + case PS_PROJ_CAR: + case PS_PROJ_MER: + class = PS_PROJ_PSEUDOCYL; + break; + + default: + psAbort("invalid projection"); + break; + } + + // Allocate return sphere structure + psSphere *out = NULL; + if (outSphere == NULL) { + out = psSphereAlloc(); + } else { + if ( !psMemCheckType(PS_DATA_SPHERE, outSphere) ) { + psError(PS_ERR_UNKNOWN, true, "outSphere must be of type *psSphere.\n"); + return(NULL); + } + out = outSphere; + } + + // Perform inverse projection + switch (class) { + case PS_PROJ_CARTESIAN: + out->r = coord->x*projection->Xs + projection->R; + out->d = coord->y*projection->Ys + projection->D; + break; + + case PS_PROJ_ZENITHAL: + // Remove plate scales + x = coord->x*projection->Xs; + y = coord->y*projection->Ys; + R = sqrt(x*x + y*y); + sinPhi = (R == 0) ? 0.0 : +x / R; + cosPhi = (R == 0) ? 1.0 : -y / R; + + switch (projection->type) + { + case PS_PROJ_TAN: + case PS_PROJ_DIS: + // Gnonomic deprojection + rho = sqrt (1 + R*R); + sinTheta = 1 / rho; + cosTheta = R / rho; + break; + case PS_PROJ_SIN: + // Orhtographic deprojection + sinTheta = sqrt (1 - R*R); + cosTheta = R; + break; + case PS_PROJ_STG: + psAbort("STG not defined"); + break; + case PS_PROJ_ZEA: + case PS_PROJ_ZPL: + if (R > 2) + return NULL; + sinTheta = 1 - 0.5*PS_SQR(R); + cosTheta = sqrt (1 - PS_SQR(sinTheta)); + break; + default: + psAbort("invalid projection"); + break; + } + + psF64 sinDp = sin(projection->D); + psF64 cosDp = cos(projection->D); + + // Convert from projection spherical coordinates + // psLib versions: + # if ELIXIR_CODE + // XXX the elixir version : does the ADD have a sign error? + psF64 delta = asin(sinTheta*sinDp - cosTheta*cosPhi*cosDp); + psF64 sinAlpha = +cosTheta*sinPhi; + psF64 cosAlpha = +cosTheta*cosPhi*sinDp + sinTheta*cosDp; + # else + + psF64 delta = asin(sinTheta*sinDp + cosTheta*cosPhi*cosDp); + psF64 sinAlpha = -cosTheta*sinPhi; + psF64 cosAlpha = -cosTheta*cosPhi*sinDp + sinTheta*cosDp; + # endif + + out->d = delta; + out->r = atan2(sinAlpha, cosAlpha) + projection->R; + break; + + case PS_PROJ_PSEUDOCYL: + switch (projection->type) + { + case PS_PROJ_AIT: + // Hammer-Aitoff deprojection + // XXX EAM : need range check on z^2 : must be > 0 + // XXX EAM : old code, ADD, and elixir code are discrepant re x/4, y/2 + rho2 = 1.0 - PS_SQR(0.25*x) - PS_SQR(0.5*y); + if (rho2 < 0) + return (NULL); + rho = sqrt(rho2); + phi = 2.0*atan2(0.5*x*rho, 2.0*rho2 - 1.0); + theta = asin(y*rho); + break; + case PS_PROJ_PAR: + // Parabolic deprojection + rho = y/M_PI; + phi = x/(1.0 - 4.0*rho*rho); + theta = 3.0*asin(rho); + break; + case PS_PROJ_GLS: + phi = x/cos(y); + theta = y; + break; + default: + psAbort("invalid projection"); + break; + } + out->r = phi + projection->R; + out->d = theta + projection->D; + break; + default: + psAbort("invalid projection"); + break; + } + + // Return sphere coordinate + return out; +} + +/***************************************************************************** +multiplyDPoly2D(trans1, trans2): Takes two 2-D polynomials as input and +multiplies them. Basically, for each non-zero coeff in the trans1 coeff[][] +array, you must multiply by all non-zero coeffs in trans2. + *****************************************************************************/ +static psPolynomial2D *multiplyDPoly2D( + psPolynomial2D *trans1, + psPolynomial2D *trans2) +{ + psTrace("psLib.astro", 4, "---- %s() begin ----\n", __func__); + psTrace("psLib.astro", 5, "multiplyDPoly2D(%d %d: %d %d)\n", trans1->nX, trans1->nY, trans2->nX, trans2->nY); + psS32 orderX = trans1->nX + trans2->nX; + psS32 orderY = trans1->nY + trans2->nY; + psTrace("psLib.astro", 5, "out poly (nX, nY) is (%d, %d)\n", orderX, orderY); + + psPolynomial2D *out = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, orderX, orderY); + psTrace("psLib.astro", 5, "Creating poly (%d, %d)\n", orderX, orderY); + + for (psS32 t1x = 0 ; t1x < (1 + trans1->nX) ; t1x++) { + for (psS32 t1y = 0 ; t1y < (1 + trans1->nY) ; t1y++) { + if (0.0 != trans1->coeff[t1x][t1y]) { + for (psS32 t2x = 0 ; t2x < (1 + trans2->nX) ; t2x++) { + for (psS32 t2y = 0 ; t2y < (1 + trans2->nY) ; t2y++) { + out->coeff[t1x+t2x][t1y+t2y]+= (trans1->coeff[t1x][t1y] * trans2->coeff[t2x][t2y]); + } + } + } + } + } + psTrace("psLib.astro", 4, "---- %s() end ----\n", __func__); + return(out); +} + +/***************************************************************************** +psPlaneTransformCombine(out, trans1, trans2) + *****************************************************************************/ +psPlaneTransform *psPlaneTransformCombine( + psPlaneTransform *out, + const psPlaneTransform *trans1, + const psPlaneTransform *trans2, + psRegion region, + int nSamples) +{ + psTrace("psLib.astro", 3, "---- %s() begin ----\n", __func__); + psTrace("psLib.astro", 3, "tracelevel(%s) is %d\n", __func__, psTraceGetLevel("psLib.astro")); + + PS_ASSERT_PTR_NON_NULL(trans1, NULL); + PS_ASSERT_PTR_NON_NULL(trans2, NULL); + psTrace("psLib.astro", 5, "trans1->x is (%d, %d) order.\n", trans1->x->nX, trans1->x->nY); + psTrace("psLib.astro", 5, "trans1->y is (%d, %d) order.\n", trans1->y->nX, trans1->y->nY); + psTrace("psLib.astro", 5, "trans2->x is (%d, %d) order.\n", trans2->x->nX, trans2->x->nY); + psTrace("psLib.astro", 5, "trans2->y is (%d, %d) order.\n", trans2->y->nX, trans2->y->nY); + if (psTraceGetLevel("psLib.astro") >= 6) { + PS_POLY_PRINT_2D(trans1->x); + PS_POLY_PRINT_2D(trans1->y); + PS_POLY_PRINT_2D(trans2->x); + PS_POLY_PRINT_2D(trans2->y); + } + + // + // Determine the size of the new psPlaneTransform. + // + psS32 orderXnX = (trans2->x->nX * trans1->x->nX) + (trans2->x->nY * trans1->y->nX); + psS32 orderXnY = (trans2->x->nX * trans1->x->nY) + (trans2->x->nY * trans1->y->nY); + psS32 orderYnX = (trans2->y->nX * trans1->x->nX) + (trans2->y->nY * trans1->y->nX); + psS32 orderYnY = (trans2->y->nX * trans1->x->nY) + (trans2->y->nY * trans1->y->nY); + psS32 orderX = PS_MAX(orderXnX, orderYnX); + psS32 orderY = PS_MAX(orderXnY, orderYnY); + psTrace("psLib.astro", 5, "The new (orderX, orderY) is (%d, %d)\n", orderX, orderY); + + // + // Allocate the new psPlaneTransform, if necessary. + // + + psPlaneTransform *myPT = NULL; + if (out == NULL) { + myPT = psPlaneTransformAlloc(orderX, orderY); + } else { + if ((out->x->nX == orderX) && + (out->x->nY == orderY) && + (out->y->nX == orderX) && + (out->y->nY == orderY)) { + myPT = out; + // + // Initialize the new psPlaneTransform, if necessary. + // + for (psS32 i = 0 ; i < orderX+1 ; i++) { + for (psS32 j = 0 ; j < orderY+1 ; j++) { + myPT->x->coeff[i][j] = 0.0; + myPT->x->mask[i][j] = 0; + myPT->y->coeff[i][j] = 0.0; + myPT->y->mask[i][j] = 0; + } + } + } else { + psFree(out); + myPT = psPlaneTransformAlloc(orderX, orderY); + } + } + psTrace("psLib.astro", 5, "New polynomial ranks are (%d %d %d %d)\n", myPT->x->nX, myPT->x->nY, myPT->y->nX, myPT->y->nY); + + // + // For each term (a * x^i * y^j) in trans2, we substitute the appropriate + // equation from trans1, and raise it to the appropriate power. This is + // done via the multiplyDPoly2D(). The result is a polynomial (currPoly) + // and its coefficients are added into the myPT coeff matrix. + // + // trans1XPolys[i]: contains a polynomial corresponding to trans1->x raised to the i-th power. + // + + psS32 order = PS_MAX(PS_MAX(PS_MAX(trans2->x->nX, trans2->x->nY), trans2->y->nX), trans2->y->nY); + psPolynomial2D **trans1XPolys = (psPolynomial2D **) psAlloc((order + 1) * sizeof(psPolynomial2D *)); + psPolynomial2D **trans1YPolys = (psPolynomial2D **) psAlloc((order + 1) * sizeof(psPolynomial2D *)); + + // + // Raise the trans1 polynomials to whatever power is need in the trans2 polynomials. + // + trans1XPolys[0] = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 0, 0); + trans1XPolys[0]->coeff[0][0] = 1.0; + trans1YPolys[0] = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 0, 0); + trans1YPolys[0]->coeff[0][0] = 1.0; + + for (psS32 c = 1 ; c < (order + 1) ; c++) { + trans1XPolys[c] = multiplyDPoly2D(trans1XPolys[c-1], trans1->x); + trans1YPolys[c] = multiplyDPoly2D(trans1YPolys[c-1], trans1->y); + } + + psTrace("psLib.astro", 5, "Determine the new x-polynomial\n"); + for (psS32 t2x = 0 ; t2x < (trans2->x->nX + 1) ; t2x++) { + for (psS32 t2y = 0 ; t2y < (trans2->x->nY + 1) ; t2y++) { + psTrace("psLib.astro", 6, "X: -------------------- (t2x, t2y) (%d, %d) --------------------\n", t2x, t2y); + if (trans2->x->mask[t2x][t2y] == 0) { + psTrace("psLib.astro", 6, "In this iteration, we raise trans1->x to the %d power and trans1->y to the %d-power.\n", t2x, t2y); + psPolynomial2D *newPoly = multiplyDPoly2D(trans1XPolys[t2x], trans1YPolys[t2y]); + + if (psTraceGetLevel("psLib.astro") >= 6) { + PS_POLY_PRINT_2D(newPoly); + } + + // Set the appropriate coeffs in myPT->x + for (psS32 i = 0 ; i < (1 + newPoly->nX) ; i++) { + for (psS32 j = 0 ; j < (1 + newPoly->nY) ; j++) { + myPT->x->coeff[i][j]+= newPoly->coeff[i][j] * trans2->x->coeff[t2x][t2y]; + } + } + + if (psTraceGetLevel("psLib.astro") >= 6) { + PS_POLY_PRINT_2D(myPT->x); + } + psFree(newPoly); + } + } + } + if (psTraceGetLevel("psLib.astro") >= 6) { + psTrace("psLib.astro", 6, "The final x-polynomial\n"); + PS_POLY_PRINT_2D(myPT->x); + } + + // + // Determine the new y-polynomial + // + psTrace("psLib.astro", 5, "Determine the new y-polynomial\n"); + for (psS32 t2x = 0 ; t2x < (trans2->y->nX + 1) ; t2x++) { + for (psS32 t2y = 0 ; t2y < (trans2->y->nY + 1) ; t2y++) { + psTrace("psLib.astro", 5, "Y: -------------------- (t2x, t2y) (%d, %d) --------------------\n", t2x, t2y); + if (trans2->y->mask[t2x][t2y] == 0) { + psTrace("psLib.astro", 5, "In this iteration, we raise trans1->x to the %d power and trans1->y to the %d-power.\n", t2x, t2y); + psPolynomial2D *newPoly = multiplyDPoly2D(trans1XPolys[t2x], trans1YPolys[t2y]); + + if (psTraceGetLevel("psLib.astro") >= 6) { + PS_POLY_PRINT_2D(newPoly); + } + + // Set the appropriate coeffs in myPT->x + for (psS32 i = 0 ; i < (1 + newPoly->nX) ; i++) { + for (psS32 j = 0 ; j < (1 + newPoly->nY) ; j++) { + myPT->y->coeff[i][j]+= newPoly->coeff[i][j] * trans2->y->coeff[t2x][t2y]; + } + } + if (psTraceGetLevel("psLib.astro") >= 6) { + PS_POLY_PRINT_2D(myPT->x); + } + psFree(newPoly); + } + } + } + if (psTraceGetLevel("psLib.astro") >= 6) { + psTrace("psLib.astro", 6, "The final y-polynomial\n"); + PS_POLY_PRINT_2D(myPT->y); + } + + for (psS32 c = 0 ; c < (order + 1) ; c++) { + psFree(trans1XPolys[c]); + psFree(trans1YPolys[c]); + } + psFree(trans1XPolys); + psFree(trans1YPolys); + + psTrace("psLib.astro", 3, "---- %s() end ----\n", __func__); + return(myPT); +} + +/***************************************************************************** +psPlaneTransformFit(trans, source, dest, nRejIter, sigmaClip) + +XXX: This code ignores nRejIter and sigmaClip. We must call the ClipFit +routines instead. + *****************************************************************************/ +bool psPlaneTransformFit( + psPlaneTransform *trans, + const psArray *source, + const psArray *dest, + int nRejIter, + float sigmaClip) +{ + PS_ASSERT_PTR_NON_NULL(trans, NULL); + PS_ASSERT_PTR_NON_NULL(source, NULL); + PS_ASSERT_PTR_NON_NULL(dest, NULL); + + // + // Create the x and y vectors for the psVectorFitPolynomial2D() function. + // + psS32 numCoords = PS_MIN(source->n, dest->n); + psVector *xIn = psVectorAlloc(numCoords, PS_TYPE_F64); + psVector *yIn = psVectorAlloc(numCoords, PS_TYPE_F64); + psVector *xOut = psVectorAlloc(numCoords, PS_TYPE_F64); + psVector *yOut = psVectorAlloc(numCoords, PS_TYPE_F64); + for (int g = 0; g < numCoords; g++) { + xIn->data.F64[g] = ((psPlane *) source->data[g])->x; + yIn->data.F64[g] = ((psPlane *) source->data[g])->y; + xOut->data.F64[g] = ((psPlane *) dest->data[g])->x; + yOut->data.F64[g] = ((psPlane *) dest->data[g])->y; + } + + bool result = true; + result &= psVectorFitPolynomial2D(trans->x, NULL, 0, xOut, NULL, xIn, yIn); + result &= psVectorFitPolynomial2D(trans->y, NULL, 0, yOut, NULL, xIn, yIn); + psFree(xIn); + psFree(yIn); + psFree(xOut); + psFree(yOut); + + if (!result) { + psError( PS_ERR_UNKNOWN, true, "psVectorFitPolynomial2D() returned NULL: could not fit a 2-D polynomial to the data.\n"); + return(false); + } + + return(true); +} + + +/***************************************************************************** +psPlaneTransformInvert(out, in, region, nSamples) + + *****************************************************************************/ +psPlaneTransform *psPlaneTransformInvert( + psPlaneTransform *out, + const psPlaneTransform *in, + psRegion region, + int nSamples) +{ + PS_ASSERT_PTR_NON_NULL(in, NULL); + PS_ASSERT_PTR_NON_NULL(in->x, NULL); + PS_ASSERT_PTR_NON_NULL(in->y, NULL); + PS_ASSERT_INT_LARGER_THAN(nSamples, 0, NULL); + + // Reject a trivially non-invertible case. + if ((in->x->nX < 1) || (in->x->nY < 1) || (in->y->nX < 1) || (in->y->nY < 1)) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: input transform is not invertible."); + return(NULL); + } + + // Ensure that the input transformation is symmetrical. + if ((in->x->nX != in->x->nY) || (in->y->nX != in->y->nY) || (in->x->nX != in->y->nX)) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Input transformation must have same nX==nY."); + } + + // + // If the transform is linear, then invert it exactly and return. + // + if (p_psIsProjectionLinear((psPlaneTransform *) in)) { + return(p_psPlaneTransformLinearInvert((psPlaneTransform *) in)); + } + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(nSamples, 1, NULL); + + // + // Allocate a new psPlaneTransform if "out" is NULL, or has the wrong size. + // + psS32 order = in->x->nX; + psPlaneTransform *myPT = NULL; + if (out == NULL) { + myPT = psPlaneTransformAlloc(order, order); + } else { + if ((out->x->nX == order) && (out->x->nY == order) && + (out->y->nX == order) && (out->y->nX == order)) { + myPT = out; + } else { + psFree(out); + myPT = psPlaneTransformAlloc(order, order); + } + } + + // + // Initialize the grid. Since we want the inverse of the transformation, the + // inCoords are written to the outData vector, and the outCoords are written + // to the inData vector. + // + psVector *xIn = psVectorAlloc(nSamples*nSamples, PS_TYPE_F64); + psVector *yIn = psVectorAlloc(nSamples*nSamples, PS_TYPE_F64); + psVector *xOut = psVectorAlloc(nSamples*nSamples, PS_TYPE_F64); + psVector *yOut = psVectorAlloc(nSamples*nSamples, PS_TYPE_F64); + psPlane *inCoord = psPlaneAlloc(); + psPlane *outCoord = psPlaneAlloc(); + psS32 cnt = 0; + for (int yint = 0; yint < nSamples; yint++) { + inCoord->y = region.y0 + ((psF32) yint) * ((region.y1 - region.y0) / ((psF32) nSamples)); + for (int xint = 0; xint < nSamples; xint++) { + inCoord->x = region.x0 + ((psF32) xint) * ((region.x1 - region.x0) / ((psF32) nSamples)); + (void)psPlaneTransformApply(outCoord, in, inCoord); + xOut->data.F64[cnt] = inCoord->x; + yOut->data.F64[cnt] = inCoord->y; + xIn->data.F64[cnt] = outCoord->x; + yIn->data.F64[cnt] = outCoord->y; + cnt++; + } + } + + bool result = true; + result &= psVectorFitPolynomial2D(myPT->x, NULL, 0, xOut, NULL, xIn, yIn); + result &= psVectorFitPolynomial2D(myPT->y, NULL, 0, yOut, NULL, xIn, yIn); + + psFree(inCoord); + psFree(outCoord); + psFree(xIn); + psFree(yIn); + psFree(xOut); + psFree(yOut); + + if (!result) { + psError( PS_ERR_UNKNOWN, true, "psVectorFitPolynomial2D() returned NULL: could not fit a 2-D polynomial to the data.\n"); + psFree(out); + return(NULL); + } + + return(myPT); +} + + +psPlane *psPlaneTransformDeriv( + psPlane *out, + const psPlaneTransform *transformation, + const psPlane *coord +) +{ + PS_ASSERT_PTR_NON_NULL(transformation, NULL); + PS_ASSERT_POLY_NON_NULL(transformation->x, NULL); + PS_ASSERT_POLY_NON_NULL(transformation->y, NULL); + PS_ASSERT_PTR_NON_NULL(coord, NULL); + + if (out == NULL) { + out = psPlaneAlloc(); + } + + out->x = 0.0; + out->y = 0.0; + out->xErr = 0.0; + out->yErr = 0.0; + + psPolynomial2D *xPoly = transformation->x; + psPolynomial2D *yPoly = transformation->y; + + // + // Calculate the derivative with respect to x. + // + psF32 xSum = 1.0; + psF32 ySum = 1.0; + + // This loop starts at loop_x=1 since the derivative of the loop_x=0 terms are all 0.0 + for (psS32 loop_x = 1; loop_x < (1 + xPoly->nX); loop_x++) { + ySum = 1.0; + for (psS32 loop_y = 0; loop_y < (1 + xPoly->nY); loop_y++) { + // + // For each iteration of the loop, we multiply the (x, y) coefficient + // by (x^(loop_x-1) * y^loop_y) * loop_x + // + + out->x+= xPoly->coeff[loop_x][loop_y] * xSum * ySum * ((psF32) loop_x); + psTrace("psLib.astro", 6, "out->x+= (%.2f * %.2f * %.2f * %.2f)\n", xPoly->coeff[loop_x][loop_y], xSum, ySum, ((psF32) loop_x)); + ySum*= coord->y; + } + xSum*= coord->x; + } + + // + // Calculate the derivative with respect to x. + // + xSum = 1.0; + + // This loop starts at loop_y=1 since the derivative of the loop_y=0 terms are all 0.0 + for (psS32 loop_x = 0; loop_x < (1 + yPoly->nX); loop_x++) { + ySum = 1.0; + for (psS32 loop_y = 1; loop_y < (1 + yPoly->nY); loop_y++) { + // + // For each iteration of the loop, we multiply the (x, y) coefficient + // by (x^(loop_x-1) * y^loop_y) * loop_y + // by (x^(loop_x) * y^(loop_y-1)) + // + + out->y+= yPoly->coeff[loop_x][loop_y] * xSum * ySum * ((psF32) loop_y); + psTrace("psLib.astro", 6, "out->y+= (%.2f * %.2f * %.2f * %.2f)\n", yPoly->coeff[loop_x][loop_y], xSum, ySum, ((psF32) loop_y)); + ySum*= coord->y; + } + xSum*= coord->x; + } + + return(out); +} + +psPixels *psPixelsTransform( + psPixels *out, + const psPixels *input, + const psPlaneTransform *inToOut) +{ + PS_ASSERT_PTR_NON_NULL(input, NULL); + PS_ASSERT_PTR_NON_NULL(inToOut, NULL); + if (out == NULL) { + //XXX: Should the length (nalloc) be 1 and append be used everytime a pixel is added? + // out = psPixelsAlloc(input->nalloc); + out = psPixelsAlloc(0); + } + psPlane *coord = psPlaneAlloc(); + psPlane *deriv = psPlaneAlloc(); + psPlane *fxnVal = psPlaneAlloc(); + + int i = 0; + // int m = 0; + // while (input->data.x[i] != 0.0 && input->data.y[i] != 0.0) { + for ( i = 0; i < input->n; i++) { + coord->x = input->data[i].x; + coord->y = input->data[i].y; + deriv = psPlaneTransformDeriv(deriv, inToOut, coord); + fxnVal = psPlaneTransformApply(fxnVal, inToOut, coord); + if (fabs(fxnVal->x - coord->x) <= fabs(deriv->x) && + fabs(fxnVal->y - coord->y) <= fabs(deriv->y)) { + int x = (int)(ceil(fabs(deriv->x))); + int y = (int)(ceil(fabs(deriv->y))); + for (int j = -x; j <= x; j++) { + for (int k = -y; k <= y; k++) { + // out->data[m].x = fxnVal->x + x; + // out->data[m].y = fxnVal->y + y; + // m++; + out = p_psPixelsAppend(out, 1, (float)(fxnVal->x+j), + (float)(fxnVal->y+k) ); + } + } + } + } + + psFree(coord); + psFree(deriv); + psFree(fxnVal); + return out; +} + +psCube *psSphereToCube(const psSphere *sphere) +{ + if(sphere == NULL) { + psError( PS_ERR_UNKNOWN, true, "psSphere argument is NULL. Returning NULL.\n"); + return NULL; + } + + psCube *cube = NULL; + + cube = psCubeAlloc(); + cube->x = cos(sphere->d) * cos(sphere->r); + cube->y = cos(sphere->d) * sin(sphere->r); + cube->z = sin(sphere->d); + cube->xErr = cos(sphere->dErr) * cos(sphere->rErr); + cube->yErr = cos(sphere->dErr) * sin(sphere->rErr); + cube->zErr = sin(sphere->dErr); + + return(cube); +} + +psSphere *psCubeToSphere(const psCube *cube) +{ + if(cube == NULL) { + psError( PS_ERR_UNKNOWN, true, "psCube argument is NULL. Returning NULL.\n"); + return NULL; + } + + psSphere *sphere = NULL; + sphere = psSphereAlloc(); + // sphere->r = arctan(cube->x/cube->y); + // sphere->d = arctan(sqrt(cube->x*cube->x + cube->y*cube->y)/cube->z); + // sphere->rErr = arctan(cube->xErr/cube->yErr); + // sphere->dErr = arctan(sqrt(cube->xErr*cube->xErr + cube->yErr*cube->yErr)/cube->zErr); + // sphere->r = 1 / (atan(cube->x/cube->y)); + // sphere->d = 1 / (atan(sqrt(cube->x*cube->x + cube->y*cube->y)/cube->z)); + // sphere->rErr = 1 / (atan(cube->xErr/cube->yErr)); + // sphere->dErr = 1 / (atan(sqrt(cube->xErr*cube->xErr + cube->yErr*cube->yErr)/cube->zErr)); + psCube *cube2 = psCubeAlloc(); + *cube2 = *cube; + double mag = sqrt(cube->x*cube->x + cube->y*cube->y + cube->z*cube->z); + if (mag > 1.0) { + cube2->x = cube2->x/mag; + cube2->y = cube2->y/mag; + cube2->z = cube2->z/mag; + } + + sphere->r = atan2(cube2->y, cube2->x); + sphere->d = asin(cube2->z); + // sphere->d = atan2((cube->x*cube->x + cube->y*cube->y), cube->z); + sphere->rErr = atan2(cube2->yErr, cube2->xErr); + sphere->dErr = asin(cube2->zErr); + psFree(cube2); + + return(sphere); +} + +char * psProjectTypeToString (psProjectionType type, char *prefix) +{ + + char *name = NULL; + + switch (type) { + case PS_PROJ_LIN: + psStringAppend (&name, "%s-LIN", prefix); + return name; + case PS_PROJ_PLY: + psStringAppend (&name, "%s-PLY", prefix); + return name; + case PS_PROJ_WRP: + psStringAppend (&name, "%s-WRP", prefix); + return name; + case PS_PROJ_TAN: + psStringAppend (&name, "%s-TAN", prefix); + return name; + case PS_PROJ_DIS: + psStringAppend (&name, "%s-DIS", prefix); + return name; + case PS_PROJ_SIN: + psStringAppend (&name, "%s-SIN", prefix); + return name; + case PS_PROJ_STG: + psStringAppend (&name, "%s-STG", prefix); + return name; + case PS_PROJ_AIT: + psStringAppend (&name, "%s-AIT", prefix); + return name; + case PS_PROJ_PAR: + psStringAppend (&name, "%s-PAR", prefix); + return name; + case PS_PROJ_GLS: + psStringAppend (&name, "%s-GLS", prefix); + return name; + case PS_PROJ_CAR: + psStringAppend (&name, "%s-CAR", prefix); + return name; + case PS_PROJ_MER: + psStringAppend (&name, "%s-MER", prefix); + return name; + + default: + psLogMsg ("psLib.astrom", 2, "warning: unknown projection type %d\n", type); + return NULL; + } + return NULL; +} + +psProjectionType psProjectTypeFromString (char *name) +{ + + psProjectionType type = PS_PROJ_NTYPE; + if (!strcmp (&name[4], "-LIN")) + type = PS_PROJ_LIN; + if (!strcmp (&name[4], "-PLY")) + type = PS_PROJ_PLY; + if (!strcmp (&name[4], "-WRP")) + type = PS_PROJ_WRP; + if (!strcmp (&name[4], "-TAN")) + type = PS_PROJ_TAN; + if (!strcmp (&name[4], "-DIS")) + type = PS_PROJ_DIS; + if (!strcmp (&name[4], "-SIN")) + type = PS_PROJ_SIN; + if (!strcmp (&name[4], "-STG")) + type = PS_PROJ_STG; + if (!strcmp (&name[4], "-AIT")) + type = PS_PROJ_AIT; + if (!strcmp (&name[4], "-PAR")) + type = PS_PROJ_PAR; + if (!strcmp (&name[4], "-GLS")) + type = PS_PROJ_GLS; + if (!strcmp (&name[4], "-CAR")) + type = PS_PROJ_CAR; + if (!strcmp (&name[4], "-MER")) + type = PS_PROJ_MER; + return type; +} Index: /branches/rel-1-1/psLib/src/astro/psCoord.h =================================================================== --- /branches/rel-1-1/psLib/src/astro/psCoord.h (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psCoord.h (revision 12167) @@ -0,0 +1,458 @@ +/** @file psCoord.h + * + * @brief Basic coordinate transformations + * + * This file defines the basic types for astronomical coordinate + * transformation + * + * @author GLG, MHPCC + * + * @version $Revision: 1.57 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:36:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_COORD_H +#define PS_COORD_H + +/// @addtogroup Astro Astronomy +/// @{ + +#include "psType.h" +#include "psImage.h" +#include "psArray.h" +#include "psList.h" +#include "psPolynomial.h" +#include "psPixels.h" +#include "psRegion.h" +//#include "psTime.h" + +/** Euclidiean Coordinate System. + * + * Both detector and sky positions will be used extensively in the IPP. One + * coordinate system to be used is linear coordinates which conform to + * Euclidean geometry. + * + */ +typedef struct +{ + double x; ///< x position + double y; ///< y position + double xErr; ///< Error in x position + double yErr; ///< Error in y position +} +psPlane; + +/** Angular Coordinate System + * + * Both detector and sky positions will be used extensively in the IPP. One + * coordinate system to be used is angular coordinates for which additional + * care must often be taken in comparison to a euclidiean coordinate system. + * + */ +typedef struct +{ + double r; ///< RA + double d; ///< Dec + double rErr; ///< Error in RA + double dErr; ///< Error in Dec +} +psSphere; + +/** 3-Dimensional Euclidean Coordinate System + * + * Both detector and sky positions will be used extensively in the IPP. One + * coordinate system to be used is cubic coordinates for which additional + * care must often be taken in comparison to an angular coordinate system. + * + */ +typedef struct +{ + double x; ///< cos (DEC) cos (RA) + double y; ///< cos (DEC) sin (RA) + double z; ///< sin (DEC) + double xErr; ///< Error in x + double yErr; ///< Error in y + double zErr; ///< Error in z +} +psCube; + +/** 2D Polynomial Transform + * + * A transform between coordinate systems that consists simply of two 2D + * polynomials to transform both components - the output coordinates depend + * only on the input coordinates and no other quantities of objects at those + * coordinates. + * + */ +typedef struct +{ + psPolynomial2D* x; ///< 2D polynomial transform of X coordinates + psPolynomial2D* y; ///< 2D polynomial transform of Y coordinates +} +psPlaneTransform; + +/** 4D Polynomial Transform + * + * A transform between coordinate systems that consists of two 4D polynomials + * in which the output coordinates are also specified to be a function of the + * magnitude and color of the object with the given coordinates. This type of + * coordinate transformation is necessary to represent the (color-dependent) + * optical distortions caused by the atmosphere and camera optics, and the + * possibly effects of charge transfer inefficiency. + * + * The lowest two terms are the x and y axis of the target system. The higher + * two terms may represent magnitude and color terms. + */ +typedef struct +{ + psPolynomial4D* x; ///< 4D polynomial transform of X coordinates + psPolynomial4D* y; ///< 4D polynomial transform of Y coordinates +} +psPlaneDistort; + +/** Projection type for projection/deprojection + * + * @see psProject, psDeproject + * + */ +typedef enum { + PS_PROJ_LIN, ///< Linear projection + PS_PROJ_PLY, ///< Linear polynomial projection + PS_PROJ_WRP, ///< Linear polynomial projection + PS_PROJ_TAN, ///< Tangent projection + PS_PROJ_DIS, ///< Sine projection + PS_PROJ_SIN, ///< Sine projection + PS_PROJ_STG, ///< Sine projection + PS_PROJ_ZEA, ///< Sine projection + PS_PROJ_ZPL, ///< Sine projection + PS_PROJ_AIT, ///< Aitoff projection + PS_PROJ_PAR, ///< Par projection + PS_PROJ_GLS, ///< GLS projection + PS_PROJ_CAR, ///< CAR projection + PS_PROJ_MER, ///< MER projection + PS_PROJ_NTYPE ///< Number of types; must be last. +} psProjectionType; + +/** Parameter set for projection/deprojection + * + * @see psProject, psDeproject + * + */ +typedef struct +{ + double R; ///< Coordinates of projection center + double D; ///< Coordinates of projection center + double Xs; ///< plate-scale in X direction + double Ys; ///< plate-scale in Y direction + psProjectionType type; ///< Projection type +} +psProjection; + +/** Allocates a psPlane + * + * @return psPlane* resulting plane structure. + */ +psPlane* psPlaneAlloc(void); + +/** Allocates a psSphere + * + * @return psSphere* resulting sphere structure. + */ +psSphere* psSphereAlloc(void); + +/** Allocates a psCube + * + * @return psCube* resulting cubic structure. + */ +psCube* psCubeAlloc(void); + +/** Allocates a psPlaneTransform transform. + * + * @return psPlaneTransform* resulting plane transform + */ + +psPlaneTransform* psPlaneTransformAlloc( + int order1, ///< The order of the x term in the transform. + int order2 ///< The order of the y term in the transform. +); + +/** Applies the psPlaneTransform transform to a specified coordinate + * + * @return psPlane* resulting coordinate based on transform + */ +psPlane* psPlaneTransformApply( + psPlane* out, ///< a psPlane to recycle. If NULL, a new one is generated. + const psPlaneTransform* transform, ///< the transform to apply + const psPlane* coords ///< the coordinate to apply the transform above. +); + +/** Allocates a psPlaneDistort transform. + * + * @return psPlaneDistort* resulting plane distort transform + */ + +psPlaneDistort* psPlaneDistortAlloc( + int order1, ///< The order of the w term in the transform. + int order2, ///< The order of the x term in the transform. + int order3, ///< The order of the y term in the transform. + int order4 ///< The order of the z term in the transform. +); + + +/** Applies the psPlaneDistort transform to a specified coordinate + * + * @return psPlane* resulting coordinate based on transform + */ +psPlane* psPlaneDistortApply( + psPlane* out, ///< a psPlane to recycle. If NULL, a new one is generated. + const psPlaneDistort* distort, ///< the transform to apply + const psPlane* coords, ///< the coordinate to apply the transform above. + float mag, ///< third term -- maybe magnitude + float color ///< forth term -- maybe color +); + +/** Allocates memory for a psProjection structure + * + * @return psProjection* psProjection structure + */ +psProjection* psProjectionAlloc( + double R, ///< Right-ascension of projection center. + double D, ///< Declination of projection center. + double Xs, ///< Scale in x-dimension + double Ys, ///< Scale in y-dimension + psProjectionType type +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPlane structure, false otherwise. + */ +bool psMemCheckPlane( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psSphere structure, false otherwise. + */ +bool psMemCheckSphere( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psCube structure, false otherwise. + */ +bool psMemCheckCube( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPlaneTransform structure, false otherwise. + */ +bool psMemCheckPlaneTransform( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPlaneDistort structure, false otherwise. + */ +bool psMemCheckPlaneDistort( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psProjection structure, false otherwise. + */ +bool psMemCheckProjection( + psPtr ptr ///< the pointer whose type to check +); + + +/** Projects a spherical coordinate to a linear coordinate system + * + * @return psPlane* projected coordinate + */ +psPlane* psProject( + psPlane *out, + const psSphere* coord, ///< coordinate to project + const psProjection* projection ///< parameters of the projection +); + +/** Reverse projection of a linear coordinate to a spherical coordinate system + * + * @return psPlane* projected coordinate + */ +psSphere* psDeproject( + psSphere *outSphere, + const psPlane* coord, ///< coordinate to project + const psProjection* projection ///< parameters of the projection +); + +/** Takes a given transform and inverts it linearly if possible. + * + * @return psPlaneTransform + * the linearly inverted transform +*/ +psPlaneTransform *p_psPlaneTransformLinearInvert( + psPlaneTransform *transform ///< transform to invert +); + +/** Takes a transform and tests whether or not it is a linear projection. + * + * @return psS32 + * the order of the projection +*/ +bool p_psIsProjectionLinear( + psPlaneTransform *transform ///< transform to test for linearity +); + + +/** inverts a given transformation. + * + * It may assume that the input transformation is one-to-one, and that the + * inverse transformation may be specified through using polynomials of the + * same type and order as the forward transformation. In the event that the + * input transformation is linear, an exact solution may be calculated; + * otherwise nSamples samples in each axis, covering the region specified by + * region shall be used as a grid to fit the best inverse transformation. The + * function shall return NULL if it was unable to generate the inverse + * transformation; otherwise it shall return the inverse transformation. In + * the event that out is NULL, a new psPlaneTransform shall be allocated and + * returned. + * + * @return psPlaneTransform* the resulting inverted transform + */ +psPlaneTransform* psPlaneTransformInvert( + psPlaneTransform *out, ///< a transform to recycle, or NULL if one is to be created. + const psPlaneTransform *in, ///< transform to invert + psRegion region, ///< region to fit for non-linear transform inversion + int nSamples ///< number of samples in each axis for fit +); + +/** Creates a single transformation that has the effect of performing trans1 + * followed by trans2. + * + * psPlaneTransformCombine takes two transformations (trans1 and trans2) and + * returns a single transformation that has the effect of performing trans1 + * followed by trans2. In the event that the input transformation is linear, + * an exact solution may be calculated; otherwise nSamples samples in each + * axis, covering the region specified by region shall be used as a grid to + * fit the best inverse transformation. The function shall return NULL if it + * was unable to generate the transformation; otherwise it shall return the + * transformation. + * + * @return psPlaneTransform* resulting transformation + */ +psPlaneTransform* psPlaneTransformCombine( + psPlaneTransform *out, ///< a transform to recycle, or NULL if one is to be created. + const psPlaneTransform *trans1, ///< first transform to combine + const psPlaneTransform *trans2, ///< first transform to combine + psRegion region, ///< region to cover (for non-linear transforms) + int nSamples ///< number of samples on each axis (for non-linear transforms) +); + + +/** takes two arrays containing matched coordinates and returns the + * best-fitting transformation. + * + * psPlaneTransformFit takes two arrays containing matched coordinates (i.e., + * coordinates in the source array correspond to the coordinates in the dest + * array) and returns the best-fitting transformation. The source and dest + * will contain psCoords. In the event that the number of coordinates in each + * is not identical, the function shall generate a warning, and extra + * coordinates in the longer of the two shall be ignored. The trans transform + * may not be NULL, since it specifies the desired order, polynomial type and + * any polynomial terms to mask. nRejIter rejection iterations shall be + * performed, wherein coordinates lying more than sigmaClip standard + * deviations from the fit shall be rejected. + * + * @return bool TRUE if successful, otherwise FALSE. + */ +bool psPlaneTransformFit( + psPlaneTransform *trans, ///< desired order, polynomial type, & polynomial mask terms + const psArray *source, ///< coordinates matching those in dest + const psArray *dest, ///< coordinates matching those in source + int nRejIter, ///< number of rejection iterations to be performed + float sigmaClip ///< coordinates above this number of standard deviations will be rejected +); +//XXX: need to add doxygen comments on the parameters above. -rdd + +/** Converts from a 3-dimensional coordinate system to an angular coordinate system. + * + * @return psSphere* The former psCube in terms of a psSphere. + */ +psSphere *psCubeToSphere( + const psCube *cube ///< psCube to convert +); + +/** Converts from an angular coordinate system to a 3-dimensional coordinate system. + * + * @return psCube* The former psSphere in terms of a psCube. + */ +psCube *psSphereToCube( + const psSphere *sphere ///< psSphere to convert +); + + +/** Calculates the derivative of the specified psPlaneTransform with respect to x and y. + * + * @return psPlane* The derivative. + */ +psPlane *psPlaneTransformDeriv( + psPlane *out, + const psPlaneTransform *transformation, + const psPlane *coord +); + +/** Generates a list of pixels in the output coordinate frame that overlap the input + * pixels in the input coordinate frame through the specified transformation, inToOut. + * + * psPixelsTransform is more complicated than simply transforming the input pixels, + * but requires the evaluation of the derivatives of the transformation in order to + * obtain the list of all pixels in the output coordinate frame that possibly overlap + * the pixel in the input coordinate frame. In the event that input or inToOut are + * NULL, the function shall generate an error and return NULL. If out is non-NULL it + * shall be modified and returned; otherwise a new psPixels shall be allocated and + * returned. + * + * @return psPixels*: the list of overlapping pixels. + */ +psPixels *psPixelsTransform( + psPixels *out, ///< output list of overlapping pixels + const psPixels *input, ///< input list of pixels + const psPlaneTransform *inToOut ///< specified transformation +); + +char * psProjectTypeToString (psProjectionType type, char *prefix); +psProjectionType psProjectTypeFromString (char *name); + + +#define PS_PRINT_PLANE_TRANSFORM(NAME) \ +{ \ + printf("---------------------- Plane Transform ----------------------\n"); \ + printf("x:\n"); \ + PS_POLY_PRINT_2D(NAME->x); \ + printf("y:\n"); \ + PS_POLY_PRINT_2D(NAME->y); \ +} \ + +/// @} +#endif // #ifndef PS_COORD_H Index: /branches/rel-1-1/psLib/src/astro/psEarthOrientation.c =================================================================== --- /branches/rel-1-1/psLib/src/astro/psEarthOrientation.c (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psEarthOrientation.c (revision 12167) @@ -0,0 +1,1390 @@ +/** @file psEarthOrientation.c + * + * @brief Function implementations for earth orientation calculations + * + * @ingroup EarthOrientation + * + * @author Dave Robbins, MHPCC + * @author Robert Daniel DeSonia, MHPCC + * + * @version $Revision: 1.45 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 01:15:49 $ + * + * Copyright 2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psEarthOrientation.h" +#include "psArray.h" +#include "psPolynomial.h" +#include "psVector.h" +#include "psMetadata.h" +#include "psMetadataConfig.h" +#include "psError.h" + +#include "psMemory.h" +#include "psCoord.h" +#include "psAssert.h" + +// Sun's Mass (src: Google's Calculator Service) +#define PS_M 1.98892e30 /* kilograms */ +// Newton's Gravitational Constant (src:NIST) +#define PS_G 6.6742e-11 /* m^3/kg/s^2 */ +// Speed of light in vacuum (src:NIST) +#define PS_C0 299792458.0 /* m/s */ +// Average distance from earth to sun +#define PS_AU 149597890000.0 /* meters */ +// Modified Julian Day 1/1/2000 00:00:00 +#define MJD_2000 51544.5 +// Days in Julian century +#define JULIAN_CENTURY 36525.0 + +//The arrays used for storage of x,y,&s-values extracted from the precession data tables. +// Created in p_psEOCInit from finalsTable and used in psPrecessionModel. +static psArray* xTable = NULL; +static psArray* yTable = NULL; +static psArray* sTable = NULL; + +//used for storage of the IERS precession table. Should contain MJD date followed by the +// corresponding dX & dY values from the finals2000A table. (Used in psPrecessionCorr.) +static psArray* iersTable = NULL; +//used for precession data. Should contain MJD date followed by the corresponding X, Y, & +// UT1-UTC values from the finals2000A table. (Used in psPrecessionModel, psGetPolarMotion). +static psArray* finalsTable = NULL; + +//1D Polynomials created from the coefficients given by the tab5.2?.txt files. Used +// by psPrecessionModel to determine psEarthPole components. +static psPolynomial1D* xPoly = NULL; +static psPolynomial1D* yPoly = NULL; +static psPolynomial1D* sPoly = NULL; + +//Boolean variable to tell whether the above EOC data has been initialized. +static bool eocInitialized = false; + +//Internal function used for conversion from a 3x3 rotation matrix to a quaternion (psSphereRot). +static psSphereRot *rotMatrix_To_Quat(double A[3][3]); + +static void earthPoleFree(psEarthPole *pole) +{ + // There are non dynamic allocated items +} + +psEarthPole *psEarthPoleAlloc(void) +{ + psEarthPole* pole = psAlloc(sizeof(psEarthPole)); + psMemSetDeallocator(pole, (psFreeFunc) earthPoleFree); + pole->x = 0.0; + pole->y = 0.0; + pole->s = 0.0; + return pole; +} + +bool p_psEOCInit() +{ + unsigned int nFail = 0; + + // Read config file + psMetadata* eocMetadata = psMetadataConfigRead(NULL, + &nFail, + p_psTimeConfigFileName(), + true); + //Make sure reading of config file worked correctly + if(eocMetadata == NULL) { + return false; + } else if(nFail != 0) { + return false; + } + + bool success = false; + // Get table formats & error if lookups fail. + char* tableFormat = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.format"); + if(! success || tableFormat == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.table.format"); + return false; + } + + char* xTableName = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.file.x"); + if(! success || xTableName == NULL) { + psFree(tableFormat); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.x.file"); + return false; + } + + char* yTableName = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.file.y"); + if(! success || yTableName == NULL) { + psFree(tableFormat); + psFree(xTableName); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.y.file"); + return false; + } + + char* sTableName = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.file.s"); + if(! success || sTableName == NULL) { + psFree(tableFormat); + psFree(xTableName); + psFree(yTableName); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.s.file"); + return false; + } + + char* iersTableName = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.file.iers"); + if(! success || sTableName == NULL) { + psFree(tableFormat); + psFree(xTableName); + psFree(yTableName); + psFree(sTableName); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.iers.file"); + return false; + } + + char* finalsTableName = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.table.file.final"); + if(! success || sTableName == NULL) { + psFree(tableFormat); + psFree(xTableName); + psFree(yTableName); + psFree(sTableName); + psFree(iersTableName); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.finals.file"); + return false; + } + + char* iersTableFormat = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.iers.table.format"); + if(! success || iersTableFormat == NULL) { + psFree(tableFormat); + psFree(xTableName); + psFree(yTableName); + psFree(sTableName); + psFree(iersTableName); + psFree(finalsTableName); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.iers.table.format"); + return false; + } + + char* finalsTableFormat = psMetadataLookupStr(&success, eocMetadata, + "psLib.eoc.precession.finals.table.format"); + if(! success || iersTableFormat == NULL) { + psFree(tableFormat); + psFree(xTableName); + psFree(yTableName); + psFree(sTableName); + psFree(iersTableName); + psFree(finalsTableName); + psFree(iersTableFormat); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.iers.table.format"); + return false; + } + + //Extract the necessary data to setup the tables + xTable = psVectorsReadFromFile(xTableName, tableFormat); + yTable = psVectorsReadFromFile(yTableName, tableFormat); + sTable = psVectorsReadFromFile(sTableName, tableFormat); + iersTable = psVectorsReadFromFile(iersTableName, iersTableFormat); + finalsTable = psVectorsReadFromFile(finalsTableName, finalsTableFormat); + + //Check that the data extraction was performed successfully. + if(xTable == NULL || yTable == NULL || sTable == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Failed to read the precession-nutation model tables."); + return false; + } + if(iersTable == NULL || finalsTable == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Failed to read the IERS/finals tables."); + return false; + } + + //Load the coefficient data to setup the polynomials. + psVector* xCoeff = psMetadataLookupPtr(&success, eocMetadata, "psLib.eoc.precession.poly.x"); + if(! success || xCoeff == NULL || xCoeff->type.type != PS_TYPE_F64) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.poly.x"); + return false; + } + psVector* yCoeff = psMetadataLookupPtr(&success, eocMetadata, "psLib.eoc.precession.poly.y"); + if(! success || yCoeff == NULL || yCoeff->type.type != PS_TYPE_F64) { + psFree(xCoeff); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.poly.y"); + return false; + } + psVector* sCoeff = psMetadataLookupPtr(&success, eocMetadata, "psLib.eoc.precession.poly.s"); + if(! success || sCoeff == NULL || sCoeff->type.type != PS_TYPE_F64) { + psFree(xCoeff); + psFree(yCoeff); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.eoc.precession.poly.s"); + return false; + } + //Allocate the X,Y,&S polynomials to be used for earthpole calculations + xPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, xCoeff->n); + memcpy(xPoly->coeff, xCoeff->data.F64,PSELEMTYPE_SIZEOF(PS_TYPE_F64)*xCoeff->n); + yPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, yCoeff->n); + memcpy(yPoly->coeff, yCoeff->data.F64,PSELEMTYPE_SIZEOF(PS_TYPE_F64)*yCoeff->n); + sPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, sCoeff->n); + memcpy(sPoly->coeff, sCoeff->data.F64,PSELEMTYPE_SIZEOF(PS_TYPE_F64)*sCoeff->n); + + psFree(eocMetadata); + + return true; +} + +bool p_psEOCFinalize(void) +{ + psFree(xTable); + psFree(yTable); + psFree(sTable); // There are non dynamic allocated items + psFree(iersTable); + psFree(finalsTable); + + xTable = NULL; + yTable = NULL; + sTable = NULL; + iersTable = NULL; + finalsTable = NULL; + + psFree(xPoly); + psFree(yPoly); + psFree(sPoly); + + xPoly = NULL; + yPoly = NULL; + sPoly = NULL; + + eocInitialized = false; + + return true; +} + +psSphere *psAberration(psSphere *apparent, + const psSphere *actual, + const psSphere *direction, + double speed) +{ + //Check for valid inputs + PS_ASSERT_PTR_NON_NULL(actual, NULL); + PS_ASSERT_PTR_NON_NULL(direction, NULL); + if (fabs(speed) < DBL_EPSILON) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Aberration speed should not be equal to 0.\n"); + return NULL; + } + if (fabs(speed) > 1.0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Aberration speed should not greater than the speed of light!.\n"); + return NULL; + } + + psCube *rp = psCubeAlloc(); + psCube *r_p = psCubeAlloc(); + double mu = 0.0; + double mu_p = 0.0; + double a = 0.0; + + //Convert the spherical input coords direction and actual to cubic coords for computations. + psCube* directionVector = NULL; + directionVector = psSphereToCube(direction); + if (directionVector == NULL) { + PS_ASSERT_PTR_NON_NULL(directionVector, NULL); + } + psCube* actualVector = NULL; + actualVector = psSphereToCube(actual); + if (actualVector == NULL) { + PS_ASSERT_PTR_NON_NULL(actualVector, NULL); + } + + //Calculate mu as the dot-product of direction and actual (from ADD) + mu = (directionVector->x*actualVector->x + + directionVector->y*actualVector->y + + directionVector->z*actualVector->z); + //Calculate r-perpendicular (as in sec 3.5.3.2 of ADD). actual = r-hat, direction = beta-hat. + rp->x = actualVector->x - mu * directionVector->x; + rp->y = actualVector->y - mu * directionVector->y; + rp->z = actualVector->z - mu * directionVector->z; + //Calculate mu-prime. (Eqn. 129 of ADD). + mu_p = mu - speed * ((mu * mu - 1.0) / (1.0 - speed * mu)); + //Calculate a-value. (a = sqrt[ (1 - mu-prime^2) / modulus(r-perpendicular) ] ) + a = (1.0 - mu_p * mu_p) / (rp->x * rp->x + rp->y * rp->y + rp->z * rp->z); + if (a < 0.0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid parameter. a-value cannot be negative.\n"); + psFree(rp); + psFree(r_p); + psFree(directionVector); + psFree(actualVector); + psFree(apparent); + return NULL; + } else { + a = sqrt(a); + } + //Calculate r-prime values. r-prime = mu-prime * beta-hat + a * r-perpendicular + r_p->x = mu_p * directionVector->x + a * rp->x; + r_p->y = mu_p * directionVector->y + a * rp->y; + r_p->z = mu_p * directionVector->z + a * rp->z; + //If apparent is non-NULL, deallocate it for use with psCubeToSphere + if (apparent != NULL) { + psFree(apparent); + } + //Convert r-prime to spherical coordinates for output. + apparent = psCubeToSphere(r_p); + if (apparent == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psCubeToSphere returned a NULL sphere in psAberration.\n"); + return NULL; + } + psFree(rp); + psFree(r_p); + psFree(directionVector); + psFree(actualVector); + + return apparent; +} + +psSphere *psGravityDeflection(psSphere *apparent, + psSphere *actual, + psSphere *sun) +{ + //Check for valid inputs + PS_ASSERT_PTR_NON_NULL(actual, NULL); + PS_ASSERT_PTR_NON_NULL(sun, NULL); + + psSphere *temp = psSphereAlloc(); + psCube* sunVector = psSphereToCube(sun); + psCube* actualVector = psSphereToCube(actual); + + // use dot product to calculate the angle of separation + double dotProd = (sunVector->x*actualVector->x + + sunVector->y*actualVector->y + sunVector->z*actualVector->z); + double theta, sunMag, actMag; + sunMag = sqrt(sunVector->x*sunVector->x + sunVector->y*sunVector->y + + sunVector->z*sunVector->z); + actMag = sqrt(actualVector->x*actualVector->x + actualVector->y*actualVector->y + + actualVector->z*actualVector->z); + dotProd = dotProd / (sunMag * actMag); + theta = acos(dotProd); + + printf(" Theta = %.13g\n", theta); + double r0 = PS_AU * tan(theta); + printf(" r0 = %.19e\n", r0); + double deflection = 4.0*PS_G*PS_M/(PS_C0*PS_C0*r0); + + // make sure the deflection is not greater than 1.75 arcsec + double limit = SEC_TO_RAD(1.75); + if (deflection > limit) { + //if deflection is greater than limit, the light rays will hit the sun + psWarning("Invalid positions. Light ray will not be seen on earth.\n"); + psFree(actualVector); + psFree(sunVector); + return apparent; + } + + + if (apparent != NULL) { + psFree(apparent); + } + // bend the actual vector away from the sun vector by deflection angle. + theta = 0.0; + double phi = 0.0; + // deflection = SEC_TO_RAD(deflection) * 1e6; + // deflection *= M_PI * 1e-2; + theta = atan(r0/PS_AU) * tan(deflection); + // phi = sqrt( deflection*deflection - theta*theta ); + // phi = deflection * cos(asin(theta/deflection)); + + // phi = sqrt(theta*theta - deflection*deflection); + // phi = deflection * cos(asin(theta/deflection)) * 3e-2; + // phi = cos(asin(theta/deflection)); + // phi = asin(theta/deflection); + + // apparent->r = theta; + // apparent->d = phi; + /* + actualVector->x += actualVector->x*deflection; + actualVector->y += actualVector->y*deflection; + actualVector->z += actualVector->z*deflection; + apparent = psCubeToSphere(actualVector); + */ + theta = tan(sun->r - actual->r) * deflection; + phi = tan(sun->d - actual->d) * deflection; + + printf(" Theta = %.13g\n", theta); + printf(" phi = %.13g\n", phi); + + temp->r = theta; + temp->d = phi; + apparent = psSphereSetOffset(actual, temp, PS_SPHERICAL, PS_RADIAN); + + psFree(actualVector); + psFree(sunVector); + psFree(temp); + + return apparent; +} + +psEarthPole *psEOC_PrecessionModel(const psTime *time) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time, NULL); + if (time->type == PS_TIME_UT1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid time input. Time cannot be of type UT1.\n"); + return NULL; + } + + // Convert psTime to MJD + double MJD = psTimeToMJD(time); + if (isnan(MJD)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + + // Calculate number of Julian centuries since 2000 + double t = ( MJD - MJD_2000 ) / JULIAN_CENTURY; + double t2 = t*t; + double t3 = t*t*t; + double t4 = t*t*t*t; + + // The following formulae are from the ADD (& s5.8 of IERS Technical Note 32): + double F[14]; + // Mean Anomaly of the Moon (l) + F[0] = DEG_TO_RAD(134.96340251) + + SEC_TO_RAD(1717915923.2178)*t + + SEC_TO_RAD(31.8792)*t2 + + SEC_TO_RAD(0.051635)*t3 - + SEC_TO_RAD(0.00024470)*t4; + // Mean Anomaly of the Sun (l') + F[1] = DEG_TO_RAD(357.52910918) + + SEC_TO_RAD(129596581.0481)*t - + SEC_TO_RAD(0.5532)*t2 + + SEC_TO_RAD(0.000136)*t3 - + SEC_TO_RAD(0.00001149)*t4; + // L - Omega (L = Mean Longitude of the Moon, Omega = F4) + F[2] = DEG_TO_RAD(93.27209062) + + SEC_TO_RAD(1739527262.8478)*t - + SEC_TO_RAD(12.7512)*t2 - + SEC_TO_RAD(0.001037)*t3 + + SEC_TO_RAD(0.00000417)*t4; + // Mean Elongation of the Moon from the Sun (D) + F[3] = DEG_TO_RAD(297.85019547) + + SEC_TO_RAD(1602961601.2090)*t - + SEC_TO_RAD(6.3706)*t2 + + SEC_TO_RAD(0.006593)*t3 - + SEC_TO_RAD(0.00003169)*t4; + // Mean Longitude of the Ascending Node of the Moon (Omega) + F[4] = DEG_TO_RAD(125.04455501) - + SEC_TO_RAD(6962890.5431)*t + + SEC_TO_RAD(7.4722)*t2 + + SEC_TO_RAD(0.007702)*t3 - + SEC_TO_RAD(0.0000593)*t4; + //F5-F13 are the mean longitudes of the planets + F[5] = 4.402608842 + 2608.7903141574*t; + F[6] = 3.176146697 + 1021.3285546211*t; + F[7] = 1.753470314 + 628.3075849991*t; + F[8] = 6.203480913 + 334.0612426700*t; + F[9] = 0.599546497 + 52.9690962641*t; + F[10] = 0.874016757 + 21.3299104960*t; + F[11] = 5.481293872 + 7.4781598567*t; + F[12] = 5.311886287 + 3.8133035638*t; + F[13] = 0.024381750*t + 0.00000538691*t2; + + // Check if EOC data loaded + if(! eocInitialized) { + eocInitialized = p_psEOCInit(); + if(!eocInitialized) { + psError(PS_ERR_UNKNOWN, false, + "Could not initialize EOC tables -- check data files."); + return NULL; + } + } + // calculate the polynomial portion first + double X = psPolynomial1DEval(xPoly,t); + double Y = psPolynomial1DEval(yPoly,t); + double S = psPolynomial1DEval(sPoly,t); + //Units from the table & coefficients are in micro-arcseconds so convert to radians. + X = SEC_TO_RAD(X * 1e-6); + Y = SEC_TO_RAD(Y * 1e-6); + S = SEC_TO_RAD(S * 1e-6); + + // now calculate the non-poly portion from the tables + psF64* cols[17]; //Used to store all of the table information from tab5.2?.dat + for (int lcv = 0; lcv < 17; lcv++) { + cols[lcv] = ((psVector*)(xTable->data[lcv]))->data.F64; + } + //Get the number of rows in the table and loop through the non-poly contributions. + int numRows = ((psVector*)(xTable->data[0]))->n; + for (int lcv = 0; lcv < numRows; lcv++) { + double arg = 0.0; + //Get the argument- from the table and corresponding F-value. Convert to radians. + for (int k = 0; k < 14; k++) { + arg += cols[k+3][lcv]*F[k]; + } + //The order of t for each part is specified by a column in the tab.dat files. + double tj = pow(t,cols[0][lcv]); + double as = cols[1][lcv]; + double ac = cols[2][lcv]; + as = SEC_TO_RAD(as) * 1e-6; + ac = SEC_TO_RAD(ac) * 1e-6; + X += (as*tj*sin(arg) + ac*cos(arg)) * tj; + } + //Do the same procedure from the previous 15 lines for Y. + for (int lcv = 0; lcv < 17; lcv++) { + cols[lcv] = ((psVector*)(yTable->data[lcv]))->data.F64; + } + numRows = ((psVector*)(yTable->data[0]))->n; + for (int lcv = 0; lcv < numRows; lcv++) { + double arg = 0.0; + for (int k = 0; k < 14; k++) { + arg += cols[k+3][lcv]*F[k]; + } + double tj = pow(t,cols[0][lcv]); + double as = cols[1][lcv]; + double ac = cols[2][lcv]; + as = SEC_TO_RAD(as) * 1e-6; + ac = SEC_TO_RAD(ac) * 1e-6; + Y += (as*tj*sin(arg) + ac*cos(arg)) * tj; + } + //Again for S. + for (int lcv = 0; lcv < 17; lcv++) { + cols[lcv] = ((psVector*)(sTable->data[lcv]))->data.F64; + } + numRows = ((psVector*)(sTable->data[0]))->n; + for (int lcv = 0; lcv < numRows; lcv++) { + double arg = 0.0; + for (int k = 0; k < 14; k++) { + arg += cols[k+3][lcv]*F[k]; + } + double tj = pow(t,cols[0][lcv]); + double as = cols[1][lcv]; + double ac = cols[2][lcv]; + as = SEC_TO_RAD(as) * 1e-6; + ac = SEC_TO_RAD(ac) * 1e-6; + S += (as*tj*sin(arg) + ac*cos(arg)) * tj; + } + + //the tables for S actually gives S + XY/2, so let's get the real S now. (from ADD) + S -= X*Y/2.0; + + //Create the output psEarthPole and set the corresponding component values. + psEarthPole* pole = psEarthPoleAlloc(); + pole->x = X; + pole->y = Y; + pole->s = S; + + return pole; +} + +psEarthPole *psEOC_PrecessionCorr(const psTime *time, + psTimeBulletin bulletin) +{ + // Check for null parameter or invalid bulletin + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(bulletin, PS_IERS_A, PS_IERS_B, NULL); + //Convert the input time to MJD. If NAN is returned, return NULL for the function. + double MJD = psTimeToMJD(time); + if (isnan(MJD)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + //Allocate space for the psEarthPole output. + psEarthPole *out = psEarthPoleAlloc(); + + // Check if EOC data loaded + if(!eocInitialized) { + eocInitialized = p_psEOCInit(); + if(!eocInitialized) { + psError(PS_ERR_UNKNOWN, false, + "Could not initialize EOC tables -- check data files."); + return NULL; + } + } + + //Load the data table and store in the corresponding, newly-allocated vectors. + psF64* cols[5]; + for (int colNum = 0; colNum < 5; colNum++) { + cols[colNum] = ((psVector*)(iersTable->data[colNum]))->data.F64; + } + int numRows = ((psVector*)(iersTable->data[0]))->n; + psVector *X = psVectorAlloc(numRows, PS_TYPE_F64); + psVector *Y = psVectorAlloc(numRows, PS_TYPE_F64); + psVector *T = psVectorAlloc(numRows, PS_TYPE_F64); + if (bulletin == PS_IERS_A) { + for (int rowNum = 0; rowNum < numRows; rowNum++) { + T->data.F64[rowNum] = cols[0][rowNum]; + X->data.F64[rowNum] = cols[1][rowNum]; + Y->data.F64[rowNum] = cols[2][rowNum]; + } + } else { + for (int rowNum = 0; rowNum < numRows; rowNum++) { + T->data.F64[rowNum] = cols[0][rowNum]; + X->data.F64[rowNum] = cols[3][rowNum]; + Y->data.F64[rowNum] = cols[4][rowNum]; + } + } + + //The following uses lagrange interpolation to calculate the corrections to X & Y. + double xOut = 0.0; + double yOut = 0.0; + double xTerm = 0.0; + double yTerm = 0.0; + int k = 0; + for (int i = 0; i < (numRows-1); i++) { + if (MJD >= T->data.F64[i] && MJD < T->data.F64[i+1]) { + k = i; + if (k < 2) { + k = 2; + } + if (k > (numRows-2)) { + k = numRows-2; + } + for (int m = k-1; m <= k+2; m++) { + xTerm = X->data.F64[m]; + yTerm = Y->data.F64[m]; + for (int j = k-1; j <= k+2; j++) { + if ( m != j) { + double term = (MJD - T->data.F64[j])/(T->data.F64[m] - T->data.F64[j]); + xTerm *= term; + yTerm *= term; + } + } + xOut += xTerm; + yOut += yTerm; + } + i = numRows-1; + } + } + //Convert the values from milli-arcsecond to radian. + out->x = SEC_TO_RAD(xOut) * 1e-3; + out->y = SEC_TO_RAD(yOut) * 1e-3; + psFree(X); + psFree(Y); + psFree(T); + + return out; +} + +static psSphereRot *rotMatrix_To_Quat(double A[3][3]) +{ + int i; + psSphereRot *new = psSphereRotAlloc(0.0, 0.0, 0.0); + new->q3 = 0.0; + + //Convert rotation matrix to quaternions. Formula directly from ADD. + double diag_sum[3]; + int maxi; + double recip; + diag_sum[0] = 1.0 + A[0][0] - A[1][1] - A[2][2]; + diag_sum[1] = 1.0 - A[0][0] + A[1][1] - A[2][2]; + diag_sum[2] = 1.0 - A[0][0] - A[1][1] + A[2][2]; + diag_sum[3] = 1.0 + A[0][0] + A[1][1] + A[2][2]; + + maxi = 0; + for (i = 1; i < 4; ++i) { + if (diag_sum[i] > diag_sum[maxi]) { + maxi = i; + } + } + + double p = 0.5 * sqrt(diag_sum[maxi]); + recip = 1.0 / (4.0 * p); + + if (maxi == 0) { + new->q0 = p; + new->q1 = recip * (A[0][1] + A[1][0]); + new->q2 = recip * (A[2][0] + A[0][2]); + new->q3 = recip * (A[1][2] - A[2][1]); + } else if (maxi == 1) { + new->q0 = recip * (A[0][1] + A[1][0]); + new->q1 = p; + new->q2 = recip * (A[1][2] + A[2][1]); + new->q3 = recip * (A[2][0] - A[0][2]); + } else if (maxi == 2) { + new->q0 = recip * (A[2][0] + A[0][2]); + new->q1 = recip * (A[1][2] + A[2][1]); + new->q2 = p; + new->q3 = recip * (A[0][1] - A[1][0]); + } else if (maxi == 3) { + new->q0 = recip * (A[1][2] - A[2][1]); + new->q1 = recip * (A[2][0] - A[0][2]); + new->q2 = recip * (A[0][1] - A[1][0]); + new->q3 = p; + } + return new; +} + +psSphereRot* psSphereRot_CEOtoGCRS(const psEarthPole *pole) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(pole,NULL); + double A[3][3]; + psSphereRot *out = NULL; + + //Setup the rotation matrix and scalar value, a, as outlined by the ADD + double a = 1.0 / (1.0 + sqrt(1.0 - (pole->x*pole->x + pole->y*pole->y) ) ); + A[0][0] = (1.0 - a*pole->x*pole->x)*cos(pole->s) - a*pole->x*pole->y*sin(pole->s); + A[1][0] = -a*pole->x*pole->y*cos(pole->s) + (1.0 - a*pole->y*pole->y)*sin(pole->s); + A[2][0] = pole->x*cos(pole->s) + pole->y*sin(pole->s); + A[0][1] = -(1.0 - a*pole->x*pole->x)*sin(pole->s) - a*pole->x*pole->y*cos(pole->s); + A[1][1] = a*pole->x*pole->y*sin(pole->s) + (1.0 - a*pole->y*pole->y)*cos(pole->s); + A[2][1] = -pole->x*sin(pole->s) + pole->y*cos(pole->s); + A[0][2] = -pole->x; + A[1][2] = -pole->y; + A[2][2] = 1.0 - a*(pole->x*pole->x + pole->y*pole->y); + + //Convert the rotation matrix to a psSphereRot (quaternions) + out = rotMatrix_To_Quat(A); + + return out; +} + +psSphereRot* psSphereRot_TEOtoCEO(const psTime *time, + psEarthPole *tidalCorr) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time,NULL); + //Create a copy of the input time that can be manipulated/changed (input time is const). + psTime *in = psTimeCopy(time); + if (in->type != PS_TIME_UT1) { + in = psTimeConvert(in, PS_TIME_UT1); + } + //Check if tidal corrections should be included. + //If so, make sure values are positive and in the correct range. + if (tidalCorr != NULL && fabs(tidalCorr->s) > FLT_EPSILON) { + int nsec = in->nsec + (int)(tidalCorr->s * 1e9); + if (nsec > 1e9) { + nsec += -1e9; + in->sec += 1; + } + if (nsec < 0) { + in->sec += -1; + in->nsec = (int)(1e9) + nsec; + } else { + in->nsec = nsec; + } + } + //Calculate the Julian Date from the input time in UT1 format. + double T = psTimeToJD(in); + if (isnan(T)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to JD failed. Invalid input time.\n"); + return NULL; + } + T += -2451545.0; + //Formula for theta comes directly from the ADD. Create output psSphereRot from theta. + double theta = 2.0 * M_PI * (0.7790572732640 + 1.00273781191135448 * T); + psSphereRot *out = psSphereRotAlloc(theta, 0.0, 0.0); + + psFree(in); + return out; +} + +psEarthPole* psEOC_GetPolarMotion(const psTime *time, + psTimeBulletin bulletin) +{ + PS_ASSERT_PTR_NON_NULL(time, NULL); + PS_ASSERT_INT_WITHIN_RANGE(bulletin, PS_IERS_A, PS_IERS_B, NULL); + + psEarthPole *out = psEarthPoleAlloc(); + out->x = 0.0; + out->y = 0.0; + out->s = 0.0; + + double MJD = psTimeToMJD(time); + if ( isnan(MJD) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + + // Check if EOC data loaded + if(! eocInitialized) { + eocInitialized = p_psEOCInit(); + if(!eocInitialized) { + // XXX: Move error message. + psError(PS_ERR_UNKNOWN, false, + "Could not initialize EOC tables -- check data files."); + return NULL; + } + } + + psF64* cols[7]; + for (int colNum = 0; colNum < 7; colNum++) { + cols[colNum] = ((psVector*)(finalsTable->data[colNum]))->data.F64; + } + int numRows = ((psVector*)(finalsTable->data[0]))->n; + psVector *X = psVectorAlloc(numRows, PS_TYPE_F64); + psVector *Y = psVectorAlloc(numRows, PS_TYPE_F64); + // psVector *S = psVectorAlloc(numRows, PS_TYPE_F64); + psVector *T = psVectorAlloc(numRows, PS_TYPE_F64); + if (bulletin == PS_IERS_A) { + for (int rowNum = 0; rowNum < numRows; rowNum++) { + T->data.F64[rowNum] = cols[0][rowNum]; + X->data.F64[rowNum] = cols[1][rowNum]; + Y->data.F64[rowNum] = cols[2][rowNum]; + // S->data.F64[rowNum] = cols[3][rowNum]; + } + } else { + for (int rowNum = 0; rowNum < numRows; rowNum++) { + T->data.F64[rowNum] = cols[0][rowNum]; + X->data.F64[rowNum] = cols[4][rowNum]; + Y->data.F64[rowNum] = cols[5][rowNum]; + // S->data.F64[rowNum] = cols[6][rowNum]; + } + } + + double xOut = 0.0; + double yOut = 0.0; + // double sOut = 0.0; + double xTerm = 0.0; + double yTerm = 0.0; + // double sTerm = 0.0; + int k = 0; + for (int i = 0; i < (numRows-1); i++) { + if (MJD >= T->data.F64[i] && MJD < T->data.F64[i+1]) { + k = i; + if (k < 2) { + k = 2; + } + // if (k > (numRows-2)) { + // k = numRows-2; + // } + for (int m = k-1; m <= k+2; m++) { + xTerm = X->data.F64[m]; + yTerm = Y->data.F64[m]; + // sTerm = S->data.F64[m]; + for (int j = k-1; j <= k+2; j++) { + if ( m != j) { + double term = (MJD - T->data.F64[j])/(T->data.F64[m] - T->data.F64[j]); + xTerm *= term; + yTerm *= term; + // sTerm *= term; + } + } + xOut += xTerm; + yOut += yTerm; + // sOut += sTerm; + } + i = numRows-1; + } + } + out->x = SEC_TO_RAD(xOut); + out->y = SEC_TO_RAD(yOut); + // psEarthPole *polarTideCorr = psEOC_PolarTideCorr(time); + // out->x += polarTideCorr->x; + // out->y += polarTideCorr->y; + // psFree(polarTideCorr); + + // out->s = SEC_TO_RAD(sOut); + + + /* + for (int rowNum = 0; rowNum < numRows; rowNum++) { + if ( (MJD - cols[0][rowNum]) < 1.0 ) { + if (bulletin == PS_IERS_A) { + out->x = cols[1][rowNum]; + out->y = cols[2][rowNum]; + out->s = cols[3][rowNum]; + out->x = SEC_TO_RAD(out->x); + out->y = SEC_TO_RAD(out->y); + out->s = SEC_TO_RAD(out->s); + rowNum = numRows; + } else { + out->x = cols[4][rowNum]; + out->y = cols[5][rowNum]; + out->s = cols[6][rowNum]; + out->x = SEC_TO_RAD(out->x); + out->y = SEC_TO_RAD(out->y); + out->s = SEC_TO_RAD(out->s); + rowNum = numRows; + } + } + } + */ + psFree(X); + psFree(Y); + // psFree(S); + psFree(T); + return out; +} + +static double DMOD(double x, double y) +{ + //Internal function for calculating the remainder of a double quotient. + //used often in the algorithm for psEOC_PolarTideCorr which is the Ray model of + //Simon et. al. from its fortran implementation. + double value = x - y * trunc(x/y); + return value; +} + +psEarthPole* psEOC_PolarTideCorr(const psTime *time) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time, NULL); + // Convert psTime to MJD + double MJD = psTimeToMJD(time); + if (isnan(MJD)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + psEarthPole *out = psEarthPoleAlloc(); + + //Formula comes from fortran reference of the Ray model of Simon et. al. + double T, L, LPRIME, CAPF, CAPD, OMEGA, THETA, CORX, CORY, CORZ; + double ARG1, ARG2, ARG3, ARG4, ARG5, ARG6, ARG7, ARG8; + double T2, T3, T4; + // Calculate number of Julian centuries since 2000 + T = (MJD - 51544.5) / 36525.0; + T2 = T*T; + T3 = T*T*T; + T4 = T*T*T*T; + L = -0.0002447 * T4 + 0.051635 * T3 + 31.8792 * T2 + 1717915923.2178 * T + 485868.249036; + L = DMOD(L, 1296000.0); + LPRIME = -0.00001149 * T4 - 0.000136 * T3 - 0.5532 * T2 + 129596581.0481 * T + 1287104.79305; + LPRIME = DMOD(LPRIME, 1296000.0); + CAPF = 0.00000417 * T4 - 0.001037 * T3 - 12.7512 * T2 + 1739527262.8478 * T + 335779.526232; + CAPF = DMOD(CAPF, 1296000.0); + CAPD = -0.00003169 * T4 + 0.006593 * T3 - 6.3706 * T2 + 1602961601.209 * T + 1072260.70369; + CAPD = DMOD(CAPD, 1296000.0); + OMEGA = -0.00005939 * T4 + 0.007702 * T3 + 7.4722 * T2 - 6962890.2665 * T + 450160.398036; + OMEGA = DMOD(OMEGA, 1296000.0); + THETA = (67310.54841 + (876600.0 * 3600.0 + 8640184.812866) * T + 0.093104 * T2 - + 6.2e-6 * T3) * 15.0 + 648000.0; + ARG7 = DMOD((-L - 2.0 * CAPF - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) + - M_PI / 2.0; + ARG1 = DMOD((-2.0 * CAPF - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) - M_PI / 2.0; + ARG2 = DMOD((-2.0 * CAPF + 2.0 * CAPD - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) + - M_PI / 2.0; + ARG3 = DMOD(THETA * M_PI / 648000.0, 2.0 * M_PI) - M_PI / 2.0; + ARG4 = DMOD((-L - 2.0 * CAPF - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + ARG5 = DMOD((-2.0 * CAPF - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + ARG6 = DMOD((-2.0 * CAPF + 2.0 * CAPD - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, + 2.0 * M_PI); + ARG8 = DMOD((2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + CORX = -0.026 * sin(ARG7) + 0.006 * cos(ARG7) + -0.133 * sin(ARG1) + 0.049 * cos(ARG1) + -0.050 * sin(ARG2) + 0.025 * cos(ARG2) + -0.152 * sin(ARG3) + 0.078 * cos(ARG3) + -0.057 * sin(ARG4) - 0.013 * cos(ARG4) + -0.330 * sin(ARG5) - 0.028 * cos(ARG5) + -0.145 * sin(ARG6) + 0.064 * cos(ARG6) + -0.036 * sin(ARG8) + 0.017 * cos(ARG8); + CORY = -0.006 * sin(ARG7) - 0.026 * cos(ARG7) + -0.049 * sin(ARG1) - 0.133 * cos(ARG1) + -0.025 * sin(ARG2) - 0.050 * cos(ARG2) + -0.078 * sin(ARG3) - 0.152 * cos(ARG3) + +0.011 * sin(ARG4) + 0.033 * cos(ARG4) + +0.037 * sin(ARG5) + 0.196 * cos(ARG5) + +0.059 * sin(ARG6) + 0.087 * cos(ARG6) + +0.018 * sin(ARG8) + 0.022 * cos(ARG8); + CORZ = 0.0245 * sin(ARG7) + 0.0503 * cos(ARG7) + +0.1210 * sin(ARG1) + 0.1605 * cos(ARG1) + +0.0286 * sin(ARG2) + 0.0516 * cos(ARG2) + +0.0864 * sin(ARG3) + 0.1771 * cos(ARG3) + -0.0380 * sin(ARG4) - 0.0154 * cos(ARG4) + -0.1617 * sin(ARG5) - 0.0720 * cos(ARG5) + -0.0759 * sin(ARG6) - 0.0004 * cos(ARG6) + -0.0196 * sin(ARG8) - 0.0038 * cos(ARG8); + CORX = CORX * 1.0e-3; + CORY = CORY * 1.0e-3; + CORZ = CORZ * 0.1e-3; + + CORX = SEC_TO_RAD(CORX); + CORY = SEC_TO_RAD(CORY); + + out->x = CORX; + out->y = CORY; + out->s = CORZ; + + return out; +} + +psEarthPole* psEOC_NutationCorr(psTime *time) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time, NULL); + // Convert psTime to MJD + double MJD = psTimeToMJD(time); + // printf("\nMJD check = %.13g\n", MJD); + if (isnan(MJD)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + + // Calculate number of Julian centuries since 2000 + double t = ( MJD - MJD_2000 ) / JULIAN_CENTURY; + double t2 = t*t; + double t3 = t*t*t; + double t4 = t*t*t*t; + + // The following formulae are from the ADD (& s5.8 of IERS Technical Note 32): + double F[5]; + // Mean Anomaly of the Moon + F[0] = DEG_TO_RAD(134.96340251) + + SEC_TO_RAD(1717915923.2178)*t + + SEC_TO_RAD(31.8792)*t2 + + SEC_TO_RAD(0.051635)*t3 - + SEC_TO_RAD(0.00024470)*t4; + + // Mean Anomaly of the Sun + F[1] = DEG_TO_RAD(357.52910918) + + SEC_TO_RAD(129596581.0481)*t - + SEC_TO_RAD(0.5532)*t2 + + SEC_TO_RAD(0.000136)*t3 - + SEC_TO_RAD(0.00001149)*t4; + + // L âˆ’ Omega (L = Mean Longitude of the Moon, Omega = F4) + F[2] = DEG_TO_RAD(93.27209062) + + SEC_TO_RAD(1739527262.8478)*t - + SEC_TO_RAD(12.7512)*t2 - + SEC_TO_RAD(0.001037)*t3 + + SEC_TO_RAD(0.00000417)*t4; + + // Mean Elongation of the Moon from the Sun + F[3] = DEG_TO_RAD(297.85019547) + + SEC_TO_RAD(1602961601.2090)*t - + SEC_TO_RAD(6.3706)*t2 + + SEC_TO_RAD(0.006593)*t3 - + SEC_TO_RAD(0.00003169)*t4; + + // Mean Longitude of the Ascending Node of the Moon + F[4] = DEG_TO_RAD(125.04455501) - + SEC_TO_RAD(6962890.5431)*t + + SEC_TO_RAD(7.4722)*t2 + + SEC_TO_RAD(0.007702)*t3 - + SEC_TO_RAD(0.00005939)*t4; + + //argument values taken from table 5.1 in IERS techical note No.32 + //http://maia.usno.navy.mil/conv2000/chapter5/tn32_c5.pdf, p38 + //Units are in micro-arcseconds here and must be converted to radians before using + double w_l[10] = {SEC_TO_RAD(-1.0), + SEC_TO_RAD(-1.0), + SEC_TO_RAD(1.0), + 0.0, + 0.0, + SEC_TO_RAD(-1.0), + 0.0, + 0.0, + 0.0, + SEC_TO_RAD(1.0)}; + double w_l_p[10] = {0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0}; + double w_F[10] = {SEC_TO_RAD(-2.0), + SEC_TO_RAD(-2.0), + SEC_TO_RAD(-2.0), + SEC_TO_RAD(-2.0), + SEC_TO_RAD(-2.0), + 0.0, + SEC_TO_RAD(-2.0), + 0.0, + 0.0, + 0.0}; + double w_D[10] = {0.0, + 0.0, + SEC_TO_RAD(-2.0), + 0.0, + 0.0, + 0.0, + SEC_TO_RAD(2.0), + 0.0, + 0.0, + 0.0}; + double w_Omega[10] = {SEC_TO_RAD(-1.0), + SEC_TO_RAD(-2.0), + SEC_TO_RAD(-2.0), + SEC_TO_RAD(-1.0), + SEC_TO_RAD(-2.0), + 0.0, + SEC_TO_RAD(-2.0), + 0.0, + SEC_TO_RAD(-1.0), + 0.0}; + double xp_sin[10] = {SEC_TO_RAD(-0.44), + SEC_TO_RAD(-2.31), + SEC_TO_RAD(-0.44), + SEC_TO_RAD(-2.14), + SEC_TO_RAD(-11.36), + SEC_TO_RAD(0.84), + SEC_TO_RAD(-4.76), + SEC_TO_RAD(14.27), + SEC_TO_RAD(1.93), + SEC_TO_RAD(0.76)}; + double xp_cos[10] = {SEC_TO_RAD(0.25), + SEC_TO_RAD(1.32), + SEC_TO_RAD(0.25), + SEC_TO_RAD(1.23), + SEC_TO_RAD(6.52), + SEC_TO_RAD(-0.48), + SEC_TO_RAD(2.73), + SEC_TO_RAD(-8.19), + SEC_TO_RAD(-1.11), + SEC_TO_RAD(-0.43)}; + double yp_sin[10] = {SEC_TO_RAD(-0.25), + SEC_TO_RAD(-1.32), + SEC_TO_RAD(-0.25), + SEC_TO_RAD(-1.23), + SEC_TO_RAD(-6.52), + SEC_TO_RAD(0.48), + SEC_TO_RAD(-2.73), + SEC_TO_RAD(8.19), + SEC_TO_RAD(1.11), + SEC_TO_RAD(0.43)}; + double yp_cos[10] = {SEC_TO_RAD(-0.44), + SEC_TO_RAD(-2.31), + SEC_TO_RAD(-0.44), + SEC_TO_RAD(-2.14), + SEC_TO_RAD(-11.36), + SEC_TO_RAD(0.84), + SEC_TO_RAD(-4.76), + SEC_TO_RAD(14.27), + SEC_TO_RAD(1.93), + SEC_TO_RAD(0.76)}; + + double X = 0.0; + double Y = 0.0; + + //Implementation adapted from PM_GRAVI in interp.f from hpiers.obspm.fr/eop-pc/models/interp.f + double arg[6] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0}; + arg[0] = (67310.54841 + + (876600.0*3600.0 + 8640184.812866)*t + + 0.093104*t2 - 6.2e-6*t3) * 15.0 + 648000.0; + arg[0] = DMOD(arg[1], 1296000.0); + arg[0] = SEC_TO_RAD(arg[0]); + arg[1] = RAD_TO_SEC(F[0]); + arg[1] = DMOD(arg[1], 1296000.0); + arg[1] = SEC_TO_RAD(arg[1]); + arg[2] = RAD_TO_SEC(F[1]); + arg[2] = DMOD(arg[2], 1296000.0); + arg[2] = SEC_TO_RAD(arg[2]); + arg[3] = RAD_TO_SEC(F[2]); + arg[3] = DMOD(arg[3], 1296000.0); + arg[3] = SEC_TO_RAD(arg[3]); + arg[4] = RAD_TO_SEC(F[3]); + arg[4] = DMOD(arg[4], 1296000.0); + arg[4] = SEC_TO_RAD(arg[4]); + arg[5] = RAD_TO_SEC(F[4]); + arg[5] = DMOD(arg[5], 1296000.0); + arg[5] = SEC_TO_RAD(arg[5]); + + for (int j = 0; j < 10; j++) { + double ag = 0.0; + ag = SEC_TO_RAD(1.0)*arg[0] + w_l[j]*arg[1] + w_l_p[j]*arg[2] + w_F[j]*arg[3] + + w_D[j]*arg[4] + w_Omega[j]*arg[5]; + ag = RAD_TO_SEC(ag); + ag = DMOD(ag, 2.0*M_PI); + X += xp_sin[j] * SEC_TO_RAD(sin(ag)) + xp_cos[j] * SEC_TO_RAD(cos(ag)); + Y += yp_sin[j] * SEC_TO_RAD(sin(ag)) + yp_cos[j] * SEC_TO_RAD(cos(ag)); + } + + psEarthPole *pole = psEarthPoleAlloc(); + pole->x = X; + pole->y = Y; + //The value of s is simply: s = -4.7e-5 * t as specified by the ADD and IERS 32. + pole->s = -SEC_TO_RAD(4.7e-5) * t; + + return pole; +} + +psSphereRot* psSphereRot_ITRStoTEO(const psEarthPole* motion) +{ + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(motion,NULL); + double A[3][3]; + psSphereRot *out = NULL; + + double x,y,s; + x = motion->x; + y = motion->y; + s = motion->s; + s = -s; + + //Setup Rotation matrix. Rotation is constructed by rotation about the X-axis by y, + // about the Y-axis by x, and about the Z-axis by s' (where s' = -s). + A[0][0] = cos(x)*cos(s); + A[1][0] = cos(x)*sin(s); + A[2][0] = -sin(x); + A[0][1] = sin(x)*sin(y)*cos(s) - cos(y)*sin(s); + A[1][1] = sin(x)*sin(y)*sin(s) + cos(y)*cos(s); + A[2][1] = cos(x)*sin(y); + A[0][2] = sin(x)*cos(y)*cos(s) + sin(y)*sin(s); + A[1][2] = sin(x)*cos(y)*sin(s) - sin(y)*cos(s); + A[2][2] = cos(x)*cos(y); + + //Convert rotation matrix to quaternions + out = rotMatrix_To_Quat(A); + + return out; +} + +psSphereRot *psSpherePrecess(const psTime *fromTime, + const psTime *toTime, + psPrecessMethod mode) +{ + // Check input for NULL pointers + if (fromTime == NULL && toTime == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid time inputs. fromTime & toTime cannot both be NULL.\n"); + return NULL; + } + PS_ASSERT_INT_WITHIN_RANGE(mode, PS_PRECESS_ROUGH, PS_PRECESS_IAU2000A, NULL); + psF64 fromMJD, toMJD; + // Calculate Julian centuries + //If either input time is NULL, assume it to be J2000 -> from SDRS as of rev 18 + psTime *from = NULL; + psTime *to = NULL; + if (fromTime == NULL) { + fromMJD = MJD_2000; + from = psTimeFromMJD(fromMJD); + } else { + fromMJD = psTimeToMJD(fromTime); + from = psTimeCopy(fromTime); + } + if (toTime == NULL) { + toMJD = MJD_2000; + to = psTimeFromMJD(toMJD); + } else { + toMJD = psTimeToMJD(toTime); + to = psTimeCopy(toTime); + } + if (fromMJD > toMJD) { + psWarning("From time is later than to time in psSpherePrecess.\n"); + } + + if (mode == PS_PRECESS_ROUGH) { + //For PS_PRECESS_ROUGH, no time/earthpole corrections are used. This is the + //lowest level of detail mode. + psF64 T = (toMJD - fromMJD) / JULIAN_CENTURY; + + // Calculate conversion constants + // psF64 alphaP = DEG_TO_RAD(90.0) - ((DEG_TO_RAD(0.6406161) * T) + + psF64 alphaP = DEG_TO_RAD(180.0) + ((DEG_TO_RAD(0.6406161) * T) + + (DEG_TO_RAD(0.0000839) * T * T) + + (DEG_TO_RAD(0.000005) * T * T * T)); + + psF64 deltaP = (DEG_TO_RAD(0.5567530) * T) - + (DEG_TO_RAD(0.0001185) * T * T) - + (DEG_TO_RAD(0.0000116) * T * T * T); + + // psF64 phiP = DEG_TO_RAD(90.0) + ((DEG_TO_RAD(0.6406161) * T) + + psF64 phiP = DEG_TO_RAD(180.0) + ((DEG_TO_RAD(0.6406161) * T) + + (DEG_TO_RAD(0.0003041) * T * T) + + (DEG_TO_RAD(0.0000051) * T * T * T)); + + // Create transform with proper constants + psSphereRot* tmpST = psSphereRotAlloc(alphaP, deltaP, phiP); + psFree(from); + psFree(to); + return tmpST; + } else if (mode == PS_PRECESS_IAU2000A) { + //For IAU2000A mode, run psEOC_PrecessionModel and then psSphereRot_CEOtoGCRS for + //each time. Then difference the resulting rotations by adding the inverse + //rotation corresponding to fromTime to the toTime rotation. + + //Calculate the earthpoles and quaternions corresponding to each time (from, to). + //Combine the quaternions to produce the output psSphereRot. + psEarthPole *fromEP = psEOC_PrecessionModel(from); + psSphereRot *fromRot = psSphereRot_CEOtoGCRS(fromEP); + psEarthPole *toEP = psEOC_PrecessionModel(to); + psSphereRot *toRot = psSphereRot_CEOtoGCRS(toEP); + psSphereRot *fromConj = psSphereRotConjugate(NULL, fromRot); + psSphereRot *out = psSphereRotCombine(NULL, toRot, fromConj); + psFree(from); + psFree(to); + psFree(fromEP); + psFree(fromRot); + psFree(toEP); + psFree(toRot); + psFree(fromConj); + return out; + } else if (mode == PS_PRECESS_COMPLETE_A) { + //For PS_PRECESS_COMPLETE_A the same procedure as IAU2000A is used but with + //additional earthpole corrections from psEOC_PrecessionCorr. The corrections + //for COMPLETE_A come from the IERS Bulletin A. + + //Calculate the earthpoles and quaternions corresponding to each time (from, to). + //Add in the precession corrections from IERS bulletin A. + //Combine the quaternions to produce the output psSphereRot. + psEarthPole *fromEP = psEOC_PrecessionModel(from); + psEarthPole *fromCorr = psEOC_PrecessionCorr(from, PS_IERS_A); + fromEP->x += fromCorr->x; + fromEP->y += fromCorr->y; + psSphereRot *fromRot = psSphereRot_CEOtoGCRS(fromEP); + psEarthPole *toEP = psEOC_PrecessionModel(to); + psEarthPole *toCorr = psEOC_PrecessionCorr(to, PS_IERS_A); + toEP->x += toCorr->x; + toEP->y += toCorr->y; + psSphereRot *toRot = psSphereRot_CEOtoGCRS(toEP); + psSphereRot *fromConj = psSphereRotConjugate(NULL, fromRot); + psSphereRot *out = psSphereRotCombine(NULL, toRot, fromConj); + psFree(from); + psFree(to); + psFree(fromEP); + psFree(fromCorr); + psFree(fromRot); + psFree(toEP); + psFree(toCorr); + psFree(toRot); + psFree(fromConj); + return out; + } else { //mode == PS_PRECESS_COMPLETE_B + //For PS_PRECESS_COMPLETE_B the same procedure as IAU2000A is used but with + //additional earthpole corrections from psEOC_PrecessionCorr. The corrections + //for COMPLETE_B come from the IERS Bulletin B. + + //Calculate the earthpoles and quaternions corresponding to each time (from, to). + //Add in the precession corrections from IERS bulletin B. + //Combine the quaternions to produce the output psSphereRot. + psEarthPole *fromEP = psEOC_PrecessionModel(from); + psEarthPole *fromCorr = psEOC_PrecessionCorr(from, PS_IERS_B); + fromEP->x += fromCorr->x; + fromEP->y += fromCorr->y; + psSphereRot *fromRot = psSphereRot_CEOtoGCRS(fromEP); + psEarthPole *toEP = psEOC_PrecessionModel(to); + psEarthPole *toCorr = psEOC_PrecessionCorr(to, PS_IERS_B); + toEP->x += toCorr->x; + toEP->y += toCorr->y; + psSphereRot *toRot = psSphereRot_CEOtoGCRS(toEP); + psSphereRot *fromConj = psSphereRotConjugate(NULL, fromRot); + psSphereRot *out = psSphereRotCombine(NULL, toRot, fromConj); + psFree(from); + psFree(to); + psFree(fromEP); + psFree(fromCorr); + psFree(fromRot); + psFree(toEP); + psFree(toCorr); + psFree(toRot); + psFree(fromConj); + return out; + } +} Index: /branches/rel-1-1/psLib/src/astro/psEarthOrientation.h =================================================================== --- /branches/rel-1-1/psLib/src/astro/psEarthOrientation.h (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psEarthOrientation.h (revision 12167) @@ -0,0 +1,201 @@ +/** @file psEarthOrientation.h +* +* @brief earth orientation calculations and transformation +* +* @author Josh Hoblitt, IfA +* @author Ed Pier, IfA +* @author Eugene Magnier, IfA +* @author Robert Daniel DeSonia, MHPCC +* +* @version $Revision: 1.17 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-23 22:47:22 $ +* +* Copyright 2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PS_EARTH_ORIENTATION +#define PS_EARTH_ORIENTATION + +/// @addtogroup Astro Astronomy +/// @{ + +#include "psCoord.h" +#include "psTime.h" +#include "psSphereOps.h" + +/** Structure for respresenting the Earth's pole at any moment or determine velocity + * at the pole. This structure carries the polar coordinate information. */ +typedef struct +{ + double x; ///< X component of the earth's pole + double y; ///< Y component of the earth's pole + double s; ///< s component of the earth's pole +} +psEarthPole; + +/** Method for spherical precession used to specify the level of detail used in + * calculation. + * + * @see psSpherePrecess + * + */ +typedef enum { + PS_PRECESS_ROUGH, ///< roughest, lowest level of detail + PS_PRECESS_COMPLETE_A, ///< complete level of detail using IERS A + PS_PRECESS_COMPLETE_B, ///< complete level of detail using IERS B + PS_PRECESS_IAU2000A ///< highest level of detail +} +psPrecessMethod; + +/** Initialize EOC. + * + * Parses IERS table data and creates the polynomials used by certain EOC functions. + * + * @return bool: True if successful, otherwise false. + */ +bool p_psEOCInit(void); + +/** Finalize EOC after using functions that make calls to eocInit for time table data + * + * @return bool: True if successful, otherwise false. + */ +bool p_psEOCFinalize(void); + +/** Allocates a new psEarthPole structure. */ +psEarthPole *psEarthPoleAlloc(void); + +/** Calculates the apparent position of a star, given its actual position and the + * velocity vector of the observer. + * + * The actual and apparent positions are represented as psSphere entries, as is the + * direction of motion. The speed in that direction is given in units of the speed + * of light. If the value of apparent is NULL, a new psSphere is allocated, otherwise + * the point to apparent is used for the result. + * + * @return psSphere*: the actual position of a star. + */ +psSphere *psAberration( + psSphere *apparent, ///< apparent position of star + const psSphere *actual, ///< actual position of star + const psSphere *direction, ///< direction of motion of observer + double speed ///< speed of motion of observer +); + +/** Calculates the apparent position of a star, given its actual position and the + * position of the sun. + * + * The actual and apparent positions are represented as psSphere entries, as is + * position of the sun. If the value of apparent is NULL, a new psSphere is allocated, + * otherwise the point to apparent is used for the result. + * + * @return psSphere*: the apparent position of a star. + */ +psSphere *psGravityDeflection( + psSphere *apparent, ///< apparent position of star + psSphere *actual, ///< actual position of star + psSphere *sun ///< position of the sun +); + +/** Calculates the components of the rotation between the CEO and GCRS frames, X, Y, + * and s, using the IAU2000A precession & nutation model. + * + * The input time may be represented in any format other than UT1. This routine must + * give results identical to the IERS XYS2000A subroutine. + * + * @return psEarthPole*: the calculated components of the rotation. + */ +psEarthPole *psEOC_PrecessionModel( + const psTime *time ///< specified time +); + +/** Provides interpolated corrections to the X and Y components of the polar + * coordinates from the tables provided by the IERS, just as it does for UT1 and + * polar motion. + * + * @return psEarthPole*: interpolated corrections to the precession components. + */ +psEarthPole *psEOC_PrecessionCorr( + const psTime *time, ///< specified time + psTimeBulletin bulletin ///< IERS tables for polar coordinate components. +); + +/** Constructs the spherical rotation for transforming from CEO to GCRS coordinates. + * + * The resulting psSphereRot may be used to determine the rotation from CIP/CEO to + * GCRS. This function must give results identical to the IERS BPN2000. + * + * @return psSphereRot*: spherical rotation for CEO to GCRS transformation. + */ +psSphereRot *psSphereRot_CEOtoGCRS( + const psEarthPole *pole ///< input coordinates to transform +); + +/** Calculates the rotation of the Earth about the CIP. + * + * If tidalCorr is non-NULL, use the S-component to provide tidal corrections to the + * UT1 time. If tidalCorr is NULL, no corrections are made & this step is skipped. + * + * @return psSphereRot*: spherical rotation of the Earth about the CIP. + */ +psSphereRot *psSphereRot_TEOtoCEO( + const psTime *time, ///< specified time + psEarthPole *tidalCorr ///< UT1 polar tide correction or NULL +); + +/** Provides interpolated values of the polar motion components extracted from the + * IERS tables. + * + * @return psEarthPole*: interpolated polar motion components. + */ +psEarthPole *psEOC_GetPolarMotion( + const psTime *time, ///< specified time + psTimeBulletin bulletin ///< IERS tables for polar coordinate components. +); + +/** Provides tidal corrections to the polar motion components using the Ray model + * of Simon et al. + * + * @return psEarthPole*: corrected polar motion components. + */ +psEarthPole *psEOC_PolarTideCorr( + const psTime *time ///< specified time +); + +/** Provides the additional corrections due to nutation terms with periods less than + * or equal to two days, as well as the correction to the s-prime component of polar + * motion. + * + * @return psEarthPole*: corrected polar motion components. + */ +psEarthPole *psEOC_NutationCorr( + psTime *time ///< specified time +); + +/** Converts the polar motion corrections to a spherical rotation. + * + * This function should give identical results to the IERS POM2000 subroutine. + * + * @return psSphereRot*: ITRS to TEO sphere rotation. + */ +psSphereRot *psSphereRot_ITRStoTEO( + const psEarthPole *motion ///< corrected polar motion components +); + +/** Generates the complete spherical rotation to account for precession + * between two times. The equinoxes shall be Julian equinoxes. + * + * If NULL is provided for either time, it is assumed to have the reference + * equinox value of J2000. The mode argument is used to specify the level of + * detail used in the calculation. + * + * @return psSphere*: the resulting spherical rotation + */ +psSphereRot* psSpherePrecess( + const psTime *fromTime, ///< equinox of coords input + const psTime *toTime, ///< equinox of coords output + psPrecessMethod mode ///< level of detail to use +); + + +/// @} +#endif // #ifndef PS_EARTH_ORIENTATION Index: /branches/rel-1-1/psLib/src/astro/psSphereOps.c =================================================================== --- /branches/rel-1-1/psLib/src/astro/psSphereOps.c (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psSphereOps.c (revision 12167) @@ -0,0 +1,473 @@ +/** @file psSphereOps.c + * + * @brief Contains spherical rotation and offset operations + * + * @ingroup CoordinateTransform + * + * @author Robert DeSonia, MHPCC + * @author Dave Robbins, MHPCC + * + * @version $Revision: 1.19 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psSphereOps.h" +#include "psType.h" +#include "psCoord.h" +#include "psMemory.h" +#include "psTime.h" +#include "psAssert.h" +#include "psError.h" +#include "psLogMsg.h" + + + +// Modified Julian Day 01/01/1900 00:00:00 +#define MJD_1900 15021.0 + +// Days in Julian century +#define JULIAN_CENTURY 36525.0 + +static void sphereRotFree(psSphereRot *result) +{ + // There are non dynamic allocated items +} + +static psSphereRot* sphereRotAlloc(void) +{ + psSphereRot *sphereRot = (psSphereRot* ) psAlloc(sizeof(psSphereRot)); + psMemSetDeallocator(sphereRot, (psFreeFunc)sphereRotFree); + return (sphereRot); +} + +psSphereRot* psSphereRotAlloc(double alphaP, + double deltaP, + double phiP) +{ + if (isnan(alphaP) || isnan(deltaP) || isnan(phiP) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Input angles cannot be NaN in psSphereRotAlloc."); + return NULL; + } + psSphereRot *r = sphereRotAlloc(); + psSphereRot *s = sphereRotAlloc(); + psSphereRot *t = sphereRotAlloc(); + + //The following represents: r =a rotation about the z-axis by alphaP, s =a rotation about + // the y-axis by deltaP, and t =a rotation about the z-axis by phiP. + r->q0=0; + r->q1=0; + r->q2=sin(alphaP/2.0); + r->q3=cos(alphaP/2.0); + + s->q0=0; + s->q1=sin(deltaP/2.0); + s->q2=0; + s->q3=cos(deltaP/2.0); + + t->q0=0; + t->q1=0; + t->q2=sin(phiP/2.0); + t->q3=cos(phiP/2.0); + + // calculate t*s*r. + psSphereRot* temp = psSphereRotCombine(NULL,t,s); + psSphereRot* result = psSphereRotCombine(NULL, temp, r); + psFree(temp); + psFree(r); + psFree(s); + psFree(t); + return result; +} + +bool psMemCheckSphereRot(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + //See if the ptr corresponds to a psSphereRot* + return ( psMemGetDeallocator(ptr) == (psFreeFunc)sphereRotFree ); +} + +//This function is really a second allocate function for psSphereRot's that uses quaternion +// component inputs instead of angle inputs as in psSphereRotAlloc. +psSphereRot* psSphereRotQuat(double q0, + double q1, + double q2, + double q3) +{ + if (isnan(q0) || isnan(q1) || isnan(q2) || isnan(q3) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Input quaternions cannot be NaN in psSphereRotQuat."); + return NULL; + } + //allocate space for a new sphere rotation and set deallocator + psSphereRot* rot = sphereRotAlloc(); + + //The magnitude of a rotation quaternion should = 1 so we normalize here in case the + // inputs have not been. + double len = sqrt(q0*q0 + q1*q1 + q2*q2 + q3*q3); + rot->q0 = q0 / len; + rot->q1 = q1 / len; + rot->q2 = q2 / len; + rot->q3 = q3 / len; + + return rot; +} + +psSphereRot* psSphereRotConjugate(psSphereRot *out, + const psSphereRot *in) +{ + //if input sphere rotation is NULL, return NULL + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psSphereRot input cannot be NULL.\n"); + return NULL; + } + //if output sphere rotation is NULL, allocate a new sphere rotation to return + if (out == NULL) { + out = sphereRotAlloc(); + } + //Since q3 is the magnitude and q0,q1,q2 are direction, the conjugate rotation + // is formed by -q0,-q1,-q2,+q3. Note that this is the same as q0,q1,q2,-q3. + out->q0 = -in->q0; + out->q1 = -in->q1; + out->q2 = -in->q2; + out->q3 = in->q3; + + return out; +} + +psSphere* psSphereRotApply(psSphere* out, + const psSphereRot* transform, + const psSphere* coord) +{ + //Make sure that input coordinates and rotation are not NULL + PS_ASSERT_PTR_NON_NULL(transform, NULL); + PS_ASSERT_PTR_NON_NULL(coord, NULL); + //If output coordinates is NULL allocate a new psSphere + if (out == NULL) { + out = psSphereAlloc(); + } + //apply the transform by creating a new psSphereRot from the input coord + // and combining it with the input transform (see ADD) + double cosD = cos(coord->d); + psSphereRot* coordQuat = psSphereRotQuat( + cosD*cos(coord->r), + cosD*sin(coord->r), + sin(coord->d), + 0.0); + //Get the conjugate of the input rotation. Need to calculate r*p*R to apply rotation + // where R = r-conjugate. + psSphereRot *conjugate = psSphereRotConjugate(NULL, transform); + psSphereRot *temp = psSphereRotCombine(NULL, transform, coordQuat); + psSphereRot *result = psSphereRotCombine(NULL, temp, conjugate); + //From ADD we can find the new sphere coordinates, + // r is calculated as tan^-1 (q1/q0), d is sin^-1 (q2) + out->r = atan2(result->q1, result->q0); + out->d = asin(result->q2); + out->rErr = 0.0; + out->dErr = 0.0; + //Simply for convention, we make sure all output r-parameters are positive in the range + // of 0 to 2pi + if (out->r < -0.000001) { + out->r += 2.0 * M_PI; + } + + psFree(conjugate); + psFree(temp); + psFree(result); + psFree(coordQuat); + return out; +} + +psSphereRot* psSphereRotCombine(psSphereRot* out, + const psSphereRot* rot1, + const psSphereRot* rot2) +{ + //Make sure that input rotations are not NULL + PS_ASSERT_PTR_NON_NULL(rot1, NULL); + PS_ASSERT_PTR_NON_NULL(rot2, NULL); + //If output rotation is NULL, allocate a new psSphereRot to return + if (out == NULL) { + out = sphereRotAlloc(); + } + + double a0 = rot1->q0; + double a1 = rot1->q1; + double a2 = rot1->q2; + double a3 = rot1->q3; + double b0 = rot2->q0; + double b1 = rot2->q1; + double b2 = rot2->q2; + double b3 = rot2->q3; + + //Combine rot1 & rot2. Formulas here came from ADD. + out->q0 = a3*b0 + a0*b3 + a1*b2 - a2*b1; + out->q1 = a3*b1 - a0*b2 + a1*b3 + a2*b0; + out->q2 = a3*b2 + a0*b1 - a1*b0 + a2*b3; + out->q3 = b3*a3 - b2*a2 - b1*a1 - b0*a0; + + return out; +} + +psSphereRot *psSphereRotInvert(double alphaP, + double deltaP, + double phiP) +{ + //This function should produce identical results to psSphereRotConjugate in most + // or possibly all situations. Creates the inverse rotation from the input angles. + return (psSphereRotAlloc(-phiP, -deltaP, -alphaP)); +} + +psSphereRot* psSphereRotEclipticToICRS(const psTime *time) +{ + psF64 T; + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time, NULL); + // Convert psTime to MJD + psF64 MJD = psTimeToMJD(time); + // Check the specified MJD is greater than 1900 + if ( MJD < MJD_1900 ) { + psError(PS_ERR_BAD_PARAMETER_TYPE,true,_("Specified time is less than 1900.")); + return NULL; + } + // Calculate number of Julian centuries since 1900 + T = ( MJD - MJD_1900 ) / JULIAN_CENTURY; + //Formulas for phiP, deltaP, alphaP came from ADD. + psF64 phiP = - DEG_TO_RAD(270.0); + psF64 deltaP = - (DEG_TO_RAD(23.0) + + MIN_TO_RAD(27.0) + + SEC_TO_RAD(8.26) - + (SEC_TO_RAD(46.845) * T) - + (SEC_TO_RAD(0.0059) * T * T) + + (SEC_TO_RAD(0.00181) * T * T * T)); + psF64 alphaP = - DEG_TO_RAD(90.0); + + return (psSphereRotAlloc(alphaP, deltaP, phiP)); +} + +psSphereRot* psSphereRotICRSToEcliptic(const psTime *time) +{ + psF64 T; + // Check for null parameter + PS_ASSERT_PTR_NON_NULL(time, NULL); + // Convert psTime to MJD + psF64 MJD = psTimeToMJD(time); + // Check the specified MJD is greater than 1900 + if ( MJD < MJD_1900 ) { + psError(PS_ERR_BAD_PARAMETER_TYPE,true,_("Specified time is less than 1900.")); + return NULL; + } + // Calculate number of Julian centuries since 1900 + T = ( MJD - MJD_1900 ) / JULIAN_CENTURY; + + //Formulas for phiP, deltaP, alphaP came from ADD. Notice that the formulas are the + // same as for EclipticToICRS except that alpha=-phiP, deltaP=-deltaP, phiP=-alphaP to + // produce the inverse rotation as in psSphereRotInverse. + psF64 alphaP = DEG_TO_RAD(270.0); + psF64 deltaP = DEG_TO_RAD(23.0) + + MIN_TO_RAD(27.0) + + SEC_TO_RAD(8.26) - + (SEC_TO_RAD(46.845) * T) - + (SEC_TO_RAD(0.0059) * T * T) + + (SEC_TO_RAD(0.00181) * T * T * T); + psF64 phiP = DEG_TO_RAD(90.0); + + return (psSphereRotAlloc(alphaP, deltaP, phiP)); +} + +psSphereRot* psSphereRotGalacticToICRS(void) +{ + //Formulas for alphaP, deltaP, phiP came from the ADD for ICRSToGalactic. Notice that + // this is the reason the inverse gets allocated and returned here. + psF64 alphaP = DEG_TO_RAD(180.0-192.85948); + psF64 deltaP = DEG_TO_RAD(90.0 - 27.12825); + psF64 phiP = DEG_TO_RAD(90.0+32.93192); + return (psSphereRotAlloc(-phiP,-deltaP,-alphaP)); +} + +psSphereRot* psSphereRotICRSToGalactic(void) +{ + //Formulas for alphaP, deltaP, phiP came from ADD. + psF64 alphaP = DEG_TO_RAD(180.0-192.85948); + psF64 deltaP = DEG_TO_RAD(90.0 - 27.12825); + psF64 phiP = DEG_TO_RAD(90.0+32.93192); + + return (psSphereRotAlloc(alphaP, deltaP, phiP)); +} + +//Calculates the difference between coordinates in position1 & 2 and returns this offset. +psSphere* psSphereGetOffset(const psSphere* position1, + const psSphere* position2, + psSphereOffsetMode mode, + psSphereOffsetUnit unit) +{ + //Make sure that input coordinates are not NULL & that mode & unit are valid + PS_ASSERT_PTR_NON_NULL(position1, NULL); + PS_ASSERT_PTR_NON_NULL(position2, NULL); + // Check positions near 90 degree and issue warnings if necessary + if (position1->d >= DEG_TO_RAD(90.0)) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: psDeproject(): position1->d is larger than 90 degrees. Returning NULL."); + return NULL; + } + if (position2->d >= DEG_TO_RAD(90.0)) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: psDeproject(): position2->d is larger than 90 degrees. Returning NULL."); + return NULL; + } + // Allocate return structure + psSphere* tmp = psSphereAlloc(); + + // Mode is LINEAR - Use first position as projection center and project second point + // onto tangent plane, set point projected into psSphere structure x->r y->d + if (mode == PS_LINEAR) { + //The basic idea is to project both positions onto the linear plane, with position1 + // at the center, then calculate the linear offset between those projections. + psProjection* proj = psProjectionAlloc(position1->r, + position1->d, + 1.0, + 1.0, + PS_PROJ_TAN); + // Perform projection onto tangent plane + psPlane* lin = psProject(NULL, position2, proj); + // Set return values + tmp->r = lin->x; + tmp->d = lin->y; + // Free data structures allocated + psFree(proj); + psFree(lin); + + // Mode is SPHERICAL - Get difference between positiion 1 and position 2 and convert + // offset value from radians to desired units and return + } else if (mode == PS_SPHERICAL) { + tmp->r = position2->r - position1->r; + tmp->d = position2->d - position1->d; + + // Wrap these to an acceptable range. This assumes that all + // angles are in radians. + tmp->r = fmod(tmp->r, 2*M_PI); + tmp->d = fmod(tmp->d, 2*M_PI); + tmp->rErr = 0.0; + tmp->dErr = 0.0; + + // Convert output to desired units + if (unit == PS_ARCSEC) { + tmp->r = RAD_TO_SEC(tmp->r); + tmp->d = RAD_TO_SEC(tmp->d); + } else if (unit == PS_ARCMIN) { + tmp->r = RAD_TO_MIN(tmp->r); + tmp->d = RAD_TO_MIN(tmp->d); + } else if (unit == PS_DEGREE) { + tmp->r = RAD_TO_DEG(tmp->r); + tmp->d = RAD_TO_DEG(tmp->d); + } else if (unit == PS_RADIAN) {} + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified units, 0x%x, is not supported."), + unit); + psFree(tmp); + return NULL; + } + + // Invalid mode + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified offset mode, 0x%x, is not supported."), + mode); + psFree(tmp); + return NULL; + } + + // Return value + return tmp; +} + +//Applies the specified offset to the input position coordinates and returns the new position. +psSphere* psSphereSetOffset(const psSphere* position, + const psSphere* offset, + psSphereOffsetMode mode, + psSphereOffsetUnit unit) +{ + //Make sure that input coordinates are not NULL & that mode & unit are valid + PS_ASSERT_PTR_NON_NULL(position, NULL); + PS_ASSERT_PTR_NON_NULL(offset, NULL); + + psSphere* tmp; + psF64 tmpR = 0.0; + psF64 tmpD = 0.0; + + // If mode is linear then set position to projection center + // and offset to linear coordinate then deproject to obtain + // new sphere coordinate + if (mode == PS_LINEAR) { + // Allocate plane coordinate and set coordinate + psPlane* lin = psPlaneAlloc(); + lin->x = offset->r; + lin->y = offset->d; + // Allocate and set projection structure + psProjection* proj = psProjectionAlloc(position->r, + position->d, + 1.0, + 1.0, + PS_PROJ_TAN); + // Project tangent plane coord to spherical coord + tmp = psDeproject(NULL, lin, proj); + // Free data structures used + psFree(proj); + psFree(lin); + + // If mode is spherical then convert offset to radians, add the offset + // to the position and wrap to 0 to 2pi + } else if (mode == PS_SPHERICAL) { + // Convert offset unit to radians + if (unit == PS_ARCSEC) { + tmpR = SEC_TO_RAD(offset->r); + tmpD = SEC_TO_RAD(offset->d); + } else if (unit == PS_ARCMIN) { + tmpR = MIN_TO_RAD(offset->r); + tmpD = MIN_TO_RAD(offset->d); + } else if (unit == PS_DEGREE) { + tmpR = DEG_TO_RAD(offset->r); + tmpD = DEG_TO_RAD(offset->d); + } else if (unit == PS_RADIAN) { + tmpR = offset->r; + tmpD = offset->d; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified units, 0x%x, is not supported."), + unit); + return NULL; + } + + // Allocate sphere structure to return + tmp = psSphereAlloc(); + + // Add offset and wrap to 0 to 2PI if necessary + tmp->r = position->r + tmpR; + tmp->r = fmod(tmp->r, 2.0*M_PI); + tmp->d = position->d + tmpD; + tmp->d = fmod(tmp->d, 2.0*M_PI); + tmp->rErr = 0.0; + tmp->dErr = 0.0; + + // Invalid mode report error + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified offset mode, 0x%x, is not supported."), + mode); + return NULL; + } + + return tmp; +} + + Index: /branches/rel-1-1/psLib/src/astro/psSphereOps.h =================================================================== --- /branches/rel-1-1/psLib/src/astro/psSphereOps.h (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psSphereOps.h (revision 12167) @@ -0,0 +1,217 @@ +/** @file psSphereOps.h + * + * @brief Contains spherical rotation and offset operations + * + * @author Robert DeSonia, MHPCC + * @author David Robbins, MHPCC + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:22 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_SPHERE_H +#define PS_SPHERE_H + +/// @addtogroup Astro Astronomy +/// @{ + +# include "psTime.h" + +/** Spherical Rotation Definition + * + * We need to be able to convert between ICRS, Galactic and Ecliptic + * coordinates, and potentially between arbitrary spherical coordinate + * systems. All of these basic spherical transformations represent rotations + * of the spherical coordinate reference. + * + */ +typedef struct +{ + double q0; + double q1; + double q2; + double q3; +} +psSphereRot; + +/** Mode for Offset calculation between two sky positions + * + * @see psSphereGetOffset, psSphereSetOffset + * + */ +typedef enum { + PS_SPHERICAL, ///< offset corresponds to an angular offset + PS_LINEAR ///< offset corresponds to a linear offset +} psSphereOffsetMode; + +/** The units of the offset + * + * @see psSphereGetOffset, psSphereSetOffset + * + */ +typedef enum { + PS_ARCSEC, ///< Arcseconds + PS_ARCMIN, ///< Arcminutes + PS_DEGREE, ///< Degrees + PS_RADIAN ///< Radians +} psSphereOffsetUnit; + + +/** Allocator for psSphereRot + * + * @return psSphereRot* newly allocated psSphereRot + */ + +psSphereRot* psSphereRotAlloc( + double alphaP, ///< north pole latitude + double deltaP, ///< north pole longitude + double phiP ///< defines the longitude in the input system of the equatorial intersection between the two systems (e.g, the first point of Ares). +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psSphereRot structure, false otherwise. + */ +bool psMemCheckSphereRot( + psPtr ptr ///< the pointer whose type to check +); + + +/** Allocator for psSphereRot given quaternions. + * + * Normalizes a given quaternion and returns the cooresponding newly allocated + * psSphereRot object. + * + * @return psSphereRot* newly allocated psSphereRot + */ +psSphereRot* psSphereRotQuat( + double q0, ///< q0 + double q1, ///< q1 + double q2, ///< q2 + double q3 ///< q3 +); + +/** Applies the psSphereTransform transform for a specified coordinate + * + * @return psSphere* resulting coordinate based on transform + */ +psSphere* psSphereRotApply( + psSphere* out, ///< a psSphere to recycle. If NULL, a new one is generated. + const psSphereRot* transform, ///< the transform to apply + const psSphere* coord ///< the coordinate to apply the transform above.x +); + +/** Combines two rotations. + * + * Combines two rotations to produce a single rotation which is the + * equivalent of applying the ï¬rst rotation and then the second. The output + * rotation may be supplied, or will be allocated if NULL. + * + * @return psSphereRot* New psSphereRot that is the combination of the input psSphereRots + */ +psSphereRot* psSphereRotCombine( + psSphereRot* out, ///< a psSphereRot to recycle or NULL + const psSphereRot* rot1, ///< first rotation to combine + const psSphereRot* rot2 ///< second rotation to combine +); + +/** Returns the conjugate of a specified rotation. + * + * Stores the conjugate of a specified rotation in an existing psSphereRot* or creates a + * new psSphereRot* if NULL. The conjugate of a rotation given in quaternions is -q0, + * -q1, -q2, q3. + * + * @return psSphereRot* the Conjugate of the specified psSphereRot, in. + */ +psSphereRot* psSphereRotConjugate( + psSphereRot *out, ///< a psSphereRot to recycle or NULL + const psSphereRot *in ///< the psSphereRot from which to obtain the conjugate +); + +/** Inverts the rotation. + * + * A given rotation is inverted by creating a psSphereRot using -phiP, -deltaP, -alphaP. + * + * @return psSphereRot* Inverted input psSphereRot + */ +psSphereRot* psSphereRotInvert( + double alphaP, ///< north pole latitude + double deltaP, ///< north pole longitude + double phiP ///< defines the longitude in the input system of the equatorial intersection between the two systems (e.g, the first point of Ares). +); + +/** Determines the offset (RA,Dec) on the sky between two positions. + * + * Both an offset mode and an offset unit may be defined. The mode may be + * either PS_SPHERICAL, in which case the specified offset corresponds to an + * offset in angles, or it may be PS_LINEAR, in which case the offset + * corresponds to a linear offset in a local projection. The offset unit may + * be in one of PS_ARCSEC, PS_ARCMIN, PS_DEGREE, and PS_RADIAN, which + * specifies the units of the offset only. + * + * @return psSphere* the offset between position1 and position2 + */ +psSphere* psSphereGetOffset( + const psSphere* position1, ///< first position for calculating offset + const psSphere* position2, ///< second position for calculating offset + psSphereOffsetMode mode, ///< type of offset can be PS_SPHERICAL or PS_LINEAR + psSphereOffsetUnit unit ///< specifies the units of offset only +); + +/** Applies the given offset to a coordinate. + * + * Both an offset mode and an offset unit may be defined. The mode may be + * either PS_SPHERICAL, in which case the specified offset corresponds to an + * offset in angles, or it may be PS_LINEAR, in which case the offset + * corresponds to a linear offset in a local projection. The offset unit may + * be in one of PS_ARCSEC, PS_ARCMIN, PS_DEGREE, and PS_RADIAN, which + * specifies the units of the offset only. + * + * @return psSphere* the original position with the given offset applied. + */ +psSphere* psSphereSetOffset( + const psSphere* position, ///< coordinate of origin + const psSphere* offset, ///< coordinate of offset to apply + psSphereOffsetMode mode, ///< corresponds to an offset in angles or local projection + psSphereOffsetUnit unit ///< specifies the units of offset only +); + +/** Creates the appropriate transform for converting from ICRS to Ecliptic + * coordinate systems. + * + * @return psSphereRot* transform for ICRS->Ecliptic coordinate systems + */ +psSphereRot* psSphereRotICRSToEcliptic( + const psTime *time ///< the time for which the resulting transform will be valid +); + +/** Creates the appropriate transform for converting from Ecliptic to ICRS + * coordinate systems. + * + * @return psSphereRot* transform for Ecliptic->ICRS coordinate systems + */ +psSphereRot* psSphereRotEclipticToICRS( + const psTime *time ///< the time for which the resulting transform will be valid +); + +/** Creates the appropriate transform for converting from ICRS to Galactic + * coordinate systems. + * + * @return psSphereRot* new sphere rotation for ICRS to Galactic transformations. + */ +psSphereRot* psSphereRotICRSToGalactic(void); + +/** Creates the appropriate transform for converting from Galactic to ICRS + * coordinate systems. + * + * @return psSphereRot* new sphere rotation for Galactic to ICRS transformations. + */ +psSphereRot* psSphereRotGalacticToICRS(void); + +/// @} + +#endif // #ifndef PS_SPHERE_H Index: /branches/rel-1-1/psLib/src/astro/psTime.c =================================================================== --- /branches/rel-1-1/psLib/src/astro/psTime.c (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psTime.c (revision 12167) @@ -0,0 +1,1886 @@ +/** @file psTime.c + * + * @brief Definitions for time, time utilities, and conversion functions for use with psLib astronomy + * functions. + * + * A collection of functions are required by psLib to manipulate time data. These functions primarily consist + * of conversions between specific time formats. They use the UNIX timeval time system as the + * base upon which International Atomic Time (TAI) and Universal Time Coordinated (UTC) are calculated. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.110 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include + +#include "psTime.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psMemory.h" +#include "psAbort.h" +#include "psImage.h" +#include "psString.h" +#include "psMetadata.h" +#include "psMetadataConfig.h" +#include "psLookupTable.h" +#include "psAssert.h" + +#define MAX_STRING_LENGTH 256 + +/** Sidereal angular conversion from seconds to radians for GMST in seconds (i.e. pi/(180*240)) */ +#define S2R (7.272205216643039903848711535369e-5) + +/** Two times pi with double precision accuracy */ +#define TWOPI (2.0*M_PI) + +/** Conversion from radians to degrees */ +#define R2DEG = (180.0/M_PI) + + /** Maximum length of time string */ + #define MAX_TIME_STRING_LENGTH 256 + + /** Seconds per minute */ + #define SEC_PER_MINUTE 60.0 + + /** Seconds per hour */ + #define SEC_PER_HOUR (60.0*SEC_PER_MINUTE) + + /** Seconds per day */ + #define SEC_PER_DAY (24.0*SEC_PER_HOUR) + + /** Seconds per year */ + #define SEC_PER_YEAR (365.0*SEC_PER_DAY) + + /** Microseconds per day */ + #define NSEC_PER_DAY 86400000000000.0 + + /** Time metadata read from config file */ + static psMetadata *timeMetadata = NULL; + +// Offset to convert terrestrial time(TT) to international atomic time(TAI) +#define TAI_TT_OFFSET_SECONDS 32 +#define TAI_TT_OFFSET_NANOSECONDS 184000000 + +// Offset from converting to MJD +#define MJD_EPOCH_OFFSET 40587.0 + +// Offset for converting to JD +#define JD_EPOCH_OFFSET 2440587.5 + +// Offset of year 0000 from epoch +#define YEAR_0000_SEC -62125920000 + +// Offset of year 9999 from epoch +#define YEAR_9999_SEC 253202544000 + +/** Static function prototypes */ +static char *cleanString(char *inString, int sLen); +static char* getToken(char **inString, char *delimiter, psParseErrorType *status); +static psTime* convertTimeTAIUTC(psTime* time); +static psTime* convertTimeUTCTAI(psTime* time); +static psTime* convertTimeTAITT(psTime* time); +static psTime* convertTimeTTTAI(psTime* time); +static psTime* convertTimeUTCUT1(psTime* time); + + +/** Removes leading and trailing whitespace and # characters from a string. The cleaned string is a new null + * terminated copy of the original input string. */ +static char *cleanString(char *inString, + int sLen) +{ + char *ptrB = NULL; + char *ptrE = NULL; + char *cleaned = NULL; + + ptrB = inString; + + // Skip over leading # or whitespace + while (isspace(*ptrB) || *ptrB=='#') { + ptrB++; + } + + // Skip over trailing whitespace, null terminators, and # characters + ptrE = inString + sLen - 1; + while(isspace(*ptrE) || *ptrE=='\0' || *ptrE=='#') { + ptrE--; + } + + // Length, sLen, does not include '\0' + sLen = ptrE - ptrB + 1; + + // Adds '\0' to end of string and +1 to sLen + cleaned = psStringNCopy(ptrB, sLen); + + return cleaned; +} + +/** Returns cleaned token based on delimiter, but not including delimiter. Also changes the pointer location + * the beginning of the string. Tokens are newly allocated null terminated strings. */ +static char* getToken(char **inString, + char *delimiter, + psParseErrorType *status) +{ + char *cleanToken = NULL; + int sLen = 0; + + // Skip over leading whitespace + while(isspace(**inString)) { + (*inString)++; + } + + // Length of token, not including delimiter + sLen = strcspn(*inString, delimiter); + + if(sLen) { + + // Create new, cleaned, and null terminated token + cleanToken = cleanString(*inString, sLen); + + // Move to end of token + // (*inString) += (sLen+1); + (*inString) += sLen; + if (**inString != '\0' ) { + (*inString)++; + } + + } else if(**inString!='\0' && sLen==0) { + *status = PS_PARSE_ERROR_GENERAL; + } + + return cleanToken; +} + +// get the pslib.config filename by checking environment variable first, then original installation area. +const char* p_psTimeConfigFileName() +{ + const char* filename = getenv("PS_CONFIG_FILE"); + + if (filename == NULL) { // environment variable not found + filename = PS_CONFIG_FILE_DEFAULT; // this should come from configure.ac + } + + return filename; +} + + +// Searches time tables in priority order and performs interpolation if input index value is within a table. +// If the index value is out of range, the status is set accordingly. +psF64 p_psTimeSearchTables(psF64 index, + psU64 column, + char *metadataTableNames[], + psU32 nTables, + psLookupStatusType* status) +{ + char* tableName = NULL; + psF64 result = NAN; + psLookupTable* table = NULL; + psMetadataItem* tableMetadataItem = NULL; + + // Check if psTime tables are already loaded + if(!p_psTimeInit(p_psTimeConfigFileName())) { + *status = PS_LOOKUP_ERROR; + return NAN; + } + + // Search each table in priority order: daily, eopc,finals + for(psS32 i = 0; i < nTables; i++) { + + // Get table name from list of tables to search + tableName = metadataTableNames[i]; + + // Lookup table name in time metadata + tableMetadataItem = psMetadataLookup(timeMetadata, tableName); + + // Check if table not a metadata item + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + tableName); + *status = PS_LOOKUP_ERROR; + return NAN; + } + + // Get table from metadata + table = (psLookupTable*)tableMetadataItem->data.V; + + // Check that table is not NULL + PS_ASSERT_PTR_NON_NULL(table,NAN); + + // Check if index within to/from range + if(index >= table->validFrom ) { + if(index <= table->validTo) { + // Attempt to interpolate table + result = psLookupTableInterpolate(table, index, column); + *status = PS_LOOKUP_SUCCESS; + if(!isnan(result)) { + break; + } + } else { + *status = PS_LOOKUP_PAST_BOTTOM; + } + } else { + *status = PS_LOOKUP_PAST_TOP; + } + } + + return result; +} + +bool p_psTimeInit(const char *fileName) +{ + psS32 numLines = 0; + bool foundTable = false; + char *tableDir = NULL; + char *tableNames = NULL; + char *tableFormats = NULL; + char *namesPtr = NULL; + char *formatPtr = NULL; + char *metadataNamesPtr = NULL; + char *tableName = NULL; + char *tableFormat = NULL; + char *fullTableName = NULL; + psS32 i = 0; + psS32 j = 0; + psS32 numTables = 0; + psU32 nFail = 0; + psVector *tablesFrom = NULL; + psVector *tablesTo = NULL; + psVector *tablesIndex = NULL; + psMetadataItem *metadataItem = NULL; + psLookupTable *table = NULL; + psParseErrorType status = PS_PARSE_SUCCESS; + char metadataTableNames[4][MAX_STRING_LENGTH] = {"daily", "eopc", "finals", "tai"}; + + // Check if the p_psTimeInit has already been ran + if (timeMetadata != NULL) { + return true; + } + + const bool initialPersistence = + p_psMemAllocatePersistent(true); // All memory allocated below is "persistent" + + // Read config file + timeMetadata = psMetadataConfigRead(timeMetadata, &nFail, fileName, true); + if(timeMetadata == NULL) { + return false; + } else if(nFail != 0) { + return false; + } + + // Get number of tables + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.n"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.n"); + return false; + } + numTables = (psS32)metadataItem->data.S32; + + // Get lower range of tables + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.from"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.from"); + return false; + } + tablesFrom = psVectorCopy(tablesFrom, metadataItem->data.V, PS_TYPE_F64); + if(tablesFrom->n != numTables) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Incorrect vector size. Size: %ld, Expected %d."), tablesFrom->n, numTables); + psFree(tablesFrom); + return false; + } + + // Get upper range of tables + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.to"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.to"); + psFree(tablesFrom); + return false; + } + tablesTo = psVectorCopy(tablesTo, metadataItem->data.V, PS_TYPE_F64); + if(tablesTo->n != numTables) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Incorrect vector size. Size: %ld, Expected %d."), tablesTo->n, numTables); + psFree(tablesFrom); + psFree(tablesTo); + return false; + } + + // Get index columns for the tables + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.index"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE,true,_("Failed find '%s' in time metadata."), + "psLib.time.tables.index"); + psFree(tablesFrom); + psFree(tablesTo); + return false; + } + tablesIndex = psVectorCopy(tablesIndex, metadataItem->data.V, PS_TYPE_S32); + if(tablesIndex->n != numTables) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE,true,_("Incorrect vector size. Size: %ld, Expected %d."),tablesIndex->n,numTables); + psFree(tablesFrom); + psFree(tablesTo); + psFree(tablesIndex); + return false; + } + + // Get path to time data files + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.dir"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.dir"); + psFree(tablesFrom); + psFree(tablesTo); + psFree(tablesIndex); + return false; + } + tableDir = psStringCopy(metadataItem->data.V); + + // Table file names + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.files"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.files"); + + psFree(tablesFrom); + psFree(tablesTo); + psFree(tablesIndex); + psFree(tableDir); + return false; + } + tableNames = psStringCopy(metadataItem->data.V); + + // Get table format strings + metadataItem = psMetadataLookup(timeMetadata, "psLib.time.tables.format"); + if(metadataItem == NULL) { + p_psMemAllocatePersistent(initialPersistence); + psError(PS_ERR_BAD_PARAMETER_VALUE,true, _("Failed find '%s' in time metadata."), + "psLib.time.tables.format"); + psFree(tablesFrom); + psFree(tablesTo); + psFree(tablesIndex); + psFree(tableDir); + psFree(tableNames); + return false; + } + tableFormats = psStringCopy(metadataItem->data.V); + formatPtr = tableFormats; + + // Read time tables + bool no_problem = true; // True if we've detected no errors + namesPtr = tableNames; + while((tableName=getToken(&namesPtr, " ", &status)) != NULL) { + + // Form path with table name, adding one to length for last '/' that may not occur + // in string in cong file + fullTableName = (char*)psAlloc(strlen(tableDir)+strlen(tableName)+1+1); + + // Old strings may come back from psAlloc(), so set initial position to EOL + fullTableName[0]='\0'; + strcat(fullTableName, tableDir); + strcat(fullTableName, "/"); + strcat(fullTableName, tableName); + + // Get table format + tableFormat = getToken(&formatPtr,",",&status); + if(tableFormat == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE,no_problem,_("Failed find '%s' in time metadata."), + "psLib.time.tables.format"); + no_problem = false; + } + + // Create and read table + if(i < numTables) { + table = psLookupTableAlloc(fullTableName, (const char*)tableFormat, tablesIndex->data.S32[i]); + numLines = psLookupTableRead(table); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, no_problem, + _("Incorrect number of table files entered. Found: %d. Expected: %d."), i+1, numTables); + no_problem = false; + } + + // Place tables into metadata slightly altered names as keys to create consistent naming conventions + foundTable = false; + for(j=0; jsec = 0; + outTime->nsec = 0; + outTime->type = type; + outTime->leapsecond = false; + + return outTime; +} + + +bool psMemCheckTime(psPtr ptr) +{ + return ( psMemGetDeallocator(ptr) == (psFreeFunc)timeFree ); +} + + +psTime* psTimeGetNow(psTimeType type) +{ + struct timeval now; + psTime *time = NULL; + + // Allocate psTime struct + time = psTimeAlloc(type); + + // Verify time structure allocated + if(time == NULL) { + return NULL; + } + + // Get the system time + // if (gettimeofday(&now, (struct timezone *)0) == -1) { + if (gettimeofday(&now, 0) == -1) { + psError(PS_ERR_OS_CALL_FAILED, true, + _("Failed to determine the current time from gettimeofday function.")); + return NULL; + } + + // Convert timeval time to psTime + time->sec = now.tv_sec; + time->nsec = now.tv_usec*1000; + + // Add most leapseconds to UTC time to get TAI time if necessary + if(type == PS_TIME_TAI) { + time->sec += p_psTimeGetTAIDelta(time); + } + + return time; +} + +static psTime* convertTimeTAIUTC(psTime* time) +{ + psF64 deltaTAI = 0.0; + psS64 deltaSec = 0; + psU32 deltaNsec = 0; + psF64 deltaUTC = 0.0; + + // Determine delta to convert between UTC and TAI + deltaTAI = p_psTimeGetTAIDelta(time); + deltaSec = (psS64)(deltaTAI); + deltaNsec = (psU32)((deltaTAI - (psF64)deltaSec) * 1e9); + + // Determine seconds + time->sec -= deltaSec; + + // Check for underflow in nsec + if(deltaNsec > time->nsec) { + // Borrow second + time->nsec += 1e9; + time->sec--; + } + + // Determine nsec + time->nsec -= deltaNsec; + + // Check for overflow in nsec + if(time->nsec >= 1e9) { + time->nsec -= 1e9; + time->sec++; + } + + // Set new type + time->type = PS_TIME_UTC; + + // Check if leapsecond present in delta + deltaUTC = p_psTimeGetTAIDelta(time); + if(fabs(deltaTAI-deltaUTC) >= 1.0) { + time->sec++; + } + + return time; +} + +static psTime* convertTimeUTCTAI(psTime* time) +{ + psF64 delta = 0.0; + psS64 deltaSec = 0; + psU32 deltaNsec = 0; + + // Determine delta to convert between UTC and TAI + delta = p_psTimeGetTAIDelta(time); + + deltaSec = (psS64)(delta); + deltaNsec = (psU32)((delta - (psF64)deltaSec) * 1e9); + + // Determine seconds + time->sec += deltaSec; + + // Determine nsec + time->nsec += deltaNsec; + + // Check for overflow in nsec + if(time->nsec >= 1e9) { + time->nsec -= 1e9; + time->sec++; + } + + // Set new type + time->type = PS_TIME_TAI; + + //XXX: Set leapseconds to TRUE + // time->leapsecond = true; + return time; +} + +static psTime* convertTimeTAITT(psTime* time) +{ + // Add TT offset + time->sec += TAI_TT_OFFSET_SECONDS; + time->nsec += TAI_TT_OFFSET_NANOSECONDS; + + // Check for overflow in nsec + if(time->nsec >= 1e9) { + time->nsec -= 1e9; + time->sec++; + } + + // Set new type + time->type = PS_TIME_TT; + + return time; +} + +static psTime* convertTimeTTTAI(psTime* time) +{ + // Subtract TT offset + time->sec -= TAI_TT_OFFSET_SECONDS; + + // Check for nsec underflow + if(TAI_TT_OFFSET_NANOSECONDS > time->nsec) { + // Borrow second + time->sec--; + time->nsec += 1e9; + } + time->nsec -= TAI_TT_OFFSET_NANOSECONDS; + + // Check for overflow in nsec + if(time->nsec >= 1e9) { + time->nsec -= 1e9; + time->sec++; + } + + // Set new type + time->type = PS_TIME_TAI; + + return time; +} + +static psTime* convertTimeUTCUT1(psTime* time) +{ + psS64 ut1utc = 0; + + // Get UT1-UTC value + ut1utc = (psS64)(psTimeGetUT1Delta(time,PS_IERS_A) * 1e9); + + // Since UTC is within 0.9 sec of UT1 then nsec member is the member affected + if((ut1utc < 0) && (abs(ut1utc) > time->nsec)) { + // Borrow from sec + time->sec--; + if(time->leapsecond) { + time->leapsecond = false; + } else { + time->leapsecond = psTimeIsLeapSecond(time); + } + // Add to nsec + time->nsec += 1e9; + } + time->nsec += ut1utc; + + // Check for overflow in nsec + if(time->nsec >= 1e9) { + time->nsec -= 1e9; + time->sec++; + if(time->leapsecond) { + time->leapsecond = false; + time->sec--; + } else { + time->leapsecond = psTimeIsLeapSecond(time); + } + } + + // Set new type + time->type = PS_TIME_UT1; + + return time; +} + +psTime* psTimeConvert(psTime *time, + psTimeType type) +{ + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),time); + + // If the input type is UT1 then return time and generate error message + if(time->type == PS_TIME_UT1) { + psError(PS_ERR_BAD_PARAMETER_VALUE,true,"Cannot convert from UT1 time type"); + return NULL; + } + + // If the time to convert to is the same as psTime the return time + if (time->type == type) { + return time; + } + + // Convert from TAI to UTC, TT, UT1 + if(time->type == PS_TIME_TAI) { + // Convert from TAI to UTC + if(type == PS_TIME_UTC) { + time = convertTimeTAIUTC(time); + // Convert from TAI to TT + } else if(type == PS_TIME_TT) { + time = convertTimeTAITT(time); + // Convert from TAI to UT1 + } else if(type == PS_TIME_UT1) { + // Convert to UTC first + time = convertTimeTAIUTC(time); + // Convert UTC to UT1 + time = convertTimeUTCUT1(time); + // Convert from TAI to unknown time type + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified type, %d, is not supported."), type); + return NULL; + } + // Convert from TT to TAI, UTC, UT1 + } else if(time->type == PS_TIME_TT) { + // Convert from TT to UTC + if(type == PS_TIME_UTC) { + // Convert to TAI time first + time = convertTimeTTTAI(time); + // Convert from TAI to UTC + time = convertTimeTAIUTC(time); + // Convert from TT to TAI + } else if(type == PS_TIME_TAI) { + time = convertTimeTTTAI(time); + // Convert from TT to UT1 + } else if(type == PS_TIME_UT1) { + // Convert to UTC first + // Convert to TAI time first + time = convertTimeTTTAI(time); + // Convert from TAI to UTC + time = convertTimeTAIUTC(time); + // Convert from UTC to UT1 + time = convertTimeUTCUT1(time); + // Convert from TT to unknown time type + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified type, %d, is not supported."), type); + return NULL; + } + // Convert from UTC to TAI, TT, UT1 + } else if(time->type == PS_TIME_UTC) { + // Convert UTC to TAI + if(type == PS_TIME_TAI) { + time = convertTimeUTCTAI(time); + // Convert UTC to TT + } else if(type == PS_TIME_TT) { + // Convert to TAI time first + time = convertTimeUTCTAI(time); + // Convert TAI to TT + time = convertTimeTAITT(time); + // Convert UTC to UT1 + } else if(type == PS_TIME_UT1) { + time = convertTimeUTCUT1(time); + // Convert UTC to unknown time type + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified type, %d, is not supported."), type); + return NULL; + } + // Convert unknown time type + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified type, %d, is not supported."), time->type); + return NULL; + } + + return time; +} + +double psTimeToLMST(psTime *time, + double longitude) +{ + psF64 jdTdtDays = 0.0; + psF64 jdUt1Days = 0.0; + psF64 mjdUt1Days = 0.0; + psF64 lmstRad = 0.0; + psF64 fracDays = 0.0; + psF64 gmstRad = 0.0; + psF64 t = 0.0; + psF64 tu = 0.0; + psF64 const1 = 24110.5493771; + psF64 const2 = 8639877.3173760; + psF64 const3 = 307.4771600; + psF64 const4 = 0.0931118; + psF64 const5 = -0.0000062; + psF64 const6 = 0.0000013; + psTime *tdtTime = NULL; + psTime *ut1Time = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NAN); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NAN); + + // Verify input time is not in UT1 seconds + if(time->type == PS_TIME_UT1) { + psError(PS_ERR_BAD_PARAMETER_VALUE,true,_("Specified type, %d, is incorrect."),time->type); + return NAN; + } + + // Determine time reference to TT + tdtTime = psTimeAlloc(time->type); + tdtTime->sec = time->sec; + tdtTime->nsec = time->nsec; + tdtTime->leapsecond = time->leapsecond; + tdtTime = psTimeConvert(tdtTime,PS_TIME_TT); + + // Determine time reference to UT1 + ut1Time = psTimeAlloc(time->type); + ut1Time->sec = time->sec; + ut1Time->nsec = time->nsec; + ut1Time->leapsecond = time->leapsecond; + ut1Time = psTimeConvert(ut1Time,PS_TIME_UT1); + + // Calculate UT1 as Julian Centuries since J2000.0 + jdUt1Days = psTimeToJD(ut1Time); + mjdUt1Days = psTimeToMJD(ut1Time); + t = (jdUt1Days - 2451545.0)/36525.0; + + // Calculate TDT as Julian centuries since J2000.0 + jdTdtDays = psTimeToJD(tdtTime); + tu = (jdTdtDays - 2451545.0)/36525.0; + + // Calculate fractional part of MJD + fracDays = fmod(mjdUt1Days, 1.0); + + // Calculate Greenwich Mean Sidereal Time (GMST) in radians. + // Equation set up to minimize multiplications. + gmstRad = fracDays*TWOPI + + (const1+const2*tu+t*(const3+t*(const4+t*(const5+const6*t))))*S2R; + + // Place GMST between 0 and 2*pi + gmstRad = fmod(gmstRad, TWOPI); + + // Calculate Local Mean Sidereal Time (LMST) in radians + lmstRad = gmstRad + longitude; + + // Free temporary structs + psFree(ut1Time); + psFree(tdtTime); + + return lmstRad; +} + +double psTimeGetUT1Delta(const psTime *time, + psTimeBulletin bulletin) +{ + psU32 nTables = 2; + psF64 mjd = 0.0; + psF64 result = 0.0; + psU64 tableColumn = 0; + psF64 dut2ut1 = 0.0; + psF64 t = 0.0; + psVector* dut = NULL; + psMetadataItem* tableMetadataItem = NULL; + psLookupStatusType status = PS_LOOKUP_SUCCESS; + char* metadataTableNames[2] = {"dailyTable", "finalsTable"}; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NAN); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NAN); + + // Check for invalid bulletin specified + if((bulletin != PS_IERS_A) && (bulletin != PS_IERS_B)) { + psError(PS_ERR_BAD_PARAMETER_VALUE,true,"Invalid bulletin specified %d",bulletin); + return NAN; + } + + // Set lookup table column based on Bullentin + if(bulletin == PS_IERS_A) { + tableColumn = 3; + } else { + tableColumn = 6; + } + + // Attempt to find value through table lookup and interpolation + mjd = psTimeToMJD(time); + result = p_psTimeSearchTables(mjd,tableColumn,metadataTableNames,nTables,&status); + + // Value could not be found through table lookup and interpolation + if(status == PS_LOOKUP_PAST_TOP) { + + // Date too early for tables. Get default time delta value from metadata, and issue warning. + psLogMsg("psLib.astro", PS_LOG_WARN,_("Specified psTime predates (%g) all tables of %s information."),mjd,"UT1-UTC"); + + // Lookup value from time metadata loaded from pslib.config + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.before.dut"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.before.dut"); + return NAN; + } + result = tableMetadataItem->data.F64; + + } else if(status == PS_LOOKUP_PAST_BOTTOM) { + /* Date too late for tables. Issue warning and use following formulae for predicting + ahead of the most recent available table entry. + ut1-utc = [0] + [1]*(MJD - [2]) - (ut2-ut1) + [0, 1, 2] = @psLib.time.predict.dut + ut2-ut1 = 0.022 sin(2*pi*t) - 0.012 cos(2*pi*t) - 0.006 sin(4*pi*t) + 0.007 cos(4*pi*t) + t = 2000.0 + (MJD - 51544.03)/365.2422 + */ + // Generate warning of postdate information + psLogMsg("psLib.astro", PS_LOG_WARN,_("Specified psTime postdates (%g) all tables of %s information."), mjd, "UT1-UTC"); + + // Lookup values to calculate prediction + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.predict.dut"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.predict.dut"); + return NAN; + } + dut = (psVector*)tableMetadataItem->data.V; + PS_ASSERT_PTR_NON_NULL(dut,NAN); + + // Calculate predication of future UT1-UTC + t = 2000.0 + (mjd - 51544.03)/365.2422; + dut2ut1 = 0.022*sin(TWOPI*t) - 0.012*cos(TWOPI*t) - 0.006*sin(4.0*M_PI*t) + 0.007*cos(4.0*M_PI*t); + result = dut->data.F64[0] + dut->data.F64[1]*(mjd - dut->data.F64[2]) - dut2ut1; + + } else if(status != PS_LOOKUP_SUCCESS) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed time table interpolation.")); + return NAN; + } + + return result; +} + +static double DMOD(double x, double y) +{ + double value = x - y * trunc(x/y); + return value; +} + +psTime *psTime_TideUT1Corr(const psTime *time) +{ + PS_ASSERT_PTR_NON_NULL(time, NULL); + psTime *out = NULL; + //Also see psEOC_PolarTideCorr for more info. + + // Convert psTime to MJD + double MJD = psTimeToMJD(time); + if (isnan(MJD)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Time conversion to MJD failed. Invalid input time.\n"); + return NULL; + } + + // Calculate number of Julian centuries since 2000 + double RJD = MJD; + + //Formula comes from fortran reference + //DMOD in fortran ref. = double remainder -> x - y * trunc(x/y) + double T, L, LPRIME, CAPF, CAPD, OMEGA, THETA, CORZ; + double ARG1, ARG2, ARG3, ARG4, ARG5, ARG6, ARG7, ARG8; + double T2, T3, T4; + T = (RJD - 51544.5) / 36525.0; + T2 = T*T; + T3 = T*T*T; + T4 = T*T*T*T; + L = -0.0002447 * T4 + 0.051635 * T3 + 31.8792 * T2 + 1717915923.2178 * T + 485868.249036; + L = DMOD(L, 1296000.0); + LPRIME = -0.00001149 * T4 - 0.000136 * T3 - 0.5532 * T2 + 129596581.0481 * T + 1287104.79305; + LPRIME = DMOD(LPRIME, 1296000.0); + CAPF = 0.00000417 * T4 - 0.001037 * T3 - 12.7512 * T2 + 1739527262.8478 * T + 335779.526232; + CAPF = DMOD(CAPF, 1296000.0); + CAPD = -0.00003169 * T4 + 0.006593 * T3 - 6.3706 * T2 + 1602961601.209 * T + 1072260.70369; + CAPD = DMOD(CAPD, 1296000.0); + OMEGA = -0.00005939 * T4 + 0.007702 * T3 + 7.4722 * T2 - 6962890.2665 * T + 450160.398036; + OMEGA = DMOD(OMEGA, 1296000.0); + THETA = (67310.54841 + (876600.0 * 3600.0 + 8640184.812866) * T + 0.093104 * T2 - + 6.2e-6 * T3) * 15.0 + 648000.0; + ARG7 = DMOD((-L - 2.0 * CAPF - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) + - M_PI / 2.0; + ARG1 = DMOD((-2.0 * CAPF - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) - M_PI / 2.0; + ARG2 = DMOD((-2.0 * CAPF + 2.0 * CAPD - 2.0 * OMEGA + THETA) * M_PI / 648000.0, 2.0 * M_PI) + - M_PI / 2.0; + ARG3 = DMOD(THETA * M_PI / 648000.0, 2.0 * M_PI) - M_PI / 2.0; + ARG4 = DMOD((-L - 2.0 * CAPF - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + ARG5 = DMOD((-2.0 * CAPF - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + ARG6 = DMOD((-2.0 * CAPF + 2.0 * CAPD - 2.0 * OMEGA + 2.0 * THETA) * M_PI / 648000.0, + 2.0 * M_PI); + ARG8 = DMOD((2.0 * THETA) * M_PI / 648000.0, 2.0 * M_PI); + CORZ = 0.0245 * sin(ARG7) + 0.0503 * cos(ARG7) + +0.1210 * sin(ARG1) + 0.1605 * cos(ARG1) + +0.0286 * sin(ARG2) + 0.0516 * cos(ARG2) + +0.0864 * sin(ARG3) + 0.1771 * cos(ARG3) + -0.0380 * sin(ARG4) - 0.0154 * cos(ARG4) + -0.1617 * sin(ARG5) - 0.0720 * cos(ARG5) + -0.0759 * sin(ARG6) - 0.0004 * cos(ARG6) + -0.0196 * sin(ARG8) - 0.0038 * cos(ARG8); + CORZ = CORZ * 0.1e-3; + + double timeCheck = (double)(time->sec) + (double)(1e-9*time->nsec); + if ( (timeCheck + CORZ) < 0.0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid time for Tide Correction.\n"); + return NULL; + } + out = psTimeAlloc(time->type); + *out = *time; + if (out->type != PS_TIME_UT1) { + out = psTimeConvert(out, PS_TIME_UT1); + } + //see if corrections include seconds or just nano-seconds + //nano-seconds must be converted (scaled) to integer values & total cannot be negative + if (fabs(CORZ) > 1.0) { + int sec = (int)CORZ; + out->sec += sec; + int nsec = (int)((CORZ - sec)*1e9); + out->nsec += nsec; + } else { + int nsec = out->nsec + (int)(CORZ * 1e9); + if (nsec < 0) { + out->sec += -1; + out->nsec = (int)(1e9) + nsec; + } else { + out->nsec = nsec; + } + } + return out; +} + +psSphere* p_psTimeGetPoleCoords(const psTime* time) +{ + psU32 nTables = 3; + psF64 x = 0.0; + psF64 y = 0.0; + psF64 mjd = 0.0; + psF64 a = 0.0; + psF64 c = 0.0; + psF64 mjdPred = 0.0; + psSphere* output = NULL; + psLookupStatusType xStatus = PS_LOOKUP_SUCCESS; + psLookupStatusType yStatus = PS_LOOKUP_SUCCESS; + psMetadataItem *tableMetadataItem = NULL; + char *metadataTableNames[3] = {"dailyTable", "eopcTable", "finalsTable"}; + psVector *xp = NULL; + psVector *yp = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NULL); + + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified type, %d, is incorrect."), time->type); + return NULL; + } + + // Attempt to find value through table lookup and interpolation + mjd = psTimeToMJD(time); + // x = p_psTimeSearchTables(mjd, 0, &xStatus, metadataTableNames, nTables); + x = p_psTimeSearchTables(mjd, 0, metadataTableNames, nTables,&xStatus); + // y = p_psTimeSearchTables(mjd, 0, &yStatus, metadataTableNames, nTables); + y = p_psTimeSearchTables(mjd, 0, metadataTableNames, nTables,&yStatus); + + // Value could not be found through table lookup and interpolation + if(xStatus==PS_LOOKUP_PAST_TOP && yStatus==PS_LOOKUP_PAST_TOP) { + + // Date too earlier for tables. Get default polar coodinate values from metadata, and issue warning. + #if 0 + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified psTime predates (%g) all tables of %s information."), mjd, "polar motion"); + return NULL; + #else + + psLogMsg("psLib.astro", PS_LOG_ERROR, _("Specified psTime predates (%g) all tables of %s information."), mjd, "polar motion"); + #endif + + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.before.xp"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed find '%s' in time metadata."), "psLib.time.before.xp"); + return NULL; + } + x = tableMetadataItem->data.F64; + + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.before.yp"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), "psLib.time.before.yp"); + return NULL; + } + y = tableMetadataItem->data.F64; + + } else if(xStatus==PS_LOOKUP_PAST_BOTTOM && yStatus==PS_LOOKUP_PAST_BOTTOM) { + + /* Date too late for tables. Issue warning and use following formulae for predicting + ahead of the most recent available table entry. + x = [0] + [1]*cos a + [2]*sin a + [3]*cos c + [4]*sin c + [0], [1], [2], [3] = @psLib.time.predict.xp + y = [0] + [1]*cos a + [2]*sin a + [3]*cos c + [4]*sin c + [0], [1], [2], [3] = @psLib.time.predict.yp + a = 2*pi*(mjd - pslib.time.predict.mjd)/365.25 + c = 2*pi*(mjd - pslib.time.predict.mjd)/435.0 + */ + #if 0 + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psTime postdates (%g) all tables of %s information."), mjd, "polar motion"); + return NULL; + #else + + psLogMsg("psLib.astro", PS_LOG_ERROR, + _("Specified psTime postdates (%g) all tables of %s information."), mjd, "polar motion"); + #endif + + // Get predicted MJD + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.predict.mjd"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), + "psLib.time.predict.mjd"); + return NULL; + } + mjdPred = tableMetadataItem->data.F64; + + // Get xp + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.predict.xp"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), "psLib.time.predict.xp"); + return NULL; + } + xp = (psVector*)tableMetadataItem->data.V; + PS_ASSERT_PTR_NON_NULL(xp,NULL); + + // Get yp + tableMetadataItem = psMetadataLookup(timeMetadata, "psLib.time.predict.yp"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), "psLib.time.predict.yp"); + return NULL; + } + yp = (psVector*)tableMetadataItem->data.V; + PS_ASSERT_PTR_NON_NULL(yp,NULL); + + // Calculate "a" and "c" constants + a = TWOPI*(mjd - mjdPred)/365.25; + c = TWOPI*(mjd - mjdPred)/435.0; + + // Calculate x and y polar coordinates + x = xp->data.F64[0] + + xp->data.F64[1]*cos(a) + + xp->data.F64[2]*sin(a) + + xp->data.F64[3]*cos(c) + + xp->data.F64[4]*sin(c); + + y = yp->data.F64[0] + + yp->data.F64[1]*cos(a) + + yp->data.F64[2]*sin(a) + + yp->data.F64[3]*cos(c) + + yp->data.F64[4]*sin(c); + + } else if(xStatus!=PS_LOOKUP_SUCCESS || yStatus!=PS_LOOKUP_SUCCESS) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed time table interpolation.")); + return NULL; + } + + // Create output sphere and convert arcsec to radians (i.e. x/60/60*PS_PI/180) + output = psAlloc(sizeof(psSphere)); + output->r = x * M_PI / 648000.0; + output->d = y * M_PI / 648000.0; + + return output; +} + +psF64 p_psTimeGetTAIDelta(const psTime *time) +{ + psF64 jd = 0.0; + psF64 mjd = 0.0; + psF64 out = 0.0; + psF64 const1 = 0.0; + psF64 const2 = 0.0; + psF64 const3 = 0.0; + psLookupTable* table = NULL; + psMetadataItem *tableMetadataItem = NULL; + psVector *results = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NAN); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NAN); + + // Check if psTime tables are loaded/loadable + if(!p_psTimeInit(p_psTimeConfigFileName())) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed to open file %s."), + p_psTimeConfigFileName()); + return NAN; + } + + // Get table from metadata + tableMetadataItem = psMetadataLookup(timeMetadata, "taiTable"); + if(tableMetadataItem == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed find '%s' in time metadata."), "taiTable"); + return NAN; + } + table = (psLookupTable*)tableMetadataItem->data.V; + PS_ASSERT_PTR_NON_NULL(table,0); + + // Determine Julian and modified Julian dates used in table lookup and time delta calculation + if(time->sec < 0) { + // psTime earlier than epoch + jd = time->sec / SEC_PER_DAY - time->nsec / NSEC_PER_DAY + JD_EPOCH_OFFSET; + mjd = time->sec / SEC_PER_DAY - time->nsec / NSEC_PER_DAY + MJD_EPOCH_OFFSET; + } else { + // psTime greater than epoch + jd = time->sec / SEC_PER_DAY + time->nsec / NSEC_PER_DAY + JD_EPOCH_OFFSET; + mjd = time->sec / SEC_PER_DAY + time->nsec / NSEC_PER_DAY + MJD_EPOCH_OFFSET; + } + + // Set ceiling of the julian date to the last entry in the lookup table + if(table->validTo < jd) { + jd = table->validTo; + } + + // Interpolation of look up table + results = psLookupTableInterpolateAll(table, jd); + + // Check for successful interpolation + if(results == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed time table interpolation.")); + return NAN; + } + + // Set constants from table + const1 = results->data.F64[1]; + const2 = results->data.F64[2]; + const3 = results->data.F64[3]; + + // If const3 not equal to zero solve for difference else floor of const1 + if(fabs(const3-0.0) > FLT_EPSILON) { + out = const1 + (mjd - const2) * const3; + } else { + out = floor(const1); + } + + psFree(results); + + return out; +} + +long psTimeLeapSecondDelta(const psTime *time1, + const psTime *time2) +{ + psS64 diff = 0; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time1,0); + PS_ASSERT_PTR_NON_NULL(time2,0); + PS_ASSERT_INT_WITHIN_RANGE(time1->nsec,0,(psU32)((1e9)-1),0); + PS_ASSERT_INT_WITHIN_RANGE(time2->nsec,0,(psU32)((1e9)-1),0); + diff = abs((psS64)p_psTimeGetTAIDelta((psTime*)time1)-(psS64)p_psTimeGetTAIDelta((psTime*)time2)); + return diff; +} + +bool psTimeIsLeapSecond(const psTime* utc) +{ + psTime* prevUtc = NULL; + bool returnValue = false; + + // Check for valid time + PS_ASSERT_PTR_NON_NULL(utc,false); + + // Verify time is UTC type + if(utc->type != PS_TIME_UTC) { + psError(PS_ERR_BAD_PARAMETER_VALUE,true,_("Specified type, %d, is incorrect."),utc->type); + return false; + } + + // Allocate time to hold utc - 1 second + prevUtc = psTimeAlloc(PS_TIME_UTC); + prevUtc->sec = utc->sec - 1; + + // Check the absolute difference between the two times for leapsecond + if(psTimeLeapSecondDelta(utc,prevUtc) >= 1.0) { + returnValue = true; + } else { + returnValue = false; + } + + // Free prevUtc + psFree(prevUtc); + + return returnValue; +} + +double psTimeToJD(const psTime *time) +{ + psF64 jd = NAN; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NAN); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NAN); + + psTime *time2 = psTimeCopy(time); + //XXX: ADD says that this formula works only for PS_TIME_TAI, so adding the following: + if (time->type == PS_TIME_UTC || time->type == PS_TIME_TT) { + time2 = psTimeConvert(time2, PS_TIME_TAI); + } + + // Julian date conversion + if(time2->sec < 0) { + // psTime earlier than epoch + jd = time2->sec / SEC_PER_DAY - time2->nsec / NSEC_PER_DAY + JD_EPOCH_OFFSET; + } else { + // psTime greater than epoch + jd = time2->sec / SEC_PER_DAY + time2->nsec / NSEC_PER_DAY + JD_EPOCH_OFFSET; + } + + psFree(time2); + return jd; +} + +double psTimeToMJD(const psTime *time) +{ + psF64 mjd = NAN; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NAN); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NAN); + psTime *time2 = psTimeCopy(time); + //XXX: ADD says that this formula works only for PS_TIME_TAI, so adding the following: + if (time->type == PS_TIME_UTC || time->type == PS_TIME_TT) { + time2 = psTimeConvert(time2, PS_TIME_TAI); + } + + // Modified Julian date conversion + if(time2->sec < 0) { + // psTime earlier than epoch + mjd = time2->sec / SEC_PER_DAY - time2->nsec / NSEC_PER_DAY + MJD_EPOCH_OFFSET; + } else { + // psTime greater than epoch + mjd = time2->sec / SEC_PER_DAY + time2->nsec / NSEC_PER_DAY + MJD_EPOCH_OFFSET; + } + psFree(time2); + return mjd; +} + +psString psTimeToISO(const psTime *time) +{ + psS32 ds = 0; + char *timeString = NULL; + char *tempString = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NULL); + + // Check valid year range + PS_ASSERT_S64_WITHIN_RANGE(time->sec, (psS64)YEAR_0000_SEC, (psS64)YEAR_9999_SEC, NULL); + + // Allocate temp strings + tempString = psAlloc(MAX_TIME_STRING_LENGTH); + timeString = psAlloc(MAX_TIME_STRING_LENGTH); + + // Convert nanoseconds to decaseconds + ds = time->nsec / 100000000; + + // tmTime variable is statically allocated, no need to free + struct tm *tmTime = psTimeToTM(time); + + // Converts psTime to YYYY-MM-DDThh:mm:ss.sss in string form + if (!strftime(tempString, MAX_TIME_STRING_LENGTH, "%Y-%m-%dT%H:%M:%S", tmTime)) { + psError(PS_ERR_OS_CALL_FAILED, true, _("Failed to convert a time via strftime function.")); + return NULL; + } + psFree(tmTime); + + // Check if time is UTC and leapsecond + if(((time->type==PS_TIME_UTC)||(time->type==PS_TIME_UT1)) && (time->leapsecond)) { + // Modify second to be 60 + tempString[17] = '6'; + tempString[18] = '0'; + } + + // Create string with milliseconds + if (snprintf(timeString, MAX_TIME_STRING_LENGTH, "%s.%1d", tempString, ds) < 0) { + psError(PS_ERR_OS_CALL_FAILED, true, _("Failed to append millisecond to time string with snprintf function.")); + return NULL; + } + psFree(tempString); + + return timeString; +} + +struct tm *psTimeToTM(const psTime *time) +{ + PS_ASSERT_PTR_NON_NULL(time,NULL); + + // XXX is it safe to assume that time_t is always an integer value? + time_t sec = time->sec; + + // if this is NOT a UTC time then we want to make sure tm.tm_sec does not + // end up being set to 60 + if (!time->type == PS_TIME_UTC) + { + // If leapsecond use previous day + if (time->leapsecond) { + sec--; + } + } + + // struct tm can handle leapseconds + struct tm *tmTime = psAlloc(sizeof(struct tm)); + gmtime_r(&sec, tmTime); + + return tmTime; +} + +struct timeval* psTimeToTimeval(const psTime *time) +{ + struct timeval *timevalTime = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->sec,0,INT32_MAX,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NULL); + + // Allocate structure timeval + timevalTime = (struct timeval*)psAlloc(sizeof(struct timeval)); + + // Set structure members + timevalTime->tv_sec = time->sec; + timevalTime->tv_usec = time->nsec / 1000; + + return timevalTime; +} + +psTime* psTimeFromJD(double jd) +{ + psF64 days = 0.0; + psF64 seconds = 0.0; + psTime *outTime = NULL; + + // Allocate psTime struct + outTime = psTimeAlloc(PS_TIME_TAI); + + // Julian date conversion courtesy of Eugene Magnier + days = jd - 2440587.5; + seconds = days * SEC_PER_DAY; + if(seconds < 0.0) { + outTime->nsec = (seconds - (psS64)seconds) * -1000000000.0; // psTime earlier than epoch + } else { + outTime->nsec = (seconds - (psS64)seconds) * 1000000000.0; // psTime greater than epoch + } + outTime->sec = seconds; + + // Error check + PS_ASSERT_INT_WITHIN_RANGE(outTime->nsec,0,(psU32)((1e9)-1),outTime); + + return outTime; +} + +psTime* psTimeFromMJD(double mjd) +{ + psF64 days = 0.0; + psF64 seconds = 0.0; + psTime *outTime = NULL; + + // Allocate psTime struct + outTime = psTimeAlloc(PS_TIME_TAI); + + // Modified Julian date conversion courtesy of Eugene Magnier + days = mjd - 40587.0; + seconds = days * SEC_PER_DAY; + + if(seconds < 0.0) { + outTime->nsec = (seconds - (psS64)seconds) * -1000000000.0; // psTime earlier than epoch + } else { + outTime->nsec = (seconds - (psS64)seconds) * 1000000000.0; // psTime greater than epoch + } + outTime->sec = seconds; + + // Error check + PS_ASSERT_INT_WITHIN_RANGE(outTime->nsec,0,(psU32)((1e9)-1),NULL); + + return outTime; +} + +psTime* psTimeFromISO(const char *input, + psTimeType type) +{ + + // Check for NULL string + PS_ASSERT_PTR_NON_NULL(input,NULL); + PS_ASSERT_INT_WITHIN_RANGE(type, PS_TIME_TAI, PS_TIME_TT, NULL); + + // Convert YYYY-MM-DDThh:mm:ss.sss[Z] in string form to tm time + psTime *outTime = psTimeStrptime(input, "%Y-%m-%dT%H:%M:%S"); + if (!outTime) { + // try for date with assumed 00:00:00 time + outTime = psTimeStrptime(input, "%Y-%m-%d"); + if (!outTime) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified ISO Time string, '%s', is malformed. Must be in 'YYYY-MM-DDThh:mm:ss.sss' format."), input); + return NULL; + } + } + + outTime->type = type; + + return outTime; +} + +psTime* psTimeFromTT(psS64 sec, + psU32 nsec) +{ + psTime* outTime = NULL; + + // Verify nsec within range + PS_ASSERT_INT_WITHIN_RANGE(nsec,0,(psU32)((1e9)-1),NULL); + + // Allocate psTime data + outTime = psTimeAlloc(PS_TIME_TT); + + // Set data members + outTime->sec = sec; + outTime->nsec = nsec; + + // Return data structure + return outTime; +} + +psTime* psTimeFromUTC(psS64 sec, + psU32 nsec, + bool leapsecond) +{ + psTime* outTime = NULL; + + // Verify nsec within range + PS_ASSERT_INT_WITHIN_RANGE(nsec,0,(psU32)((1e9)-1),NULL); + + // Allocate psTime data + outTime = psTimeAlloc(PS_TIME_UTC); + + // Set data members + outTime->sec = sec; + outTime->nsec = nsec; + + // Set leapsecond flag if necessary + outTime->leapsecond = psTimeIsLeapSecond(outTime); + + return outTime; +} + +psTime* psTimeFromTimeval(const struct timeval *input) +{ + psTime *outTime = NULL; + + + // Error check + PS_ASSERT_PTR_NON_NULL(input,NULL); + + // Allocate psTime struct + outTime = psTimeAlloc(PS_TIME_TAI); + + // Convert to psTime + outTime->sec = input->tv_sec; + outTime->nsec = input->tv_usec * 1000; + + // Error check + PS_ASSERT_INT_WITHIN_RANGE(outTime->nsec,0,(psU32)((1e9)-1),outTime); + + return outTime; +} + +psTime* psTimeFromTM(const struct tm* time) +{ + psS64 year; + psS64 month; + psS64 day; + psS64 hour; + psS64 minute; + psS64 seconds; + psS64 temp; + psTime *outTime = NULL; + + // Error check + PS_ASSERT_PTR_NON_NULL(time,NULL); + + // Allocate psTime struct + outTime = psTimeAlloc(PS_TIME_TAI); + + // Extract data from TM struct + year = time->tm_year + 1900; + month = time->tm_mon + 1; + day = time->tm_mday; + hour = time->tm_hour; + minute = time->tm_min; + seconds = time->tm_sec; + + // Make month in range 3..14 (treat Jan & Feb as months 13..14 of prev year) + if( month <= 2 ) + { + temp = (14 - month) / 12; + // year -= (temp = (14 - month) / 12); + year -= temp; + month += 12 * temp; + } else if(month > 14) + { + temp = (month - 3) / 12; + // year += (temp = (month - 3) / 12); + year += temp; + month -= 12 * temp; + } + + // Make year positive + if (year < 0 ) + { + day -= 146097 * (temp = (399 - year) / 400); + year += 400 * temp; + } + + // Add day of month, days of previous 0-11 month period that began w/March, days of previous 0-399 year + // period that began w/March of a 400-multiple year), days of any 400-year periods before that, and 306 + // days to adjust from Mar 1, year 0-relative to Jan 1, year 1-relative. Add hours, minutes, and seconds. + day += (month * 367 - 1094) / 12 + year % 100 * 1461 / 4 + (year/100 * 36524 + year/400) - 306; + + outTime->sec = ((day - 1) * SEC_PER_DAY - 62135596800) + + (hour * SEC_PER_HOUR) + + (minute * SEC_PER_MINUTE) + + seconds; + + // C's TM does not define a microsecond field. Microseconds must be manipulated by calling function. + outTime->nsec = 0; + + // Error check + PS_ASSERT_INT_WITHIN_RANGE(outTime->nsec,0,(psU32)((1e9)-1),outTime); + + return outTime; +} + +psTime* psTimeStrptime(const char *s, const char *format) +{ + PS_ASSERT_PTR_NON_NULL(s, NULL); + PS_ASSERT_PTR_NON_NULL(format, NULL); + + double fractionalSeconds = 0.0; + + struct tm tmTime; + tmTime.tm_year = tmTime.tm_mon = tmTime.tm_mday = 0; + tmTime.tm_hour = tmTime.tm_min = tmTime.tm_sec = 0; + char *lastChar = strptime(s, format, &tmTime); + if (!lastChar) { + psError(PS_ERR_UNKNOWN, true, "error parsing time string"); + return NULL; + } + + if (*lastChar != '\0') { + psTrace("psLib.astrom", 3, "handling fractional second in time string\n"); + // XXXXXXXXXXXXXXX + // XXX this is a really stupid error: + // we are dropping the fractional seconds with this conversion + // I've put in a proposed fix, but PLEASE test!!! + if (*lastChar == '.') { + char *reallyLast; + fractionalSeconds = strtod (lastChar, &reallyLast); + if (!reallyLast) { + psWarning("time string was not completely consumed\n"); + } + } + } + + psTime *time = psTimeFromTM(&tmTime); + if (!time) { + psError(PS_ERR_UNKNOWN, false, "failed to generate a psTime"); + return NULL; + } + + time->nsec += fractionalSeconds * 1e9; + return time; +} + +psString psTimeStrftime(const psTime *time, const char *format) +{ + PS_ASSERT_PTR_NON_NULL(time, NULL); + PS_ASSERT_PTR_NON_NULL(format, NULL); + + struct tm *tmTime = psTimeToTM(time); + + psString s = psAlloc(MAX_TIME_STRING_LENGTH); + size_t size = strftime(s, MAX_TIME_STRING_LENGTH, format, tmTime); + psFree(tmTime); + // it's worth nothing that strftime() can zero without an error having + // occured don't believe it's worth supporting that edge case. See + // strftime(3) for further details. + if (size == 0) { + psError(PS_ERR_UNKNOWN, true, "failed to stringify a psTime"); + return NULL; + } + + return s; +} + +psTime* psTimeMath(const psTime *time, + double delta) +{ + psF64 sec = 0.0; + psTime *outTime = NULL; + psTime *tempTime = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(time,NULL); + PS_ASSERT_INT_WITHIN_RANGE(time->nsec,0,(psU32)((1e9)-1),NULL); + + // Convert time to TAI if necessary, but without changing input arguments + if(time->type == PS_TIME_UTC) { + tempTime = psTimeAlloc(PS_TIME_UTC); + tempTime->sec = time->sec; + tempTime->nsec = time->nsec; + tempTime = psTimeConvert(tempTime, PS_TIME_TAI); + outTime = psTimeAlloc(PS_TIME_TAI); + } else { + tempTime = psMemIncrRefCounter((psTime*)time); + outTime = psTimeAlloc(time->type); + } + + // Create output time + sec = delta + (psF64)tempTime->sec + (psF64)tempTime->nsec/1e9; + PS_ASSERT_S64_WITHIN_RANGE((psS64)sec, (psS64)0, PS_MAX_S64, NULL); + outTime->sec = (psS64)sec; + outTime->nsec = (psU32)((sec - (psF64)outTime->sec)*1e9); + + // Error check + PS_ASSERT_INT_WITHIN_RANGE(outTime->nsec,0,(psU32)((1e9)-1), NULL); + + // Convert result to same time type as input + if(time->type == PS_TIME_UTC) { + outTime = psTimeConvert(outTime, PS_TIME_UTC); + } + + psFree(tempTime); + + return outTime; +} + +double psTimeDelta(const psTime *time1, + const psTime *time2) +{ + psF64 uSec1 = 0.0; + psF64 uSec2 = 0.0; + psTime *tempTime1 = NULL; + psTime *tempTime2 = NULL; + + // Error checks + // XXX nsec is U32, use an integer for comparison + PS_ASSERT_PTR_NON_NULL(time1,0.0); + PS_ASSERT_INT_WITHIN_RANGE(time1->nsec,0,(psU32)(999999999),0.0); + PS_ASSERT_PTR_NON_NULL(time2,0.0); + PS_ASSERT_INT_WITHIN_RANGE(time2->nsec,0,(psU32)(999999999),0.0); + + // Verify both times of the same type + if(time1->type != time2->type) { + psError(PS_ERR_BAD_PARAMETER_VALUE,true,_("Specified type, %d, is incorrect."),time1->type); + return NAN; + } + + // Convert time to TAI if necessary, but without changing input arguments + if(time1->type == PS_TIME_UTC) { + tempTime1 = psTimeAlloc(PS_TIME_UTC); + tempTime1->sec = time1->sec; + tempTime1->nsec = time1->nsec; + tempTime1 = psTimeConvert(tempTime1, PS_TIME_TAI); + } else { + tempTime1 = psMemIncrRefCounter((psTime*)time1); + } + if(time2->type == PS_TIME_UTC) { + tempTime2 = psTimeAlloc(PS_TIME_UTC); + tempTime2->sec = time2->sec; + tempTime2->nsec = time2->nsec; + tempTime2 = psTimeConvert(tempTime2, PS_TIME_TAI); + } else { + tempTime2 = psMemIncrRefCounter((psTime*)time2); + } + + uSec1 = tempTime1->sec >= 0 ? 1.0 : -1.0; + uSec1 = uSec1*tempTime1->nsec/1e9; + uSec2 = tempTime2->sec >= 0 ? 1.0 : -1.0; + uSec2 = uSec2*tempTime2->nsec/1e9; + psF64 out = (tempTime1->sec-tempTime2->sec) + (uSec1-uSec2); + + psFree(tempTime1); + psFree(tempTime2); + + return out; +} + +void psTimeInitialize(const char *timeConfig) +{ + p_psTimeInit(timeConfig); +} + +void psTimeFinalize(void) +{ + p_psTimeFinalize(); +} + +psTime *psTimeCopy(const psTime *inTime) +{ + PS_ASSERT_PTR_NON_NULL(inTime, NULL); + psTime *outTime = psTimeAlloc(inTime->type); + if (outTime == NULL) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Invalid type specified in psTimeCopy. %x", inTime->type); + return NULL; + } + // *outTime = *inTime; + outTime->sec = inTime->sec; + outTime->nsec = inTime->nsec; + outTime->leapsecond = inTime->leapsecond; + return outTime; +} + +// XXX EAM : I've changed the timers to report TAI +// this makes more sense because it has monotonically increasing seconds +// would be even better if we could get a TAI value without doing a big lookup... + +static psHash *timers = NULL; + +// free all timers +static void psTimerFree () +{ + p_psTimeFinalize(); + psFree(timers); + timers = NULL; + return; +} + +// start/restart a named timer +bool psTimerStart (char *name) +{ + if (name == NULL) + return false; + if (timers == NULL) { + timers = psHashAlloc (16); + } + psTime *start = psTimeGetNow (PS_TIME_TAI); + psHashAdd (timers, name, start); + psFree (start); + return true; +} + +// clear the timer, return elapsed time to date, or NAN if not previously defined +psF64 psTimerClear (char *name) +{ + if (name == NULL) + return NAN; + psF64 delta = psTimerMark(name); + + psTime *start = psTimeGetNow (PS_TIME_TAI); + psHashAdd (timers, name, start); + psFree (start); + return delta; +} + +// get current elapsed time on named timer (NAN if not defined) +psF64 psTimerMark (char *name) +{ + if (timers == NULL) + return (NAN); + psTime *start = psHashLookup (timers, name); + if (start == NULL) + return (NAN); + + psTime *mark = psTimeGetNow (PS_TIME_TAI); + psF64 delta = psTimeDelta (mark, start); + psFree (mark); + return delta; +} + +bool psTimerStop(void) +{ + psTimerFree(); + return true; +} + Index: /branches/rel-1-1/psLib/src/astro/psTime.h =================================================================== --- /branches/rel-1-1/psLib/src/astro/psTime.h (revision 12167) +++ /branches/rel-1-1/psLib/src/astro/psTime.h (revision 12167) @@ -0,0 +1,480 @@ +/** @file psTime.h + * + * @brief Definitions for time, time utilities, and conversion functions for use + * with psLib astronomy functions. + * + * A collection of functions are required by psLib to manipulate time data. These + * functions primarily consist of conversions between specific time formats. They + * use the UNIX timeval time system as the base upon which International Atomic + * Time (TAI) and Universal Time Coordinated (UTC) are calculated. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.55 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:36:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSTIME_H +#define PSTIME_H + +/// @addtogroup Astro Astronomy +/// @{ + +#include +#include +#include + +#include "psType.h" +#include "psImage.h" +#include "psLookupTable.h" +#include "psCoord.h" + +#if defined(__APPLE__) // incorrectly missing in time.h +struct tm *gmtime_r(const time_t *, struct tm *); +#endif + +struct psSphere; + +/** Time type. + * + * Enumeration for psTime types, TAI or UTC time. + */ +typedef enum { + PS_TIME_TAI, ///< Temps Atomique International (TAI) time (time with leapseconds) + PS_TIME_UTC, ///< Universal Time Coordinated (UTC) time (time without leapseconds) + PS_TIME_UT1, ///< Universal Time corrected for polar motion + PS_TIME_TT, ///< Terrestrial Time +} psTimeType; + +/** Time Bulletin type + * + * Enumeration for psTimeBulletin type, A or B. + */ +typedef enum { + PS_IERS_A, ///< IERS Bulletin A + PS_IERS_B, ///< IERS Bulletin B +} psTimeBulletin; + +/** Definition of psTime. + * + * The psTime struct is used by psLib to represent time values critical to + * astronomical calculations. This structure represents a time which is + * equivalent to TAI (International Atomic Time) and is measured in both + * seconds and microseconds. + */ +typedef struct +{ + psS64 sec; ///< Seconds since epoch, Jan 1, 1970. + psU32 nsec; ///< Nanoseconds since last second. + bool leapsecond; ///< if time falls on UTC leapsecond + psTimeType type; ///< Type of time. +} +psTime; + + +// get the pslib.config filename by checking environment variable first, then original installation area. +const char *p_psTimeConfigFileName(); + + +/** Initialize time data. + * + * Reads config and data files associated with various time conversions. + * + * @return bool: True for success, false for failure. + */ +bool p_psTimeInit( + const char *fileName ///< File name containing config/data info +); + +/** Initialize time data. + * + * Reads the configuration file and sets up the appropriate psTimeTables and predictions. + */ +void psTimeInitialize( + const char *timeConfig ///< psTime configuration file +); + +/** Free memory persistant time data. + * + * Frees time data to be held in memory until the end of successful program execution. + * + * @return void: void. + */ +bool p_psTimeFinalize(void); + +/** Frees memory that was allocated by psTime functions. + * + * Allows a subsequent search for leaked memory. + */ +void psTimeFinalize(void); + +/** Allocate time struct. + * + * Allocates an empty time struct. User must specify the psTimeType + * (PS_TIME_TAI or PS_TIME_UTC) in the argument. The seconds and microseconds members + * of the struct are set to zero. + * + * @return psTime*: Struct with empty time. + */ +psTime* psTimeAlloc( + psTimeType type ///< Type of time to create (UTC or TAI). +); + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psTime structure, false otherwise. + */ +bool psMemCheckTime( + psPtr ptr ///< the pointer whose type to check +); + + +/** Get current time. + * + * Gets current time from the system clock. User must specify the psTimeType + * (PS_TIME_TAI or PS_TIME_UTC) in the argument. + * + * @return psTime*: Struct with current time. + */ +psTime* psTimeGetNow( + psTimeType type ///< Type of time to get (UTC or TAI). +); + +/** Convert psTime to UTC, TAI, UT1, or TT time. + * + * Converts psTime to UTC, TAI, UT1, or TT time based on the psTimeType argument. + * + * @return psTime*: Pointer to psTime. + */ +psTime* psTimeConvert( + psTime *time, ///< Time to be converted. + psTimeType type ///< Type to be converted to. +); + +/** Convert psTime to Local Mean Sidereal Time (LMST). + * + * Converts psTime at the given longitude to LMST time. If the input time is not + * in UTC format, then it is converted. + * + * @return double: LST Time. + */ +double psTimeToLMST( + psTime *time, ///< psTime to be converted. + double longitude ///< Longitude. +); + +/** Determine UT1 - UTC from table lookup. + * + * This function is necessary to for various SLALIB functions. + * + * @return double: Time difference. + */ +double psTimeGetUT1Delta( + const psTime *time, ///< psTime to be looked up. + psTimeBulletin bulletin ///< IERS bulletin to use +); + +/** Provides tidal corrections to UT1-UTC. + * + * Uses the Ray model of Simon et al. + * + * @return psTime*: The corrected time in UT1. + */ +psTime *psTime_TideUT1Corr( + const psTime *time ///< psTime to be corrected. +); + +/** Determine TAI - UTC from table lookup. + * + * This function is necessary to for various psTime functions. + * + * @return psF64: Time difference. + */ +psF64 p_psTimeGetTAIDelta( + const psTime *time ///< psTime to be looked up. +); + +/** Determine polar coordinates at a given time. + * + * Determines the orientation of the polar axis at the given time. + * + * @return psSphere*: Spherical coordinates of Earth's polar axias. + */ +psSphere* p_psTimeGetPoleCoords( + const psTime *time ///< psTime determine polar orientation. +); + +/** Calculate the number of leapseconds between two times. + * + * Calculates the number of leapseconds between two times. + * + * @return long: leapseconds added between given times + */ +long psTimeLeapSecondDelta( + const psTime* time1, ///< First input time. + const psTime* time2 ///< Second input time. +); + +/** Determine if UTC time is a leapsecond. + * + * Determines if the specified UTC time is a valid leapsecond. + * + * @return bool: valid leap second + */ +bool psTimeIsLeapSecond( + const psTime* utc ///< UTC to verify if leap second +); + +/** Convert psTime to Julian date time. + * + * Converts psTime to Julian date (JD) time. This function does not add or + * subtract leapseconds. + * + * @return double: Julian Date (JD) time. + */ +double psTimeToJD( + const psTime* time ///< Input time to be converted. +); +/** Convert psTime to modified Julian date time. + * + * Converts psTime to modified Julian date (MJD) time. This function does not + * add or subtract leapseconds. + * + * @return double: Modified Julian Days (MJD) time. + */ +double psTimeToMJD( + const psTime* time ///< Input time to be converted. +); + +/** Convert psTime to ISO8601 formatted string. + * + * Converts psTime to a null terminated string in the form of YYYY-MM-DDThh:mm:ss.sss. + * This function does not add or subtract leapseconds. + * + * @return psString: Pointer null terminated array of chars in ISO time. + */ +psString psTimeToISO( + const psTime* time ///< Input time to be converted. +); + +/** Convert psTime to struct tm time. + * + * Converts psTime to struct tm time. This function should handle + * UTC leapseconds correctly. + * + * @return tm*: tm struct. + */ +struct tm *psTimeToTM( + const psTime* time ///< Input time to be converted. + ); + +/** Convert psTime to timeval time. + * + * Converts psTime to timeval time. This function does not add or subtract leapseconds. + * + * @return timeval*: timeval struct time. + */ +struct timeval* psTimeToTimeval( + const psTime* time ///< Input time to be converted. + ); + +/* + * Convert psTime to tm time. + * + * Converts psTime to tm time. This function is based on a Perl algorithm availble + * in the Pan-STARRS Image processing Algorithm Design Description (ADD). This function + * does not add or subtract leapseconds. + * + * @return tm: tm struct time. + * +struct tm* p_psTimeToTM( + const psTime *time ///< Input time to be converted. + ); +*/ +/** Convert JD to psTime. + * + * Converts JD time to psTime. This function does not add or subtract leapseconds. + * + * @return psTime: time. + */ +psTime* psTimeFromJD( + double jd ///< Input time to be converted. +); + +/** Convert MJD to psTime. + * + * Converts MJD time to psTime. This function does not add or subtract leapseconds. + * + * @return psTime: time. + */ +psTime* psTimeFromMJD( + double mjd ///< Input time to be converted. +); + +/** Convert ISO to psTime. + * + * Converts ISO time to psTime. This function does not add or subtract leapseconds. + * + * @return psTime*: time + */ +psTime* psTimeFromISO( + const char* input, ///< Input time to be converted. + psTimeType type ///< Time type. +); + +/** Convert timeval to psTime. + * + * Converts timeval time to psTime. This function does not add or subtract leapseconds. + * + * @return psTime*: time. + */ +psTime* psTimeFromTimeval( + const struct timeval *input ///< Input time to be converted. +); + +/** Convert Terrestrial Time to psTime + * + * Converts Terrestial Time to psTime. This function assumes resultant time is of type TT. + * + * @return psTime*: time (TT) + */ +psTime* psTimeFromTT( + psS64 sec, ///< Input terrestrial time in seconds + psU32 nsec ///< Input terrestrial time fraction of seconds (nanoseconds) +); + +/** Convert UTC time to psTime + * + * Converts UTC time to psTime. It will verify if time specified is a leapsecond. + * + * @return psTime*: time (UTC)time + */ +psTime* psTimeFromUTC( + psS64 sec, ///< Input time in seconds + psU32 nsec, ///< Input time fraction of seconds (nanoseconds) + bool leapsecond ///< Input time is a leapsecond +); + +/** Convert tm time to psTime. + * + * Converts tm time to psTime. This function is based on a Perl algorithm availble + * in the Pan-STARRS Image processing Algorithm Design Description (ADD). This function + * does not add or subtract leapseconds. + * + * @return psTime*: time. + */ +psTime* psTimeFromTM( + const struct tm *time ///< Input time to be converted. +); + +/** Convert an arbitrary string into a psTime. + * + * Converts a string, using a strptime(3) format, into a psTime. See + * strptime(3) for documentation on this format. + * + * @return psTime*: time. + */ + +psTime* psTimeStrptime( + const char *s, ///< string to be converted + const char *format ///< strptime(3) format +); + +/** Convert a psTime into a formated string. + * + * Converts a psTime, using a strftime(3) format, into a formatted string. + * See strftime(3) for documentation on this format. + * + * @return psString: string. + */ + +psString psTimeStrftime( + const psTime *time, ///< Time to be formatted. + const char *format ///< strftime(3) format +); + +/** Adds delta to time. Result is in TAI time. + * + * Adds delta to time. Input time is converted to TAI format if necessary. + * + * @return psTime*: time. + */ +psTime* psTimeMath( + const psTime *time, ///< Time. + double delta ///< Time delta. +); + +/** Determine difference between two times. Result is in TAI time. + * + * Determine difference between two times. Input times are converted to TAI format if necessary. + * + * @return double: Time difference. + */ +double psTimeDelta( + const psTime *time1, ///< First time. + const psTime *time2 ///< Second time. +); + +/** Searches the IERS time tables for a specified entry location. + * + * Returns the interpolated double precision (arcsec) value at the specified entry + * location. Inputs to specify are the time index in mjd, the column number + * corresponding to Xp, Yp, or Sp (UT1-UTC) in IERS A or B, the time table names, + * and the number of time tables. + * + * @return psF64: Resulting table entry for specified parameters. + */ +psF64 p_psTimeSearchTables( + psF64 index, ///< time index for which to search + psU64 column, ///< column number of specified index + char *metadataTableNames[], ///< names of IERS tables to search + psU32 nTables, ///< number of IERS tables to search + psLookupStatusType* status ///< status of table search +); + +/** Stores the current time in a psHash of timers, under the supplied name. + * + * @return bool: True if successful, otherwise false. + */ +bool psTimerStart( + char *name ///< timer name to start +); + +/** Resets the named timer. + * + * @return psF64: The time elapsed since start. + */ +psF64 psTimerClear( + char *name ///< timer name to clear +); + +/** Returns the elapsed time, in seconds, for the timer specified by name. + * + * @return psF64: The elapsed time in seconds since timer start. + */ +psF64 psTimerMark( + char *name ///< timer name to mark +); + +/** Frees all memory associated with all timers and returns the expended time. + * + * @return psF64: The maximum time expended. + */ +bool psTimerStop(void); + +/** Copy a psTime. + * + * @return psTime*: New copy of existing psTime. + */ +psTime *psTimeCopy( + const psTime *inTime ///< input time to copy. +); + +/// @} + +#endif // #ifndef PSTIME_H Index: /branches/rel-1-1/psLib/src/db/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/db/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/db/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/db/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/db/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/db/Makefile.am (revision 12167) @@ -0,0 +1,14 @@ +#Makefile for db functions of psLib +# +noinst_LTLIBRARIES = libpslibdb.la + +libpslibdb_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(MYSQL_CFLAGS) +libpslibdb_la_SOURCES = \ + psDB.c + +EXTRA_DIST = db.i + +pkginclude_HEADERS = \ + psDB.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/db/db.i =================================================================== --- /branches/rel-1-1/psLib/src/db/db.i (revision 12167) +++ /branches/rel-1-1/psLib/src/db/db.i (revision 12167) @@ -0,0 +1,2 @@ +/* db headers */ +%include "psDB.h" Index: /branches/rel-1-1/psLib/src/db/psDB.c =================================================================== --- /branches/rel-1-1/psLib/src/db/psDB.c (revision 12167) +++ /branches/rel-1-1/psLib/src/db/psDB.c (revision 12167) @@ -0,0 +1,2551 @@ +/** @file psDB.c + * + * -*- mode: C; c-basic-indent: 4; tab-width: 8; indent-tabs-mode: nil -*- + * vim: set cindent ts=8 sw=4 expandtab: + * + * @brief database functions + * + * This file contains functions that perform basic database operations. MySQL + * 4.1.2 or newer is required. + * + * @author Aaron Culliney + * @author Joshua Hoblitt + * + * @version $Revision: 1.136 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-03-01 03:57:08 $ + * + * Copyright (C) 2005-2006 Joshua Hoblitt, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#ifdef HAVE_PSDB + +#include +#include +#include +#include +#undef __STRICT_ANSI__ +#include +#define __STRICT_ANSI__ +#include +#include +#include +#include // enum_field_types + +#include "psDB.h" +#include "psMemory.h" +#include "psAssert.h" +#include "psAbort.h" +#include "psError.h" +#include "psString.h" +#include "psTrace.h" +#include "psMetadataConfig.h" + + +// set the pointer to NULL if we are actually freeing the memory +#define PSDB_NULL_FREE(ptr) \ +if (psMemGetRefCounter(ptr) == 1) { \ + psFree(ptr); \ + ptr = NULL; \ +} else { \ + psFree(ptr); \ +} + +typedef struct +{ + enum enum_field_types type; + bool isUnsigned; +} +mysqlType; + +typedef struct +{ + MYSQL_BIND *bind; + psU32 n; +} +psDBMysqlRow; + +static pthread_mutex_t lookupTableMutex = PTHREAD_MUTEX_INITIALIZER; +static psHash *pTypeToSQLlookupTable = NULL; +static psHash *sqlToPTypeLookupTable = NULL; +static psHash *mysqlToSqlLookupTable = NULL; +static psHash *pTypeToMysqlLookupTable = NULL; + +// free func +static void psDBFree(psDB *dbh); + +// database utility functions +static inline bool psDBPackMySQLRow(psDBMysqlRow *mysqlRow, const psMetadata *values); +static psDBMysqlRow *psDBMysqlRowAlloc(psU32 paramCount); +static void psDBMysqlRowFree(psDBMysqlRow *row); +static void psDBMysqlRowRecycle(psDBMysqlRow *mysqlRow); + +// SQL generation functions +static psString psDBGenerateCreateTableSQL(const char *tableName, const psMetadata *where); +static psString psDBGenerateSelectRowSQL(const char *tableName, const char *col, + const psMetadata *where, psU64 limit); +static psString psDBGenerateInsertRowSQL(const char *tableName, const psMetadata *row); +static psString psDBGenerateUpdateRowSQL(const char *tableName, const psMetadata *where, + const psMetadata *values); +static psString psDBGenerateDeleteRowSQL(const char *tableName, const psMetadata *where, + unsigned long long limit); +static psString psDBGenerateSetSQL(const psMetadata *set + ); +static char *psDBGenerateConditionalSQL(const psMetadataItem *item, const char *tableName); + +// lookup table functions +static psElemType psDBMySQLToPType(enum enum_field_types type, unsigned int flags); +static psString psDBPTypeToSQL(psElemType pType); +static mysqlType *psDBPTypeToMySQL(psElemType pType); + +static psHash *psDBPTypeToSQLTableSetup(void); +static psHash *psDBPTypeToSQLTableGet(void); +static void psDBPTypeToSQLTableCleanup(void); + +static psHash *psDBSQLToPTypeTableSetup(void); +static psHash *psDBSQLToPTypeTableGet(void); +static void psDBSQLToPTypeTableCleanup(void); + +static psHash *psDBMySQLToSQLTableSetup(void); +static psHash *psDBMySQLToSQLTableGet(void); +static void psDBMySQLToSQLTableCleanup(void); + +static psHash *psDBPTypeToMySQLTableSetup(void); +static psHash *psDBPTypeToMySQLTableGet(void); +static void psDBPTypeToMySQLTableCleanup(void); + +static psPtr psDBMySQLTypeAlloc(enum enum_field_types type, bool isUnsigned); +static void psDBAddToLookupTable(psHash *lookupTable, psU32 type, const char *string); +static void psDBAddVoidToLookupTable(psHash *lookupTable, psU32 type, psPtr value); +static psErrorCode mysqlTopsErr(MYSQL *mysql); + +// pType utility functions +static psPtr psDBGetPTypeNaN(psElemType pType); +static bool psDBIsPTypeNaN(psElemType pType, psPtr data); + +// public functions +/*****************************************************************************/ + +psDB *psDBAlloc(const char *host, + const char *user, + const char *passwd, + const char *dbname, + unsigned int port) +{ + MYSQL *mysql; + psDB *dbh; + + mysql = mysql_init(NULL); + if (!mysql) { + psAbort("mysql_init(), out of memory."); + } + + // without this call we won't pick up anything from my.cnf + mysql_options(mysql, MYSQL_READ_DEFAULT_GROUP, "client"); + + // Connect to host and mySql server with specified database + if (!mysql_real_connect(mysql, host, user, passwd, dbname, port, NULL, 0)) { + psError(mysqlTopsErr(mysql), true, + _("Failed to connect to database. Error: %s"),mysql_error(mysql)); + + mysql_close(mysql); + + return NULL; + } + + dbh = psAlloc(sizeof(psDB)); + + dbh->mysql = mysql; + + // explicit transactions default to false + if (!psDBExplicitTrans(dbh, false)) { + psError(mysqlTopsErr(dbh->mysql), true, + "failed to set transaction type. Error: %s", mysql_error(mysql)); + + mysql_close(mysql); + psFree(dbh); + + return NULL; + } + + if (psMemGetThreadSafety()) { + pthread_mutex_lock(&lookupTableMutex); + + // psDBPTypeToSQLTableSetu must be run first + psDBPTypeToSQLTableSetup(); + psDBSQLToPTypeTableSetup(); + psDBMySQLToSQLTableSetup(); + psDBPTypeToMySQLTableSetup(); + + pthread_mutex_unlock(&lookupTableMutex); + } else { + // psDBPTypeToSQLTableSetu must be run first + psDBPTypeToSQLTableSetup(); + psDBSQLToPTypeTableSetup(); + psDBMySQLToSQLTableSetup(); + psDBPTypeToMySQLTableSetup(); + } + + // don't set the deallocator func until after we've setup the lookup tables + // so an alloc error doesn't try to free potentionally uncreated tables + psMemSetDeallocator(dbh, (psFreeFunc) psDBFree); + + psTrace("psLib.db", PS_LOG_INFO, "connected to database %s", dbname); + + return dbh; +} + +static void psDBFree(psDB *dbh) +{ + // quietly handle NULLs + if (!dbh) { + return; + } + + // Attempt to close specified database connection + mysql_close(dbh->mysql); + + // ASC WARNING NOTE: the psDBSQLToPTypeTableCleanup cleanup routine + // needs to be called first because it refers to + // psDBPTypeToSQLTableGet ... + // + // The *cleanup functions should be thread safe as they just call psFree() + // but we don't want to be cleaning up & setting up at the same time + if (psMemGetThreadSafety()) { + pthread_mutex_lock(&lookupTableMutex); + + psDBSQLToPTypeTableCleanup(); + psDBMySQLToSQLTableCleanup(); + psDBPTypeToSQLTableCleanup(); + psDBPTypeToMySQLTableCleanup(); + + pthread_mutex_unlock(&lookupTableMutex); + } else { + psDBSQLToPTypeTableCleanup(); + psDBMySQLToSQLTableCleanup(); + psDBPTypeToSQLTableCleanup(); + psDBPTypeToMySQLTableCleanup(); + } + + psTrace("psLib.db", PS_LOG_INFO, "disconnected"); +} + +bool psDBCreate(psDB *dbh, + const char *dbname) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(dbname, false); + + psString query = NULL; + psStringAppend(&query, "CREATE DATABASE %s", dbname); + + // the MySQL C API notes that mysql_create_db() is deprecated + bool status = p_psDBRunQuery(dbh, query); + if (!status) { + psError(PS_ERR_UNKNOWN, false, "Failed to create new database."); + } + + psFree(query); + + psTrace("psLib.db", PS_LOG_INFO, "created a database named %s", dbname); + + return status; +} + +bool psDBChange(psDB *dbh, + const char *dbname) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(dbname, false); + + // Attempt to select new database + if (mysql_select_db(dbh->mysql, dbname) != 0) { + psError(mysqlTopsErr(dbh->mysql), true, _("Failed to change database. Error: %s"), + mysql_error(dbh->mysql)); + + return false; + } + + psTrace("psLib.db", PS_LOG_INFO, "changed to using database %s", dbname); + + return true; +} + +bool psDBDrop(psDB *dbh, + const char *dbname) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(dbname, false); + + char *query = NULL; + psStringAppend(&query, "DROP DATABASE %s", dbname); + + // the MySQL C API notes that mysql_drop_db() is deprecated + bool status = p_psDBRunQuery(dbh, query); + if (!status) { + psError(PS_ERR_UNKNOWN, false, "Failed to drop database."); + } + + psFree(query); + + psTrace("psLib.db", PS_LOG_INFO, "dropped database %s", dbname); + + return status; +} + +bool psDBCreateTable(psDB *dbh, + const char *tableName, + const psMetadata *md) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + PS_ASSERT_PTR_NON_NULL(md, false); + + // Generate SQL query string + psString query = psDBGenerateCreateTableSQL(tableName, md); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("Query generation failed.")); + return false; + } + + // Run SQL query to create table + bool status = p_psDBRunQuery(dbh, query); + if (!status) { + psError(PS_ERR_UNKNOWN, false, _("Failed to create table.")); + } + + psFree(query); + + psTrace("psLib.db", PS_LOG_INFO, "created table %s", tableName); + + return status; +} + +bool psDBDropTable(psDB *dbh, + const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + + // Create SQL command string to drop table + psString query = NULL; + psStringAppend(&query, "DROP TABLE %s", tableName); + + // Execute query + bool status = p_psDBRunQuery(dbh, query); + if (!status) { + psError(PS_ERR_UNKNOWN, false, _("Failed to drop table.")); + } + + psFree(query); + + psTrace("psLib.db", PS_LOG_INFO, "dropped table %s", tableName); + + return status; +} + +psArray *psDBSelectColumn(psDB *dbh, + const char *tableName, + const char *col, + unsigned long long limit) +{ + PS_ASSERT_PTR_NON_NULL(dbh, NULL); + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + PS_ASSERT_PTR_NON_NULL(col, NULL); + + MYSQL_RES *result; // complete db result set + MYSQL_ROW row; // single row of db result set + my_ulonglong rowCount; // number of rows in db result set + unsigned long dataSize; // size of field + unsigned int fieldCount; // number of fields in db result set + psArray *column = NULL; // return array + psPtr data; // copy of result field + + // Generate SQL query string + psString query = psDBGenerateSelectRowSQL(tableName, col, NULL, limit); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("Query generation failed.")); + return NULL; + } + + // Execut SQL query string + if (!p_psDBRunQuery(dbh, query)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to select column.")); + psFree(query); + return NULL; + } + psFree(query); + + // Obtain query result and check for no data condition + result = mysql_store_result(dbh->mysql); + + if (!result) { + // no result set + fieldCount = mysql_field_count(dbh->mysql); + + // if field count is zero the query returned no data. If it's non-zero + // then something bad has happened. + if (fieldCount != 0) { + psError(mysqlTopsErr(dbh->mysql), true, _("Query returned no data. Error: %s"), + mysql_error(dbh->mysql)); + return NULL; + } + } + + // Get number of rows returned in result + rowCount = mysql_num_rows(result); + // XXX has mysql's semantics changed? If this is zero then why was a + // result set returned? + if (!rowCount) { + mysql_free_result(result); + return NULL; + } + + // pre-allocate enough elements to hold the complete result set + // then reset n to 0 so elements are added from the beginning of + // the array + column = psArrayAllocEmpty(rowCount); + + // Fetch each result + while ((row = mysql_fetch_row(result))) { + // get the first element of lengths array that is part of the + // result set + dataSize = *(mysql_fetch_lengths(result)); + + // represent NULL as an empty string + if (row[0] == NULL) { + data = psStringCopy(""); + } else { + data = psAlloc(dataSize+1); + memcpy(data, row[0], dataSize); + ((char*)data)[dataSize] = '\0'; + } + + // add field to return array + psArrayAdd(column, 0, data); + psFree(data); + } + + // Clean up mysql memory + mysql_free_result(result); + + return column; +} + +// dest = assign to, source = source string psArray, conv = conversion function, +// type = type to cast to, pType = psElemType +#define PS_STR_ARRAY_TO_PTYPE(dest, source, conv, type, pType) \ +{ \ + psPtr myNaN; \ + int i; \ + \ + for (i = 0; i < source->n; i++) { \ + if (strlen(source->data[i])) { \ + dest[i] = (type)conv(source->data[i]); \ + } else { \ + myNaN = psDBGetPTypeNaN(pType); \ + dest[i] = *(type *)myNaN; \ + psFree(myNaN); \ + } \ + } \ +} + +psVector *psDBSelectColumnNum(psDB *dbh, + const char *tableName, + const char *col, + psElemType type, + unsigned long long limit) +{ + PS_ASSERT_PTR_NON_NULL(dbh, NULL); + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + PS_ASSERT_PTR_NON_NULL(col, NULL); + + psArray *stringColumn = psDBSelectColumn(dbh, tableName, col, limit); + if (!stringColumn) { + // could be an error or the result set was just empty + return NULL; + } + + psVector *column = psVectorAlloc(stringColumn->n, type); + + // conversion functions are a portability issue + switch (type) { + case PS_DATA_S8: + PS_STR_ARRAY_TO_PTYPE(column->data.S8, stringColumn, atoi, psS8, PS_DATA_S8); + break; + case PS_DATA_S16: + PS_STR_ARRAY_TO_PTYPE(column->data.S16, stringColumn, atoi, psS16, PS_DATA_S16); + break; + case PS_DATA_S32: + PS_STR_ARRAY_TO_PTYPE(column->data.S32, stringColumn, atoi, psS32, PS_DATA_S32); + break; + case PS_DATA_S64: + PS_STR_ARRAY_TO_PTYPE(column->data.S64, stringColumn, atoll, psS64, PS_DATA_S64); + break; + case PS_DATA_U8: + PS_STR_ARRAY_TO_PTYPE(column->data.U8, stringColumn, atoi, psU8, PS_DATA_U8); + break; + case PS_DATA_U16: + PS_STR_ARRAY_TO_PTYPE(column->data.U16, stringColumn, atoi, psU16, PS_DATA_U16); + break; + case PS_DATA_U32: + PS_STR_ARRAY_TO_PTYPE(column->data.U32, stringColumn, atoi, psU32, PS_DATA_U32); + break; + case PS_DATA_U64: + PS_STR_ARRAY_TO_PTYPE(column->data.U64, stringColumn, atoll, psU64, PS_DATA_U64); + break; + case PS_DATA_F32: + PS_STR_ARRAY_TO_PTYPE(column->data.F32, stringColumn, atof, psF32, PS_DATA_F32); + break; + case PS_DATA_F64: + PS_STR_ARRAY_TO_PTYPE(column->data.F64, stringColumn, atof, psF64, PS_DATA_F64); + break; + case PS_TYPE_C32: + // this is a bogus SQL type + PS_STR_ARRAY_TO_PTYPE(column->data.C32, stringColumn, atof, psC32, PS_TYPE_C32); + break; + case PS_TYPE_C64: + // this is a bogus SQL type + PS_STR_ARRAY_TO_PTYPE(column->data.C64, stringColumn, atof, psC64, PS_TYPE_C64); + break; + case PS_DATA_BOOL: + // valid for psVector? + PS_STR_ARRAY_TO_PTYPE(column->data.U8, stringColumn, atoi, psU8, PS_DATA_U8); + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Invalid type specified in psDBSelectColumnNum.\n"); + psFree(stringColumn); + psFree(column); + return NULL; + break; + } + + psFree(stringColumn); + + return column; +} + +psArray *psDBSelectRows(psDB *dbh, + const char *tableName, + const psMetadata *where, + unsigned long long limit) +{ + PS_ASSERT_PTR_NON_NULL(dbh, NULL); + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + + // Create select row query + psString query = psDBGenerateSelectRowSQL(tableName, NULL, where, limit); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Query generation failed."); + return NULL; + } + + // Run SQL query + if (!p_psDBRunQuery(dbh, query)) { + psError(PS_ERR_UNKNOWN, false, "Query execution failed."); + psFree(query); + return NULL; + } + psFree(query); + + // return the result + return p_psDBFetchResult(dbh); +} + +bool psDBInsertOneRow(psDB *dbh, + const char *tableName, + const psMetadata *row) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + PS_ASSERT_PTR_NON_NULL(row, false); + + // Create array to store single row + psArray *rowSet = psArrayAllocEmpty(1); + psArrayAdd(rowSet, 0, (psPtr)row); + + // Execute function to insert rows + if (!psDBInsertRows(dbh, tableName, rowSet)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to insert row.")); + psFree(rowSet); + return false; + } + + psFree(rowSet); + + return true; +} + +bool psDBInsertRows(psDB *dbh, + const char *tableName, + const psArray *rowSet) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + PS_ASSERT_PTR_NON_NULL(rowSet, false); + + // we are assuming that all rows in the set have an identical with reguard + // to field count and type + psMetadata *row = rowSet->data[0]; + + // Generate SQL query string + psString query = psDBGenerateInsertRowSQL(tableName, row); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("Query generation failed.")); + return false; + } + + if (p_psDBRunQueryPrepared(dbh, rowSet, query) < 0) { + psError(PS_ERR_UNEXPECTED_NULL, false, "insert failed"); + psFree(query); + return false; + } + + psFree(query); + + return true; +} + +psArray *psDBDumpRows(psDB *dbh, + const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + + return psDBSelectRows(dbh, tableName, NULL, 0); +} + +psMetadata *psDBDumpCols(psDB *dbh, + const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(tableName, false); + + MYSQL_RES *result; + MYSQL_FIELD *field; + unsigned int fieldCount; + psU32 pType; + unsigned int i; + psPtr column; + + // find column types + result = mysql_list_fields(dbh->mysql, tableName, NULL); + if (!result) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Failed to retrieve column types."); + } + + field = mysql_fetch_fields(result); + fieldCount = mysql_num_fields(result); + + // this metadata is returned + psMetadata *table = psMetadataAlloc(); + + // fetch each column and load into psMetadata + for (i =0; i < fieldCount; i++) { + // find ptype of column + pType = psDBMySQLToPType(field[i].type, field[i].flags); + if (!pType) { + psError(PS_ERR_UNKNOWN, false, "Failed to lookup type."); + psFree(table); + mysql_free_result(result); + return NULL; + } + //psLogMsg( __func__, PS_LOG_INFO, "pType=[%ld]\n", pType ); + + // if the ptype is PS_DATA_PTR assume that it's a string and fetch the + // column as an psArray of strings; otherwise fetch the column as a + // psVector. + if (pType == PS_DATA_STRING) { + // PS_DATA_UNKNOWN -> PS_DATA_ARRAY ? + column = psDBSelectColumn(dbh, tableName, field[i].name, 0); + psMetadataAddArray(table, PS_LIST_TAIL, field[i].name, 0, "", column); + // psMetadataAddStr(table, PS_LIST_TAIL, field[i].name, "", column); + psFree(column); + } else { + column = psDBSelectColumnNum(dbh, tableName, field[i].name, pType, 0); + psMetadataAddVector(table, PS_LIST_TAIL, field[i].name, 0, "", column); + psFree(column); + } + } + + // Clean up mysql memory + mysql_free_result(result); + + return table; +} + +long psDBUpdateRows(psDB *dbh, + const char *tableName, + const psMetadata *where, + psMetadata *values) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + PS_ASSERT_PTR_NON_NULL(tableName, -1); + PS_ASSERT_PTR_NON_NULL(values, -1); + + // Generate SQL query to update row + psString query = psDBGenerateUpdateRowSQL(tableName, where, values); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("Query generation failed.")); + return -1; + } + + psArray *rowData = psArrayAllocEmpty(1); + psArrayAdd(rowData, 0, values); + long rowsAffected = p_psDBRunQueryPrepared(dbh, rowData, query); + psFree(rowData); + psFree(query); + if (rowsAffected < 0) { + psError(PS_ERR_UNEXPECTED_NULL, false, "update failed"); + return -1; + } + + return rowsAffected; +} + +long psDBDeleteRows(psDB *dbh, + const char *tableName, + const psMetadata *where, + unsigned long long limit) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + PS_ASSERT_PTR_NON_NULL(tableName, -1); + + // Create SQL statement string + psString query = psDBGenerateDeleteRowSQL(tableName, where,limit); + if (!query) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Query generation failed."); + return -1; + } + + // Run SQL query + if (!p_psDBRunQuery(dbh, query)) { + psError(PS_ERR_UNKNOWN, false, "Delete failed."); + mysql_rollback(dbh->mysql); + psFree(query); + return -1; + } + psFree(query); + + // Get the number of affected row for the delete command + psS64 rows = (psS64)mysql_affected_rows(dbh->mysql); + + return rows; +} + +long long psDBLastInsertID(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + + psTrace("psLib.db", PS_LOG_INFO, "calling myql_insert_id()"); + + // XXX return type is actually my_ulonglong - should the return be psU64? + return (long)mysql_insert_id(dbh->mysql); +} + +bool psDBExplicitTrans(psDB *dbh, bool mode) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + + psTrace("psLib.db", PS_LOG_INFO, "calling mysql_autocommit(): %u", !mode); + + // mode needs to be inverted as autocommits are the opposide of explicit + // transactions. + // the return value also needs to be inverted for the same reason. + // is it safe to assume my_bool always safely casts to bool? + return !(bool)mysql_autocommit(dbh->mysql, !mode); +} + +bool psDBTransaction(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + + bool status = p_psDBRunQuery(dbh, "START TRANSACTION"); + if (!status) { + psError(PS_ERR_UNKNOWN, false, "Failed to start a new transaction."); + } + + return status; +} + +bool psDBCommit(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + + psTrace("psLib.db", PS_LOG_INFO, "calling myql_commit()"); + + // is it safe to assume my_bool always safely casts to bool? + // mysql_commit - Zero if successful. Non-zero if an error occurred. + return !(bool)mysql_commit(dbh->mysql); +} + +bool psDBRollback(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + + psTrace("psLib.db", PS_LOG_INFO, "calling myql_rollback()"); + + // is it safe to assume my_bool always safely casts to bool? + // mysql_rollback - Zero if successful. Non-zero if an error occurred. + return !(bool)mysql_rollback(dbh->mysql); +} + +psU64 psDBAffectedRows(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, (psU64)-1); + + // mysql_affected_rows() returns (my_ulonglong)-1 on error + return (psU64)mysql_affected_rows(dbh->mysql); +} + +// database utility functions +/*****************************************************************************/ + +bool p_psDBRunQuery(psDB *dbh, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(dbh, false); + PS_ASSERT_PTR_NON_NULL(format, false); + + psString query = NULL; + + // Run query + va_list ap; + va_start(ap, format); + psStringAppendV(&query, format, ap); + va_end(ap); + + psTrace("psLib.db", PS_LOG_INFO, "Executing SQL: %s", query); + + if (mysql_real_query(dbh->mysql, query, (unsigned long)strlen(query)) !=0) { + psError(mysqlTopsErr(dbh->mysql), true, _("Failed to execute SQL query. Error: %s"), mysql_error(dbh->mysql)); + psFree(query); + return false; + } + + psFree(query); + + return true; +} + +long p_psDBRunQueryPrepared(psDB *dbh, + const psArray *rowSet, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(dbh, -1); + PS_ASSERT_PTR_NON_NULL(rowSet, -1); + PS_ASSERT_PTR_NON_NULL(format, -1); + + psString query = NULL; + + // generate query string + va_list ap; + va_start(ap, format); + psStringAppendV(&query, format, ap); + va_end(ap); + + psTrace("psLib.db", PS_LOG_INFO, "Executing SQL: %s", query); + + // Prepare SQL statement + MYSQL_STMT *stmt = mysql_stmt_init(dbh->mysql); + if (!stmt) { + psAbort("mysql_stmt_init(), out of memory."); + } + if (mysql_stmt_prepare(stmt, query, (unsigned long)strlen(query))) { + psError(PS_ERR_UNKNOWN, true, "Failed to prepare query. Error: %s", mysql_stmt_error(stmt)); + mysql_stmt_close(stmt); + psFree(query); + return -1; + } + + psFree(query); + + // how many place holders are in our query + psS32 paramCount = mysql_stmt_param_count(stmt); + + // structure large enough to hold one field of data per place holder + psDBMysqlRow *mysqlRow = psDBMysqlRowAlloc(paramCount); + + // loop over rows + for (long j = 0; j < rowSet->n; j++) { + psMetadata *rowData = rowSet->data[j]; + + if (!psDBPackMySQLRow(mysqlRow, rowData)) { + psError(PS_ERR_UNKNOWN, false, "Failed to pack params into bind structure."); + + psFree(mysqlRow); + mysql_stmt_close(stmt); + + return -1; + } + + if (mysql_stmt_bind_param(stmt, mysqlRow->bind)) { + psError(PS_ERR_UNKNOWN, true, "Failed to bind params. Error: %s", mysql_stmt_error(stmt)); + + psFree(mysqlRow); + mysql_stmt_close(stmt); + + return -1; + } + + if (mysql_stmt_execute(stmt)) { + psError(PS_ERR_UNKNOWN, true, "Failed to execute prepared statement. Error: %s", mysql_stmt_error(stmt)); + + psFree(mysqlRow); + mysql_stmt_close(stmt); + + return -1; + } + + // free temporary buffers + psDBMysqlRowRecycle(mysqlRow); + + } // end loop over rows + + psFree(mysqlRow); + + // FYI mysql_stmt_affected_rows() must be called before a commit + long rowsAffected = mysql_stmt_affected_rows(stmt); + + mysql_stmt_close(stmt); + + return rowsAffected; +} + +psArray *p_psDBFetchResult(psDB *dbh) +{ + PS_ASSERT_PTR_NON_NULL(dbh, NULL); + + MYSQL_RES *result; // complete db result set + MYSQL_ROW row; // single row of db result set + MYSQL_FIELD *field; // field type info + my_ulonglong rowCount; // number of rows in db result set + unsigned int fieldCount; // number of fields in db result set + unsigned long *fieldLength; // field sizes + long len; // field length + psArray *resultSet; // return array + int i; // field index + psMetadata *md; // a row + psU32 pType; // psElemType of a field + psPtr data; // copy of result field + + result = mysql_store_result(dbh->mysql); + if (!result) { + // no result set + fieldCount = mysql_field_count(dbh->mysql); + + // if field count is zero the query should have returned no data. If + // it's non-zero then something bad has happened. + if (fieldCount != 0) { + psError(mysqlTopsErr(dbh->mysql), true, "Query returned no data. Error: %s", mysql_error(dbh->mysql)); + + return NULL; + } + } + + rowCount = mysql_num_rows(result); + // XXX has mysql's semantics changed? If this is zero then why was a + // result set returned? + if (rowCount == 0) { + mysql_free_result(result); + // occording to popular opinion a query that succeeds but returns no + // data should return an empty array -- this is somewhat inefficent -JH + return psArrayAlloc(0); + } + + // pre-allocate enough elements to hold the complete result set + // then reset n to 0 so elements are added from the beginning of + // the array + resultSet = psArrayAllocEmpty(rowCount); + + field = mysql_fetch_fields(result); + fieldCount = mysql_num_fields(result); + + psTrace("psLib.db", PS_LOG_INFO, "query returned %lld rows with %d fields", rowCount, fieldCount); + + while ((row = mysql_fetch_row(result))) { + // allocate new psMetadata to represent a row + md = psMetadataAlloc(); + + fieldLength = mysql_fetch_lengths(result); + + for (i = 0; i < fieldCount; i++) { + // lookup MySQL column type + pType = psDBMySQLToPType(field[i].type, field[i].flags); + if (!pType) { + psError(PS_ERR_UNKNOWN, false, "Failed to lookup type."); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + + len = fieldLength[i]; + if (len) { + // copy the data out of the result set struct + data = psAlloc(len + 1); + memcpy(data, row[i], len); + ((char*)data)[len] = '\0'; + } else { + // if len is zero then the value is NULL + psTrace("psLib.db", PS_LOG_INFO, "database field name %s contains a NULL", field[i].name); + data = psDBGetPTypeNaN(pType); + if (!psMetadataAdd(md, PS_LIST_TAIL, field[i].name, pType, "", data)) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + psFree(data); + continue; + } + + switch (pType) { + case PS_DATA_STRING: + if (!psMetadataAddStr(md, PS_LIST_TAIL, field[i].name, 0, "", data)) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_U8: + if (!psMetadataAddU8(md, PS_LIST_TAIL, field[i].name, 0, "",(psU8)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_U16: + if (!psMetadataAddU16(md, PS_LIST_TAIL, field[i].name, 0, "",(psU16)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_U32: + if (!psMetadataAddU32(md, PS_LIST_TAIL, field[i].name, 0, "",(psU32)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_U64: + if (!psMetadataAddU64(md, PS_LIST_TAIL, field[i].name, 0, "",(psU64)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_S8: + if (!psMetadataAddS8(md, PS_LIST_TAIL, field[i].name, 0, "", (psS8)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_S16: + if (!psMetadataAddS16(md, PS_LIST_TAIL, field[i].name, 0, "", (psS16)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_S32: + if (!psMetadataAddS32(md, PS_LIST_TAIL, field[i].name, 0, "", (psS32)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_S64: + if (!psMetadataAddS64(md, PS_LIST_TAIL, field[i].name, 0, "", (psS64)atoll(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_F32: + if (!psMetadataAddF32(md, PS_LIST_TAIL, field[i].name, 0, "", atof(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_F64: + if (!psMetadataAddF64(md, PS_LIST_TAIL, field[i].name, 0, "", atof(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_BOOL: + if (!psMetadataAdd(md, PS_LIST_TAIL, field[i].name, pType, "", atoi(data))) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + break; + case PS_DATA_TIME: + // just pass NULL values through as there is currently no + // concept of a psTime with a NULL value + if (!(char *)data) { + if (!psMetadataAddTime(md, PS_LIST_TAIL, field[i].name, 0, "", NULL)) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + } else { + psTime *time = psTimeStrptime((char *)data, "%EY-%m-%d%t%T"); + if (!time) { + psError(PS_ERR_UNKNOWN, true, "error parsing MySQL DateTime string"); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + if (!psMetadataAddTime(md, PS_LIST_TAIL, field[i].name, 0, "", time)) { + psError(PS_ERR_UNKNOWN, false, "Failed to add item %s", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + psFree(time); + } + break; + #if 0 + // this is the procedure needed for stmt + MYSQL_TIME *myTime = (MYSQL_TIME *)&data; + // convert MYSQL_TIME to struct tm + struct tm tmTime; + tmTime.tm_year = (int)myTime->year - 1900; + tmTime.tm_mon = (int)myTime->month - 1; + tmTime.tm_mday = (int)myTime->day; + tmTime.tm_hour = (int)myTime->hour; + tmTime.tm_min = (int)myTime->minute; + tmTime.tm_sec = (int)myTime->second; + // assume for the time being that we don't have negative time + //(bool)myTime->neg + // currently unused by mysql nor does struct tm support it + // (unsigned long)myTime->second_part; + psTime *time = psTimeFromTM(&tmTime); + psMetadataAddTime(md, PS_LIST_TAIL, field[i].name, 0, "", + time); + psFree(time); + #endif + + default: + psError(PS_ERR_BAD_PARAMETER_TYPE , true, + "field name: %s FIXME: Only type of " + "PS_DATA_U8 (PS_DATA_U8), " + "PS_DATA_U16 (PS_DATA_U16), " + "PS_DATA_U32 (PS_DATA_U32), " + "PS_DATA_U64 (PS_DATA_U64), " + "PS_DATA_S8 (PS_DATA_S8), " + "PS_DATA_S16 (PS_DATA_S16), " + "PS_DATA_S32 (PS_DATA_S32), " + "PS_DATA_S64 (PS_DATA_S64), " + "PS_DATA_F32 (PS_DATA_F32), " + "PS_DATA_F64 (PS_DATA_F64), " + "PS_DATA_BOOL (PS_DATA_BOOL), " + "PS_DATA_STRING " + "and PS_DATA_TIME are supported.", field[i].name); + psFree(data); + psFree(md); + mysql_free_result(result); + psFree(resultSet); + return NULL; + } + + psFree(data); + } + + if (psTraceGetLevel("psLib.db") >= PS_LOG_INFO) { + psString rowString = psMetadataConfigFormat(md); + psTrace("psLib.db", PS_LOG_INFO, "adding row to result set: %s", rowString); + psFree(rowString); + } + + // add row to result set + psArrayAdd(resultSet, 0, md); + psFree(md); + } + + mysql_free_result(result); + + + return resultSet; +} + +static inline bool psDBPackMySQLRow(psDBMysqlRow *mysqlRow, + const psMetadata *values) +{ + PS_ASSERT_PTR_NON_NULL(mysqlRow, false); + PS_ASSERT_PTR_NON_NULL(values, false); + + mysqlType *mType; // type tmp variable + static bool isNull = true; // used in a MYSQL_BIND to indicate NULL + + MYSQL_BIND *bind = mysqlRow->bind; + + // row iterator + // check size of values == paramCount ? + psListIterator *cursor = psListIteratorAlloc(values->list, 0, false); + + // loop over fields + psMetadataItem *item = NULL; // field in row + for (psU32 i = 0; (item = psListGetAndIncrement(cursor)); i++) { + // lookup pType -> mysql type + mType = psDBPTypeToMySQL(item->type); + + bind[i].buffer_type = mType->type; + bind[i].is_unsigned = mType->isUnsigned; + + psFree(mType); + + // input data length is determined by the MYSQL_TYPE_* unless it's a + // string + switch (item->type) { + case PS_DATA_U8: { + bind[i].length = 0; + bind[i].buffer = &item->data.U8; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.U8) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_U16: { + bind[i].length = 0; + bind[i].buffer = &item->data.U16; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.U16) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_U32: { + bind[i].length = 0; + bind[i].buffer = &item->data.U32; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.U32) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_U64: { + bind[i].length = 0; + bind[i].buffer = &item->data.U64; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.U64) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_S8: { + bind[i].length = 0; + bind[i].buffer = &item->data.S8; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.S8) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_S16: { + bind[i].length = 0; + bind[i].buffer = &item->data.S16; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.S16) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_S32: { + bind[i].length = 0; + bind[i].buffer = &item->data.S32; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.S32) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_S64: { + bind[i].length = 0; + bind[i].buffer = &item->data.S64; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.S64) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_F32: { + bind[i].length = 0; + bind[i].buffer = &item->data.F32; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.F32) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_F64: { + bind[i].length = 0; + bind[i].buffer = &item->data.F64; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.F64) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_BOOL: { + // XXX: ASC HACK NOTE (2005/06/03): set extreme bytes to the + // boolean character value. sizeof(bool)==4 which triggers + // an endianess issue in the MySQL conversion (reading only 1 + // byte), on Macintosh hardware (and maybe others?) + unsigned int c = (unsigned int)item->data.B; + item->data.S32 = (unsigned int)((c<<24) | c); + bind[i].length = 0; + bind[i].buffer = &item->data.B; + bind[i].is_null = psDBIsPTypeNaN(item->type, &item->data.B) + ? (my_bool *)&isNull + : NULL; + break; + } + case PS_DATA_STRING: { + // convert NaNs to NULL and set the buffer_length for strings + + if (item->data.str) { + // will handle the case of "" as a NULL database value + bind[i].buffer_length = (unsigned long)strlen(item->data.str); + bind[i].length = &bind[i].buffer_length; + bind[i].buffer = psStringCopy(item->data.V); + bind[i].is_null = *item->data.str == '\0' + ? (my_bool *)&isNull + : NULL; + } else { + // handles the case of NULL as a NULL database value + bind[i].buffer_length = 0; + bind[i].length = &bind[i].buffer_length; + bind[i].buffer = NULL; + bind[i].is_null = (my_bool *)&isNull; + } + break; + } + case PS_DATA_TIME: { + // XXX we're abusing the comment field of the metadata item + // here as we need to have a buffer that exists outside this + // functions scope without leaking memory make a copy of the + // psTime so we don't modify user data when we try to do the + // conversion + if (item->data.str) { + psTime *time = (psTime *)item->data.V; + struct tm *tmTime = psTimeToTM(time); + if (!tmTime) { + psError(PS_ERR_UNKNOWN, false, _("failed to convert psTime to struct tm")); + psFree(cursor); + + return false; + } + + // XXX it wouldn't hurt to make this conversion it's own + // function myTime is used as the 'buffer' so it doesn't + // have to be free'd + MYSQL_TIME *myTime = psAlloc(sizeof(MYSQL_TIME)); + myTime->year = (unsigned int)tmTime->tm_year + 1900; + myTime->month = (unsigned int)tmTime->tm_mon + 1; + myTime->day = (unsigned int)tmTime->tm_mday; + myTime->hour = (unsigned int)tmTime->tm_hour; + myTime->minute = (unsigned int)tmTime->tm_min; + myTime->second = (unsigned int)tmTime->tm_sec; + // assume for the time being that we don't have negative + // time as ISO8601 doesn't support dates prior to 0 + myTime->neg = (my_bool)false; + // currently unused by mysql + myTime->second_part = (unsigned long)time->nsec; + psFree(tmTime); + + bind[i].buffer = myTime; + bind[i].buffer_length = sizeof(MYSQL_TIME); + bind[i].length = &bind[i].buffer_length; + bind[i].is_null = NULL; + } else { + // handles the case of NULL as a NULL database value + bind[i].buffer_length = 0; + bind[i].length = &bind[i].buffer_length; + bind[i].buffer = NULL; + bind[i].is_null = (my_bool *)&isNull; + } + break; + } + default: { + psError(PS_ERR_BAD_PARAMETER_TYPE , true, + "FIXME: Unsupported data type"); + psFree(cursor); + + return false; + break; // unreachable + } + } + } + + psFree(cursor); + + return true; +} + +static psDBMysqlRow *psDBMysqlRowAlloc(psU32 paramCount) +{ + psDBMysqlRow *row = psAlloc(sizeof(psDBMysqlRow)); + psMemSetDeallocator(row, (psFreeFunc)psDBMysqlRowFree); + + row->bind = psAlloc(sizeof(MYSQL_BIND) * paramCount); + memset(row->bind, 0, sizeof(MYSQL_BIND) * paramCount); + row->n = paramCount; + + return row; +} + +static void psDBMysqlRowFree(psDBMysqlRow *mysqlRow) +{ + PS_ASSERT_PTR_NON_NULL(mysqlRow, ); + + MYSQL_BIND *bind = mysqlRow->bind; + + psDBMysqlRowRecycle(mysqlRow); + + psFree(bind); +} + +static void psDBMysqlRowRecycle(psDBMysqlRow *mysqlRow) +{ + PS_ASSERT_PTR_NON_NULL(mysqlRow, ); + + MYSQL_BIND *bind = mysqlRow->bind; + + for (psU32 i = 0; i < mysqlRow->n; i++) { + // buffer_length is only defined for pointers to character buffers + // primitive types will have this value set to zero. + if (bind[i].buffer_length) { + psFree(bind[i].buffer); + } + } + + memset(bind, '\0', sizeof(MYSQL_BIND) * mysqlRow->n); +} + + +// SQL generation functions +/*****************************************************************************/ + +static psString psDBGenerateCreateTableSQL(const char *tableName, + const psMetadata *table) +{ + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + PS_ASSERT_PTR_NON_NULL(table, NULL); + + char *query = NULL; // complete query + psMetadataItem *item; // column description + psListIterator *cursor; // column iterator + char *colType; // type lookup table + + // Begin to create SQL string to create table + psStringAppend(&query, "CREATE TABLE %s (", tableName); + + // Set list iterator at head of list + cursor = psListIteratorAlloc(table->list, 0, false); + + // find column name and type + while ((item = psListGetAndIncrement(cursor))) { + switch (item->type) { + case PS_DATA_U8: + case PS_DATA_U16: + case PS_DATA_U32: + case PS_DATA_U64: + case PS_DATA_S8: + case PS_DATA_S16: + case PS_DATA_S32: + case PS_DATA_S64: + case PS_DATA_F32: + case PS_DATA_F64: + case PS_DATA_BOOL: + case PS_DATA_TIME: { + // + column name + _ + column type + colType = psDBPTypeToSQL(item->type); + psStringAppend(&query, "%s %s", item->name, colType); + psFree(colType); + break; + } + case PS_DATA_STRING: { + // + column name + _ + varchar( + length + ) + psStringAppend(&query, "%s VARCHAR(%s)", item->name, item->data.str); + break; + } + default: { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "FIXME: Unsupported data type %d", item->type); + + psFree(query); + psFree(cursor); + + return NULL; + break; // unreachable + } + } + + if (strcasestr(item->comment, "AUTO_INCREMENT")) { + psStringAppend(&query, " %s", "AUTO_INCREMENT"); + } + if (strcasestr(item->comment, "Unique")) { + psStringAppend(&query, " %s", "UNIQUE"); + } + if (strcasestr(item->comment, "NOT NULL")) { + psStringAppend(&query, " %s", "NOT NULL"); + } + + // add a , after every column declaration except the last one + if (!cursor->offEnd) { + psStringAppend(&query, ", "); + } + } + + + // find database indexes + // check for Primary Keys first as they have to be part of the same Primary + // Key stmt + // Reset iterator to head of list + psListIteratorSet(cursor, 0); + psArray *pKeys = psArrayAllocEmpty(1); + while ((item = psListGetAndIncrement(cursor))) { + if (strcasestr(item->comment, "Primary Key")) { + psArrayAdd(pKeys, 0, item->name); + } + } + if (psArrayLength(pKeys)) { + psStringAppend(&query, ", PRIMARY KEY("); + for (int i = 0; i < psArrayLength(pKeys); i++) { + if (i < 1) { + psStringAppend(&query, "%s", (char *)pKeys->data[i]); + } else { + psStringAppend(&query, ", %s", (char *)pKeys->data[i]); + } + } + psStringAppend(&query, ")"); + } + psFree(pKeys); + + // Reset iterator to head of list + psListIteratorSet(cursor, 0); + // look for regular keys + while ((item = psListGetAndIncrement(cursor))) { + // it's just a regular key if it matchs "Key" but not "Primary Key" + if (strcasestr(item->comment, "Key") + && (strcasestr(item->comment, "Primary Key") == NULL)) { + psStringAppend(&query, ", KEY(%s)", item->name); + } else if (strcasestr(item->comment, "AUTO_INCREMENT")) { + // this needs to be recognized as a key if it wasn't already + psStringAppend(&query, ", KEY(%s)", item->name); + } + } + + psFree(cursor); + + // end column types + table type + psStringAppend(&query, ") ENGINE=innodb"); + + return query; +} + +static psString psDBGenerateSelectRowSQL(const char *tableName, + const char *col, + const psMetadata *where, + psU64 limit) +{ + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + + char *query = NULL; + char *whereSQL; + char *limitString; + + // select all columns if col is NULL + if (col) { + psStringAppend(&query, "SELECT %s FROM %s", col, tableName); + } else { + psStringAppend(&query, "SELECT * FROM %s", tableName); + } + + // select all rows if where is NULL + if (where) { + whereSQL = psDBGenerateWhereSQL(where, tableName); + if (!whereSQL) { + psError(PS_ERR_UNEXPECTED_NULL, false, "SQL substring generation failed."); + + psFree(query); + + return NULL; + } + psStringAppend(&query, " %s", whereSQL); + psFree(whereSQL); + } + + // treat limit == 0 as "no limit" + if (limit) { + limitString = psDBGenerateLimitSQL(limit); + psStringAppend(&query, " %s", limitString); + psFree(limitString); + } + + return query; +} + +psString psDBGenerateLimitSQL(psU64 limit) +{ + psString query = NULL; + + psString limitString = psDBIntToString(limit); + psStringAppend(&query, " LIMIT %s", limitString); + psFree(limitString); + + return query; +} + +static psString psDBGenerateInsertRowSQL(const char *tableName, + const psMetadata *row) +{ + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + PS_ASSERT_PTR_NON_NULL(row, NULL); + + char *query = NULL; + psListIterator *cursor; + psMetadataItem *item; + + // Start building query string + psStringAppend(&query, "INSERT INTO %s (", tableName); + + cursor = psListIteratorAlloc(row->list, 0, false); + + // get field names + while ((item = psListGetAndIncrement(cursor))) { + psStringAppend(&query, item->name); + + // + , + _ between every field name + if (!cursor->offEnd) { + psStringAppend(&query, ", "); + } + } + + // end of field names + psStringAppend(&query, ") VALUES ("); + + psListIteratorSet(cursor, 0); + + // create value place holders + while ((item = psListGetAndIncrement(cursor))) { + psStringAppend(&query, "?"); + + // + ", " between every place holder + if (!cursor->offEnd) { + psStringAppend(&query, ", "); + } + } + + psFree(cursor); + + // end of values + psStringAppend(&query, ")"); + + return query; +} + +static psString psDBGenerateUpdateRowSQL(const char *tableName, + const psMetadata *where, + const psMetadata *values) +{ + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + PS_ASSERT_PTR_NON_NULL(values, NULL); + + char *query = NULL; + char *setSQL; + char *whereSQL; + + // Create set SQL substring + setSQL = psDBGenerateSetSQL(values); + if (!setSQL) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("SQL substring generation failed.")); + return NULL; + } + + // Create where SQL substring + whereSQL = psDBGenerateWhereSQL(where, tableName); + if (!whereSQL) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("SQL substring generation failed.")); + return NULL; + } + + // Append substring to SQL update string + psStringAppend(&query, "UPDATE %s %s %s", tableName, setSQL, whereSQL); + psFree(setSQL); + psFree(whereSQL); + + return query; +} + +static psString psDBGenerateDeleteRowSQL(const char *tableName, + const psMetadata *where, + unsigned long long limit) +{ + PS_ASSERT_PTR_NON_NULL(tableName, NULL); + + char *query = NULL; + char *whereSQL; + char *limitString; + + // delete all rows if where is NULL + if (!where) { + psStringAppend(&query, "TRUNCATE TABLE %s", tableName); + return query; + } + + // Generate where SQL substring + whereSQL = psDBGenerateWhereSQL(where, tableName); + if (!whereSQL) { + psError(PS_ERR_UNEXPECTED_NULL, false, _("SQL substring generation failed.")); + return NULL; + } + + psStringAppend(&query, "DELETE FROM %s %s", tableName, whereSQL); + + // Complete delete SQL command string + // treat limit == 0 as "no limit" + if (limit) { + limitString = psDBIntToString(limit); + psStringAppend(&query, " LIMIT %s", limitString); + psFree(limitString); + } + psFree(whereSQL); + + return query; +} + +psString psDBGenerateWhereSQL(const psMetadata *where, const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(where, NULL); + + psString search = psDBGenerateWhereConditionSQL(where, tableName); + if (search) { + psStringPrepend(&search, "WHERE "); + } + + return search; +} + +psString psDBGenerateWhereConditionSQL(const psMetadata *where, const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(where, NULL); + + psString query = NULL; + + // we need to know if an item is 'MULTI' so we have to march through the + // list by key name and not by items + psList *keys = psHashKeyList(where->hash); + psListIterator *cursor = psListIteratorAlloc(keys, 0, false); + + // find column name and match pattern + psString itemName = NULL; + while ((itemName = psListGetAndIncrement(cursor))) { + psMetadataItem *item = psMetadataLookup(where, itemName); + + if (item->type == PS_DATA_METADATA_MULTI) { + char *logicalOp = "AND"; + + // scan through the list and change the logicalOp joining + // conditionals together to "OR" if a comment of "==" is found + psListIterator *mCursor = psListIteratorAlloc(item->data.list, 0, + false); + psMetadataItem *mItem = NULL; + while ((mItem = psListGetAndIncrement(mCursor))) { + if (mItem->comment && strcasestr(mItem->comment, "==")) { + logicalOp = "OR"; + break; + } + } + + // "(" + conditional [ + " AND/OR " + conditional ] + ")" + // reset the iterator + psListIteratorSet(mCursor, 0); + psStringAppend(&query, "("); + while ((mItem = psListGetAndIncrement(mCursor))) { + psString conditional = psDBGenerateConditionalSQL(mItem, tableName); + if (!conditional) { + psError(PS_ERR_UNKNOWN, false, + "SQL conditional generation failed."); + psFree(mCursor); + psFree(cursor); + psFree(keys); + psFree(query); + return NULL; + } + + psStringAppend(&query, "%s", conditional); + psFree(conditional); + + // + " AND/OR " + if (!mCursor->offEnd) { + psStringAppend(&query, " %s ", logicalOp); + } + + } + psFree(mCursor); + + psStringAppend(&query, ")"); + } else { + psString conditional = psDBGenerateConditionalSQL(item, tableName); + if (!conditional) { + psError(PS_ERR_UNKNOWN, false, + "SQL conditional generation failed."); + psFree(cursor); + psFree(keys); + psFree(query); + return NULL; + } + + psStringAppend(&query, "%s", conditional); + psFree(conditional); + } + + // + " and " after every column declaration except the last one + if (!cursor->offEnd) { + psStringAppend(&query, " AND "); + } + } + + // psFree(cursor); + psFree(keys); + + return query; +} + +static psString psDBGenerateSetSQL(const psMetadata *set + ) +{ + PS_ASSERT_PTR_NON_NULL(set + , NULL); + + psString query = psStringCopy("SET "); + + psListIterator *cursor = psListIteratorAlloc(set + ->list, 0, false); + + // find column name + psMetadataItem *item = NULL; + while ((item = psListGetAndIncrement(cursor))) { + // + column name + _ + = + _ + ? + psStringAppend(&query, "%s = ?", item->name); + + // + ", " after every column declaration except the last one + if (!cursor->offEnd) { + psStringAppend(&query, ", "); + } + } + + psFree(cursor); + + return query; +} + +typedef enum { + PS_DB_OP_EQ, + PS_DB_OP_LT, + PS_DB_OP_GT, + PS_DB_OP_LE, + PS_DB_OP_GE, +} psDBOpValue; + +# define PS_DB_FLT_PAD (FLT_EPSILON * 10) +# define PS_DB_DBL_PAD (DBL_EPSILON * 10) + +static psString psDBGenerateConditionalSQL(const psMetadataItem *item, const char *tableName) +{ + PS_ASSERT_PTR_NON_NULL(item, NULL); + + psString query = NULL; + + // stringify the psMetadataItem into a SQL search specification + // XXX we're making a big assumption here that the MySQL server handles + // floating point in the exact same way as the client. This is a bit scary + // as MySQL uses native types on the server end. In theory all IEEE754 + // math is the same but know that isn't always the case. At least forcing + // the comparison to be done on the server provides some consistency + // between clients on different archs. + + // if tableName is specified prepend it to the item name + psString itemName = NULL; + if (tableName) { + psStringAppend(&itemName, "%s.%s", tableName, item->name); + } else { + psStringAppend(&itemName, "%s", item->name); + } + + // select the by of comparasion to use. currently the comparision + // op value is only used by PS_DATA_S32 & PS_DATA_TIME + + // default to exact match ('=') + char *opStr = "="; + psDBOpValue op = PS_DB_OP_EQ; + if (item->comment) { + // arbitrary semantic, precedence is: >=, <=, >, <, = (default) + if (strstr(item->comment, ">=")) { + opStr = ">="; + op = PS_DB_OP_GE; + } else if (strstr(item->comment, "<=")) { + opStr = "<="; + op = PS_DB_OP_LE; + } else if (strstr(item->comment, ">")) { + opStr = ">"; + op = PS_DB_OP_GT; + } else if (strstr(item->comment, "<")) { + opStr = "<"; + op = PS_DB_OP_LT; + } + } + + // XXX why are >, < searches not supported here???? + // fix this immediately!! + // for datetime comparisons, we need to use single-quotes around the string value: + // where dateobs < '2002-09-06' and dateobs > '2002-09-05,15:40:22' + + switch (item->type) { + case PS_DATA_S8: + case PS_DATA_S16: + case PS_DATA_S32: + // the raw opStr is good enough in the query + psStringAppend(&query, "%s %s %d", itemName, opStr, (int)(item->data.S32)); + break; + case PS_DATA_S64: + // the raw opStr is good enough in the query + psStringAppend(&query, "%s %s %" PRId64, itemName, opStr, item->data.S64); + break; + case PS_DATA_U8: + case PS_DATA_U16: + case PS_DATA_U32: + psStringAppend(&query, "%s %s %u", itemName, opStr, (unsigned int)(item->data.U32)); + break; + case PS_DATA_U64: + // the raw opStr is good enough in the query + psStringAppend(&query, "%s %s %" PRIu64, itemName, opStr, item->data.U64); + break; + case PS_DATA_F32: + // need to handle floating-point round-off issues (use a padding of 10*FLT_EPSILON) + switch (op) { + case PS_DB_OP_EQ: + psStringAppend(&query, "(ABS(%s - %.8f) < %.8f)", itemName, (float)(item->data.F32), PS_DB_FLT_PAD); + break; + case PS_DB_OP_LE: + case PS_DB_OP_LT: + // A < B becomes A < B + epsilon + psStringAppend(&query, "(%s < %.8f + %.8f)", itemName, (float)(item->data.F32), PS_DB_FLT_PAD); + break; + case PS_DB_OP_GE: + case PS_DB_OP_GT: + // A > B becomes A > B - epsilon + psStringAppend(&query, "(%s > %.8f - %.8f)", itemName, (float)(item->data.F32), PS_DB_FLT_PAD); + break; + } + break; + case PS_DATA_F64: + // need to handle floating-point round-off issues (use a padding of 10*FLT_EPSILON) + switch (op) { + case PS_DB_OP_EQ: + psStringAppend(&query, "(ABS(%s - %.17f) < %.17f)", itemName, (float)(item->data.F64), PS_DB_DBL_PAD); + break; + case PS_DB_OP_LE: + case PS_DB_OP_LT: + // A < B becomes A < B + epsilon + psStringAppend(&query, "(%s < %.17f + %.17f)", itemName, (float)(item->data.F64), PS_DB_DBL_PAD); + break; + case PS_DB_OP_GE: + case PS_DB_OP_GT: + // A > B becomes A > B - epsilon + psStringAppend(&query, "(%s > %.17f - %.17f)", itemName, (float)(item->data.F64), PS_DB_DBL_PAD); + break; + } + break; + case PS_DATA_BOOL: + switch (op) { + case PS_DB_OP_EQ: + psStringAppend(&query, "%s = %d", itemName, (int)(item->data.B)); + break; + default: + psError(PS_ERR_UNKNOWN, true, "NULL bool can't be compared with any operator other than '=='"); + psFree(itemName); + return NULL; + } + break; + case PS_DATA_STRING: + // XXX EAM : probably need to add some regex-like operations here + // + column name + _ + like + _ + ' + value + ' + // check for NULL and empty ("") strings + if (item->data.V == NULL || *item->data.str == '\0') { + psStringAppend(&query, "%s IS NULL", itemName); + } else { + if (item->comment && strcasestr(item->comment, "LIKE")) { + // XXX ASC NOTE: we should have a better match for + // char & varchar columns than this. LIKE is OK for + // very large TEXT columns that really shouldn't be + // used in a where clause... + psStringAppend(&query, "%s LIKE '%s'", itemName, item->data.str); + } else { + psStringAppend(&query, "%s = '%s'", itemName, item->data.str); + } + } + break; + case PS_DATA_TIME: { + if (item->data.V) { + psString timeStr = psTimeToISO(item->data.V); + psStringAppend(&query, "%s %s '%s'", itemName, opStr, timeStr); + psFree(timeStr); + } else if (strstr(opStr, "=")) { + psStringAppend(&query, "%s IS NULL", itemName); + } else { + psError(PS_ERR_UNKNOWN, true, "psTime comparison value is NULL: A NULL psTime value can't be compared with any operator other than '=='"); + psFree(itemName); + return NULL; + } + + break; + } + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Fixme: Unsupported data type"); + psFree(itemName); + + return NULL; + } + + psFree(itemName); + + return query; +} + + +// lookup table functions +/*****************************************************************************/ + +static psElemType psDBMySQLToPType(enum enum_field_types type, + unsigned int flags) +{ + psHash *mysqlToSQLTable; // type lookup table + psHash *sqlToPSTable; // type lookup table + char *key; // hash tmp value + char *value; // hash tmp value + psString sqlType; // copy of lookup table result + psU32 pType; // psElemType of a field + + mysqlToSQLTable = psDBMySQLToSQLTableGet(); + + // lookup MySQL column type + key = psDBIntToString((psU64)type); + sqlType = psMemIncrRefCounter(psHashLookup(mysqlToSQLTable, key)); + psFree(key); + + if (!sqlType) { + psError(PS_ERR_UNEXPECTED_NULL, true, "type lookup failed."); + return 0; + } + + // MySQL column types can not be directly translated to PS + // types as the the mysql types do not tell you if the value is + // signed or unsigned. The result is this ugly conversion from + // mysql -> ascii -> ptype + if (flags & UNSIGNED_FLAG) { + psString new = NULL; + psStringAppend(&new, "%s UNSIGNED", sqlType); + psFree(sqlType); + sqlType = new; + } + + //psTrace("psLib.db", 9, "sqlType=[%s]\n", sqlType ); + + // convert MySQL type to PS type + sqlToPSTable = psDBSQLToPTypeTableGet(); + value = psHashLookup(sqlToPSTable, sqlType); + + if (!value) { + psError(PS_ERR_UNEXPECTED_NULL, true, "type lookup of %s failed.", sqlType); + psFree(sqlType); + return 0; + } + psFree(sqlType); + + pType = (psU32)atol(value); + + return pType; +} + +static psString psDBPTypeToSQL(psElemType pType) +{ + psHash *pTypeToSQLTable; // type lookup table + char *key; // hash tmp value + char *sqlType; // hash tmp value + + pTypeToSQLTable = psDBPTypeToSQLTableGet(); + + key = psDBIntToString((psU64)pType); + sqlType = psHashLookup(pTypeToSQLTable, key); + psFree(key); + + if (!sqlType) { + psError(PS_ERR_UNEXPECTED_NULL, true, "type lookup failed."); + + return NULL; + } + + psMemIncrRefCounter(sqlType); + + return sqlType; +} + +static mysqlType *psDBPTypeToMySQL(psElemType pType) +{ + psHash *pTypeToMySQLTable; // type lookup table + char *key; // hash tmp value + mysqlType *mType; // mysqlType struct to return + + pTypeToMySQLTable = psDBPTypeToMySQLTableGet(); + + key = psDBIntToString((psU64)pType); + mType = psHashLookup(pTypeToMySQLTable, key); + psFree(key); + + if (!mType) { + psError(PS_ERR_UNEXPECTED_NULL, true, "type lookup failed."); + + return NULL; + } + + psMemIncrRefCounter(mType); + + return mType; +} + +// PTypeToSQLTable + +static psHash *psDBPTypeToSQLTableSetup(void) +{ + if (!pTypeToSQLlookupTable) { + pTypeToSQLlookupTable = psHashAlloc(14); + + // no support for CHAR, TEXT or GLOB + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_S8, "TINYINT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_S16, "SMALLINT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_S32, "INT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_S64, "BIGINT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_U8, "TINYINT UNSIGNED"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_U16, "SMALLINT UNSIGNED"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_U32, "INT UNSIGNED" ); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_U64, "BIGINT UNSIGNED"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_F32, "FLOAT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_F64, "DOUBLE"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_TYPE_C32, "PS_TYPE_C32 is not supported"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_TYPE_C64, "PS_TYPE_C64 is not supported"); + // XXX Since BOOL is added after S8 all "TINYINT" data will appear in + // the database as boolean data. There does not seem to be any way to + // work around this with MySQL < 5.0.3. + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_BOOL,"TINYINT"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_STRING, "VARCHAR"); + psDBAddToLookupTable(pTypeToSQLlookupTable, PS_DATA_TIME, "DATETIME"); + } else { + // increment the ref count by one for every psDB + psMemIncrRefCounter(pTypeToSQLlookupTable); + } + + return pTypeToSQLlookupTable; +} + +static psHash *psDBPTypeToSQLTableGet(void) +{ + return pTypeToSQLlookupTable; +} + +static void psDBPTypeToSQLTableCleanup(void) +{ + PSDB_NULL_FREE(pTypeToSQLlookupTable); +} + + +// SQLToPTypeTable + +static psHash *psDBSQLToPTypeTableSetup(void) +{ + psHash *psToSQLTable; + psList *list; + psListIterator *cursor; + char *key; + char *value; + + if (!sqlToPTypeLookupTable) { + // invert the PSToSQL table + psToSQLTable = psDBPTypeToSQLTableGet(); + sqlToPTypeLookupTable = psHashAlloc(psToSQLTable->n); + + list = psHashKeyList(psToSQLTable); + cursor = psListIteratorAlloc(list, 0, false); + + while ((key = psListGetAndIncrement(cursor))) { + value = psHashLookup(psToSQLTable, key); + // switch key and value + psHashAdd(sqlToPTypeLookupTable, value, key); + } + + // Add BLOB & TEXT reverse mappings + value = psDBIntToString((psU64)PS_DATA_STRING); + psHashAdd(sqlToPTypeLookupTable, "BLOB", value); + psHashAdd(sqlToPTypeLookupTable, "TEXT", value); + psFree(value); + + // DECIMAL does not exist in the pType to SQL table + value = psDBIntToString(0); + psHashAdd(sqlToPTypeLookupTable, "DECIMAL", value); + psFree(value); + + psFree(cursor); + psFree(list); + } else { + // increment the ref count by one for every psDB + psMemIncrRefCounter(sqlToPTypeLookupTable); + } + + return sqlToPTypeLookupTable; +} + +static psHash *psDBSQLToPTypeTableGet(void) +{ + return sqlToPTypeLookupTable; +} + +static void psDBSQLToPTypeTableCleanup(void) +{ + PSDB_NULL_FREE(sqlToPTypeLookupTable); +} + + +// MySQLToSQLTable + +static psHash *psDBMySQLToSQLTableSetup(void) +{ + if (!mysqlToSqlLookupTable) { + mysqlToSqlLookupTable = psHashAlloc(20); + + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_TINY, "TINYINT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_SHORT, "SMALLINT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_LONG, "INT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_INT24, "MEDIUMINT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_LONGLONG, "BIGINT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_DECIMAL, "DECIMAL"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_FLOAT, "FLOAT"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_DOUBLE, "DOUBLE"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_TIMESTAMP, "TIMESTAMP"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_DATE, "DATE"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_TIME, "TIME"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_DATETIME, "DATETIME"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_YEAR, "YEAR"); + // strictly speaking this should CHAR but there is no equivilent ps type + // for char as psString is already mapped to varchar + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_STRING, "VARCHAR"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_VAR_STRING,"VARCHAR"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_BLOB, "BLOB"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_SET, "SET"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_ENUM, "ENUM"); + psDBAddToLookupTable(mysqlToSqlLookupTable, MYSQL_TYPE_NULL, "NULL-type"); + } else { + // increment the ref count by one for every psDB + psMemIncrRefCounter(mysqlToSqlLookupTable); + } + + return mysqlToSqlLookupTable; +} + +static psHash *psDBMySQLToSQLTableGet(void) +{ + return mysqlToSqlLookupTable; +} + +static void psDBMySQLToSQLTableCleanup(void) +{ + PSDB_NULL_FREE(mysqlToSqlLookupTable); +} + + +// PTypeToMySQLTable + +static psHash *psDBPTypeToMySQLTableSetup(void) +{ + if (!pTypeToMysqlLookupTable) { + pTypeToMysqlLookupTable = psHashAlloc(14); + + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_S8, psDBMySQLTypeAlloc(MYSQL_TYPE_TINY, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_S16, psDBMySQLTypeAlloc(MYSQL_TYPE_SHORT, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_S32, psDBMySQLTypeAlloc(MYSQL_TYPE_LONG, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_S64, psDBMySQLTypeAlloc(MYSQL_TYPE_LONGLONG, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_U8, psDBMySQLTypeAlloc(MYSQL_TYPE_TINY, true)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_U16, psDBMySQLTypeAlloc(MYSQL_TYPE_SHORT, true)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_U32, psDBMySQLTypeAlloc(MYSQL_TYPE_LONG, true)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_U64, psDBMySQLTypeAlloc(MYSQL_TYPE_LONGLONG, true)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_F32, psDBMySQLTypeAlloc(MYSQL_TYPE_FLOAT, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_F64, psDBMySQLTypeAlloc(MYSQL_TYPE_DOUBLE, false)); + // bogus type + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_TYPE_C32, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + // bogus type + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_TYPE_C64, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_BOOL, psDBMySQLTypeAlloc(MYSQL_TYPE_TINY, true)); + // XXX: removed PS_DATA_PTR, can this be removed too? + // psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_PTR, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_STRING, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_TIME, psDBMySQLTypeAlloc(MYSQL_TYPE_DATETIME, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_VECTOR, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_IMAGE, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_HASH, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_LOOKUPTABLE, + psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + // psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_JPEG, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + // psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_PNG, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + // psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_ASTROM, psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + psDBAddVoidToLookupTable(pTypeToMysqlLookupTable, PS_DATA_UNKNOWN,psDBMySQLTypeAlloc(MYSQL_TYPE_VAR_STRING, false)); + } else { + // increment the ref count by one for every psDB + psMemIncrRefCounter(pTypeToMysqlLookupTable); + } + + return pTypeToMysqlLookupTable; +} + +static psHash *psDBPTypeToMySQLTableGet(void) +{ + return pTypeToMysqlLookupTable; +} + +static void psDBPTypeToMySQLTableCleanup(void) +{ + PSDB_NULL_FREE(pTypeToMysqlLookupTable); +} + +static psPtr psDBMySQLTypeAlloc(enum enum_field_types type, + bool isUnsigned) +{ + mysqlType *mType = psAlloc(sizeof(mysqlType)); + mType->type = type; + mType->isUnsigned = isUnsigned; + + return mType; +} + +static void psDBAddToLookupTable(psHash *lookupTable, + psU32 type, + const char *string) +{ + PS_ASSERT_PTR_NON_NULL(lookupTable, ); + + psString key = psDBIntToString((psU64)type); + psString value = psStringCopy(string); + + psHashAdd(lookupTable, key, value); + + psFree(key); + psFree(value); +} + +static void psDBAddVoidToLookupTable(psHash *lookupTable, + psU32 type, + psPtr value) +{ + PS_ASSERT_PTR_NON_NULL(lookupTable, ); + + psString key = psDBIntToString((psU64)type); + + psHashAdd(lookupTable, key, value); + + // destructive of value parameter + psFree(value); + psFree(key); +} + +static psErrorCode mysqlTopsErr(MYSQL *mysql) +{ + unsigned int myerrno = mysql_errno(mysql); + if ((myerrno >= 1000) && (myerrno < 2000)) { + return PS_ERR_DB_SERVER; + } else if ((myerrno >= 2000) && (myerrno < 3000)) { + return PS_ERR_DB_CLIENT; + } + + return PS_ERR_UNKNOWN; +} + + +// pType utility functions +/*****************************************************************************/ + +#define PS_NAN_ALLOC(dest, type, nan) \ +dest = psAlloc(sizeof(type)); \ +*(type *)dest = nan; + +static psPtr psDBGetPTypeNaN(psElemType pType) +{ + psPtr myNaN = NULL; + + switch (pType) { + case PS_DATA_S8: + PS_NAN_ALLOC(myNaN, psS8, PS_MAX_S8); + break; + case PS_DATA_S16: + PS_NAN_ALLOC(myNaN, psS16, PS_MAX_S16); + break; + case PS_DATA_S32: + PS_NAN_ALLOC(myNaN, psS32, PS_MAX_S32); + break; + case PS_DATA_S64: + PS_NAN_ALLOC(myNaN, psS64, PS_MAX_S64); + break; + case PS_DATA_U8: + PS_NAN_ALLOC(myNaN, psU8, PS_MAX_U8); + break; + case PS_DATA_U16: + PS_NAN_ALLOC(myNaN, psU16, PS_MAX_U16); + break; + case PS_DATA_U32: + PS_NAN_ALLOC(myNaN, psU32, PS_MAX_U32); + break; + case PS_DATA_U64: + PS_NAN_ALLOC(myNaN, psU64, PS_MAX_U64); + break; + case PS_DATA_F32: + PS_NAN_ALLOC(myNaN, psF32, NAN); + break; + case PS_DATA_F64: + PS_NAN_ALLOC(myNaN, psF64, NAN); + break; + case PS_TYPE_C32: + // this is a bogus SQL type + PS_NAN_ALLOC(myNaN, psC32, NAN); + break; + case PS_TYPE_C64: + // this is a bogus SQL type + PS_NAN_ALLOC(myNaN, psC64, NAN); + break; + case PS_DATA_BOOL: + // XXX: what is NaN for a bool? + PS_NAN_ALLOC(myNaN, psU8, PS_MAX_U8); + break; + } + + return myNaN; +} + +#define PS_IS_NAN(type, data, nan) *(type *)data == nan + +static bool psDBIsPTypeNaN(psElemType pType, + psPtr data) +{ + bool isNaN = NULL; + + switch (pType) { + case PS_DATA_S8: + isNaN = PS_IS_NAN(psS8, data, PS_MAX_S8); + break; + case PS_DATA_S16: + isNaN = PS_IS_NAN(psS16, data, PS_MAX_S16); + break; + case PS_DATA_S32: + isNaN = PS_IS_NAN(psS32, data, PS_MAX_S32); + break; + case PS_DATA_S64: + isNaN = PS_IS_NAN(psS64, data, PS_MAX_S64); + break; + case PS_DATA_U8: + isNaN = PS_IS_NAN(psU8, data, PS_MAX_U8); + break; + case PS_DATA_U16: + isNaN = PS_IS_NAN(psU16, data, PS_MAX_U16); + break; + case PS_DATA_U32: + isNaN = PS_IS_NAN(psU32, data, PS_MAX_U32); + break; + case PS_DATA_U64: + isNaN = PS_IS_NAN(psU64, data, PS_MAX_U64); + break; + case PS_DATA_F32: + isNaN = PS_IS_NAN(psF32, data, NAN); + break; + case PS_DATA_F64: + isNaN = PS_IS_NAN(psF64, data, NAN); + break; + case PS_TYPE_C32: + // this is a bogus SQL type + isNaN = PS_IS_NAN(psC32, data, NAN); + break; + case PS_TYPE_C64: + // this is a bogus SQL type + isNaN = PS_IS_NAN(psC64, data, NAN); + break; + case PS_DATA_BOOL: + // XXX: what is NaN for a bool? + isNaN = PS_IS_NAN(psU8, data, PS_MAX_U8); + break; + } + + return isNaN; +} + +// string utility functions +/*****************************************************************************/ + +psString psDBIntToString(psU64 value) +{ + // length of string (log10 + 1) + \0 + // if value is 0, length is 1 char + \0 + size_t length = value ? (size_t)log10((double)value) + 1 + 1 + : 2; + psString string = psStringAlloc(length); + snprintf(string, length, "%li", (long int)value); + + return string; +} + +#endif // HAVE_PSDB Index: /branches/rel-1-1/psLib/src/db/psDB.h =================================================================== --- /branches/rel-1-1/psLib/src/db/psDB.h (revision 12167) +++ /branches/rel-1-1/psLib/src/db/psDB.h (revision 12167) @@ -0,0 +1,459 @@ +/* @file psDB.h + * @brief database types and functions + * + * This file defines the abstract database type and functions that + * perform basic database operations. + * + * @author Joshua Hoblitt + * + * @version $Revision: 1.35 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-03-01 03:57:08 $ + * + * Copyright 2005 Joshua Hoblitt, University of Hawaii + */ + +#ifndef PS_DB_H +#define PS_DB_H 1 +#ifdef HAVE_PSDB + +/// @addtogroup FileIO Input/Output +/// @{ + +#include "psType.h" +#include "psMetadata.h" + +/** Database handle + * + * An opaque object representing a database connection. + * + */ +typedef struct +{ + void* mysql; ///< MySQL database handle +} +psDB; + +/** Opens a new database connection + * + * @return psDB*: A new psDB object if the database connection is + * successful or NULL on failure. + */ +psDB *psDBAlloc( + const char *host, ///< Database server hostname + const char *user, ///< Database username + const char *passwd, ///< Database password + const char *dbname, ///< Database namespace + unsigned int port ///< Database port number +); + +/** Opens a new database connection + * + * This function is deprecated favor of psDBAlloc() + * + * @return psDB*: A new psDB object if the database connection is + * successful or NULL on failure. + */ +#ifdef DOXYGEN +psDB *psDBInit( + const char *host, ///< Database server hostname + const char *user, ///< Database username + const char *passwd, ///< Database password + const char *dbname, ///< Database namespace + unsigned int port ///< Database port number +); +#else // DOXYGEN +#define psDBInit(host, user, passwd, dbname, port) \ +psDBAlloc(host, user, passwd, dbname, port) +#endif + +#ifdef DOXYGEN +/** Closes a database connection + * + * This function is deprecated favor of psFree() + */ +void psDBCleanup( + psDB *dbh ///< Database handle +); +#else // DOXYGEN +#define psDBCleanup(dbh) \ +psFree(dbh) +#endif + +/** Creates a new database namespace + * + * @return bool: true on success + */ +bool psDBCreate( + psDB *dbh, ///< Database handle + const char *dbname ///< New database namespace +); + +/** Changes the current database namespace + * + * @return bool: true on success + */ +bool psDBChange( + psDB *dbh, ///< Database handle + const char *dbname ///< Database namespace +); + +/** Drops a database namespace + * + * @return bool: true on success + */ +bool psDBDrop( + psDB *dbh, ///< Database handle + const char *dbname ///< Database namespace +); + +/** Executes a SQL query + * + * This function will execute a string as a raw SQL query. No additional + * processing of the string or abstraction of the underlying database's SQL + * dialect is provided. Caveat emptor. + * + * @return bool: true on success + */ +#ifdef __GNUC__ +bool p_psDBRunQuery( + psDB *dbh, ///< Database handle + const char *format, ///< SQL string to execute + ... ///< Arguments for name formatting and metadata item data. +) __attribute__((format(printf, 2, 3))); + +#else // __GNUC__ +bool p_psDBRunQuery( + psDB *dbh, ///< Database handle + const char *format, ///< SQL string to execute + ... ///< Arguments for name formatting and metadata item data. +); +#endif // __GNUC__ + +/** Executes a SQL query as a prepared statement + * + * This function will execute a string as a raw SQL query. No additional + * processing of the string or abstraction of the underlying database's SQL + * dialect is provided. Caveat emptor. + * + * @return long: the number of database rows affected + */ +#ifdef __GNUC__ +long p_psDBRunQueryPrepared( + psDB *dbh, ///< Database handle + const psArray *rowSet, ///< row data as psArray of psMetadata + const char *format, ///< SQL string to execute + ... +) __attribute__((format(printf, 3, 4))); +#else // __GNUC__ +long p_psDBRunQueryPrepared( + psDB *dbh, ///< Database handle + const psArray *rowSet, ///< row data as psArray of psMetadata + const char *format, ///< SQL string to execute + ... +); +#endif // __GNUC__ + +/** Fetches the result of a SQL query + * + * This function returns the result of the most recent SQL query as a psArray + * of psMetadata. Caveat emptor. + * + * @return psArray*: A psArray of psMetadata or NULL on failure + */ +psArray *p_psDBFetchResult( + psDB *dbh ///< Database handle +); + +/** Creates a new database table + * + * This function generates and executes the SQL needed to create a table named + * "tableName", with the column names and data types as described in "md". Each + * data item in the psMetadata collection represents a single table field. The + * name of the field is given by the name of the psMetadataItem and the data + * type is give by the psMetadataItem.type and psMetadataItem.ptype entries. A + * lookup table should be used to convert from PSLib types into MySQL + * compatible SQL data types. For example, a PS_DATA_STRING would map to an SQL99 + * varchar. If the value of type is PS_DATA_STRING then the psMetadataItem.data + * element is set to a string with the length for the field written as a text + * string. The value of the psMetadataItem.data element is unused for the + * PS_META_PRIMITIVE types. Other psMetadata types beyond PS_DATA_STRING and + * PS_META_PRIMITIVE are not allowed in a table definition. + * + * Database indexes can be specified setting the "comment" field to "Primary + * Key" or "Key". Comments are otherwise ignored. + * + * @return bool: true on success + */ +bool psDBCreateTable( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psMetadata *md ///< Column names, types, and indexes +); + +/** Deletes a database table + * + * @return bool: true on success +*/ +bool psDBDropTable( + psDB *dbh, ///< Database handle + const char *tableName ///< Table name +); + +/** Selects a column from a table + * + * This function generates and executes the SQL needed to select an entire + * column from a table or up to "limit" rows from it. If "limit" is 0, the + * entire range is returned. + * + * @return psArray*: A psArray of strings or NULL on failure + */ +psArray *psDBSelectColumn( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const char *col, ///< Column name + unsigned long long limit ///< Maximum number of elements to return +); + +/** Selects a column from a table and casts it to a given type + * + * This function generates and executes the SQL needed to select an entire + * column from a table or up to "limit" rows from it. If "limit" is 0, the + * entire range is returned. The data in the column is cast to to "pType". + * + * @return psVector*: A psVector or NULL on failure + */ +psVector *psDBSelectColumnNum( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const char *col, ///< Column name + psElemType type, ///< Resulting psVector type + unsigned long long limit ///< Maximum number of elements to return +); + +/** Selects a set of rows from a table + * + * This function returns rows from the specified table which match the + * restrictions given by "where". The restrictions are specified as field / + * value pairs. The psMetadata collection "where" must consist of valid + * database fields. The selected rows are returned as a psArray of psMetadata + * values, one per row. + * + * Currently, the "where" specification only supports the PS_DATA_STRING type. + * The string value can be a SQL match pattern, e.g. "%foo%", or an empty + * string, e.g. "", to match NULL field values. + * + * @return psArray*: A psArray of psMetadata or NULL on failure + */ +psArray *psDBSelectRows( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psMetadata *where, ///< Row match criteria + unsigned long long limit ///< Maximum number of elements to return +); + +/** Insert a single row into a table + * + * This function inserts the data from "row" into "tableName". + * + * The "row" specification uses the psMetadataItem name as the column name. + * The field values may be specified in any order. psMetadata types beyond + * PS_DATA_STRING and PS_META_PRIMITIVE are not supported. If fields are + * specified in "row" that do not exist in "tableName", the insert will fail. + * + * @return bool: true on success + */ +bool psDBInsertOneRow( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psMetadata *row ///< Row description +); + +/** Insert a set of rows into a table + * + * This function inserts the data from "rowSet" into "tableName". + * + * "rowSet" is a psArray of psMetadata containing row specifications identical to + * those used in psDBInsertOneRow(). + * + * @return bool: true on success + */ +bool psDBInsertRows( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psArray *rowSet ///< Set of rows to insert +); + +/** Retrieves all rows from a table + * + * This function fetches all rows as an psArray of psMetadata. The rows are in + * the same psMetadata format as used in psDBInsertOneRow() & psDBInsertRows(). + * + * @return psArray*: A psArray of psMetadata or NULL on failure + */ +psArray *psDBDumpRows( + psDB *dbh, ///< Database handle + const char *tableName ///< Table name +); + +/** Retrieves all columns from a table + * + * This function fetches all columns, as either a psVector or a psArray + * depending on whether or not the column is numeric, and return them in a + * psMetadata structure where psMetadataItem.name contains the column's name. + * + * @return psMetadata*: A psMetadata containing either a psArrays or psVector per column + */ +psMetadata *psDBDumpCols( + psDB *dbh, ///< Database handle + const char *tableName ///< Table name +); + +/** Updates the field values, as specified, in a table + * + * This function updates the fields contained in "values" in the row(s) that + * have a field with the value indicated by "where". Where "where" is in the + * same format as used in psDBSelectRows(). + * + * The "values" specification uses the same format as the row specification + * used in psDBInsertOneRow(), etc. + * + * @return long: The number of rows modified or a negative value on error + */ +long psDBUpdateRows( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psMetadata *where, ///< Row match criteria + psMetadata *values ///< new field values +); + +/** Deletes rows, as specified, in a table + * + * Delete the rows that are matched by "where" using the same semantics for + * "where" as in psDBUpdateRow(). + * + * If "where" is NULL, all rows in the table will be removed and regardless of + * the number of rows that were dropped, only 1 will be returned on success. + * + * @return long: The number of rows removed or a negative value on error + */ +long psDBDeleteRows( + psDB *dbh, ///< Database handle + const char *tableName, ///< Table name + const psMetadata *where, ///< Row match criteria + unsigned long long limit ///< Maximum number of rows to delete +); + +/** Get the last insert ID + * + * Returns the value of MySQLs 'LAST_INSERT_ID()' function + * + * @return long: The last insert ID + */ +long long psDBLastInsertID( + psDB *dbh ///< Database handle +); + +/** Enable/Disable explicit database transactions + * + * This function is used to enable explicit transaction support. It is off by + * default. + * + * @return bool: true if transactions are enabled + */ +bool psDBExplicitTrans( + psDB *dbh, ///< Database handle + bool mode ///< transactions enable/disable +); + +/** Start a new transaction set. + * + * This is only a meaningful action if explict transactions are disabled. + * + * @return bool: true on success + */ +bool psDBTransaction( + psDB *dbh ///< Database handle +); + +/** Commits the current transaction + * + * This function will commit the current transaction set (a rollback is not + * possible after this function is successfully executed). A commit also + * effectively starts a new transaction if explict transactions are enabled. + * + * @return bool: true on success + */ +bool psDBCommit( + psDB *dbh ///< Database handle +); + +/** Rollback the current transaction + * + * This function will rollback the current transaction set. + * + * @return bool: true on success + */ +bool psDBRollback( + psDB *dbh ///< Database handle +); + +/** Generates an SQL "Where" fragment + * + * This function generates an SQL fragment (not a whole usable query) based on + * the standard "where" metadata format. + * + * @return psString: A psString or NULL on failure + */ +psString psDBGenerateWhereSQL( + const psMetadata *where, ///< Row match criteria + const char *tableName ///< Table name +); + +/** Generates an SQL "where conditon" statement + * + * This function generates a "Where" fragment but omits the "Where" keyword. + * This function generates an SQL fragment (not a whole usable query) based on + * the standard "where" metadata format. + * + * @return psString: A psString or NULL on failure + */ +psString psDBGenerateWhereConditionSQL( + const psMetadata *where, ///< Row match criteria + const char *tableName ///< Table name +); + +/** Generates an SQL "limit" statement + * + * This function generates an SQL fragment (not a whole usable query). + * + * @return psString: A psString or NULL on failure + */ +psString psDBGenerateLimitSQL( + psU64 limit ///< result set row limit +); + +/** converts an integer into a psString + * + * Note that this function takes an unsigned value. + * + * @return psString: A psString or NULL on failure + */ +psString psDBIntToString( + psU64 value // integer value to convert +); + +/** The number of rows modified or inserted by the last query + * + * This function returns ((psU64) - 1) on error + * + * @return psU64 + */ +psU64 psDBAffectedRows( + psDB *dbh ///< Database handle +); + +/// @} +#else +typedef void psDB; +#endif // HAVE_PSDB +#endif // PS_DB_H Index: /branches/rel-1-1/psLib/src/fft/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/fft/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/fft/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/fft/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/Makefile.am (revision 12167) @@ -0,0 +1,16 @@ +#Makefile for fft functions of psLib +# +noinst_LTLIBRARIES = libpslibfft.la + +libpslibfft_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(FFTW3_CFLAGS) +libpslibfft_la_SOURCES = \ + psImageFFT.c \ + psVectorFFT.c + +EXTRA_DIST = fft.i + +pkginclude_HEADERS = \ + psVectorFFT.h \ + psImageFFT.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/fft/fft.i =================================================================== --- /branches/rel-1-1/psLib/src/fft/fft.i (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/fft.i (revision 12167) @@ -0,0 +1,3 @@ +/* db headers */ +%include "psImageFFT.h" +%include "psVectorFFT.h" Index: /branches/rel-1-1/psLib/src/fft/psImageFFT.c =================================================================== --- /branches/rel-1-1/psLib/src/fft/psImageFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/psImageFFT.c (revision 12167) @@ -0,0 +1,275 @@ +/// @file psImageFFT.c +/// +/// @brief Contains FFT transform related functions for psImage. +/// +/// @author Paul Price, IfA +/// @author Robert DeSonia, MHPCC +/// +/// @version $Revision: 1.23 $ $Name: not supported by cvs2svn $ +/// @date $Date: 2007-02-09 00:22:55 $ +/// +/// Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +/// + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include + +#include "psAssert.h" +#include "psError.h" +#include "psMemory.h" +#include "psLogMsg.h" +#include "psConstants.h" +#include "psImageStructManip.h" +#include "psImageFFT.h" + + +#define FFTW_PLAN_RIGOR FFTW_ESTIMATE // How rigorous the FFTW planning is + +static psBool fftwWisdomImported = false; // Has the FFTW wisdom been imported yet? + +bool psImageForwardFFT(psImage **real, psImage **imag, const psImage *in) +{ + PS_ASSERT_IMAGE_NON_NULL(in, false); + PS_ASSERT_IMAGE_TYPE(in, PS_TYPE_F32, false); + PS_ASSERT_PTR_NON_NULL(real, false); + PS_ASSERT_PTR_NON_NULL(imag, false); + + // Make sure the system-level wisdom information is imported. + if (!fftwWisdomImported) { + fftwf_import_system_wisdom(); + fftwWisdomImported = true; + } + + int numCols = in->numCols; // Number of columns + int numRows = in->numRows; // Number of rows + + psF32 *input; // Input data, for FFTW + if (!in->parent) { + // No parent --- can just use the data buffer + input = psMemIncrRefCounter(in->p_rawDataBuffer); + } else { + // Need to copy the data + input = psAlloc(numCols * numRows); + for (int y = 0; y < numRows; y++) { + memcpy(&input[y * numRows], in->data.F32[y], numCols); + } + } + + // Do the FFT + fftwf_complex *out = fftwf_malloc((numCols/2 + 1) * numRows * sizeof(fftwf_complex)); // Output data + fftwf_plan plan = fftwf_plan_dft_r2c_2d(numRows, numCols, input, out, FFTW_PLAN_RIGOR); + fftwf_execute(plan); + fftwf_destroy_plan(plan); + psFree(input); + + // Pull the real and imaginary parts out + numCols = numCols/2 + 1; // x dimension is halved by FFTW + *real = psImageRecycle(*real, numCols, numRows, PS_TYPE_F32); + *imag = psImageRecycle(*imag, numCols, numRows, PS_TYPE_F32); + for (int y = 0, index = 0; y < numRows; y++) { + for (int x = 0; x < numCols; index++, x++) { +#if !defined(FFTW_NO_Complex) && defined(_Complex_I) && defined(complex) && defined(I) + // C99 complex support + (*real)->data.F32[y][x] = creal(out[index]); + (*imag)->data.F32[y][x] = cimag(out[index]); +#else + // FFTW's backup complex support + (*real)->data.F32[y][x] = out[index][0]; + (*imag)->data.F32[y][x] = out[index][1]; +#endif + } + } + fftwf_free(out); + + return true; +} + +bool psImageBackwardFFT(psImage **out, const psImage *real, const psImage *imag, int origCols) +{ + PS_ASSERT_IMAGE_NON_NULL(real, false); + PS_ASSERT_IMAGE_TYPE(real, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_NON_NULL(imag, false); + PS_ASSERT_IMAGE_TYPE(imag, PS_TYPE_F32, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(real, imag, false); + PS_ASSERT_PTR_NON_NULL(out, false); + + int numCols = real->numCols; // Number of columns + int numRows = real->numRows; // Number of rows + + // Because of the way FFT r2c and c2r work, need the number of columns in the target to be: + // 2 * numCols = 2*(numCols/2 + 1) = origCols % 2 ? origCols + 1 : origCols + 2 + if (2 * numCols != ((origCols % 2) ? origCols + 1 : origCols + 2)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Number of columns in FFT-ed images (%d) should be origCols (%d) / 2 + 1 = %d", + numCols, origCols, origCols/2 + 1); + return false; + } + + if (*out && (*out)->parent) { + // It has a parent, so we can't write directly into the buffer. + // It had better be the correct size and type, because we don't want to resize a child image + PS_ASSERT_IMAGE_SIZE(*out, origCols, numRows, false); + PS_ASSERT_IMAGE_TYPE(*out, PS_TYPE_F32, false); + } + + + // Make sure the system-level wisdom information is imported. + if (!fftwWisdomImported) { + fftwf_import_system_wisdom(); + fftwWisdomImported = true; + } + + // Stuff the real and imaginary parts in + psF32 *target = psAlloc(2 * numCols * numRows * PSELEMTYPE_SIZEOF(PS_TYPE_F32)); // Target for FFTW + fftwf_complex *in = fftwf_malloc(numCols * numRows * sizeof(fftwf_complex)); // Input data + + for (int y = 0, index = 0; y < numRows; y++) { + for (int x = 0; x < numCols; index++, x++) { +#if !defined(FFTW_NO_Complex) && defined(_Complex_I) && defined(complex) && defined(I) + // C99 complex support + in[index] = real->data.F32[y][x] + imag->data.F32[y][x] * I; +#else + // FFTW's backup complex support + in[index][0] = real->data.F32[y][x]; + in[index][1] = imag->data.F32[y][x]; +#endif + } + } + + // Do the FFT + fftwf_plan plan = fftwf_plan_dft_c2r_2d(numRows, origCols, in, target, FFTW_PLAN_RIGOR); + fftwf_execute(plan); + fftwf_destroy_plan(plan); + fftwf_free(in); + + // Copy the target pixels into the output + if (!(*out) || !(*out)->parent) { + *out = psImageRecycle(*out, origCols, numRows, PS_TYPE_F32); + memcpy((*out)->p_rawDataBuffer, target, numRows * origCols * PSELEMTYPE_SIZEOF(PS_TYPE_F32)); + } else { + for (int y = 0, index = 0; y < numRows; y++, index += origCols) { + memcpy(&(*out)->data.F32[y][0], &target[index], origCols * PSELEMTYPE_SIZEOF(PS_TYPE_F32)); + } + } + + psFree(target); + + return true; +} + +psImage* psImagePowerSpectrum(psImage *out, const psImage *in) +{ + PS_ASSERT_IMAGE_NON_NULL(in, NULL); + PS_ASSERT_IMAGE_TYPE(in, PS_TYPE_F32, NULL); + + psImage *real = NULL; // Real component of FFT + psImage *imag = NULL; // Imaginary component of FFT + + if (!psImageForwardFFT(&real, &imag, in)) { + psError(PS_ERR_UNKNOWN, false, "Unable to perform forward FFT."); + return NULL; + } + + int numCols = real->numCols; // Number of columns + int numRows = real->numRows; // Number of rows + + float norm = 1.0 / PS_SQR(in->numCols) / PS_SQR(in->numRows); + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + // Power spectrum is the square of the complex modulus + real->data.F32[y][x] = norm * (PS_SQR(real->data.F32[y][x]) + PS_SQR(imag->data.F32[y][x])); + } + } + psFree(imag); + + return real; +} + + + +bool psImageComplexMultiply(psImage **outReal, psImage **outImag, + const psImage *in1Real, const psImage *in1Imag, + const psImage *in2Real, const psImage *in2Imag) +{ + PS_ASSERT_IMAGE_NON_NULL(in1Real, false); + PS_ASSERT_IMAGE_NON_NULL(in1Imag, false); + PS_ASSERT_IMAGE_NON_NULL(in2Real, false); + PS_ASSERT_IMAGE_NON_NULL(in2Imag, false); + PS_ASSERT_IMAGE_TYPE(in1Real, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_TYPE(in1Imag, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_TYPE(in2Real, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_TYPE(in2Imag, PS_TYPE_F32, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in1Imag, in1Real, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in2Real, in1Real, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in2Imag, in1Real, false); + PS_ASSERT_PTR_NON_NULL(outReal, false); + PS_ASSERT_PTR_NON_NULL(outImag, false); + if (*outReal) { + PS_ASSERT_IMAGE_NON_NULL(*outReal, false); + PS_ASSERT_IMAGE_NON_NULL(*outImag, false); + } else if (*outImag) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "If the output real part is provided, the output imaginary part must also be provided."); + return false; + } + + int numRows = in1Real->numRows; // Number of rows + int numCols = in1Real->numCols; // Number of columns + + // Need to worry if the outputs are children + psImage *targetReal, *targetImag; // Target real and imaginary parts + + if ((*outReal)->parent) { + // It had better be the correct size and type, because we don't want to resize a child image + PS_ASSERT_IMAGE_TYPE(*outReal, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_SIZE(*outReal, numCols, numRows, false); + targetReal = psImageAlloc(numCols, numRows, PS_TYPE_F32); + } else { + *outReal = psImageRecycle(*outReal, numCols, numRows, PS_TYPE_F32); + targetReal = psMemIncrRefCounter(*outReal); + } + if ((*outImag)->parent) { + // It had better be the correct size and type, because we don't want to resize a child image + if ((*outReal)->numCols != numCols || (*outReal)->numRows != numRows || + (*outImag)->type.type != PS_TYPE_F32) { + // Plug potential memory leak --- need to free targetReal if there's a problem + psFree(targetReal); + } + PS_ASSERT_IMAGE_TYPE(*outReal, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_SIZE(*outReal, numCols, numRows, false); + targetImag = psImageAlloc(numCols, numRows, PS_TYPE_F32); + } else { + *outImag = psImageRecycle(*outImag, numCols, numRows, PS_TYPE_F32); + targetImag = psMemIncrRefCounter(*outImag); + } + + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + // (a + bi) * (c + di) = (ac - bd) + (bc + ad)i + float real = in1Real->data.F32[y][x] * in2Real->data.F32[y][x] - + in1Imag->data.F32[y][x] * in2Imag->data.F32[y][x]; + float imag = in1Imag->data.F32[y][x] * in2Real->data.F32[y][x] + + in1Real->data.F32[y][x] * in2Imag->data.F32[y][x]; + targetReal->data.F32[y][x] = real; + targetImag->data.F32[y][x] = imag; + } + } + + if ((*outReal)->parent) { + *outReal = psImageCopy(*outReal, targetReal, PS_TYPE_F32); + } + if ((*outImag)->parent) { + *outImag = psImageCopy(*outImag, targetImag, PS_TYPE_F32); + } + + psFree(targetReal); + psFree(targetImag); + + return true; +} Index: /branches/rel-1-1/psLib/src/fft/psImageFFT.h =================================================================== --- /branches/rel-1-1/psLib/src/fft/psImageFFT.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/psImageFFT.h (revision 12167) @@ -0,0 +1,64 @@ +/// @file psImageFFT.h +/// @brief Contains FFT transform related functions for psImage +/// +/// @author Paul Price, IfA +/// @author Robert DeSonia, MHPCC +/// +/// @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ +/// @date $Date: 2007-02-08 04:23:57 $ +/// Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +/// + +#ifndef PS_IMAGE_FFT_H +#define PS_IMAGE_FFT_H + +#include "psImage.h" + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/// Forward FFT of an image +/// +/// Applies a forward FFT (exponent -1), with the result returned in both real and imaginary parts. The FFT +/// is not normalised (a forward followed by a reverse is the original scaled by the total number of pixels). +/// The FFT takes advantage of the fact that the input is purely real; hence the output number of columns is +/// numCols/2 + 1 (with division rounding down). Only implemented for F32 input. +bool psImageForwardFFT(psImage **real, ///< Real part of FFT + psImage **imag, ///< Imaginary part of FFT + const psImage *in///< Input image (F32) + ); + +/// Backward FFT of an image +/// +/// Applies a backward FFT (exponent +1) from the real and imaginary parts with the (purely) real result +/// returned. The FFT is not normalised (a forward followed by a reverse is the original scaled by the total +/// number of pixels). The FFT takes advantage of the fact that the output will be purely real; hence the +/// input number of columns is numCols/2 + 1 (with division rounding down); to manage the redundancy (is the +/// original number of columns even or odd?), we need the original number of columns (the number of columns of +/// the image that was input to psImageForwardFFT) to be provided. Only implemented for F32 input. +bool psImageBackwardFFT(psImage **out,///< Output image + const psImage *real, ///< Real input (F32) + const psImage *imag, ///< Imaginary input (F32) + int origCols ///< Original number of columns + ); + + +/// Power spectrum of an image +/// +/// Generates the power spectrum of an image. Only implemented for F32 input. +psImage* psImagePowerSpectrum(psImage *out, const psImage *in); + +/// Multiply complex images +/// +/// The input images are the real and imaginary parts of each of two images. The real and imaginary parts +/// of the output image are returned. Only implemented for F32 input. +bool psImageComplexMultiply(psImage **outReal, ///< Real part of output + psImage **outImag, ///< Imaginary part of output + const psImage *in1Real, ///< Real part of input 1 + const psImage *in1Imag, ///< Imaginary part of input 1 + const psImage *in2Real, ///< Real part of input 2 + const psImage *in2Imag ///< Imaginary part of input 2 + ); + +/// @} +#endif // #ifndef PS_IMAGE_FFT_H Index: /branches/rel-1-1/psLib/src/fft/psVectorFFT.c =================================================================== --- /branches/rel-1-1/psLib/src/fft/psVectorFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/psVectorFFT.c (revision 12167) @@ -0,0 +1,186 @@ +/** @file psVectorFFT.c + * + * @brief Contains FFT transform related functions for psVector + * + * @author Paul Price, IfA + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.39 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-09 00:45:51 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#include +#include +#include +#include +#include + +#include "psAssert.h" +#include "psError.h" +#include "psMemory.h" +#include "psLogMsg.h" +#include "psConstants.h" +#include "psVectorFFT.h" + +#define FFTW_PLAN_RIGOR FFTW_ESTIMATE // How rigorous the FFTW planning is + +static psBool fftwWisdomImported = false; // Has the system wisdom been imported? + +bool psVectorForwardFFT(psVector **real, psVector **imag, const psVector *in) +{ + PS_ASSERT_VECTOR_NON_NULL(in, false); + PS_ASSERT_VECTOR_TYPE(in, PS_TYPE_F32, false); + PS_ASSERT_PTR_NON_NULL(real, false); + PS_ASSERT_PTR_NON_NULL(imag, false); + + // Make sure the system-level wisdom information is imported. + if (!fftwWisdomImported) { + fftwf_import_system_wisdom(); + fftwWisdomImported = true; + } + + long num = in->n; // Number of elements + + // Do the FFT + fftwf_complex *out = fftwf_malloc((num/2 + 1) * sizeof(fftwf_complex)); // Output data + fftwf_plan plan = fftwf_plan_dft_r2c_1d(num, in->data.F32, out, FFTW_PLAN_RIGOR); + fftwf_execute(plan); + fftwf_destroy_plan(plan); + + // Pull the real and imaginary parts out + num = num/2 + 1; + *real = psVectorRecycle(*real, num, PS_TYPE_F32); + *imag = psVectorRecycle(*imag, num, PS_TYPE_F32); + for (int i = 0; i < num; i++) { +#if !defined(FFTW_NO_Complex) && defined(_Complex_I) && defined(complex) && defined(I) + // C99 complex support + (*real)->data.F32[i] = creal(out[i]); + (*imag)->data.F32[i] = cimag(out[i]); +#else + // FFTW's backup complex support + (*real)->data.F32[i] = out[i][0]; + (*imag)->data.F32[i] = out[i][1]; +#endif + } + fftwf_free(out); + + return true; +} + +bool psVectorBackwardFFT(psVector **out, const psVector *real, const psVector *imag, long origNum) +{ + PS_ASSERT_VECTOR_NON_NULL(real, false); + PS_ASSERT_VECTOR_TYPE(real, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_NON_NULL(imag, false); + PS_ASSERT_VECTOR_TYPE(imag, PS_TYPE_F32, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(real, imag, false); + PS_ASSERT_PTR_NON_NULL(out, false); + + // Make sure the system-level wisdom information is imported. + if (!fftwWisdomImported) { + fftwf_import_system_wisdom(); + fftwWisdomImported = true; + } + + long num = real->n; // Number of elements + + // Stuff the real and imaginary parts in + fftwf_complex *in = fftwf_malloc(num * sizeof(fftwf_complex)); // Input data + for (int i = 0; i < num; i++) { +#if !defined(FFTW_NO_Complex) && defined(_Complex_I) && defined(complex) && defined(I) + // C99 complex support + in[i] = real->data.F32[i] + imag->data.F32[i] * I; +#else + // FFTW's backup complex support + in[i][0] = real->data.F32[i]; + in[i][1] = imag->data.F32[i]; +#endif + } + + + // Do the FFT + *out = psVectorRecycle(*out, origNum, PS_TYPE_F32); + fftwf_plan plan = fftwf_plan_dft_c2r_1d(origNum, in, (*out)->data.F32, FFTW_PLAN_RIGOR); + fftwf_execute(plan); + fftwf_destroy_plan(plan); + + fftwf_free(in); + + return true; +} + +psVector *psVectorPowerSpectrum(psVector* out, const psVector* in) +{ + PS_ASSERT_VECTOR_NON_NULL(in, NULL); + PS_ASSERT_VECTOR_TYPE(in, PS_TYPE_F32, NULL); + + psVector *real = NULL; // Real component of FFT + psVector *imag = NULL; // Imaginary component of FFT + + if (!psVectorForwardFFT(&real, &imag, in)) { + psError(PS_ERR_UNKNOWN, false, "Unable to perform forward FFT."); + return NULL; + } + + int num = real->n; // Number of elements + + float norm = 1.0 / PS_SQR(in->n); + for (int i = 0; i < num; i++) { + // Power spectrum is the square of the complex modulus + real->data.F32[i] = norm * (PS_SQR(real->data.F32[i]) + PS_SQR(imag->data.F32[i])); + } + psFree(imag); + + return real; +} + +bool psVectorComplexMultiply(psVector **outReal, psVector **outImag, + const psVector *in1Real, const psVector *in1Imag, + const psVector *in2Real, const psVector *in2Imag) +{ + PS_ASSERT_VECTOR_NON_NULL(in1Real, false); + PS_ASSERT_VECTOR_NON_NULL(in1Imag, false); + PS_ASSERT_VECTOR_NON_NULL(in2Real, false); + PS_ASSERT_VECTOR_NON_NULL(in2Imag, false); + PS_ASSERT_VECTOR_TYPE(in1Real, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(in1Imag, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(in2Real, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(in2Imag, PS_TYPE_F32, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(in1Imag, in1Real, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(in2Real, in1Real, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(in2Imag, in1Real, false); + PS_ASSERT_PTR_NON_NULL(outReal, false); + PS_ASSERT_PTR_NON_NULL(outImag, false); + if (*outReal) { + PS_ASSERT_VECTOR_NON_NULL(*outReal, false); + PS_ASSERT_VECTOR_NON_NULL(*outImag, false); + } else if (*outImag) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "If the output real part is provided, the output imaginary part must also be provided."); + return false; + } + + int num = in1Real->n; // Number of elements + + *outReal = psVectorRecycle(*outReal, num, PS_TYPE_F32); + *outImag = psVectorRecycle(*outImag, num, PS_TYPE_F32); + + for (int i = 0; i < num; i++) { + // (a + bi) * (c + di) = (ac - bd) + (bc + ad)i + float real = in1Real->data.F32[i] * in2Real->data.F32[i] - + in1Imag->data.F32[i] * in2Imag->data.F32[i]; + float imag = in1Imag->data.F32[i] * in2Real->data.F32[i] + + in1Real->data.F32[i] * in2Imag->data.F32[i]; + + (*outReal)->data.F32[i] = real; + (*outImag)->data.F32[i] = imag; + } + + return true; +} Index: /branches/rel-1-1/psLib/src/fft/psVectorFFT.h =================================================================== --- /branches/rel-1-1/psLib/src/fft/psVectorFFT.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fft/psVectorFFT.h (revision 12167) @@ -0,0 +1,65 @@ +/// @file psVectorFFT.h +/// @brief Contains FFT transform related functions for psVector +/// +/// @author Paul Price, IfA +/// @author Robert DeSonia, MHPCC +/// +/// @version $Revision: 1.21 $ $Name: not supported by cvs2svn $ +/// @date $Date: 2007-02-08 04:23:57 $ +/// Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +/// + +#ifndef PS_VECTOR_FFT_H +#define PS_VECTOR_FFT_H + +#include "psVector.h" + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/// Forward FFT of a vector +/// +/// Applies a forward FFT (exponent -1), with the result returned in both real and imaginary parts. The FFT +/// is not normalised (a forward followed by a reverse is the original scaled by the number of elements). The +/// FFT takes advantage of the fact that the input is purely real; hence the output size is N/2 + 1 (with +/// division rounding down). Only implemented for F32 input. +bool psVectorForwardFFT(psVector **real,///< Real part of FFT + psVector **imag,///< Imaginary part of FFT + const psVector *in ///< Input vector (F32) + ); + +/// Backward FFT of a vector +/// +/// Applies a backward FFT (exponent +1) from the real and imaginary parts with the (purely) real result +/// returned. The FFT is not normalised (a forward followed by a reverse is the original scaled by the number +/// of elements). The FFT takes advantage of the fact that the output will be purely real; hence the input +/// size is N/2 + 1 (with division rounding down); to manage the redundancy (is the original size even or +/// odd?), we need the original size (the size of the array that was input to psVectorForwardFFT) to be +/// provided. Only implemented for F32 input. +bool psVectorBackwardFFT(psVector **out,///< Output vector + const psVector *real, ///< Real input (F32) + const psVector *imag, ///< Imaginary input (F32) + long origNum ///< Original number of elements + ); + +/// Power spectrum of a vector +/// +/// Generates the power spectrum of a vector. Only implemented for F32 input. +psVector *psVectorPowerSpectrum(psVector *out, ///< Output power spectrum, or NULL + const psVector* in ///< Input vector (F32) + ); + +/// Multiply complex vectors +/// +/// The input vectors are the real and imaginary parts of each of two vectors. The real and imaginary parts +/// of the output vector are returned. Only implemented for F32 input. +bool psVectorComplexMultiply(psVector **outReal, ///< Real part of output + psVector **outImag, ///< Imaginary part of output + const psVector *in1Real, ///< Real part of input 1 + const psVector *in1Imag, ///< Imaginary part of input 1 + const psVector *in2Real, ///< Real part of input 2 + const psVector *in2Imag ///< Imaginary part of input 2 + ); + +/// @} +#endif // #ifndef PS_VECTOR_FFT_H Index: /branches/rel-1-1/psLib/src/fits/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/fits/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/fits/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/fits/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/Makefile.am (revision 12167) @@ -0,0 +1,20 @@ +#Makefile for fits functions of psLib +# +noinst_LTLIBRARIES = libpslibfits.la + +libpslibfits_la_CFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(CFITSIO_CFLAGS) $(AM_CFLAGS) +libpslibfits_la_SOURCES = \ + psFits.c \ + psFitsHeader.c \ + psFitsImage.c \ + psFitsTable.c + +EXTRA_DIST = fits.i + +pkginclude_HEADERS = \ + psFits.h \ + psFitsHeader.h \ + psFitsImage.h \ + psFitsTable.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/fits/fits.i =================================================================== --- /branches/rel-1-1/psLib/src/fits/fits.i (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/fits.i (revision 12167) @@ -0,0 +1,5 @@ +/* fits headers */ +%include "psFits.h" +%include "psFitsHeader.h" +%include "psFitsImage.h" +%include "psFitsTable.h" Index: /branches/rel-1-1/psLib/src/fits/psFits.c =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFits.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFits.c (revision 12167) @@ -0,0 +1,627 @@ +/** @file psFits.c + * + * @brief Contains Fits I/O routines + * + * @ingroup FileIO + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.61 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-22 21:47:29 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psFits.h" +#include "string.h" +#include "psError.h" +#include "psAssert.h" +#include "psImageStructManip.h" +#include "psMemory.h" +#include "psString.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psVector.h" + +#define MAX_STRING_LENGTH 256 // maximum length string for FITS routines + +static bool isHDUEmpty(const psFits* fits) +{ + /* check for keys - no keys means this is really an empty HDU */ + int keysexist = -1; + int morekeys; + int status = 0; + + fits_get_hdrspace(fits->fd, &keysexist, &morekeys, &status); + + // if no keys exist and not primary HDU, this really is an empty HDU + if (keysexist == 0) { + return true; + } + + return false; + +} + +static bool fitsClose(psFits* fits) +{ + int status = 0; + + if (fits != NULL) { + if (fits_close_file(fits->fd, &status)) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_BAD_FITS, true, + "Error while closing psFits object. CFITSIO error: %s", + fitsErr); + return false; + } + } + + return true; +} + +static void fitsFree(psFits* fits) +{ + (void)fitsClose(fits); +} + +bool psFitsClose(psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + bool status = fitsClose(fits); + psMemSetDeallocator(fits,NULL); + psFree(fits); + + return status; +} + +psFits* psFitsOpen(const char* name, const char* mode) +{ + int status = 0; + fitsfile *fptr = NULL; /* Pointer to the FITS file */ + + if (name == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified filename can not be NULL.")); + return NULL; + } + + /* check the mode to determine how to open/create file */ + int iomode; + bool newFile; + if (strcmp(mode,"r") == 0) { + iomode = READONLY; + newFile = false; + } else if (strcmp(mode,"rw") == 0 || strcmp(mode,"r+") == 0) { + iomode = READWRITE; + newFile = false; + } else if (strcmp(mode,"w") == 0 || strcmp(mode,"w+") == 0) { + iomode = READWRITE; + newFile = true; + } else if (strcmp(mode,"a") == 0|| strcmp(mode,"a+") == 0) { + iomode = READWRITE; + newFile = (access(name, F_OK) != 0); + } else { + // mode is not valid + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified mode, '%s', is invalid. Supported modes are r, r+, rw, w, w+, a, or a+.", + mode); + return NULL; + } + + if (newFile) { + /* Check if an existing file is in the way before creating file*/ + if (access(name, F_OK) == 0) { + // file exists, delete old one first + remove + (name); + } + + #if ( CFITSIO_DISKFILE == 1 ) + (void)fits_create_diskfile + #else + (void)fits_create_file + #endif + (&fptr, + name, + &status); + if (fptr == NULL || status != 0) { + char fitsErr[MAX_STRING_LENGTH] + ; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not create file,'%s'. CFITSIO Error: %s"), + name, fitsErr); + return NULL; + } + } else { + #if ( CFITSIO_DISKFILE == 1 ) + (void)fits_open_diskfile + #else + (void)fits_open_file + #endif + (&fptr, + name, + iomode, + &status); + if (fptr == NULL || status != 0) { + char fitsErr[MAX_STRING_LENGTH] + ; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not open file,'%s'. CFITSIO Error: %s"), + name, fitsErr); + return NULL; + } + } + + psFits* fits = psAlloc(sizeof(psFits)); + fits->fd = fptr; + fits->writable = (iomode == READWRITE); + psMemSetDeallocator(fits,(psFreeFunc)fitsFree); + + return fits; +} + +bool psMemCheckFits(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)fitsFree ); +} + + +bool psFitsMoveExtName(const psFits* fits, + const char* extname) +{ + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (extname == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified extension name can not be NULL.")); + return false; + } + + + if (fits_movnam_hdu(fits->fd, ANY_HDU, (char*)extname, 0, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, + _("Could not find HDU '%s'. CFITSIO Error: %s"), + extname, fitsErr); + return false; + } + + return true; +} + +bool psFitsMoveExtNum(const psFits* fits, + int extnum, + bool relative) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + int status = 0; + int hdutype = 0; + + if (relative) { + fits_movrel_hdu(fits->fd, extnum, &hdutype, &status); + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, + _("Could not move %d HDUs from current position. CFITSIO Error: %s"), + extnum, fitsErr); + return false; + } + } else { + fits_movabs_hdu(fits->fd, extnum+1, &hdutype, &status); + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, + _("Could not move to specified HDU #%d. CFITSIO Error: %s"), + extnum, fitsErr); + return false; + } + } + + return true; +} + +bool psFitsMoveLast(psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + int size = psFitsGetSize(fits); + if (size == 0) { // empty file -- no action needed + return true; + } else { + return psFitsMoveExtNum(fits,size-1,false); + } +} + +int psFitsGetExtNum(const psFits* fits) +{ + int hdunum; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return PS_FITS_TYPE_NONE; + } + + + return fits_get_hdu_num(fits->fd,&hdunum) - 1; +} + +psString psFitsGetExtName(const psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + int status = 0; + char name[MAX_STRING_LENGTH]; + + if (fits_read_key_str(fits->fd, "EXTNAME", name, NULL, &status) != 0) { + status = 0; + if (fits_read_key_str(fits->fd, "HDUNAME", name, NULL, &status) != 0) { + int num = psFitsGetExtNum(fits); + snprintf(name, MAX_STRING_LENGTH, "EXT-%3d",num); + } + } + return psStringCopy(name); +} + +bool psFitsSetExtName(psFits* fits, const char* name) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (name == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified extension name can not be NULL.")); + return false; + } + + int status = 0; + + if (fits_update_key_str(fits->fd, "EXTNAME", (char*)name, NULL, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; +} + +bool psFitsDeleteExtNum(psFits* fits, + int extnum, + bool relative) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (! fits->writable) { + psError(PS_ERR_IO, true, + _("The psFits object is not writable.")); + return false; + } + + // move to the specified HDU + if (! psFitsMoveExtNum(fits,extnum,relative) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Failed to delete HDU #%d", + extnum); + return false; + } + + int status = 0; + + // OK, now let's delete the HDU + if (fits_delete_hdu(fits->fd, NULL, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; +} + +bool psFitsDeleteExtName(psFits* fits, + const char* extname) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (! fits->writable) { + psError(PS_ERR_IO, true, + _("The psFits object is not writable.")); + return false; + } + + // move to the specified HDU + if (! psFitsMoveExtName(fits,extname) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Failed to delete HDU with the name '%s'", + extname); + return false; + } + + + int status = 0; + + // OK, now let's delete the HDU + if (fits_delete_hdu(fits->fd, NULL, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; +} + +int psFitsGetSize(const psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return 0; + } + + int num = 0; + int status = 0; + + if (fits_get_num_hdus(fits->fd, &num, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, + _("Failed to determine the number of HDUs. CFITSIO Error: %s"), + fitsErr); + return 0; + } + + return num; +} + +psFitsType psFitsGetExtType(const psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return PS_FITS_TYPE_NONE; + } + + int status = 0; + int hdutype = PS_FITS_TYPE_NONE; + + if (fits_get_hdu_type(fits->fd, &hdutype, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, + _("Failed to determine an HDU type. CFITSIO Error: %s"), + fitsErr); + return PS_FITS_TYPE_NONE; + } + + if (hdutype == PS_FITS_TYPE_IMAGE && + psFitsGetExtNum(fits) > 0 && + isHDUEmpty(fits)) { + return PS_FITS_TYPE_ANY; + } + + return hdutype; +} + +bool psFitsTruncate(psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return PS_FITS_TYPE_NONE; + } + + if (! fits->writable) { + psError(PS_ERR_IO, true, + _("The psFits object is not writable.")); + return PS_FITS_TYPE_NONE; + } + + int newEnd = psFitsGetExtNum(fits); + + psFitsMoveLast(fits); + int end = psFitsGetExtNum(fits); + + // delete HDUs from end to beginning position + 1; + for (int lcv=end;lcv > newEnd; lcv--) { + if (! psFitsDeleteExtNum(fits,lcv,false)) { + // failed to delete an HDU!? + psError(PS_ERR_UNKNOWN, false, + "Failed to truncate file. HDU #%d out of %d could not be deleted.", + lcv,end); + return false; + } + } + + return true; +} + + +psDataType p_psFitsTypeFromCfitsio(int datatype) +{ + switch (datatype) { + case TBYTE: + return PS_TYPE_U8; + case TSBYTE: + return PS_TYPE_S8; + case TSHORT: + return PS_TYPE_S16; + case TUSHORT: + return PS_TYPE_U16; + case TLONG: + if (sizeof(long) == 8) { + return PS_TYPE_S64; + } + // no break + case TINT: + return PS_TYPE_S32; + case TULONG: + if (sizeof(unsigned long) == 8) { + return PS_TYPE_U64; + } + // no break + case TUINT: + return PS_TYPE_U32; + case TLONGLONG: + return PS_TYPE_S64; + case TFLOAT: + return PS_TYPE_F32; + case TDOUBLE: + return PS_TYPE_F64; + case TCOMPLEX: + return PS_TYPE_C32; + case TDBLCOMPLEX: + return PS_TYPE_C64; + case TLOGICAL: + return PS_TYPE_BOOL; + default: + psError(PS_ERR_IO, true, + "Unknown FITS datatype, %d.", + datatype); + return 0; + } +} + +bool p_psFitsTypeToCfitsio(psDataType type, int* bitPix, double* bZero, int* dataType) +{ + int bitpix; + int datatype; + double bzero = 0.0; + + switch (type) { + + case PS_TYPE_U8: + bitpix = BYTE_IMG; + datatype = TBYTE; + break; + + case PS_TYPE_S8: + bitpix = BYTE_IMG; + bzero = INT8_MIN; + datatype = TSBYTE; + break; + + case PS_TYPE_U16: + bitpix = SHORT_IMG; + bzero = -1.0 * INT16_MIN; + datatype = TUSHORT; + break; + + case PS_TYPE_S16: + bitpix = SHORT_IMG; + datatype = TSHORT; + break; + + case PS_TYPE_U32: + bitpix = LONG_IMG; + bzero = -1.0 * INT32_MIN; + datatype = TUINT; + break; + + case PS_TYPE_S32: + bitpix = LONG_IMG; + datatype = TINT; + break; + + case PS_TYPE_F32: + bitpix = FLOAT_IMG; + datatype = TFLOAT; + break; + + case PS_TYPE_F64: + bitpix = DOUBLE_IMG; + datatype = TDOUBLE; + break; + + case PS_DATA_STRING: + bitpix = BYTE_IMG; + datatype = TSTRING; + break; + + case PS_DATA_BOOL: + bitpix = BYTE_IMG; + datatype = TLOGICAL; + break; + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified type, %s, is not supported."), + typeStr); + return false; + } + } + + // pass back the requested parameters (NULL parameters are not set, of course). + if (bitPix != NULL) { + *bitPix = bitpix; + } + + if (dataType != NULL) { + *dataType = datatype; + } + + if (bZero != NULL) { + *bZero = bzero; + } + + return true; +} + + Index: /branches/rel-1-1/psLib/src/fits/psFits.h =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFits.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFits.h (revision 12167) @@ -0,0 +1,200 @@ +/* @file psFits.h + * @brief Contains Fits I/O routines + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.26 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_FITS_H +#define PS_FITS_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include +#include "psType.h" +#include "psArray.h" +#include "psVector.h" +#include "psMetadata.h" +#include "psImage.h" + +/** FITS HDU type. + * + * Enumeration for FITS HDU type. + * + */ +typedef enum { + PS_FITS_TYPE_NONE = -1, ///< Unknown HDU type + PS_FITS_TYPE_IMAGE = IMAGE_HDU, ///< Image HDU type + PS_FITS_TYPE_BINARY_TABLE = BINARY_TBL, ///< Binary table HDU type + PS_FITS_TYPE_ASCII_TABLE = ASCII_TBL, ///< ASCII table HDU type + PS_FITS_TYPE_ANY = ANY_HDU ///< Any HDU type +} psFitsType; + +/** FITS file object. + * + * This object should be considered opaque to the user; no item in this + * struct should be accessed directly. + * + */ +typedef struct +{ + fitsfile* fd; ///< the CFITSIO fits files handle. + bool writable; ///< Is the file writable? +} +psFits; + +/** Opens a FITS file and allocates the associated psFits object. + * + * @return psFits* new psFits object for the FITS files specified or + * NULL if the open of the FITS file failed + */ +psFits* psFitsOpen( + const char* filename, ///< the FITS file name + const char* mode + /**< File open mode. Could be one of the following: + * 'r' (read only), + * 'r+' (read & write), + * 'rw' (same as 'r+'), or + * 'w' (create new file for writing) + */ +); + +/** Closes a FITS file. + * + * @return bool TRUE if FITS file was successfully closed, otherwise FALSE + */ +bool psFitsClose( + psFits* fits ///< psFits object to close +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psFits structure, false + * otherwise. + */ +bool psMemCheckFits( + psPtr ptr ///< the pointer whose type to check +); + + +/** Moves the FITS HDU to the specified extension name. + * + * @return bool TRUE if the extension name was found and move was + * successful, otherwise FALSE + */ +bool psFitsMoveExtName( + const psFits* fits, ///< the psFits object to move + const char* extname ///< the extension name +); + +/** Moves the FITS HDU to the specified extension number + * + * @return bool TRUE if the extension number was found and move was + * successful, otherwise FALSE + */ +bool psFitsMoveExtNum( + const psFits* fits, ///< the psFits object to move + int extnum, ///< the extension number to move to (zero is primary HDU) + bool relative ///< if true, extnum is a relative number to the current position +); + +/** Moves the FITS HDU to the end of the file + * + * @return bool TRUE if the move was successful, otherwise FALSE +*/ +bool psFitsMoveLast( + psFits* fits ///< the psFits object to move +); + +/** Get the current extension number, where 0 is the primary HDU. + * + * @return int Current HDU number of the psFits file or < 0 if an error + * occurred. + */ +int psFitsGetExtNum( + const psFits* fits ///< the psFits object +); + +/** Get the current extension name. + * + * @return int Current HDU name of the psFits file or NULL if an + * error occurred. + */ +psString psFitsGetExtName( + const psFits* fits ///< the psFits object +); + +/** Set the current extension's name + * + * @return bool TRUE if the extension was successfully set, otherwise FALSE. + */ +bool psFitsSetExtName( + psFits* fits, ///< the psFits object + const char* name ///< the extension name +); + +/** Get the total number of HDUs in the FITS file. + * + * @return int The total number of HDUs in the FITS file or < 0 if an + * error occurred. + */ +int psFitsGetSize( + const psFits* fits ///< the psFits object +); + +/** Remove the an HDU as specified by number + * + * @return bool TRUE if the specified HDU was removed, otherwise FALSE + */ +bool psFitsDeleteExtNum( + psFits* fits, ///< the psFits object + int extnum, ///< the extension number to delete (zero is primary HDU) + bool relative ///< if true, extnum is a relative number to the current position +); + +/** Remove the an HDU as specified by extension name + * + * @return bool TRUE if the specified HDU was removed, otherwise FALSE + */ +bool psFitsDeleteExtName( + psFits* fits, ///< the psFits object + const char* extname ///< the extension name to delete +); + +/** Get the extension type of the current HDU. + * + * @return psFitsType The type of the current HDU. If PS_FITS_TYPE_UNKNOWN, + * the type could not be determined. + */ +psFitsType psFitsGetExtType( + const psFits* fits ///< the psFits object +); + +/** Delete all extensions after the current position + * + * @return bool TRUE if the operation was successful, otherwise FALSE + */ +bool psFitsTruncate( + psFits* fits ///< the psFits object +); + +// Return the psLib type, given a cfitsio data type +psDataType p_psFitsTypeFromCfitsio(int datatype // cfitsio data type + ); + +// Return the cfitsio data type, given a psLib type +bool p_psFitsTypeToCfitsio(psDataType type, // psLib data type + int* bitPix, // The corresponding BITPIX (returned) + double* bZero, // The corresponding BZERO (returned) + int* dataType// The corresponding cfitsio data type (returned) + ); + +/// @} +#endif // #ifndef PS_FITS_H Index: /branches/rel-1-1/psLib/src/fits/psFitsHeader.c =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsHeader.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsHeader.c (revision 12167) @@ -0,0 +1,491 @@ +/** @file psFitsHeader.c + * + * @brief Contains Fits header I/O routines + * + * @ingroup FileIO + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.32 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-21 21:39:26 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psFits.h" +#include "string.h" +#include "strings.h" +#include "psError.h" + +#include "psImageStructManip.h" +#include "psMemory.h" +#include "psString.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psVector.h" + +#define MAX_STRING_LENGTH 256 // maximum length string for FITS routines + +// list of FITS header keys to ignore; NULL-terminated +static char* ignoreFitsKeys[] = {"", NULL}; + +// List of FITS header keys that may be duplicated; NULL-terminated +static char *duplicateFitsKeys[] = {"COMMENT", "HIERARCH", "HISTORY", NULL}; + +// List of FITS header keys not to write (handled by cfitsio); NULL-terminated +static char *noWriteFitsKeys[] = {"SIMPLE", "XTENSION", "BITPIX", "NAXIS", "EXTNAME", "BSCALE", "BZERO", + "TFIELDS", NULL}; +// List of the start of FITS header keys not to write (handled by cfitsio); NULL-terminated +static char *noWriteFitsKeyStarts[] = {"NAXIS", "TTYPE", "TFORM", NULL}; + +// List of FITS header keys to be written with fits_write_comment + +psMetadata* psFitsReadHeader(psMetadata* out, + const psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + if (out == NULL) { + out = psMetadataAlloc(); + } + + // Get number of key names + int numKeys = 0; // Number of keywords + int keyNum = 0; // Current key number + int status = 0; // Status of cfitsio calls + fits_get_hdrpos(fits->fd, &numKeys, &keyNum, &status); + + // Get each key name. Keywords start at one. + for (int i = 1; i <= numKeys; i++) { + char keyName[MAX_STRING_LENGTH];// Keyword name + char keyValue[MAX_STRING_LENGTH]; // Corresponding value + char keyComment[MAX_STRING_LENGTH]; // Corresponding comment + fits_read_keyn(fits->fd, i, keyName, keyValue, keyComment, &status); + + // Check to see if the keyword should be ignored + bool ignoreKey = false; // Ignore this keyword? + for (int i = 0; ignoreFitsKeys[i] && !ignoreKey; i++) { + if (strcmp(keyName, ignoreFitsKeys[i]) == 0) { + ignoreKey = true; + } + } + if (ignoreKey) { + // We're done here; skip to the next key + continue; + } + + // Check to see if the keyword should be duplicated + int dupFlag = 0; // Duplicate flag + for (int i = 0; duplicateFitsKeys[i] && !dupFlag; i++) { + if (strcmp(keyName, duplicateFitsKeys[i]) == 0) { + dupFlag = PS_META_DUPLICATE_OK; + } + } + + char keyType; // Type of key; from cfitsio + if (keyValue[0] != 0) { // blank values are not handled by fits_get_keytype + fits_get_keytype(keyValue, &keyType, &status); + } else { + keyType = 'C'; + } + if (status != 0) { + break; + } + + bool success; // Was the add to the metadata successful? + switch (keyType) { + case 'X': // bit + case 'B': // byte + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_S8 | dupFlag, keyComment, + atoi(keyValue)); + break; + case 'I': // short int. + // This is the default type that cfitsio reports whenever it doesn't know what it is. + // Trap NAN, INF and -INF, which cfitsio doesn't handle. + if (strncasecmp(keyValue, "NAN", 3) == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)NAN); + } else if (strncasecmp(keyValue, "INF", 3) == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)INFINITY); + } else if (strncasecmp(keyValue, "-INF", 4) == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)-INFINITY); + } else { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_S32 | dupFlag, keyComment, + atoi(keyValue)); + } + break; + case 'J': // int. + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_S32 | dupFlag, keyComment, + atoi(keyValue)); + break; + case 'U': // unsigned int. + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_U32 | dupFlag, keyComment, + atol(keyValue)); + break; + + case 'K': // long int. can't all fit in a psS32, put in psF64 + case 'F': + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F64 | dupFlag, keyComment, + atof(keyValue)); + break; + case 'C': { + char *keyValueFixed = keyValue; // Fixed version of the string + // remove the single-quotes at front/end + if (keyValueFixed[0] == '\'' && keyValueFixed[strlen(keyValue)-1] == '\'') { + keyValue[strlen(keyValue)-1] = '\0'; // Remove the trailing quote + keyValueFixed += 1; // Advance past the leading quote + } + // Remove trailing spaces, which are not significant, according to the FITS standard + // http://archive.stsci.edu/fits/fits_standard/node31.html + char *lastSpace = NULL; // The last space in the string + while (strlen(keyValueFixed) > 1 && (lastSpace = strrchr(keyValueFixed, ' ')) && + lastSpace[1] == '\0') { + // This is a trailing space, not a leading space. + lastSpace[0] = '\0'; // Truncate the string here + } + + // Need to trap NAN, INF and -INF written by psFitsWriteHeader. + // cfitsio won't write these, so we write them as strings, and then have to trap them on read. + if (strcasecmp(keyValueFixed, "NAN") == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)NAN); + } else if (strcasecmp(keyValueFixed, "INF") == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)INFINITY); + } else if (strcasecmp(keyValueFixed, "-INF") == 0) { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_F32 | dupFlag, keyComment, + (psF32)-INFINITY); + } else { + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_STRING | dupFlag, keyComment, + keyValueFixed); + } + break; + } + case 'L': { + bool temp = (keyValue[0] == 'T') ? 1 : 0; + success = psMetadataAdd(out, PS_LIST_TAIL, keyName, PS_DATA_BOOL | dupFlag, keyComment, temp); + break; + } + default: + psError(PS_ERR_IO, true, _("Specified FITS metadata type, %c, is not supported."), keyType); + return out; + } + + if (!success) { + psError(PS_ERR_UNKNOWN, false, _("Failed to add metadata item, %s."), keyName); + return out; + } + + } + + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, _("Failed to add metadata item, %s."), fitsErr); + return false; + } + + return out; +} + +psMetadata* psFitsReadHeaderSet(psMetadata* out, const psFits* fits) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psFits object can not NULL.")); + psFree(out); + return NULL; + } + + if (out == NULL) { + out = psMetadataAlloc(); + } + + int size = psFitsGetSize(fits); + + int origPosition = psFitsGetExtNum(fits); + + for (int lcv=0; lcv < size; lcv++) { + psFitsMoveExtNum(fits, lcv, false); + + char* name = NULL; + if (lcv == 0) { + name = psStringCopy("PHU"); + } else { + name = psFitsGetExtName(fits); + } + + psMetadata* header = psFitsReadHeader(NULL, fits); + if (name != NULL && header != NULL) { + psMetadataAddMetadata(out, PS_LIST_TAIL, name, 0, "FITS Header", header); + } else { + psWarning("Failed to read HDU#%d header data.", + lcv); + } + + psFree(name); + psFree(header); + } + + // reposition to the original position + psFitsMoveExtNum(fits, origPosition, false); + + return out; +} + +static bool fitsWriteHeader(psFits *fits, // The FITS file handle + const psMetadata *output, // Metadata that is to be output into the FITS file + bool keyStarts // Write out the key starts? + ) +{ + int status = 0; // Status of cfitsio calls + bool simple = true; // If SIMPLE is T, then the file should conform to the FITS standard + psMetadataItem *simpleItem = psMetadataLookup(output, "SIMPLE"); // SIMPLE in the header + if (simpleItem) { + // We allow the user to write SIMPLE, but it must be boolean + if (simpleItem->type != PS_DATA_BOOL) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "SIMPLE in a FITS header must be of boolean type: " + "not %x --- assuming TRUE.\n", simpleItem->type); + int value = false; // Temporary holder for boolean + fits_update_key(fits->fd, TLOGICAL, "SIMPLE", &value, + "File does not conform to FITS standard", &status); + simple = false; + } else if (!simpleItem->data.B) { + simple = false; + int value = false; // Temporary holder for boolean + fits_update_key(fits->fd, TLOGICAL, "SIMPLE", &value, + "File does not conform to FITS standard", &status); + } + // SIMPLE = T is taken care of by cfitsio. + } + + // Traverse the metadata list and add each key. + psListIterator* iter = psListIteratorAlloc(output->list, PS_LIST_HEAD, true); // Iterator + psMetadataItem* item; // Item from iteration + while ((item = psListGetAndIncrement(iter))) { + // Check to see if the item should be ignored + if (simple) { + // We ignore particular (required) keywords, because these are written by CFITSIO + // Furthermore, users tend to supply FITS headers that are wrong (e.g., after binning down the + // image, the NAXISn haven't been changed; or after converting to F32, the BITPIX hasn't been + // changed) so we'll take care of that for them. + bool writeKey = true; // Should we write this keyword? + for (int i = 0; noWriteFitsKeys[i] && writeKey; i++) { + if (strcmp(item->name, noWriteFitsKeys[i]) == 0) { + writeKey = false; + } + } + if (!writeKey) { + // Don't write it; skip to the next key + continue; + } + if (keyStarts) { + // Also block out TTYPEn, NAXISn, etc --- keywords that start with a certain sequence. + // We want to do this when writing an image or table, since it guarantees that the NAXISn etc + // that go in are correct. However, when we're writing a "blank" HDU (header only), we want + // to preserve NAXISn etc for reference, so we don't do this. + for (int i = 0; noWriteFitsKeyStarts[i] && writeKey; i++) { + if (strncmp(item->name, noWriteFitsKeyStarts[i], strlen(noWriteFitsKeyStarts[i])) == 0) { + writeKey = false; + } + } + if (!writeKey) { + // Don't write it; skip to the next key + continue; + } + } + } + + if (strcmp(item->name, "COMMENT") == 0) { + fits_write_comment(fits->fd, item->comment, &status); + } else if (strcmp(item->name, "HISTORY") == 0) { + fits_write_history(fits->fd, item->comment, &status); + } else { + // A regular FITS header + switch (item->type) { + case PS_DATA_BOOL: { + int value = item->data.B; + fits_update_key(fits->fd, TLOGICAL, item->name, &value, item->comment, &status); + break; + } + case PS_DATA_S8: + fits_update_key(fits->fd, TBYTE, item->name, &item->data.S8, item->comment, &status); + break; + case PS_DATA_S16: + fits_update_key(fits->fd, TSHORT, item->name, &item->data.S16, item->comment, &status); + break; + case PS_DATA_S32: + fits_update_key(fits->fd, TINT, item->name, &item->data.S32, item->comment, &status); + break; + case PS_DATA_U8: { + unsigned short int temp = item->data.U8; + fits_update_key(fits->fd, TUSHORT, item->name, &temp, item->comment, &status); + } + break; + case PS_DATA_U16: + fits_update_key(fits->fd, TUSHORT, item->name, &item->data.U16, item->comment, &status); + break; + case PS_DATA_U32: + fits_update_key(fits->fd, TUINT, item->name, &item->data.U32, item->comment, &status); + break; + case PS_DATA_F32: { + int infCheck = 0; // Result of isinf() + if (isnan(item->data.F32)) { + fits_update_key(fits->fd, TSTRING, item->name, "NaN", item->comment, &status); + } else if ((infCheck = isinf(item->data.F32)) != 0) { + if (infCheck == 1) { + fits_update_key(fits->fd, TSTRING, item->name, "Inf", item->comment, &status); + } else { + fits_update_key(fits->fd, TSTRING, item->name, "-Inf", item->comment, &status); + } + } else { + fits_update_key(fits->fd, TFLOAT, item->name, &item->data.F32, item->comment, &status); + } + break; + } + case PS_DATA_F64: { + int infCheck = 0; // Result of isinf() + if (isnan(item->data.F64)) { + fits_update_key(fits->fd, TSTRING, item->name, "NaN", item->comment, &status); + } else if ((infCheck = isinf(item->data.F64)) != 0) { + if (infCheck == 1) { + fits_update_key(fits->fd, TSTRING, item->name, "Inf", item->comment, &status); + } else { + fits_update_key(fits->fd, TSTRING, item->name, "-Inf", item->comment, &status); + } + } else { + fits_update_key(fits->fd, TDOUBLE, item->name, &item->data.F64, item->comment, &status); + } + break; + } + case PS_DATA_STRING: + fits_update_key(fits->fd, TSTRING, item->name, item->data.V, item->comment, &status); + break; + default: // all other META types are ignored + psLogMsg(__func__, PS_LOG_WARN, "Attempt to write metadata type %x to FITS header ignored.\n", + item->type); + break; + } + } + + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, _("Could not write data to file. CFITSIO Error: %s"), fitsErr); + return false; + } + } + + psFree(iter); + + return true; +} + +bool psFitsWriteHeader(psFits *fits, + const psMetadata *output + ) +{ + if (!fits) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psFits object can not NULL.")); + return false; + } + + if (!output) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psMetadata was NULL. Need a non-NULL psMetadata for operation to be performed.")); + return false; + } + + return fitsWriteHeader(fits, output, true); +} + +bool psFitsWriteBlank(psFits* fits, + const psMetadata* output, + const char *extname + ) +{ + if (!fits) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psFits object can not NULL.")); + return false; + } + + // We allow output == NULL in order to write a minimal header. + + // Create a dummy image HDU for the primary HDU + int status = 0; // Status of cfitsio + + psFitsMoveLast(fits); + + int hdus = psFitsGetSize(fits); // Number of HDUs in file + if (hdus == 0) { + // We're creating the first image + fits_create_img(fits->fd, 16, 0, NULL, &status); + } else { + // Insert after the current position + fits_insert_img(fits->fd, 16, 0, NULL, &status); + } + + if (status) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, "Unable to create blank header.\n%s\n", fitsErr); + return false; + } + + if (output && !fitsWriteHeader(fits, output, false)) { + psError(PS_ERR_IO, false, "Unable to write FITS header.\n"); + return false; + } + + if (extname && strlen(extname)) { + psFitsSetExtName(fits, extname); + } + + char buffer[10]; + fits_write_img(fits->fd, TSHORT, 1, 0, buffer, &status); + + return true; +} + +bool psFitsHeaderValidate(psMetadata *header) +{ + if (header == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psMetadata was NULL. Need a non-NULL psMetadata for operation to be performed.")); + return false; + } + + // Traverse the metadata list and inspect at each key + psListIterator* iter = psListIteratorAlloc(header->list, PS_LIST_HEAD, true); // Iterator + psMetadataItem* item; // Item from iteration + bool valid = true; // Are all items valid? + while ((item = psListGetAndIncrement(iter))) { + if (item->type > PS_DATA_STRING) { // i.e., a non-primitive type + valid = false; + } + + if (strlen(item->name) > 8) { + item->name[8] = '\0'; // truncate to 8 characters + } + + fits_uppercase(item->name); // make uppercase + + // now, let's see if CFITSIO thinks this is a good keyword... + int status = 0; // Status from cfitsio calls + if (fits_test_keyword(item->name,&status) != 0) { + valid = false; + } + } + psFree(iter); + + return valid; +} Index: /branches/rel-1-1/psLib/src/fits/psFitsHeader.h =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsHeader.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsHeader.h (revision 12167) @@ -0,0 +1,69 @@ +/* @file psFitsHeader.h + * @brief Contains Fits header I/O routines + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.10 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_FITSHEADER_H +#define PS_FITSHEADER_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include "psFits.h" +#include "psMetadata.h" + +/** Reads the header of the current HDU. + * + * @return psMetadata* the header data + */ +psMetadata* psFitsReadHeader( + psMetadata* out, + ///< The psMetadata to add the header data. If null, a new psMetadata is created. + const psFits* fits ///< the psFits object +); + +/** Reads the header of all HDUs. The current HDU is not changed. + * + * @return psMetadata* the header data set as a number of metadata entries + */ +psMetadata* psFitsReadHeaderSet( + psMetadata* out, ///< output metadata or NULL if new psMetadata is to be created. + const psFits* fits ///< the psFits object +); + +/** Writes the values of the metadata to the current HDU header. + * Doesn't check if the header has to be created. + * + * @return bool if TRUE, the write was successful, otherwise FALSE. + */ +bool psFitsWriteHeader( + psFits* fits, ///< the psFits object + const psMetadata* output ///< the psMetadata data in which to write +); + +/** Writes a "blank" --- a header only, with no image or table. + * + * @return bool if TRUE, the write was successful, otherwise FALSE. + */ +bool psFitsWriteBlank( + psFits* fits, ///< the psFits object + const psMetadata* output, ///< the psMetadata data in which to write + const char *extname +); + +/** psFitsHeaderValidate validates the supplied header so that it is in + * compliance to the FITS standard for header keyword names and types. + * + * @return bool TRUE if the resulting header conforms to the FITS + * standard, otherwise FALSE + */ +bool psFitsHeaderValidate(psMetadata *header); + +/// @} +#endif // #ifndef PS_FITS_H Index: /branches/rel-1-1/psLib/src/fits/psFitsImage.c =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsImage.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsImage.c (revision 12167) @@ -0,0 +1,653 @@ +/** @file psFitsImage.c + * + * @brief Contains Fits I/O routines + * + * @ingroup FileIO + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.17 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psFits.h" +#include "psAssert.h" +#include "psFitsImage.h" +#include "psError.h" + +#include "psImageStructManip.h" +#include "psMemory.h" +#include "psString.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psVector.h" + +#include "psFitsHeader.h" + +#define MAX_STRING_LENGTH 256 // maximum length string for FITS routines + +// Information required to read a FITS file +typedef struct +{ + int nAxis; // Number of axes + int bitPix; // Bits per pixel + long nAxes[3]; // Length of each axis + long firstPixel[3]; // lower-left corner of image subset + long lastPixel[3]; // upper-right corner of image subset + long increment[3]; // increment for image subset + int fitsDatatype; // cfitsio data type + int psDatatype; // psLib data type +} +p_psFitsReadInfo; + +static p_psFitsReadInfo *p_psFitsReadInfoAlloc(const psFits *fits, // The FITS file handle + psRegion region, // Region to read + int z // z-plane to read in cube + ) +{ + PS_ASSERT_PTR_NON_NULL(fits, NULL); + PS_ASSERT_INT_NONNEGATIVE(z, NULL); + + p_psFitsReadInfo *info = psAlloc(sizeof(p_psFitsReadInfo)); + memset(info, 0, sizeof(p_psFitsReadInfo)); + + int status = 0; // CFITSIO status + char fitsErr[80]; // CFITSIO error message string + + // check to see if we even are positioned on an image HDU + int hduType; // Type of HDU + if (fits_get_hdu_type(fits->fd, &hduType, &status) != 0) { + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + goto bad; + } + if (hduType != IMAGE_HDU) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be an image.")); + goto bad; + } + + // Get the data type 'bitPix' from the FITS image + if (fits_get_img_equivtype(fits->fd, &info->bitPix, &status) != 0) { + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine image data type. CFITSIO Error: %s"), + fitsErr); + goto bad; + } + + /* Get the dimensions 'nAxis' from the FITS image */ + if (fits_get_img_dim(fits->fd, &info->nAxis, &status) != 0) { + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine image dimensions. CFITSIO Error: %s"), + fitsErr); + goto bad; + } + + /* Validate the number of axis */ + if ((info->nAxis < 2) || (info->nAxis > 3)) { + psError(PS_ERR_IO, true, + _("Image number of dimensions, %d, is not valid. Only two or three dimensions supported for FITS I/O."), + info->nAxis); + goto bad; + } + + /* Get the Image size from the FITS file */ + if (fits_get_img_size(fits->fd, info->nAxis, info->nAxes, &status) != 0) { + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine image size. CFITSIO Error: %s"), + fitsErr); + goto bad; + } + + info->firstPixel[0] = region.x0 + 1; + info->firstPixel[1] = region.y0 + 1; + info->firstPixel[2] = z + 1; + + if (region.x1 > 0) { + info->lastPixel[0] = region.x1; + } else { + info->lastPixel[0] = info->nAxes[0] + region.x1; // n.b., region.x1 < 0 + } + if (region.y1 > 0) { + info->lastPixel[1] = region.y1; + } else { + info->lastPixel[1] = info->nAxes[1] + region.y1; // n.b., region.y1 < 0 + } + info->lastPixel[2] = z + 1; + + info->increment[0] = 1; + info->increment[1] = 1; + info->increment[2] = 1; + + switch (info->bitPix) { + case BYTE_IMG: + info->psDatatype = PS_TYPE_U8; + info->fitsDatatype = TBYTE; + break; + case SBYTE_IMG: + info->psDatatype = PS_TYPE_S8; + info->fitsDatatype = TSBYTE; + break; + case USHORT_IMG: + info->psDatatype = PS_TYPE_U16; + info->fitsDatatype = TUSHORT; + break; + case SHORT_IMG: + info->psDatatype = PS_TYPE_S16; + info->fitsDatatype = TSHORT; + break; + case ULONG_IMG: + info->psDatatype = PS_TYPE_U32; + info->fitsDatatype = TUINT; + break; + case LONG_IMG: + info->psDatatype = PS_TYPE_S32; + info->fitsDatatype = TINT; + break; + case LONGLONG_IMG: + info->psDatatype = PS_TYPE_S64; + info->fitsDatatype = TLONGLONG; + break; + case FLOAT_IMG: + info->psDatatype = PS_TYPE_F32; + info->fitsDatatype = TFLOAT; + break; + case DOUBLE_IMG: + info->psDatatype = PS_TYPE_F64; + info->fitsDatatype = TDOUBLE; + break; + default: + psError(PS_ERR_IO, true, + _("FITS image type, BITPIX=%d, is not supported."), + info->bitPix); + goto bad; + } + + return info; + + // Common error cleanup +bad: + psFree(info); + return NULL; +} + +// Read into an extant image of just the right size +static bool fitsReadImage(psImage *output, // Output image + const psFits *fits, // FITS file handle + p_psFitsReadInfo *info // Info on how to read + ) +{ + // n.b., this assumes contiguous image buffer + assert(output); + assert(fits); + assert(info); + assert(output->numCols == info->lastPixel[0] - info->firstPixel[0] + 1); + assert(output->numRows == info->lastPixel[1] - info->firstPixel[1] + 1); // Right size + assert(!output->parent); // No parents means the buffer is contiguous + + int anynull = 0; // Are there any NULLs in the data? + int status = 0; // cfitsio status + if (fits_read_subset(fits->fd, info->fitsDatatype, info->firstPixel, info->lastPixel, + info->increment, NULL, output->data.V[0], &anynull, &status) != 0) { + char fitsErr[80]; // CFITSIO error message string + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Reading FITS file failed. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; +} + +psImage* psFitsReadImage(const psFits *fits, // the psFits object + psRegion region, // the region in the FITS image to read + int z // the z-plane in the FITS image cube to read + ) +{ + p_psFitsReadInfo *info = p_psFitsReadInfoAlloc(fits, region, z); + + psImage *output = psImageAlloc(info->lastPixel[0] - info->firstPixel[0] + 1, + info->lastPixel[1] - info->firstPixel[1] + 1, + info->psDatatype); + + if (!fitsReadImage(output, fits, info)) { + psFree(info); + psFree(output); + return NULL; + } + + psFree(info); + return output; +} + +psImage* psFitsReadImageBuffer(psImage *output, // Output image buffer + const psFits *fits, // the psFits object + psRegion region, // the region in the FITS image to read + int z // the z-plane in the FITS image cube to read + ) +{ + if (output && output->parent) { + psError(PS_ERR_IO, true, "Unable to read into a buffer for a child image.\n"); + return NULL; + } + + p_psFitsReadInfo *info = p_psFitsReadInfoAlloc(fits, region, z); + + output = psImageRecycle(output, info->lastPixel[0] - info->firstPixel[0] + 1, + info->lastPixel[1] - info->firstPixel[1] + 1, + info->psDatatype); + + if (!fitsReadImage(output, fits, info)) { + psFree(info); + psFree(output); + return NULL; + } + + psFree(info); + return output; +} + +bool psFitsWriteImage(psFits* fits, + const psMetadata* header, + const psImage* input, + int numZPlanes, + const char* extname) +{ + // this is equivalent to insert after the last HDU + + psFitsMoveLast(fits); + return psFitsInsertImage(fits,header,input,numZPlanes,extname,true); +} + +bool psFitsInsertImage(psFits* fits, + const psMetadata* header, + const psImage* input, + int numZPlanes, + const char* extname, + bool after) +{ + + if (!fits) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psFits object can not NULL.")); + return false; + } + + if (!input) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psImage was NULL. Need a non-NULL psImage for operation to be performed.")); + return false; + } + + int numCols = input->numCols; // Number of columns for image + int numRows = input->numRows; // Number of rows for image + int status = 0; // Status from cfitsio + + // determine the FITS-equivalent parameters + int bitPix; // Bits per pixel + double bZero; // Zero offset + int dataType; // cfitsio data type + if (! p_psFitsTypeToCfitsio(input->type.type, &bitPix, &bZero, &dataType) ) { + return false; + } + + int naxis = 3; // Number of axes + long naxes[3]; // Length of each axis + naxes[0] = numCols; + naxes[1] = numRows; + naxes[2] = numZPlanes; + + if (numZPlanes < 2) { + naxis = 2; + } + + // Create the image HDU + int hdus = psFitsGetSize(fits); // Number of HDUs in file + if (hdus == 0) { + // We're creating the first image + fits_create_img(fits->fd, bitPix, naxis, naxes, &status); + } else { + if (!after) { + if (psFitsGetExtNum(fits) == 0) { + // We're creating a replacement primary HDU. + // Set status to signal fits_insert_img to insert a new primary HDU + status = PREPEND_PRIMARY; + } else { + // Move back one to perform an insert after the previous HDU + psFitsMoveExtNum(fits, -1, true); + } + } + // Insert after the current position + fits_insert_img(fits->fd, bitPix, naxis, naxes, &status); + } + + if (header && !psFitsWriteHeader(fits, header)) { + psError(PS_ERR_IO, false, "Unable to write FITS header.\n"); + return false; + } + + if (bZero != 0) { // set the bscale/bzero + fits_write_key_dbl(fits->fd, "BZERO", bZero, 12, "Pixel Value Offset", &status); + fits_write_key_dbl(fits->fd, "BSCALE", 1.0, 12, "Pixel Value Scale", &status); + fits_set_bscale(fits->fd, 1.0, bZero, &status); + } + + // write the header, if any. + if (extname && strlen(extname) > 0) { + psFitsSetExtName(fits,extname); + } + + if (input->parent == NULL) { // if no parent, assume that the image data is contiguous + fits_write_img(fits->fd, + dataType, // datatype + 1, // writing to the first z-plane + numCols*numRows, // number of elements to write, i.e., the whole image + input->data.V[0], // the data + &status); + } else { // image data may not be contiguous; write one row at a time + int firstPixel = 1; + for (int row = 0; row < numRows; row++) { + fits_write_img(fits->fd, + dataType, // datatype + firstPixel, + numCols, // number of elements to write, i.e., one row's worth + input->data.V[row],// the raw row data + &status); + firstPixel += numCols; // move to next row + } + } + + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; + +} + +bool psFitsUpdateImage(psFits* fits, + const psImage* input, + int x0, + int y0, + int z) +{ + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psImage was NULL. Need a non-NULL psImage for operation to be performed.")); + return false; + } + + // check to see if we are positioned on an image HDU + int hduType; + if ( fits_get_hdu_type(fits->fd, &hduType, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + if (hduType != IMAGE_HDU) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be an image.")); + return NULL; + } + + int numCols = input->numCols; + int numRows = input->numRows; + + // determine the FITS-equivalent parameters + int bitPix; + double bZero; + int dataType; + if (! p_psFitsTypeToCfitsio(input->type.type, &bitPix, &bZero, &dataType) ) { + return false; + } + + //check to see if the HDU has the same datatype + int fileBitpix; + int naxis; + long nAxes[3]; + nAxes[2] = 1; + fits_get_img_param(fits->fd, 3, &fileBitpix, &naxis, nAxes, &status); + + //check to see if the HDU has the same datatype + if (bitPix != fileBitpix) { + char* fitsTypeStr; + char* imageTypeStr; + PS_TYPE_NAME(fitsTypeStr,fileBitpix); + PS_TYPE_NAME(imageTypeStr,input->type.type); + psError(PS_ERR_IO, true, + _("Can not update a %s image given a %s image."), + fitsTypeStr, imageTypeStr); + return false; + } + + //check if the HDU has the z-plane requested + if (z >= nAxes[2]) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Current FITS HDU has %ld z-planes, but z-plane %d was specified."), + nAxes[2], z); + return false; + } + + // determine the region in the FITS file domain + long firstPixel[3]; + long lastPixel[3]; + + firstPixel[0] = x0 + 1; + firstPixel[1] = y0 + 1; + firstPixel[2] = z + 1; + + lastPixel[0] = x0 + numCols; + lastPixel[1] = y0 + numRows; + lastPixel[2] = z + 1; + + if (firstPixel[0] < 1 || firstPixel[0] > nAxes[0] || + firstPixel[1] < 1 || firstPixel[1] > nAxes[1] || + lastPixel[0] < 1 || lastPixel[0] > nAxes[0] || + lastPixel[1] < 1 || lastPixel[1] > nAxes[1]) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Input image [size of %ix%i] at position (%i,%i) does not all lay in the %lix%li FITS image.", + numCols, numRows, + x0, y0, + nAxes[0], nAxes[1]); + return false; + } + + fits_write_subset(fits->fd, dataType, firstPixel, lastPixel, input->data.V[0], &status); + + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + return false; + } + + return true; +} + +psArray *psFitsReadImageCube(const psFits *fits, psRegion region) +{ + int nAxis = 0; // Number of axes + long nAxes[3]; // Number of pixels on each axis + int status = 0; // cfitsio status value + char fitsErr[80] = ""; // CFITSIO error message string + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + // Some of this replicates what is in psFitsReadImage, so it's a little inefficient. But it saves + // code replication, and should be sufficient for our needs. + + if (fits_get_img_dim(fits->fd, &nAxis, &status) != 0) { + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine image dimensions. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + if (nAxis == 2) { + psArray *images = psArrayAlloc(1); // Single image plane + images->data[0] = psFitsReadImage(fits, region, 0); + return images; + } + if (nAxis == 3) { + if (fits_get_img_size(fits->fd, nAxis, nAxes, &status) != 0) { + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine image size. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + psArray *images = psArrayAlloc(nAxes[2]); // Array of image planes + for (int i = 0; i < nAxes[2]; i++) { + images->data[i] = psFitsReadImage(fits, region, i); + } + + return images; + } + + // Bad dimensionality + psError(PS_ERR_IO, true, _("Image number of dimensions, %d, is not valid. Only two or three dimensions supported for FITS I/O."), nAxis); + return NULL; +} + +bool psFitsWriteImageCube(psFits *fits, psMetadata *header, const psArray *input, const char *extname) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psImage was NULL. Need a non-NULL psImage for operation to be performed.")); + return false; + } + + if (input->n == 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("The input array was empty.")); + return false; + } + + if (input->n == 1) { + // The problem reduces to one already solved + return psFitsWriteImage(fits, header, input->data[0], 1, extname); + } + + // Check that all images are of the same size + psImage *testImage = input->data[0];// First image off the array + int numCols = testImage->numCols; // Number of columns + int numRows = testImage->numRows; // Number of rows + for (int i = 1; i < input->n; i++) { + testImage = input->data[i]; + if (testImage->numCols != numCols || testImage->numRows != numRows) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("The sizes of images in the array differ.")); + return false; + } + } + + // Need to check the header to make sure NAXIS and NAXIS[1-3] are correct + psMetadata *headerCopy = NULL; // Copy of header + if (header) { + headerCopy = psMemIncrRefCounter(header); + } else { + headerCopy = psMetadataAlloc(); + } + bool update = psMetadataAddS32(headerCopy, PS_LIST_HEAD, "NAXIS", PS_META_REPLACE, "Dimensionality", 3) && + psMetadataAddS32(headerCopy, PS_LIST_HEAD, "NAXIS1", PS_META_REPLACE, "Number of columns", numCols) && + psMetadataAddS32(headerCopy, PS_LIST_HEAD, "NAXIS2", PS_META_REPLACE, "Number of rows", numRows) && + psMetadataAddS32(headerCopy, PS_LIST_HEAD, "NAXIS3", PS_META_REPLACE, "Number of image planes", + input->n); + if (! update) { + psError(PS_ERR_UNKNOWN, false, _("Failed to add metadata item, %s."), + "NAXIS, NAXIS1, NAXIS2, NAXIS3"); + psFree(headerCopy); + return false; + } + + // Now we can safely write the images out. + // The first is an psFitsImageWrite to create the extension. + // The next are psFitsImageUpdate to write into the extension. + if (! psFitsWriteImage(fits, headerCopy, input->data[0], input->n, extname)) { + psError(PS_ERR_UNKNOWN, false, _("Could not write image plane %d."), 0); + psFree(headerCopy); + return false; + } + psFree(headerCopy); // Free, or drop reference + + for (int i = 1; i < input->n; i++) { + if (! psFitsUpdateImage(fits, input->data[i], 0, 0, i)) { + psError(PS_ERR_UNKNOWN, false, _("Could not write image plane %d."), i); + return false; + } + } + + return true; +} + +bool psFitsUpdateImageCube(psFits *fits, const psArray *input, int x0, int y0) +{ + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psImage was NULL. Need a non-NULL psImage for operation to be performed.")); + return false; + } + + if (input->n == 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("The input array was empty.")); + return false; + } + + for (int i = 0; i < input->n; i++) { + if (! psFitsUpdateImage(fits, input->data[i], x0, y0, i)) { + psError(PS_ERR_UNKNOWN, false, _("Could not update image plane %d."), i); + return false; + } + } + + return true; +} + Index: /branches/rel-1-1/psLib/src/fits/psFitsImage.h =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsImage.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsImage.h (revision 12167) @@ -0,0 +1,86 @@ +/* @file psFitsImage.h + * @brief Contains Fits I/O routines + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_FITSIMAGE_H +#define PS_FITSIMAGE_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include "psFits.h" +#include "psType.h" +#include "psArray.h" +#include "psVector.h" +#include "psMetadata.h" +#include "psImage.h" + +/** Reads an image, given the desired region and z-plane. + * + * @return psImage* the read image or NULL if there was an error. + */ +psImage* psFitsReadImage( + const psFits* fits, ///< the psFits object + psRegion region, ///< the region in the FITS image to read + int z ///< the z-plane in the FITS image cube to read +); + +// Read an image into an extant buffer +psImage* psFitsReadImageBuffer(psImage *output, // Output image buffer + const psFits *fits, // the psFits object + psRegion region, // the region in the FITS image to read + int z // the z-plane in the FITS image cube to read + ); + +/** Writes an image, given the desired region and z-plane. + * + * @return bool TRUE is the write was successful, otherwise FALSE. + */ +bool psFitsWriteImage( + psFits* fits, ///< the psFits object + const psMetadata* header, ///< header items for the new HDU. Can be NULL. + const psImage* input, ///< the image to output + int depth, ///< the number of z-planes of the FITS image data cube + const char* extname ///< FITS extension name +); + +/** Writes an image, given the desired region and z-plane. A new IMAGE HDU is + * appended to the end of the FITS file. + * + * @return bool TRUE is the write was successful, otherwise FALSE. + */ +bool psFitsInsertImage( + psFits* fits, ///< the psFits object + const psMetadata* header, ///< header items for the new HDU. Can be NULL. + const psImage* input, ///< the image to output + int depth, ///< the number of z-planes of the FITS image data cube + const char* extname, ///< FITS extension name + bool after ///< if TRUE, inserts HDU after current HDU, otherwise before +); + +/** Updates the FITS file image, given the desired region and z-plane. a new + * IMAGE HDU is inserted before or after, depending on the AFTER parameter, + * the current HDU. + * + * @return bool TRUE is the write was successful, otherwise FALSE. + */ +bool psFitsUpdateImage( + psFits* fits, ///< the psFits object + const psImage* input, ///< the image to output + int x0, ///< psImage's x-axis origin in FITS image coordinates + int y0, ///< psImage's y-axis origin in FITS image coordinates + int z ///< the z-planes of the FITS image data cube to write +); + +psArray *psFitsReadImageCube(const psFits *fits, psRegion region); +bool psFitsWriteImageCube(psFits *fits, psMetadata *header, const psArray *input, const char *extname); +bool psFitsUpdateImageCube(psFits *fits, const psArray *input, int x0, int y0); + +/// @} +#endif // #ifndef PS_FITS_H Index: /branches/rel-1-1/psLib/src/fits/psFitsTable.c =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsTable.c (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsTable.c (revision 12167) @@ -0,0 +1,791 @@ +/** @file psFitsTable.c + * + * @brief Contains Fits I/O routines + * + * @ingroup FileIO + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.25 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:53 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include "psFits.h" +#include "string.h" +#include "psError.h" + +#include "psImageStructManip.h" +#include "psMemory.h" +#include "psString.h" +#include "psLogMsg.h" +#include "psTrace.h" +#include "psVector.h" +#include "psFitsTable.h" +#include "psFitsHeader.h" +#include "psAbort.h" +#include "psAssert.h" + +#define MAX_STRING_LENGTH 256 // maximum length string for FITS routines + + +psMetadata* psFitsReadTableRow(const psFits* fits, + int row) +{ + long numRows; + int numCols; + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + // check to see if we even are positioned on a table HDU + int hdutype; + fits_get_hdu_type(fits->fd,&hdutype, &status); + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + if (hdutype != ASCII_TBL && hdutype != BINARY_TBL) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be a table.")); + return NULL; + } + + // get the size of the FITS table + fits_get_num_rows(fits->fd, &numRows, &status); + fits_get_num_cols(fits->fd, &numCols, &status); + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Failed to determine the size of the current HDU table. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + psTrace("psLib.fits",5,"Table size is %ix%li\n",numCols, numRows); + // the row parameter in the proper range? + if (row < 0 || row >= numRows) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified row, %d, is not valid for current table of %ld rows."), + row, numRows); + return NULL; + } + + psMetadata* data = psMetadataAlloc(); + + int typecode; + long repeat; + long width; + char name[60]; + for (int col = 1; col <= numCols; col++) { + // get the column name + if (hdutype == BINARY_TBL) { + fits_get_bcolparms(fits->fd, col, name, + NULL, NULL, NULL, NULL, NULL, NULL, NULL, &status); + } else { + fits_get_acolparms(fits->fd, col, name, + NULL, NULL, NULL, NULL, NULL, NULL, NULL, &status); + } + // get the column type + fits_get_coltype(fits->fd, col, &typecode, &repeat, &width, &status); + + if (status == 0) { + + #define READ_TABLE_ROW_CASE(FITSTYPE, NATIVETYPE, TYPE, VECTYPE) \ + case FITSTYPE: { \ + if (repeat == 1) { \ + NATIVETYPE value; \ + int anynul = 0; \ + fits_read_col(fits->fd, FITSTYPE, col,row+1, \ + 1, 1, NULL, &value, &anynul, &status); \ + psTrace("psLib.fits",5,"Column #%i, '%s', is type %i, repeat %li, Value = %g\n", \ + col, name, typecode, repeat, (double)value); \ + psMetadataAdd(data,PS_LIST_TAIL, name, \ + PS_DATA_##TYPE, \ + "", (ps##TYPE)value); \ + } else { \ + NATIVETYPE* value = psAlloc(sizeof(NATIVETYPE)*repeat); \ + psVector* vec = psVectorAlloc(repeat,PS_TYPE_##VECTYPE); \ + int anynul = 0; \ + fits_read_col(fits->fd, FITSTYPE, col,row+1, \ + 1, repeat, NULL, value, &anynul, &status); \ + for (int lcv = 0; lcv < repeat; lcv++) { \ + vec->data.VECTYPE[lcv] = value[lcv]; \ + } \ + psMetadataAdd(data,PS_LIST_TAIL, name, PS_DATA_VECTOR, "", vec); \ + psFree(value); \ + psFree(vec); \ + } \ + break; \ + } + + switch (typecode) { + case TBYTE: + case TSHORT: + case TLONGLONG: + READ_TABLE_ROW_CASE(TLONG, long, S32,S32) + READ_TABLE_ROW_CASE(TFLOAT, float, F32,F32) + READ_TABLE_ROW_CASE(TDOUBLE, double, F64,F64) + READ_TABLE_ROW_CASE(TLOGICAL, bool, BOOL,S8); + case TSTRING: { + char* value = psAlloc(repeat+1); + int anynul = 0; + fits_read_col(fits->fd, TSTRING, col,row+1, + 1, 1, NULL, &value, &anynul, &status); + psTrace("psLib.fits",5,"Column #%i, '%s', is type %i, repeat %li, value = %s\n", + col, name, typecode, repeat, value); + if (anynul == 0) { + psMetadataAdd(data,PS_LIST_TAIL, name, + PS_DATA_STRING, + "", value); + } + psFree(value); + break; + } + default: + psWarning("Data type (%d) not supportted for column %d", + typecode, col); + + psTrace("psLib.fits", 2, + "Column %d or row %d was of a non primitive type, %d", + col, row, typecode); + } + } + + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Failed to retrieve table element (%d,%d). CFITSIO Error: %s"), + col,row,fitsErr); + psFree(data); + return NULL; + } + + } + + return data; +} + +psArray* psFitsReadTableColumn(const psFits* fits, + const char* colname) +{ + int colnum = 0; + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + // check to see if we even are positioned on a table HDU + int hdutype; + if ( fits_get_hdu_type(fits->fd,&hdutype, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + if (hdutype != ASCII_TBL && hdutype != BINARY_TBL) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be a table.")); + return NULL; + } + + // find the column by name + if ( fits_get_colnum(fits->fd, CASESEN, (char*)colname, &colnum, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Specified column, %s, was not found. CFITSIO Error: %s"), + colname, fitsErr); + return NULL; + } + + // get the number of rows + long numRows = 0; + fits_get_num_rows(fits->fd, &numRows, &status); + + // get the column length. + int width; + if ( fits_get_col_display_width(fits->fd, colnum, &width, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the datatype of the table column. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + // allocate the buffers + psArray* result = psArrayAlloc(numRows); + for (int row = 0; row < numRows; row++) { + result->data[row] = psAlloc((width+1)*sizeof(char)); + } + + fits_read_col_str(fits->fd, + colnum, + 1, // firstrow + 1, // firestelem + numRows, + "", // nulstr + (char**)result->data, + NULL, + &status); + + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Failed to read table column. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + return result; +} + +psVector* psFitsReadTableColumnNum(const psFits* fits, + const char* colname) +{ + int status = 0; + int colnum = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + // check to see if we even are positioned on a table HDU + int hdutype; + if ( fits_get_hdu_type(fits->fd,&hdutype, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + if (hdutype != ASCII_TBL && hdutype != BINARY_TBL) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be a table.")); + return NULL; + } + + // find the column by name + if ( fits_get_colnum(fits->fd, CASESEN, (char*)colname, &colnum, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Specified column, %s, was not found. CFITSIO Error: %s"), + colname, fitsErr); + return NULL; + } + + // get the number of rows + long numRows = 0; + fits_get_num_rows(fits->fd, + &numRows, + &status); + + // get the column datatype. + int typecode; + long repeat; + long width; + if ( fits_get_eqcoltype(fits->fd, colnum, &typecode, &repeat, &width, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the datatype of the table column. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + psVector* result = psVectorAlloc(numRows, p_psFitsTypeFromCfitsio(typecode)); + + fits_read_col(fits->fd, + typecode, + colnum, + 1 /* firstrow */, + 1 /* firstelem */, + numRows, + NULL, + (psPtr)(result->data.U8), + NULL, + &status); + + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Failed to read table column. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + return result; +} + + +psArray* psFitsReadTable(const psFits* fits) +{ + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return NULL; + } + + // check to see if we even are positioned on a table HDU + int hdutype; + if ( fits_get_hdu_type(fits->fd,&hdutype, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + if (hdutype != ASCII_TBL && hdutype != BINARY_TBL) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be a table.")); + return NULL; + } + + // get the size of the FITS table + long numRows = 0; + fits_get_num_rows(fits->fd, &numRows, &status); + if ( status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Failed to determine the size of the current HDU table. CFITSIO Error: %s"), + fitsErr); + return NULL; + } + + + psArray* table = psArrayAlloc(numRows); + + for (int row = 0; row < numRows; row++) { + psTrace("psLib.fits",5,"Reading row %i of %li\n",row, numRows); + table->data[row] = psFitsReadTableRow(fits,row); + } + + return table; +} + +bool psFitsWriteTable(psFits* fits, + const psMetadata* header, + const psArray* table, + const char *extname) +{ + psFitsMoveLast(fits); + return psFitsInsertTable(fits, header, table, extname, true); +} + + +// Return the size of the column +static inline size_t columnSize(const psMetadataItem *item // Item for which to get the size + ) +{ + if (PS_DATA_IS_PRIMITIVE(item->type)) { + return 1; + } + switch (item->type) { + case PS_DATA_STRING: + return strlen(item->data.V); + case PS_DATA_VECTOR: { + psVector *vector = item->data.V; + return vector->n; + } + default: + psAbort("Shouldn't ever get here."); + } + return 0; +} + +// Get the TFORM character, given a PS type +static inline char getTForm(psDataType type) +{ + switch (type) { + case PS_TYPE_U8: + case PS_TYPE_S8: + return 'B'; + case PS_TYPE_S16: + return 'I'; + case PS_TYPE_S32: + return 'J'; + case PS_TYPE_U64: + case PS_TYPE_S64: + return 'K'; + case PS_TYPE_U16: + return 'U'; + case PS_TYPE_U32: + return 'V'; + case PS_TYPE_F32: + return 'E'; + case PS_TYPE_F64: + return 'D'; + case PS_TYPE_C32: + return 'C'; + case PS_TYPE_C64: + return 'M'; + case PS_TYPE_BOOL: + return 'L'; + case PS_DATA_STRING: + return 'A'; + default: + psError(PS_ERR_UNKNOWN, true, "Unknown type: %x\n", type); + return '?'; + } +} + + +// Column specification +// Included here, because there's no need for the user to have access to it +typedef struct +{ + psDataType type; // psLib type (e.g., PS_DATA_STRING or PS_TYPE_F32) + size_t size; // Size (number of repeats) + psElemType vectorType; // psLib type of vectors +} +colSpec; + + +bool psFitsInsertTable(psFits* fits, + const psMetadata* header, + const psArray* table, + const char *extname, + bool after) +{ + int status = 0; + + PS_ASSERT_PTR_NON_NULL(fits, false); + PS_ASSERT_ARRAY_NON_NULL(table, false); + + long numRows = table->n; + if (numRows < 1) { + // no table data, what can I do? + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Can't create a table without any rows.")); + return false; + } + + // Find the unique items in the array of metadata 'rows', and their sizes + psMetadata *colSpecs = psMetadataAlloc(); // Column specifications + size_t rowSize = 0; // Size (in bytes) of each row + for (long i = 0; i < numRows; i++) { + psMetadata* row = table->data[i]; + if (!row) { + continue; + } + psMetadataIterator *rowIter = psMetadataIteratorAlloc(row, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *colItem; // Column item, from iteration + while ((colItem = psMetadataGetAndIncrement(rowIter))) { + if (!(PS_DATA_IS_PRIMITIVE(colItem->type) || colItem->type == PS_DATA_STRING || + colItem->type == PS_DATA_VECTOR)) { + // unsupported type -- treating as an error + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Unsupported data type (%d) for Metadata Item '%s' in row %ld.", + colItem->type, colItem->name, i); + psFree(rowIter); + psFree(colSpecs); + return false; + } + + size_t size = columnSize(colItem); // Size for this column + + // Check to see if we know about this one; or update the size if required + psMetadataItem *colSpecItem = psMetadataLookup(colSpecs, colItem->name); + if (!colSpecItem) { + // A new one! + colSpec *spec = psAlloc(sizeof(colSpec)); // Specification for this column + spec->type = colItem->type; + spec->size = size; + if (colItem->type == PS_DATA_VECTOR) { + psVector *vector = colItem->data.V; // The vector + spec->vectorType = vector->type.type; + } + psMetadataAddPtr(colSpecs, PS_LIST_TAIL, colItem->name, PS_DATA_UNKNOWN, "", spec); + psFree(spec); // Drop reference + rowSize += PSELEMTYPE_SIZEOF(spec->type); + } else { + colSpec *spec = colSpecItem->data.V; // The specification + if (size > spec->size) { + spec->size = size; + } + if (colItem->type != spec->type) { + psLogMsg(__func__, PS_LOG_WARN, "Differing type found for column %s: %x vs %x --- " + "using the first found.\n", colSpecItem->name, colItem->type, spec->type); + } + if (colItem->type == PS_DATA_VECTOR) { + psVector *vector = colItem->data.V; // The vector + if (vector->type.type != spec->vectorType) { + psLogMsg(__func__, PS_LOG_WARN, "Differing vector type found for column %s: %x vs %x" + "--- using the first found.\n", colSpecItem->name, vector->type.type, + spec->vectorType); + } + } + } + } + psFree(rowIter); + } + + long numColumns = colSpecs->list->n;// Number of columns + if (numColumns == 0) { + // No table columns found + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Did not find any column data to write to a table."); + psFree(colSpecs); + return false; + } + + // Create array of column names and types. + psArray *columnNames = psArrayAlloc(numColumns); // Array of column names, for cfitsio + psArray *columnTypes = psArrayAlloc(numColumns); // Array of column types, for cfitsio + psMetadataIterator *colSpecsIter = psMetadataIteratorAlloc(colSpecs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *colSpecItem; // Column specification item, from iteration + for (long i = 0; (colSpecItem = psMetadataGetAndIncrement(colSpecsIter)); i++) { + colSpec *spec = colSpecItem->data.V; // The specification + columnNames->data[i] = psMemIncrRefCounter(colSpecItem->name); + psString colType = NULL; // The column type + if (spec->type == PS_DATA_VECTOR) { + psStringAppend(&colType, "%zd%c", spec->size, getTForm(spec->vectorType)); + } else { + psStringAppend(&colType, "%zd%c", spec->size, getTForm(spec->type)); + } + columnTypes->data[i] = colType; + } + + // Create the table HDU + int numHDUs = psFitsGetSize(fits); // Number of HDUs in file + if (numHDUs == 0) { + // We're creating the first extension + fits_create_tbl(fits->fd, + BINARY_TBL, + table->n, // number of rows in table + numColumns, // number of columns in table + (char**)columnNames->data, // names of the columns + (char**)columnTypes->data, // format of the columns + NULL, // physical unit of columns + (char*)extname, // extension name; casting away const because cfitsio is horrible + &status); + } else { + if (!after) { + if (psFitsGetExtNum(fits) == 0) { + // We're creating a replacement primary HDU. + // Set status to signal fits_insert_img to insert a new primary HDU + status = PREPEND_PRIMARY; + } else { + // Move back one to perform an insert after the previous HDU + psFitsMoveExtNum(fits, -1, true); + } + } + // Insert the table + fits_insert_btbl(fits->fd, + table->n, // number of rows in table + numColumns, // number of columns in table + (char**)columnNames->data, // names of the columns + (char**)columnTypes->data, // format of the columns + NULL, // physical unit of columns + (char*)extname, // extension name; casting away const because cfitsio is horrible + 0, &status); + } + psFree(columnNames); + psFree(columnTypes); + + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, "Unable to create FITS table with %ld columns and %ld rows: %s", + numColumns, table->n, fitsErr); + psFree(colSpecsIter); + psFree(colSpecs); + return false; + } + + // Write header + if (header && !psFitsWriteHeader(fits, header)) { + psError(PS_ERR_IO, false, "Unable to write FITS header.\n"); + psFree(colSpecsIter); + psFree(colSpecs); + return false; + } + + + // cfitsio requires that we write the data by columns --- urgh! + psMetadataIteratorSet(colSpecsIter, PS_LIST_HEAD); + for (long colNum = 1; (colSpecItem = psMetadataGetAndIncrement(colSpecsIter)); colNum++) { + // Note: colNum is unit-indexed, because it's for cfitsio + colSpec *spec = colSpecItem->data.V; // The specification + if (PS_DATA_IS_PRIMITIVE(spec->type)) { + size_t dataSize = PSELEMTYPE_SIZEOF(spec->type); // Size (in bytes) of this type + psVector *columnData = psVectorAlloc(table->n, spec->type); // The raw row data, to be written + psVectorInit(columnData, 0); + for (long i = 0; i < table->n; i++) { + psMetadata *row = table->data[i]; // The row of interest + psMetadataItem *dataItem = psMetadataLookup(row, colSpecItem->name); // The value of interest + memcpy(&columnData->data.U8[i * dataSize], &dataItem->data, dataSize); + } + + int fitsDataType; // Data type for cfitsio + p_psFitsTypeToCfitsio(spec->type, NULL, NULL, &fitsDataType); + fits_write_col(fits->fd, + fitsDataType, + colNum, // column number + 1, // first row + 1, // first element + table->n, // number of rows + columnData->data.U8, // the data + &status); + psFree(columnData); + } else { + switch (spec->type) { + case PS_DATA_STRING: { + psArray *strings = psArrayAlloc(table->n); // Array of strings + for (long i = 0; i < table->n; i++) { + psMetadata *row = table->data[i]; // The row of interest + strings->data[i] = psMemIncrRefCounter(psMetadataLookupStr(NULL, row, + colSpecItem->name)); + } + fits_write_col_str(fits->fd, colNum, 1, 1, table->n, (char**)strings->data, &status); + psFree(strings); + break; + } + case PS_DATA_VECTOR: { + size_t dataSize = PSELEMTYPE_SIZEOF(spec->vectorType); // Size of data, in bytes + psVector *columnData = psVectorAlloc(spec->size * table->n * dataSize, PS_TYPE_U8); + psVectorInit(columnData, 0); + for (long i = 0; i < table->n; i++) { + psMetadata *row = table->data[i]; // The row of interest + psMetadataItem* dataItem = psMetadataLookup(row, colSpecItem->name); + if (dataItem->type != PS_DATA_VECTOR) { + // Just in case --- get a zero instead of some weird result + continue; + } + psVector *vector = dataItem->data.V; + memcpy(&columnData->data.U8[i * dataSize * spec->size], vector->data.U8, + vector->n * dataSize); + } + + int fitsDataType; // Data type for cfitsio + p_psFitsTypeToCfitsio(spec->vectorType, NULL, NULL, &fitsDataType); + fits_write_col(fits->fd, fitsDataType, colNum, 1, 1, table->n * spec->size, + columnData->data.U8, &status); + psFree(columnData); + break; + } + default: + psAbort("Should never get here.\n"); + } + } + + // Check error status from writing column + if (status != 0) { + char fitsErr[MAX_STRING_LENGTH]; + fits_get_errstatus(status, fitsErr); + psError(PS_ERR_LOCATION_INVALID, true, "Unable to write column %ld of FITS table: %s", + colNum, fitsErr); + psFree(colSpecsIter); + psFree(colSpecs); + return false; + } + } + + psFree(colSpecsIter); + psFree(colSpecs); + + return true; +} + +bool psFitsUpdateTable(psFits* fits, + const psMetadata* data, + int row) +{ + int status = 0; + + if (fits == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psFits object can not NULL.")); + return false; + } + + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psImage was NULL. Need a non-NULL psImage for operation to be performed.")); + return false; + } + + // check to see if we even are positioned on a table HDU + int hdutype; + if ( fits_get_hdu_type(fits->fd,&hdutype, &status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not determine the HDU type. CFITSIO Error: %s"), + fitsErr); + return false; + } + if (hdutype != ASCII_TBL && hdutype != BINARY_TBL) { + psError(PS_ERR_IO, true, + _("Current FITS HDU type must be a table.")); + return false; + } + + psMetadataIterator* iter = psMetadataIteratorAlloc((psPtr)data,PS_LIST_HEAD,NULL); + + psMetadataItem* item; + + while ( (item=psMetadataGetAndIncrement(iter)) != NULL) { + if (PS_DATA_IS_PRIMITIVE(item->type) || + item->type == PS_DATA_BOOL || + item->type == PS_DATA_STRING) { + // operating on primitive data type or string, i.e., not a complex object + int colnum = 0; + + if ( fits_get_colnum(fits->fd, CASESEN, item->name, &colnum, &status) == 0) { + // cooresponding column found in table + int dataType; + p_psFitsTypeToCfitsio(item->type, NULL, NULL, &dataType); + + if (fits_write_col(fits->fd, dataType, colnum, row+1, 1, 1, &item->data,&status) != 0) { + char fitsErr[MAX_STRING_LENGTH]; + (void)fits_get_errstatus(status, fitsErr); + psError(PS_ERR_IO, true, + _("Could not write data to file. CFITSIO Error: %s"), + fitsErr); + psFree(iter); + return false; + } + } else { + // the column was not found. + psWarning("No column with the name '%s' exists in the table.", + item->name); + } + } + } + + psFree(iter); + + return true; +} Index: /branches/rel-1-1/psLib/src/fits/psFitsTable.h =================================================================== --- /branches/rel-1-1/psLib/src/fits/psFitsTable.h (revision 12167) +++ /branches/rel-1-1/psLib/src/fits/psFitsTable.h (revision 12167) @@ -0,0 +1,116 @@ +/* @file psFitsTable.h + * @brief Contains Fits I/O routines + * + * @author EAM, PAP, JH + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_FITSTABLE_H +#define PS_FITSTABLE_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include "psFits.h" + +#include "psType.h" +#include "psArray.h" +#include "psVector.h" +#include "psMetadata.h" +#include "psImage.h" + +/** Reads a table row. The current HDU type must be either + * PS_FITS_TYPE_BINARY_TABLE or PS_FITS_TYPE_ASCII_TABLE. + * + * @return psMetadata* The table row's data. The keys are the column names. + */ +psMetadata* psFitsReadTableRow( + const psFits* fits, ///< the psFits object + int row ///< row number to read +); + +/** Reads a table column. The current HDU type must be either + * PS_FITS_TYPE_BINARY_TABLE or PS_FITS_TYPE_ASCII_TABLE. + * + * @return psArray* Array of data items for the specified column or NULL + * if an error occurred. + */ +psArray* psFitsReadTableColumn( + const psFits* fits, ///< the psFits object + const char* colname ///< the column name +); + +/** Reads a table column of numbers. The current HDU type must be either + * PS_FITS_TYPE_BINARY_TABLE or PS_FITS_TYPE_ASCII_TABLE. + * + * @return psVector* Vector of data for the specified column or NULL + * if an error occurred. + */ +psVector* psFitsReadTableColumnNum( + const psFits* fits, ///< the psFits object + const char* colname ///< the column name +); + + +/** Reads a whole FITS table. The current HDU type must be either + * PS_FITS_TYPE_BINARY_TABLE or PS_FITS_TYPE_ASCII_TABLE. + * + * @return psArray* Array of psMetadata items, which contains the output + * data items of each row. + * + * @see psFitsReadTableRow + */ +psArray* psFitsReadTable( + const psFits* fits ///< the psFits object +); + +/** Writes a whole FITS table. A new HDU of the type BINTABLE is appended + * to the file. + * + * @return bool TRUE if the write was successful, otherwise FALSE + * + * @see psFitsReadTable + * @see psFitsInsertTable + */ +bool psFitsWriteTable( + psFits* fits, ///< the psFits object + const psMetadata* header, ///< header items for the new HDU. Can be NULL. + const psArray* table, ///< Array of psMetadata items, which contains the output data items of each row. + const char *extname ///< Extension name +); + +/** Inserts a whole FITS table. A new HDU of the type BINTABLE is inserted either + * before or after, depending on the AFTER parameter, the current HDU. + * + * @return bool TRUE if the insert/write was successful, otherwise FALSE + * + * @see psFitsWriteTable + */ +bool psFitsInsertTable( + psFits* fits, ///< the psFits object + const psMetadata* header, ///< header items for the new HDU. Can be NULL. + const psArray* table, ///< Array of psMetadata items, which contains the output data items of each row. + const char *extname, ///< Extension name + bool after ///< TRUE if insert is done after CHDU, otherwise table is inserted before CHDU +); + +/** Updates a FITS table. The current HDU type must be either + * PS_FITS_TYPE_BINARY_TABLE or PS_FITS_TYPE_ASCII_TABLE. + * + * @return bool TRUE if the write was successful, otherwise FALSE + * + * @see psFitsWriteTable + */ +bool psFitsUpdateTable( + psFits* fits, ///< the psFits object + const psMetadata* data, + ///< Array of psMetadata items, which contains the output data items of each row. + int row ///< the row number to update. +); + +/// @} +#endif // #ifndef PS_FITS_H Index: /branches/rel-1-1/psLib/src/imageops/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/imageops/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/imageops/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/imageops/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/Makefile.am (revision 12167) @@ -0,0 +1,30 @@ +#Makefile for image operation functions of psLib +# +noinst_LTLIBRARIES = libpslibimageops.la + +libpslibimageops_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(GSL_CFLAGS) +libpslibimageops_la_SOURCES = \ + psImageBackground.c \ + psImageConvolve.c \ + psImageGeomManip.c \ + psImagePixelExtract.c \ + psImagePixelManip.c \ + psImageStats.c \ + psImageStructManip.c \ + psImageMaskOps.c \ + psImageUnbin.c + +EXTRA_DIST = imageops.i + +pkginclude_HEADERS = \ + psImageBackground.h \ + psImageConvolve.h \ + psImageGeomManip.h \ + psImagePixelExtract.h \ + psImagePixelManip.h \ + psImageStats.h \ + psImageStructManip.h \ + psImageMaskOps.h \ + psImageUnbin.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/imageops/imageops.i =================================================================== --- /branches/rel-1-1/psLib/src/imageops/imageops.i (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/imageops.i (revision 12167) @@ -0,0 +1,8 @@ +/* imageops headers */ +%include "psImageConvolve.h" +%include "psImageGeomManip.h" +%include "psImagePixelExtract.h" +%include "psImagePixelManip.h" +%include "psImageStats.h" +%include "psImageStructManip.h" + Index: /branches/rel-1-1/psLib/src/imageops/psImageBackground.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageBackground.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageBackground.c (revision 12167) @@ -0,0 +1,123 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psMemory.h" +#include "psTrace.h" +#include "psImage.h" +#include "psVector.h" +#include "psStats.h" +#include "psType.h" +#include "psAssert.h" +#include "psRandom.h" +#include "psError.h" + +// XXX allow the user to choose the stats method? +// (SAMPLE_MEAN, CLIPPED_MEAN, ROBUST_MEDIAN, FITTED_MEAN) +bool psImageBackground(psStats *stats, const psImage *image, const psImage *mask, psMaskType maskValue, psRandom *rng) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + if (mask) { + PS_ASSERT_IMAGE_NON_NULL(mask, NULL); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(mask, image, NULL); + } + if (stats->options & PS_STAT_ROBUST_QUARTILE) { + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(stats->min, 0.0, NULL); + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(stats->max, 0.0, NULL); + PS_ASSERT_FLOAT_LESS_THAN_OR_EQUAL(stats->min, 1.0, NULL); + PS_ASSERT_FLOAT_LESS_THAN_OR_EQUAL(stats->max, 1.0, NULL); + } + PS_ASSERT_INT_NONNEGATIVE(stats->nSubsample, NULL); + PS_ASSERT_PTR_NON_NULL(rng, NULL); + + // Size of image + long nx = image->numCols; + long ny = image->numRows; + + const int Npixels = nx*ny; // Total number of pixels + const int Nsubset = (stats->nSubsample == 0) ? Npixels : PS_MIN(stats->nSubsample, Npixels); // Number of pixels in subset + + psVector *values = psVectorAllocEmpty(Nsubset, PS_TYPE_F32); // Vector containing subsample + + // Minimum and maximum values + float min = values->data.F32[0]; + float max = values->data.F32[0]; + + // select a subset of the image pixels to measure the stats + long n = 0; // Number of actual pixels in subset + for (long i = 0; i < Nsubset; i++) { + double frnd = psRandomUniform(rng); + int pixel = Npixels * frnd; + int ix = pixel % nx; + int iy = pixel / nx; + + if (!isfinite(image->data.F32[iy][ix]) || (mask && mask->data.U8[iy][ix] & maskValue)) { + continue; + } + + float value = image->data.F32[iy][ix]; + min = PS_MIN(value, min); + max = PS_MIN(value, max); + values->data.F32[n] = value; + n++; + } + values->n = n; + + if (stats->options & PS_STAT_ROBUST_QUARTILE) { + // use simple stats code (old verions) + // XXX this hack is just for testing, drop when I am happy with the psStats version of the values + + int imin = stats->min * n; + int imax = stats->max * n; + int npts = imax - imin + 1; + + if (!psVectorSort(values, values)) { + psError(PS_ERR_UNKNOWN, false, "Unable to sort values.\n"); + psFree(values); + return false; + } + + // Subtract the median when we add the numbers, so we don't get numerical problems + float median = npts % 2 ? 0.5 * (values->data.F32[npts/2 - 1] + values->data.F32[npts/2]) : + values->data.F32[npts/2]; + double value = 0; + for (long i = imin; (i <= imax) && (i < n); i++) { + value += values->data.F32[i] - median; + } + value = value / npts + median; + stats->robustMedian = value; + stats->robustUQ = values->data.F32[imax]; + stats->robustLQ = values->data.F32[imin]; + } else { + // XXX leave this as a psphot user option (passed in as part of stats?) + if ((stats->options & PS_STAT_FITTED_MEAN) || (stats->options & PS_STAT_FITTED_MEAN_V2)) { + stats->clipSigma = 1.0; + } + if (!psVectorStats (stats, values, NULL, NULL, 0)) { + if (psTraceGetLevel("psLib.imageops") >= 5) { + FILE *f = fopen ("vector.dat", "w"); + int fd = fileno(f); + p_psVectorPrint (fd, values, "values"); + fclose (f); + } + psError(PS_ERR_UNKNOWN, false, "Unable to measure statistics for image background " + "(%dx%d, (row0,col0) = (%d,%d)", + image->numRows, image->numCols, image->row0, image->col0); + psFree(values); + return false; + } + if (psTraceGetLevel("psLib.imageops") >= 6) { + FILE *f = fopen ("vector.dat", "w"); + int fd = fileno(f); + p_psVectorPrint (fd, values, "values"); + fclose (f); + } + } + + psFree(values); + return true; +} Index: /branches/rel-1-1/psLib/src/imageops/psImageBackground.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageBackground.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageBackground.h (revision 12167) @@ -0,0 +1,31 @@ +/** @file psImageUnbin.h + * + * @brief Functions to determine the image background + * + * @author EAM, IfA + * + * $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 IfA, University of Hawaii + */ + +#ifndef PS_IMAGE_BACKGROUND_H +#define PS_IMAGE_BACKGROUND_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psStats.h" +#include "psImage.h" +#include "psType.h" + +// Get the background for an image +bool psImageBackground(psStats *stats, // desired measurement and options + const psImage *image, // Image for which to get the background + const psImage *mask, // Mask image + psMaskType maskValue, // Mask pixels which this mask value + psRandom *rng // Random number generator (for pixel selection) + ); + +/// @} +#endif // #ifndef PS_IMAGE_BACKGROUND_H Index: /branches/rel-1-1/psLib/src/imageops/psImageConvolve.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageConvolve.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageConvolve.c (revision 12167) @@ -0,0 +1,657 @@ +/// @file psImageConvolve.c +/// +/// @brief Contains FFT transform related functions for psImage. +/// +/// @author Robert DeSonia, MHPCC +/// @author Paul Price, IfA +/// @author Eugene Magnier, IfA +/// +/// @version $Revision: 1.47 $ $Name: not supported by cvs2svn $ +/// @date $Date: 2007-02-22 22:37:59 $ +/// +/// Copyright 2004-2007 Institute for Astronomy, University of Hawaii +/// + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#include +#include +#include "psAbort.h" +#include "psMemory.h" +#include "psLogMsg.h" +#include "psError.h" +#include "psAssert.h" +#include "psScalar.h" +#include "psBinaryOp.h" +#include "psImageFFT.h" +#include "psImageStructManip.h" +#include "psImagePixelManip.h" +#include "psTrace.h" + +#include "psImageConvolve.h" + +static void kernelFree(psKernel *kernel) +{ + if (kernel) { + psFree(kernel->image); + psFree(kernel->p_kernelRows); + } + return; +} + +psKernel *psKernelAlloc(int xMin, int xMax, int yMin, int yMax) +{ + // Check the inputs to make sure max > min; if not, switch. + if (yMin > yMax) { + psLogMsg(__func__, PS_LOG_WARN, + "Specified yMin, %d, was greater than yMax, %d. Values swapped.", + yMin, yMax); + + int temp = yMin; + yMin = yMax; + yMax = temp; + } + + // following is explicitly spelled out in the SDRS as a requirement + if (xMin > xMax) { + psLogMsg(__func__, PS_LOG_WARN, + "Specified xMin, %d, was greater than xMax, %d. Values swapped.", + xMin, xMax); + + int temp = xMin; + xMin = xMax; + xMax = temp; + } + + int numRows = yMax - yMin + 1; // Number of rows for kernel image + int numCols = xMax - xMin + 1; // Number of columns for kernel image + + psKernel *kernel = psAlloc(sizeof(psKernel)); // The kernel, to be returned + psMemSetDeallocator(kernel,(psFreeFunc)kernelFree); + + kernel->xMin = xMin; + kernel->xMax = xMax; + kernel->yMin = yMin; + kernel->yMax = yMax; + kernel->image = psImageAlloc(numCols, numRows, PS_TYPE_KERNEL); + psImageInit(kernel->image, 0.0); + + // Set up indirections, so we can refer to kernel->kernel[-1][-3] for the (-1,-1) element, instead of + // kernel->image[kernel->yMax - kernel->yMin + 1][kernel->yMax - kernel->yMin + 3] (yuk!). + kernel->p_kernelRows = psAlloc(sizeof(float*)*numRows); + for (int i = 0; i < numRows; i++) { + kernel->p_kernelRows[i] = kernel->image->data.PS_TYPE_KERNEL_DATA[i] - xMin; + } + kernel->kernel = kernel->p_kernelRows - yMin; + + return kernel; +} + + + +bool psMemCheckKernel(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)kernelFree ); +} + + +psKernel *psKernelGenerate(const psVector *tShifts, + const psVector *xShifts, + const psVector *yShifts, + bool tRelative, + bool xyRelative) +{ + PS_ASSERT_VECTOR_NON_NULL(tShifts, NULL); + PS_ASSERT_VECTOR_NON_NULL(xShifts, NULL); + PS_ASSERT_VECTOR_NON_NULL(yShifts, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(tShifts, xShifts, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(tShifts, yShifts, NULL); + PS_ASSERT_VECTOR_TYPE(tShifts, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(xShifts, PS_TYPE_S32, NULL); + PS_ASSERT_VECTOR_TYPE(yShifts, PS_TYPE_S32, NULL); + + // If there are no shifts, the kernel is just a 1 at 0,0 + long num = tShifts->n; // Number of shifts + if (num == 0) { + psKernel *kernel = psKernelAlloc(0,0,0,0); + kernel->kernel[0][0] = 1; + return kernel; + } + + // Get dimensions and scaling + int xMin, xMax, yMin, yMax; // Range of values for kernel + int xLast, yLast; // Last location, for relative shifts + float tSum = tShifts->data.F32[0]; // Sum of the times + xLast = xMin = xMax = xShifts->data.S32[0]; + yLast = yMin = yMax = yShifts->data.S32[0]; + int x0, y0; // Final location; everything is relative to this + x0 = xShifts->data.S32[num - 1]; + y0 = yShifts->data.S32[num - 1]; + for (long i = 1; i < num; i++) { + int x = xShifts->data.S32[i] - x0; // x position in kernel + int y = yShifts->data.S32[i] - y0; // y position in kernel + if (xyRelative) { + x += xLast; + y += yLast; + xLast = x; + yLast = y; + } + if (x < xMin) { + xMin = x; + } + if (x > xMax) { + xMax = x; + } + if (y < yMin) { + yMin = y; + } + if (y > yMax) { + yMax = y; + } + + if (tRelative) { + tSum += tShifts->data.F32[i]; + } + } + + psTrace("psLib.imageops", 5, "Kernel range: %d:%d,%d:%d\n", xMin, xMax, yMin, yMax); + + if (!tRelative) { + // Then the total time is simply the final value + // NB: We assume the counter starts at zero! + tSum = tShifts->data.F32[tShifts->n - 1]; + } + + // One more pass through to set the kernel + psKernel *kernel = psKernelAlloc(xMin, xMax, yMin, yMax); // The kernel + xLast = xShifts->data.S32[0]; + yLast = yShifts->data.S32[0]; + float tLast = 0.0; // Last value for t + for (int i = 0; i < num; i++) { + int x = xShifts->data.S32[i] - x0; // x position in kernel + int y = yShifts->data.S32[i] - y0; // y position in kernel + if (xyRelative) { + x += xLast; + y += yLast; + xLast = x; + yLast = y; + } + float t = tShifts->data.F32[i]; + if (!tRelative) { + t -= tLast; + tLast = tShifts->data.F32[i]; + } + + kernel->kernel[y][x] += t; + } + + // Normalise the kernel by the total time (kernel sum should be unity) + psBinaryOp(kernel->image, kernel->image, "*", psScalarAlloc(1.0 / tSum, PS_TYPE_F32)); + + return kernel; +} + +psImage *psImageConvolveDirect(psImage *out, + const psImage *in, + const psKernel *kernel) +{ + PS_ASSERT_IMAGE_NON_NULL(in, NULL); + PS_ASSERT_IMAGE_TYPE_F32_OR_F64(in, NULL); + PS_ASSERT_PTR_NON_NULL(kernel, NULL); + PS_ASSERT_PTR_NON_NULL(kernel->kernel, NULL); + + // Pull out kernel parameters, for convenience + int xMin = kernel->xMin; + int xMax = kernel->xMax; + int yMin = kernel->yMin; + int yMax = kernel->yMax; + float **kernelData = kernel->kernel; + + int numRows = in->numRows; // Number of rows + int numCols = in->numCols; // Number of columns + +#define SPATIAL_CONVOLVE_CASE(TYPE) \ + case PS_TYPE_##TYPE: { \ + ps##TYPE **inData = in->data.TYPE; \ + out = psImageRecycle(out, numCols, numRows, PS_TYPE_##TYPE); \ + for (int row = 0; row < numRows; row++) { \ + ps##TYPE *outRow = out->data.TYPE[row]; \ + for (int col = 0; col < numCols; col++) { \ + ps##TYPE pixel = 0.0; \ + for (int kRow = PS_MAX(yMin, -row); kRow <= PS_MIN(yMax, numRows - row - 1); kRow++) { \ + for (int kCol = PS_MAX(xMin, -col); kCol <= PS_MIN(xMax, numCols - col - 1); kCol++) { \ + pixel += kernelData[kRow][kCol] * inData[row + kRow][col + kCol]; \ + } \ + } \ + outRow[col] = pixel; \ + } \ + } \ + } \ + break; + + switch (in->type.type) { + SPATIAL_CONVOLVE_CASE(F32); + SPATIAL_CONVOLVE_CASE(F64); + default: + psAbort("Should never get here: bad type that was asserted on previously."); + } + + return out; +} + +psImage *psImageConvolveFFT(psImage *out, + const psImage *in, + const psKernel *kernel, + float pad) +{ + PS_ASSERT_IMAGE_NON_NULL(in, NULL); + PS_ASSERT_IMAGE_TYPE(in, PS_TYPE_F32, NULL); + PS_ASSERT_PTR_NON_NULL(kernel, NULL); + PS_ASSERT_IMAGE_NON_NULL(kernel->image, NULL); + + // Pull out kernel parameters, for convenience + int xMin = kernel->xMin; + int xMax = kernel->xMax; + int yMin = kernel->yMin; + int yMax = kernel->yMax; + + int numRows = in->numRows; // Number of rows in input image + int numCols = in->numCols; // Number of columns in input image + + // Need to pad the input image to protect from wrap-around effects + if (xMax - xMin > numCols || yMax - yMin > numRows) { + // Cannot pad the image if the kernel is larger. + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Kernel cannot extend further than input image size (%dx%d vs %dx%d)."), + xMax, yMax, numCols, numRows); + return NULL; + } + int paddedCols = numCols + PS_MAX(-xMin, xMax); // Number of columns in padded image + int paddedRows = numRows + PS_MAX(-yMin, yMax); // Number of rows in padded image + + // Generate padded image + psImage *paddedImage = psImageAlloc(paddedCols,paddedRows,in->type.type); // Padded input image + psImageOverlaySection(paddedImage, in, 0, 0, "="); + for (int y = 0; y < numRows; y++) { + for (int x = numCols; x < paddedCols; x++) { + paddedImage->data.F32[y][x] = pad; + } + } + for (int y = numRows; y < paddedRows; y++) { + for (int x = 0; x < paddedCols; x++) { + paddedImage->data.F32[y][x] = pad; + } + } + + // Result of FFT + psImage *inRealFFT = NULL, *inImagFFT = NULL; + if (!psImageForwardFFT(&inRealFFT, &inImagFFT, paddedImage)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to fourier transform input image.")); + psFree(paddedImage); + return NULL; + } + psFree(paddedImage); + + // Generate padded kernel image + psImage *paddedKernel = psImageAlloc(paddedCols, paddedRows, PS_TYPE_F32); + psImageInit(paddedKernel, 0.0); + for (int y = PS_MIN(-1, yMin); y <= PS_MIN(-1, yMax); y++) { + // y is negative + for (int x = PS_MIN(-1, xMin); x <= PS_MIN(-1, xMax); x++) { + // x is negative + paddedKernel->data.F32[paddedRows + y][paddedCols + x] = kernel->kernel[y][x]; + } + for (int x = PS_MAX(0, xMin); x <= PS_MAX(0, xMax); x++) { + // x is positive + paddedKernel->data.F32[paddedRows + y][x] = kernel->kernel[y][x]; + } + } + for (int y = PS_MAX(0, yMin); y <= PS_MAX(0, yMax); y++) { + // y is positive + for (int x = PS_MIN(-1, xMin); x <= PS_MIN(-1, xMax); x++) { + // x is negative + paddedKernel->data.F32[y][paddedCols + x] = kernel->kernel[y][x]; + } + for (int x = PS_MAX(0, xMin); x <= PS_MAX(0, xMax); x++) { + // x is positive + paddedKernel->data.F32[y][x] = kernel->kernel[y][x]; + } + } + + psImage *kernelRealFFT = NULL, *kernelImagFFT = NULL; + if (!psImageForwardFFT(&kernelRealFFT, &kernelImagFFT, paddedKernel)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to fourier transform kernel.")); + psFree(inRealFFT); + psFree(inImagFFT); + psFree(paddedKernel); + return NULL; + } + psFree(paddedKernel); + + // Convolution in fourier domain is just a pixel-wise multiplication + if (!psImageComplexMultiply(&inRealFFT, &inImagFFT, inRealFFT, inImagFFT, kernelRealFFT, kernelImagFFT)) { + psError(PS_ERR_UNKNOWN, false, _("Unable to multiply fourier transformts.")); + psFree(inRealFFT); + psFree(inImagFFT); + psFree(kernelRealFFT); + psFree(kernelImagFFT); + return NULL; + } + psFree(kernelRealFFT); + psFree(kernelImagFFT); + + psImage *paddedConvolved = NULL; // Padded convolved image + if (!psImageBackwardFFT(&paddedConvolved, inRealFFT, inImagFFT, paddedCols)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to invert fourier transform of convolution image.")); + psFree(inRealFFT); + psFree(inImagFFT); + return NULL; + } + psFree(inRealFFT); + psFree(inImagFFT); + + // Trim off the padding, then renormalise (which also does a copy, so there's no parent for the output) + psImage *convolved = psImageSubset(paddedConvolved, psRegionSet(0, numCols, 0, numRows)); + out = (psImage*)psBinaryOp(out, convolved, "*", + psScalarAlloc(1.0 / paddedCols / paddedRows, PS_TYPE_F32)); + psFree(convolved); + psFree(paddedConvolved); + + return out; +} + +bool psImageSmooth (psImage *image, + double sigma, + double Nsigma) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + + // relevant terms + int Nrange = sigma*Nsigma + 0.5; // Number of pixels either side for convolution kernel + int Npixel = 2*Nrange + 1; // Total number of pixels in convolution kernel + int Nx = image->numCols; // Number of columns + int Ny = image->numRows; // Number of rows + + #define IMAGESMOOTH_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + /* generate normalized gaussian */ \ + psVector *gaussnorm = psVectorAlloc(Npixel, PS_TYPE_##TYPE); \ + { \ + double sum = 0.0; \ + double factor = -0.5/(sigma*sigma); \ + for (int i = -Nrange; i < Nrange + 1; i++) { \ + gaussnorm->data.TYPE[i+Nrange] = exp(factor*i*i); \ + sum += gaussnorm->data.TYPE[i+Nrange]; \ + } \ + for (int i = -Nrange; i < Nrange + 1; i++) { \ + gaussnorm->data.TYPE[i+Nrange] /= sum; \ + } \ + } \ + ps##TYPE *gauss = &gaussnorm->data.TYPE[Nrange]; \ + \ + /* Smooth in X direction */ \ + { \ + psVector *calculation = psVectorAlloc(Nx, PS_TYPE_##TYPE); \ + for (int j = 0; j < Ny; j++) { \ + ps##TYPE *vi = image->data.TYPE[j]; \ + ps##TYPE *vo = calculation->data.TYPE; \ + int xMax = PS_MIN(Nrange, Nx); \ + int convRange = PS_MIN(Nrange + 1, Nx); \ + /* Smooth first Nrange pixels, with renorm */ \ + for (int i = 0; i < xMax; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - i; \ + ps##TYPE *vg = gauss - i; \ + double g = 0.0; \ + double s = 0.0; \ + for (int n = -i; n < convRange; n++, vr++, vg++) { \ + s += *vg * *vr; \ + g += *vg; \ + } \ + *vo = s / g; \ + } \ + /* If that's all the pixels we have, then we're done already */ \ + if (Nx > Nrange) { \ + /* Smooth middle pixels */ \ + for (int i = Nrange; i < Nx - Nrange; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - Nrange; \ + ps##TYPE *vg = gauss - Nrange; \ + double s = 0; \ + for (int n = -Nrange; n < Nrange + 1; n++, vr++, vg++) { \ + s += *vg * *vr; \ + } \ + *vo = s; \ + } \ + /* Smooth last Nrange pixels, with renorm */ \ + /* XXX does this miss the last column? */ \ + for (int i = Nx - Nrange; i < Nx; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - Nrange; \ + ps##TYPE *vg = gauss - Nrange; \ + double g = 0.0; \ + double s = 0.0; \ + for (int n = -Nrange; n < Nx - i; n++, vr++, vg++) { \ + s += *vg * *vr; \ + g += *vg; \ + } \ + *vo = s / g; \ + } \ + } \ + memcpy(image->data.TYPE[j], calculation->data.TYPE, Nx*sizeof(ps##TYPE)); \ + } \ + psFree(calculation); \ + } \ + \ + /* Smooth in Y direction */ \ + psArray *rows = psArrayAlloc(Nrange); \ + /* Smooth the first Nrange pixels, with renorm */ \ + int yMax = PS_MIN(Nrange, Ny); \ + int convRange = PS_MIN(Nrange + 1, Ny); \ + for (int j = 0; j < yMax; j++) { \ + psVector *calculation = psVectorAlloc(Nx, PS_TYPE_##TYPE); \ + /* Zero the output row */ \ + memset(calculation->data.TYPE, 0, Nx*sizeof(ps##TYPE)); \ + double sum = 0.0; \ + for (int n = -j; n < convRange; n++) { sum += gauss[n]; } \ + for (int n = -j; n < convRange; n++) { \ + ps##TYPE *vi = image->data.TYPE[j+n]; \ + ps##TYPE *vo = calculation->data.TYPE; \ + double g = gauss[n] / sum; \ + for (int i = 0; i < Nx; i++, vi++, vo++) { \ + *vo += *vi * g; \ + } \ + } \ + /* Save output rows on temp array of rows */ \ + rows->data[j] = calculation; \ + } \ + if (Ny < Nrange) { \ + /* Need to save the first bit, then we're done */ \ + for (int j = 0; j < Ny; j++) { \ + psVector *save = rows->data[j]; \ + memcpy(image->data.TYPE[j], save->data.TYPE, Nx*sizeof(ps##TYPE)); \ + } \ + } else { \ + /* Smooth middle pixels */ \ + psVector *calculation = psVectorAlloc(Nx, PS_TYPE_##TYPE); \ + for (int j = Nrange; j < Ny - Nrange; j++) { \ + memset(calculation->data.TYPE, 0, Nx*sizeof(ps##TYPE)); \ + for (int n = -Nrange; n < Nrange + 1; n++) { \ + ps##TYPE *vi = image->data.TYPE[j+n]; \ + ps##TYPE *vo = calculation->data.TYPE; \ + double g = gauss[n]; \ + for (int i = 0; i < Nx; i++, vi++, vo++) { \ + *vo += *vi * g; \ + } \ + } \ + /* Write the output row */ \ + int Nr = j % Nrange; \ + psVector *save = rows->data[Nr]; \ + memcpy(image->data.TYPE[j-Nrange], save->data.TYPE, Nx*sizeof(ps##TYPE)); \ + /* Juggle the pointers, so that next run we use the one we just wrote */ \ + rows->data[Nr] = calculation; \ + calculation = save; \ + } \ + /* Smooth last Nrange pixels, with renorm */ \ + for (int j = Ny - Nrange; j < Ny; j++) { \ + /* save the Nrange-offset output row, then zero */ \ + memset(calculation->data.TYPE, 0, Nx*sizeof(ps##TYPE)); \ + double sum = 0.0; \ + for (int n = -Nrange; n < Ny - j; n++) { sum += gauss[n]; } \ + for (int n = -Nrange; n < Ny - j; n++) { \ + ps##TYPE *vi = image->data.TYPE[j+n]; \ + ps##TYPE *vo = calculation->data.TYPE; \ + double g = gauss[n] / sum; \ + for (int i = 0; i < Nx; i++, vi++, vo++) { \ + *vo += *vi * g; \ + } \ + } \ + /* Write the output row */ \ + int Nr = j % Nrange; \ + psVector *save = rows->data[Nr]; \ + memcpy(image->data.TYPE[j-Nrange], save->data.TYPE, Nx*sizeof(ps##TYPE)); \ + /* Juggle the pointers, so that next run we use the one we just wrote */ \ + rows->data[Nr] = calculation; \ + calculation = save; \ + } \ + psFree(calculation); \ + /* Write the remaining rows */ \ + for (int j = Ny; j < Ny + Nrange; j++) { \ + int Nr = j % Nrange; \ + psVector *save = rows->data[Nr]; \ + memcpy(image->data.TYPE[j-Nrange], save->data.TYPE, Nx*sizeof(ps##TYPE)); \ + } \ + } \ + psFree(rows); \ + psFree(gaussnorm); \ + break; \ + } + + switch (image->type.type) { + IMAGESMOOTH_CASE(F32); + IMAGESMOOTH_CASE(F64); + default: { + char *typeStr; + PS_TYPE_NAME(typeStr,image->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + return false; + } + } + return true; +} + +bool psImageSmoothMaskF32 (psImage *image, + psImage *mask, + psMaskType maskVal, + double sigma, + double Nsigma) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + PS_ASSERT_IMAGE_NON_NULL(mask, NULL); + + // relevant terms + int Nrange = sigma*Nsigma + 0.5; // Number of pixels either side for convolution kernel + int Npixel = 2*Nrange + 1; // Total number of pixels in convolution kernel + int Nx = image->numCols; // Number of columns + int Ny = image->numRows; // Number of rows + + /* generate normalized gaussian */ + psVector *gaussnorm = psVectorAlloc(Npixel, PS_TYPE_F32); + { + double sum = 0.0; + double factor = -0.5/(sigma*sigma); + for (int i = -Nrange; i < Nrange + 1; i++) { + gaussnorm->data.F32[i+Nrange] = exp(factor*i*i); + sum += gaussnorm->data.F32[i+Nrange]; + } + for (int i = -Nrange; i < Nrange + 1; i++) { + gaussnorm->data.F32[i+Nrange] /= sum; + } + } + psF32 *gauss = &gaussnorm->data.F32[Nrange]; + + /** Smooth in X direction **/ + psVector *calculation = psVectorAlloc(Nx, PS_TYPE_F32); + for (int j = 0; j < Ny; j++) { + psU8 *vm = mask->data.U8[j]; + psF32 *vi = image->data.F32[j]; + psF32 *vo = calculation->data.F32; + // loop over all pixels in the row + for (int i = 0; i < Nx; i++, vi++, vo++, vm++) { + int offset = PS_MIN (i, Nrange); + psU8 *sm = vm - offset; + psF32 *si = vi - offset; + psF32 *sg = gauss - offset; + double g = 0.0; + double s = 0.0; + // loop over all valid pixels in the smoothing kernel + int xMin = PS_MAX (i - Nrange, 0); + int xMax = PS_MIN (i + Nrange + 1, Nx); + for (int n = xMin; n < xMax; n++, sm++, si++, sg++) { + if (*sm & maskVal) + continue; + s += *sg * *si; + g += *sg; + } + *vo = (g > 0) ? s / g : 0.0; + } + memcpy(image->data.F32[j], calculation->data.F32, Nx*sizeof(psF32)); + } + psFree(calculation); + + /** Smooth in Y direction **/ + // allocate and save Nrange extra row vectors for storage. these will be + // written over the output rows only after we are Nrange rows beyond them + int Nsave = Nrange + 1; + psArray *rows = psArrayAlloc(Nsave); + for (int i = 0; i < Nsave; i++) { + rows->data[i] = psVectorAlloc(Nx, PS_TYPE_F32); + } + + psVector *outsum = psVectorAlloc(Nx, PS_TYPE_F32); + for (int j = 0; j < Ny; j++) { + psVector *output = rows->data[j % Nsave]; + memset (output->data.F32, 0, Nx*sizeof(psF32)); + memset (outsum->data.F32, 0, Nx*sizeof(psF32)); + int yMin = PS_MAX (j - Nrange, 0); + int yMax = PS_MIN (j + Nrange + 1, Ny); + for (int n = yMin; n < yMax; n++) { + psU8 *vm = mask->data.U8[n]; + psF32 *vi = image->data.F32[n]; + psF32 *vo = output->data.F32; + psF32 *vs = outsum->data.F32; + double g = gauss[n - j]; + for (int i = 0; i < Nx; i++, vi++, vo++, vm++, vs++) { + if (*vm & maskVal) + continue; + *vo += *vi * g; + *vs += g; + } + } + // renormalize the row + psF32 *vo = output->data.F32; + psF32 *vs = outsum->data.F32; + for (int i = 0; i < Nx; i++, vo++, vs++) { + *vo = (*vs > 0) ? *vo / *vs : 0.0; + } + + // Write the output row + if (j - Nrange >= 0) { + int Nout = (j - Nrange) % Nsave; + psVector *save = rows->data[Nout]; + memcpy(image->data.F32[j-Nrange], save->data.F32, Nx*sizeof(psF32)); + } + } + + // Write the remaining output rows + for (int j = PS_MAX(0, Ny - Nrange); j < Ny; j++) { + psVector *save = rows->data[j % Nsave]; + memcpy(image->data.F32[j], save->data.F32, Nx*sizeof(psF32)); + } + psFree(rows); + psFree(outsum); + psFree(gaussnorm); + return true; +} Index: /branches/rel-1-1/psLib/src/imageops/psImageConvolve.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageConvolve.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageConvolve.h (revision 12167) @@ -0,0 +1,152 @@ +/* @file psImageConvolve.h + * + * @brief image convolution functionality + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.16 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 04:17:58 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_CONVOLVE_H +#define PS_IMAGE_CONVOLVE_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psVector.h" +#include "psType.h" + +#define PS_TYPE_KERNEL PS_TYPE_F32 ///< the data member to use for kernel image */ +#define PS_TYPE_KERNEL_DATA F32 ///< the data member to use for kernel image */ +#define PS_TYPE_KERNEL_NAME "psF32" ///< the data type for kernel as a string */ + +/// A convolution kernel +typedef struct +{ + psImage *image; ///< Kernel data, in the form of an image + int xMin; ///< Most negative x index + int yMin; ///< Most negative y index + int xMax; ///< Most positive x index + int yMax; ///< Most positive y index + float **kernel; ///< Pointer to the kernel data + float **p_kernelRows; ///< Pointer to the rows of the kernel data; not intended for user use. +} +psKernel; + +/// Allocates a convolution kernel of the given range +/// +/// In order to perform a convolution, we need to define the convolution +/// kernel. We need a more general object than a psImage so that we can +/// incorporate the offset from the (0, 0) pixel to the (0, 0) value of the +/// kernel. It might be convenient to allow both positive and negative +/// indices to convey the positive and negative shifts. One might consider +/// setting the x0 and y0 members of a psImage to the appropriate offsets, +/// but this is not the purpose of these members, and doing so may affect the +/// behavior of other psImage operations. +/// +/// This construction allows the kernel member to use negative indices, while +/// preserving the location of psMemBlocks relative to allocated memory. +/// +/// The maximum extent of the kernel shifts shall be defined by the xMin, +/// xMax, yMin and yMax members. Note that xMin and yMin, under normal +/// circumstances, should be negative numbers. That is, +/// myKernel->kernel[-3][-2] may be defined if yMin and xMin are equal to or +/// more negative than -3 and -2, respectively. +/// +/// In the event that one of the minimum values is greater than the +/// corresponding maximum value, the function shall generate a warning, and +/// the offending values shall be exchanged. +/// +/// @return psKernel* A new kernel object +/// +psKernel *psKernelAlloc( + int xMin, ///< Most negative x index + int xMax, ///< Most positive x index + int yMin, ///< Most negative y index + int yMax ///< Most positive y index +); + +/// Checks the type of a particular pointer. +/// +/// Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. +/// +/// @return bool: True if the pointer matches a psKernel structure, false otherwise. +/// +bool psMemCheckKernel( + psPtr ptr ///< the pointer whose type to check +); + + +/// Generates a kernel given a list of shift values +/// +/// Given a list of values (e.g., shifts made in the course of OT guiding), +/// psKernelGenerate shall return the appropriate kernel. The vectors xShifts +/// and yShifts, which are a list of shifts relative to some starting point, +/// will be supplied by the user. The elements of the vectors should be of an +/// integer type; otherwise the values shall be truncated to integers. The +/// output kernel shall be normalized such that the sum over the kernel is +/// unity. +/// +/// If the vectors are not of the same number of elements, then the function +/// shall generate a warning shall be generated, following which, the longer +/// vector trimmed to the length of the shorter, and the function shall continue. +/// +/// @return psKernel* new Kernel object +/// +psKernel *psKernelGenerate( + const psVector *tShifts, ///< list of time shifts (F32) + const psVector *xShifts, ///< list of x-axis shifts (S32) + const psVector *yShifts, ///< list of y-axis shifts (S32) + bool tRelative, ///< Are times relative (durations) or absolute? + bool xyRelative ///< Are x,y positions relative (shifts) or absolute? +); + +/// Convolve an image with a kernel, using a direct convolution +/// +/// This is appropriate for small kernels, where there is no time saving to use FFT method. +/// +/// @return psImage* resulting image +/// +psImage *psImageConvolveDirect( + psImage *out, ///< a psImage to recycle. If NULL, a new psImage is made. + const psImage *in, ///< the psImage to convolve + const psKernel *kernel ///< kernel to colvolve with +); + +/// Convolve an image with a kernel, using the FFT +/// +/// This is appropriate for larger kernels, where the direct convolution is slow. The input image and kernel +/// are suitably padded to avoid wrap-around effects. +psImage *psImageConvolveFFT( + psImage *out, ///< a psImage to recycle. If NULL, a new psImage is made. + const psImage *in, ///< the psImage to convolve + const psKernel *kernel, ///< kernel to colvolve with + float pad ///< Value to use to pad the input image +); + +/// Smooths an image by parts using 1D Gaussian independently in x and y. +/// +/// Applies a circularly symmetric Gaussian smoothing first in x and then in y +/// directions with just a vector. This process is 2N faster than 2D convolutions (in general). +/// +/// @return bool TRUE if successful, otherwise FALSE +/// +bool psImageSmooth( + psImage *image, ///< the image to be smoothed + double sigma, ///< the width of the smoothing kernel in pixels + double Nsigma ///< the size of the smoothing box in sigmas +); + +bool psImageSmoothMaskF32( + psImage *image, ///< the image to be smoothed + psImage *mask, ///< optional mask + psMaskType maskVal, + double sigma, ///< the width of the smoothing kernel in pixels + double Nsigma ///< the size of the smoothing box in sigmas +); + +/// @} +#endif // #ifndef PS_IMAGE_CONVOLVE_H Index: /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.c (revision 12167) @@ -0,0 +1,1062 @@ +/** @file psImageGeomManip.c + * + * @brief Contains basic image pixel and geometry manipulation operations, as + * specified in the PSLIB SDRS sections "Image Pixel Manipulations" and + * "Image Geometry Manipulations". + * + * @ingroup Image + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.35 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include // for isfinite(), etc. +#include +#include // for memcpy, etc. + +#include "psImageGeomManip.h" + +#include "psAbort.h" +#include "psError.h" +#include "psImage.h" +#include "psImageStructManip.h" +#include "psStats.h" +#include "psMemory.h" +#include "psAssert.h" + +#include "psCoord.h" + +psImage* psImageRebin(psImage* out, + const psImage* in, + const psImage* mask, + psMaskType maskVal, + int scale, + const psStats* stats) +{ + psS32 inRows; + psS32 inCols; + psS32 outRows; + psS32 outCols; + psVector* vec; // vector to hold the values of a single bin. + psVector* maskVec = NULL; // vector to hold the mask of a single bin. + psMaskType* maskData = NULL; + psStats* myStats; + + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + + if (scale < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified scale value, %d, must be a positive value."), + scale); + psFree(out); + return NULL; + } + + if (stats == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified statistic can not be NULL.")); + psFree(out); + return NULL; + } + + psStatsOptions statistic = psStatsSingleOption(stats->options); // Statistics option to use + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified statistic option, %d, is not valid. Must specify one and only one statistic type."), + stats->options); + psFree(out); + return NULL; + } + + vec = psVectorAllocEmpty(scale * scale, in->type.type); + + if (mask != NULL) { + if (mask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,mask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type, %s, is not the supported mask datatype of %s."), + typeStr, PS_TYPE_MASK_NAME); + psFree(out); + psFree(vec); + return NULL; + } + maskVec = psVectorAllocEmpty(scale * scale, PS_TYPE_MASK); + maskData = maskVec->data.PS_TYPE_MASK_DATA; + } + + myStats = psAlloc(sizeof(psStats)); + *myStats = *stats; + + // create output image. + inRows = in->numRows; + inCols = in->numCols; + outRows = (inRows + scale - 1) / scale; // round-up for remainders + outCols = (inCols + scale - 1) / scale; // round-up for remainders + out = psImageRecycle(out, outCols, outRows, in->type.type); + + #define PS_IMAGE_REBIN_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + ps##TYPE *outRowData; \ + ps##TYPE *vecData = vec->data.TYPE; \ + psMaskType *inRowMask = NULL; \ + for (psS32 row = 0; row < outRows; row++) { \ + outRowData = out->data.TYPE[row]; \ + psS32 inCurrentRow = row * scale; \ + psS32 inNextRow = (row + 1) * scale; \ + for (psS32 col = 0; col < outCols; col++) { \ + psS32 inCurrentCol = col * scale; \ + psS32 inNextCol = (col + 1) * scale; \ + psS32 n = 0; \ + for (psS32 inRow = inCurrentRow; inRow < inNextRow && inRow < inRows; inRow++) { \ + ps##TYPE* inRowData = in->data.TYPE[inRow]; \ + if (mask != NULL) { \ + inRowMask = mask->data.PS_TYPE_MASK_DATA[inRow]; \ + } \ + for (psS32 inCol = inCurrentCol; inCol < inNextCol && inCol < inCols; inCol++) { \ + if (maskData != NULL) { \ + maskData[n] = inRowMask[inCol]; \ + } \ + vecData[n++] = inRowData[inCol]; \ + } \ + } \ + vec->n = n; \ + maskVec->n = n; \ + psVectorStats(myStats, vec, NULL, maskVec, maskVal); \ + outRowData[col] = (ps##TYPE)psStatsGetValue(myStats, statistic); \ + } \ + } \ + } \ + break; + + switch (in->type.type) { + // PS_IMAGE_REBIN_CASE(U8); Not valid since psVectorStats doesn't allow + PS_IMAGE_REBIN_CASE(U16); + PS_IMAGE_REBIN_CASE(U32); // Not a requirement + PS_IMAGE_REBIN_CASE(U64); // Not a requirement + PS_IMAGE_REBIN_CASE(S8); + // PS_IMAGE_REBIN_CASE(S16); Not valid since psVectorStats doesn't allow + PS_IMAGE_REBIN_CASE(S32); // Not a requirement + PS_IMAGE_REBIN_CASE(S64); // Not a requirement + PS_IMAGE_REBIN_CASE(F32); + PS_IMAGE_REBIN_CASE(F64); + // PS_IMAGE_REBIN_CASE(C32); Not valid since psVectorStats doesn't allow + // PS_IMAGE_REBIN_CASE(C64); Not valid since psVectorStats doesn't allow + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,in->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + psFree(out); + out = NULL; + } + } + + psFree(vec); + psFree(maskVec); + psFree(myStats); + + return out; +} + +psImage* psImageResample(psImage* out, + const psImage* in, + int scale, + psImageInterpolateMode mode) +{ + psS32 outRows; + psS32 outCols; + float invScale; + + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + + if (scale < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified scale value, %d, must be a positive value."), + scale); + psFree(out); + return NULL; + } + + if (mode > PS_INTERPOLATE_LANCZOS4_VARIANCE ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified interpolation mode, %d, is unsupported."), + mode); + psFree(out); + return NULL; + } + + // create an output image of the same size + // and type + outRows = in->numRows * scale; + outCols = in->numCols * scale; + invScale = 1.0f / (float)scale; + + #define PSIMAGE_RESAMPLE_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + out = psImageRecycle(out,outCols, outRows, PS_TYPE_##TYPE); \ + for (psS32 row=0;rowdata.TYPE[row]; \ + float inRow = (float)row * invScale; \ + for (psS32 col=0;coltype.type) { + PSIMAGE_RESAMPLE_CASE(U8) + PSIMAGE_RESAMPLE_CASE(U16) + PSIMAGE_RESAMPLE_CASE(U32) + PSIMAGE_RESAMPLE_CASE(U64) + PSIMAGE_RESAMPLE_CASE(S8) + PSIMAGE_RESAMPLE_CASE(S16) + PSIMAGE_RESAMPLE_CASE(S32) + PSIMAGE_RESAMPLE_CASE(S64) + PSIMAGE_RESAMPLE_CASE(F32) + PSIMAGE_RESAMPLE_CASE(F64) + PSIMAGE_RESAMPLE_CASE(C32) + PSIMAGE_RESAMPLE_CASE(C64) + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,in->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + psFree(out); + out = NULL; + } + } + + return out; +} + +psImage* psImageRoll(psImage* out, + const psImage* input, + int dx, + int dy) +{ + psS32 outRows; + psS32 outCols; + psS32 elementSize; + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + // create an output image of the same size + // and type + outRows = input->numRows; + outCols = input->numCols; + elementSize = PSELEMTYPE_SIZEOF(input->type.type); + out = psImageRecycle(out, outCols, outRows, input->type.type); + + // make dx and dy between 0 and outCols or + // outRows, respectively + dx = dx % outCols; + dy = dy % outRows; + if (dx < 0) { + dx += outCols; + } + if (dy < 0) { + dy += outRows; + } + + psS32 segment1Size = elementSize * (outCols - dx); + psS32 segment2Size = elementSize * dx; + + for (psS32 row = 0; row < outRows; row++) { + psS32 inRowNumber = row + dy; + + if (inRowNumber >= outRows) { + inRowNumber -= outRows; + } + psU8* inRow = input->data.U8[inRowNumber]; // use byte arithmetic for all types + psU8* outRow = out->data.U8[row]; + + memcpy(outRow, inRow + segment2Size, segment1Size); + memcpy(outRow + segment1Size, inRow, segment2Size); + } + + return out; +} + +psImage* psImageRotate(psImage* out, + const psImage* input, + float angle, + double complex exposed, + psImageInterpolateMode mode) +{ + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + // put the angle in the range of 0...2PI. + angle = (float)((double)angle - (2.0*M_PI) * floor(angle / (2.0*M_PI))); + + if (fabsf(angle - M_PI_2) < FLT_EPSILON) { + // perform 1/4 rotate counter-clockwise + psS32 numRows = input->numCols; + psS32 numCols = input->numRows; + psS32 lastCol = numCols - 1; + psElemType type = input->type.type; + + out = psImageRecycle(out, numCols, numRows, type); + + #define PSIMAGE_ROTATE_LEFT_90(TYPE) \ + case PS_TYPE_##TYPE: { \ + ps##TYPE** inData = input->data.TYPE; \ + for (psS32 row=0;rowdata.TYPE[row]; \ + for (psS32 col=0;colnumRows; + psS32 lastRow = numRows - 1; + psS32 numCols = input->numCols; + psS32 lastCol = numCols - 1; + psElemType type = input->type.type; + + out = psImageRecycle(out, numCols, numRows, type); + + #define PSIMAGE_ROTATE_180_CASE(TYPE) \ + case PS_TYPE_##TYPE: { \ + for (psS32 row=0;rowdata.TYPE[row]; \ + ps##TYPE* inRow = input->data.TYPE[lastRow-row]; \ + for (psS32 col=0;colnumCols; + psS32 lastRow = numRows - 1; + psS32 numCols = input->numRows; + psElemType type = input->type.type; + + out = psImageRecycle(out, numCols, numRows, type); + + #define PSIMAGE_ROTATE_RIGHT_90(TYPE) \ + case PS_TYPE_##TYPE: { \ + ps##TYPE** inData = input->data.TYPE; \ + for (psS32 row=0;rowdata.TYPE[row]; \ + for (psS32 col=0;coltype.type); + } else { + psElemType type = input->type.type; + psS32 numRows = input->numRows; + psS32 numCols = input->numCols; + float centerX = (float)(numCols) / 2.0f; + float centerY = (float)(numRows) / 2.0f; + double cosT = cosf(angle); + double sinT = sinf(angle); + + // calculate the corners of the rotated image so we know the proper output image size. + // x' = x cos(t) + y sin(t); i.e, x' = (x-centerX)*cosT + (y-centerY)*sinT; + // y' = y cos(t) - x sin(t); i.e. y' = (y-centerY)*cosT - (x-centerX)*sinT; + + psS32 outCols = ceil(abs(numCols * cosT) + abs(numRows * sinT)) + 1; + psS32 outRows = ceil(abs(numCols * sinT) + abs(numRows * cosT)) + 1; + float minX = (float)outCols / -2.0f; + psS32 intMinY = outRows / -2; + + out = psImageRecycle(out, outCols, outRows, type); + + /* optimized public domain rotation routine by Karl Lager + * + * float cosT,sinT; + * cosT = cos(t); + * sinT = sin(t); + * for (y = min_y; y <= max_y; y++) { + * x' = min_x * cosT + y * sinT + x1'; + * y' = y * cosT - min_x * sinT + y1'; + * for (x = min_x; x <= max_x; x++) { + * if (x', y') is in the bounds of the bitmap, get pixel + * (x', y') and plot the pixel to (x, y) on screen. + * x' += cosT; + * y' -= sinT; + * } + * } + */ + + // precalculate some figures that are used within loop + float minXTimesCosTPlusCenterX = minX * cosT + centerX; + float CenterYMinusminXTimesSinT = centerY - minX * sinT; + + #define PSIMAGE_ROTATE_ARBITRARY_LOOP(TYPE,MODE) { \ + if (creal(exposed) < PS_MIN_##TYPE || \ + creal(exposed) > PS_MAX_##TYPE || \ + cimag(exposed) < PS_MIN_##TYPE || \ + cimag(exposed) > PS_MAX_##TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g%+gi, is not the the range of input psImage's valid pixel values (%s), i.e. [%g:%g]."), \ + "exposed", \ + creal(exposed),cimag(exposed), \ + PS_TYPE_##TYPE##_NAME, \ + (double)PS_MIN_##TYPE,(double)PS_MAX_##TYPE); \ + psFree(out); \ + out = NULL; \ + break; \ + } \ + float inX; \ + float inY; \ + ps##TYPE* outRow; \ + for (psS32 y = 0; y < outRows; y++) { \ + inX = minXTimesCosTPlusCenterX + (y+intMinY) * sinT; \ + inY = CenterYMinusminXTimesSinT + (y+intMinY) * cosT; \ + outRow = out->data.TYPE[y]; \ + for (psS32 x = 0; x < outCols; x++) { \ + outRow[x] = p_psImagePixelInterpolate##MODE##_##TYPE(input,inX,inY,NULL,0,exposed); \ + inX += cosT; \ + inY -= sinT; \ + } \ + } \ + } + + #define PSIMAGE_ROTATE_ARBITRARY_CASE(MODE) \ + case PS_INTERPOLATE_##MODE: \ + switch (type) { \ + case PS_TYPE_U8: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(U8,MODE); \ + break; \ + case PS_TYPE_U16: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(U16,MODE); \ + break; \ + case PS_TYPE_U32: /* Not a requirement */ \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(U32,MODE); \ + break; \ + case PS_TYPE_U64: /* Not a requirement */ \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(U64,MODE); \ + break; \ + case PS_TYPE_S8: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(S8,MODE); \ + break; \ + case PS_TYPE_S16: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(S16,MODE); \ + break; \ + case PS_TYPE_S32: /* Not a requirement */ \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(S32,MODE); \ + break; \ + case PS_TYPE_S64: /* Not a requirement */ \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(S64,MODE); \ + break; \ + case PS_TYPE_F32: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(F32,MODE); \ + break; \ + case PS_TYPE_F64: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(F64,MODE); \ + break; \ + case PS_TYPE_C32: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(C32,MODE); \ + break; \ + case PS_TYPE_C64: \ + PSIMAGE_ROTATE_ARBITRARY_LOOP(C64,MODE); \ + break; \ + default: { \ + char* typeStr; \ + PS_TYPE_NAME(typeStr,type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Specified psImage type, %s, is not supported."), \ + typeStr); \ + psFree(out); \ + out = NULL; \ + } \ + } \ + break; + + switch (mode) { + PSIMAGE_ROTATE_ARBITRARY_CASE(FLAT); + PSIMAGE_ROTATE_ARBITRARY_CASE(BILINEAR); + PSIMAGE_ROTATE_ARBITRARY_CASE(BILINEAR_VARIANCE); + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified interpolation mode, %d, is unsupported."), + mode); + psFree(out); + out = NULL; + } + } + + return out; +} + +// XXX this function seems to work (except for edge pixels and masked pixels +// but the function below does not define the right 3x3 kernels. look this +// up +psImage *p_psImageShiftKernel_F32( + psImage *out, + const psImage *input, + const psImage *kernel) +{ + + PS_ASSERT_IMAGE_NON_NULL(input, NULL); + PS_ASSERT_IMAGE_NON_NULL(kernel, NULL); + + if ((kernel->numCols % 2 == 0) || (kernel->numRows % 2 == 0)) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("kernel must have odd dimensions")); + return NULL; + } + int Xk = (kernel->numCols - 1) / 2; + int Yk = (kernel->numRows - 1) / 2; + + int outRows = input->numRows; + int outCols = input->numCols; + out = psImageRecycle(out, outCols, outRows, input->type.type); + psImageInit (out, 0.0); + + // need to handle the edge cases... + for (int row = 1; row < outRows-1; row++) { + psF32 *outRow = out->data.F32[row]; + psF32 **inValue = input->data.F32; + for (int col = 1; col < outCols-1; col++) { + double value = 0; + double norm = 0; + psF32 **kernValue = kernel->data.F32; + for (int yi = -Yk; yi <= Yk; yi++) { + for (int xi = -Xk; xi <= Xk; xi++) { + value += inValue[row+yi][col+xi]*kernValue[yi+Yk][xi+Xk]; + norm += kernValue[yi+Yk][xi+Xk]; + } + } + // include the mask tests and divide-by-zero test + outRow[col] = value / norm; + } + } + + return (out); +} + +// XXX fix the definition of the interpolation kernels and add integer shifts +psImage *psImageShiftKernel ( + psImage *out, + const psImage *input, + float dx, float dy, psImageInterpolateMode mode) +{ + + psImage *kernel = NULL; + + switch (mode) { + case PS_INTERPOLATE_BICUBE: + kernel = psImageAlloc (3, 3, PS_TYPE_F32); + for (int iy = -1; iy <= +1; iy++) { + for (int ix = -1; ix <= +1; ix++) { + kernel->data.F32[iy+1][ix+1] = 5 - 3*PS_SQR(ix+dx) - 3*PS_SQR(iy+dy); + } + } + out = p_psImageShiftKernel_F32 (out, input, kernel); + break; + + case PS_INTERPOLATE_GAUSS: + kernel = psImageAlloc (3, 3, PS_TYPE_F32); + for (int iy = -1; iy <= +1; iy++) { + for (int ix = -1; ix <= +1; ix++) { + kernel->data.F32[iy+1][ix+1] = exp(-0.5*PS_SQR(ix+dx) -0.5*PS_SQR(iy+dy)); + } + } + out = p_psImageShiftKernel_F32 (out, input, kernel); + break; + + default: + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("shift kernel for %d not defined"), mode); + return NULL; + } + psFree (kernel); + return (out); +} + +psImage* psImageShift(psImage* out, + const psImage* input, + float dx, + float dy, + double complex exposed, + psImageInterpolateMode mode) +{ + psS32 outRows; + psS32 outCols; + psS32 elementSize; + psElemType type; + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + // create an output image of the same size + // and type + outRows = input->numRows; + outCols = input->numCols; + type = input->type.type; + elementSize = PSELEMTYPE_SIZEOF(type); + out = psImageRecycle(out, outCols, outRows, type); + + #define PSIMAGE_SHIFT_CASE(MODE,TYPE) \ +case PS_TYPE_##TYPE: \ + if (creal(exposed) < PS_MIN_##TYPE || \ + creal(exposed) > PS_MAX_##TYPE || \ + cimag(exposed) < PS_MIN_##TYPE || \ + cimag(exposed) > PS_MAX_##TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g%+gi, is not the the range of input psImage's valid pixel values (%s), i.e. [%g:%g]."), \ + "exposed", \ + creal(exposed),cimag(exposed), \ + PS_TYPE_##TYPE##_NAME, \ + (double)PS_MIN_##TYPE,(double)PS_MAX_##TYPE); \ + psFree(out); \ + out = NULL; \ + break; \ + } \ + /* note: output(i,j) = input(i+0.5-dx,j+0.5-dy) */ \ + /* positive dx,dy moves pixel i-dx,j-dy to i,y */ \ + /* also: pixel center is 0.5,0.5 */ \ + for (psS32 row=0;rowdata.TYPE[row]; \ + float y = row + 0.5 - dy; \ + for (psS32 col=0;coltype.type) { \ + PSIMAGE_SHIFT_CASE(MODE,U8); \ + PSIMAGE_SHIFT_CASE(MODE,U16); \ + PSIMAGE_SHIFT_CASE(MODE,U32); /* Not a requirement */ \ + PSIMAGE_SHIFT_CASE(MODE,U64); /* Not a requirement */ \ + PSIMAGE_SHIFT_CASE(MODE,S8); \ + PSIMAGE_SHIFT_CASE(MODE,S16); \ + PSIMAGE_SHIFT_CASE(MODE,S32); /* Not a requirement */ \ + PSIMAGE_SHIFT_CASE(MODE,S64); /* Not a requirement */ \ + PSIMAGE_SHIFT_CASE(MODE,F32); \ + PSIMAGE_SHIFT_CASE(MODE,F64); \ + PSIMAGE_SHIFT_CASE(MODE,C32); \ + PSIMAGE_SHIFT_CASE(MODE,C64); \ + \ + default: { \ + char* typeStr; \ + PS_TYPE_NAME(typeStr,type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Specified psImage type, %s, is not supported."), \ + typeStr); \ + psFree(out); \ + out = NULL; \ + } \ + } \ + break; + + // EAM: added BICUBE + switch (mode) { + PSIMAGE_SHIFT_ARBITRARY_CASE(FLAT); + PSIMAGE_SHIFT_ARBITRARY_CASE(BILINEAR); + PSIMAGE_SHIFT_ARBITRARY_CASE(BILINEAR_VARIANCE); + PSIMAGE_SHIFT_ARBITRARY_CASE(BICUBE); + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified interpolation mode, %d, is unsupported."), + mode); + psFree(out); + out = NULL; + } + + return out; +} + +psImage* psImageTransform(psImage *output, + psPixels** blankPixels, + const psImage *input, + const psImage *inputMask, + psMaskType inputMaskVal, + const psPlaneTransform *outToIn, + psRegion region, + const psPixels* pixels, + psImageInterpolateMode mode, + double exposedValue) +{ + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(output); + return NULL; + } + psElemType type = input->type.type; + + if (blankPixels != NULL && *blankPixels == NULL) { + *blankPixels = psPixelsAlloc(0); + } + + if (inputMask != NULL) { + if (input->numRows != inputMask->numRows || input->numCols != inputMask->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Input psImage mask size, %dx%d, does not match psImage input size, %dx%d."), + input->numCols, input->numRows, + inputMask->numCols, inputMask->numRows ); + psFree(output); + return NULL; + } + if (inputMask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,inputMask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type, %s, is not the supported mask datatype of %s."), + typeStr, PS_TYPE_MASK_NAME); + psFree(output); + return NULL; + } + } + + if (outToIn == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified input transform can not be NULL.")); + return NULL; + } + + int row0; + int row1; + int col0; + int col1; + int numRows; + int numCols; + if (output == NULL) { // output image size is determined by psRegion + row0 = region.y0; + row1 = region.y1; + col0 = region.x0; + col1 = region.x1; + //If [0,0,0,0] specified, the whole image is to be included + if (row0 == 0 && col0 == 0 && row1 == 0 && col1 == 0) { + row0 = input->row0; + col0 = input->col0; + row1 = input->row0 + input->numRows - 1; + col1 = input->col0 + input->numCols - 1; + } + if (col1 < 1) { + col1 += input->col0 + input->numCols; + } + + if (row1 < 1) { + row1 += input->row0 + input->numRows; + } + + numRows = row1 - row0; + numCols = col1 - col0; + + if (numRows < 1 || numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "The specified region is invalid."); + psFree(output); + return NULL; + } + // create the output image. + output = psImageRecycle(output, numCols, numRows, input->type.type); + output->col0 = region.x0; + output->row0 = region.y0; + } else { // size of output is determined by output parameter + numRows = output->numRows; + numCols = output->numCols; + row0 = output->row0; + col0 = output->col0; + row1 = row0+numRows -1; + col1 = col0+numCols -1; + } + + // loop through the output image using the domain above and transform + // each output pixel to input coordinates and use psImagePixelInterpolate + // to determine the pixel value. + psPlane outPosition; + psPlane* inPosition = NULL; + + #define PSIMAGE_TRANSFORM_DOTRANSFORM(TYPE,MODE) \ + /* apply the transform to get the position in the input image */ \ + inPosition = psPlaneTransformApply(inPosition, outToIn, &outPosition); \ + \ + if (inPosition == NULL) { \ + psError(PS_ERR_UNKNOWN, false, \ + "Failed to apply the transform"); \ + psFree(output); \ + return NULL; \ + } \ + /* interpolate the cooresponding input pixel to get the output pixel value. */ \ + ps##TYPE value = p_psImagePixelInterpolate##MODE##_##TYPE(input, \ + inPosition->x, inPosition->y, \ + inputMask, inputMaskVal, NAN); \ + /* psFree(inPosition); */\ + if (isnan(value)) { \ + if (blankPixels != NULL) { \ + p_psPixelsAppend(*blankPixels, (*blankPixels)->nalloc, outPosition.x, outPosition.y); \ + } \ + value = exposedValue; \ + } \ + + #define PSIMAGE_TRANSFORM_LOOP(TYPE, MODE) { \ + for (int row = 0; row < numRows; row++) { \ + outPosition.y = row+row0; \ + ps##TYPE* outputData=output->data.TYPE[row]; \ + for (int col = 0; col < numCols; col++) { \ + outPosition.x = col+col0; \ + PSIMAGE_TRANSFORM_DOTRANSFORM(TYPE,MODE) \ + outputData[col] = value; \ + } \ + } \ + } + + #define PSIMAGE_TRANSFORM_FROMLIST(TYPE, MODE) { \ + int n = pixels->n; \ + for (int i= 0; i < n; i++) { \ + int x = pixels->data[i].x; \ + int y = pixels->data[i].y; \ + if (x >= col0 && x < col1 && y >= row0 && y < row1) { \ + outPosition.x = x; \ + outPosition.y = y; \ + PSIMAGE_TRANSFORM_DOTRANSFORM(TYPE,MODE) \ + output->data.TYPE[y][x] = value; \ + } \ + } \ + } + + #define PSIMAGE_TRANSFORM_CASE(MODE) \ +case PS_INTERPOLATE_##MODE: \ + switch (type) { \ + case PS_TYPE_F32: \ + PSIMAGE_TRANSFORM_LOOP(F32,MODE); \ + break; \ + case PS_TYPE_F64: \ + PSIMAGE_TRANSFORM_LOOP(F64,MODE); \ + break; \ + default: { \ + char* typeStr; \ + PS_TYPE_NAME(typeStr,type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Specified psImage type, %s, is not supported."), \ + typeStr); \ + psFree(output); \ + return NULL; \ + } \ + } \ + break; + + switch (mode) { + PSIMAGE_TRANSFORM_CASE(FLAT); + PSIMAGE_TRANSFORM_CASE(BILINEAR); + PSIMAGE_TRANSFORM_CASE(BILINEAR_VARIANCE); + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified interpolation mode, %d, is unsupported."), + mode); + psFree(output); + return NULL; + } + + psFree(inPosition); + + return output; +} + + +#define FLIP_X_CASE(TYPENAME,TYPE) \ +case TYPENAME: { \ + long numRows = input->numRows; \ + long numCols = input->numCols; \ + for (long i = 0; i < numRows; i++) { \ + for (long j = 0; j < numCols; j++) { \ + output->data.TYPE[i][j] = input->data.TYPE[i][numCols - j - 1]; \ + } \ + } \ + break; \ +} + +#define FLIP_Y_CASE(TYPENAME,TYPE) \ +case TYPENAME: { \ + long numRows = input->numRows; \ + long numCols = input->numCols; \ + for (long i = 0; i < numRows; i++) { \ + for (long j = 0; j < numCols; j++) { \ + output->data.TYPE[i][j] = input->data.TYPE[numRows - i - 1][j]; \ + } \ + } \ + break; \ +} + +psImage *psImageFlip(psImage *output, const psImage *input, bool xFlip, bool yFlip) +{ + PS_ASSERT_IMAGE_NON_NULL(input, NULL); + + if (xFlip && yFlip) { + // This is equivalent to a 180 degree rotation; + return psImageRotate(output, input, M_PI, NAN, PS_INTERPOLATE_BILINEAR); + } + + if (!xFlip && !yFlip) { + // They want something, so let's give it to them + return psImageCopy(output, input, input->type.type); + } + + output = psImageRecycle(output, input->numCols, input->numRows, input->type.type); + + if (xFlip) { + switch (input->type.type) { + FLIP_X_CASE(PS_TYPE_U8, U8); + FLIP_X_CASE(PS_TYPE_U16, U16); + FLIP_X_CASE(PS_TYPE_U32, U32); + FLIP_X_CASE(PS_TYPE_U64, U64); + FLIP_X_CASE(PS_TYPE_S8, S8); + FLIP_X_CASE(PS_TYPE_S16, S16); + FLIP_X_CASE(PS_TYPE_S32, S32); + FLIP_X_CASE(PS_TYPE_S64, S64); + FLIP_X_CASE(PS_TYPE_F32, F32); + FLIP_X_CASE(PS_TYPE_F64, F64); + FLIP_X_CASE(PS_TYPE_C32, C32); + FLIP_X_CASE(PS_TYPE_C64, C64); + default: + psFree(output); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Unknown type for input image: %x\n", input->type.type); + return NULL; + } + return output; + } + if (yFlip) { + switch (input->type.type) { + FLIP_Y_CASE(PS_TYPE_U8, U8); + FLIP_Y_CASE(PS_TYPE_U16, U16); + FLIP_Y_CASE(PS_TYPE_U32, U32); + FLIP_Y_CASE(PS_TYPE_U64, U64); + FLIP_Y_CASE(PS_TYPE_S8, S8); + FLIP_Y_CASE(PS_TYPE_S16, S16); + FLIP_Y_CASE(PS_TYPE_S32, S32); + FLIP_Y_CASE(PS_TYPE_S64, S64); + FLIP_Y_CASE(PS_TYPE_F32, F32); + FLIP_Y_CASE(PS_TYPE_F64, F64); + FLIP_Y_CASE(PS_TYPE_C32, C32); + FLIP_Y_CASE(PS_TYPE_C64, C64); + default: + psFree(output); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Unknown type for input image: %x\n", input->type.type); + return NULL; + } + return output; + } + + psAbort("Should never get here.\n"); + return NULL; +} Index: /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageGeomManip.h (revision 12167) @@ -0,0 +1,198 @@ +/* @file psImageGeomManip.h + * + * @brief Contains basic image geometry manipulation operations, as + * specified in the PSLIB SDRS sections "Image Geometry Manipulations". + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#ifndef PS_IMAGE_GEOM_MANIP_H +#define PS_IMAGE_GEOM_MANIP_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psCoord.h" +#include "psStats.h" +#include "psPixels.h" + +/** Rebin image to new scale. + * + * A new image is constructed in which the dimensions are reduced by a factor of + * 1/scale. The scale, always a positive number, is equal in each dimension and + * specified the number of pixels used to define a new pixel in the output image. + * The output image is generated from all input image pixels. This function is + * defined for psU8, psS8, psS16, psF32, psF64, psC32, and psC64. + * + * @return psImage new image formed by rebinning input image. + */ +psImage* psImageRebin( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* in, ///< input image + const psImage* mask, ///< mask for input image. If NULL, no masking is done. + psMaskType maskVal, ///< the bits to check in mask. + int scale, ///< the scale to rebin for each dimension + const psStats* stats + ///< the statistic to perform when rebinning. Only one method should be set. +); + +/** Resample image to new scale. + * + * A new image is constructed in which the dimensions are increased by a + * factor of scale. The scale, always a positive number, is equal in each + * dimension. The output image is generated from all input image pixels. + * Each pixel in the output image is derived by interpolating between + * neighboring pixels using the specified interpolation method (mode). + * + * @return psImage* resampled image result + */ +psImage* psImageResample( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* in, ///< input image + int scale, ///< resample scaling factor + psImageInterpolateMode mode ///< the interpolation mode used in resampling +); + +/** Rotate the input image by given angle, specified in degrees. + * + * The output image must contain all of the pixels from the input image in + * their new frame. Pixels in the output image which do not map to input + * pixels should be set to exposed. The center of rotation is always the + * center pixel of the image. The rotation is specified in the sense that a + * positive angle is an anti-clockwise rotation. This function must be + * defined for the following types: psU8, psU16, psS8, psS16, psF32, psF64, + * psC32, psC64. + * + * @return psImage* the rotated image result. + */ +psImage* psImageRotate( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* input, ///< input image + float angle, ///< the rotation angle in radians. + double complex exposed, ///< the output image pixel values for non-imagery areas + psImageInterpolateMode mode ///< the interpolation mode used +); + +/** Shift image by an arbitrary number of pixels (dx,dy) in either direction. + * + * If the shift values are fractional, the output pixel values should + * interpolate between the input pixel values. The output image has the same + * dimensions as the input image. Pixels which fall off the edge of the + * output image are lost. Newly exposed pixels are set to the value given by + * exposed. This function must be defined for the following types: psU8, + * psU16, psS8, psS16, psF32, psF64, psC32, psC64. + * + * @return psImage* the shifted image result. + */ +psImage* psImageShift( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* input, ///< input image + float dx, ///< the shift in x direction. + float dy, ///< the shift in y direction. + double complex exposed, ///< the output image pixel values for non-imagery areas + psImageInterpolateMode mode ///< the interpolation mode to use +); + +/** Shift image by an arbitrary number of pixels (dx,dy) in either direction. + * + * If the shift values are fractional, the output pixel values should + * interpolate between the input pixel values. The output image has the same + * dimensions as the input image. Pixels which fall off the edge of the + * output image are lost. Newly exposed pixels are set to the value given by + * exposed. This function must be defined for the following types: psU8, + * psU16, psS8, psS16, psF32, psF64, psC32, psC64. + * + * This implementation uses a NxN kernel generated based on the interpolation method + * the image is first shifted by a fractional amount with the kernel, then + * shifted in place by an integer amount. + * + * XXX the integer shift portion is not implemented + * XXX the exposed pixels are not properly replaced + * XXX the algorithm can properly handle a mask, but the API does not include + * it (and it is not implemented) + * + * @return psImage* the shifted image result. + */ +psImage* psImageShiftKernel( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* input, ///< input image + float dx, ///< the shift in x direction. + float dy, ///< the shift in y direction. + psImageInterpolateMode mode ///< the interpolation mode to use +); + +// XXX should this be global private or local static? +psImage *p_psImageShiftKernel_F32( + psImage *out, + const psImage *input, + const psImage *kernel); + +/** Roll image by an integer number of pixels in either direction. + * + * The output image is the same dimensions as the input image. Edge pixels + * wrap to the other side (no values are lost). This function is + * defined for psU8, psS8, psS16, psF32, psF64, psC32, and psC64. + * + * @return psImage* the rolled version of the input image. + */ +psImage* psImageRoll( + psImage* out, ///< an psImage to recycle. If NULL, a new image is created + const psImage* input, ///< input image + int dx, ///< number of pixels to roll in the x-dimension + int dy ///< number of pixels to roll in the y-dimension +); + +/** Transform the input image according the supplied transformation. + * + * Transform the input image according the supplied transformation. The size + * of the transformed image is defined by the supplied output image, if + * non-NULL, or the region otherwise (size region.x1 - region.x0 by region.y1 + * region.y0, with out->x0 = region.x0 and out->y0 = region.y0). If the + * inputMask is non-NULL, those pixels in the inputMask matching inputMaskVal + * are to be ignored in the transformation. The inputMask must be of type + * psU8, and of the same size as the input, otherwise the function shall + * generate an error and return NULL. The transformation outToIn specifies the + * coordinates in the input image of a pixel in the output image — note that + * this is the reverse of what might be naively expected, but it is what is + * required in order to use psImagePixelInterpolate. If the pixels array is + * non-NULL, it shall consist of psPixelCoords, and only those pixels in the + * output image shall be transformed; otherwise, the entire image is + * generated. The interpolation is performed using the specified interpolation + * mode. Where a pixel in the output image does not correspond to a pixel in + * the input image (or all appropriate pixels in the input image are + * masked), the value shall be set to exposed, and the pixel added to the + * appropriate list of pixels (psPixels) in the array of blankPixels for + * return to the user. This function must be capable of handling the following + * types for the input (with corresponding types for the output): psF32, psF64. + + * + * @return psImage* The transformed image. + */ +psImage* psImageTransform( + psImage *output, ///< psImage to recycle, or NULL + psPixels** blankPixels, ///< list of pixels in output image not set, or NULL if no list is desired. + const psImage *input, ///< psImage to apply transform to + const psImage *inputMask, ///< if not NULL, mask of input psImage + psMaskType inputMaskVal, ///< masking value for inputMask + const psPlaneTransform *outToIn, ///< the transform to apply + psRegion region, ///< the size of the transformed image + const psPixels* pixels, /**< if not NULL, consists of psPixelCoords and specifies + * which pixels in output image shall be transformed; + * otherwise, entire image generated*/ + psImageInterpolateMode mode, ///< the interpolation scheme to be used + double exposedValue ///< Exposed value to which non-corresponding pixels are set +); + +// Flip the input image +psImage *psImageFlip(psImage *output, // Output image, or NULL + const psImage *input, // Input image + bool xFlip, // Flip x axis? + bool yFlip // Flip y axis? + ); + +/// @} +#endif // #ifndef PS_IMAGE_GEOM_MANIP_H Index: /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.c (revision 12167) @@ -0,0 +1,310 @@ +/** @file psImageMaskOps.c + * + * @brief Contains basic image pixel and geometry manipulation operations, as + * specified in the PSLIB SDRS sections "Mask Operations" + * + * @ingroup Image + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include // for isfinite(), etc. +#include +#include // for memcpy, etc. + +#include "psImageMaskOps.h" + +#include "psError.h" +#include "psImage.h" +#include "psStats.h" +#include "psMemory.h" +#include "psAssert.h" + +#include "psCoord.h" + +// mask the area contained by the region +// the region is defined wrt the parent image +void psImageMaskRegion(psImage *image, + psRegion region, + const char *op, + psMaskType maskValue) +{ + if (image == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid image input. Image is NULL.\n"); + return; + } + for (int j = 0; j < image->numRows; j++) { + for (int i = 0; i < image->numCols; i++) { + if ( (j + image->row0) >= region.y0 && + (j + image->row0) <= region.y1 && + (i + image->col0) >= region.x0 && + (i + image->col0) <= region.x1 ) { + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] ^= maskValue; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + "The logical operation specified is incorrect\n"); + return; + } + } + } + } + /* + for (int iy = 0; iy < image->numRows; iy++) { + for (int ix = 0; ix < image->numCols; ix++) { + if (ix + image->col0 >= region.x0) + continue; + if (ix + image->col0 <= region.x1) + continue; + if (iy + image->row0 >= region.y0) + continue; + if (iy + image->row0 <= region.y1) + continue; + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] ^= maskValue; + } + } + } + */ +} + +// mask the area not contained by the region +// the region is defined wrt the parent image +void psImageKeepRegion(psImage *image, + psRegion region, + const char *op, + psMaskType maskValue) +{ + if (image == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid image input. Image is NULL.\n"); + return; + } + for (int j = 0; j < image->numRows; j++) { + for (int i = 0; i < image->numCols; i++) { + if ( (j + image->row0) < region.y0 || + (j + image->row0) > region.y1 || + (i + image->col0) < region.x0 || + (i + image->col0) > region.x1 ) { + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[j][i] ^= maskValue; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + "The logical operation specified is incorrect\n"); + return; + } + } + } + } + /* + for (int iy = 0; iy < image->numRows; iy++) { + for (int ix = 0; ix < image->numCols; ix++) { + if (ix + image->col0 < region.x0) + goto maskit; + if (ix + image->col0 > region.x1) + goto maskit; + if (iy + image->row0 < region.y0) + goto maskit; + if (iy + image->row0 > region.y1) + goto maskit; + continue; + maskit: + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] ^= maskValue; + } + }Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + } + */ +} + +// mask the area contained by the region +// the region is defined wrt the parent image +void psImageMaskCircle(psImage *image, + double x, + double y, + double radius, + const char *op, + psMaskType maskValue) +{ + if (image == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid image input. Image is NULL.\n"); + return; + } + + + double dx, dy, r2, R2; + + R2 = PS_SQR(radius); + + for (int iy = 0; iy < image->numRows; iy++) { + for (int ix = 0; ix < image->numCols; ix++) { + dx = ix + image->col0 - x; + dy = iy + image->row0 - y; + r2 = PS_SQR(dx) + PS_SQR(dy); + if (r2 <= R2) { + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] ^= maskValue; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + "The logical operation specified is incorrect\n"); + return; + } + } + } + } +} + +// mask the area contained by the region +// the region is defined wrt the parent image +void psImageKeepCircle(psImage *image, + double x, + double y, + double radius, + const char *op, + psMaskType maskValue) +{ + + if (image == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid image input. Image is NULL.\n"); + return; + } + double dx, dy, r2, R2; + + R2 = PS_SQR(radius); + + for (int iy = 0; iy < image->numRows; iy++) { + for (int ix = 0; ix < image->numCols; ix++) { + dx = ix + image->col0 - x; + dy = iy + image->row0 - y; + r2 = PS_SQR(dx) + PS_SQR(dy); + if (r2 > R2) { + if ( !strncmp(op, "&", 2) || !strncmp(op, "AND", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] &= maskValue; + } else if ( !strncmp(op, "|", 2) || !strncmp(op, "OR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] |= maskValue; + } else if ( !strncmp(op, "=", 2) || !strncmp(op, "EQUAL", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] = maskValue; + } else if ( !strncmp(op, "^", 2) || !strncmp(op, "XOR", 5) ) { + image->data.PS_TYPE_MASK_DATA[iy][ix] ^= maskValue; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + "The logical operation specified is incorrect\n"); + return; + } + } + } + } +} + +psImage *psImageGrowMask(psImage *out, + const psImage *in, + psMaskType maskVal, + unsigned int growSize, + psMaskType growVal) +{ + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Invalid input image. Input image cannot be NULL.\n"); + return NULL; + } + if (in->type.type != PS_TYPE_MASK) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Invalid input image. Input image type must match psMaskType.\n"); + return NULL; + } + if (out != NULL) { + if (out->numCols != in->numCols || out->numRows != in->numRows) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid out image. Size of out does not match size of in.\n"); + return NULL; + } + if (out->type.type != in->type.type) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid out image. Type of out does not match type of in.\n"); + return NULL; + } + } + if (out == NULL) { + out = psImageAlloc(in->numCols, in->numRows, in->type.type); + } + psImage *changed = psImageAlloc(in->numCols, in->numRows, in->type.type); + int k,l,m,n; + for (k = 0; k < in->numRows; k++) { + for (l = 0; l < in->numCols; l++) { + out->data.PS_TYPE_MASK_DATA[k][l] = in->data.PS_TYPE_MASK_DATA[k][l]; + changed->data.PS_TYPE_MASK_DATA[k][l] = 0; + } + } + for (int i = 0; i < in->numRows; i++) { + for (int j = 0; j < in->numCols; j++) { + if ( (in->data.PS_TYPE_MASK_DATA[i][j] & maskVal) != 0 && + changed->data.PS_TYPE_MASK_DATA[i][j] == 0) { + m = i - growSize; + if (m < 0) { + m = 0; + } + for (k = m; k <= (i + growSize) && k < in->numRows; k++) { + n = j - growSize; + if (n < 0) { + n = 0; + } + for (l = n; l <= (j + growSize) && l < in->numCols; l++) { + if (((k-i)*(k-i) + (l-j)*(l-j)) <= (growSize*growSize)) { + out->data.PS_TYPE_MASK_DATA[k][l] |= growVal; + if ( (in->data.PS_TYPE_MASK_DATA[i][j] & maskVal) == 0 ) { + changed->data.PS_TYPE_MASK_DATA[k][l] = 1; + } + } + } + } + } + } + } + psFree(changed); + return out; +} + Index: /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageMaskOps.h (revision 12167) @@ -0,0 +1,97 @@ +/* @file psImageMaskOps.h + * + * @brief Contains basic image pixel manipulation operations, as + * specified in the PSLIB SDRS sections "Mask Operations" + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_MASK_OPS_H +#define PS_IMAGE_MASK_OPS_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psCoord.h" +#include "psStats.h" +#include "psPixels.h" + +/** Sets the bits inside the region, ignoring pixels outside. + * + * The pixels are set by combining the existing pixel value and the given maskValue + * with a logical operation. The allowed operations are =, AND, OR, and XOR. + */ +void psImageMaskRegion( + psImage *image, ///< the image to set + psRegion region, ///< the specified region + const char *op, ///< the logical operation + psMaskType maskValue ///< the specified bits +); + +/** Sets the bits outside the region, ignoring pixels inside. + * + * The pixels are set by combining the existing pixel value and the given maskValue + * with a logical operation. The allowed operations are =, AND, OR, and XOR. + */ +void psImageKeepRegion( + psImage *image, ///< the image to set + psRegion region, ///< the specified region + const char *op, ///< the logical operation + psMaskType maskValue ///< the specified bits +); + +/** Sets the bits inside the circle, ignoring the pixels outside. + * + * The pixel values are set by combining the existing pixel value and the given maskValue + * with a logical operation. The allowed operations are =, AND, OR, and XOR. + */ +void psImageMaskCircle( + psImage *image, ///< the image to set + double x, ///< the x coordinate of the circle's center + double y, ///< the y coordinate of the circle's center + double radius, ///< the radius of the specified circle + const char *op, ///< the logical operation + psMaskType maskValue ///< the specified bits +); + +/** Sets the bits outside the circle, ignoring the pixels inside. + * + * The pixel values are set by combining the existing pixel value and the given maskValue + * with a logical operation. The allowed operations are =, AND, OR, and XOR. + */ +void psImageKeepCircle( + psImage *image, ///< the image to set + double x, ///< the x coordinate of the circle's center + double y, ///< the y coordinate of the circle's center + double radius, ///< the radius of the specified circle + const char *op, ///< the logical operation + psMaskType maskValue ///< the specified bits +); + +/** Grows the specified values on the imput mask image, in, returning the result. + * + * If out is NULL, then a new image of the same type and dimension as in shall + * be allocated and returned; otherwise out shall be modified. If out is non- + * NULL and does not have the same size and type as in, the function shall + * generate an error and return NULL. Pixels in the in image within growSize + * pixels (either horizontal or vertical) of a pixel which matches the maskVal + * shall have the corresponding pixel in the out image set to the growVal. + * + * @return psImage*: + */ +psImage *psImageGrowMask( + psImage *out, ///< the image to set and return + const psImage *in, ///< the input to image + psMaskType maskVal, ///< the specified mask value + unsigned int growSize, ///< the range of values from maskVal + psMaskType growVal ///< the output value to set +); + +/// @} +#endif // #ifndef PS_MASK_OPS_H Index: /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.c (revision 12167) @@ -0,0 +1,925 @@ +/** @file psImagePixelExtract.c + * + * @brief Contains basic image extraction operations, as specified in the + * PSLIB SDRS sections "Image Pixel Extractions". + * + * @ingroup Image + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.30 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psMemory.h" +#include "psVector.h" +#include "psImagePixelExtract.h" +#include "psError.h" + + + +#define VECTOR_STORE_ROW_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ +memcpy(out->data.TYPE, input->data.TYPE[row], input->numCols*sizeof(ps##TYPE)); \ +break; + +psVector *psImageRow(psVector *out, + const psImage *input, + int row) +{ + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + if (input->col0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. col0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->row0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. row0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numCols must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (input->numRows < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numRows must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (row >= (input->numRows + input->row0) ) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified row number is out of range for specified image.\n"); + psFree(out); + return NULL; + } else if ( row < input->row0 && row >= 0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified row number is out of range for specified image.\n"); + psFree(out); + return NULL; + } else if ( row < 0 ) { + row += input->numRows; + if ( row < 0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified row number is out of range for specified image.\n"); + psFree(out); + return NULL; + } + } else { + row -= input->row0; + } + + out = psVectorRecycle(out, input->numCols, input->type.type); + out->n = input->numCols; + + switch (input->type.type) { + VECTOR_STORE_ROW_CASE(S8); + VECTOR_STORE_ROW_CASE(S16); + VECTOR_STORE_ROW_CASE(S32); + VECTOR_STORE_ROW_CASE(S64); + VECTOR_STORE_ROW_CASE(U8); + VECTOR_STORE_ROW_CASE(U16); + VECTOR_STORE_ROW_CASE(U32); + VECTOR_STORE_ROW_CASE(U64); + VECTOR_STORE_ROW_CASE(F32); + VECTOR_STORE_ROW_CASE(F64); + VECTOR_STORE_ROW_CASE(C32); + VECTOR_STORE_ROW_CASE(C64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Specified psImage has invalid type for this function.\n"); + psFree(out); + return NULL; + } + + return out; +} + + +#define VECTOR_STORE_COL_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ +for (int i = 0; i < input->numRows; i++) { \ + out->data.TYPE[i] = input->data.TYPE[i][column]; \ +} \ +break; + +psVector *psImageCol(psVector *out, + const psImage *input, + int column) +{ + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + if (input->col0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. col0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->row0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. row0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numCols must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (input->numRows < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numRows must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (column >= (input->numCols + input->col0) ) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified column number is out of range for specified image.\n"); + psFree(out); + return NULL; + } else if ( column < input->col0 && column >= 0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified column number is out of range for specified image.\n"); + psFree(out); + return NULL; + } else if ( column < 0 ) { + column += input->numCols; + if ( column < 0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified column number is out of range for specified image.\n"); + psFree(out); + return NULL; + } + } else { + column -= input->col0; + } + + out = psVectorRecycle(out, input->numRows, input->type.type); + out->n = input->numRows; + + switch (input->type.type) { + VECTOR_STORE_COL_CASE(S8); + VECTOR_STORE_COL_CASE(S16); + VECTOR_STORE_COL_CASE(S32); + VECTOR_STORE_COL_CASE(S64); + VECTOR_STORE_COL_CASE(U8); + VECTOR_STORE_COL_CASE(U16); + VECTOR_STORE_COL_CASE(U32); + VECTOR_STORE_COL_CASE(U64); + VECTOR_STORE_COL_CASE(F32); + VECTOR_STORE_COL_CASE(F64); + VECTOR_STORE_COL_CASE(C32); + VECTOR_STORE_COL_CASE(C64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Specified psImage has invalid type for this function.\n"); + psFree(out); + return NULL; + } + + return out; + +} + +psVector* psImageSlice(psVector* out, + psPixels* coords, + const psImage* input, + const psImage* mask, + psMaskType maskVal, + psRegion region, + psImageCutDirection direction, + const psStats* stats) +{ + psStats* myStats; + psElemType type; + psS32 inRows; + psS32 inCols; + psS32 delta = 1; + psF64* outData; + psS32 row0 = region.y0; + psS32 row1 = region.y1; + psS32 col0 = region.x0; + psS32 col1 = region.x1; + + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + if (input->col0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. col0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->row0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. row0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numCols must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (input->numRows < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numRows must be greater than 0.\n"); + psFree(out); + return NULL; + } + + //If [0,0,0,0] specified, the whole image is to be included + if (row0 == 0 && col0 == 0 && row1 == 0 && col1 == 0) { + row0 = input->row0; + col0 = input->col0; + row1 = input->row0 + input->numRows - 1; + col1 = input->col0 + input->numCols - 1; + } + + //Make sure x0 of region is inside image. If so, set col0 to corresponding index number. + if (col0 >= input->col0 && col0 < (input->col0 + input->numCols) ) { + col0 -= input->col0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x0=%f, is out of range [%d,%d].\n", + region.x0, input->col0, input->col0+input->numCols-1); + psFree(out); + return NULL; + } + //Make sure y0 of region is inside image. If so, set row0 to corresponding index number. + if (row0 >= input->row0 && row0 < (input->row0 + input->numRows) ) { + row0 -= input->row0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y0=%f, is out of range [%d,%d].\n", + region.y0, input->row0, input->row0+input->numRows-1); + psFree(out); + return NULL; + } + + //Make sure x1 of region is valid. If negative, index from tail (if valid). + if (col1 < 0) { + col1 += input->numCols; + if (col1 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x1=%f=%d, is out of range [%d,%d].\n", + region.x1, col1+input->col0, input->col0, input->col0+input->numCols-1); + psFree(out); + return NULL; + } + } else if (col1 >= input->col0 && col1 < (input->col0 + input->numCols) ) { + col1 -= input->col0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x1=%f=%d, is out of range [%d,%d].\n", + region.x1, col1, input->col0, input->col0+input->numCols-1); + psFree(out); + return NULL; + } + //Make sure y1 of region is valid. If negative, index from tail (if valid). + if (row1 < 0) { + row1 += input->numRows; + if (row1 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y1=%f=%d, is out of range [%d,%d].\n", + region.y1, row1+input->row0, input->row0, input->row0+input->numRows-1); + psFree(out); + return NULL; + } + } else if (row1 >= input->row0 && row1 < (input->row0 + input->numRows) ) { + row1 -= input->row0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y1=%f=%d, is out of range [%d,%d].\n", + region.y1, row1, input->row0, input->row0+input->numRows-1); + psFree(out); + return NULL; + } + //Now make sure that the region makes sense. + if (col0 > col1 || row0 > row1) { + if (col0 > col1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. x0=%f=%d is greater than x1=%f=%d.\n", + region.x0, col0, region.x1, col1); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. y0=%f=%d is greater than y1=%f=%d.\n", + region.y0, row0, region.y1, row1); + } + psFree(out); + return NULL; + } else if (col0 == col1 && row0 == row1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. Region contains only 1 pixel.\n"); + psFree(out); + return NULL; + } + + type = input->type.type; + inRows = input->numRows; + inCols = input->numCols; + + if (direction == PS_CUT_X_NEG || direction == PS_CUT_Y_NEG) { + delta = -1; + } + + if (mask != NULL) { + if (inRows != mask->numRows || inCols != mask->numCols) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Input psImage mask size, %dx%d, does not match psImage input size, %dx%d."), + mask->numCols,mask->numRows, + inCols, inRows); + psFree(out); + return NULL; + } + if (mask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,mask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type, %s, is not the supported mask datatype of %s."), + typeStr, PS_TYPE_MASK_NAME); + psFree(out); + return NULL; + } + } + + if (stats == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified statistic can not be NULL.")); + psFree(out); + return NULL; + } + + // verify that the stats struct specifies a single stats operation + psStatsOptions statistic = psStatsSingleOption(stats->options); + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + _("Specified statistic option, %d, is not valid. Must specify one and only one statistic type."),stats->options); + psFree(out); + return NULL; + } + // since stats input is const, I need to + // create a 'scratch' stats struct + myStats = psAlloc(sizeof(psStats)); + *myStats = *stats; + + psS32 numCols = col1-col0; + psS32 numRows = row1-row0; + + if (direction == PS_CUT_X_POS || direction == PS_CUT_X_NEG) { + psVector* imgVec = psVectorAlloc(numRows, type); + psVector* maskVec = NULL; + psMaskType* maskData = NULL; + psPixelCoord* outPosition = NULL; + + // recycle output to make a proper sized/type output structure + // n.b. type is double as that is the type given for all stats is + // psStats. + out = psVectorRecycle(out, numCols, PS_TYPE_F64); + out->n = numCols; + if (coords != NULL) { + coords = psPixelsRealloc(coords, numCols); + coords->n = numCols; + outPosition = coords->data; + } + outData = out->data.F64; + if (delta < 0) { + outData += numCols - 1; + if (outPosition != NULL) { + outPosition += numCols - 1; + } + } + + if (mask != NULL) { + maskVec = psVectorAlloc(numRows, mask->type.type); + } + #define PSIMAGE_CUT_VERTICAL(TYPE) \ + case PS_TYPE_##TYPE: { \ + psMaskType* maskVecData = NULL; \ + for (psS32 c=col0;cdata.TYPE[row0] + c; \ + ps##TYPE *imgVecData = imgVec->data.TYPE; \ + if (maskVec != NULL) { \ + maskVecData = maskVec->data.U8; \ + maskData = (psMaskType* )(mask->data.U8[row0]) + c; \ + } \ + for (psS32 r=row0;rx = c; \ + outPosition->y = row0; \ + outPosition += delta; \ + } \ + outData += delta; \ + } \ + break; \ + } + + switch (type) { + PSIMAGE_CUT_VERTICAL(U8); // Not a requirement + PSIMAGE_CUT_VERTICAL(U16); + PSIMAGE_CUT_VERTICAL(U32); // Not a requirement + PSIMAGE_CUT_VERTICAL(U64); // Not a requirement + PSIMAGE_CUT_VERTICAL(S8); + PSIMAGE_CUT_VERTICAL(S16); // Not a requirement + PSIMAGE_CUT_VERTICAL(S32); // Not a requirement + PSIMAGE_CUT_VERTICAL(S64); // Not a requirement + PSIMAGE_CUT_VERTICAL(F32); + PSIMAGE_CUT_VERTICAL(F64); + PSIMAGE_CUT_VERTICAL(C32); // Not a requirement + PSIMAGE_CUT_VERTICAL(C64); // Not a requirement + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + psFree(out); + out = NULL; + } + } + psFree(imgVec); + psFree(maskVec); + } else if (direction == PS_CUT_Y_POS || direction == PS_CUT_Y_NEG) { + // Cut in Y direction + psVector* imgVec = NULL; + psVector* maskVec = NULL; + psS32 elementSize = PSELEMTYPE_SIZEOF(type); + psPixelCoord* outPosition = NULL; + + // fill in psVector to fake out the statistics functions. + imgVec = psAlloc(sizeof(psVector)); + imgVec->type = input->type; + P_PSVECTOR_SET_NALLOC(imgVec,numCols); + if (mask != NULL) { + maskVec = psAlloc(sizeof(psVector)); + maskVec->type = mask->type; + P_PSVECTOR_SET_NALLOC(maskVec,numCols); + } + // recycle output to make a proper sized/type output structure + // n.b. type is double as that is the type given for all stats in + // psStats. + out = psVectorRecycle(out, numRows, PS_TYPE_F64); + out->n = numRows; + imgVec->n = imgVec->nalloc; + maskVec->n = maskVec->nalloc; + if (coords != NULL) { + coords = psPixelsRealloc(coords, numRows); + coords->n = numRows; + outPosition = coords->data; + } + outData = out->data.F64; + if (delta < 0) { + outData += numRows-1; + if (outPosition != NULL) { + outPosition += numRows-1; + } + } + + for (psS32 r = row0; r < row1; r++) { + // point the vector struct to the + // data to calculate the stats + imgVec->data.U8 = (psPtr )(input->data.U8[r] + col0 * elementSize); + if (maskVec != NULL) { + maskVec->data.U8 = (psPtr )(mask->data.U8[r] + col0 * sizeof(psMaskType)); + } + psVectorStats(myStats, imgVec, NULL, maskVec, maskVal); + *outData = psStatsGetValue(myStats, statistic); + if (outPosition != NULL) { + outPosition->y = r; + outPosition->x = col0; + outPosition += delta; + + } + outData += delta; + } + psFree(imgVec); + psFree(maskVec); + } else { // don't know what the direction flag is + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified slice direction, %d, is invalid."), + direction); + psFree(out); + out = NULL; + } + + psFree(myStats); + + return out; +} + +psVector* psImageCut(psVector* out, + psVector* cutCols, + psVector* cutRows, + const psImage* input, + const psImage* mask, + psMaskType maskVal, + psRegion region, + unsigned int nSamples, + psImageInterpolateMode mode) +{ + + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + if (input->col0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. col0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->row0 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. row0 cannot be negative.\n"); + psFree(out); + return NULL; + } + if (input->numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numCols must be greater than 0.\n"); + psFree(out); + return NULL; + } + if (input->numRows < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImage input is invalid. numRows must be greater than 0.\n"); + psFree(out); + return NULL; + } + psS32 numCols = input->numCols; + psS32 numRows = input->numRows; + + if (nSamples < 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified number of samples, %d, must be greater than 1 to make a line."), + nSamples); + psFree(out); + return NULL; + } + + float col0 = region.x0; + float row0 = region.y0; + float col1 = region.x1; + float row1 = region.y1; + + //If [0,0,0,0] specified, the whole image is to be included + if (row0 == 0 && col0 == 0 && row1 == 0 && col1 == 0) { + row0 = input->row0; + col0 = input->col0; + row1 = input->row0 + input->numRows - 1; + col1 = input->col0 + input->numCols - 1; + } + + //Make sure x0 of region is inside image. If so, set col0 to corresponding index number. + if (col0 >= input->col0 && col0 < (input->col0 + input->numCols) ) { + col0 -= input->col0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x0=%f, is out of range [%d,%d].\n", + region.x0, input->col0, input->col0+input->numCols); + psFree(out); + return NULL; + } + //Make sure y0 of region is inside image. If so, set row0 to corresponding index number. + if (row0 >= input->row0 && row0 < (input->row0 + input->numRows) ) { + row0 -= input->row0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y0=%f, is out of range [%d,%d].\n", + region.y0, input->row0, input->row0+input->numRows); + psFree(out); + return NULL; + } + if (col1 < 0 || row1 < 0 || col0 < 0 || row0 < 0 || col0 >= numCols || col1 >= numCols || + row0 >= numRows || row1 >= numRows) { + psFree(out); + return NULL; + } + float startCol = col0; + float startRow = row0; + float endCol = col1; + float endRow = row1; + + if (mode < PS_INTERPOLATE_FLAT ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified interpolation mode, %d, is unsupported."), + mode); + psFree(out); + return NULL; + } + + if (mask != NULL) { + if (numRows != mask->numRows || numCols != mask->numCols) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Input psImage mask size, %dx%d, does not match psImage input size, %dx%d."), + mask->numCols,mask->numRows, + numCols-1, numRows); + psFree(out); + return NULL; + } + if (mask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,mask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type, %s, is not the supported mask datatype of %s."), + typeStr, PS_TYPE_MASK_NAME); + psFree(out); + return NULL; + } + } + + //resize the vectors for the coordinate output + psF32* cutColsData = NULL; + psF32* cutRowsData = NULL; + if (cutCols != NULL) { + cutCols = psVectorRecycle(cutCols, nSamples, PS_TYPE_F32); + cutColsData = cutCols->data.F32; + } + if (cutRows != NULL) { + cutRows = psVectorRecycle(cutRows, nSamples, PS_TYPE_F32); + cutRowsData = cutRows->data.F32; + } + + out = psVectorRecycle(out, nSamples, input->type.type); + + float dX = (endCol - startCol) / (float)(nSamples-1); + float dY = (endRow - startRow) / (float)(nSamples-1); + + #define LINEAR_CUT_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + ps##TYPE* outData = out->data.TYPE; \ + for (psS32 i = 0; i < nSamples; i++) { \ + float x = startCol + (float)i*dX; \ + float y = startRow + (float)i*dY; \ + /* store off the location of the sample. */ \ + if (cutColsData != NULL) { \ + cutColsData[i] = x; \ + } \ + if (cutRowsData != NULL) { \ + cutRowsData[i] = y; \ + } \ + outData[i] = psImagePixelInterpolate(input,x,y,mask,maskVal,0,mode); \ + } \ + } \ + break; + + + switch (input->type.type) { + LINEAR_CUT_CASE(U8); + LINEAR_CUT_CASE(U16); + LINEAR_CUT_CASE(U32); + LINEAR_CUT_CASE(U64); + LINEAR_CUT_CASE(S8); + LINEAR_CUT_CASE(S16); + LINEAR_CUT_CASE(S32); + LINEAR_CUT_CASE(S64); + LINEAR_CUT_CASE(F32); + LINEAR_CUT_CASE(F64); + LINEAR_CUT_CASE(C32); + LINEAR_CUT_CASE(C64); + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + psFree(out); + out = NULL; + } + } + + return out; +} + +psVector* psImageRadialCut(psVector* out, + const psImage* input, + const psImage* mask, + psMaskType maskVal, + float x, + float y, + const psVector* radii, + const psStats* stats) +{ + /* check the parameters */ + + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(out); + return NULL; + } + psS32 numCols = input->numCols; + psS32 numRows = input->numRows; + + if (mask != NULL) { + if (numRows != mask->numRows || numCols != mask->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Input psImage mask size, %dx%d, does not match psImage input size, %dx%d."), + mask->numCols,mask->numRows, + numCols, numRows); + psFree(out); + return NULL; + } + if (mask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,mask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type, %s, is not the supported mask datatype of %s."), + typeStr, PS_TYPE_MASK_NAME); + psFree(out); + return NULL; + } + } + + // if (x < 0 || x >= numCols || + // y < 0 || y >= numRows) { + if (x < input->col0 || x >= (input->col0 + numCols) || + y < input->row0 || y >= (input->row0 + numRows) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified center, (%g,%g), is outside of the psImage boundaries, [0:%d,0:%d]."), + x, y, + numCols-1, numRows-1); + psFree(out); + return NULL; + } + + if (radii == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified radii vector can not be NULL.")); + psFree(out); + return NULL; + } + + if (radii->n < 2) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Input radii vector size, %ld, can not be less than 2."), + radii->n); + psFree(out); + return NULL; + } + + if (stats == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified statistic can not be NULL.")); + psFree(out); + return NULL; + } + + // verify that the stats struct specifies a single stats operation + psStatsOptions statistic = psStatsSingleOption(stats->options); + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + _("Specified statistic option, %d, is not valid. Must specify one and only one statistic type."), + stats->options); + psFree(out); + return NULL; + } + + /* completed checking the parameters */ + + // size the output vector to proper size. + psS32 numOut = radii->n - 1; + out = psVectorRecycle(out, numOut, PS_TYPE_F64); + psF64* outData = out->data.F64; + + psVector* rSqVec = psVectorCopy(NULL, radii, PS_TYPE_F32); + psF32* rSq = rSqVec->data.F32; + + psS32 startRow = y - rSq[numOut]; + psS32 endRow = y + rSq[numOut]; + psS32 startCol = x - rSq[numOut]; + psS32 endCol = x + rSq[numOut]; + + if (startRow < 0) { + startRow = 0; + } + + if (startCol < 0) { + startCol = 0; + } + + if (endRow >= numRows) { + endRow = numRows - 1; + } + + if (endCol >= numCols) { + endCol = numCols - 1; + } + + // Square the radii data + for (psS32 d = 0; d <= numOut; d++) { + rSq[d] *= rSq[d]; + } + + // create temporary vectors for the data binning step + psVector** buffer = psAlloc(sizeof(psVector*)*numOut); + psVector** bufferMask = psAlloc(sizeof(psVector*)*numOut); + for (psS32 lcv = 0; lcv < numOut; lcv++) { + // n.b. alloc enough for the data by making the vectors slightly larger + // than the area of the region of interest. + buffer[lcv] = psVectorAllocEmpty(1+4*(rSq[lcv+1]-rSq[lcv]), + input->type.type); + + bufferMask[lcv] = NULL; + if (mask != NULL) { + bufferMask[lcv] = psVectorAllocEmpty(1+4*(rSq[lcv+1]-rSq[lcv]), + PS_TYPE_MASK); + } + } + + float dX; + float dY; + float dist; + for (psS32 row=startRow; row <= endRow; row++) { + psF32* inRow = input->data.F32[row]; + psMaskType* maskRow = NULL; + if (mask != NULL) { + maskRow = mask->data.PS_TYPE_MASK_DATA[row]; + } + for (psS32 col=startCol; col <= endCol; col++) { + dX = x - (float)col - 0.5f; + dY = y - (float)row - 0.5f; + dist = dX*dX+dY*dY; + for (psS32 r = 0; r < numOut; r++) { + if (rSq[r] < dist && dist < rSq[r+1]) { + psS32 n = buffer[r]->n; + if (n == buffer[r]->nalloc) { // in case buffers already full, expand + buffer[r] = psVectorRealloc(buffer[r], n*2); + if (bufferMask[r] != NULL) { + bufferMask[r] = psVectorRealloc(bufferMask[r], n*2); + } + } + + buffer[r]->data.F32[n] = inRow[col]; + buffer[r]->n = n+1; + + if (maskRow != NULL) { + bufferMask[r]->data.PS_TYPE_MASK_DATA[n] = maskRow[col]; + bufferMask[r]->n = n+1; + } + + break; + } + } + } + } + + psStats* myStats = psAlloc(sizeof(psStats)); + *myStats = *stats; + + for (psS32 r = 0; r < numOut; r++) { + psVectorStats(myStats,buffer[r], NULL, bufferMask[r],maskVal); + outData[r] = psStatsGetValue(myStats, statistic); + } + + psFree(myStats); + + for (psS32 lcv = 0; lcv < numOut; lcv++) { + psFree(buffer[lcv]); + psFree(bufferMask[lcv]); + } + psFree(buffer); + psFree(bufferMask); + psFree(rSqVec); + return out; +} Index: /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImagePixelExtract.h (revision 12167) @@ -0,0 +1,145 @@ +/* @file psImagePixelExtract.h + * + * @brief Basic image extraction operations + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.10 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSIMAGE_PIXEL_EXTRACT_H +#define PSIMAGE_PIXEL_EXTRACT_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psVector.h" +#include "psStats.h" +#include "psPixels.h" + +/* Cut direction flag. Used with psImageCut function. + */ +typedef enum { + PS_CUT_X_POS, ///< Cut in the x dimension from left to right + PS_CUT_X_NEG, ///< Cut in the x dimension from rigth to left + PS_CUT_Y_POS, ///< Cut in the y dimension from bottom up + PS_CUT_Y_NEG ///< Cut in the y dimension from top down. +} psImageCutDirection; + +/** Extracts a single complete row from the image and returns it to the + * provided vector, allocating it if it is NULL. + * + * @return psVector*: The row data extracted from psImage input + */ +psVector *psImageRow( + psVector *out, ///< specified vector to return + const psImage *input, ///< input image + int row ///< row number to extract +); + +/** Extracts a single complete column from the image and returns it to the + * provided vector, allocating it if it is NULL. + * + * @return psVector*: The column data extracted from psImage input + */ +psVector *psImageCol( + psVector *out, ///< specified vector to return + const psImage *input, ///< input image + int column ///< column number to extract +); + +/** Extract pixels from rectlinear region to a vector (array of floats). + * + * The output vector contains either col1-col0 or row1-row0 elements, based + * on the value of the direction: e.g., if direction is PS_CUT_X_POS, there + * are col1-col0 elements. The region to be sliced is defined by the + * lower-left corner, (col0,row0), and the upper-right corner, (col1,row1). + * Note that the row and column of the upper right-hand corner are NOT + * included in the region. In the event that col1 or row1 are negative, they + * shall be interpreted as being relative to the size of the parent image in + * that dimension. The input region is collapsed in the direction perpendicular + * to that specified by direction, and each element of the output vectors is + * derived from the statistics of the pixels at that direction coordinate. The + * statistic used to derive the output vector value is specified by stats. + * If mask is non-NULL, pixels for which the corresponding mask pixel + * matches maskVal are excluded from operations. If coords is not NULL, the + * calculated coordinates along the slice are returned in this vector. Only + * one of the statistics choices may be specified, otherwise the function + * must return an error. + * + * This function is defined for the following types: psS8, psU16, psF32, psF64. + * + * @return psVector the resulting vector + */ +psVector* psImageSlice( + psVector* out, ///< psVector to recycle, or NULL. + psPixels* coords, + ///< If not NULL, it is populated with the coordinate in the slice dimension + ///< coorsponding to the output vector's value of the same position in the + ///< vector. This vector maybe resized and retyped as appropriate. + const psImage* input, ///< the input image in which to perform the slice + const psImage* mask, ///< the mask for the input image. + psMaskType maskVal, ///< the mask value to apply to the mask + psRegion region, ///< the slice region + psImageCutDirection direction, ///< the slice dimension and direction + const psStats* stats ///< the statistic to perform in slice operation +); + +/** Extract pixels from an image along a line to a vector (array of floats). + * + * The vector (xs,ys) - (xe,ye) forms the basis of the output vector. Pixels + * are considered in a rectangular region of width dw about this vector. The + * input region is collapsed in the perpendicular direction, and each element + * of the output vector represents pixel-sized boxes, where the value is + * derived from the statistics of the pixels interpolated along the + * perpendicular direction. The specific algorithm which must be used is + * described in the PSLib ADD (PSDC-430-006). The statistic used to derive + * the output vector value is specified by stats. Only one of the statistics + * choices may be specified, otherwise the function must return an error. + * This function must be defined for the following types: psS8, psU16, psF32, + * psF64. + * + * @return psVector* resulting vector + */ +psVector* psImageCut( + psVector* out, ///< psVector to recycle, or NULL. + psVector* cutCols, ///< if not NULL, the calculated column values along the slice (output) + psVector* cutRows, ///< if not NULL, the calculated row values along the slice (output) + const psImage* input, ///< the input image in which to perform the cut + const psImage* mask, ///< the mask for the input image. + psMaskType maskVal, ///< the mask value to apply to the mask + psRegion region, ///< the start and end points to cut along + unsigned int nSamples, ///< the number of samples along the cut + psImageInterpolateMode mode ///< the interpolation method to use +); + +/** Extract radial region data to a vector. A vector is constructed where each + * vector elements is derived from the statistics of the pixels which land + * within one of a sequence of radii. The radii are centered on the image + * pixel coordinate x,y, and are defined by the sequence of values in the + * vector radii. The specific algorithm which must be used is described in + * the PSLib ADD (PSDC-430-006). The statistic used to derive the output + * vector value is specified by stats. Only one of the statistics choices + * may be specified, otherwise the function must return an error. This + * function must be defined for the following types: psS8, psU16, psF32, + * psF64. + * + * @return psVector resulting vector + */ +psVector* psImageRadialCut( + psVector* out, ///< psVector to recycle, or NULL. + const psImage* input, ///< the input image in which to perform the cut + const psImage* mask, ///< the mask for the input image. + psMaskType maskVal, ///< the mask value to apply to the mask + float x, ///< the column of the center of the cut circle + float y, ///< the row of the center of the cut circle + const psVector* radii, ///< the radii of the cut circle + const psStats* stats ///< the statistic to perform in operation +); + +/// @} +#endif // #ifndef PSIMAGE_PIXEL_EXTRACT_H Index: /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.c (revision 12167) @@ -0,0 +1,418 @@ +/** @file psImagePixelManip.c + * + * @brief Contains basic image pixel and geometry manipulation operations, as + * specified in the PSLIB SDRS sections "Image Pixel Manipulations" and + * "Image Geometry Manipulations". + * + * @ingroup Image + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.21 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include // for isfinite(), etc. +#include +#include // for memcpy, etc. + +#include "psImagePixelManip.h" + +#include "psError.h" +#include "psImage.h" +#include "psStats.h" +#include "psMemory.h" +#include "psAssert.h" + +#include "psCoord.h" + +int psImageClip(psImage* input, + double min, + double vmin, + double max, + double vmax) +{ + psS32 numClipped = 0; + psU32 numRows; + psU32 numCols; + + if (input == NULL) { + return 0; + } + + if (max < min) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified min value, %g, can not be greater than the specified max value, %g."), + (double)min,(double)max); + return 0; + } + + numRows = input->numRows; + numCols = input->numCols; + + switch (input->type.type) { + + #define psImageClipCase(type) \ + case PS_TYPE_##type: { \ + if (vmin < PS_MIN_##type || vmin > PS_MAX_##type) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g, is outside of psImage type's range (%s: %g to %g)."), \ + "vmin",vmin, PS_TYPE_##type##_NAME, \ + (psF64)PS_MIN_##type,(psF64)PS_MAX_##type); \ + } \ + if (vmax > PS_MAX_##type || vmax < PS_MIN_##type) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g, is outside of psImage type's range (%s: %g to %g)."), \ + "vmax",vmax, PS_TYPE_##type##_NAME, \ + (psF64)PS_MIN_##type,(psF64)PS_MAX_##type); \ + } \ + for (psU32 row = 0;rowdata.type[row]; \ + for (psU32 col = 0; col < numCols; col++) { \ + if ((psF64)inputRow[col] < min) { \ + inputRow[col] = (ps##type)vmin; \ + numClipped++; \ + } else if ((psF64)inputRow[col] > max) { \ + inputRow[col] = (ps##type)vmax; \ + numClipped++; \ + } \ + } \ + } \ + } \ + break; + + #define psImageClipCaseComplex(type,absfcn)\ + case PS_TYPE_##type: { \ + if (vmin < PS_MIN_##type || vmin > PS_MAX_##type) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g, is outside of psImage type's range (%s: %g to %g)."), \ + "vmin",vmin, PS_TYPE_##type##_NAME, \ + (psF64)PS_MIN_##type,(psF64)PS_MAX_##type); \ + } \ + if (vmax > PS_MAX_##type || vmax < PS_MIN_##type) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g, is outside of psImage type's range (%s: %g to %g)."), \ + "vmax",vmax, PS_TYPE_##type##_NAME, \ + (psF64)PS_MIN_##type,(psF64)PS_MAX_##type); \ + } \ + for (psU32 row = 0;rowdata.type[row]; \ + for (psU32 col = 0; col < numCols; col++) { \ + if (absfcn(inputRow[col]) < min) { \ + inputRow[col] = (ps##type)vmin; \ + numClipped++; \ + } else if (absfcn(inputRow[col]) > max) { \ + inputRow[col] = (ps##type)vmax; \ + numClipped++; \ + } \ + } \ + } \ + } \ + break; + + psImageClipCase(S8) + psImageClipCase(S16) + psImageClipCase(S32) // Not a requirement + psImageClipCase(S64) // Not a requirement + psImageClipCase(U8) + psImageClipCase(U16) + psImageClipCase(U32) // Not a requirement + psImageClipCase(U64) // Not a requirement + psImageClipCase(F32) + psImageClipCase(F64) + psImageClipCaseComplex(C32, cabsf) + psImageClipCaseComplex(C64, cabs) + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + } + } + + return numClipped; +} + +int psImageClipNaN(psImage* input, + float value) +{ + psS32 numClipped = 0; + psU32 numRows; + psU32 numCols; + + if (input == NULL) { + return 0; + } + numRows = input->numRows; + numCols = input->numCols; + + switch (input->type.type) { + + #define psImageClipNaNCase(type) \ + case PS_TYPE_##type: \ + for (psU32 row = 0;rowdata.type[row]; \ + for (psU32 col = 0; col < numCols; col++) { \ + if (! isfinite(inputRow[col])) { \ + inputRow[col] = (ps##type)value; \ + numClipped++; \ + } \ + } \ + } \ + break; + + psImageClipNaNCase(F32) + psImageClipNaNCase(F64) + psImageClipNaNCase(C32) + psImageClipNaNCase(C64) + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + } + } + + return numClipped; +} + +int psImageOverlaySection(psImage* image, + const psImage* overlay, + int x0, + int y0, + const char *op) +{ + psU32 imageNumRows; + psU32 imageNumCols; + psU32 overlayNumRows; + psU32 overlayNumCols; + psU32 imageRowLimit; + psU32 imageColLimit; + psElemType type; + psU32 pixelsOverlaid = 0; + + if (image == NULL || overlay == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return pixelsOverlaid; + } + + if (op == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Operation can not be NULL.")); + return pixelsOverlaid; + } + + type = image->type.type; + + if (type != overlay->type.type) { + char* typeStr; + char* typeStrOverlay; + PS_TYPE_NAME(typeStr,type); + PS_TYPE_NAME(typeStrOverlay,overlay->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input overlay psImage type, %s, must match input psImage type, %s."), + typeStrOverlay, typeStr); + return pixelsOverlaid; + } + + imageNumRows = image->numRows; + imageNumCols = image->numCols; + overlayNumRows = overlay->numRows; + overlayNumCols = overlay->numCols; + imageRowLimit = y0 + overlayNumRows; + imageColLimit = x0 + overlayNumCols; + + /* check to see if overlay is within the input image */ + if ( y0 < 0 || + x0 < 0 || + imageRowLimit > imageNumRows || + imageColLimit > imageNumCols) { + + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid or outside input psImage's boundaries, [0:%d,0:%d]."), + x0, imageColLimit, y0, imageRowLimit, + imageNumCols, imageNumRows); + return pixelsOverlaid; + } + + + #define psImageOverlayLoop(DATATYPE,OP) { \ + for (int row=y0;rowdata.DATATYPE[row]; \ + ps##DATATYPE* overlayRow = overlay->data.DATATYPE[row-y0]; \ + for (int col=x0;coltype.type == overlay->type.type) { \ + int numBytes = (imageColLimit - x0) * sizeof(ps##DATATYPE); \ + for (int row = y0; row < imageRowLimit; row++) { \ + ps##DATATYPE *imageRow = image->data.DATATYPE[row]; \ + ps##DATATYPE *overlayRow = overlay->data.DATATYPE[row - y0]; \ + memcpy(&imageRow[x0], overlayRow, numBytes); \ + } \ + pixelsOverlaid += (imageRowLimit - y0) * (imageColLimit - x0); \ + } else { \ + psImageOverlayLoop(DATATYPE,=); \ + } \ + } + + #define psImageOverlayCase(DATATYPE) \ +case PS_TYPE_##DATATYPE: \ + switch (*op) { \ + case '+': \ + psImageOverlayLoop(DATATYPE,+=); \ + break; \ + case '-': \ + psImageOverlayLoop(DATATYPE,-=); \ + break; \ + case '*': \ + psImageOverlayLoop(DATATYPE,*=); \ + break; \ + case '/': \ + psImageOverlayLoop(DATATYPE,/=); \ + break; \ + case '=': \ + psImageOverlaySetLoop(DATATYPE); \ + break; \ + default: \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified operation, '%s', is not supported."), \ + op); \ + return pixelsOverlaid; \ + } \ + break; + + switch (type) { + psImageOverlayCase(U8); + psImageOverlayCase(U16); + psImageOverlayCase(U32); // Not a requirement + psImageOverlayCase(U64); // Not a requirement + psImageOverlayCase(S8); + psImageOverlayCase(S16); + psImageOverlayCase(S32); // Not a requirement + psImageOverlayCase(S64); // Not a requirement + psImageOverlayCase(F32); + psImageOverlayCase(F64); + psImageOverlayCase(C32); + psImageOverlayCase(C64); + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + return pixelsOverlaid; + } + } + + return pixelsOverlaid; +} + +int psImageClipComplexRegion(psImage* input, + double complex min, + double complex vmin, + double complex max, + double complex vmax) +{ + psS32 numClipped = 0; + psU32 numRows; + psU32 numCols; + psF64 realMin = creal(min); + psF64 imagMin = cimag(min); + psF64 realMax = creal(max); + psF64 imagMax = cimag(max); + + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return 0; + } + + if (realMax < realMin) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified real-portion of min value, %g, can not be greater than the real-portion of max value, %g."), + (double)realMin, (double)realMax); + return 0; + } + if (imagMax < imagMin) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified imaginary-portion of min value, %g, can not be greater than the imaginary-portion of max value, %g."), + (double)imagMin, (double)imagMax); + return 0; + } + + numRows = input->numRows; + numCols = input->numCols; + + #define psImageClipComplexRegionCase(type,realfcn,imagfcn) \ +case PS_TYPE_##type: { \ + if (realfcn(vmin) < PS_MIN_##type || imagfcn(vmin) < PS_MIN_##type || \ + realfcn(vmin) > PS_MAX_##type || imagfcn(vmin) > PS_MAX_##type ) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g%+gi, is not the the range of input psImage's valid pixel values (%s), i.e. [%g:%g]."), \ + "vmin", creal(vmin), cimag(vmin), \ + PS_TYPE_##type##_NAME, PS_MIN_##type, PS_MAX_##type); \ + break; \ + } \ + if (realfcn(vmax) > PS_MAX_##type || imagfcn(vmax) > PS_MAX_##type || \ + realfcn(vmax) < PS_MIN_##type || imagfcn(vmax) < PS_MIN_##type ) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified %s value, %g%+gi, is not the the range of input psImage's valid pixel values (%s), i.e. [%g:%g]."), \ + "vmax", creal(vmax), cimag(vmax), \ + PS_TYPE_##type##_NAME, PS_MIN_##type, PS_MAX_##type); \ + break; \ + } \ + for (psU32 row = 0;rowdata.type[row]; \ + for (psU32 col = 0; col < numCols; col++) { \ + if ( (realfcn(inputRow[col]) > realMax) || (imagfcn(inputRow[col]) > imagMax) ) { \ + inputRow[col] = (ps##type)vmax; \ + numClipped++; \ + } else if ( (realfcn(inputRow[col]) < realMin) || (imagfcn(inputRow[col]) < imagMin) ){ \ + inputRow[col] = (ps##type)vmin; \ + numClipped++; \ + } \ + } \ + } \ + } \ + break; + + switch (input->type.type) { + + psImageClipComplexRegionCase(C32, crealf, cimagf) + psImageClipComplexRegionCase(C64, creal, cimag) + + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified psImage type, %s, is not supported."), + typeStr); + } + } + + return numClipped; +} Index: /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImagePixelManip.h (revision 12167) @@ -0,0 +1,89 @@ +/* @file psImagePixelManip.h + * + * @brief Basic image pixel manipulation operations + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.16 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_PIXEL_MANIP_H +#define PS_IMAGE_PIXEL_MANIP_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psCoord.h" +#include "psStats.h" +#include "psPixels.h" + +/** Clip image values outside of range to given values + * + * All pixels with values less than min are set to the value vmin. all pixels + * with values greater than max are set to the value vmax. This function is + * defined for psU8, psU16, psS8, psS16, psF32, psF64, psC32, and psC64. + * + * @return int The number of clipped pixels + */ +int psImageClip( + psImage* input, ///< the image to clip + double min, ///< the minimum image value allowed + double vmin, ///< the value pixels < min are set to + double max, ///< the maximum image value allowed + double vmax ///< the value pixels > max are set to +); + +/** Clip image values outside of a specified complex region + * + * All pixels outside of the rectangular region in complex space formed by + * the min and max input parameters are set to the value vmax (if either + * the real or imaginary portion exceeds the respective max values), or vmin. + * This function is defined for psC32, and psC64 imagery only. + * + * @return int The number of clipped pixels + */ +int psImageClipComplexRegion( + psImage* input, ///< the image to clip + double complex min, ///< the minimum image value allowed + double complex vmin, ///< the value pixels < min are set to + double complex max, ///< the maximum image value allowed + double complex vmax ///< the value pixels > max are set to +); + +/** Clip NaN image pixels to given value. + * + * Pixels with NaN, +Inf, or -Inf values are set to the specified value. This + * function is defined for psF32, psF64, psC32, and psC64. + * + * @return int The number of clipped pixels + */ +int psImageClipNaN( + psImage* input, ///< the image to clip + float value ///< the value to set all NaN/Inf values to +); + +/** Overlay subregion of image with another image + * + * Replace the pixels in the image which correspond to the pixels in OVERLAY + * with values derived from the IMAGE and OVERLAY based on the given operator + * OP. Valid operators are "=" (set image value to OVERLAY value), "+" (add + * OVERLAY value to image value), "-" (subtract OVERLAY from image), "*" + * (multiply OVERLAY times image), "/" (divide image by OVERLAY). This + * function is defined for psU8, psS8, psS16, psF32, psF64, psC32, and psC64. + * + * @return int 0 if success, non-zero if failed. + */ +int psImageOverlaySection( + psImage* image, ///< target image + const psImage* overlay, ///< the overlay image + int x0, ///< the column to start overlay + int y0, ///< the row to start overlay + const char *op ///< the operation to perform for overlay +); + +/// @} +#endif // #ifndef PS_IMAGE_PIXEL_MANIP_H Index: /branches/rel-1-1/psLib/src/imageops/psImageStats.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageStats.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageStats.c (revision 12167) @@ -0,0 +1,649 @@ +/** @file psImageStats.c + * \brief Routines for calculating statistics on images. + * @ingroup ImageStats + * + * This file will hold the prototypes for procedures which calculate + * statistic on images, histograms on images, and fit/evaluate Chebyshev + * polynomials to images. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.105 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:08:17 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include "psMemory.h" +#include "psVector.h" +#include "psTrace.h" +#include "psError.h" +#include "psStats.h" +#include "psImage.h" +#include "psPolynomial.h" +#include "psImageStats.h" +#include "psAssert.h" + +#include "psRegion.h" +#include "psRegionForImage.h" + +/// This routine must determine the various statistics for the image. +/***************************************************************************** +psImageStats(stats, in, mask, maskVal): this routine simply calls the +psVectorStats() routine, which does the actual statistical calculation. In +order to do so, we create dummy psVectors and set their "data" pointer to that +of the input psImages. + +XXX: use static psVectors + +XXX: optimize this. 2k vs 4k, sample mean, takes8 seconds on Gene's machine. +Should take .2. + *****************************************************************************/ +bool psImageStats(psStats* stats, + const psImage* in, + const psImage* mask, + psMaskType maskVal) +{ + psVector *junkData = NULL; + psVector *junkMask = NULL; + + PS_ASSERT_PTR_NON_NULL(stats, false); + PS_ASSERT_INT_NONZERO(stats->options, false); + PS_ASSERT_IMAGE_NON_NULL(in, false) + if (mask != NULL) { + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in, mask, false); + } + + if (in->parent == NULL) { + // stuff the image data into a psVector struct. + junkData = (psVector *) psAlloc(sizeof(psVector)); + junkData->type = in->type; + P_PSVECTOR_SET_NALLOC(junkData,in->numRows * in->numCols); + junkData->n = junkData->nalloc; + junkData->data.U8 = in->data.V[0]; // since psImage data is contiguous... + } else { + // image not necessarily contiguous + int numRows = in->numRows; + int numCols = in->numCols; + int rowSize = numCols * (PSELEMTYPE_SIZEOF(in->type.type)); + + junkData = psVectorAlloc(numRows*numCols, in->type.type); + + psU8* data = junkData->data.U8; + for (int row = 0; row < numRows; row++) { + memcpy(data, in->data.V[row], rowSize); + data += rowSize; + } + } + + if (mask != NULL) { + if (mask->parent == NULL) { + // stuff the mask data into a psVector struct. + junkMask = psAlloc(sizeof(psVector)); + junkMask->type = mask->type; + P_PSVECTOR_SET_NALLOC(junkMask,mask->numRows * mask->numCols); + junkMask->n = junkMask->nalloc; + junkMask->data.U8 = mask->data.V[0]; + } else { + // image not necessarily contiguous + int numRows = mask->numRows; + int numCols = mask->numCols; + int rowSize = numCols * (PSELEMTYPE_SIZEOF(mask->type.type)); + + junkMask = psVectorAlloc(numRows*numCols, mask->type.type); + + psU8* data = junkMask->data.U8; + for (int row = 0; row < numRows; row++) { + memcpy(data, mask->data.V[row], rowSize); + data += rowSize; + } + } + } + + psVectorStats(stats, junkData, NULL, junkMask, maskVal); + + psFree(junkMask); + psFree(junkData); + return true; +} + +/***************************************************************************** +NOTE: We assume that the psHistogram structure out has already been allocated +and initialized. + *****************************************************************************/ +bool psImageHistogram(psHistogram* out, + const psImage* in, + const psImage* mask, + psMaskType maskVal) +{ + PS_ASSERT_PTR_NON_NULL(out, false); + PS_ASSERT_PTR_NON_NULL(in, false); + if (mask != NULL) { + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in, mask, false); + } + psVector* junkData = NULL; + psVector* junkMask = NULL; + + if (in->parent == NULL) { + // stuff the image data into a psVector struct. + junkData = (psVector *) psAlloc(sizeof(psVector)); + junkData->type = in->type; + P_PSVECTOR_SET_NALLOC(junkData,in->numRows * in->numCols); + junkData->n = junkData->nalloc; + junkData->data.U8 = in->data.V[0]; // since psImage data is contiguous... + } else { + // image not necessarily contiguous + int numRows = in->numRows; + int numCols = in->numCols; + int rowSize = numCols * (PSELEMTYPE_SIZEOF(in->type.type)); + + junkData = psVectorAlloc(numRows*numCols, in->type.type); + + psU8* data = junkData->data.U8; + for (int row = 0; row < numRows; row++) { + memcpy(data, in->data.V[row], rowSize); + data += rowSize; + } + } + + if (mask != NULL) { + if (mask->parent == NULL) { + // stuff the mask data into a psVector struct. + junkMask = psAlloc(sizeof(psVector)); + junkMask->type = mask->type; + P_PSVECTOR_SET_NALLOC(junkMask,mask->numRows * mask->numCols); + junkMask->n = junkMask->nalloc; + junkMask->data.U8 = mask->data.V[0]; + } else { + // image not necessarily contiguous + int numRows = mask->numRows; + int numCols = mask->numCols; + int rowSize = numCols * (PSELEMTYPE_SIZEOF(mask->type.type)); + + junkMask = psVectorAlloc(numRows*numCols, mask->type.type); + + psU8* data = junkMask->data.U8; + for (int row = 0; row < numRows; row++) { + memcpy(data, mask->data.V[row], rowSize); + data += rowSize; + } + } + } + + if (!psVectorHistogram(out, junkData, NULL, junkMask, maskVal)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate image histogram.\n"); + psFree(junkMask); + psFree(junkData); + return false; + } + + psFree(junkMask); + psFree(junkData); + + return true; +} + +/***************************************************************************** +calcScaleFactorsEval(n): The Chebyshev polynomials are defined over the +interval [-1.0 : 1.0]. Images typically have sizes of 512x512 or more. In +order to use Chebyshev polynomials, we must scale the coordinates from +0:512 to -1:1. This routine takes as input an integer N and produces as +output a vector of evenly spaced floating point values between -1.0:1.0. + +XXX: Use the p_psNormalizeVector here? + *****************************************************************************/ +static double* calcScaleFactors(psS32 n) +{ + PS_ASSERT_INT_NONNEGATIVE(n, NULL); + psS32 i = 0; + double tmp = 0.0; + double *scalingFactors = (double *)psAlloc(n * sizeof(double)); + + for (i = 0; i < n; i++) { + tmp = (double)(n - i); + tmp = (M_PI * (tmp - 0.5)) / ((double)n); + scalingFactors[i] = cos(tmp); + } + + return (scalingFactors); +} + +/***************************************************************************** +psImageFitPolynomial(): This routine takes as input a 2-D image and produces +as output the coefficients of the Chebyshev polynomials which match that +input image. + Input: + Output: + Internal Data Structures: + chebPolys[i][j] + sums[i][j]: This will contain the sum of + input->data.F32[y][x] * + psPolynomial1DEval( +chebPolys[i], +(float) x) * + psPolynomial1DEval( +chebPolys[j], +(float) y, +); + over all pixels (x,y) in the image. + *****************************************************************************/ +bool psImageFitPolynomial(psPolynomial2D* coeffs, + const psImage* input) +{ + PS_ASSERT_IMAGE_NON_NULL(input, false); + PS_ASSERT_IMAGE_NON_EMPTY(input, false); + if ((input->type.type != PS_TYPE_S8) && + (input->type.type != PS_TYPE_U16) && + (input->type.type != PS_TYPE_F32) && + (input->type.type != PS_TYPE_F64)) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Unallowable image type.\n"); + return false; + } + PS_ASSERT_POLY_NON_NULL(coeffs, false); + PS_ASSERT_POLY_TYPE(coeffs, PS_POLYNOMIAL_CHEB, false); + psS32 x = 0; + psS32 y = 0; + psS32 i = 0; + psS32 j = 0; + double **sums = NULL; + psPolynomial1D* *chebPolys = NULL; + psS32 maxChebyPoly = 0; + double *cScalingFactors = NULL; + double *rScalingFactors = NULL; + + // Create the sums[][] data structure. This + // will hold the LHS of + // equation + // 29 in the ADD: sums[k][l] = SUM { + // image(x,y) * Tk(x) * Tl(y) } + sums = (double **)psAlloc((1 + coeffs->nX) * sizeof(double *)); + for (i = 0; i < (1 + coeffs->nX); i++) { + sums[i] = (double *)psAlloc((1 + coeffs->nY) * sizeof(double)); + } + // We scale the pixel positions to values + // between -1.0 and 1.0 + // rScalingFactors = calcScaleFactors(input->numRows); + // cScalingFactors = calcScaleFactors(input->numCols); + rScalingFactors = calcScaleFactors(input->row0 + input->numRows); + cScalingFactors = calcScaleFactors(input->col0 + input->numCols); + + // Determine how many Chebyshev polynomials + // are needed, then create them. + // XXX: record or verify the poly order/nterm change + maxChebyPoly = coeffs->nX; + if (coeffs->nY > coeffs->nX) { + maxChebyPoly = coeffs->nY; + } + chebPolys = p_psCreateChebyshevPolys(maxChebyPoly + 1); + + // Compute the sums[][] data structure. + for (i = 0; i < (1 + coeffs->nX); i++) { + for (j = 0; j < (1 + coeffs->nY); j++) { + sums[i][j] = 0.0; + // for (x = 0; x < input->numRows; x++) { + // for (y = 0; y < input->numCols; y++) { + for (y = input->row0; y < (input->row0 + input->numRows); y++) { + for (x = input->col0; x < (input->col0 + input->numCols); x++) { + double pixel = 0.0; + if (input->type.type == PS_TYPE_S8) { + pixel = (double) input->data.S8[y][x]; + } else if (input->type.type == PS_TYPE_U16) { + pixel = (double) input->data.U16[y][x]; + } else if (input->type.type == PS_TYPE_F32) { + pixel = (double) input->data.F32[y][x]; + } else if (input->type.type == PS_TYPE_F64) { + pixel = input->data.F64[y][x]; + } + sums[i][j] += pixel * psPolynomial1DEval(chebPolys[i],rScalingFactors[y]) * + psPolynomial1DEval(chebPolys[j], cScalingFactors[x]); + } + } + } + } + + for (i = 0; i < (1 + coeffs->nX); i++) { + for (j = 0; j < (1 + coeffs->nY); j++) { + coeffs->coeff[i][j] = sums[i][j]; + coeffs->coeff[i][j] /= (double)(input->numRows * input->numCols); + + if ((i != 0) && (j != 0)) { + coeffs->coeff[i][j] *= 4.0; + } else if ((i == 0) && (j == 0)) { + coeffs->coeff[i][j] *= 1.0; + } else { + coeffs->coeff[i][j] *= 2.0; + } + } + } + + // Free the Chebyshev polynomials that were + // created in this routine. + for (i = 0; i < maxChebyPoly + 1; i++) { + psFree(chebPolys[i]); + } + psFree(chebPolys); + + // Free some data + for (i = 0; i < (1 + coeffs->nX); i++) { + psFree(sums[i]); + } + psFree(sums); + psFree(cScalingFactors); + psFree(rScalingFactors); + + return true; +} + +/***************************************************************************** +XXX: Use static variables for Chebyshev polynomials and scaling factors. + *****************************************************************************/ +psImage* p_psImageEvalPolynomialCheb(psImage* input, + const psPolynomial2D* coeffs) +{ + PS_ASSERT_POLY_TYPE(coeffs, PS_POLYNOMIAL_CHEB, NULL); + + psPolynomial1D* *chebPolys = NULL; + long maxChebyPoly = 0; + double *cScalingFactors = NULL; + double *rScalingFactors = NULL; + + // We scale the pixel positions to values between -1.0 and 1.0 + // Use static data structures here. + // rScalingFactors = calcScaleFactors(input->numRows); + // cScalingFactors = calcScaleFactors(input->numCols); + rScalingFactors = calcScaleFactors(input->numRows+input->row0); + cScalingFactors = calcScaleFactors(input->numCols+input->col0); + + // Determine how many Chebyshev polynomials + // are needed, then create them. + maxChebyPoly = coeffs->nX; + if (coeffs->nY > coeffs->nX) { + maxChebyPoly = coeffs->nY; + } + + chebPolys = p_psCreateChebyshevPolys(maxChebyPoly + 1); + + for (long y = input->row0; y < (input->row0 + input->numRows); y++) { + for (long x = input->col0; x < (input->col0 + input->numCols); x++) { + double polySum = 0.0; + for (long i = 0; i < (1 + coeffs->nX); i++) { + for (long j = 0; j < (1 + coeffs->nY); j++) { + polySum += + psPolynomial1DEval(chebPolys[i], rScalingFactors[y]) * + psPolynomial1DEval(chebPolys[j], cScalingFactors[x]) * + coeffs->coeff[i][j]; + } + } + + if (input->type.type == PS_TYPE_S8) { + input->data.S8[y][x] = (char) polySum; + } else if (input->type.type == PS_TYPE_U16) { + input->data.U16[y][x] = (short int) polySum; + } else if (input->type.type == PS_TYPE_F32) { + input->data.F32[y][x] = (float) polySum; + } else if (input->type.type == PS_TYPE_F64) { + input->data.F64[y][x] = polySum; + } + } + } + + // Free the Chebyshev polynomials that were + // created in this routine. + // XXX: Use static data structures here. + for (long i = 0; i < maxChebyPoly + 1; i++) { + psFree(chebPolys[i]); + } + psFree(chebPolys); + + psFree(cScalingFactors); + psFree(rScalingFactors); + + return input; +} + +psImage* p_psImageEvalPolynomialOrd(psImage* input, + const psPolynomial2D* coeffs) +{ + PS_ASSERT_POLY_TYPE(coeffs, PS_POLYNOMIAL_ORD, NULL); + + for (int row = 0; row < input->numRows ; row++) { + for (int col = 0; col < input->numCols ; col++) { + if (input->type.type == PS_TYPE_S8) { + input->data.S8[row][col] = (psS8) psPolynomial2DEval(coeffs, + (psF32) (row + input->row0), (psF32) (col + input->col0)); + } else if (input->type.type == PS_TYPE_U16) { + input->data.U16[row][col] = (psS16) psPolynomial2DEval(coeffs, + (psF32) (row + input->row0), (psF32) (col + input->col0)); + } else if (input->type.type == PS_TYPE_F32) { + input->data.F32[row][col] = psPolynomial2DEval(coeffs, + (psF32) (row + input->row0), (psF32) (col + input->col0)); + } else if (input->type.type == PS_TYPE_F64) { + input->data.F64[row][col] = (psF64) psPolynomial2DEval(coeffs, + (psF32) (row + input->row0), (psF32) (col + input->col0)); + } + } + } + + return(input); +} + + +/***************************************************************************** +XXX: I added normal polynomials to this routine. Let IfA know, put it in the +psLib SDR. + *****************************************************************************/ +psImage* psImageEvalPolynomial(psImage* input, + const psPolynomial2D* coeffs) +{ + PS_ASSERT_IMAGE_NON_NULL(input, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(input, NULL); + if ((input->type.type != PS_TYPE_S8) && + (input->type.type != PS_TYPE_U16) && + (input->type.type != PS_TYPE_F32) && + (input->type.type != PS_TYPE_F64)) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Unallowable image type.\n"); + } + PS_ASSERT_POLY_NON_NULL(coeffs, NULL); + + if (coeffs->type == PS_POLYNOMIAL_ORD) { + return(p_psImageEvalPolynomialOrd(input, coeffs)); + } else if (coeffs->type == PS_POLYNOMIAL_CHEB) { + return(p_psImageEvalPolynomialCheb(input, coeffs)); + } else { + psError(PS_ERR_UNKNOWN, false, "Incorrect Polynomial Type.\n"); + } + return(NULL); +} + +// count number of pixels with given mask value +long psImageCountPixelMask (psImage *mask, + psRegion region, + psMaskType value) +{ + long Npixels = 0; + int x0 = 0; + int y0 = 0; + int x1 = 0; + int y1 = 0; + psElemType type; + + // this is not a valid error: a psRegion with ranges outside the valid pixels + // should saturate on the valid pixels, not result in an error (per SDRS) + // if (region.x1 > mask->numCols || region.y1 > mask->numRows) { + // psError(PS_ERR_BAD_PARAMETER_SIZE, true, + // "psRegion input is outside of image boundary\n"); + // return -1; + // } + // if (region.x0 <= 0 || region.x1 <= 0 || region.y0 <= 0 || region.y1 <= 0) { + // region = psRegionForImage(mask, region); + // } + // not a valid error: if region coordinates are out of order, they should be flipped + // if (region.x0 > region.x1 || region.y0 > region.y1) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, + // "Invalid region. Lower boundary greater than upper boundary.\n"); + // return -1; + // } + + // rationalize the region + + /* + if (mask == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return -1; + } + region = psRegionForImage(mask, region); + + if (region.x0 == region.x1 || region.y0 == region.y1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "psRegion input contains 0 pixels\n"); + return -1; + } + */ + PS_ASSERT_IMAGE_NON_NULL(mask, -1); + PS_ASSERT_INT_NONNEGATIVE(mask->col0, -1); + PS_ASSERT_INT_NONNEGATIVE(mask->row0, -1); + PS_ASSERT_INT_POSITIVE(mask->numCols, -1); + PS_ASSERT_INT_POSITIVE(mask->numRows, -1); + + int col0 = (int)(roundf(region.x0)); + int col1 = (int)(roundf(region.x1)); + int row0 = (int)(roundf(region.y0)); + int row1 = (int)(roundf(region.y1)); + //If (0,0,0,0) specified, the whole image is to be used. + if (col0 == 0 && col1 == 0 && row0 == 0 && row1 == 0) { + col0 = mask->col0; + col1 = mask->col0 + mask->numCols; + row0 = mask->row0; + row1 = mask->row0 + mask->numRows; + } + + //Make sure x0 of region is inside image. If so, set col0 to corresponding index number. + if (col0 >= mask->col0 && col0 <= (mask->col0 + mask->numCols) ) { + col0 -= mask->col0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x0=%f, is out of range [%d,%d].\n", + region.x0, mask->col0, mask->col0+mask->numCols); + return -1; + } + //Make sure y0 of region is inside image. If so, set row0 to corresponding index number. + if (row0 >= mask->row0 && row0 <= (mask->row0 + mask->numRows) ) { + row0 -= mask->row0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y0=%f, is out of range [%d,%d].\n", + region.y0, mask->row0, mask->row0+mask->numRows); + return -1; + } + + //Make sure x1 of region is valid. If negative, index from tail (if valid). + if (col1 < 0) { + col1 += mask->numCols; + if (col1 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x1=%f=%d, is out of range [%d,%d].\n", + region.x1, col1+mask->col0, mask->col0, mask->col0+mask->numCols); + return -1; + } + } else if (col1 >= mask->col0 && col1 <= (mask->col0 + mask->numCols) ) { + col1 -= mask->col0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, x1=%f=%d, is out of range [%d,%d].\n", + region.x1, col1, mask->col0, mask->col0+mask->numCols); + return -1; + } + //Make sure y1 of region is valid. If negative, index from tail (if valid). + if (row1 < 0) { + row1 += mask->numRows; + if (row1 < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y1=%f=%d, is out of range [%d,%d].\n", + region.y1, row1+mask->row0, mask->row0, mask->row0+mask->numRows); + return -1; + } + } else if (row1 >= mask->row0 && row1 <= (mask->row0 + mask->numRows) ) { + row1 -= mask->row0; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Specified psRegion parameter, y1=%f=%d, is out of range [%d,%d].\n", + region.y1, row1, mask->row0, mask->row0+mask->numRows); + return -1; + } + //Now make sure that the region makes sense. + if (col0 > col1 || row0 > row1) { + if (col0 > col1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. x0=%f=%d is greater than x1=%f=%d.\n", + region.x0, col0, region.x1, col1); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. y0=%f=%d is greater than y1=%f=%d.\n", + region.y0, row0, region.y1, row1); + } + return -1; + }/* else if (col0 == col1 && row0 == row1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid psRegion specified. Region contains only 1 pixel.\n"); + return -1; + } + */ + x0 = col0; + x1 = col1; + y0 = row0; + y1 = row1; + + type = mask->type.type; + if (type != PS_TYPE_MASK) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "psImage type does not match the specified psMaskType!\n"); + return -1; + } + + switch (type) { + case PS_TYPE_U8: + case PS_TYPE_U16: + for (long j = y0; j < y1; j++) { + for (long i = x0; i < x1; i++) { + if (mask->data.PS_TYPE_MASK_DATA[j][i] & value) { + Npixels ++; + } + } + } + break; + case PS_TYPE_S8: + case PS_TYPE_S16: + case PS_TYPE_S32: + case PS_TYPE_S64: + case PS_TYPE_U32: + case PS_TYPE_U64: + case PS_TYPE_F32: + case PS_TYPE_F64: + case PS_TYPE_C32: + case PS_TYPE_C64: + default: + // XXX this should include the mask type (as a string) + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psImage mask type is not a supported mask datatype")); + + return -1; + } + return (Npixels); + + +} + Index: /branches/rel-1-1/psLib/src/imageops/psImageStats.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageStats.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageStats.h (revision 12167) @@ -0,0 +1,103 @@ +/* @file psImageStats.h + * + * @brief Routines for calculating statistics on images. + * + * This file will hold the prototypes for procedures which calculate + * statistic on images, histograms on images, and fit/evaluate Chebyshev + * polynomials to images. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.31 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:01:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_STATS_H +#define PS_IMAGE_STATS_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psType.h" +#include "psVector.h" +#include "psImage.h" +#include "psStats.h" +#include "psHistogram.h" +#include "psPolynomial.h" +#include "psRegion.h" + +/** This routine must determine the various statistics for the image. + * + * Determine statistics for image (or subimage). The statistics to be + * determined are specified by stats. The mask allows pixels to be excluded + * if their corresponding mask pixel value matches the value of maskVal. + * This function must be defined for the following types: psS8, psU16, psF32, + * psF64. + * + * @return bool Successful operation? + */ +bool psImageStats( + psStats* stats, ///< defines statistics to be calculated + const psImage* in, ///< image (or subimage) to calculate stats + const psImage* mask, ///< mask data for image (NULL ok) + psMaskType maskVal ///< mask value for mask +); + +/** Construct a histogram from an image (or subimage). + * + * The histogram to generate is specified by psHistogram hist (see section + * 4.3.2 in SDRS). This function must be defined for the following types: + * psS8, psU16, psF32, psF64. + * + * @return bool Successful operation? + */ +bool psImageHistogram( + psHistogram* out, ///< input histogram description & target + const psImage* in, ///< Image data to be histogramed. + const psImage* mask, ///< mask data for image (NULL ok) + psMaskType maskVal ///< mask Mask for mask +); + +/** Fit a 2-D polynomial surface to an image. + * + * The input structure coeffs contains the desired order and terms of + * interest. This function must be defined for the following types: psS8, + * psU16, psF32, psF64. + * + * @return bool Successful operation? + * + */ +bool psImageFitPolynomial( + psPolynomial2D* coeffs, ///< coefficient structure carries in desired terms & target + const psImage* input ///< input image +); + +/** Evaluate a 2-D polynomial surface for the image pixels. + * + * Given the input polynomial coefficients, set the image pixel values on the + * basis of the polynomial function. This function must be defined for the + * following types: psS8, psU16, psF32, psF64. + * + * @return psImage* the resulting image + */ +psImage* psImageEvalPolynomial( + psImage* input, ///< input image + const psPolynomial2D* coeffs ///< coefficient structure carries in desired terms +); + +/** Returns the number of pixels in the image region which satisfy any of the mask bits. + * + * An error (eg, invalid image, invalid region) results in a return value of -1. + * The vector must be U8. + * + * @return long: the number of pixels counted + */ +long psImageCountPixelMask( + psImage *mask, ///< input image to count + psRegion region, ///< input region of image + psMaskType value ///< the mask value to satisfy +); + +/// @} +#endif // #ifndef PS_IMAGE_STATS_H Index: /branches/rel-1-1/psLib/src/imageops/psImageStructManip.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageStructManip.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageStructManip.c (revision 12167) @@ -0,0 +1,375 @@ +/** @file psImageStructManip.c + * + * @brief Contains basic image structure manipulations, as specified in the + * PSLIB SDRS sections "Image Structure Manipulation". + * + * @ingroup Image + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psMemory.h" +#include "psImageStructManip.h" +#include "psError.h" + + + +static psImage* imageSubset(psImage* out, + psImage* image, + psS32 col0, + psS32 row0, + psS32 col1, + psS32 row1) +{ + psU32 elementSize; // size of image element in bytes + psS32 inputColOffset; // offset in bytes to first subset pixel in input row + + if (image == NULL || image->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return NULL; + } + + if ( col0 < image->col0 || row0 < image->row0 ) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, + // _("Specified subset range, [%d:%d,%d:%d], is invalid or outside input psImage's boundaries, [0:%d,0:%d].")); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid or outside input psImage's boundaries, [0:%d,0:%d]."), + col0, col1-1, row0, row1-1, + image->numCols-1, image->numRows-1); + return NULL; + } + + if (image->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("The input psImage must have a PS_DIMEN_IMAGE dimension type.")); + return NULL; + } + + if (col1 < 1) { + col1 = image->col0 + image->numCols + col1; + } + if (row1 < 1) { + row1 = image->row0 + image->numRows + row1; + } + + if ( col1 <= col0 || + row1 <= row0 || + col0 >= image->col0 + image->numCols || + row0 >= image->row0 + image->numRows || + col1 > image->col0 + image->numCols || + row1 > image->row0 + image->numRows ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid or outside input psImage's boundaries, [0:%d,0:%d]."), + col0, col1-1, row0, row1-1, + image->numCols-1, image->numRows-1); + return NULL; + } + + + + psS32 numRows = row1-row0; + psS32 numCols = col1-col0; + + elementSize = PSELEMTYPE_SIZEOF(image->type.type); + + if (image->parent != NULL) { // if this is a child, we need to start working with parent. + // XXX EAM : we now treat the region as parent coordinates + // col0 += image->col0; + // col1 += image->col0; + // row0 += image->row0; + // row1 += image->row0; + image = (psImage*)image->parent; + } + + // increment the raw data buffer before freeing anything in the 'out' + psPtr rawData = psMemIncrRefCounter(image->p_rawDataBuffer); + + if (out != NULL) { + // if a child, need to orphan (disassociate from parent) first + if (out->parent != NULL) { + psArrayRemoveData(out->parent->children,psMemIncrRefCounter(out)); + // remove from parent's knowledge without triggering a free + out->parent = NULL; // break link to parent + } + + psFree(out->p_rawDataBuffer); // free the previous data reference + } else { + out = psAlloc(sizeof(psImage)); + out->data.V = NULL; + } + + out->data.V = psRealloc(out->data.V,sizeof(psPtr)*numRows); // resize row pointer array + P_PSIMAGE_SET_TYPE(out, image->type); + P_PSIMAGE_SET_NUMCOLS(out, numCols); + P_PSIMAGE_SET_NUMROWS(out, numRows); + + out->row0 = row0; + out->col0 = col0; + out->parent = image; + out->children = NULL; + out->p_rawDataBuffer = rawData; + + // set the new psImage's deallocator to the same as the input image + psMemSetDeallocator(out,psMemGetDeallocator(image)); + + inputColOffset = elementSize * col0; + for (psS32 row = 0; row < numRows; row++) { + out->data.V[row] = image->data.U8[row0 + row] + inputColOffset; + } + + // add output image as a child of the input image. + image->children = psArrayAdd(image->children,16,out); + psMemDecrRefCounter(out); // don't count the reference held by parent as a true reference + + return (out); +} + +psImage* psImageSubset(psImage* image, + psRegion region) +{ + return imageSubset(NULL,image,region.x0, region.y0, + region.x1, region.y1); +} + +psImage* psImageCopy(psImage* output, + const psImage* input, + psElemType type) +{ + psElemType inDatatype; + psS32 elementSize; + psS32 elements; + psS32 numRows; + psS32 numCols; + + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + psFree(output); + return NULL; + } + + if (input == output) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified input and output psImage can not reference the same psImage.")); + psFree(output); + return NULL; + } + + if (input->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("The input psImage must have a PS_DIMEN_IMAGE dimension type.")); + psFree(output); + return NULL; + } + + inDatatype = input->type.type; + numRows = input->numRows; + numCols = input->numCols; + elements = numRows * numCols; + elementSize = PSELEMTYPE_SIZEOF(inDatatype); + + output = psImageRecycle(output, numCols, numRows, type); + output->col0 = input->col0; + output->row0 = input->row0; + + // cover the trival case of copy of the same + // datatype. + if (type == inDatatype) { + for (psS32 row=0;rowdata.V[row], input->data.V[row], elementSize * numCols); + } + return output; + } + + #define PSIMAGE_ELEMENT_COPY(IN,INTYPE,OUT,OUTTYPE,ELEMENTS) { \ + ps##INTYPE *in; \ + ps##OUTTYPE *out; \ + for(psS32 row=0;rowdata.INTYPE[row]; \ + out = OUT->data.OUTTYPE[row]; \ + for (psS32 col=0;coldata.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return NULL; + } + + if (image->parent != NULL) { + return imageSubset(image, + (psImage*)image->parent, + region.x0+image->col0, + region.y0+image->row0, + region.x1+image->col0, + region.y1+image->row0); + } + + int col0 = region.x0; + int row0 = region.y0; + int col1 = region.x1; + int row1 = region.y1; + + if (col1 < 1) { + col1 += image->numCols; + } + + if (row1 < 1) { + row1 += image->numRows; + } + + if ( col0 < 0 || + row0 < 0 || + col1 > image->numCols || + row1 > image->numRows || + col0 >= col1 || + row0 >= row1 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid or outside input psImage's boundaries, [0:%d,0:%d]."), + col0, col1-1, row0, row1-1, + image->numCols-1, image->numRows-1); + psFree(image); + return NULL; + } + + psImageFreeChildren(image); + + psU32 elementSize = PSELEMTYPE_SIZEOF(image->type.type); + psU32 numCols = col1-col0; + psU32 numRows = row1-row0; + psU32 rowSize = elementSize*numCols; + psU32 colOffset = elementSize * col0; + psU8* imageData = image->p_rawDataBuffer; + for (psS32 row = row0; row < row1; row++) { + memmove(imageData,image->data.U8[row] + colOffset,rowSize); + imageData += rowSize; + } + + P_PSIMAGE_SET_NUMCOLS(image, numCols); + P_PSIMAGE_SET_NUMROWS(image, numRows); + + // XXX: should I really resize the buffers? + image->data.V = psRealloc(image->data.V,sizeof(psPtr)*numRows); + image->p_rawDataBuffer = psRealloc(image->p_rawDataBuffer,rowSize*numRows); + + image->data.V[0] = image->p_rawDataBuffer; + for (psS32 r = 1; r < numRows; r++) { + image->data.U8[r] = image->data.U8[r-1] + rowSize; + } + + return (image); +} + Index: /branches/rel-1-1/psLib/src/imageops/psImageStructManip.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageStructManip.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageStructManip.h (revision 12167) @@ -0,0 +1,77 @@ +/** @file psImageStructManip.h +* +* @brief basic image structure manipulation operations +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-23 22:47:23 $ +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PSIMAGE_STRUCT_MANIP_H +#define PSIMAGE_STRUCT_MANIP_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" +#include "psRegion.h" + +/** Create a subimage of the specified area. + * + * Define a subimage of the specified area of the given image. This function must raise an + * error if the requested subset area lies outside of the parent image and return NULL. The + * argument image is the parent image, region.x0, region.y0 specify the starting pixel of the + * subraster, and region.x1,region.y1 specify the extent of the desired subraster. Note that + * the row and column of this upper right-hand corner NOT included in the region. In the event + * that x1 or y1 are negative, they shall be interpreted as being relative to the size of the + * parent image in that dimension. The entire subraster must be contained within the raster of + * the parent image. Note that the refCounter for the parent should be incremented. This + * function must be defined for the following types: psU8, psU16, psS8, psS16, psF32, psF64, + * psC32, psC64. + * + * @return psImage* : Pointer to psImage. + * + */ +psImage* psImageSubset( + psImage* image, ///< Parent image. + psRegion region ///< region of subimage +); + +/** Makes a copy of a psImage + * + * @return psImage* Copy of the input psImage. This may not be equal to the + * output parameter + * + */ +psImage* psImageCopy( + psImage* output, ///< if not NULL, a psImage that could be recycled. + const psImage* input, ///< the psImage to copy + psElemType type ///< the desired datatype of the returned copy +); + +/** Trim an image + * + * Trim the specified image in-place, which involves shuffling the pixels around in memory. + * The pixels in the region [col0:col1,row0:row1] shall consist the output image. The column + * col1 and row row1 are NOT included in the range. In the event that x1 or y1 are + * non-positive, they shall be interpreted as being relative to the size of the parent image + * in that dimension. + * + * If the entire specified subimage is not contained within the parent image, an error results + * and the return value will be NULL. + * + * N.B. If the input psImage is a child of another psImage, no pixel data will be trimmed, + * rather it equivalent to calling psImageSubset. If the input psImage is, however, a parent + * psImage, any children will be obliterated, i.e., freed from memory. + * + * @return psImage* trimmed image result + */ +psImage* psImageTrim( + psImage* image, ///< image to trim + psRegion region ///< trim region +); + +/// @} +#endif // #ifndef PSIMAGE_STRUCT_MANIP_H Index: /branches/rel-1-1/psLib/src/imageops/psImageUnbin.c =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageUnbin.c (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageUnbin.c (revision 12167) @@ -0,0 +1,220 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psError.h" +#include "psImage.h" +#include "psAssert.h" +#include "psImageUnbin.h" + +// interpolate from model to background (~bresenham linear interpolation) +// DX, DY are the binning factor +// dx, dy is the distance is high-res pixels to the 0,0 corner of the first +// binned pixel. +// XXX check that this is still consistent with psphotImageMedian... +psImage *psImageUnbin(psImage *out, const psImage *in, int DX, int DY, int dx, int dy) +{ + PS_ASSERT_IMAGE_NON_NULL(in, NULL); + PS_ASSERT_IMAGE_NON_NULL(out, NULL); + PS_ASSERT_INT_POSITIVE(DX, NULL); + PS_ASSERT_INT_POSITIVE(DY, NULL); + PS_ASSERT_INT_LESS_THAN_OR_EQUAL(dx, DX, NULL); + PS_ASSERT_INT_LESS_THAN_OR_EQUAL(dy, DY, NULL); + + long nx = in->numCols; + long ny = in->numRows; + long Nx = out->numCols; + long Ny = out->numRows; + + psF32 **vIn = in->data.F32; + psF32 **vOut = out->data.F32; + + // loop over all input pixels excluding the last + for (int Iy = 0; Iy < ny-1; Iy ++) { + for (int Ix = 0; Ix < nx-1; Ix ++) { + + float V00 = vIn[Iy+0][Ix+0]; + float V01 = vIn[Iy+0][Ix+1]; + float V10 = vIn[Iy+1][Ix+0]; + float V11 = vIn[Iy+1][Ix+1]; + + // a single binned pixel quad + // (Xs,Ys) : (Xe,Ye) : binned pixel centers in unbinned coords + // corresponding to (Ix,Iy), (Ix+1,Iy+1) + int Xs = PS_MAX (0, PS_MIN (Nx, (Ix + 0.5)*DX - dx)); + int Ys = PS_MAX (0, PS_MIN (Ny, (Iy + 0.5)*DY - dy)); + int Xe = PS_MAX (0, PS_MIN (Nx, Xs + DX)); + int Ye = PS_MAX (0, PS_MIN (Ny, Ys + DY)); + + for (int iy = Ys; (iy < Ye) && (iy < Ny); iy++) { + float Vxs = (V10 - V00)*(iy - Ys) / DY + V00; + float Vxe = (V11 - V01)*(iy - Ys) / DY + V01; + float dV = (Vxe - Vxs) / DX; + float V = Vxs; + for (int ix = Xs; (ix < Xe) && (ix < Nx); ix++) { + vOut[iy][ix] = V; + //assert (fabs(V - psImageUnbinPixel(ix, iy, in, DX, DY, dx, dy)) < 1e-5*fabs(V)); + V += dV; + } + } + } + } + + // side pixels + int Xs = PS_MAX (0, PS_MIN (Nx, ( 0 + 0.5)*DX - dx)); + int Xe = PS_MAX (0, PS_MIN (Nx, (nx - 0.5)*DX - dx)); + for (int Iy = 0; Iy < ny - 1; Iy++) { + + int Ys = PS_MAX (0, PS_MIN (Ny, (Iy + 0.5)*DY - dy)); + int Ye = PS_MAX (0, PS_MIN (Ny, Ys + DY)); + + // leading edge + float V0 = vIn[Iy+0][0]; + float V1 = vIn[Iy+1][0]; + float dV = (V1 - V0) / DY; + float V = V0; + for (int iy = Ys; (iy < Ye) && (iy < Ny); iy++) { + for (int ix = 0; ix < Xs; ix++) { + vOut[iy][ix] = V; + } + V += dV; + } + + // trailing edge + V0 = vIn[Iy+0][nx-1]; + V1 = vIn[Iy+1][nx-1]; + dV = (V1 - V0) / DY; + V = V0; + for (int iy = Ys; (iy < Ye) && (iy < Ny); iy++) { + for (int ix = Xe; ix < Nx; ix++) { + vOut[iy][ix] = V; + } + V += dV; + } + } + + // top and bottom pixels + int Ys = PS_MAX (0, PS_MIN (Ny, ( 0 + 0.5)*DY - dy)); + int Ye = PS_MAX (0, PS_MIN (Ny, (ny - 0.5)*DY - dy)); + for (int Ix = 0; Ix < nx - 1; Ix++) { + + int Xs = PS_MAX (0, PS_MIN (Nx, (Ix + 0.5)*DX - dx)); + int Xe = PS_MAX (0, PS_MIN (Nx, Xs + DX)); + + // top edge + float V0 = vIn[0][Ix+0]; + float V1 = vIn[0][Ix+1]; + float dV = (V1 - V0) / DX; + for (int iy = 0; iy < Ys; iy++) { + float V = V0; + for (int ix = Xs; (ix < Xe) && (ix < Nx); ix++) { + vOut[iy][ix] = V; + V += dV; + } + } + + // bottom edge + V0 = vIn[ny-1][Ix+0]; + V1 = vIn[ny-1][Ix+1]; + dV = (V1 - V0) / DX; + for (int iy = Ye; iy < Ny; iy++) { + float V = V0; + for (int ix = Xs; (ix < Xe) && (ix < Nx); ix++) { + vOut[iy][ix] = V; + V += dV; + } + } + } + // return out; + + // the four corners + { + float V; + // center of last pixel + int Xs = PS_MAX (0, PS_MIN (Nx, ( 0 + 0.5)*DX - dx)); + int Xe = PS_MAX (0, PS_MIN (Nx, (nx - 0.5)*DX - dx)); + int Ys = PS_MAX (0, PS_MIN (Ny, ( 0 + 0.5)*DY - dy)); + int Ye = PS_MAX (0, PS_MIN (Ny, (ny - 0.5)*DY - dy)); + + // 0,0 + V = vIn[0][0]; + for (int iy = 0; iy < Ys; iy++) + { + for (int ix = 0; ix < Xs; ix++) { + vOut[iy][ix] = V; + } + } + // Nx,0 + V = vIn[0][nx-1]; + for (int iy = 0; iy < Ys; iy++) + { + for (int ix = Xe; ix < Nx; ix++) { + vOut[iy][ix] = V; + } + } + // 0,Ny + V = vIn[ny-1][0]; + for (int iy = Ye; iy < Ny; iy++) + { + for (int ix = 0; ix < Xs; ix++) { + vOut[iy][ix] = V; + } + } + // Nx,Ny + V = vIn[ny-1][nx-1]; + for (int iy = Ye; iy < Ny; iy++) + { + for (int ix = Xe; ix < Nx; ix++) { + vOut[iy][ix] = V; + } + } + } + + return out; +} + +/************************************************************************************************************/ +/* + * Get the value of a single unbinned pixel from the binned representation + * + * N.b. This code only works for the central part of the image; the edge + * cases should be added + */ +double psImageUnbinPixel(const int ix, const int iy, // desired Unbinned point + const psImage *in, // binned image + const int DX, const int DY, //!< Scaling factors in x and y + const int dx, const int dy) //!< Overhang +{ + PS_ASSERT_IMAGE_NON_NULL(in, NAN); + assert (in->type.type == PS_TYPE_F32); + PS_ASSERT_INT_POSITIVE(DX, NAN); + PS_ASSERT_INT_POSITIVE(DY, NAN); + PS_ASSERT_INT_LESS_THAN_OR_EQUAL(dx, DX, NAN); + PS_ASSERT_INT_LESS_THAN_OR_EQUAL(dy, DY, NAN); + /* + * Find which binned pixel we're in + */ + const int Xs = (ix + dx)/DX; // index of binned pixel + const int Ys = (iy + dy)/DY; + if (Xs < 0 || Xs >= in->numCols || Ys < 0 || Ys >= in->numRows) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Point (%d,%d) lies outside binned image", ix, iy); + return NAN; + } + const int Xe = PS_MIN (Xs + 1, in->numCols - 1); + const int Ye = PS_MIN (Ys + 1, in->numRows - 1); + + double V00 = in->data.F32[Ys][Xs]; + double V01 = in->data.F32[Ys][Xe]; + double V10 = in->data.F32[Ye][Xs]; + double V11 = in->data.F32[Ye][Xe]; + + const int xs = Xs*DX - dx; // centre of bottom left corner of binned pixel + const int ys = Ys*DY - dy; // (i.e. [Xs][Ys]) in unbinned coordinates + + const double Vxs = (V10 - V00)*(iy - ys)/DY + V00; + const double Vxe = (V11 - V01)*(iy - ys)/DY + V01; + + return Vxs + (Vxe - Vxs)*(ix - xs)/DX; // value at [iy][ix] +} Index: /branches/rel-1-1/psLib/src/imageops/psImageUnbin.h =================================================================== --- /branches/rel-1-1/psLib/src/imageops/psImageUnbin.h (revision 12167) +++ /branches/rel-1-1/psLib/src/imageops/psImageUnbin.h (revision 12167) @@ -0,0 +1,34 @@ +/** @file psImageUnbin.h + * + * @brief Functions to unbin images + * + * @author EAM, IfA + * @author Robert DeSonia, MHPCC + * + * $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_UNBIN_H +#define PS_IMAGE_UNBIN_H + +/// @addtogroup ImageOps Image Operations +/// @{ + +#include "psImage.h" + +// This needs to be considered more carefully +psImage *psImageUnbin (psImage *out, //!< Output image + const psImage *in, //!< Input image + int DX, int DY, //!< Scaling factors in x and y + int dx, int dy //!< Overhang + ); +double psImageUnbinPixel(const int ix, const int iy, //!< desired Unbinned point + const psImage *in, //!< binned image + const int DX, const int DY, //!< Scaling factors in x and y + const int dx, const int dy //!< Overhang + ); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/jpeg/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/jpeg/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/jpeg/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/jpeg/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/jpeg/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/jpeg/Makefile.am (revision 12167) @@ -0,0 +1,12 @@ +#Makefile for image jpeg functions of psLib +# +noinst_LTLIBRARIES = libpslibjpeg.la + +libpslibjpeg_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(JPEG_CFLAGS) +libpslibjpeg_la_SOURCES = \ + psImageJpeg.c + +pkginclude_HEADERS = \ + psImageJpeg.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.c =================================================================== --- /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.c (revision 12167) +++ /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.c (revision 12167) @@ -0,0 +1,220 @@ +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#include +#include // for strcasecmp +#include + +#include "psMemory.h" +#include "psImage.h" +#include "psVector.h" +#include "psError.h" +#include "psAssert.h" +#include "psImageJpeg.h" + +#ifdef HAVE_STDLIB_H +// jpeglib.h includes jconfig.h which is full of autoconf generated HAVE_* +// defines. This is a hack to work around CPP redefinition errors. Arrrrrgh!!! +// -JH +# undef HAVE_STDLIB_H +# include +#endif // ifdef HAVE_STDLIB_H + +static void imageJpegColormapFree(psImageJpegColormap *map) +{ + + if (!map) { + return; + } + + psFree(map->red); + psFree(map->green); + psFree(map->blue); + return; +} + +psImageJpegColormap *psImageJpegColormapAlloc () +{ + psImageJpegColormap *map = psAlloc(sizeof(psImageJpegColormap)); + psMemSetDeallocator(map, (psFreeFunc)imageJpegColormapFree); + + map->red = psVectorAlloc(256, PS_TYPE_U8); + map->blue = psVectorAlloc(256, PS_TYPE_U8); + map->green = psVectorAlloc(256, PS_TYPE_U8); + + return map; +} + +psImageJpegColormap *psImageJpegColormapSet(psImageJpegColormap *map, const char *name) +{ + + if (!map) { + map = psImageJpegColormapAlloc (); + } + + /* grayscale */ + if ((!strcasecmp (name, "grayscale")) || (!strcasecmp (name, "greyscale"))) { + for (int i = 0; i < map->red->n; i++) { + map->red->data.U8[i] = PS_JPEG_RANGELIM(i); + map->green->data.U8[i] = PS_JPEG_RANGELIM(i); + map->blue->data.U8[i] = PS_JPEG_RANGELIM(i); + } + return map; + } + + /* -grayscale */ + if ((!strcasecmp (name, "-grayscale")) || (!strcasecmp (name, "-greyscale"))) { + for (int i = 0; i < map->red->n; i++) { + map->red->data.U8[i] = PS_JPEG_RANGELIM(256 - i); + map->green->data.U8[i] = PS_JPEG_RANGELIM(256 - i); + map->blue->data.U8[i] = PS_JPEG_RANGELIM(256 - i); + } + return map; + } + + /* rainbow */ + if (!strcasecmp (name, "rainbow")) { + int I1 = 0.25*map->red->n; + int I2 = 0.50*map->red->n; + int I3 = 0.75*map->red->n; + for (int i = 0; i < I1; i++) { + map->red->data.U8[i] = 0; + map->green->data.U8[i] = 0; + map->blue->data.U8[i] = PS_JPEG_RANGELIM(4*i); + } + for (int i = I1; i < I2; i++) { + map->red->data.U8[i] = PS_JPEG_RANGELIM(4*(i - I1)); + map->green->data.U8[i] = 0; + map->blue->data.U8[i] = PS_JPEG_RANGELIM(4*(I2 - i)); + } + for (int i = I2; i < I3; i++) { + map->red->data.U8[i] = 255; + map->green->data.U8[i] = 4*(i - I2); + map->blue->data.U8[i] = 0; + } + for (int i = I3; i < map->red->n; i++) { + map->red->data.U8[i] = 255; + map->green->data.U8[i] = 255; + map->blue->data.U8[i] = PS_JPEG_RANGELIM(4*(i - I3)); + } + return map; + } + + /* heat */ + if (!strcasecmp (name, "heat")) { + int I1 = 0.25*map->red->n; + int I2 = 0.50*map->red->n; + int I3 = 0.75*map->red->n; + for (int i = 0; i < I1; i++) { + map->red->data.U8[i] = PS_JPEG_RANGELIM(2*i); + map->green->data.U8[i] = 0; + map->blue->data.U8[i] = 0; + } + for (int i = I1; i < I2; i++) { + map->red->data.U8[i] = PS_JPEG_RANGELIM(2*i); + map->green->data.U8[i] = PS_JPEG_RANGELIM(2*(i - I1)); + map->blue->data.U8[i] = 0; + } + for (int i = I2; i < I3; i++) { + map->red->data.U8[i] = 255; + map->green->data.U8[i] = PS_JPEG_RANGELIM(2*(i - I1)); + map->blue->data.U8[i] = PS_JPEG_RANGELIM(2*(i - I2)); + } + for (int i = I3; i < map->red->n; i++) { + map->red->data.U8[i] = 255; + map->green->data.U8[i] = 255; + map->blue->data.U8[i] = PS_JPEG_RANGELIM(2*(i - I2)); + } + return map; + } + + // invalid colormap: warn user + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Invalid colormap name: %s --- using greyscale\n", name); + return psImageJpegColormapSet (map, "greyscale"); +} + +bool psImageJpeg(const psImageJpegColormap *map, const psImage *image, const char *filename, + float min, float max) +{ + PS_ASSERT_PTR_NON_NULL(map, false); + PS_ASSERT_IMAGE_NON_NULL(image, false); + PS_ASSERT_VECTOR_NON_NULL(map->red, false); + PS_ASSERT_VECTOR_NON_NULL(map->green, false); + PS_ASSERT_VECTOR_NON_NULL(map->blue, false); + PS_ASSERT_PTR_NON_NULL(filename, false); + PS_ASSERT_INT_POSITIVE(strlen(filename), false); + PS_ASSERT_FLOAT_REAL(min, false); + PS_ASSERT_FLOAT_REAL(max, false); + + float zero, scale; + struct jpeg_compress_struct cinfo; + struct jpeg_error_mgr jerr; + + long pixel; + JSAMPLE *jpegLine; // Points to data for current line + JSAMPROW jpegLineList[1]; // pointer to JSAMPLE row[s] + JSAMPLE *outPix; + + /* JPEG init calls */ + cinfo.err = jpeg_std_error (&jerr); + jpeg_create_compress (&cinfo); + + /* open file, prep for jpeg */ + FILE *f = fopen(filename, "w"); + if (!f) { + psError(PS_ERR_IO, true, "failed to open %s for output\n", filename); + return false; + } + jpeg_stdio_dest(&cinfo, f); + + /* set up color jpeg buffers */ + int quality = 75; + cinfo.image_width = image->numCols; // image width and height, in pixels + cinfo.image_height = image->numRows; + cinfo.input_components = 3; + cinfo.in_color_space = JCS_RGB; + jpeg_set_defaults (&cinfo); + jpeg_set_quality (&cinfo, quality, true); // limit to baseline-JPEG values + jpeg_start_compress (&cinfo, true); + + jpegLine = psAlloc (3*image->numCols*sizeof(JSAMPLE)); + jpegLineList[0] = jpegLine; + + psU8 *Rpix = map->red->data.U8; + psU8 *Gpix = map->green->data.U8; + psU8 *Bpix = map->blue->data.U8; + + if (max == min) { + zero = min - 0.1; + scale = 256.0/0.2; + } else { + zero = min; + scale = 256.0/(max - min); + } + + for (int j = 0; j < image->numRows; j++) { + psF32 *row = image->data.F32[j]; + + outPix = jpegLine; + for (int i = 0; i < image->numCols; i++, outPix += 3) { + if (isfinite(row[i])) { + pixel = PS_JPEG_SCALEVALUE(row[i],zero,scale); + } else { + pixel = 0; + } + outPix[0] = Rpix[pixel]; + outPix[1] = Gpix[pixel]; + outPix[2] = Bpix[pixel]; + } + jpeg_write_scanlines(&cinfo, jpegLineList, 1); + } + + jpeg_finish_compress(&cinfo); + fclose(f); + jpeg_destroy_compress(&cinfo); + + psFree(jpegLine); + + return true; +} Index: /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.h =================================================================== --- /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.h (revision 12167) +++ /branches/rel-1-1/psLib/src/jpeg/psImageJpeg.h (revision 12167) @@ -0,0 +1,46 @@ +/* @file psImageJpeg.h + * @brief functions to generate JPEG images from psImage + * + * @author EAM + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + */ + +#ifndef PS_IMAGE_JPEG_H +#define PS_IMAGE_JPEG_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include "psImage.h" + +typedef struct +{ + psVector *red; // Red colormap + psVector *green; // Green colormap + psVector *blue; // Blue colormap +} +psImageJpegColormap; + +#define PS_JPEG_RANGELIM(A)(PS_MAX(0,PS_MIN(255,(A)))) + +#define PS_JPEG_SCALEVALUE(VALUE,ZERO,SCALE)(PS_MAX(0,PS_MIN(255,(SCALE*(VALUE-ZERO))))) + +// allocate a colormap (does not define the map values) +psImageJpegColormap *psImageJpegColormapAlloc(); + +// set the colormap values using the supplied name +psImageJpegColormap *psImageJpegColormapSet(psImageJpegColormap *map, // Colormap to set + const char *name // Name of colormap + ); + +// write out a JPEG file using the supplied image and colormap +// output goes to the specified filename +bool psImageJpeg(const psImageJpegColormap *map, // Color map + const psImage *image, // Image to write + const char *filename, // Filename of JPEG + float min, float max // Minimum and maximum values + ); + +/// @} +#endif /* PS_IMAGE_JPEG_H */ Index: /branches/rel-1-1/psLib/src/mainpage.dox =================================================================== --- /branches/rel-1-1/psLib/src/mainpage.dox (revision 12167) +++ /branches/rel-1-1/psLib/src/mainpage.dox (revision 12167) @@ -0,0 +1,197 @@ +/** @file mainpage.dox + * @brief Main page for the Doxygen documentation + * + * @author Robert Daniel DeSonia, MHPCC + * + * @version $Revision: 1.19 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-12-06 18:46:08 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +/** @mainpage psLib Image Processing Library + +@section intro Introduction + +This library contains the Pan-STARRS Image Processing Pipeline (IPP) common library, +psLib. The intended use is to provide a set of basic software functions in which +can be used throughout the Pan-STARRS project to simplify programming tasks. Among +the benefits are: + - Reuse of code + - Simplification of testing + - Streamlining of code + - Isolation of functionality that may be subject to change + +The capabilities provided by psLib are grouped into the following areas which are +also reflected in the file system directory structure: + - System Utilities + - Data Collections + - Image Operations + - Data Manipulation + - Astronomy + +The capabilities provided by psModuke are grouped into the following areas which are +also reflected in the file system directory structure: + - Configuration + - Astrometry, Focal Plane + - Photometry + - Basic Image Detrending + - Object Detection and Classification + - Image Combination + - Image Subtraction + +This list is sorted in hierarchical order: The later entries depend on the functions and +data types of the earlier entries. + +The installed code for psLib consists of header files and binary libraries in +the form of static and/or shared library, depending on the configuration options. +To assist in using the library, a script "pslib-config" is supplied that +provides the compiler and linker options. + + +@section extinstall 3rd Party Libraries + +Before building psLib from source, several 3rd party software libraries must +be installed. These include: + - GNU Scientific Library (GSL) + - Available at http://www.gnu.org/software/gsl + - Compatibility tested with version 1.4 + - Fastest Fourier Transform in the West (FFTW), version 3, with single-precison float support + - Available at http://www.fftw.org + - Compatibility tested with version is 3.0.1 + - The '--enable-float' option is required in the configure step to enable single-precision float support. Use 'configure --help' for more information of the configuration options for this library. + - C Flexible Image Transport System Input output (CFITSIO), version 2.480 or later + - Available at http://heasarc.gsfc.nasa.gov/docs/software/fitsio + - Compatibility tested with version 2.490, requires at least 2.480 + - Gnome XML C parser and toolkit (libxml2) + - Available at http://www.xmlsoft.org + - Compatibility tested with version 2.6.12 and 2.6.16 + +Though not required to build the base library, several 3rd party software +libraries are needed for particular functionality. + - Doxygen Documentation System + - Required for creation of documentation + - Available at http://www.doxygen.org + - Compatibility tested with version 1.3.2 and 1.3.8 + - The optional companion package, GraphViz (a.k.a., the 'dot' command), is recommended to enable header-file dependency diagrams + - MySQL + - Required for database functionality. If not desired, the '--disable-mysql' configure option should be used. + - Available at http://dev.mysql.com + - Compatibility tested with version 4.1.10a, requires at least 4.1.2 + - A server running locally is required for tests. + - Autoconf/Automake + - Required only if making from CVS + - Available at http://www.gnu.org/software/autoconf and http://www.gnu.org/software/automake + - Compatibility tested with version 2.5.9 (autoconf) and 1.9.2 (automake) + +We recommend using the particular versions listed as compatibility tested, as +that is the only versions tested to work well with psLib. Though it is quite +possible that later versions of the libraries listed will also work as well, +care must be taken when upgrading these libraries to verify that its +functionality is compatible with the tested version. + + +@section obtain How to Obtain the Source + +Tested versions of psLib are put into a tar file and can be downloaded from: + +https://mhpcc.pan-starrs.org/code/releases + +If one has a login account on mhpcc.pan-starrs.org, direct CVS access is also +possible. Example of the commands required for direct CVS retrieval are +as follows: +
+$ cvs -d:ext:USERNAME@mhpcc.pan-starrs.org:/data/panstarrs/cvsroot co -r RELEASEBRANCH psLib
+
+where: + - USERNAME is your login name on the server + - RELEASEBRANCH is the desired release branch, e.g. rel7. + + +@section build How to Build and Test + +The source uses autoconf/automake to build control the build process. If, +and only if, the source came from CVS, the configuration script will have +to be made first via: +
+$ cd psLib
+$ ./autogen.sh
+
+This creates the required configure script and Makefile templates. + +The recommended steps to build the library are: +
+$ cd psLib
+$ ./configure
+$ make
+$ make check
+$ make install
+
+This builds, tests, and installs the library. + +The configure step allows users to specify specific locations for the third +party libraries (see "3rd Party Libraries" for a list), disabling of select +functionality (e.g., database and perl module), installation location, etc. +An enumeration of the options for configure, and the default values, can be +obtained via "./configure --help". + +Though 'make check' compiles and runs the test suite, one can also use custom +scripts to run all the tests and just a particular test. To run the unit test +suite, do the following: +
+$ cd psLib/test
+$ ./FullUnitTest
+
+ +This has the advantage over 'make check' in that it does not stop when a test +fails and it collects some very basic statistics on the results. To run a +particular test, do the following: +
+$ runTest testfilename
+
+ +@section install How to Install + +To install the library using the prefix given in the configure step, execute in +the top build directory: +
+$ make install
+
+ + +@section usage Building and Linking your code to the psLib library + +To assist the use of the library with your own code, a configuration tool is part +of the psLib library package. This tool, pslib-config, is installed in the BIN +directory, according to the options given to the configure script. + +The required CFLAG options for the compiler stage of code that uses psLib can be +obtained via 'pslib-config --cflags'. This outputs the cc options that supplies +include path(s) required to find the psLib headers. + +The required linking options, can be obtained via 'pslib-config --libs'. This +outputs the ld options that supplies the library paths and files required to +link to the pslib library. + +Note: pslib-config usage above refers to the install locations of the library. +To link to the library directly in the build area, you need to use +'pslib-config --build-cflags' and 'pslib-config --build-libs' instead. These +options will modify the output to point to the non-installed (build) locations +of the include files and libraries. (this feature is experimental) + +@section doc How to Create Code Documentation + +Both HTML and man page documentation may be generated from the inline +documentation embedded in the code using the following commands: +
+$ cd psLib
+$ make docs
+
+This places documentation in PREFIX/docs/psLib, where PREFIX is set using +the configure script. + +Also, a prebuilt set of code documentation for releases and can be found at: + +https://mhpcc.pan-starrs.org/docs/ + +*/ Index: /branches/rel-1-1/psLib/src/math/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/math/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/math/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/math/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/math/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/math/Makefile.am (revision 12167) @@ -0,0 +1,57 @@ +#Makefile for math functions of psLib +# +noinst_LTLIBRARIES = libpslibmath.la + +libpslibmath_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(GSL_CFLAGS) +libpslibmath_la_SOURCES = \ + psUnaryOp.c \ + psBinaryOp.c \ + psClip.c \ + psCompare.c \ + psEllipse.c \ + psMathUtils.c \ + psMatrix.c \ + psMD5.c \ + psMinimizeLMM.c \ + psMinimizePowell.c \ + psMinimizePolyFit.c \ + psPolynomial.c \ + psPolynomialMetadata.c \ + psPolynomialUtils.c \ + psRandom.c \ + psRegion.c \ + psRegionForImage.c \ + psSparse.c \ + psSpline.c \ + psStats.c \ + psHistogram.c \ + psVectorSmooth.c + +EXTRA_DIST = math.i + +pkginclude_HEADERS = \ + psUnaryOp.h \ + psBinaryOp.h \ + psClip.h \ + psCompare.h \ + psConstants.h \ + psEllipse.h \ + psMathUtils.h \ + psMatrix.h \ + psMD5.h \ + psMinimizeLMM.h \ + psMinimizePowell.h \ + psMinimizePolyFit.h \ + psPolynomial.h \ + psPolynomialMetadata.h \ + psPolynomialUtils.h \ + psRandom.h \ + psRegion.h \ + psRegionForImage.h \ + psSparse.h \ + psSpline.h \ + psStats.h \ + psHistogram.h \ + psVectorSmooth.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/math/math.i =================================================================== --- /branches/rel-1-1/psLib/src/math/math.i (revision 12167) +++ /branches/rel-1-1/psLib/src/math/math.i (revision 12167) @@ -0,0 +1,12 @@ +/* math headers */ + +%include "psBinaryOp.h" +%include "psCompare.h" +%include "psConstants.h" +%include "psMatrix.h" +%include "psMinimize.h" +%include "psPolynomial.h" +%include "psSpline.h" +%include "psRandom.h" +%include "psStats.h" +%include "psUnaryOp.h" Index: /branches/rel-1-1/psLib/src/math/psBinaryOp.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psBinaryOp.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psBinaryOp.c (revision 12167) @@ -0,0 +1,564 @@ +/** @file psBinaryOp.c + * + * @brief Provides binary functions for simple matrix and vector element operations. Functions + * include: + * + * Addition (+) + * Subtraction (-) + * Multiplication (*) + * Division (/) + * Power (^) + * Minimum (min) + * Maximum (max) + * Absolute value (abs) + * Exponent (exp) + * Natural Log (ln) + * Power of 10 (ten) + * Log (log) + * Sine (sin or dsin) + * Cosine (cos or dcos) + * Tangent (tan or dtan) + * Arcsine (asin or dasin) + * Arccosine (acos or dacos) + * Arctan (atan or datan) + * + * Currently only vector-vector and image-image binary operations are supported. + * + * @ingroup MatrixArithmetic + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/****************************************************************************** + * INCLUDE FILES * + ******************************************************************************/ +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psImage.h" +#include "psVector.h" +#include "psScalar.h" +#include "psLogMsg.h" +#include "psAssert.h" + + +/***************************************************************************** + * FUNCTION IMPLEMENTATION - LOCAL * + *****************************************************************************/ + +// Binary SCALAR_XXXX operations +#define SCALAR_SCALAR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + ps##TYPE *o = &((psScalar*)OUT)->data.TYPE; \ + ps##TYPE *i1 = &((psScalar*)IN1)->data.TYPE; \ + ps##TYPE *i2 = &((psScalar*)IN2)->data.TYPE; \ + *o = OP; \ +} + +#define SCALAR_VECTOR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long npt = ((psVector*)IN2)->n; \ + ps##TYPE *o = ((psVector*)OUT)->data.TYPE; \ + ps##TYPE *i1 = &((psScalar*)IN1)->data.TYPE; \ + ps##TYPE *i2 = ((psVector*)IN2)->data.TYPE; \ + for (long i = 0; i < npt; i++, o++, i2++) { \ + *o = OP; \ + } \ +} + +#define SCALAR_IMAGE(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long numRows = ((psImage*)IN2)->numRows; \ + long numCols = ((psImage*)IN2)->numCols; \ + for (long j = 0; j < numCols; j++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = &((psScalar*)IN1)->data.TYPE; \ + ps##TYPE *i2 = ((psImage*)IN2)->data.TYPE[j]; \ + for (long i = 0; i < numRows; i++, o++, i2++) { \ + *o = OP; \ + } \ + } \ +} + +// Binary VECTOR_XXXX operations +#define VECTOR_SCALAR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long n1 = ((psVector*)IN1)->n; \ + ps##TYPE *o = ((psVector*)OUT)->data.TYPE; \ + ps##TYPE *i1 = ((psVector*)IN1)->data.TYPE; \ + ps##TYPE *i2 = &((psScalar*)IN2)->data.TYPE; \ + for (long i = 0; i < n1; i++, o++, i1++) { \ + *o = OP; \ + } \ +} + +#define VECTOR_VECTOR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long n1 = ((psVector*)IN1)->n; \ + long n2 = ((psVector*)IN2)->n; \ + if (n1 != n2) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), n1, n2); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + ps##TYPE *o = ((psVector*)OUT)->data.TYPE; \ + ps##TYPE *i1 = ((psVector*)IN1)->data.TYPE; \ + ps##TYPE *i2 = ((psVector*)IN2)->data.TYPE; \ + for (long i = 0; i < n1; i++, o++, i1++, i2++) { \ + *o = OP; \ + } \ +} + +#define VECTOR_IMAGE(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long n1 = ((psVector*)IN1)->n; \ + long numRows2 = ((psImage*)IN2)->numRows; \ + long numCols2 = ((psImage*)IN2)->numCols; \ + \ + if (((psVector*)IN1)->type.dimen == PS_DIMEN_VECTOR) { /* Regular vectors */ \ + if (n1 != numRows2) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), n1, numRows2); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + \ + ps##TYPE *i1 = ((psVector*)IN1)->data.TYPE; \ + for (long j = 0; j < numRows2; j++, i1++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i2 = ((psImage*)IN2)->data.TYPE[j]; \ + for (long i = 0; i < numCols2; i++, o++, i2++) { \ + *o = OP; \ + } \ + } \ + } else { /* Transposed vectors */ \ + if (n1 != numCols2) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), n1, numCols2); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + \ + for (long j = 0; j < numRows2; j++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psVector*)IN1)->data.TYPE; \ + ps##TYPE *i2 = ((psImage*)IN2)->data.TYPE[j]; \ + for (long i = 0; i < numCols2; i++, o++, i1++, i2++) { \ + *o = OP; \ + } \ + } \ + } \ +} + +// Binary IMAGE_XXXX operations +#define IMAGE_SCALAR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long numRows = ((psImage*)IN1)->numRows; \ + long numCols = ((psImage*)IN1)->numCols; \ + for (long j = 0; j < numRows; j++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psImage*)IN1)->data.TYPE[j]; \ + ps##TYPE *i2 = &((psScalar*)IN2)->data.TYPE; \ + for (long i = 0; i < numCols; i++, o++, i1++) { \ + *o = OP; \ + } \ + } \ +} + +#define IMAGE_VECTOR(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long n2 = ((psVector*)IN2)->n; \ + long numRows1 = ((psImage*)IN1)->numRows; \ + long numCols1 = ((psImage*)IN1)->numCols; \ + \ + if (((psVector*)IN2)->type.dimen == PS_DIMEN_VECTOR) { /* Regular vectors */ \ + if (n2 != numRows1) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), n2, numRows1); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + \ + ps##TYPE *i2 = ((psVector* )IN2)->data.TYPE; \ + for (long j = 0; j < numRows1; j++, i2++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psImage*)IN1)->data.TYPE[j]; \ + for (long i = 0; i < numCols1; i++, o++, i1++) { \ + *o = OP; \ + } \ + } \ + } else { /* Transposed vectors */ \ + if (n2 != numCols1) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), n2, numCols1); \ + if (OUT != IN1) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + \ + for (long j = 0; j < numRows1; j++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psVector*)IN2)->data.TYPE; \ + ps##TYPE *i2 = ((psImage*)IN1)->data.TYPE[j]; \ + for (long i = 0; i < numCols1; i++, o++, i2++, i1++) { \ + *o = OP; \ + } \ + } \ + } \ +} + +#define IMAGE_IMAGE(OUT,IN1,OP,IN2,TYPE) \ +{ \ + long numRows1 = ((psImage*)IN1)->numRows; \ + long numCols1 = ((psImage*)IN1)->numCols; \ + long numRows2 = ((psImage*)IN2)->numRows; \ + long numCols2 = ((psImage*)IN2)->numCols; \ + if (numRows1 != numRows2 || numCols1 != numCols2) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Specified psImage dimensions differed, %ldx%ld vs %ldx%ld."), \ + numCols1, numRows1, numCols2, numRows2); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + for (long j = 0; j < numRows1; j++) { \ + ps##TYPE *o = ((psImage*)OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psImage*)IN1)->data.TYPE[j]; \ + ps##TYPE *i2 = ((psImage*)IN2)->data.TYPE[j]; \ + for (long i = 0; i < numCols1; i++, o++, i1++, i2++) { \ + *o = OP; \ + } \ + } \ +} + + +// Preprocessor macro function to create arithmetic function based on input type --- for integers only +#define BINARY_TYPE_INTEGER(DIM1,DIM2,OUT,IN1,OP,IN2) \ +switch (IN1->type) { \ +case PS_TYPE_U8: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U8); \ + break; \ +case PS_TYPE_U16: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U16); \ + break; \ +case PS_TYPE_U32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U32); \ + break; \ +case PS_TYPE_U64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U64); \ + break; \ +case PS_TYPE_S8: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S8); \ + break; \ +case PS_TYPE_S16: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S16); \ + break; \ +case PS_TYPE_S32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S32); \ + break; \ +case PS_TYPE_S64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S64); \ + break; \ +default: \ + /* char* strType; \ + PS_TYPE_NAME(strType,IN1->type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Specified data type, %s, is not supported."), \ + strType); */ \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ +} + +// Preprocessor macro function to create arithmetic function based on input type +#define BINARY_TYPE(DIM1,DIM2,OUT,IN1,OP,IN2) \ +switch (IN1->type) { \ +case PS_TYPE_U8: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U8); \ + break; \ +case PS_TYPE_U16: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U16); \ + break; \ +case PS_TYPE_U32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U32); \ + break; \ +case PS_TYPE_U64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,U64); \ + break; \ +case PS_TYPE_S8: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S8); \ + break; \ +case PS_TYPE_S16: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S16); \ + break; \ +case PS_TYPE_S32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S32); \ + break; \ +case PS_TYPE_S64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,S64); \ + break; \ +case PS_TYPE_F32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,F32); \ + break; \ +case PS_TYPE_F64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,F64); \ + break; \ +case PS_TYPE_C32: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,C32); \ + break; \ +case PS_TYPE_C64: \ + DIM1##_##DIM2(OUT,IN1,OP,IN2,C64); \ + break; \ +default: \ + /* char* strType; \ + PS_TYPE_NAME(strType,IN1->type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Specified data type, %s, is not supported."), \ + strType); */ \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ +} + +// Preprocessor macro function to create arithmetic function operation name +#define BINARY_OP(DIM1,DIM2,OUT,IN1,OP,IN2) \ +if (!strncmp(OP, "+", 1)) { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,*i1 + *i2,IN2); \ +} else if (!strncmp(OP, "-", 1)) { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,*i1 - *i2,IN2); \ +} else if (!strncmp(OP, "*", 1)) { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,*i1 * *i2,IN2); \ +} else if (!strncmp(OP, "/", 1)) { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,*i1 / *i2,IN2); \ +} else if (!strncmp(OP, "&", 1)) { \ + if (PS_IS_PSELEMTYPE_INT(IN1->type) && PS_IS_PSELEMTYPE_INT(IN2->type)) { \ + BINARY_TYPE_INTEGER(DIM1,DIM2,OUT,IN1,(*i1) & (*i2),IN2); \ + } else { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Types (%x,%x) are not appropriate for logical AND.\n", IN1->type, IN2->type); \ + return NULL; \ + } \ +} else if (!strncmp(OP, "|", 1)) { \ + if (PS_IS_PSELEMTYPE_INT(IN1->type) && PS_IS_PSELEMTYPE_INT(IN2->type)) { \ + BINARY_TYPE_INTEGER(DIM1,DIM2,OUT,IN1,(*i1) | (*i2),IN2); \ + } else { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Types (%x,%x) are not appropriate for logical OR.\n", IN1->type, IN2->type); \ + return NULL; \ + } \ +} else if (!strncmp(OP, "^", 1)) { \ + if (PS_IS_PSELEMTYPE_COMPLEX(IN1->type)) { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,cpow(*i1,*i2),IN2); \ + } else { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,pow(*i1,*i2),IN2); \ + } \ +} else if (!strncmp(OP, "min", 3)) { \ + if (PS_IS_PSELEMTYPE_COMPLEX(IN1->type)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("The minimum operation is not supported with complex data.")); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } else { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,fmin(*i1,*i2),IN2); \ + } \ +} else if (!strncmp(OP, "max", 3)) { \ + if (PS_IS_PSELEMTYPE_COMPLEX(IN1->type)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("The maximum operation is not supported with complex data.")); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ + } else { \ + BINARY_TYPE(DIM1,DIM2,OUT,IN1,fmax(*i1,*i2),IN2); \ + } \ +} else { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + _("Specified operation, %s, is not supported."), \ + OP); \ + if (OUT != IN1 && OUT != IN2) { \ + psFree(OUT); \ + } \ + return NULL; \ +} + +psMathType* psBinaryOp(psPtr out, const psPtr in1, const char *op, const psPtr in2) +{ + + psVector* input1 = (psVector* ) in1; + psVector* input2 = (psVector* ) in2; + + #define psBinaryOp_EXIT { \ + if (out != in1 && out != in2) { \ + psFree(out); \ + } \ + return NULL; \ + } + + PS_ASSERT_GENERAL_PTR_NON_NULL(input1, psBinaryOp_EXIT); + PS_ASSERT_GENERAL_PTR_NON_NULL(input2, psBinaryOp_EXIT); + PS_ASSERT_GENERAL_PTR_NON_NULL(op, psBinaryOp_EXIT); + + PS_ASSERT_PTRS_TYPE_EQUAL_GENERAL(input1,input2, psBinaryOp_EXIT); + + PS_ASSERT_PTR_DIMEN_GENERAL_NOT(input1, PS_DIMEN_OTHER, psBinaryOp_EXIT); + PS_ASSERT_PTR_DIMEN_GENERAL_NOT(input2, PS_DIMEN_OTHER, psBinaryOp_EXIT); + + psMathType* psType1 = (psMathType*)in1; + psMathType* psType2 = (psMathType*)in2; + psDimen dim1 = psType1->dimen; + psDimen dim2 = psType2->dimen; + psElemType elType1 = psType1->type; + psElemType elType2 = psType2->type; + + if (dim1 == PS_DIMEN_VECTOR || dim1 == PS_DIMEN_TRANSV) { + if (((psVector* ) in1)->n == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Vector contains zero elements"); + } + } else if (dim1 == PS_DIMEN_IMAGE) { + if (((psImage* ) in1)->numCols == 0 || ((psImage* ) in1)->numRows == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Image contains zero length row or cols"); + } + } + + if (dim2 == PS_DIMEN_VECTOR || dim2 == PS_DIMEN_TRANSV) { + if (((psVector* ) in2)->n == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Vector contains zero elements"); + } + } else if (dim2 == PS_DIMEN_IMAGE) { + if (((psImage* ) in2)->numCols == 0 || ((psImage* ) in2)->numRows == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Image contains zero length row or cols"); + } + } + + if (dim1 == PS_DIMEN_SCALAR) { + if ( out != NULL && ((psMathType*)out)->dimen != dim2) { + if (out != in1 && out != in2) { + psFree(out); + } + out = NULL; + } + if (dim2 == PS_DIMEN_SCALAR) { + if (out == NULL || ((psScalar*)out)->type.type != elType1) { + if (out != in1 && out != in2) { + psFree(out); + } + out = psScalarAlloc(0.0,elType1); + } + BINARY_OP(SCALAR, SCALAR, out, psType1, op, psType2); // scalar op scalar + } else if (dim2 == PS_DIMEN_VECTOR || dim2 == PS_DIMEN_TRANSV) { + out = psVectorRecycle(out,((psVector*)in2)->n,elType1); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psVector.")); + return NULL; + } + ((psVector*)out)->n = ((psVector*)in2)->n; + BINARY_OP(SCALAR, VECTOR, out, psType1, op, psType2); // scalar op vector + } else if (dim2 == PS_DIMEN_IMAGE) { + out = psImageRecycle(out, ((psImage* ) in2)->numCols, ((psImage* ) in2)->numRows,elType1); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psImage.")); + return NULL; + } + BINARY_OP(SCALAR, IMAGE, out, psType1, op, psType2); // scalar op image + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified parameter, %s, has invalid dimensionality, %d."), + "in2",dim2); + psBinaryOp_EXIT; + } + } else if (dim1 == PS_DIMEN_VECTOR || dim1 == PS_DIMEN_TRANSV) { + if (dim2 == PS_DIMEN_SCALAR) { + out = psVectorRecycle(out,((psVector*)in1)->n,elType1); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psVector.")); + return NULL; + } + ((psVector*)out)->n = ((psVector*)in1)->n; + BINARY_OP(VECTOR, SCALAR, out, psType1, op, psType2); // vector op scalar + } else if (dim2 == PS_DIMEN_VECTOR || dim2 == PS_DIMEN_TRANSV) { + out = psVectorRecycle(out,((psVector*)in2)->n,elType2); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psVector.")); + return NULL; + } + ((psVector*)out)->n = ((psVector*)in2)->n; + BINARY_OP(VECTOR, VECTOR, out, psType1, op, psType2); // vector op vector + } else if (dim2 == PS_DIMEN_IMAGE) { + out = psImageRecycle(out, ((psImage* ) in2)->numCols, ((psImage* ) in2)->numRows, elType2); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psImage.")); + return NULL; + } + BINARY_OP(VECTOR, IMAGE, out, psType1, op, psType2); // vector op image + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified parameter, %s, has invalid dimensionality, %d."), + "in2",dim2); + psBinaryOp_EXIT; + } + } else if (dim1 == PS_DIMEN_IMAGE) { + out = psImageRecycle(out, ((psImage*)in1)->numCols, ((psImage*)in1)->numRows, elType1); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Couldn't create a proper output psImage.")); + return NULL; + } + if (dim2 == PS_DIMEN_SCALAR) { + BINARY_OP(IMAGE, SCALAR, out, psType1, op, psType2); // image op scalar + } else if (dim2 == PS_DIMEN_VECTOR || dim2 == PS_DIMEN_TRANSV) { + BINARY_OP(IMAGE, VECTOR, out, psType1, op, psType2); // image op vector + } else if (dim2 == PS_DIMEN_IMAGE) { + BINARY_OP(IMAGE, IMAGE, out, psType1, op, psType2); // image op image + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified parameter, %s, has invalid dimensionality, %d."), + "in2",dim2); + psBinaryOp_EXIT; + } + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified parameter, %s, has invalid dimensionality, %d."), + "in1",dim1); + psBinaryOp_EXIT; + } + + // Automtically free psScalar types, since they are usually allocated in the argument list when this + // function is called, provided that the input is not the output. + if (psType1->dimen==PS_DIMEN_SCALAR && in1!=out) { + psFree(in1); + } + + if (psType2->dimen==PS_DIMEN_SCALAR && in2!=out) { + psFree(in2); + } + + return out; +} Index: /branches/rel-1-1/psLib/src/math/psBinaryOp.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psBinaryOp.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psBinaryOp.h (revision 12167) @@ -0,0 +1,63 @@ +/* @file psBinaryOp.h + * + * @brief Provides binary functions for simple matrix and vector element operations. + * + * Functions include: + * Addition (+) + * Subtraction (-) + * Multiplication (*) + * Division (/) + * Power (^) + * Minimum (min) + * Maximum (max) + * Absolute value (abs) + * Exponent (exp) + * Natural Log (ln) + * Power of 10 (ten) + * Log (log) + * Sine (sin or dsin) + * Cosine (cos or dcos) + * Tangent (tan or dtan) + * Arcsine (asin or dasin) + * Arccosine (acos or dacos) + * Arctan (atan or datan) + * + * Currently only vector-vector and image-image binary operations are supported. + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSBINARY_OP_H +#define PSBINARY_OP_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/** Perform simple binary arithmetic with images or vectors + * + * Performs addition, subtraction, multiplication, division, power, minumum, and maximum arithmetic + * operations with images and vectors. Uses the form: + * + * out = in1 op in2, + * + * Where op is: "=", "+", "-", "*", "/", "^", "min", or "max" + * + * This function only supports vector-vector or image-image operations. + * + * @return psType* : Pointer to either psImage or psVector. + */ +psMathType* psBinaryOp( + psPtr out, ///< Output type, either psImage or psVector. + const psPtr in1, ///< First input, either psImage or psVector. + const char *op, ///< Operator. + const psPtr in2 ///< Second input, either psImage or psVector. +); + +/// @} +#endif // #ifndef PSBINARY_OP_H Index: /branches/rel-1-1/psLib/src/math/psClip.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psClip.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psClip.c (revision 12167) @@ -0,0 +1,197 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psErrorCodes.h" +#include "psAssert.h" +#include "psTrace.h" +#include "psVector.h" +#include "psStats.h" +#include "psClip.h" + +// No-op; purpose of function is merely to identify the type +static void clipParamsFree(psClipParams *params) +{ + return; +} + +psClipParams *psClipParamsAlloc(psStatsOptions meanStat, psStatsOptions stdevStat, + psMaskType masked, psMaskType clipped) +{ + psClipParams *params = psAlloc(sizeof(psClipParams)); // Clip parameters + psMemSetDeallocator(params, (psFreeFunc)clipParamsFree); + + params->meanStat = meanStat; + params->stdevStat = stdevStat; + params->fracHigh = 0.0; + params->fracLow = 0.0; + params->numKeep = 0; + params->iter = 1; + params->rej = 0.0; + params->masked = masked; + params->clipped = clipped; + + params->mean = NAN; + params->stdev = NAN; + + return params; +} + + +long psClipMinMax(const psClipParams *params, const psVector *values, psVector *mask) +{ + PS_ASSERT_VECTOR_NON_NULL(values, -1); + PS_ASSERT_VECTOR_NON_NULL(mask, -1); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_MASK, -1); + PS_ASSERT_PTR(params, -1); + PS_ASSERT_VECTORS_SIZE_EQUAL(values, mask, -1); + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(params->fracLow, 0.0, -1); + PS_ASSERT_FLOAT_LESS_THAN(params->fracLow, 1.0, -1); + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(params->fracHigh, 0.0, -1); + PS_ASSERT_FLOAT_LESS_THAN(params->fracHigh, 1.0, -1); + PS_ASSERT_INT_NONZERO(params->clipped, -1); + + if (params->fracLow == 0.0 && params->fracHigh == 0.0) { + // No min-max rejection desired + return 0; + } + + psMaskType masked = params->masked; // Indicates masked values + psMaskType clipped = params->clipped; // Indicates clipped values + masked |= clipped; // Make sure we're also masking clipped values + psMaskType *maskData = mask->data.PS_TYPE_MASK_DATA; // Dereference mask + long totalMasked = 0; // Total number of pixels masked + + // Apply fracLow,fracHigh if there are enough values + + // Run through to get number of operational values + long numValid = 0; // Number of valid values + for (long i = 0; i < mask->n; i++) { + if (!(maskData[i] & masked)) { + numValid++; + } + } + psTrace("psLib.math", 2, "%ld valid values.\n", numValid); + + // XXX: Not sure if sorting provides the fastest implementation. It might be quicker to do a linear pass + // through the data, pulling out the highest M and lowest N values, + + float keepFrac = 1.0 - params->fracLow - params->fracHigh; // Fraction of values to keep + if (numValid * keepFrac >= params->numKeep) { + psTrace("psLib.math", 1, "Applying min/max clipping.\n"); + psVector *index = psVectorSortIndex(NULL, values); + int numLow = numValid * params->fracLow; // Number of low values to clip + int numHigh = numValid * params->fracHigh; // Number of high values to clip + // Low values + psS32 *indexData = index->data.S32; // Dereference index + long numMasked = 0; // Number masked + for (long i = 0; i < index->n && numMasked < numLow; i++) { + // Don't count the ones that are already masked + if (! (maskData[indexData[i]] & masked)) { + maskData[indexData[i]] |= clipped; + numMasked++; + } + } + totalMasked += numMasked; + numMasked = 0; + // High values + for (long i = values->n - 1; i >= 0 && numMasked < numHigh; i--) { + // Don't count the ones that are already masked + if (! (maskData[indexData[i]] & masked)) { + maskData[indexData[i]] |= clipped; + numMasked++; + } + } + totalMasked += numMasked; + psFree(index); + } + + return totalMasked; +} + + +long psClipReject(psClipParams *params, const psVector *values, psVector *mask, const psVector *errors) +{ + PS_ASSERT_VECTOR_NON_NULL(values, -1); + PS_ASSERT_VECTOR_NON_NULL(mask, -1); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_MASK, -1); + PS_ASSERT_PTR(params, -1); + PS_ASSERT_VECTORS_SIZE_EQUAL(values, mask, -1); + if (errors) { + PS_ASSERT_VECTOR_NON_NULL(errors, -1); + PS_ASSERT_VECTORS_SIZE_EQUAL(values, errors, -1); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(values, -1); + PS_ASSERT_VECTOR_TYPE_EQUAL(values, errors, -1); + } + PS_ASSERT_INT_NONZERO(params->meanStat, -1); + PS_ASSERT_INT_NONZERO(params->stdevStat, -1); + if (!isfinite(params->rej) || params->rej < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Rejection limit (%f) is not valid.\n", params->rej); + return -1; + } + + if (params->rej == 0.0) { + // No clipping desired + return 0; + } + + psMaskType masked = params->masked; // Indicates masked values + psMaskType clipped = params->clipped; // Indicates clipped values + masked |= clipped; // Make sure we're also masking clipped values + + // Get statistics + psStats *stats = psStatsAlloc(params->meanStat | params->stdevStat); + if (!psVectorStats(stats, values, errors, mask, masked)) { + psError(PS_ERR_UNKNOWN, false, "Unable to perform statistics on values.\n"); + psFree(stats); + return -1; + } + params->mean = psStatsGetValue(stats, params->meanStat); + params->stdev = psStatsGetValue(stats, params->stdevStat); + + #define REJECT_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + ps##TYPE *valuesData = values->data.TYPE; /* Dereference for speed */ \ + psMaskType *maskData = mask->data.PS_TYPE_MASK_DATA; /* Dereference mask for speed */ \ + if (errors) { \ + ps##TYPE *errorsData = errors->data.TYPE; \ + for (int j = 0; j < values->n; j++) { \ + if (!(maskData[j] & masked) && \ + fabs(valuesData[j] - params->mean) > params->rej * errorsData[j]) { \ + maskData[j] |= clipped; \ + totalMasked++; \ + } \ + } \ + } else { \ + ps##TYPE limit = params->rej * params->stdev; /* Limit on deviation */ \ + for (int j = 0; j < values->n; j++) { \ + if (!(maskData[j] & masked) && fabs(valuesData[j] - params->mean) > limit) { \ + maskData[j] |= clipped; \ + totalMasked++; \ + } \ + } \ + } \ + } + + long totalMasked = 0; // Total number of pixels masked + switch (values->type.type) { + REJECT_CASE(S8); + REJECT_CASE(S16); + REJECT_CASE(S32); + REJECT_CASE(S64); + REJECT_CASE(F32); + REJECT_CASE(F64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Unsupported vector type: %x\n", values->type.type); + psFree(stats); + return -1; + } + + psFree(stats); + return totalMasked; +} Index: /branches/rel-1-1/psLib/src/math/psClip.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psClip.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psClip.h (revision 12167) @@ -0,0 +1,58 @@ +/* @file psClip.h + * @brief vector clipping functions + * + * @author Paul Price, IfA. + * + * $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * $Date: 2007-02-13 00:19:51 $ + * Copyright 2007 Institute for Astronomy, University of Hawaii + */ + +#ifndef PS_CLIP_H +#define PS_CLIP_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/// Parameters for clipping +typedef struct +{ + psStatsOptions meanStat; ///< Stats option to use for mean + psStatsOptions stdevStat; ///< Stats option to use for standard deviation + float fracHigh; ///< Fraction of high values to clip + float fracLow; ///< Fraction of low values to clip + int numKeep; ///< Minimum number of values to keep from clipping + int iter; ///< Number of rejection iterations; unused by psClip functions + float rej; ///< Rejection limit (standard deviations) + psMaskType masked; ///< Mask value for entries already masked + psMaskType clipped; ///< Mask value to give to clipped entries + double mean; ///< Resultant mean + double stdev; ///< Resultant stdev +} +psClipParams; + + + +/// Apply min-max clipping to a list of values +/// +/// The specified fraction of high and low values are identified as clipped in the mask. Errors are not used +/// in this step. +long psClipMinMax(const psClipParams *params, ///< Clip parameters + const psVector *values, ///< Values to inspect and clip + psVector *mask ///< Mask for values + ); + + + +/// Apply a rejection iteration to a list of values +/// +/// The specified rejection limit is applied to the values and errors; discrepant values are identified as +/// clipped in the mask. This function only applies a single rejection iteration. +long psClipReject(psClipParams *params, ///< Clip parameters + const psVector *values, ///< Values to inspect and clip + psVector *mask, ///< Mask for values + const psVector *errors ///< Errors for values, or NULL + ); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psCompare.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psCompare.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psCompare.c (revision 12167) @@ -0,0 +1,123 @@ + +/** @file psCompare.c + * @brief Comparison functions for sorting routines + * @ingroup Compare + * + * @author Robert Lupton, Princeton University + * @author Robert Daniel DeSonia, MHPCC + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include "psCompare.h" + +#define COMPARE_NUMERIC_PTR(TYPE) \ +int psCompare##TYPE##Ptr(const void** a, const void** b) { \ + return **((ps##TYPE**)a) - **((ps##TYPE**)b); \ +} + +#define COMPARE_NUMERIC_PTR_DESCENDING(TYPE) \ +int psCompareDescending##TYPE##Ptr(const void** a, const void** b) { \ + return **((ps##TYPE**)b) - **((ps##TYPE**)a); \ +} + +#define COMPARE_NUMERIC(TYPE) \ +int psCompare##TYPE(const void* a, const void* b) { \ + return *((ps##TYPE*)a) - *((ps##TYPE*)b); \ +} + +#define COMPARE_NUMERIC_DESCENDING(TYPE) \ +int psCompareDescending##TYPE(const void* a, const void* b) { \ + return *((ps##TYPE*)b) - *((ps##TYPE*)a); \ +} + +COMPARE_NUMERIC_PTR(S8) +COMPARE_NUMERIC_PTR(S16) +COMPARE_NUMERIC_PTR(S32) +COMPARE_NUMERIC_PTR(S64) +COMPARE_NUMERIC_PTR(U8) +COMPARE_NUMERIC_PTR(U16) +COMPARE_NUMERIC_PTR(U32) +COMPARE_NUMERIC_PTR(U64) + +int psCompareF32Ptr(const void** a, const void** b) +{ + psF32 diff = **((psF32**)a) - **((psF32**)b); + return (diff>FLT_EPSILON) ? 1 : ((diffDBL_EPSILON) ? 1 : ((diffFLT_EPSILON) ? 1 : ((diffDBL_EPSILON) ? 1 : ((diffFLT_EPSILON) ? 1 : ((diffDBL_EPSILON) ? 1 : ((diffFLT_EPSILON) ? 1 : ((diffDBL_EPSILON) ? 1 : ((diff // for M_PI + +/***************************************************************************** +These are common mathimatical constants used by various functions in the psLib. + *****************************************************************************/ +#ifndef M_PI +#define M_PI 3.1415926535897932384626433832795029 /* pi */ +#define M_PI_2 1.5707963267948966192313216916397514 /* pi/2 */ +#define M_PI_4 0.7853981633974483096156608458198757 /* pi/4 */ +#define M_1_PI 0.3183098861837906715377675267450287 /* 1/pi */ +#define M_2_PI 0.6366197723675813430755350534900574 /* 2/pi */ +#endif // #ifndef M_PI + +#define DEG_TO_RAD(DEGREES) ((DEGREES) * M_PI / 180.0) +#define MIN_TO_RAD(MINUTES) ((MINUTES) * M_PI / (180.0 * 60.0)) +#define SEC_TO_RAD(SECONDS) ((SECONDS) * M_PI / (180.0 * 60.0 * 60.0)) +#define RAD_TO_DEG(RADIANS) ((RADIANS) * 180.0 / M_PI) +#define RAD_TO_MIN(RADIANS) ((RADIANS) * 180.0 * 60.0 / M_PI) +#define RAD_TO_SEC(RADIANS) ((RADIANS) * 180.0 * 60.0 * 60.0 / M_PI) + +/***************************************************************************** + Misc. macros: +*****************************************************************************/ +#define PS_MAX(A, B) \ +(((A) > (B)) ? (A) : (B)) + +#define PS_MIN(A, B) \ +(((A) < (B)) ? (A) : (B)) + +#define PS_SQR(A) \ +((A) * (A)) + +#define PS_SWAP(X,Y) {double tmp=(X); (X) = (Y); (Y) = tmp;} + +// These defines for bitwise opertaions are necessary to yield results of the proper size (use instead of ~) +#define PS_NOT_U8(A)(UCHAR_MAX-(A)) // Perform bitwise NOT on A which is of type U8 +#define PS_NOT_U16(A)(USHORT_MAX-(A)) // Perform bitwaise NOT on A which is of type U16 + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psEllipse.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psEllipse.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psEllipse.c (revision 12167) @@ -0,0 +1,115 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include "psConstants.h" +#include "psEllipse.h" + +// ellipse rotation (major, minor, theta) -> (x2, y2, xy) +psEllipseMoments psEllipseAxesToMoments(psEllipseAxes axes) +{ + psEllipseMoments moments; + + double f1 = PS_SQR(axes.major) + PS_SQR(axes.minor); + double f2 = PS_SQR(axes.major) - PS_SQR(axes.minor); + + moments.x2 = +0.5*f1 + 0.5*f2*cos(2*axes.theta); + moments.y2 = +0.5*f1 - 0.5*f2*cos(2*axes.theta); + moments.xy = +0.5*f2*sin(2*axes.theta); + + assert (isfinite(moments.x2)); + assert (isfinite(moments.y2)); + assert (isfinite(moments.xy)); + + return moments; +} + +// ellipse rotation (x2, y2, xy) -> (major, minor, theta) +psEllipseAxes psEllipseMomentsToAxes(psEllipseMoments moments, double maxAR) +{ + psEllipseAxes axes; + + double g1 = moments.x2 + moments.y2; + double g2 = moments.x2 - moments.y2; + double g3 = sqrt(PS_SQR(g2) + 4*PS_SQR(moments.xy)); + + axes.major = sqrt (0.5*(g1 + g3)); + axes.theta = +0.5 * atan2 (+2.0*moments.xy, g2); // theta in radians + + // long, thin objects are likely to have a poorly measured minor axis + // the angle and major axis are likely to be ok. + // restrict the axis ratio + double rAR2 = (g1 - g3) / (g1 + g3); + if (rAR2 < 1.0/PS_SQR(maxAR)) { + axes.minor = axes.major / maxAR; + } else { + axes.minor = sqrt (0.5*(g1 - g3)); + } + + assert (isfinite(axes.major)); + assert (isfinite(axes.minor)); + assert (isfinite(axes.theta)); + + return axes; +} + +// ellipse rotation (major, minor, theta) -> (sx, sy, sxy) +psEllipseShape psEllipseAxesToShape(psEllipseAxes axes) +{ + psEllipseShape shape; + + double f1 = 1.0 / PS_SQR(axes.minor) + 1.0 / PS_SQR(axes.major); + double f2 = 1.0 / PS_SQR(axes.minor) - 1.0 / PS_SQR(axes.major); + + double sxr = 0.5*f1 - 0.5*f2*cos(2*axes.theta); + double syr = 0.5*f1 + 0.5*f2*cos(2*axes.theta); + + shape.sx = +1.0 / sqrt(sxr); + shape.sy = +1.0 / sqrt(syr); + shape.sxy = -0.5*f2*sin(2*axes.theta); + + assert (isfinite(shape.sx)); + assert (isfinite(shape.sy)); + assert (isfinite(shape.sxy)); + + return shape; +} + +// ellipse derotation (sx, sy, sxy) -> (major, minor, theta) +psEllipseAxes psEllipseShapeToAxes(psEllipseShape shape, double maxAR) +{ + psEllipseAxes axes; + + double f1 = 1.0 / PS_SQR(shape.sy) + 1.0 / PS_SQR(shape.sx); + double f2 = 1.0 / PS_SQR(shape.sy) - 1.0 / PS_SQR(shape.sx); + double f3 = sqrt(PS_SQR(f2) + 4*PS_SQR(shape.sxy)); + + axes.minor = sqrt (2.0 / (f1 + f3)); + axes.theta = -0.5 * atan2 (+2.0*shape.sxy, f2); + + // long, thin objects are likely to have a poorly measured major axis + // the angle and minor axis are likely to be ok. + // restrict the axis ratio + double rAR2 = (f1 - f3) / (f1 + f3); + if (rAR2 < 1.0/PS_SQR(maxAR)) { + axes.major = axes.minor * maxAR; + } else { + axes.major = sqrt (2.0 / (f1 - f3)); + } + + assert (isfinite(axes.theta)); + assert (isfinite(axes.major)); + assert (isfinite(axes.minor)); + + return axes; +} + +// XXX keep this construction? +// force the axis ratio to be less than 10 +// double r1 = 0.5*0.95*sqrt (PS_SQR(f1) - PS_SQR(f2)); + +// double f = sqrt (0.25*PS_SQR(moments.x2 - moments.y2) + PS_SQR(moments.xy)); +// if (f > (moments.x2 + moments.y2) / 2.0) { +// f = 0.98*(moments.x2 + moments.y2) / 2.0; Index: /branches/rel-1-1/psLib/src/math/psEllipse.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psEllipse.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psEllipse.h (revision 12167) @@ -0,0 +1,47 @@ +/* @file psEllipse.h + * @brief functions to manipulate sparse matrices equations + * + * $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ELLIPSE_H +#define PS_ELLIPSE_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +// strucures to define elliptical shape parameters +typedef struct +{ + double major; // Major axis + double minor; // Minor axis + double theta; // Position angle +} +psEllipseAxes; + +typedef struct +{ + double x2; // Moment of xx + double y2; // Moment of yy + double xy; // Moment of xy +} +psEllipseMoments; + +typedef struct +{ + double sx; // Shape parameter in x + double sy; // Shape parameter in y + double sxy; // Shape parameter in xy +} +psEllipseShape; + +// conversions between elliptical shape representations +psEllipseMoments psEllipseAxesToMoments(psEllipseAxes axes); +psEllipseAxes psEllipseMomentsToAxes(psEllipseMoments moments, double maxAR); +psEllipseShape psEllipseAxesToShape(psEllipseAxes axes); +psEllipseAxes psEllipseShapeToAxes(psEllipseShape shape, double maxAR); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psHistogram.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psHistogram.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psHistogram.c (revision 12167) @@ -0,0 +1,333 @@ +/** @file psHistogram.h + * \brief basic histogram functions + * @ingroup Math + * + * @author GLG (MHPCC), EAM (IfA) + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:01:24 $ + * + * Copyright 2006 IfA, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include "psMemory.h" +#include "psAbort.h" +//#include "psImage.h" +#include "psVector.h" +#include "psTrace.h" +#include "psLogMsg.h" +#include "psError.h" +#include "psStats.h" +#include "psHistogram.h" +#include "psAssert.h" +#include "psMathUtils.h" +//#include "psList.h" +//#include "psString.h" + +static void histogramFree(psHistogram* myHist); + +/****************************************************************************** +psHistogramAlloc(lower, upper, n): allocate a uniform histogram structure +with the specifed upper and lower limits, and the specifed number of bins. +This routine will also set the bounds for each of the bins. + +Input: + lower + upper + n +Returns: + The histogram structure + *****************************************************************************/ +psHistogram* psHistogramAlloc(float lower, float upper, int n) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + psTrace("psLib.math", 5, "(lower, upper, n) is (%f, %f, %d)\n", lower, upper, n); + PS_ASSERT_INT_POSITIVE(n, NULL); + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(upper, lower, NULL); + + // Allocate memory for the new histogram structure. If there are N bins, then there are N+1 bounds to + // those bins. + psHistogram *newHist = (psHistogram* ) psAlloc(sizeof(psHistogram)); // The new histogram structure + psMemSetDeallocator(newHist, (psFreeFunc) histogramFree); + psVector* newBounds = psVectorAlloc(n + 1, PS_TYPE_F32); + newHist->bounds = newBounds; + + // Calculate the bounds for each bin. + psF32 binSize = (upper - lower) / (psF32)n; // The histogram bin size + // XXX: Is the following necessary? It prevents the max data point from being in a non-existant bin. + binSize += FLT_EPSILON; + for (long i = 0; i < n + 1; i++) { + newBounds->data.F32[i] = lower + (binSize * (psF32)i); + } + + // Allocate the bins, and initialize them to zero. + newHist->nums = psVectorAlloc(n, PS_TYPE_F32); + psVectorInit(newHist->nums, 0.0); + + // Initialize the other members. + newHist->minNum = 0; + newHist->maxNum = 0; + newHist->uniform = true; + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return newHist; +} + +/****************************************************************************** +psHistogramAllocGeneric(bounds): allocate a non-uniform histogram structure +with the specifed bounds. + +Input: + bounds +Returns: + The histogram structure + *****************************************************************************/ +psHistogram* psHistogramAllocGeneric(const psVector* bounds) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_VECTOR_NON_NULL(bounds, NULL); + PS_ASSERT_VECTOR_TYPE(bounds, PS_TYPE_F32, NULL); + PS_ASSERT_LONG_LARGER_THAN_OR_EQUAL(bounds->n, (long)2, NULL); + + // Allocate memory for the new histogram structure. + psHistogram *newHist = (psHistogram* ) psAlloc(sizeof(psHistogram)); // The new histogram structure + psMemSetDeallocator(newHist, (psFreeFunc) histogramFree); + psVector* newBounds = psVectorCopy(NULL, bounds, PS_TYPE_F32); + newHist->bounds = newBounds; + + // Allocate the bins, and initialize them to zero. If there are N bounds, + // then there are N-1 bins. + newHist->nums = psVectorAlloc((bounds->n) - 1, PS_TYPE_F32); + psVectorInit(newHist->nums, 0.0); + + // Initialize the other members. + newHist->minNum = 0; + newHist->maxNum = 0; + newHist->uniform = false; + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return (newHist); +} + +static void histogramFree(psHistogram* myHist) +{ + psFree((void *)myHist->bounds); + psFree(myHist->nums); +} + + +bool psMemCheckHistogram(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)histogramFree ); +} + +/***************************************************************************** +UpdateHistogramBins(binNum, out, data, error): This routine is to be used when +updating the histogram in the presence of errors in the input data. We treat +the data point as a boxcar PDF and update a range of points surrounding the +histogram bin which contains the point. The width of that boxcar is defined +as 2.35 * error. + +XXX: Must test this. + *****************************************************************************/ +static bool UpdateHistogramBins(long binNum, // Bin number of the data point + psHistogram* out, // The histogram to be updated + psF32 data, // The data point value + psF32 error // The error in the data point + ) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(out, false); + PS_ASSERT_PTR_NON_NULL(out->bounds, false); + PS_ASSERT_PTR_NON_NULL(out->nums, false); + PS_ASSERT_LONG_WITHIN_RANGE(binNum, (long)0, (long)((out->nums->n)-1), false); + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(error, 0.0, false); + PS_ASSERT_FLOAT_WITHIN_RANGE(data, out->bounds->data.F32[0], + out->bounds->data.F32[(out->bounds->n)-1], false); + + psF32 boxcarWidth = 2.35 * error; // Width of the boxcar + psF32 boxcarCenter = (out->bounds->data.F32[binNum] + + out->bounds->data.F32[binNum+1]) / 2.0; // Centre of the boxcar + psF32 boxcarLeft = boxcarCenter - (boxcarWidth / 2.0); // Left endpoint of the boxcar for the PDF + psF32 boxcarRight = boxcarCenter + (boxcarWidth / 2.0); // Right endpoint of the boxcar for the PDF + psS32 boxcarLeftBinNum = 0; // Bin number for left endpoint + psS32 boxcarRightBinNum = 0; // Bin number for right endpoint + + // Determine the left endpoint of the boxcar for the PDF. + for (long bin = binNum; bin >= 0; bin--) { + if (out->nums->data.F32[bin] <= boxcarLeft) { + boxcarLeftBinNum = bin; + break; + } + } + + // Determine the right endpoint of the boxcar for the PDF. + for (long bin = binNum; bin < out->nums->n; bin++) { + if (out->nums->data.F32[bin] >= boxcarRight) { + boxcarRightBinNum = bin; + break; + } + } + + // If the boxcar fits entirely inside this bin, then simply add 1.0 to the + // bin and return. + if (boxcarLeftBinNum == boxcarRightBinNum) { + out->nums->data.F32[binNum] += 1.0; + psTrace("psLib.math", 3, "---- %s(true) end ----\n", __func__); + return true; + } + + // If we get here, multiple bins must be updated. We handle the left-most endpoint, and right-most + // endpoints differently. + out->nums->data.F32[boxcarLeftBinNum] += + (out->bounds->data.F32[boxcarLeftBinNum+1] - boxcarLeft) / boxcarWidth; + + // Loop through the center bins, if any. + for (long bin = boxcarLeftBinNum + 1; bin < (boxcarRightBinNum - 1); bin++) { + out->nums->data.F32[bin] += + (out->bounds->data.F32[bin+1] - out->bounds->data.F32[bin]) / boxcarWidth; + } + + // Handle the right endpoint differently. + out->nums->data.F32[boxcarRightBinNum]+= + (boxcarRight - out->bounds->data.F32[boxcarRightBinNum]) / boxcarWidth; + + psTrace("psLib.math", 3, "---- %s(true) end ----\n", __func__); + return true; +} + +/***************************************************************************** +psVectorHistogram(out, in, errors, mask, maskVal): this procedure takes as +input a preallocated and initialized histogram structure. It fills the bins +in that histogram structure in accordance with the input data "in" and the, +possibly NULL, mask vector. + +Inputs: + out + in + mask + maskVal +Returns: + The histogram structure "out". + *****************************************************************************/ +bool psVectorHistogram(psHistogram* out, + const psVector* values, + const psVector* errors, + const psVector* mask, + psMaskType maskVal) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(out, false); + PS_ASSERT_VECTOR_NON_NULL(out->bounds, false); + PS_ASSERT_VECTOR_TYPE(out->bounds, PS_TYPE_F32, false); + PS_ASSERT_INT_NONNEGATIVE(out->bounds->n, false); + PS_ASSERT_VECTOR_NON_NULL(out->nums, false); + PS_ASSERT_VECTOR_TYPE(out->nums, PS_TYPE_F32, false); + PS_ASSERT_INT_NONNEGATIVE(out->nums->n, false); + PS_ASSERT_VECTOR_NON_NULL(values, out); + if (mask) { + PS_ASSERT_VECTORS_SIZE_EQUAL(values, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (errors) { + PS_ASSERT_VECTORS_SIZE_EQUAL(values, errors, false); + PS_ASSERT_VECTOR_TYPE(errors, values->type.type, false); + } + + long binNum = 0; // A temporary bin number + long numBins = out->nums->n; // The total number of bins + psScalar tmpScalar; + tmpScalar.type.type = PS_TYPE_F32; + + // Convert input and errors vectors to F32 if necessary. + psVector* inF32 = NULL; // F32 version of input vector + if (values->type.type == PS_TYPE_F32) { + inF32 = psMemIncrRefCounter((psPtr)values); + } else { + inF32 = psVectorCopy(NULL, values, PS_TYPE_F32); + } + psVector* errorsF32 = NULL; // F32 version of errors vector + if (errors) { + if (errors->type.type == PS_TYPE_F32) { + errorsF32 = psMemIncrRefCounter((psPtr)errors); + } else { + errorsF32 = psVectorCopy(NULL, errors, PS_TYPE_F32); + } + } + + for (long i = 0; i < inF32->n; i++) { + // Check if this pixel is masked, and if so, skip it. + if (!mask || (mask && (!(mask->data.U8[i] & maskVal)))) { + if (inF32->data.F32[i] < out->bounds->data.F32[0]) { + // If this pixel is below minimum value, count it, then skip. + out->minNum++; + } else if (inF32->data.F32[i] > out->bounds->data.F32[numBins]) { + // If this pixel is above maximum value, count it, then skip. + out->maxNum++; + } else { + // If this is a uniform histogram, determining the correct + // number is trivial. + if (out->uniform == true) { + float binSize = out->bounds->data.F32[1] - out->bounds->data.F32[0]; // Histogram bin size + binNum = (inF32->data.F32[i] - out->bounds->data.F32[0]) / binSize; + if (errorsF32) { + if (!UpdateHistogramBins(binNum, out, inF32->data.F32[i], errorsF32->data.F32[i])) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: Failed to update the histogram " + "bins with the errors vector.\n"); + } + } else { + // This if-statement really shouldn't be necessary. + // However, due to numerical lack of precision, we + // occasionally produce a binNum outside the range. + if (binNum >= out->nums->n) { + binNum = out->nums->n - 1; + } + (out->nums->data.F32[binNum])+= 1.0; + } + + } else { + // If this is a non-uniform histogram, determining the + // correct bin number requires a bit more work. + tmpScalar.data.F32 = inF32->data.F32[i]; + binNum = p_psVectorBinDisect( *(psVector* *)&out->bounds, &tmpScalar); + if (binNum < 0) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: psVectorHistogram(): element outside histogram bounds.\n"); + } else { + if (errorsF32 != NULL) { + if (!UpdateHistogramBins(binNum, out, inF32->data.F32[i], errors->data.F32[i])) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: Failed to update the histogram " + "bins with the errors vector.\n"); + } + } else { + out->nums->data.F32[binNum] += 1.0; + } + } + } + } + } + } + + psFree(inF32); + psFree(errorsF32); + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return true; +} + Index: /branches/rel-1-1/psLib/src/math/psHistogram.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psHistogram.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psHistogram.h (revision 12167) @@ -0,0 +1,94 @@ +/* @file psHistogram.h + * @brief basic histogram functions + * + * This file holds the definition of the histogram data structures. It also contains + * prototypes for procedures which operate on those data structures. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:01:24 $ + * + * Copyright 2004-2005 IfA, University of Hawaii + */ + +#ifndef PS_HISTOGRAM_H +#define PS_HISTOGRAM_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/****************************************************************************** + Histogram functions and data structures. + *****************************************************************************/ + +/** The basic histogram structure which contains bounds and bins. + * + * In this structure, the vector bounds specifies the boundaries of the + * histogram bins, and must of type psF32, while nums specifies the number + * of entries in the bin, and must of type psU32. The value of bounds.n must + * therefore be 1 greater than than nums.n. The two values minNum and maxNum + * are the number of data values which fell below the lower limit bound or + * above the upper limit bound, respectively. + */ +typedef struct +{ + const psVector* bounds; ///< Bounds for the bins (type F32) + psVector* nums; ///< Number in each of the bins (INT) + int minNum; ///< Number below the minimum + int maxNum; ///< Number above the maximum + bool uniform; ///< Is it a uniform distribution? +} +psHistogram; + +/** Allocator for psHistogram where the bounds of the bins are implicitly + * specified through simply specifying an upper and lower limit along with + * the size of the bins. + * + * @return psHistogram* Newly allocated psHistogram + */ +psHistogram* psHistogramAlloc( + float lower, ///< Lower limit for the bins + float upper, ///< Upper limit for the bins + int n ///< Number of bins +); + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psHistogram structure, false otherwise. + */ +bool psMemCheckHistogram( + psPtr ptr ///< the pointer whose type to check +); + + +/** Allocator for psHistogram where the bounds of the bins are explicitly + * specified. + * + * @return psHistogram* Newly allocated psHistogram + */ +psHistogram* psHistogramAllocGeneric( + const psVector* bounds ///< Bounds for the bins +); + +/** Calculate a histogram + * + * The following function populates the histogram bins from the specified + * vector (in). It alters and returns the histogram out structure. The input + * vector may be of types psU8, psU16, psF32, psF64. + * + * @return bool Successful operation? + */ +bool psVectorHistogram( + psHistogram* out, ///< Histogram data + const psVector* values, ///< Vector to analyse + const psVector* errors, ///< Errors + const psVector* mask, ///< Mask dat for input vector + psMaskType maskVal ///< Mask value +); + +/// @} +#endif // #ifndef PS_HISTOGRAM_H Index: /branches/rel-1-1/psLib/src/math/psMD5.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMD5.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMD5.c (revision 12167) @@ -0,0 +1,80 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psAssert.h" +#include "psMemory.h" +#include "psString.h" +#include "psVector.h" +#include "psImage.h" +#include "psError.h" +#include "psMD5.h" + + +psVector *psStringMD5(const char *string) +{ + psVector *hash = psVectorAlloc(MD5_DIGEST_LENGTH, PS_TYPE_U8); // The resultant MD5 hash + if (!MD5((const unsigned char *)string, strlen(string), &hash->data.U8[0])) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to generate md5 hash.\n"); + psFree(hash); + return NULL; + } + return hash; +} + +psVector *psVectorMD5(const psVector *vector) +{ + PS_ASSERT_VECTOR_NON_NULL(vector, NULL); + + psVector *hash = psVectorAlloc(MD5_DIGEST_LENGTH, PS_TYPE_U8); // The resultant MD5 hash + if (!MD5(vector->data.U8, vector->n * PSELEMTYPE_SIZEOF(vector->type.type), &hash->data.U8[0])) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to generate md5 hash.\n"); + psFree(hash); + return NULL; + } + return hash; +} + + +psVector *psImageMD5(const psImage *image) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + + psVector *hash = psVectorAlloc(MD5_DIGEST_LENGTH, PS_TYPE_U8); // The resultant MD5 hash + if (!image->parent) { + // No parent means image is contiguous + if (!MD5(&image->data.U8[0][0], image->numCols * image->numRows * PSELEMTYPE_SIZEOF(image->type.type), + &hash->data.U8[0])) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to generate md5 hash.\n"); + psFree(hash); + return NULL; + } + } else { + MD5_CTX ctx; // MD5 calculator + MD5_Init(&ctx); + for (int row = 0; row < image->numRows; row++) { + MD5_Update(&ctx, image->data.U8[row], image->numCols * PSELEMTYPE_SIZEOF(image->type.type)); + } + MD5_Final(&hash->data.U8[0], &ctx); + } + + return hash; +} + + +psString psMD5toString(const psVector *hash) +{ + PS_ASSERT_VECTOR_NON_NULL(hash, NULL); + PS_ASSERT_VECTOR_SIZE(hash, (long int)MD5_DIGEST_LENGTH, NULL); + PS_ASSERT_VECTOR_TYPE(hash, PS_TYPE_U8, NULL); + + psString string = psStringAlloc(MD5_DIGEST_LENGTH * 2 + 1); // String to return + for (int i = 0; i < MD5_DIGEST_LENGTH; i++) { + sprintf(string + i * 2, "%02x", hash->data.U8[i]); + } + return string; +} Index: /branches/rel-1-1/psLib/src/math/psMD5.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMD5.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMD5.h (revision 12167) @@ -0,0 +1,42 @@ +/* @file psMD5.h + * @brief support for MD5 hashes + * + * $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_MD5_H +#define PS_MD5_h + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psVector.h" +#include "psString.h" +#include "psImage.h" + +/// Return an MD5 hash of the supplied string. +/// +/// The MD5 hash is returned in a U8 vector of size 16. +psVector *psStringMD5(const char *string ///< String to hash + ); + +/// Return an MD5 hash of the supplied vector. +/// +/// The MD5 hash is returned in a U8 vector of size 16. +psVector *psVectorMD5(const psVector *vector ///< Vector to hash + ); + +/// Return an MD5 hash of the supplied image. +/// +/// The MD5 hash is returned in a U8 vector of size 16. +psVector *psImageMD5(const psImage *image ///< Image to hash + ); + +/// Convert an MD5 hash into a string, for printing. +psString psMD5toString(const psVector *hash ///< Hash to stringify + ); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psMathUtils.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMathUtils.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMathUtils.c (revision 12167) @@ -0,0 +1,305 @@ +/** @file psMathUtils.c + * + * This file contains standard math routines. + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:53 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include +#include +#include "psMemory.h" +#include "psVector.h" +#include "psScalar.h" +#include "psTrace.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psPolynomial.h" +#include "psMathUtils.h" +#include "psAssert.h" +#include "psConstants.h" + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +/***************************************************************************** +This is a macro covering the various types for the below function. + *****************************************************************************/ +#define VECTOR_BIN_DISECT_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + ps##TYPE *bounds = bins->data.TYPE; \ + ps##TYPE value = x->data.TYPE; \ + long min; \ + long max; \ + long mid; \ + psTrace("psLib.math", 4, "---- () begin ----\n"); \ + /* psTrace("psLib.math", 6, "Determining the bin for: %f\n", x); */\ + if (value < bounds[0]) { \ + psLogMsg(__func__, PS_LOG_WARN, \ + "vectorBinDisect%s(): ordinate %f is outside vector range (%f - %f).", \ + #TYPE, (double)value, (double)bounds[0], (double)bounds[numBins-1]); \ + return(-2); \ + } \ + if (value > bounds[numBins-1]) { \ + psLogMsg(__func__, PS_LOG_WARN, \ + "vectorBinDisect%s(): ordinate %f is outside vector range (%f - %f).", \ + #TYPE, (double)value, (double)bounds[0], (double)bounds[numBins-1]); \ + return(-1); \ + } \ + \ + min = 0; \ + max = numBins-2; \ + mid = ((max+1)-min)/2; \ + while (min != max) { \ + \ + if (value == bounds[mid]) { \ + psTrace("psLib.math", 4, "---- %s(%ld) end (1) ----\n", __func__, mid); \ + return(mid); \ + } else if (value < bounds[mid]) { \ + max = mid-1; \ + } else { \ + min = mid; \ + } \ + mid = ((max+1)+min)/2; \ + } \ + psTrace("psLib.math", 4, "---- %s(%ld) end (2) ----\n", __func__, min); \ + return(min); \ +} + +/***************************************************************************** +p_psVectorBinDisect(): This function takes as input an array of data as well as a single value for that data. +The input vector values are assumed to be non-decreasing (v[i-1] <= v[i] for all i). This routine does a +binary disection of the vector and returns "i" such that (v[i] <= x <= v[i+1). If x lies outside the range of +v[], then this routine prints a warning message and returns (-2 or -1). + *****************************************************************************/ +psS32 p_psVectorBinDisect( + const psVector *bins, + const psScalar *x) +{ + PS_ASSERT_VECTOR_NON_NULL(bins, -4); + PS_ASSERT_VECTOR_NON_EMPTY(bins, -4); + PS_ASSERT_PTR_NON_NULL(x, -6); + PS_ASSERT_PTR_TYPE_EQUAL(x, bins, -3); + long numBins = bins->n; // Number of bins + + switch (x->type.type) { + VECTOR_BIN_DISECT_CASE(S8); + VECTOR_BIN_DISECT_CASE(S16); + VECTOR_BIN_DISECT_CASE(S32); + VECTOR_BIN_DISECT_CASE(S64); + VECTOR_BIN_DISECT_CASE(U8); + VECTOR_BIN_DISECT_CASE(U16); + VECTOR_BIN_DISECT_CASE(U32); + VECTOR_BIN_DISECT_CASE(U64); + VECTOR_BIN_DISECT_CASE(F32); + VECTOR_BIN_DISECT_CASE(F64); + default: { + char* strType; + PS_TYPE_NAME(strType, x->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, "psLib type %s is not supported.", strType); + return -1; + } + } + return(-3); +} + + +/************************************************************************************************************* +Helper macro for p_psVectorInterpolate: handles each of the types +*************************************************************************************************************/ +#define VECTOR_INTERPOLATE_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + psTrace("psLib.math", 4, "---- %s() begin %u-order.) (%d data points) ----\n", __func__, order, order+1); \ + if (x->data.TYPE < domain->data.TYPE[0]) { \ + psLogMsg(__func__, PS_LOG_WARN, "WARNING: x is outside the domain of input data.\n"); \ + out->data.TYPE = range->data.TYPE[0]; \ + return(out); \ + } \ + if (x->data.TYPE > domain->data.TYPE[domain->n-1]) { \ + psLogMsg(__func__, PS_LOG_WARN, "WARNING: x is outside the domain of input data.\n"); \ + out->data.TYPE = range->data.TYPE[domain->n-1]; \ + return(out); \ + } \ + psVector *p = psVectorCopy(NULL, range, PS_TYPE_##TYPE); \ + psS32 binNum = p_psVectorBinDisect(domain, x); \ + \ + psS32 numIntPoints = order+1; \ + psS32 origin; \ + if (0 == numIntPoints%2) { \ + origin = binNum - ((numIntPoints/2) - 1); \ + } else { \ + origin = binNum - (numIntPoints/2); \ + if ((x->data.TYPE-domain->data.TYPE[binNum]) > (domain->data.TYPE[binNum+1]-x->data.TYPE)) { \ + /* x is closer to binNum+1. */\ + origin = 1 + (binNum - (numIntPoints/2)); \ + } \ + } \ + origin = PS_MAX(origin, 0); \ + origin = PS_MIN(origin, (domain->n - numIntPoints)); \ + \ + /* From NR, during each iteration of the m loop, we are computing the p_{i ... i+m} terms. */ \ + for (psU32 m = 1 ; m < numIntPoints ; m++) { \ + for (psU32 i = origin ; i < (numIntPoints+origin-m) ; i++) { \ + p->data.TYPE[i] = (((x->data.TYPE - domain->data.TYPE[i+m]) * p->data.TYPE[i]) + \ + ((domain->data.TYPE[i] - x->data.TYPE) * p->data.TYPE[i+1])) / \ + (domain->data.TYPE[i] - domain->data.TYPE[i+m]); \ + } \ + } \ + out->data.TYPE = p->data.TYPE[origin]; \ + psFree(p); \ + psTrace("psLib.math", 4, "---- %s(....) end ----\n", __func__); \ + return(out); \ +} + +/***************************************************************************** +p_psVectorInterpolate(): This routine will take as input psVectors domain and +range, and the x value, assumed to lie with the domain vector. It produces +as output the LaGrange interpolated value of a polynomial of the specified +order around the point x. + +XXX: This stuff does not currently work with a mask. + *****************************************************************************/ +psScalar *p_psVectorInterpolate( + psScalar *out, + const psVector *domain, + const psVector *range, + psS32 order, + const psScalar *x) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_VECTOR_NON_NULL(domain, NULL); + PS_ASSERT_VECTOR_NON_NULL(range, NULL); + PS_ASSERT_PTR_NON_NULL(x, NULL); + PS_ASSERT_INT_NONNEGATIVE(order, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(domain, range, NULL); + PS_ASSERT_PTR_TYPE_EQUAL(domain, range, NULL); + PS_ASSERT_PTR_TYPE_EQUAL(domain, x, NULL); + if (!out) { + out = psScalarAlloc(0, x->type.type); + } else { + PS_ASSERT_PTR_TYPE_EQUAL(domain, out, NULL); + } + + switch (x->type.type) { + VECTOR_INTERPOLATE_CASE(U8); + VECTOR_INTERPOLATE_CASE(U16); + VECTOR_INTERPOLATE_CASE(U32); + VECTOR_INTERPOLATE_CASE(U64); + VECTOR_INTERPOLATE_CASE(S8); + VECTOR_INTERPOLATE_CASE(S16); + VECTOR_INTERPOLATE_CASE(S32); + VECTOR_INTERPOLATE_CASE(S64); + VECTOR_INTERPOLATE_CASE(F32); + VECTOR_INTERPOLATE_CASE(F64); + default: { + char* strType; + PS_TYPE_NAME(strType, x->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, "psLib type %s is not supported.", strType); + return NULL; + } + } + + return NULL; +} + +/***************************************************************************** +Helper macro for p_psNormalizeVectorRange: handles each of the types + *****************************************************************************/ +#define NORMALIZE_VECTOR_RANGE_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + ps##TYPE low = outLow; \ + ps##TYPE high = outHigh; \ + ps##TYPE min = (ps##TYPE)PS_MAX_##TYPE; \ + ps##TYPE max = (ps##TYPE)-PS_MAX_##TYPE; \ + \ + for (long i = 0; i < myData->n; i++) { \ + if (myData->data.TYPE[i] < min) { \ + min = myData->data.TYPE[i]; \ + } \ + if (myData->data.TYPE[i] > max) { \ + max = myData->data.TYPE[i]; \ + } \ + } \ + \ + /* Ensure that max!=min before we divide by (max-min) */ \ + if (max != min) { \ + for (long i = 0; i < myData->n; i++) { \ + myData->data.TYPE[i] = (low + (myData->data.TYPE[i] - min) * \ + (high - low) / (max - min)); \ + } \ + } else { \ + psLogMsg(__func__, PS_LOG_WARN, "WARNING: (max==min). Setting all elements to min.\n"); \ + for (long i = 0; i < myData->n; i++) \ + { \ + \ + myData->data.TYPE[i] = low; \ + \ + } \ + } \ + break; \ +} \ + +/************************************************************************************************************* +p_psNormalizeVectorRange(myData, low, high): this function normalises the vector (myData) to the range +low: +high. +*************************************************************************************************************/ +bool p_psNormalizeVectorRange(psVector* myData, + psF64 outLow, + psF64 outHigh) +{ + PS_ASSERT_VECTOR_NON_NULL(myData, false); + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + + switch (myData->type.type) { + NORMALIZE_VECTOR_RANGE_CASE(U8); + NORMALIZE_VECTOR_RANGE_CASE(U16); + NORMALIZE_VECTOR_RANGE_CASE(U32); + NORMALIZE_VECTOR_RANGE_CASE(U64); + NORMALIZE_VECTOR_RANGE_CASE(S8); + NORMALIZE_VECTOR_RANGE_CASE(S16); + NORMALIZE_VECTOR_RANGE_CASE(S32); + NORMALIZE_VECTOR_RANGE_CASE(S64); + NORMALIZE_VECTOR_RANGE_CASE(F32); + NORMALIZE_VECTOR_RANGE_CASE(F64); + default: { + char* strType; + PS_TYPE_NAME(strType, myData->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, "psLib type %s is not supported.", strType); + break; + } + } + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return true; +} + + Index: /branches/rel-1-1/psLib/src/math/psMathUtils.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMathUtils.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMathUtils.h (revision 12167) @@ -0,0 +1,55 @@ +/* @file psMathUtils.h + * @brief Standard Mathematical Functions. + * + * This file contains standard math rotines. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_MATHUTILS_H +#define PS_MATHUTILS_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include +#include +#include +#include +#include "psVector.h" +#include "psScalar.h" +#include "psPolynomial.h" + +/** Performs a binary disection on a monotonically non-decreasing vector. + * Searches through an array of data for a specified value. + * + * @return psS32 corresponding index number of specified value + */ +psS32 p_psVectorBinDisect( + const psVector *bins, ///< Array of non-decreasing values + const psScalar *x ///< Target value to find +); + +/** Interpolates a series of data points for evaluation at a specific coordinate. Uses a + * Lagrange interpolation method. + * + * @return psScalar* Lagrange interpolation value at given location + */ +psScalar *p_psVectorInterpolate( + psScalar *out, ///< Output scalar, or NULL + const psVector *domain, ///< Domain (x coords) for interpolation + const psVector *range, ///< Range (y coords) for interpolation + psS32 order, ///< Order of interpolation function + const psScalar *x ///< Location at which to evaluate +); + +bool p_psNormalizeVectorRange(psVector* myData, + psF64 outLow, + psF64 outHigh); + +/// @} +#endif // #ifndef PS_MATHUTILS_H Index: /branches/rel-1-1/psLib/src/math/psMatrix.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMatrix.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMatrix.c (revision 12167) @@ -0,0 +1,928 @@ +/** @file psMatrix.c + * + * @brief Provides functions for linear algebra operations on psImages and psVectors. + * + * Functions are provided to: + * Transpose a psImage + * Compute LUD + * Solve LUD + * Matrix inversion + * Calculate determinant + * Matrix addition + * Matrix subtraction + * Matrix multiplication + * Calculate Eigenvectors + * Convert matrix to vector + * Convert vector to matrix + * + * These functions treat psImages as if they were matrices, therefore there is no psMatrix. + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * @author Andy Becker, University of Washington (SVD). + * + * @version $Revision: 1.47 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:53 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/******************************************************************************/ +/* INCLUDE FILES */ +/******************************************************************************/ +#include +#include +#include +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psImage.h" +#include "psVector.h" +#include "psMatrix.h" +#include "psAssert.h" + +#include "psTrace.h" + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/** Preprocessor macro to generate error for image dimensionality not set to PS_DIMEN_IMAGE */ +#define PS_CHECK_DIMEN_AND_TYPE(NAME, PS_DIMEN, CLEANUP) \ +if (NAME->type.dimen != PS_DIMEN) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Invalid operation. %s has incorrect dimensionality %d.", #NAME, PS_DIMEN); \ + CLEANUP; \ +} else if(NAME->type.type!=PS_TYPE_F64 && NAME->type.type!=PS_TYPE_F32) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Invalid operation. %s not PS_TYPE_F64.", #NAME); \ + CLEANUP; \ +} + +/** Preprocessor macro to check that input is not equal to output */ +#define PS_CHECK_POINTERS(NAME1, NAME2, CLEANUP) \ +if (NAME1 == NAME2) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Invalid operation: Pointer to %s is same as %s.", #NAME1, #NAME2); \ + CLEANUP; \ +} + +/** Preprocessor macro to check that an image is square */ +#define PS_CHECK_SQUARE(NAME, CLEANUP) \ +if (NAME->numCols != NAME->numRows) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid operation: %s not square array.", #NAME); \ + CLEANUP; \ +} + +/** Preprocessor macro to initalize a GSL matrix. */ +#define PS_GSL_MATRIX_INITIALIZE(LHS_NAME, RHS_NAME) \ +LHS_NAME.size1 = numRows; \ +LHS_NAME.size2 = numCols; \ +LHS_NAME.tda = numCols; \ +LHS_NAME.data = RHS_NAME; + + +/*****************************************************************************/ +/* FILE STATIC FUNCTIONS */ +/*****************************************************************************/ + +static void psVectorToGslVector(gsl_vector *outGslVector, const psVector *inVector); +static void gslVectorToPsVector(psVector *outVector, gsl_vector *inGslVector); +static void psImageToGslMatrix(gsl_matrix *outGslMatrix, const psImage *inImage); +static void gslMatrixToPsImage(psImage *outImage, gsl_matrix *inGslMatrix); + +/** Static function to copy psF32 or psF64 vector data to a GSL vector */ +static void psVectorToGslVector(gsl_vector *outGslVector, + const psVector *inVector) +{ + psU32 i = 0; + psU32 n = 0; + + + n = inVector->n; + for(i=0; itype.type == PS_TYPE_F32) { + outGslVector->data[i] = (psF64)inVector->data.F32[i]; + } else { + outGslVector->data[i] = inVector->data.F64[i]; + } + } +} + +/** Static function to copy GSL vector data to a psF32 or psF64 vector */ +static void gslVectorToPsVector(psVector *outVector, + gsl_vector *inGslVector) +{ + psU32 i = 0; + psU32 n = 0; + + + n = outVector->n; + for(i=0; itype.type == PS_TYPE_F32) { + outVector->data.F32[i] = (psF32)inGslVector->data[i]; + } else { + outVector->data.F64[i] = inGslVector->data[i]; + } + } +} + +/** Static function to copy psF32 or psF64 image data to a GSL matrix */ +static void psImageToGslMatrix(gsl_matrix *outGslMatrix, + const psImage *inImage) +{ + psU32 i = 0; + psU32 j = 0; + psU32 numRows = 0; + psU32 numCols = 0; + + + numRows = inImage->numRows; + numCols = inImage->numCols; + if(inImage->type.type == PS_TYPE_F32) { + for(i=0; idata[i*numCols+j] = inImage->data.F32[i][j]; + } + } + } else { + for(i=0; idata[i*numCols+j] = inImage->data.F64[i][j]; + } + } + } +} + +/** Static function to copy GSL matrix data to a psF32 or psF64 image */ +static void gslMatrixToPsImage(psImage *outImage, + gsl_matrix *inGslMatrix) +{ + psU32 i = 0; + psU32 j = 0; + psU32 numRows = 0; + psU32 numCols = 0; + + + numRows = outImage->numRows; + numCols = outImage->numCols; + if(outImage->type.type == PS_TYPE_F32) { + for(i=0; idata.F32[i][j] = inGslMatrix->data[i*numCols+j]; + } + } + } else { + for(i=0; idata.F64[i][j] = inGslMatrix->data[i*numCols+j]; + } + } + } +} + + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +psImage* psMatrixLUD(psImage* out, + psVector** perm, + const psImage* in) +{ + psS32 signum = 0; + psS32 numRows = 0; + psS32 numCols = 0; + gsl_matrix *lu = NULL; + gsl_permutation permGSL; + + + #define psMatrixLUD_EXIT {psFree(out); return NULL;} + + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, psMatrixLUD_EXIT); + PS_CHECK_POINTERS(in, out, psMatrixLUD_EXIT); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, psMatrixLUD_EXIT); + PS_ASSERT_GENERAL_PTR_NON_NULL(perm, psMatrixLUD_EXIT); + + out = psImageRecycle(out, in->numCols, in->numRows, in->type.type); + + PS_CHECK_SQUARE(in, psMatrixLUD_EXIT); // gsl_linalg_LU_decomp would fail on non-square input. + PS_CHECK_SQUARE(out, psMatrixLUD_EXIT); + + // Initialize data + numRows = in->numRows; + numCols = in->numCols; + + // Initialize GSL data + permGSL.size = numCols; + if (sizeof(size_t) == 4) { + *perm = psVectorRecycle(*perm, numCols, PS_TYPE_S32); + } else if (sizeof(size_t) == 8) { + *perm = psVectorRecycle(*perm, numCols, PS_TYPE_S64); + } else { + psError(PS_ERR_UNKNOWN, true, + "Failed to allocate the permutation vector; " + "could not determine the cooresponding data type."); + psMatrixLUD_EXIT; + } + + (*perm)->n = numCols; + permGSL.data = (psPtr)((*perm)->data.U8); + lu = gsl_matrix_alloc(numRows, numCols); + + // Copy psImage data into GSL matrix data + psImageToGslMatrix(lu, in); + + // Calculate LU decomposition + gsl_linalg_LU_decomp(lu, &permGSL, &signum); // N.B., uses Gaussian Elimination with partial pivoting. + + // Copy GSL matrix data to psImage data + gslMatrixToPsImage(out, lu); + + // Free GSL data + gsl_matrix_free(lu); + + return out; +} + +psVector* psMatrixLUSolve(psVector* out, + const psImage* LU, + const psVector* RHS, + const psVector* perm) +{ + psS32 numRows = 0; + psS32 numCols = 0; + gsl_matrix *lu; + gsl_permutation permGSL; + gsl_vector *b = NULL; + gsl_vector *x = NULL; + + #define LUSOLVE_CLEANUP {psFree(out); return NULL;} + + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(LU, LUSOLVE_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(LU, PS_DIMEN_IMAGE, LUSOLVE_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(LU, LUSOLVE_CLEANUP); + PS_ASSERT_GENERAL_VECTOR_NON_NULL(RHS, LUSOLVE_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(RHS, PS_DIMEN_VECTOR, LUSOLVE_CLEANUP); + PS_ASSERT_GENERAL_VECTOR_NON_NULL(perm, LUSOLVE_CLEANUP); + + out = psVectorRecycle(out, LU->numRows, LU->type.type); + + PS_CHECK_POINTERS(out, RHS, LUSOLVE_CLEANUP); + PS_CHECK_POINTERS(RHS, perm, LUSOLVE_CLEANUP); + PS_CHECK_POINTERS(out, perm, LUSOLVE_CLEANUP); + + // Initialize data + numRows = LU->numRows; + numCols = LU->numCols; + + // Initialize GSL data + lu = gsl_matrix_alloc(numRows, numCols); + psImageToGslMatrix(lu, LU); + b = gsl_vector_alloc(RHS->n); + psVectorToGslVector(b, RHS); + x = gsl_vector_alloc(RHS->n); + + out->n = numCols; + permGSL.size = perm->n; + permGSL.data = (psPtr)(perm->data.U8); + + // Solve for {x} in equation: {b} = [A]{x} + gsl_linalg_LU_solve(lu, &permGSL, b, x); + + // Copy GSL vector data to psVector data + gslVectorToPsVector(out, x); + + // Free GSL data + gsl_vector_free(b); + gsl_vector_free(x); + gsl_matrix_free(lu); + + return out; +} + +// This is a temporary gauss-jordan solver based on gene's +// version based on the Numerical Recipes version +bool psMatrixGJSolve(psImage *a, + psVector *b + ) +{ + PS_ASSERT_IMAGE_NON_NULL(a, false); + PS_ASSERT_VECTOR_NON_NULL(b, false); + PS_ASSERT_IMAGE_TYPE(a, PS_TYPE_F64, false); + PS_ASSERT_VECTOR_TYPE(b, PS_TYPE_F64, false); + PS_ASSERT_INT_EQUAL(a->numCols, a->numRows, false); + int Nx = a->numCols; + PS_ASSERT_VECTOR_SIZE(b, (long int)Nx, false); + + psF64 *vector = b->data.F64; + psF64 **matrix = a->data.F64; + int *indxc = psAlloc(Nx*sizeof(int)); + int *indxr = psAlloc(Nx*sizeof(int)); + int *ipiv = psAlloc(Nx*sizeof(int)); + memset(ipiv, 0, Nx*sizeof(int)); + + int irow = 0; + int icol = 0; + + for (int i = 0; i < Nx; i++) { + double big = 0.0; + for (int j = 0; j < Nx; j++) { + if (!isfinite(matrix[i][j])) { + psError(PS_ERR_BAD_PARAMETER_VALUE, 3, + "Input matrix contains non-finite elements: matrix[%d][%d] is %.2f\n", + i, j, matrix[i][j]); + goto fescape; + } + if (ipiv[j] != 1) { + for (int k = 0; k < Nx; k++) { + if (ipiv[k] == 0) { + if (fabs(matrix[j][k]) >= big) { + big = fabs(matrix[j][k]); + irow = j; + icol = k; + } + } else { + if (ipiv[k] > 1) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Singular Matrix (1).\n"); + psTrace("psLib.math", 4, "Singular Matrix (1).\n"); + goto fescape; + } + } + } + } + } + ipiv[icol]++; + if (irow != icol) { + for (int l = 0; l < Nx; l++) { + PS_SWAP(matrix[irow][l], matrix[icol][l]); + } + PS_SWAP(vector[irow], vector[icol]); + } + indxr[i] = irow; + indxc[i] = icol; + if (matrix[icol][icol] == 0.0) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Singular Matrix (2).\n"); + psTrace (__func__, 4, "Singular Matrix (2).\n"); + goto fescape; + } + double pivinv = 1.0 / matrix[icol][icol]; + matrix[icol][icol] = 1.0; + for (int l = 0; l < Nx; l++) { + matrix[icol][l] *= pivinv; + } + vector[icol] *= pivinv; + + for (int ll = 0; ll < Nx; ll++) { + if (ll != icol) { + double dum = matrix[ll][icol]; + matrix[ll][icol] = 0.0; + for (int l = 0; l < Nx; l++) { + matrix[ll][l] -= matrix[icol][l]*dum; + } + vector[ll] -= vector[icol]*dum; + } + } + } + + for (int l = Nx - 1; l >= 0; l--) { + if (indxr[l] != indxc[l]) { + for (int k = 0; k < Nx; k++) { + PS_SWAP(matrix[k][indxr[l]], matrix[k][indxc[l]]); + } + } + } + psFree(ipiv); + psFree(indxr); + psFree(indxc); + return true; + +fescape: + psFree(ipiv); + psFree(indxr); + psFree(indxc); + return false; +} + +// This is a temporary gauss-jordan solver based on gene's +// version based on the Numerical Recipes version +bool psMatrixGJSolveF32(psImage *a, + psVector *b + ) +{ + PS_ASSERT_IMAGE_NON_NULL(a, false); + PS_ASSERT_VECTOR_NON_NULL(b, false); + PS_ASSERT_IMAGE_TYPE(a, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(b, PS_TYPE_F32, false); + PS_ASSERT_INT_EQUAL(a->numCols, a->numRows, false); + int Nx = a->numCols; + PS_ASSERT_VECTOR_SIZE(b, (long int)Nx, false); + + psF32 *vector = b->data.F32; + psF32 **matrix = a->data.F32; + int *indxc = psAlloc(Nx*sizeof(int)); + int *indxr = psAlloc(Nx*sizeof(int)); + int *ipiv = psAlloc(Nx*sizeof(int)); + memset(ipiv, 0, Nx*sizeof(int)); + + int irow = 0; + int icol = 0; + + for (int i = 0; i < Nx; i++) { + double big = 0.0; + for (int j = 0; j < Nx; j++) { + if (!isfinite(matrix[i][j])) { + psError(PS_ERR_BAD_PARAMETER_VALUE, 3, + "Input matrix contains non-finite elements: matrix[%d][%d] is %.2f\n", + i, j, matrix[i][j]); + goto fescape; + } + if (ipiv[j] != 1) { + for (int k = 0; k < Nx; k++) { + if (ipiv[k] == 0) { + if (fabs(matrix[j][k]) >= big) { + big = fabs(matrix[j][k]); + irow = j; + icol = k; + } + } else { + if (ipiv[k] > 1) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Singular Matrix (1).\n"); + psTrace("psLib.math", 4, "Singular Matrix (1).\n"); + goto fescape; + } + } + } + } + } + ipiv[icol]++; + if (irow != icol) { + for (int l = 0; l < Nx; l++) { + PS_SWAP(matrix[irow][l], matrix[icol][l]); + } + PS_SWAP(vector[irow], vector[icol]); + } + indxr[i] = irow; + indxc[i] = icol; + if (matrix[icol][icol] == 0.0) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Singular Matrix (2).\n"); + psTrace (__func__, 4, "Singular Matrix (2).\n"); + goto fescape; + } + double pivinv = 1.0 / matrix[icol][icol]; + matrix[icol][icol] = 1.0; + for (int l = 0; l < Nx; l++) { + matrix[icol][l] *= pivinv; + } + vector[icol] *= pivinv; + + for (int ll = 0; ll < Nx; ll++) { + if (ll != icol) { + double dum = matrix[ll][icol]; + matrix[ll][icol] = 0.0; + for (int l = 0; l < Nx; l++) { + matrix[ll][l] -= matrix[icol][l]*dum; + } + vector[ll] -= vector[icol]*dum; + } + } + } + + for (int l = Nx - 1; l >= 0; l--) { + if (indxr[l] != indxc[l]) { + for (int k = 0; k < Nx; k++) { + PS_SWAP(matrix[k][indxr[l]], matrix[k][indxc[l]]); + } + } + } + psFree(ipiv); + psFree(indxr); + psFree(indxc); + return true; + +fescape: + psFree(ipiv); + psFree(indxr); + psFree(indxc); + return false; +} + +psImage* psMatrixInvert(psImage* out, + const psImage* in, + float *determinant) +{ + psS32 signum = 0; + psS32 numRows = 0; + psS32 numCols = 0; + gsl_matrix *inv = NULL; + gsl_matrix *lu = NULL; + gsl_permutation *perm = NULL; + + #define INVERT_CLEANUP { psFree(out); return NULL; } + // Error checks + PS_ASSERT_GENERAL_PTR_NON_NULL(determinant, INVERT_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, INVERT_CLEANUP); + PS_CHECK_POINTERS(in, out, INVERT_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, INVERT_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in, INVERT_CLEANUP); + + out = psImageRecycle(out, in->numCols, in->numRows, in->type.type); + + PS_CHECK_SQUARE(in, INVERT_CLEANUP); + PS_CHECK_SQUARE(out, INVERT_CLEANUP); + + // Initialize data + numRows = in->numRows; + numCols = in->numCols; + + // Initialize GSL data + perm = gsl_permutation_alloc(numRows); + lu = gsl_matrix_alloc(numRows, numCols); + inv = gsl_matrix_alloc(numRows, numCols); + psImageToGslMatrix(lu, in); + + // Invert data and calculate determinant + gsl_linalg_LU_decomp(lu, perm, &signum); + gsl_linalg_LU_invert(lu, perm, inv); + *determinant = (float)gsl_linalg_LU_det(lu, signum); + + // Copy GSL matrix data to psImage data + gslMatrixToPsImage(out, inv); + + // Free GSL structs + gsl_permutation_free(perm); + gsl_matrix_free(lu); + gsl_matrix_free(inv); + + return out; +} + +float psMatrixDeterminant(const psImage* in) +{ + psS32 signum = 0; + psS32 numRows = 0; + psS32 numCols = 0; + psF32 det = 0; + gsl_matrix *lu = NULL; + gsl_permutation *perm = NULL; + + #define DETERMINANT_EXIT { return 0; } + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, DETERMINANT_EXIT); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, DETERMINANT_EXIT); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in, DETERMINANT_EXIT); + PS_CHECK_SQUARE(in, DETERMINANT_EXIT); + + // Initialize data + numRows = in->numRows; + numCols = in->numCols; + + // Allocate GSL structs + perm = gsl_permutation_alloc(numRows); + lu = gsl_matrix_alloc(numRows, numCols); + psImageToGslMatrix(lu, in); + + // Calculate determinant + // det = psAlloc(sizeof(psF32)); + gsl_linalg_LU_decomp(lu, perm, &signum); + det = (psF32)gsl_linalg_LU_det(lu, signum); + + // Free GSL structs + gsl_permutation_free(perm); + gsl_matrix_free(lu); + + return det; +} + +psImage* psMatrixMultiply(psImage* out, + const psImage* in1, + const psImage* in2) +{ + gsl_matrix *m1 = NULL; + gsl_matrix *m2 = NULL; + gsl_matrix *m3 = NULL; + + #define MULTIPLY_CLEANUP { psFree(out); return NULL; } + + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in1, MULTIPLY_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in2, MULTIPLY_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in1, MULTIPLY_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in2, MULTIPLY_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(in1, PS_DIMEN_IMAGE, MULTIPLY_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(in2, PS_DIMEN_IMAGE, MULTIPLY_CLEANUP); + PS_CHECK_POINTERS(in1, out, MULTIPLY_CLEANUP); + PS_CHECK_POINTERS(in1, in2, MULTIPLY_CLEANUP); + + if (in1->numRows != in2->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid operation: number of rows of in1 != number of cols of in2."); + MULTIPLY_CLEANUP; + } + if (in1->type.type != in2->type.type) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid operation: data types of in1 and in2 must match."); + MULTIPLY_CLEANUP; + } + + out = psImageRecycle(out, in2->numCols, in1->numRows, in2->type.type); + + // Initialize GSL data + m1 = gsl_matrix_alloc(in1->numRows, in1->numCols); + psImageToGslMatrix(m1, in1); + m2 = gsl_matrix_alloc(in2->numRows, in2->numCols); + psImageToGslMatrix(m2, in2); + m3 = gsl_matrix_alloc(out->numRows, out->numCols); + + // Perform multiplication + // gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, m1, m2, 0.0, m3); + gsl_linalg_matmult(m1, m2, m3); + + // Copy GSL matrix data to psImage data + gslMatrixToPsImage(out, m3); + + // Free GSL structs + gsl_matrix_free(m1); + gsl_matrix_free(m2); + gsl_matrix_free(m3); + + return out; +} + +psImage* psMatrixTranspose(psImage* out, + const psImage* in) +{ + psU32 i = 0; + psU32 j = 0; + psS32 numRowsIn = 0; + psS32 numColsIn = 0; + psS32 numRowsOut = 0; + psS32 numColsOut = 0; + + #define TRANSPOSE_CLEANUP { psFree(out); return NULL; } + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, TRANSPOSE_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, TRANSPOSE_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in, TRANSPOSE_CLEANUP); + PS_CHECK_POINTERS(in, out, TRANSPOSE_CLEANUP); + + out = psImageRecycle(out, in->numCols, in->numRows, in->type.type); + + // Initialize data + numRowsIn = in->numRows; + numColsIn = in->numCols; + numRowsOut = out->numRows; + numColsOut = out->numCols; + + if(numRowsIn!=numColsOut && numRowsOut!=numColsIn) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Number of rows do not match number of columns.")); + TRANSPOSE_CLEANUP; + } + + if(out->type.type == PS_TYPE_F32) { + for(i=0; idata.F32[i][j] = in->data.F32[j][i]; + } + } + } else { + for(i=0; idata.F64[i][j] = in->data.F64[j][i]; + } + } + } + + return out; +} + +psImage* psMatrixEigenvectors(psImage* out, + const psImage* in) +{ + psS32 numRows = 0; + psS32 numCols = 0; + gsl_vector *eVals = NULL; + gsl_eigen_symmv_workspace *w = NULL; + gsl_matrix *outGSL = NULL; + gsl_matrix *inGSL = NULL; + + #define EIGENVECTORS_CLEANUP { psFree(out); return NULL; } + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, EIGENVECTORS_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, EIGENVECTORS_CLEANUP); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(in, EIGENVECTORS_CLEANUP); + PS_CHECK_POINTERS(in, out, EIGENVECTORS_CLEANUP); + + out = psImageRecycle(out, in->numCols, in->numRows, in->type.type); + + // Initialize data + numRows = in->numRows; + numCols = in->numCols; + + inGSL = gsl_matrix_alloc(numRows, numCols); + psImageToGslMatrix(inGSL, in); + outGSL = gsl_matrix_alloc(numRows, numCols); + + // Allocate GSL structs + eVals = gsl_vector_alloc(numRows); + w = gsl_eigen_symmv_alloc(numRows); + + // Non-square matrices not allowed + PS_CHECK_SQUARE(in, EIGENVECTORS_CLEANUP); + PS_CHECK_SQUARE(out, EIGENVECTORS_CLEANUP); + + // Calculate Eigenvalues and Eigenvectors...Eigenvalues not currently used + gsl_eigen_symmv(inGSL, eVals, outGSL, w); + + // Copy GSL matrix data to psImage data + gslMatrixToPsImage(out, outGSL); + + // Free GSL structs + gsl_matrix_free(inGSL); + gsl_matrix_free(outGSL); + gsl_eigen_symmv_free(w); + gsl_vector_free(eVals); + + return out; +} + +psVector* psMatrixToVector(psVector* outVector, + const psImage* inImage) +{ + psS32 size = 0; + + #define psMatrixToVector_EXIT {psFree(outVector); return NULL;} + + // Error checks + PS_ASSERT_GENERAL_IMAGE_NON_NULL(inImage, psMatrixToVector_EXIT); + PS_CHECK_DIMEN_AND_TYPE(inImage, PS_DIMEN_IMAGE, psMatrixToVector_EXIT); + PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(inImage, psMatrixToVector_EXIT); + + if (inImage->numRows == 1) { + // Create transposed row vector + outVector = psVectorRecycle(outVector, inImage->numCols, inImage->type.type); + outVector->type.dimen = PS_DIMEN_TRANSV; + } else if (inImage->numCols == 1) { + // Create non-transposed column vector + outVector = psVectorRecycle(outVector, inImage->numRows, inImage->type.type); + } else { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image does not have dim with 1 col or 1 row: (%d x %d).", + inImage->numRows, inImage->numCols); + psMatrixToVector_EXIT; + } + + // More checks + if (outVector->type.dimen == PS_DIMEN_VECTOR) { + PS_CHECK_DIMEN_AND_TYPE(outVector, PS_DIMEN_VECTOR, psMatrixToVector_EXIT); + + if (outVector->n == 0) { + outVector->n = inImage->numRows; + } + + if (outVector->n != inImage->numRows) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image and vector sizes differ: (%d vs %ld).", + inImage->numRows, outVector->n); + psMatrixToVector_EXIT; + } + + size = PSELEMTYPE_SIZEOF(inImage->type.type) * inImage->numRows; + + } else if (outVector->type.dimen == PS_DIMEN_TRANSV) { + PS_CHECK_DIMEN_AND_TYPE(outVector, PS_DIMEN_TRANSV, psMatrixToVector_EXIT); + + if (outVector->n == 0) { + outVector->n = inImage->numCols; + } + + if (outVector->n != inImage->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image and vector sizes differ: (%d vs %ld).", + inImage->numCols, outVector->n); + psMatrixToVector_EXIT; + } + + size = PSELEMTYPE_SIZEOF(inImage->type.type) * inImage->numCols; + } + + memcpy(outVector->data.U8, inImage->data.U8[0], size); + + return outVector; +} + +psImage* psVectorToMatrix(psImage* outImage, + const psVector* inVector) +{ + psS32 size = 0; + + #define VECTORTOMATRIX_CLEANUP {psFree(outImage); return NULL; } + // Error checks + PS_ASSERT_GENERAL_VECTOR_NON_NULL(inVector, VECTORTOMATRIX_CLEANUP); + + if (inVector->type.dimen == PS_DIMEN_VECTOR) { + PS_CHECK_DIMEN_AND_TYPE(inVector, PS_DIMEN_VECTOR, VECTORTOMATRIX_CLEANUP); + PS_ASSERT_GENERAL_VECTOR_NON_EMPTY(inVector, VECTORTOMATRIX_CLEANUP); + + outImage = psImageRecycle(outImage, 1, inVector->n, inVector->type.type); + + // More checks for PS_DIMEN_VECTOR + if (outImage->numCols > 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image has more than 1 column: numCols = %d.", + outImage->numCols); + VECTORTOMATRIX_CLEANUP; + } else if (outImage->numRows != inVector->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image and vector sizes differ: (%d vs %ld).", + outImage->numRows, inVector->n); + VECTORTOMATRIX_CLEANUP; + } + + size = PSELEMTYPE_SIZEOF(outImage->type.type) * outImage->numRows; + + } else if (inVector->type.dimen == PS_DIMEN_TRANSV) { + PS_CHECK_DIMEN_AND_TYPE(inVector, PS_DIMEN_TRANSV, VECTORTOMATRIX_CLEANUP); + PS_ASSERT_GENERAL_VECTOR_NON_EMPTY(inVector, VECTORTOMATRIX_CLEANUP); + outImage = psImageRecycle(outImage, inVector->n, 1, inVector->type.type); + // More checks for PS_DIMEN_TRANSV + if (outImage->numRows > 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image has more than 1 row: numRows = %d.", + outImage->numRows); + VECTORTOMATRIX_CLEANUP; + } else if (outImage->numCols != inVector->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image and vector sizes differ: (%d vs %ld).", + outImage->numCols, inVector->n); + VECTORTOMATRIX_CLEANUP; + } + + size = PSELEMTYPE_SIZEOF(outImage->type.type) * outImage->numCols; + } + + PS_ASSERT_GENERAL_IMAGE_NON_NULL(outImage, VECTORTOMATRIX_CLEANUP); + PS_CHECK_DIMEN_AND_TYPE(outImage, PS_DIMEN_IMAGE, VECTORTOMATRIX_CLEANUP); + + memcpy(outImage->data.U8[0], inVector->data.U8, size); + + return outImage; +} + +// This code supplied by Andy Becker (becker@astro.washington.edu) +psImage *psMatrixSVDSolve(psImage* evec, psVector* eval, const psImage* in) +{ + #define psMatrixSVD_EXIT {psFree(evec); psFree(eval); return NULL;} + + // Error checks Missing one for eval + PS_ASSERT_GENERAL_IMAGE_NON_NULL(in, psMatrixSVD_EXIT); + PS_CHECK_POINTERS(in, evec, psMatrixSVD_EXIT); + PS_CHECK_DIMEN_AND_TYPE(in, PS_DIMEN_IMAGE, psMatrixSVD_EXIT); + + // evec ends up : numCols x numCols + evec = psImageRecycle(evec, in->numCols, in->numCols, in->type.type); + eval = psVectorRecycle(eval, in->numCols, in->type.type); + + // Initialize data + int numRows = in->numRows; + int numCols = in->numCols; + + gsl_matrix *A = gsl_matrix_alloc(numRows, numCols); + gsl_matrix *V = gsl_matrix_alloc(numCols, numCols); + gsl_vector *S = gsl_vector_alloc(numCols); + gsl_vector *work = gsl_vector_alloc(numCols); + + // Copy psImage data into GSL matrix data + psImageToGslMatrix(A, in); + + // Calculate SVD decomposition + gsl_linalg_SV_decomp(A, V, S, work); + + // Copy GSL matrix data to psImage data + gslMatrixToPsImage(evec, V); + gslVectorToPsVector(eval, S); + + // Take the square root of eval + for (int i = 0; i < eval->n; i++) { + eval->data.F64[i] = sqrt(eval->data.F64[i]); + /* make sure that these things are sorted! */ + if (i > 0) { + assert(eval->data.F64[i] > eval->data.F64[i-1]); + } + } + + // Free GSL data + gsl_matrix_free(A); + gsl_matrix_free(V); + gsl_vector_free(S); + gsl_vector_free(work); + + return evec; +} Index: /branches/rel-1-1/psLib/src/math/psMatrix.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMatrix.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMatrix.h (revision 12167) @@ -0,0 +1,182 @@ +/* @file psMatrix.h + * + * @brief Provides functions for linear algebra operations on psImages and psVectors. + * + * Functions are provided to: + * Transpose a psImage + * Compute LUD + * Solve LUD + * Matrix inversion + * Calculate determinant + * Matrix multiplication + * Calculate Eigenvectors + * Convert matrix to vector + * Convert vector to matrix + * + * These functions treat psImages as if they were matrices, therefore there is no psMatrix. These functions + * operate only with the psF64 data type. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.26 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSMATRIX_H +#define PSMATRIX_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/** LU Decomposition of psImage matrix. + * + * Performs a LU decomposition on a psImage matrix and returns the LU matrix. If the user specifies NULL for + * the outImage or outPerm arguments, then they will be automatically created. The input image must + * be square. This function operates only with the psF64 data type. Input and output arguments should not be + * the same. GSL indexes the top row as the zero row, not the bottom. + * + * @return psImage* : Pointer to LU decomposed psImage. + */ +psImage* psMatrixLUD( + psImage* out, ///< Image to return, or NULL. + psVector** perm, ///< Output permutation vector used by psMatrixLUSolve. + const psImage* in ///< Image to decompose. +); + +/** LU Solution of psImage matrix. + * + * Solves for and returns the psVector, {x} in the equation [A]{x} = {b}. If the user specifies NULL as the + * outVector argument, then it will automatically be created. The input image must be square. This function + * operates only with the psF64 data type. Input and output arguments should not be the same. GSL indexes + * the top row as the zero row, not the bottom. + * + * @return psVector* : Pointer to psVector solution of matrix equation. + */ +psVector* psMatrixLUSolve( + psVector* out, ///< Vector to return, or NULL. + const psImage* LU, ///< LU-decomposed matrix. + const psVector* RHS, ///< Vector right-hand-side of equation. + const psVector* perm ///< Permutation vector resulting from psMatrixLUD function. +); + +/** Gauss-Jordan numerical solver. + * + * @return bool: True if successful. + */ +bool psMatrixGJSolve( + psImage *A, ///< Matrix to be solved + psVector *b ///< Vector of values +); + +/** Gauss-Jordan numerical solver for F32 input data + * + * @return bool: True if successful. + */ +bool psMatrixGJSolveF32( + psImage *A, ///< Matrix to be solved + psVector *b ///< Vector of values +); + +/** Invert psImage matrix. + * + * Inverts a psImage matrix and returns the determinant as an option through the argument list. If the user + * specifies NULL as the outImage argument, then it will automatically be created. The input image must be + * square. This function operates only with the psF64 data type. Input and output arguments should not be + * the same. GSL indexes the top row as the zero row, not the bottom. + * + * @return psImage* : Pointer to inverted psImage. + */ +psImage* psMatrixInvert( + psImage* out, ///< Image to return, or NULL for in-place substitution. + const psImage* in, ///< Image to be inverted + float *determinant ///< Determinant to return, or NULL +); + +/** Calculate psImage matrix determinant. + * + * Calculates the determinant of a psImage matrix and returns the single precision floating point result. The + * input image must be square. This function operates only with the psF64 data type. GSL indexes the top row + * as the zero row, not the bottom. + * + * @return float: Determinant from psImage. + */ +float psMatrixDeterminant( + const psImage* in ///< Image used to calculate determinant. +); + +/** Performs psImage matrix multiplication. + * + * Performs a classical matrix multiplication involving row and column operations. Input images must be square + * and the same size. If the user specifies NULL as the outImage argument, then it will automatically be + * created. This function operates only with the psF64 data type. GSL indexes the top row as the + * zero row, not the bottom. + * + * @return psImage* : Pointer to resulting psImage. + */ +psImage* psMatrixMultiply( + psImage* out, ///< Matrix to return, or NULL. + const psImage* in1, ///< First input image. + const psImage* in2 ///< Second input image. +); + +/** Transpose matrix. + * + * Performs psImage matrix transpose by substituting existing rows for columns. The input image must be + * square. If the user specifies NULL as the outImage argument, then it will automaticallty be created. + * This function operates only with the psF64 data type. GSL indexes the top row as the zero + * row, not the bottom. + * + * @return psImage* : Pointer to transposed psImage. + */ +psImage* psMatrixTranspose( + psImage* out, ///< Image to return, or NULL + const psImage* in ///< Image to transpose +); + +/** Calculate matrix eigenvectors. + * + * Calculates the eigenvectors for a matrix. The input image must be symmetric and square. If the user + * specifies NULL as the outImage argument, then it will automatically be created. This function operates + * only with the psF64 data type. GSL indexes the top row as the zero row, not the bottom. + * + * @return psImage* : Pointer to matrix of Eigenvectors. + */ +psImage* psMatrixEigenvectors( + psImage* out, ///< Eigenvectors to return, or NULL. + const psImage* in ///< Input image. +); + +/** Convert matrix to vector. + * + * Converts a 1-d psImage matrix into a vector. If the user specifies NULL as the outVector argument, then it + * will automatically be created based on the input image (PS_DIMEN_VECTOR for an input image with 1 col or + * PS_DIMENT_TRANSV for an input image with 1 row). Either the number of rows or the number of colums of the + * input matrix must be 1. This function operates only with the psF64 data type. + * + * @return psVector* : Pointer to psVector. + */ +psVector* psMatrixToVector( + psVector* outVector, ///< Vector to return, or NULL. + const psImage* inImage ///< Image to convert. +); + +/** Convert vector to matrix. + * + * Converts a vector into a psImage matrix. If the dimensionality of the vector is PS_DIMEN_VECTOR, then the + * resulting psImage is a 1d column. If the dimensionality of the vector is PS_DIMEN_TRANSV, then the + * resulting psImage is a 1d row. If the user specifies NULL as the outImage argument, then it will + * automatically be created. This function operates only with the psF64 data type. + * + * @return psVector* : Pointer to psIamge. + */ +psImage* psVectorToMatrix( + psImage* outImage, ///< Matrix to return, or NULL. + const psVector* inVector ///< Vector to convert. +); + +/// Single value decomposition, provided by Andy Becker +psImage *psMatrixSVDSolve(psImage* evec, psVector* eval, const psImage* in); + +/// @} +#endif // #ifndef PSMATRIX_H Index: /branches/rel-1-1/psLib/src/math/psMinimizeLMM.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizeLMM.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizeLMM.c (revision 12167) @@ -0,0 +1,553 @@ +/** @file psMinimize.c + * \brief basic minimization functions + * @ingroup Math + * + * This file will contain functions to minimize an arbitrary function at + * a data point, fit an arbitrary function to a set of data points, and + * fit a 1-D polynomial to a set of data points. + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.30 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include + +#include "psAbort.h" +#include "psAssert.h" +#include "psMinimizeLMM.h" +#include "psImage.h" +#include "psImageStructManip.h" +#include "psLogMsg.h" +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +bool p_psMinLM_GuessABP( + psImage *Alpha, + psVector *Beta, + psVector *Params, + const psImage *alpha, + const psVector *beta, + const psVector *params, + const psVector *paramMask, + psMinimizeLMLimitFunc checkLimits, + psF32 lambda) +{ + PS_ASSERT_VECTOR_TYPE(Alpha, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(Beta, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(Params, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(alpha, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(beta, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, false); + if (paramMask) { + PS_ASSERT_VECTOR_TYPE(paramMask, PS_TYPE_MASK, false); + } + + // XXX the LU Decomposition code requires F64. this is now incompatible + // with the rest of this code. drop this segment when the changes are tested. + # define USE_LU_DECOMP 0 + # if (USE_LU_DECOMP) + psVector *LUv = NULL; + psImage *LUm = NULL; + psImage *A = NULL; + psF32 det; + // LU decomposition version + psTrace("psLib.math", 5, "using LUD version\n"); + + // set new guess values (creates matrix A) + A = psImageCopy(NULL, alpha, PS_TYPE_F64); + for (int j = 0; j < params->n; j++) { + if ((paramMask != NULL) && (paramMask->data.U8[j])) { + continue; + } + A->data.F64[j][j] = alpha->data.F64[j][j] * (1.0 + lambda); + } + + // solve A*beta = Beta (Alpha = 1/A) + // these operations do not modify the input values (creates LUm, LUv) + LUm = psMatrixLUD(NULL, &LUv, A); + if (LUm == NULL) { + psError(PS_ERR_UNKNOWN, false, "psMatrixLUD() returned NULL\n"); + } + Beta = psMatrixLUSolve(Beta, LUm, beta, LUv); + if (Beta == NULL) { + psError(PS_ERR_UNKNOWN, false, "psMatrixLUSolve() returned NULL\n"); + } + Alpha = psMatrixInvert(Alpha, A, &det); + psFree(LUm); + psFree(LUv); + psFree(A); + + if (Alpha == NULL) { + psError(PS_ERR_UNKNOWN, false, "psMatrixInvert() returned NULL\n"); + return(false); + } + # else + // gauss-jordan version + psTrace("psLib.math", 5, "using Gauss-J version"); + + // set new guess values (creates matrix A) + Beta = psVectorCopy(Beta, beta, PS_TYPE_F32); + Alpha = psImageCopy(Alpha, alpha, PS_TYPE_F32); + for (int j = 0; j < params->n; j++) { + if ((paramMask != NULL) && (paramMask->data.U8[j])) { + continue; + } + Alpha->data.F32[j][j] = alpha->data.F32[j][j] * (1.0 + lambda); + } + + if (false == psMatrixGJSolveF32(Alpha, Beta)) { + // psError(PS_ERR_UNKNOWN, false, "singular matrix in Guess ABP\n"); + psTrace ("psLib.math", 4, "singular matrix in Guess ABP\n"); + return(false); + } + # endif + + // apply Beta to get new Params values + for (int j = 0; j < params->n; j++) { + if ((paramMask != NULL) && (paramMask->data.U8[j])) { + Params->data.F32[j] = params->data.F32[j]; + continue; + } + // apply beta limits + if (checkLimits) + checkLimits (PS_MINIMIZE_BETA_LIMIT, j, Params->data.F32, Beta->data.F32); + Params->data.F32[j] = params->data.F32[j] - Beta->data.F32[j]; + + // compare new params to param limits + if (checkLimits) + checkLimits (PS_MINIMIZE_PARAM_MIN, j, Params->data.F32, Beta->data.F32); + if (checkLimits) + checkLimits (PS_MINIMIZE_PARAM_MAX, j, Params->data.F32, Beta->data.F32); + } + return(true); +} + +bool psMinimizeGaussNewtonDelta( + psVector *delta, + const psVector *params, + const psVector *paramMask, + const psArray *x, + const psVector *y, + const psVector *yWt, + psMinimizeLMChi2Func func) +{ + psTrace("psLib.math", 3, "---- begin ----\n"); + // allocate internal arrays (current vs Guess) + psImage *alpha = psImageAlloc (params->n, params->n, PS_TYPE_F32); + psImage *Alpha = psImageAlloc (params->n, params->n, PS_TYPE_F32); + psVector *beta = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *Params = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *dy = NULL; + bool rc = true; + + // the user provides the error or NULL. we need to convert + // to appropriate weights + if (yWt != NULL) { + dy = (psVector *) yWt; + } else { + dy = psVectorAlloc(y->n, PS_TYPE_F32); + psVectorInit(dy, 1.0); + } + + // XXX should we give up if chisq is nan? + psF32 rcF32 = p_psMinLM_SetABX(alpha, beta, params, paramMask, x, y, dy, func); + if (isnan(rcF32)) { + psTrace ("psLib.math", 5, "p_psMinLM_SetABX() returned a NAN.\n"); + rc = false; + } + psTrace("psLib.math", 5, "p_psMinLM_SetABX() was succesful\n"); + // dump some useful info if trace is defined + if (psTraceGetLevel("psLib.math") >= 6) { + p_psImagePrint(psTraceGetDestination(), alpha, "alpha guess (0)"); + p_psVectorPrint(psTraceGetDestination(), beta, "beta guess (0)"); + p_psVectorPrint(psTraceGetDestination(), params, "params guess (0)"); + } + + bool rcBool = p_psMinLM_GuessABP(Alpha, delta, Params, alpha, beta, params, paramMask, NULL, 0.0); + if (rcBool == false) { + psTrace ("psLib.math", 5, "p_psMinLM_GuessABP() returned FALSE.\n"); + rc = false; + } + psTrace("psLib.math", 5, "p_psMinLM_GuessABP() was succesful\n"); + if (psTraceGetLevel("psLib.math") >= 6) { + p_psImagePrint(psTraceGetDestination(), Alpha, "alpha guess (1)"); + p_psVectorPrint(psTraceGetDestination(), delta, "delta guess (1)"); + p_psVectorPrint(psTraceGetDestination(), Params, "params guess (1)"); + } + + psFree(alpha); + psFree(Alpha); + psFree(beta); + psFree(Params); + if (yWt == NULL) { + psFree(dy); + } + psTrace("psLib.math", 3, "---- end ----\n"); + return(rc); +} + +// measure linear model prediction +psF32 p_psMinLM_dLinear( + const psVector *Beta, + const psVector *beta, + psF32 lambda) +{ + + /* get linear model prediction */ + psF32 dLinear = 0; + psF32 *B = Beta->data.F32; + psF32 *b = beta->data.F32; + for (int i = 0; i < beta->n; i++) { + dLinear += lambda*PS_SQR(B[i]) + B[i]*b[i]; + } + return(0.5*dLinear); +} + +// alpha, beta, params are already allocated +psF32 p_psMinLM_SetABX( + psImage *alpha, + psVector *beta, + const psVector *params, + const psVector *paramMask, + const psArray *x, + const psVector *y, + const psVector *dy, + psMinimizeLMChi2Func func) +{ + // XXX: Check vector sizes. + PS_ASSERT_IMAGE_NON_NULL(alpha, NAN); + PS_ASSERT_VECTOR_NON_NULL(beta, NAN); + PS_ASSERT_VECTOR_NON_NULL(params, NAN); + PS_ASSERT_PTR_NON_NULL(x, NAN); + PS_ASSERT_VECTOR_NON_NULL(y, NAN); + PS_ASSERT_VECTOR_NON_NULL(dy, NAN); + + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, false); + if (paramMask) { + PS_ASSERT_VECTOR_TYPE(paramMask, PS_TYPE_MASK, false); + } + + psF32 chisq; + psF32 delta; + psF32 weight; + psF32 ymodel; + psVector *deriv = psVectorAlloc(params->n, PS_TYPE_F32); + + // zero alpha and beta for summing below + for (psS32 j = 0; j < params->n; j++) { + for (psS32 k = 0; k < params->n; k++) { + alpha->data.F32[j][k] = 0; + } + beta->data.F32[j] = 0; + } + chisq = 0.0; + + // calculate chisq, alpha, beta + for (psS32 i = 0; i < y->n; i++) { + ymodel = func(deriv, params, (psVector *) x->data[i]); + + delta = ymodel - y->data.F32[i]; + chisq += PS_SQR(delta) * dy->data.F32[i]; + if (isnan(dy->data.F32[i])) + psAbort("nan in weights"); + if (isnan(delta)) + psAbort("nan in delta"); + if (isnan(chisq)) + psAbort("nan in chisq"); + + for (psS32 j = 0; j < params->n; j++) { + if ((paramMask != NULL) && (paramMask->data.U8[j])) { + continue; + } + weight = deriv->data.F32[j] * dy->data.F32[i]; + for (psS32 k = 0; k <= j; k++) { + if ((paramMask != NULL) && (paramMask->data.U8[k])) { + continue; + } + alpha->data.F32[j][k] += weight * deriv->data.F32[k]; + } + beta->data.F32[j] += weight * delta; + } + } + + // calculate lower-left half of alpha + for (psS32 j = 1; j < params->n; j++) { + for (psS32 k = 0; k < j; k++) { + alpha->data.F32[k][j] = alpha->data.F32[j][k]; + } + } + + // fill in pivots if we apply a mask + if (paramMask != NULL) { + for (psS32 j = 0; j < params->n; j++) { + if (paramMask->data.U8[j]) { + alpha->data.F32[j][j] = 1; + beta->data.F32[j] = 1; + } + } + } + + psFree(deriv); + return(chisq); +} + + +/****************************************************************************** +psMinimizeLMChi2(): This routine will take an procedure which calculates an +arbitrary function and it's derivative and minimize the chi-squared match +between that function at the specified coords and the specified value at those +coords. + +This requires F32 input data; all internal calls use F32. +XXX Make an F64 version? + *****************************************************************************/ +bool psMinimizeLMChi2( + psMinimization *min, + psImage *covar, + psVector *params, + psMinConstraint *constraint, + const psArray *x, + const psVector *y, + const psVector *yWt, + psMinimizeLMChi2Func func) +{ + psTrace("psLib.math", 3, "---- begin ----\n"); + PS_ASSERT_PTR_NON_NULL(min, false); + PS_ASSERT_VECTOR_NON_NULL(params, false); + PS_ASSERT_VECTOR_NON_EMPTY(params, false); + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, false); + psVector *paramMask = NULL; + if (constraint != NULL) { + paramMask = constraint->paramMask; + if (paramMask != NULL) { + PS_ASSERT_VECTOR_TYPE(paramMask, PS_TYPE_U8, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(params, paramMask, false); + } + } + PS_ASSERT_PTR_NON_NULL(x, false); + for (psS32 i = 0 ; i < x->n ; i++) { + psVector *coord = (psVector *) (x->data[i]); + PS_ASSERT_VECTOR_NON_NULL(coord, false); + PS_ASSERT_VECTOR_TYPE(coord, PS_TYPE_F32, false); + } + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_NON_EMPTY(y, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F32, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(x, y, false); + if (yWt != NULL) { + PS_ASSERT_VECTOR_TYPE(yWt, PS_TYPE_F32, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(y, yWt, false); + } + PS_ASSERT_PTR_NON_NULL(func, false); + + psMinimizeLMLimitFunc checkLimits = NULL; + if (constraint) { + checkLimits = constraint->checkLimits; + } + + // this function has test and current values for several things + // the current best value is in lower case + // the next guess value is in upper case + + // allocate internal arrays (current vs Guess) + psImage *alpha = psImageAlloc(params->n, params->n, PS_TYPE_F32); + psImage *Alpha = psImageAlloc(params->n, params->n, PS_TYPE_F32); + psVector *beta = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *Beta = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *Params = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *dy = NULL; + psF32 Chisq = 0.0; + psF32 lambda = 0.001; + + // the user provides the error or NULL. we need to convert + // to appropriate weights + if (yWt != NULL) { + dy = (psVector *) yWt; + } else { + dy = psVectorAlloc(y->n, PS_TYPE_F32); + psVectorInit(dy, 1.0); + } + + // calculate initial alpha and beta, set chisq (min->value) + min->value = p_psMinLM_SetABX(alpha, beta, params, paramMask, x, y, dy, func); + if (isnan(min->value)) { + min->iter = min->maxIter; + return(false); + } + // dump some useful info if trace is defined + if (psTraceGetLevel("psLib.math") >= 6) { + p_psImagePrint(psTraceGetDestination(), alpha, "alpha guess (0)"); + p_psVectorPrint(psTraceGetDestination(), beta, "beta guess (0)"); + } + if (psTraceGetLevel("psLib.math") >= 5) { + p_psVectorPrint(psTraceGetDestination(), params, "params guess (0)"); + } + + // iterate until the tolerance is reached, or give up + while ((min->iter < min->maxIter) && ((min->lastDelta > min->tol) || !isfinite(min->lastDelta))) { + psTrace("psLib.math", 5, "Iteration number %d. (max iterations is %d).\n", min->iter, min->maxIter); + psTrace("psLib.math", 5, "Last delta is %f. Min->tol is %f.\n", min->lastDelta, min->tol); + + // set a new guess for Alpha, Beta, Params + if (!p_psMinLM_GuessABP(Alpha, Beta, Params, alpha, beta, params, paramMask, checkLimits, lambda)) { + min->iter ++; + lambda *= 10.0; + continue; + } + + // measure linear model prediction + psF32 dLinear = p_psMinLM_dLinear(Beta, beta, lambda); + + // dump some useful info if trace is defined + if (psTraceGetLevel("psLib.math") >= 6) { + p_psImagePrint(psTraceGetDestination(), Alpha, "alpha guess (1)"); + p_psVectorPrint(psTraceGetDestination(), Beta, "beta guess (1)"); + } + if (psTraceGetLevel("psLib.math") >= 5) { + p_psVectorPrint(psTraceGetDestination(), Params, "params guess (1)"); + } + + // calculate Chisq for new guess, update Alpha & Beta + Chisq = p_psMinLM_SetABX(Alpha, Beta, Params, paramMask, x, y, dy, func); + if (isnan(Chisq)) { + min->iter ++; + lambda *= 10.0; + continue; + } + + // convergence criterion: + // compare the delta (min->value - Chisq) with the + // expected delta from the linear model (dLinear) + // accept new guess if it is an improvement (rho > 0), or else increase lambda + psF32 rho = (min->value - Chisq) / dLinear; + + psTrace("psLib.math", 5, "last chisq: %f, new chisq %f, delta: %f, rho: %f\n", min->value, + Chisq, min->lastDelta, rho); + + // dump some useful info if trace is defined + if (psTraceGetLevel("psLib.math") >= 6) { + p_psImagePrint(psTraceGetDestination(), Alpha, "alpha guess (2)"); + p_psVectorPrint(psTraceGetDestination(), Beta, "beta guess (2)"); + } + + /* if (Chisq < min->value) { */ + if (rho > 0.0) { + min->lastDelta = (min->value - Chisq) / (dy->n - params->n); + min->value = Chisq; + alpha = psImageCopy(alpha, Alpha, PS_TYPE_F32); + beta = psVectorCopy(beta, Beta, PS_TYPE_F32); + params = psVectorCopy(params, Params, PS_TYPE_F32); + lambda *= 0.1; + } else { + lambda *= 10.0; + } + min->iter++; + } + psTrace("psLib.math", 5, "chisq: %f, last delta: %f, Niter: %d\n", min->value, min->lastDelta, min->iter); + + // construct & return the covariance matrix (if requested) + if (covar != NULL) { + if (!p_psMinLM_GuessABP(covar, Beta, Params, alpha, beta, params, paramMask, NULL, 0.0)) { + psTrace ("psLib.math", 5, "failure to calculate covariance matrix\n"); + } + } + + // free the internal temporary data + psFree(alpha); + psFree(Alpha); + psFree(beta); + psFree(Beta); + psFree(Params); + if (yWt == NULL) { + psFree(dy); + } + if (min->iter == min->maxIter) { + psTrace("psLib.math", 3, "---- end (false) ----\n"); + return(false); + } + psTrace("psLib.math", 3, "---- end (true) ----\n"); + return(true); +} + +static void minimizationFree(psMinimization *min) +{ + // There are no dynamically allocated items +} + +psMinimization *psMinimizationAlloc(int maxIter, + float tol) +{ + PS_ASSERT_INT_NONNEGATIVE(maxIter, NULL); + + psMinimization *min = psAlloc(sizeof(psMinimization)); + psMemSetDeallocator(min, (psFreeFunc)minimizationFree); + P_PSMINIMIZATION_SET_MAXITER(min,maxIter); + P_PSMINIMIZATION_SET_TOL(min,tol); + min->value = 0.0; + min->iter = 0; + min->lastDelta = NAN; + + return(min); +} + +bool psMemCheckMinimization(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return( psMemGetDeallocator(ptr) == (psFreeFunc)minimizationFree ); +} + + +static void constraintFree(psMinConstraint *tmp) +{ + if (tmp == NULL) + return; + + psFree (tmp->paramMask); +} + +psMinConstraint* psMinConstraintAlloc() +{ + psMinConstraint *tmp = psAlloc(sizeof(psMinConstraint)); + psMemSetDeallocator(tmp, (psFreeFunc)constraintFree); + tmp->paramMask = NULL; + tmp->checkLimits = NULL; + + return(tmp); +} + +bool psMemCheckConstraint(psPtr tmp) +{ + return(psMemGetDeallocator(tmp) == (psFreeFunc) constraintFree); +} Index: /branches/rel-1-1/psLib/src/math/psMinimizeLMM.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizeLMM.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizeLMM.h (revision 12167) @@ -0,0 +1,171 @@ +/* @file psMinimizeLMM.c + * @brief basic minimization functions + * + * This file will contain function prototypes for various Levenberg-Marquadt + * minimization routines. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:36:09 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_MINIMIZE_LMM_H +#define PS_MINIMIZE_LMM_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psVector.h" +#include "psMemory.h" +#include "psArray.h" +#include "psImage.h" +#include "psMatrix.h" +#include "psPolynomial.h" +#include "psSpline.h" +#include "psStats.h" +#include "psTrace.h" +#include "psError.h" +#include "psConstants.h" + +#define PS_DETERMINE_BRACKET_STEP_SIZE 0.10 +#define PS_MAX_LMM_ITERATIONS 100 +#define PS_MAX_MINIMIZE_ITERATIONS 100 +#define P_PSMINIMIZATION_SET_MAXITER(m,val) *(int*)&m->maxIter = val + #define P_PSMINIMIZATION_SET_TOL(m,val) *(float*)&m->tol = val + + typedef enum { + PS_MINIMIZE_BETA_LIMIT, + PS_MINIMIZE_PARAM_MIN, + PS_MINIMIZE_PARAM_MAX + } psMinConstraintMode; + +/** Specifies the format of a user-defined function that the general Levenberg- + * Marquardt minimizer routine will accept. + * + * @return float: the single float value of the function given the parameters, + * positions, and derivatives. + */ +typedef +float (*psMinimizeLMChi2Func)( + psVector *deriv, ///< derivatives of the function + const psVector *params, ///< the parameters used to evaluate the function + const psVector *x ///< positions for evaluation +); + +/** Specifies the format of a user-defined function which check the parameters + * against the allowed limits. used by the general Levenberg-Marquardt minimizer. + * + * @return float: the single float value of the function given the parameters, + * positions, and derivatives. + */ +typedef +bool (*psMinimizeLMLimitFunc)( + psMinConstraintMode mode, ///< which limit to check + int nParam, ///< which param to check + float *params, ///< current param value set + float *beta ///< current beta value, if needed +); + +/** A data structure for minimization routines. + * + * Contains numerical analysis parameters/values + */ +typedef struct +{ + const int maxIter; ///< Convergence limit + const float tol; ///< Error Tolerance + float value; ///< Value of function at minimum + int iter; ///< Number of iterations to date + float lastDelta; ///< The last difference for the fit +} +psMinimization; + +/** A data structure for minimization routines. + * + * + */ +typedef struct +{ + psVector *paramMask; ///< valid / invalid parameters + psMinimizeLMLimitFunc checkLimits; ///< user-supplied function to test the parameter limits +} +psMinConstraint; + +psMinConstraint *psMinConstraintAlloc(); + +/** Allocates a psMinimization structure. + * + * @return psMinimization* : a new psMinimization struct + */ +psMinimization *psMinimizationAlloc( + int maxIter, ///< Number of minimization iterations to perform. + float tol ///< Requested error tolerance +); + +/* Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psMinimization structure, false otherwise. + */ +bool psMemCheckMinimization( + psPtr ptr ///< the pointer whose type to check +); + +/** Minimizes a specified function based on the Levenberg-Marquardt method. + * + * @return bool: True if successful. + */ +bool psMinimizeLMChi2( + psMinimization *min, ///< Minimization specification + psImage *covar, ///< Covariance matrix + psVector *params, ///< "Best Guess" for the parameters that minimize func + psMinConstraint *constraint, ///< Constraints on the parameters + const psArray *x, ///< Measurement ordinates of multiple vectors + const psVector *y, ///< Measurement coordinates + const psVector *yWt, ///< Errors in the measurement coordinates + psMinimizeLMChi2Func func ///< Specified function +); + +bool psMinimizeGaussNewtonDelta ( + psVector *delta, + const psVector *params, + const psVector *paramMask, + const psArray *x, + const psVector *y, + const psVector *yErr, + psMinimizeLMChi2Func func +); + +/** Function used to set parameters for generating "best guess" in minimizing Chi-Squared value. + * + * @return psF32: Chi-squared value for new guess + */ +psF32 p_psMinLM_SetABX ( + psImage *alpha, ///< alpha guess + psVector *beta, ///< beta guess + const psVector *params, ///< params guess + const psVector *paramMask, ///< param mask + const psArray *x, ///< Measurement ordinates + const psVector *y, ///< Measurement coordinates + const psVector *dy, ///< Weights calculated from y-errors + psMinimizeLMChi2Func func ///< Specified function +); + + +bool p_psMinLM_GuessABP( + psImage *Alpha, + psVector *Beta, + psVector *Params, + const psImage *alpha, + const psVector *beta, + const psVector *params, + const psVector *paramMask, + psMinimizeLMLimitFunc checkLimits, + psF32 lambda +); + +/// @} +#endif // #ifndef PS_MINIMIZE_LMM_H Index: /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.c (revision 12167) @@ -0,0 +1,2223 @@ +/** @file psMinimize.c + * \brief basic minimization functions + * @ingroup Math + * + * This file will contain functions to minimize an arbitrary function at + * a data point, fit an arbitrary function to a set of data points, and + * fit a 1-D polynomial to a set of data points. + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.30 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 01:15:49 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + * XXX: psMatrixLUSolve() does not return error codes when the results are NANs. + * + * XXX: For clip-fit functions, what should we do if the mask is NULL? + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include +#include + +#include "psMinimizePolyFit.h" +#include "psAssert.h" +#include "psMinimizeLMM.h" // For Gauss-Jordan routines +#include "psStats.h" +#include "psImage.h" +#include "psImageStructManip.h" +#include "psBinaryOp.h" +#include "psLogMsg.h" +#include "psMathUtils.h" +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +# define USE_GAUSS_JORDAN 1 +# define USE_ROBUST_STATS_FOR_CLIPPING 1 + +#define PS_VECTOR_GEN_CHEBY_INDEX(VEC, SIZE, TYPE) \ +VEC = psVectorAlloc(SIZE, TYPE); \ +if (TYPE == PS_TYPE_F64) { \ + for (psS32 i = 0 ; i < SIZE ; i++) { \ + VEC->data.F64[i] = ((2.0 / ((psF64) (SIZE - 1))) * ((psF64) i)) - 1.0; \ + }\ +} else if (TYPE == PS_TYPE_F32){ \ + for (psS32 i = 0 ; i < SIZE ; i++) { \ + VEC->data.F32[i] = ((2.0 / ((psF32) (SIZE - 1))) * ((psF32) i)) - 1.0; \ + }\ +}\ + +// free a local temporary F64 vector (TEMP) which is a copy of a non-F64 vector (ORIG) +# define PS_FREE_TEMP_F64_VECTOR(ORIG, TEMP) \ +if ((ORIG != NULL) && (ORIG->type.type != PS_TYPE_F64)) { psFree(TEMP); } + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +/****************************************************************************** +BuildSums1D(sums, x, polyOrder, sums): this routine calculates the powers of +input parameter "x" between 0 and input parameter nTerms*2. The result is +returned as a psVector sums. +*****************************************************************************/ +static psVector *BuildSums1D( + psVector* sums, + psF64 x, + psS32 nTerm) +{ + psS32 nSum = 0; + psF64 xSum = 0.0; + + // + // XXX: Why do we multiply by 2 here? It's better to do it outside and + // have the definition of this function remain sensible. + // + nSum = 2*nTerm; + if (sums == NULL) { + sums = psVectorAlloc(nSum, PS_TYPE_F64); + } else if (nSum > sums->n) { + sums = psVectorRealloc(sums, nSum); + sums->n = nSum; + } + + xSum = 1.0; + for (psS32 i = 0; i < nSum; i++) { + sums->data.F64[i] = xSum; + xSum *= x; + } + return (sums); +} + +/****************************************************************************** +BuildSums2D(sums, x, y, nXterm, nYterm): this routine calculates the powers of +input parameter "x" and "y" between 0 and input parameter nXterms*2 and +nYterm*2. The result is returned as a psImage sums. + *****************************************************************************/ +static psImage *BuildSums2D( + psImage *sums, + psF64 x, + psF64 y, + psS32 nXterm, + psS32 nYterm) +{ + psS32 nXsum = 0; + psS32 nYsum = 0; + psF64 xSum = 1.0; + psF64 ySum = 1.0; + + // note that we are using the X and Y elements of the image reversed to be + // consistent with the other BuildSumsND functions in terms of the definition + // of the sums array + nXsum = 2*nXterm; + nYsum = 2*nYterm; + if (sums == NULL) { + sums = psImageAlloc(nYsum, nXsum, PS_TYPE_F64); + } + if ((nYsum != sums->numCols) || (nXsum != sums->numRows)) { + psFree (sums); + sums = psImageAlloc(nYsum, nXsum, PS_TYPE_F64); + } + + xSum = 1.0; + for (psS32 i = 0; i < nXsum; i++) { + ySum = xSum; + for (psS32 j = 0; j < nYsum; j++) { + sums->data.F64[i][j] = ySum; + ySum *= y; + } + xSum *= x; + } + + return (sums); +} + +/****************************************************************************** +BuildSums3D(sums, x, y, z, nXterm, nYterm, nZterm): this routine calculates +the powers of input parameter "x", "y", and "z" between 0 and input parameter +nXterms*2, nYterm*2, and nZterm*2. The result is returned as a 3-D array sums. + *****************************************************************************/ +static psF64 ***BuildSums3D( + psF64 ***sums, + psF64 x, + psF64 y, + psF64 z, + psS32 nXterm, + psS32 nYterm, + psS32 nZterm) +{ + psS32 nXsum = 0; + psS32 nYsum = 0; + psS32 nZsum = 0; + psF64 xSum = 1.0; + psF64 ySum = 1.0; + psF64 zSum = 1.0; + + nXsum = 2*nXterm; + nYsum = 2*nYterm; + nZsum = 2*nZterm; + if (sums == NULL) { + sums = (psF64 ***) psAlloc (nXsum*sizeof(psF64)); + for (psS32 i = 0; i < nXsum; i++) { + sums[i] = (psF64 **) psAlloc (nYsum*sizeof(psF64)); + for (psS32 j = 0; j < nYsum; j++) { + sums[i][j] = (psF64 *) psAlloc (nZsum*sizeof(psF64)); + } + } + } + // careful with this function: there is no size checking and realloc for reuse + + if (1) { + zSum = 1.0; + for (psS32 k = 0; k < nZsum; k++) { + ySum = zSum; + for (psS32 j = 0; j < nYsum; j++) { + xSum = ySum; + for (psS32 i = 0; i < nXsum; i++) { + sums[i][j][k] = xSum; + xSum *= x; + } + ySum *= y; + } + zSum *= z; + } + } else { + xSum = 1.0; + for (psS32 i = 0; i < nXsum; i++) { + ySum = xSum; + for (psS32 j = 0; j < nYsum; j++) { + zSum = ySum; + for (psS32 k = 0; k < nZsum; k++) { + sums[i][j][k] = zSum; + zSum *= z; + } + ySum *= y; + } + xSum *= x; + } + } + + return (sums); +} + +/****************************************************************************** + BuildSums4D(sums, x, y, z, t, nXterm, nYterm, nZterm, nTterm). equiv to + BuildSums2D(). The result is returned as a psF64 **** +*****************************************************************************/ +static psF64 ****BuildSums4D( + psF64 ****sums, + psF64 x, + psF64 y, + psF64 z, + psF64 t, + psS32 nXterm, + psS32 nYterm, + psS32 nZterm, + psS32 nTterm) +{ + psS32 nXsum = 0; + psS32 nYsum = 0; + psS32 nZsum = 0; + psS32 nTsum = 0; + psF64 xSum = 1.0; + psF64 ySum = 1.0; + psF64 zSum = 1.0; + psF64 tSum = 1.0; + + nXsum = 2*nXterm; + nYsum = 2*nYterm; + nZsum = 2*nZterm; + nTsum = 2*nTterm; + if (sums == NULL) { + sums = (psF64 ****) psAlloc (nXsum*sizeof(psF64)); + for (psS32 i = 0; i < nXsum; i++) { + sums[i] = (psF64 ***) psAlloc (nYsum*sizeof(psF64)); + for (psS32 j = 0; j < nYsum; j++) { + sums[i][j] = (psF64 **) psAlloc (nZsum*sizeof(psF64)); + for (psS32 k = 0; k < nZsum; k++) { + sums[i][j][k] = (psF64 *) psAlloc (nTsum*sizeof(psF64)); + } + } + } + } + // careful with this function: there is no size checking and realloc for reuse + + tSum = 1.0; + for (psS32 m = 0; m < nTsum; m++) { + zSum = tSum; + for (psS32 k = 0; k < nZsum; k++) { + ySum = zSum; + for (psS32 j = 0; j < nYsum; j++) { + xSum = ySum; + for (psS32 i = 0; i < nXsum; i++) { + sums[i][j][k][m] = xSum; + xSum *= x; + } + ySum *= y; + } + zSum *= z; + } + tSum *= t; + } + return (sums); +} + +/****************************************************************************** + ****************************************************************************** + Analytical 1-D fitting routines. + ****************************************************************************** + *****************************************************************************/ + +/****************************************************************************** + ****************************************************************************** + 1-D Vector Poly Fitting Code. + ****************************************************************************** + *****************************************************************************/ + +/****************************************************************************** +vectorFitPolynomial1DCheb(): This routine will fit a Chebyshev +polynomial of degree myPoly->nX to the data points (x, y) and return the +coefficients of that polynomial. +*****************************************************************************/ +static bool vectorFitPolynomial1DCheb( + psPolynomial1D* myPoly, + const psVector *mask, + psMaskType maskValue, + const psVector* y, + const psVector* yErr, + const psVector* x) +{ + PS_ASSERT_POLY_NON_NULL(myPoly, NULL); + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(myPoly->nX, 0, NULL); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F64, NULL); + if (yErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, yErr, NULL); + PS_ASSERT_VECTOR_TYPE(yErr, PS_TYPE_F64, NULL); + } + if (x != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, x, NULL); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F64, NULL); + } + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, mask, NULL); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, NULL); + } + + int numTerms = myPoly->nX + 1; // Number of polynomial terms + int numData = x->n; // Number of data elements + + psImage *A = psImageAlloc(numTerms, numTerms, PS_TYPE_F64); // Least-squares matrix + psVector *B = psVectorAlloc(numTerms, PS_TYPE_F64); // Least-squares vector + psImageInit(A, 0.0); + psVectorInit(B, 0.0); + + psPolynomial1D **chebPolys = p_psCreateChebyshevPolys(numTerms); // The chebyshev polynomials + psImage *sums = psImageAlloc(numData, numTerms, PS_TYPE_F64); + for (int i = 0; i < numTerms; i++) { + if (myPoly->mask[i]) { + continue; + } + psPolynomial1D *cheb = chebPolys[i]; + psVector *sum = psPolynomial1DEvalVector(cheb, x); + memcpy(sums->data.F64[i], sum->data.F64, numData*sizeof(psF64)); + psFree(sum); + psFree(cheb); + } + psFree(chebPolys); + + // Dereference pointers, for speed in the loop + psF64 **matrix = A->data.F64; // Least-squares matrix + psF64 *vector = B->data.F64; // Least-squares vector + psU8 *dataMask = NULL; // Mask for data + if (mask) { + dataMask = mask->data.U8; + } + psU8 *termMask = myPoly->mask; // Mask for polynomial terms + psF64 *yData = y->data.F64; // Coordinate data + psF64 *yErrData = NULL; // Errors in the coordinate + if (yErr) { + yErrData = yErr->data.F64; + } + psF64 **sumsData = sums->data.F64; // Sums + + for (int k = 0; k < numData; k++) { + if (dataMask && dataMask[k]) { + continue; + } + + double wt; + if (!yErr) { + wt = 1.0; + } else { + // this filters fErr == 0 values + wt = (yErrData[k] == 0) ? 0.0 : 1.0 / PS_SQR(yErrData[k]); + } + + for (int i = 0; i < numTerms; i++) { + if (termMask[i]) { + matrix[i][i] = 1.0; + continue; + } + vector[i] += yData[k] * sumsData[i][k] * wt; + matrix[i][i] += sumsData[i][k] * sumsData[i][k] * wt; // The diagonal entry + for (int j = i + 1; j < numTerms; j++) { // The upper diagonal only: we will use symmetry + if (termMask[j]) { + continue; + } + double value = sumsData[i][k] * sumsData[j][k] * wt; // The value to add to the matrix + matrix[i][j] += value; + matrix[j][i] += value; // Taking advantage of the symmetry + } + } + } + psFree(sums); + + if (psTraceGetLevel("psLib.math") >= 6) { + PS_IMAGE_PRINT_F64(A); + PS_VECTOR_PRINT_F64(B); + } + + if (USE_GAUSS_JORDAN) { + // GaussJordan version + if (!psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Could not solve linear equations. Returning NULL.\n"); + goto escape_GJ; + } else { + // the first nTerm entries in B correspond directly to the desired + // polynomial coefficients. this is only true for the 1D case + for (psS32 k = 0; k < numTerms; k++) { + myPoly->coeff[k] = B->data.F64[k]; + myPoly->coeffErr[k] = sqrt(A->data.F64[k][k]); + } + // The constant needs to be multiplied by 2, because it's half the a_0. + myPoly->coeff[0] *= 2.0; + myPoly->coeffErr[0] *= 2.0; + } + } else { + // LUD version of the fit + psImage *ALUD = NULL; + psVector* outPerm = NULL; + psVector* coeffs = NULL; + + ALUD = psImageAlloc(numTerms, numTerms, PS_TYPE_F64); + ALUD = psMatrixLUD(ALUD, &outPerm, A); + if (ALUD == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not do LUD decomposition on matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + coeffs = psMatrixLUSolve(coeffs, ALUD, B, outPerm); + if (coeffs == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not solve LUD matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + for (psS32 k = 0; k < numTerms; k++) { + myPoly->coeff[k] = coeffs->data.F64[k]; + } + } + } + psFree(ALUD); + psFree(coeffs); + psFree(outPerm); + } + psFree(A); + psFree(B); + return true; + +escape_LUD: + // XXX drop the LUD version! + psFree(A); + psFree(B); + return false; + +escape_GJ: + psFree(A); + psFree(B); + return false; +} + +/****************************************************************************** +VectorFitPolynomial1DOrd(myPoly, *mask, maskValue, *y, *yErr, *x): This is a +private routine which will fit a 1-D polynomial to a set of (x, f) pairs. The +x and fErr vectors may be NULL. All non-NULL vectors must be of type +PS_TYPE_F64. + +XXX EAM : since this is a private function, can we drop the ASSERTS? +XXX EAM : can we drop the LUD version? it does not calculate coeffErr values!! +*****************************************************************************/ +static bool VectorFitPolynomial1DOrd( + psPolynomial1D* myPoly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(myPoly, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE(f, PS_TYPE_F64, false); + if (mask) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (x) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F64, false); + } + if (fErr) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, PS_TYPE_F64, false); + } + + if (psTraceGetLevel("psLib.math") >= 6) { + psTrace("psLib.math", 6, "VectorFitPolynomial1D()\n"); + for (psS32 i = 0; i < f->n; i++) { + psTrace("psLib.math", 6, "(x, f, fErr) is ("); + if (x != NULL) { + psTrace("psLib.math", 6, "%f, %f, ", x->data.F64[i], f->data.F64[i]); + } else { + psTrace("psLib.math", 6, "%f, %f, ", (psF64) i, f->data.F64[i]); + } + if (fErr != NULL) { + psTrace("psLib.math", 6, "%f)\n", fErr->data.F64[i]); + } else { + psTrace("psLib.math", 6, "NULL)\n"); + } + } + } + + int nTerm = myPoly->nX + 1; // Number of terms in the equation + int nData = f->n; // Number of data points + psImage *A = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); // Least-squares matrix + psVector *B = psVectorAlloc(nTerm, PS_TYPE_F64); // Least-squares vector + + // Initialize data structures. + if (!psImageInit(A, 0.0) || !psVectorInit(B, 0.0)) { + psError(PS_ERR_UNKNOWN, false, "Could initialize data structures A, B. Returning NULL.\n"); + psFree(A); + psFree(B); + psTrace("psLib.math", 4, "---- %s() End ----\n", __func__); + return false; + } + + // Build the least squares matrix and vector + + // Dereference some pointers for speed in the loop + psU8 *dataMask = NULL; // Dereferenced version of mask for data points + if (mask) { + dataMask = mask->data.U8; + } + psU8 *termMask = myPoly->mask; // Dereferenced version of mask for polynomial terms + psF64 *ordinates = NULL; // Dereferenced version of ordinate data + if (x) { + ordinates = x->data.F64; + } + psF64 *coordinates = f->data.F64; // Dereferenced version of coordinate data + psF64 *coordErr = NULL; // Dereferenced version of coordinate errors + if (fErr) { + coordErr = fErr->data.F64; + } + psF64 *vector = B->data.F64; // Dereferenced version of least-squares vector + psF64 **matrix = A->data.F64; // Dereferenced version of least-squares matrix + + psVector* xSums = NULL; // Contains 1, x, x^2, x^3, etc, for ease of calculation + for (int k = 0; k < nData; k++) { + if (dataMask && dataMask[k] & maskValue) { + continue; + } + if (ordinates) { + xSums = BuildSums1D(xSums, ordinates[k], nTerm); + } else { + xSums = BuildSums1D(xSums, (psF64)k, nTerm); + } + psF64 *sums = xSums->data.F64; // Dereferenced version of sums + + double wt; + if (!fErr) { + wt = 1.0; + } else { + // this filters fErr == 0 values + wt = (coordErr[k] == 0) ? 0.0 : 1.0 / PS_SQR(coordErr[k]); + } + + for (int i = 0; i < nTerm; i++) { + if (termMask[i]) { + matrix[i][i] = 1.0; + continue; + } + vector[i] += coordinates[k] * sums[i] * wt; + matrix[i][i] += sums[2 * i] * wt; // The diagonal entry + for (int j = i + 1; j < nTerm; j++) { // The upper diagonal only: we will use symmetry + if (termMask[j]) { + continue; + } + double value = sums[i + j] * wt; // The value to add to the matrix + matrix[i][j] += value; + matrix[j][i] += value; // Taking advantage of the symmetry + } + } + } + psFree(xSums); + + if (psTraceGetLevel("psLib.math") >= 4) { + printf("Least-squares vector:\n"); + for (int i = 0; i < nTerm; i++) { + printf("%f ", B->data.F64[i]); + } + printf("\n"); + printf("Least-squares matrix:\n"); + for (int i = 0; i < nTerm; i++) { + for (int j = 0; j < nTerm; j++) { + printf("%f ", A->data.F64[i][j]); + } + printf("\n"); + } + } + + // XXX: rel10_ifa used psMatrixGJSolve(). However, this failed tests. So, I'm using psMatrixLUD(). + if (USE_GAUSS_JORDAN) { + // GaussJordan version + if (!psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Could not solve linear equations. Returning NULL.\n"); + goto escape_GJ; + } else { + // the first nTerm entries in B correspond directly to the desired + // polynomial coefficients. this is only true for the 1D case + for (psS32 k = 0; k < nTerm; k++) { + myPoly->coeff[k] = B->data.F64[k]; + myPoly->coeffErr[k] = sqrt(A->data.F64[k][k]); + } + } + + } else { + // LUD version of the fit + psImage *ALUD = NULL; + psVector* outPerm = NULL; + psVector* coeffs = NULL; + + ALUD = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); + ALUD = psMatrixLUD(ALUD, &outPerm, A); + if (ALUD == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not do LUD decomposition on matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + coeffs = psMatrixLUSolve(coeffs, ALUD, B, outPerm); + if (coeffs == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not solve LUD matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + for (psS32 k = 0; k < nTerm; k++) { + myPoly->coeff[k] = coeffs->data.F64[k]; + // XXX LUD does not give inverse of A + } + } + } + psFree(ALUD); + psFree(coeffs); + psFree(outPerm); + } + psFree(A); + psFree(B); + + psTrace("psLib.math", 4, "---- %s() End ----\n", __func__); + return true; + +escape_LUD: + psFree(A); + psFree(B); + return false; + +escape_GJ: + psFree(A); + psFree(B); + return false; +} + + +/****************************************************************************** +psVectorFitPolynomial1D(): This routine fits a polynomial of arbitrary degree +(specified in poly) to the data points (x, y) and return that polynomial. +Types F32 and F64 are supported, however, type F32 is done via vector +conversion only. + *****************************************************************************/ +bool psVectorFitPolynomial1D( + psPolynomial1D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x) +{ + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_INT_NONNEGATIVE(poly->nX, false); + + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_NON_EMPTY(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(fErr, false); + } + if (x != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, false); + } + + // Convert input vectors to F64 if necessary. + psVector *f64 = (f->type.type == PS_TYPE_F64) ? (psVector *) f : psVectorCopy (NULL, f, PS_TYPE_F64); + psVector *x64 = NULL; + if (x != NULL) { + x64 = (x->type.type == PS_TYPE_F64) ? (psVector *) x : psVectorCopy (NULL, x, PS_TYPE_F64); + } + psVector *fErr64 = NULL; + if (fErr != NULL) { + fErr64 = (fErr->type.type == PS_TYPE_F64) ? (psVector *) fErr : psVectorCopy (NULL, fErr, PS_TYPE_F64); + } + + bool result = true; + + switch (poly->type) { + case PS_POLYNOMIAL_ORD: + result = VectorFitPolynomial1DOrd(poly, mask, maskValue, f64, fErr64, x64); + if (!result) { + psError(PS_ERR_UNKNOWN, false, "Could not fit polynomial. Returning NULL.\n"); + } + break; + case PS_POLYNOMIAL_CHEB: + if (mask != NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: ignoring mask and maskValue with Chebyshev polynomials.\n"); + } + if (fErr != NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: ignoring error vector with Chebyshev polynomials.\n"); + } + if (x == NULL) { + // If x==NULL, create an x64 vector with x values set to (-1:1). + PS_VECTOR_GEN_CHEBY_INDEX(x64, f64->n, PS_TYPE_F64); + } + + result = vectorFitPolynomial1DCheb(poly, mask, maskValue, f64, fErr64, x64); + if (!result) { + psError(PS_ERR_UNKNOWN, false, "Could not fit polynomial. Returning NULL.\n"); + } + + if (x == NULL) { + psFree(x64); + } + break; + default: + psError(PS_ERR_UNKNOWN, true, "Incorrect polynomial type (%d). Returning NULL.\n", poly->type); + result = false; + break; + } + + // Free psVectors that were created for NULL arguments. + PS_FREE_TEMP_F64_VECTOR (f, f64); + PS_FREE_TEMP_F64_VECTOR (x, x64); + PS_FREE_TEMP_F64_VECTOR (fErr, fErr64); + + return result; +} + +// This function accepts F32 and F64 input vectors. +bool psVectorClipFitPolynomial1D( + psPolynomial1D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *xIn) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_PTR_NON_NULL(stats, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(mask, f, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(fErr, f, false); + PS_ASSERT_VECTOR_TYPE(fErr, f->type.type, false); + } + + // Internal pointers for possibly NULL vectors. + psVector *x = NULL; + if (xIn != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(xIn, f, false); + PS_ASSERT_VECTOR_TYPE(xIn, f->type.type, false); + x = (psVector *) xIn; + } else { + if (poly->type == PS_POLYNOMIAL_ORD) { + x = psVectorCreate(NULL, 0, f->n, 1, f->type.type); + } else if (poly->type == PS_POLYNOMIAL_CHEB) { + if (f->type.type == PS_TYPE_F32) { + PS_VECTOR_GEN_CHEBY_INDEX(x, f->n, PS_TYPE_F32); + } else if (f->type.type == PS_TYPE_F64) { + PS_VECTOR_GEN_CHEBY_INDEX(x, f->n, PS_TYPE_F64); + } + } else { + psError(PS_ERR_UNKNOWN, true, "Error, bad poly type.\n"); + return false; + } + } + + // the user supplies one of various stats option pairs, + // determine the desired mean and stdev STATS options: + // XXX enforce consistency? + // XXX psStatsGetValue() probably has inverted precedence + psStatsOptions meanOption = stats->options & (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | PS_STAT_ROBUST_MEDIAN | PS_STAT_CLIPPED_MEAN | PS_STAT_FITTED_MEAN | PS_STAT_FITTED_MEAN_V2); + psStatsOptions stdevOption = stats->options & (PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_STDEV | PS_STAT_CLIPPED_STDEV | PS_STAT_FITTED_STDEV | PS_STAT_FITTED_STDEV_V2); + if (!meanOption) { + psError(PS_ERR_UNKNOWN, true, "no valid mean stats option selected"); + return false; + } + if (!stdevOption) { + psError(PS_ERR_UNKNOWN, true, "no valid stdev stats option selected"); + return false; + } + + // clipping range defined by min and max and/or clipSigma + psF32 minClipSigma; + psF32 maxClipSigma; + if (isfinite(stats->max)) { + maxClipSigma = fabs(stats->max); + } else { + maxClipSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minClipSigma = fabs(stats->min); + } else { + minClipSigma = fabs(stats->clipSigma); + } + psVector *resid = psVectorAlloc(f->n, PS_TYPE_F64); + + psTrace("psLib.math", 4, "stats->clipIter is %d\n", stats->clipIter); + psTrace("psLib.math", 4, "(minClipSigma, maxClipSigma) is (%.2f, %.2f)\n", minClipSigma, maxClipSigma); + + // + for (psS32 N = 0; N < stats->clipIter; N++) { + psTrace("psLib.math", 6, "Loop iteration %d. Calling psVectorFitPolynomial1D()\n", N); + psS32 Nkeep = 0; + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + psTrace("psLib.math", 6, "mask[%d] is %d\n", i, mask->data.U8[i]); + } + } + } + if (!psVectorFitPolynomial1D(poly, mask, maskValue, f, fErr, x)) { + psError(PS_ERR_UNKNOWN, false, "Could not fit polynomial. Returning false.\n"); + if (xIn == NULL) { + psFree(x); + } + return false; + } + + psVector *fit = psPolynomial1DEvalVector(poly, x); + if (fit == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not call psPolynomial3DEvalVector(). Returning false.\n"); + psFree(resid); + return false; + } + for (psS32 i = 0 ; i < f->n ; i++) { + if (f->type.type == PS_TYPE_F64) { + resid->data.F64[i] = f->data.F64[i] - fit->data.F64[i]; + } else { + resid->data.F64[i] = (psF64) (f->data.F32[i] - fit->data.F32[i]); + } + } + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + if (!((mask != NULL) && (mask->data.U8[i] & maskValue))) { + psTrace("psLib.math", 6, "(f, fit)[%d] is (%f, %f). resid is (%f)\n", + i, f->data.F32[i], fit->data.F32[i], resid->data.F64[i]); + } + } + } + } + + if (!psVectorStats(stats, resid, NULL, mask, maskValue)) { + psError(PS_ERR_UNKNOWN, false, "Could not compute statistics on the resid vector. Returning false.\n"); + psFree(resid); + psFree(fit); + return false; + } + + double meanValue = psStatsGetValue (stats, meanOption); + double stdevValue = psStatsGetValue (stats, stdevOption); + + psTrace("psLib.math", 5, "Mean is %f\n", meanValue); + psTrace("psLib.math", 5, "Stdev is %f\n", stdevValue); + psF32 minClipValue = -minClipSigma*stdevValue; + psF32 maxClipValue = +maxClipSigma*stdevValue; + + // set mask if pts are not valid + // we are masking out any point which is out of range + // recovery is not allowed with this scheme + for (psS32 i = 0; i < resid->n; i++) { + if ((mask != NULL) && (mask->data.U8[i] & maskValue)) { + continue; + } + + if ((resid->data.F64[i] - meanValue > maxClipValue) || (resid->data.F64[i] - meanValue < minClipValue)) { + if (f->type.type == PS_TYPE_F64) { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F64[i], i, resid->data.F64[i]); + } else { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F32[i], i, resid->data.F64[i]); + } + + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + Nkeep++; + } + + // + // We should probably exit this loop if no new elements were masked + // since the polynomial fit won't change. + // + psTrace("psLib.math", 6, "keeping %d of %ld pts for fit\n", Nkeep, x->n); + stats->clippedNvalues = Nkeep; + psFree(fit); + } + + // Free psVectors that were created for NULL arguments. + if (xIn == NULL) { + psFree(x); + } + // Free other local temporary variables + psFree(resid); + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return true; +} + + +/****************************************************************************** + ****************************************************************************** + 2-D Vector Code. + ****************************************************************************** + *****************************************************************************/ + +/****************************************************************************** +VectorFitPolynomial2DOrd(myPoly, *mask, maskValue, *f, *fErr, *x, *y): This is +a private routine which will fit a 2-D polynomial to a set of (x, y)-(f) +pairs. All non-NULL vectors must be of type PS_TYPE_F64. + + *****************************************************************************/ +static bool VectorFitPolynomial2DOrd( + psPolynomial2D* myPoly, + const psVector* mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(myPoly, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nX, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nY, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE(f, PS_TYPE_F64, false); + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, PS_TYPE_F64, false); + } + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + + // Number of polynomial terms + int nXterm = 1 + myPoly->nX; // Number of terms in x + int nYterm = 1 + myPoly->nY; // Number of terms in y + int nTerm = nXterm * nYterm; // Total number of terms + + psImage *A = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); // Least-squares matrix + psVector *B = psVectorAlloc(nTerm, PS_TYPE_F64); // Least-squares vector + + // Initialize data structures. + if (!psImageInit(A, 0.0) || !psVectorInit(B, 0.0)) { + psError(PS_ERR_UNKNOWN, false, "Could initialize data structures A, B. Returning NULL.\n"); + psFree(A); + psFree(B); + psTrace("psLib.math", 4, "---- %s() End ----\n", __func__); + return false; + } + + // Dereference stuff, to make the loop go faster + psF64 **matrix = A->data.F64; // Dereference the least-squares matrix + psF64 *vector = B->data.F64; // Dereference the least-squares vector + psU8 **termMask = myPoly->mask; // Dereference mask for polynomial terms + psU8 *dataMask = NULL; // Dereference mask for data + if (mask) { + dataMask = mask->data.U8; + } + psF64 *xData = x->data.F64; // Dereference x + psF64 *yData = y->data.F64; // Dereference y + psF64 *fData = f->data.F64; // Dereference f + psF64 *fErrData = NULL; // Dereference fErr + if (fErr) { + fErrData = fErr->data.F64; + } + + // Build the least-squares matrix and vector + psImage *xySums = NULL; // The sums: 1, x, x^2, ... x^(2n+1), y, xy, x^2y, ... x^(2n+1) + for (int k = 0; k < x->n; k++) { + if (dataMask && dataMask[k] & maskValue) { + continue; + } + xySums = BuildSums2D(xySums, xData[k], yData[k], nXterm, nYterm); + psF64 **sums = xySums->data.F64;// Dereference sums + + double wt; // Weight + if (!fErrData) { + wt = 1.0; + } else { + // this filters fErr == 0 values + wt = (fErrData[k] == 0.0) ? 0.0 : 1.0 / PS_SQR(fErrData[k]); + } + + // Iterating over the matrix + for (int i = 0; i < nTerm; i++) { + int l = i / nYterm; // x index + int m = i % nYterm; // y index + if (termMask[l][m]) { + matrix[i][i] = 1.0; + continue; + } + vector[i] += fData[k] * sums[l][m] * wt; + matrix[i][i] += sums[2*l][2*m] * wt; // The diagonal entry + for (int j = i + 1; j < nTerm; j++) { // Doing the upper diagonal only: we will use symmetry + int p = j / nYterm; // x index + int q = j % nYterm; // y index + if (termMask[p][q]) { + continue; + } + double value = sums[l+p][m+q] * wt; // Value to add in + matrix[i][j] += value; + matrix[j][i] += value; // Taking advantage of the symmetry + } + } + } + psFree(xySums); + + if (!psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Could not solve linear equations. Returning NULL.\n"); + psFree(A); + psFree(B); + return false; + } + + // select the appropriate solution entries + for (int i = 0; i < nTerm; i++) { + int l = i / nYterm; // x index + int m = i % nYterm; // y index + myPoly->coeff[l][m] = B->data.F64[i]; + myPoly->coeffErr[l][m] = sqrt(A->data.F64[i][i]); + } + psFree(A); + psFree(B); + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return true; +} + +/****************************************************************************** +psVectorFitPolynomial2D(): This routine fits a 2D polynomial of arbitrary +degree (specified in poly) to the data points (x, y)-(f) and returns that +polynomial. Types F32 and F64 are supported, however, type F32 is done via +vector conversion only. + *****************************************************************************/ +bool psVectorFitPolynomial2D( + psPolynomial2D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y) +{ + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(fErr, false); + } + + // Convert input vectors to F64 if necessary. + psVector *f64 = (f->type.type == PS_TYPE_F64) ? (psVector *) f : psVectorCopy(NULL, f, PS_TYPE_F64); + psVector *x64 = (x->type.type == PS_TYPE_F64) ? (psVector *) x : psVectorCopy(NULL, x, PS_TYPE_F64); + psVector *y64 = (y->type.type == PS_TYPE_F64) ? (psVector *) y : psVectorCopy(NULL, y, PS_TYPE_F64); + + psVector *fErr64 = NULL; + if (fErr != NULL) { + fErr64 = (fErr->type.type == PS_TYPE_F64) ? (psVector *) fErr : psVectorCopy(NULL, fErr, PS_TYPE_F64); + } + + bool result = true; + + switch (poly->type) { + case PS_POLYNOMIAL_ORD: + result = VectorFitPolynomial2DOrd(poly, mask, maskValue, f64, fErr64, x64, y64); + if (!result) { + psError(PS_ERR_UNKNOWN, true, "Could not fit polynomial. Returning NULL.\n"); + } + break; + case PS_POLYNOMIAL_CHEB: + if (mask != NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: ignoring mask and maskValue with Chebyshev polynomials.\n"); + } + psError(PS_ERR_UNKNOWN, true, "2-D Chebyshev polynomial vector fitting has not been implemented. Returning NULL.\n"); + result = false; + break; + default: + psError(PS_ERR_UNKNOWN, true, "Incorrect polynomial type. Returning NULL.\n"); + result = false; + break; + } + + // Free psVectors that were created for NULL arguments. + PS_FREE_TEMP_F64_VECTOR (f, f64); + PS_FREE_TEMP_F64_VECTOR (x, x64); + PS_FREE_TEMP_F64_VECTOR (y, y64); + PS_FREE_TEMP_F64_VECTOR (fErr, fErr64); + + return result; +} + +bool psVectorClipFitPolynomial2D( + psPolynomial2D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + PS_ASSERT_PTR_NON_NULL(stats, false); + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_TYPE(x, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_TYPE(y, f->type.type, false); + + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, f->type.type, false); + } + + // the user supplies one of various stats option pairs, + // determine the desired mean and stdev STATS options: + // XXX enforce consistency? + // XXX psStatsGetValue() probably has inverted precedence + psStatsOptions meanOption = stats->options & (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | PS_STAT_ROBUST_MEDIAN | PS_STAT_CLIPPED_MEAN | PS_STAT_FITTED_MEAN | PS_STAT_FITTED_MEAN_V2); + psStatsOptions stdevOption = stats->options & (PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_STDEV | PS_STAT_CLIPPED_STDEV | PS_STAT_FITTED_STDEV | PS_STAT_FITTED_STDEV_V2); + if (!meanOption) { + psError(PS_ERR_UNKNOWN, true, "no valid mean stats option selected"); + return false; + } + if (!stdevOption) { + psError(PS_ERR_UNKNOWN, true, "no valid stdev stats option selected"); + return false; + } + + // clipping range defined by min and max and/or clipSigma + psF32 minClipSigma; + psF32 maxClipSigma; + if (isfinite(stats->max)) { + maxClipSigma = fabs(stats->max); + } else { + maxClipSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minClipSigma = fabs(stats->min); + } else { + minClipSigma = fabs(stats->clipSigma); + } + psVector *resid = psVectorAlloc(f->n, PS_TYPE_F64); + + psTrace("psLib.math", 4, "stats->clipIter is %d\n", stats->clipIter); + psTrace("psLib.math", 4, "(minClipSigma, maxClipSigma) is (%.2f, %.2f)\n", minClipSigma, maxClipSigma); + + for (psS32 N = 0; N < stats->clipIter; N++) { + psTrace("psLib.math", 6, "Loop iteration %d. Calling psVectorFitPolynomial1D()\n", N); + psS32 Nkeep = 0; + if (psTraceGetLevel("psLib.math") >= 7) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + psTrace("psLib.math", 7, "mask[%d] is %d\n", i, mask->data.U8[i]); + } + } + } + + if (!psVectorFitPolynomial2D(poly, mask, maskValue, f, fErr, x, y)) { + psError(PS_ERR_UNKNOWN, false, "Could not fit a polynomial to the data. Returning false.\n"); + psFree(resid); + return false; + } + + psVector *fit = psPolynomial2DEvalVector(poly, x, y); + if (fit == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not call psPolynomial3DEvalVector(). Returning NULL.\n"); + psFree(resid); + return false; + } + + for (psS32 i = 0 ; i < f->n ; i++) { + if (f->type.type == PS_TYPE_F64) { + resid->data.F64[i] = f->data.F64[i] - fit->data.F64[i]; + } else { + resid->data.F64[i] = (psF64) (f->data.F32[i] - fit->data.F32[i]); + } + } + + if (psTraceGetLevel("psLib.math") >= 7) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + if (!((mask != NULL) && (mask->data.U8[i] & maskValue))) { + psTrace("psLib.math", 7, "(f, fit)[%d] is (%f, %f). resid is (%f)\n", + i, f->data.F32[i], fit->data.F32[i], resid->data.F64[i]); + } + } + } + } + + if (!psVectorStats(stats, resid, NULL, mask, maskValue)) { + psError(PS_ERR_UNKNOWN, false, "Could not compute statistics on the resid vector. Returning NULL.\n"); + psFree(resid); + psFree(fit); + return false; + } + + double meanValue = psStatsGetValue (stats, meanOption); + double stdevValue = psStatsGetValue (stats, stdevOption); + + psTrace("psLib.math", 5, "Mean is %f\n", meanValue); + psTrace("psLib.math", 5, "Stdev is %f\n", stdevValue); + psF32 minClipValue = -minClipSigma*stdevValue; + psF32 maxClipValue = +maxClipSigma*stdevValue; + + // set mask if pts are not valid + // we are masking out any point which is out of range + // recovery is not allowed with this scheme + for (psS32 i = 0; i < resid->n; i++) { + if ((mask != NULL) && (mask->data.U8[i] & maskValue)) { + continue; + } + + if ((resid->data.F64[i] - meanValue > maxClipValue) || (resid->data.F64[i] - meanValue < minClipValue)) { + if (fit->type.type == PS_TYPE_F64) { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F64[i], i, resid->data.F64[i]); + } else { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F32[i], i, resid->data.F64[i]); + } + + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + Nkeep++; + } + psTrace("psLib.math", 4, "keeping %d of %ld pts for fit\n", Nkeep, x->n); + stats->clippedNvalues = Nkeep; + psFree(fit); + } + // Free local temporary variables + psFree(resid); + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return true; +} + + +/****************************************************************************** + ****************************************************************************** + 3-D Vector Code. + ****************************************************************************** + *****************************************************************************/ + +/****************************************************************************** +VectorFitPolynomial3DOrd(myPoly, *mask, maskValue, *f, *fErr, *x, *y, *z): +This is a private routine which will fit a 3-D polynomial to a set of (x, +y, z)-(f) pairs. All non-NULL vectors must be of type PS_TYPE_F64. + + *****************************************************************************/ +static bool VectorFitPolynomial3DOrd( + psPolynomial3D* myPoly, + const psVector* mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(myPoly, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nX, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nY, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nZ, false); + + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE(f, PS_TYPE_F64, false); + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, PS_TYPE_F64, false); + } + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTOR_TYPE(z, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + + int nXterm = 1 + myPoly->nX; // Number of x terms + int nYterm = 1 + myPoly->nY; // Number of y terms + int nZterm = 1 + myPoly->nZ; // Number of z terms + int nTerm = nXterm * nYterm * nZterm; // Total number of terms + int nData = x->n; // Number of data points + psImage *A = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); // Least-squares matrix + psVector *B = psVectorAlloc(nTerm, PS_TYPE_F64); // Least-squares vector + + // Initialize data structures. + if (!psImageInit(A, 0.0) || !psVectorInit(B, 0.0)) { + psError(PS_ERR_UNKNOWN, false, "Could initialize data structures A, B. Returning NULL.\n"); + psFree(A); + psFree(B); + psTrace("psLib.math", 4, "---- %s() End ----\n", __func__); + return false; + } + + // Dereference points for speed in the loop + psF64 **matrix = A->data.F64; // Least-squares matrix + psF64 *vector = B->data.F64; // Least-squares vector + psF64 *xData = x->data.F64; // x + psF64 *yData = y->data.F64; // y + psF64 *zData = z->data.F64; // z + psF64 *fData = f->data.F64; // f + psF64 *fErrData = NULL; // Error in f + if (fErr) { + fErrData = fErr->data.F64; + } + psU8 *dataMask = NULL; // Mask for data + if (mask) { + dataMask = mask->data.U8; + } + psU8 ***termMask = myPoly->mask; // Mask for polynomial terms + int nYZterm = nYterm * nZterm; // Multiplication of the numbers, to calculate the index + + // Build the B and A data structs. + psF64 ***Sums = NULL; // Sums look like: 1, x, x^2, ... x^(2n+1), y, xy, x^2y, ... x^(2n+1)*y, ... + for (int k = 0; k < nData; k++) { + if (dataMask && dataMask[k] & maskValue) { + continue; + } + + Sums = BuildSums3D(Sums, xData[k], yData[k], zData[k], nXterm, nYterm, nZterm); + + double wt; + if (fErr == NULL) { + wt = 1.0; + } else { + // this filters fErr == 0 values + wt = (fErr->data.F64[k] == 0.0) ? 0.0 : 1.0 / PS_SQR(fErrData[k]); + } + + for (int i = 0; i < nTerm; i++) { + int ix = i / nYZterm; // x index + int iy = (i % nYZterm) / nZterm; // y index + int iz = (i % nYZterm) % nZterm; // z index + if (termMask[ix][iy][iz]) { + matrix[i][i] = 1.0; + continue; + } + + vector[i] += fData[k] * Sums[ix][iy][iz] * wt; + matrix[i][i] += Sums[2*ix][2*iy][2*iz] * wt; + for (int j = i + 1; j < nTerm; j++) { + int jx = j / (nYZterm); // x index + int jy = (j % nYZterm) / nZterm; // y index + int jz = (j % nYZterm) % nZterm; // z index + if (termMask[jx][jy][jz]) { + continue; + } + double value = Sums[ix+jx][iy+jy][iz+jz] * wt; + matrix[i][j] += value; + matrix[j][i] += value; + } + } + } + + // Free the sums + for (psS32 ix = 0; ix < 2*nXterm; ix++) { + for (psS32 iy = 0; iy < 2*nYterm; iy++) { + psFree(Sums[ix][iy]); + } + psFree(Sums[ix]); + } + psFree(Sums); + + + // XXX: rel10_ifa used psMatrixGJSolve(). However, this failed tests. So, I'm using psMatrixLUD(). + if (USE_GAUSS_JORDAN) { + // does the solution in place + // The matrices were overflowing, so I switched to LUD. + if (!psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Failed to perform GaussJordan elimination.\n"); + goto escape_GJ; + } + // select the appropriate solution entries + for (int i = 0; i < nTerm; i++) { + int ix = i / nYZterm; // x index + int iy = (i % nYZterm) / nZterm; // y index + int iz = (i % nYZterm) % nZterm; // z index + myPoly->coeff[ix][iy][iz] = B->data.F64[i]; + myPoly->coeffErr[ix][iy][iz] = sqrt(A->data.F64[i][i]); + } + } else { + // LUD version of the fit + psImage *ALUD = NULL; + psVector* outPerm = NULL; + psVector* coeffs = NULL; + + ALUD = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); + ALUD = psMatrixLUD(ALUD, &outPerm, A); + if (ALUD == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not do LUD decomposition on matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + coeffs = psMatrixLUSolve(coeffs, ALUD, B, outPerm); + if (coeffs == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not solve LUD matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + // select the appropriate solution entries + for (psS32 ix = 0; ix < nXterm; ix++) { + for (psS32 iy = 0; iy < nYterm; iy++) { + for (psS32 iz = 0; iz < nZterm; iz++) { + psS32 nx = ix+iy*nXterm+iz*nXterm*nYterm; + myPoly->coeff[ix][iy][iz] = coeffs->data.F64[nx]; + // XXX myPoly->coeffErr[ix][iy][iz] = sqrt(A->data.F64[nx][nx]); + // XXX this is wrong: A is not replaced with inverse(A), as for GaussJordan + } + } + } + } + } + + psFree(ALUD); + psFree(coeffs); + psFree(outPerm); + } + psFree(A); + psFree(B); + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return true; + +escape_LUD: + psFree(A); + psFree(B); + return false; + +escape_GJ: + + psFree(A); + psFree(B); + return false; +} + +/****************************************************************************** +psVectorFitPolynomial3D(): This routine fits a 3D polynomial of arbitrary +degree (specified in poly) to the data points (x, y, z)-(f) and returns that +polynomial. Types F32 and F64 are supported, however, type F32 is done via +vector conversion only. + *****************************************************************************/ +bool psVectorFitPolynomial3D( + psPolynomial3D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z) +{ + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(fErr, false); + } + + // Convert input vectors to F64 if necessary. + psVector *f64 = (f->type.type == PS_TYPE_F64) ? (psVector *) f : psVectorCopy(NULL, f, PS_TYPE_F64); + psVector *x64 = (x->type.type == PS_TYPE_F64) ? (psVector *) x : psVectorCopy(NULL, x, PS_TYPE_F64); + psVector *y64 = (y->type.type == PS_TYPE_F64) ? (psVector *) y : psVectorCopy(NULL, y, PS_TYPE_F64); + psVector *z64 = (z->type.type == PS_TYPE_F64) ? (psVector *) z : psVectorCopy(NULL, z, PS_TYPE_F64); + + psVector *fErr64 = NULL; + if (fErr != NULL) { + fErr64 = (fErr->type.type == PS_TYPE_F64) ? (psVector *) fErr : psVectorCopy(NULL, fErr, PS_TYPE_F64); + } + + bool result = true; + + switch (poly->type) { + case PS_POLYNOMIAL_ORD: + result = VectorFitPolynomial3DOrd(poly, mask, maskValue, f64, fErr64, x64, y64, z64); + if (!result) { + psError(PS_ERR_UNKNOWN, true, "Could not fit polynomial. Returning NULL.\n"); + } + break; + case PS_POLYNOMIAL_CHEB: + if (mask != NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: ignoring mask and maskValue with Chebyshev polynomials.\n"); + } + psError(PS_ERR_UNKNOWN, true, "3-D Chebyshev polynomial vector fitting has not been implemented. Returning NULL.\n"); + result = false; + break; + default: + psError(PS_ERR_UNKNOWN, true, "Incorrect polynomial type. Returning NULL.\n"); + result = false; + break; + } + + // Free psVectors that were created for NULL arguments. + PS_FREE_TEMP_F64_VECTOR (f, f64); + PS_FREE_TEMP_F64_VECTOR (x, x64); + PS_FREE_TEMP_F64_VECTOR (y, y64); + PS_FREE_TEMP_F64_VECTOR (z, z64); + PS_FREE_TEMP_F64_VECTOR (fErr, fErr64); + + return result; +} + +bool psVectorClipFitPolynomial3D( + psPolynomial3D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + PS_ASSERT_PTR_NON_NULL(stats, false); + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_TYPE(x, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_TYPE(y, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + PS_ASSERT_VECTOR_TYPE(z, f->type.type, false); + + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, f->type.type, false); + } + + // the user supplies one of various stats option pairs, + // determine the desired mean and stdev STATS options: + // XXX enforce consistency? + // XXX psStatsGetValue() probably has inverted precedence + psStatsOptions meanOption = stats->options & (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | PS_STAT_ROBUST_MEDIAN | PS_STAT_CLIPPED_MEAN | PS_STAT_FITTED_MEAN | PS_STAT_FITTED_MEAN_V2); + psStatsOptions stdevOption = stats->options & (PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_STDEV | PS_STAT_CLIPPED_STDEV | PS_STAT_FITTED_STDEV | PS_STAT_FITTED_STDEV_V2); + if (!meanOption) { + psError(PS_ERR_UNKNOWN, true, "no valid mean stats option selected"); + return false; + } + if (!stdevOption) { + psError(PS_ERR_UNKNOWN, true, "no valid stdev stats option selected"); + return false; + } + + // clipping range defined by min and max and/or clipSigma + psF32 minClipSigma; + psF32 maxClipSigma; + if (isfinite(stats->max)) { + maxClipSigma = fabs(stats->max); + } else { + maxClipSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minClipSigma = fabs(stats->min); + } else { + minClipSigma = fabs(stats->clipSigma); + } + psVector *resid = psVectorAlloc(f->n, PS_TYPE_F64); + + psTrace("psLib.math", 4, "stats->clipIter is %d\n", stats->clipIter); + psTrace("psLib.math", 4, "(minClipSigma, maxClipSigma) is (%.2f, %.2f)\n", minClipSigma, maxClipSigma); + + for (psS32 N = 0; N < stats->clipIter; N++) { + psTrace("psLib.math", 6, "Loop iteration %d. Calling psVectorFitPolynomial1D()\n", N); + psS32 Nkeep = 0; + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + psTrace("psLib.math", 6, "mask[%d] is %d\n", i, mask->data.U8[i]); + } + } + } + + if (!psVectorFitPolynomial3D(poly, mask, maskValue, f, fErr, x, y, z)) { + psError(PS_ERR_UNKNOWN, false, "Could not fit a polynomial to the data. Returning NULL.\n"); + psFree(resid); + return false; + } + psVector *fit = psPolynomial3DEvalVector(poly, x, y, z); + if (fit == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not call psPolynomial3DEvalVector(). Returning NULL.\n"); + psFree(resid); + return false; + } + for (psS32 i = 0 ; i < f->n ; i++) { + if (f->type.type == PS_TYPE_F64) { + resid->data.F64[i] = f->data.F64[i] - fit->data.F64[i]; + } else { + resid->data.F64[i] = ((psF64) f->data.F32[i]) - fit->data.F64[i]; + } + } + + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + if (!((mask != NULL) && (mask->data.U8[i] & maskValue))) { + psTrace("psLib.math", 6, "(f, fit)[%d] is (%f, %f). resid is (%f)\n", + i, f->data.F32[i], fit->data.F32[i], resid->data.F64[i]); + } + } + } + } + + if (!psVectorStats(stats, resid, NULL, mask, maskValue)) { + psError(PS_ERR_UNKNOWN, false, "Could not compute statistics on the resid vector. Returning NULL.\n"); + psFree(resid); + psFree(fit); + return false; + } + + double meanValue = psStatsGetValue (stats, meanOption); + double stdevValue = psStatsGetValue (stats, stdevOption); + + psTrace("psLib.math", 5, "Mean is %f\n", meanValue); + psTrace("psLib.math", 5, "Stdev is %f\n", stdevValue); + psF32 minClipValue = -minClipSigma*stdevValue; + psF32 maxClipValue = +maxClipSigma*stdevValue; + + // set mask if pts are not valid + // we are masking out any point which is out of range + // recovery is not allowed with this scheme + for (psS32 i = 0; i < resid->n; i++) { + if ((mask != NULL) && (mask->data.U8[i] & maskValue)) { + continue; + } + + if ((resid->data.F64[i] - meanValue > maxClipValue) || (resid->data.F64[i] - meanValue < minClipValue)) { + if (f->type.type == PS_TYPE_F64) { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F64[i], i, resid->data.F64[i]); + } else { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F32[i], i, resid->data.F64[i]); + } + + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + Nkeep++; + } + psTrace("psLib.math", 6, "keeping %d of %ld pts for fit\n", Nkeep, x->n); + stats->clippedNvalues = Nkeep; + psFree(fit); + } + // Free local temporary variables + psFree(resid); + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return true; +} + +/****************************************************************************** + ****************************************************************************** + 4-D Vector Code. + ****************************************************************************** + *****************************************************************************/ +/****************************************************************************** +VectorFitPolynomial4DOrd(myPoly, *mask, maskValue, *f, *fErr, *x, *y, *z, *t): +This is a private routine which will fit a 4-D polynomial to a set of (x, +y, z, t)-(f) pairs. All non-NULL vectors must be of type PS_TYPE_F64. + + *****************************************************************************/ +static bool VectorFitPolynomial4DOrd( + psPolynomial4D* myPoly, + const psVector* mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(myPoly, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nX, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nY, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nZ, false); + PS_ASSERT_INT_NONNEGATIVE(myPoly->nT, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE(f, PS_TYPE_F64, false); + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, PS_TYPE_F64, false); + } + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTOR_TYPE(z, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + PS_ASSERT_VECTOR_NON_NULL(t, false); + PS_ASSERT_VECTOR_TYPE(t, PS_TYPE_F64, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, t, false); + if (mask) { + PS_ASSERT_VECTORS_SIZE_EQUAL(y, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + + + int nXterm = 1 + myPoly->nX; // Number of x terms + int nYterm = 1 + myPoly->nY; // Number of y terms + int nZterm = 1 + myPoly->nZ; // Number of z terms + int nTterm = 1 + myPoly->nT; // Number of t terms + int nTerm = nXterm * nYterm * nZterm * nTterm; // Total number of terms + int nData = x->n; // Number of data points + psImage *A = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); // Least-squares matrix + psVector *B = psVectorAlloc(nTerm, PS_TYPE_F64); // Least-squares vector + + // Initialize data structures. + if (!psImageInit(A, 0.0) || !psVectorInit(B, 0.0)) { + psError(PS_ERR_UNKNOWN, false, "Could initialize data structures A, B. Returning NULL.\n"); + psFree(A); + psFree(B); + psTrace("psLib.math", 4, "---- %s() End ----\n", __func__); + return false; + } + + // Dereference points for speed in the loop + psF64 **matrix = A->data.F64; // Least-squares matrix + psF64 *vector = B->data.F64; // Least-squares vector + psF64 *xData = x->data.F64; // x + psF64 *yData = y->data.F64; // y + psF64 *zData = z->data.F64; // z + psF64 *tData = t->data.F64; // t + psF64 *fData = f->data.F64; // f + psF64 *fErrData = NULL; // Error in f + if (fErr) { + fErrData = fErr->data.F64; + } + psU8 *dataMask = NULL; // Mask for data + if (mask) { + dataMask = mask->data.U8; + } + psU8 ****termMask = myPoly->mask; // Mask for polynomial terms + int nYZTterm = nYterm * nZterm * nTterm; // Multiplication of the numbers, for calculating the index + int nZTterm = nZterm * nTterm; // Multiplication of the numbers, for calculating the index + + // Build the B and A data structs. + psF64 ****Sums = NULL; // Sums look like: 1, x, x^2, ... x^(2n+1), y, xy, x^2y, ... x^(2n+1)*y, ... + for (int k = 0; k < nData; k++) { + if (dataMask && dataMask[k] & maskValue) { + continue; + } + + Sums = BuildSums4D(Sums, xData[k], yData[k], zData[k], tData[k], nXterm, nYterm, nZterm, nTterm); + + double wt; + if (fErr == NULL) { + wt = 1.0; + } else { + // this filters fErr == 0 values + wt = (fErr->data.F64[k] == 0.0) ? 0.0 : 1.0 / PS_SQR(fErrData[k]); + } + + for (int i = 0; i < nTerm; i++) { + int ix = i / (nYZTterm); // x index + int iy = (i % (nYZTterm)) / (nZTterm); // y index + int iz = ((i % (nYZTterm)) % (nZTterm)) / nTterm; // z index + int it = ((i % (nYZTterm)) % (nZTterm)) % nTterm; // t index + if (termMask[ix][iy][iz][it]) { + matrix[i][i] = 1.0; + continue; + } + + vector[i] += fData[k] * Sums[ix][iy][iz][it] * wt; + matrix[i][i] += Sums[2*ix][2*iy][2*iz][2*it] * wt; + for (int j = i + 1; j < nTerm; j++) { + int jx = j / nYZTterm; // x index + int jy = (j % nYZTterm) / nZTterm; // y index + int jz = ((j % nYZTterm) % nZTterm) / nTterm; // z index + int jt = ((j % nYZTterm) % nZTterm) % nTterm; // t index + if (termMask[jx][jy][jz][jt]) { + continue; + } + double value = Sums[ix+jx][iy+jy][iz+jz][it+jt] * wt; + matrix[i][j] += value; + matrix[j][i] += value; + } + } + } + + // Free the sums + if (Sums == NULL) { + assert (nData == 0); + } else { + for (int ix = 0; ix < 2*nXterm; ix++) { + for (int iy = 0; iy < 2*nYterm; iy++) { + for (int iz = 0; iz < 2*nZterm; iz++) { + psFree(Sums[ix][iy][iz]); + } + psFree(Sums[ix][iy]); + } + psFree(Sums[ix]); + } + psFree(Sums); + } + + // XXX: rel10_ifa used psMatrixGJSolve(). However, this failed tests. So, I'm using psMatrixLUD(). + if (USE_GAUSS_JORDAN) { + // does the solution in place + // The GaussJordan version was overflowing, so I'm using LUD. + if (!psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Failed to perform GaussJordan elimination.\n"); + goto escape_GJ; + } + + // select the appropriate solution entries + for (int i = 0; i < nTerm; i++) { + int ix = i / nYZTterm; // x index + int iy = (i % nYZTterm) / nZTterm; // y index + int iz = ((i % nYZTterm) % nZTterm) / nTterm; // z index + int it = ((i % nYZTterm) % nZTterm) % nTterm; // t index + myPoly->coeff[ix][iy][iz][it] = B->data.F64[i]; + myPoly->coeffErr[ix][iy][iz][it] = sqrt(A->data.F64[i][i]); + } + } else { + // LUD version of the fit + psImage *ALUD = NULL; + psVector* outPerm = NULL; + psVector* coeffs = NULL; + + ALUD = psImageAlloc(nTerm, nTerm, PS_TYPE_F64); + ALUD = psMatrixLUD(ALUD, &outPerm, A); + if (ALUD == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not do LUD decomposition on matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + coeffs = psMatrixLUSolve(coeffs, ALUD, B, outPerm); + if (coeffs == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not solve LUD matrix. Returning NULL.\n"); + goto escape_LUD; + } else { + // select the appropriate solution entries + for (psS32 ix = 0; ix < nXterm; ix++) { + for (psS32 iy = 0; iy < nYterm; iy++) { + for (psS32 iz = 0; iz < nZterm; iz++) { + for (psS32 it = 0; it < nTterm; it++) { + psS32 nx = ix+iy*nXterm+iz*nXterm*nYterm+it*nXterm*nYterm*nZterm; + myPoly->coeff[ix][iy][iz][it] = coeffs->data.F64[nx]; + // myPoly->coeffErr[ix][iy][iz][it] = sqrt(A->data.F64[nx][nx]); + // XXX this is wrong: LUD does not supply inverse(A) + } + } + } + } + } + } + psFree(ALUD); + psFree(coeffs); + psFree(outPerm); + } + psFree(A); + psFree(B); + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return true; + +escape_LUD: + psFree(A); + psFree(B); + return false; + +escape_GJ: + psFree(A); + psFree(B); + return false; +} + +/****************************************************************************** +psVectorFitPolynomial4D(): This routine fits a 4D polynomial of arbitrary +degree (specified in poly) to the data points (x, y, z, t)-(f) and returns +that polynomial. Types F32 and F64 are supported, however, type F32 is done +via vector conversion only. + *****************************************************************************/ +bool psVectorFitPolynomial4D( + psPolynomial4D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t) +{ + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + PS_ASSERT_VECTOR_NON_NULL(t, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, t, false); + if (mask) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + } + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(fErr, false); + } + + // Convert input vectors to F64 if necessary. + psVector *f64 = (f->type.type == PS_TYPE_F64) ? (psVector *) f : psVectorCopy(NULL, f, PS_TYPE_F64); + psVector *x64 = (x->type.type == PS_TYPE_F64) ? (psVector *) x : psVectorCopy(NULL, x, PS_TYPE_F64); + psVector *y64 = (y->type.type == PS_TYPE_F64) ? (psVector *) y : psVectorCopy(NULL, y, PS_TYPE_F64); + psVector *z64 = (z->type.type == PS_TYPE_F64) ? (psVector *) z : psVectorCopy(NULL, z, PS_TYPE_F64); + psVector *t64 = (t->type.type == PS_TYPE_F64) ? (psVector *) t : psVectorCopy(NULL, t, PS_TYPE_F64); + + psVector *fErr64 = NULL; + if (fErr != NULL) { + fErr64 = (fErr->type.type == PS_TYPE_F64) ? (psVector *) fErr : psVectorCopy(NULL, fErr, PS_TYPE_F64); + } + + bool result = true; + + switch (poly->type) { + case PS_POLYNOMIAL_ORD: + result = VectorFitPolynomial4DOrd(poly, mask, maskValue, f64, fErr64, x64, y64, z64, t64); + if (!result) { + psError(PS_ERR_UNKNOWN, true, "Could not fit polynomial. Returning NULL.\n"); + } + break; + case PS_POLYNOMIAL_CHEB: + if (mask != NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: ignoring mask and maskValue with Chebyshev polynomials.\n"); + } + psError(PS_ERR_UNKNOWN, true, "4-D Chebyshev polynomial vector fitting has not been implemented. Returning NULL.\n"); + result = false; + break; + default: + psError(PS_ERR_UNKNOWN, true, "Incorrect polynomial type. Returning NULL.\n"); + result = false; + break; + } + + // Free psVectors that were created for NULL arguments. + PS_FREE_TEMP_F64_VECTOR (f, f64); + PS_FREE_TEMP_F64_VECTOR (x, x64); + PS_FREE_TEMP_F64_VECTOR (y, y64); + PS_FREE_TEMP_F64_VECTOR (z, z64); + PS_FREE_TEMP_F64_VECTOR (t, t64); + PS_FREE_TEMP_F64_VECTOR (fErr, fErr64); + + return result; +} + + +bool psVectorClipFitPolynomial4D( + psPolynomial4D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_POLY_NON_NULL(poly, false); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, false); + PS_ASSERT_PTR_NON_NULL(stats, false); + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, false); + + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, false); + PS_ASSERT_VECTOR_TYPE(x, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, false); + PS_ASSERT_VECTOR_TYPE(y, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(z, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, false); + PS_ASSERT_VECTOR_TYPE(z, f->type.type, false); + + PS_ASSERT_VECTOR_NON_NULL(t, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, t, false); + PS_ASSERT_VECTOR_TYPE(t, f->type.type, false); + + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + + if (fErr != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, fErr, false); + PS_ASSERT_VECTOR_TYPE(fErr, f->type.type, false); + } + + // the user supplies one of various stats option pairs, + // determine the desired mean and stdev STATS options: + // XXX enforce consistency? + // XXX psStatsGetValue() probably has inverted precedence + psStatsOptions meanOption = stats->options & (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | PS_STAT_ROBUST_MEDIAN | PS_STAT_CLIPPED_MEAN | PS_STAT_FITTED_MEAN | PS_STAT_FITTED_MEAN_V2); + psStatsOptions stdevOption = stats->options & (PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_STDEV | PS_STAT_CLIPPED_STDEV | PS_STAT_FITTED_STDEV | PS_STAT_FITTED_STDEV_V2); + if (!meanOption) { + psError(PS_ERR_UNKNOWN, true, "no valid mean stats option selected"); + return false; + } + if (!stdevOption) { + psError(PS_ERR_UNKNOWN, true, "no valid stdev stats option selected"); + return false; + } + + // clipping range defined by min and max and/or clipSigma + psF32 minClipSigma; + psF32 maxClipSigma; + if (isfinite(stats->max)) { + maxClipSigma = fabs(stats->max); + } else { + maxClipSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minClipSigma = fabs(stats->min); + } else { + minClipSigma = fabs(stats->clipSigma); + } + psVector *resid = psVectorAlloc(f->n, PS_TYPE_F64); + + psTrace("psLib.math", 4, "stats->clipIter is %d\n", stats->clipIter); + psTrace("psLib.math", 4, "(minClipSigma, maxClipSigma) is (%.2f, %.2f)\n", minClipSigma, maxClipSigma); + + for (psS32 N = 0; N < stats->clipIter; N++) { + psTrace("psLib.math", 6, "Loop iteration %d. Calling psVectorFitPolynomial4D()\n", N); + psS32 Nkeep = 0; + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + psTrace("psLib.math", 6, "mask[%d] is %d\n", i, mask->data.U8[i]); + } + } + } + + if (!psVectorFitPolynomial4D (poly, mask, maskValue, f, fErr, x, y, z, t)) { + psError(PS_ERR_UNKNOWN, false, "Could not fit a polynomial to the data. Returning NULL.\n"); + psFree(resid); + return false; + } + + psVector *fit = psPolynomial4DEvalVector (poly, x, y, z, t); + if (fit == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not call psPolynomial4DEvalVector(). Returning NULL.\n"); + psFree(resid); + return false; + } + for (psS32 i = 0 ; i < f->n ; i++) { + if (f->type.type == PS_TYPE_F64) { + resid->data.F64[i] = f->data.F64[i] - fit->data.F64[i]; + } else { + resid->data.F64[i] = ((psF64) f->data.F32[i]) - fit->data.F64[i]; + } + } + + if (psTraceGetLevel("psLib.math") >= 6) { + if (mask != NULL) { + for (psS32 i = 0 ; i < mask->n ; i++) { + if (!((mask != NULL) && (mask->data.U8[i] & maskValue))) { + psTrace("psLib.math", 6, "(f, fit)[%d] is (%f, %f). resid is (%f)\n", + i, f->data.F32[i], fit->data.F32[i], resid->data.F64[i]); + } + } + } + } + + if (!psVectorStats (stats, resid, NULL, mask, maskValue)) { + psError(PS_ERR_UNKNOWN, false, "Could not compute statistics on the resid vector. Returning NULL.\n"); + psFree(resid); + psFree(fit); + return false; + } + + double meanValue = psStatsGetValue (stats, meanOption); + double stdevValue = psStatsGetValue (stats, stdevOption); + + psTrace("psLib.math", 5, "Mean is %f\n", meanValue); + psTrace("psLib.math", 5, "Stdev is %f\n", stdevValue); + psF32 minClipValue = -minClipSigma*stdevValue; + psF32 maxClipValue = +maxClipSigma*stdevValue; + + // set mask if pts are not valid + // we are masking out any point which is out of range + // recovery is not allowed with this scheme + for (psS32 i = 0; i < resid->n; i++) { + if ((mask != NULL) && (mask->data.U8[i] & maskValue)) { + continue; + } + + if ((resid->data.F64[i] - meanValue > maxClipValue) || (resid->data.F64[i] - meanValue < minClipValue)) { + if (f->type.type == PS_TYPE_F64) { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F64[i], i, resid->data.F64[i]); + } else { + psTrace("psLib.math", 6, "Masking element %d (%f). resid->data.F64[%d] is %f\n", + i, fit->data.F32[i], i, resid->data.F64[i]); + } + + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + Nkeep++; + } + psTrace("psLib.math", 6, "keeping %d of %ld pts for fit\n", Nkeep, x->n); + stats->clippedNvalues = Nkeep; + psFree (fit); + } + // Free local temporary variables + psFree (resid); + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return true; +} Index: /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizePolyFit.h (revision 12167) @@ -0,0 +1,137 @@ +/* @file psMinimizePolyFit.c + * @brief basic minimization functions + * + * This file will contain function prototypes for various + * 1-D polynomial fitting routines. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifndef PS_MINIMIZE_POLYFIT_H +#define PS_MINIMIZE_POLYFIT_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psVector.h" +#include "psMemory.h" +#include "psArray.h" +#include "psImage.h" +#include "psMatrix.h" +#include "psPolynomial.h" +#include "psSpline.h" +#include "psStats.h" +#include "psTrace.h" +#include "psError.h" +#include "psConstants.h" + +/** Derive a polynomial fit. + * + * psVectorFitPolynomial1d returns the polynomial that best fits the + * observations. The input parameters are a polynomial that specifies the + * fit order, myPoly, which will be altered and returned with the best-fit + * coefficients; and the observations, x, y and yErr. The independent + * variable list, x may be NULL, in which case the vector index is used. + * The dependent variable error, yErr may be null, in which case the solution + * is determined in the assumption that all data errors are equal. This + * function must be valid only for types psF32, psF64. + * + * @return psPolynomial1D* polynomial fit + */ + +bool psVectorFitPolynomial1D( + psPolynomial1D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x +); + +bool psVectorFitPolynomial2D( + psPolynomial2D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y +); + +bool psVectorFitPolynomial3D( + psPolynomial3D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z +); + +bool psVectorFitPolynomial4D( + psPolynomial4D *poly, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t +); + + +bool psVectorClipFitPolynomial1D( + psPolynomial1D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x +); + +bool psVectorClipFitPolynomial2D( + psPolynomial2D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y +); + +bool psVectorClipFitPolynomial3D( + psPolynomial3D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z +); + +bool psVectorClipFitPolynomial4D( + psPolynomial4D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t +); + +/// @} +#endif // #ifndef PS_MINIMIZE_POLYFIT_H Index: /branches/rel-1-1/psLib/src/math/psMinimizePowell.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizePowell.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizePowell.c (revision 12167) @@ -0,0 +1,797 @@ +/** @file psMinimize.c + * \brief basic minimization functions + * @ingroup Math + * + * This file will contain functions to minimize an arbitrary function at + * a data point, fit an arbitrary function to a set of data points, and + * fit a 1-D polynomial to a set of data points. + * + * @author GLG, MHPCC + * + * NOTE: XXX: The SDR is silent about data types. F32 is implemented here. + * + * @version $Revision: 1.16 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:36:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include + +#include "psMinimizePowell.h" +#include "psAssert.h" +#include "psStats.h" +#include "psImage.h" +#include "psImageStructManip.h" +#include "psLogMsg.h" +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +// This macro takes as input the vector BASE and adds a multiple of the vector +// LINE to it. We assume BASEMASK is non-null. +#define PS_VECTOR_ADD_MULTIPLE(BASE, BASEMASK, LINE, OUT, MUL) \ +for (psS32 i=0;in;i++) { \ + if (BASEMASK->data.U8[i] == 0) { \ + OUT->data.F32[i] = BASE->data.F32[i] + (MUL * LINE->data.F32[i]); \ + } else { \ + OUT->data.F32[i] = BASE->data.F32[i]; \ + } \ +} \ + +#define PS_VECTOR_F32_CHECK_ZERO_VECTOR(IN, BOOL_VAR) \ +BOOL_VAR = true; \ +for (psS32 i=0;in;i++) { \ + if (fabs(IN->data.F32[i]) >= FLT_EPSILON) { \ + BOOL_VAR = false; \ + break; \ + } \ +} \ + +#define PS_VECTOR_WITH_MASK_F32_CHECK_ZERO_VECTOR(IN, INMASK, BOOL_VAR) \ +BOOL_VAR = true; \ +for (psS32 i=0;in;i++) { \ + if ((INMASK->data.U8[i] == 0) && (fabs(IN->data.F32[i]) >= FLT_EPSILON)) { \ + BOOL_VAR = false; \ + break; \ + } \ +} \ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +/****************************************************************************** +p_psDetermineBracket(): This routine takes as input an arbitrary function, +and the parameter to vary, and the line along which it must vary. This +function produces as output a bracket [a, b, c] such that +f(param + b * line) < f(param + a * line) +f(param + b * line) < f(param + c * line) +a < b < c + +Algorithm: + +XXX completely ad hoc: +start with the user-supplied starting parameter and +call that b. Calculate a/c as a fractional amount smaller/larger than b. +Repeat this process until a local minimum is found. + +XXX: new algorithm: +start at x=0, expand in one direction until the function +decreases. Then you have two points in the bracket. Keep going until it +increases, or x is too large. If thst does not work, expand in the other +direction. + +XXX: output bracket vector should be an input as well. +*****************************************************************************/ +psVector *p_psDetermineBracket( + psVector *params, + psVector *line, + const psVector *paramMask, + const psArray *coords, + psMinimizePowellFunc func) +{ + psF32 a = 0.0; + psF32 b = 0.0; + psF32 c = 0.0; + psF32 fa = 0.0; + psF32 fb = 0.0; + psF32 fc = 0.0; + psS32 iter = 100; + psF32 aDir = 0.0; + psF32 cDir = 0.0; + psF32 new_aDir = 0.0; + psF32 new_cDir = 0.0; + psVector *bracket = psVectorAlloc(3, PS_TYPE_F32); + psF32 stepSize = PS_DETERMINE_BRACKET_STEP_SIZE; + psVector *tmp = NULL; + bool boolLineIsNull = true; + + psTrace("psLib.math", 4, "---- p_psDetermineBracket() begin ----\n"); + + // If the line vector is zero, then return NULL. + PS_VECTOR_WITH_MASK_F32_CHECK_ZERO_VECTOR(params, paramMask, boolLineIsNull); + if (boolLineIsNull == true) { + psTrace("psLib.math", 2, "p_psDetermineBracket() called with zero line vector.\n"); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end (NULL) ----\n"); + psFree(bracket); + return(NULL); + } + + tmp = psVectorAlloc(params->n, PS_TYPE_F32); + + b = 0; + a = -stepSize; + c = stepSize; + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, a); + fa = func(tmp, coords); + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, b); + fb = func(tmp, coords); + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, c); + fc = func(tmp, coords); + + if (fa < fb) { + aDir = -1; + } else { + aDir = 1; + } + + if (fc < fb) { + cDir = -1; + } else { + cDir = 1; + } + + psTrace("psLib.math", 6, "(a, b, c) is (%f %f %f) (fa, fb, fc) is (%f %f %f)\n", a, b, c, fa, fb, fc); + + while (iter > 0) { + psTrace("psLib.math", 6, "psDetermineBracket(): iteration %d\n", iter); + if ((fb < fa) && (fb < fc)) { + bracket->data.F32[0] = a; + bracket->data.F32[1] = b; + bracket->data.F32[2] = c; + psFree(tmp); + psTrace("psLib.math", 6, "---- p_psDetermineBracket() end ----\n"); + return(bracket); + } + stepSize*= (1.0 + stepSize); + a =- stepSize; + c =+ stepSize; + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, a); + fa = func(tmp, coords); + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, c); + fc = func(tmp, coords); + + psTrace("psLib.math", 6, "Iter(%d): (a, b, c) is (%f %f %f) (fa, fb, fc) is (%f %f %f)\n", iter, a, b, c, fa, fb, fc); + + if (fa < fb) { + new_aDir = -1; + } else { + new_aDir = 1; + } + + if (fc < fb) { + new_cDir = -1; + } else { + new_cDir = 1; + } + if ((new_aDir == 1) && (aDir == -1)) { + bracket->data.F32[0] = a; + bracket->data.F32[1] = b; + bracket->data.F32[2] = c; + psFree(tmp); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end ----\n"); + return(bracket); + } + + if ((new_cDir == 1) && (cDir == -1)) { + bracket->data.F32[0] = a; + bracket->data.F32[1] = b; + bracket->data.F32[2] = c; + psFree(tmp); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end ----\n"); + return(bracket); + } + aDir = new_aDir; + cDir = new_cDir; + iter--; + } + psFree(tmp); + psFree(bracket); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end (NULL) ----\n"); + return(NULL); +} + + +#define RETURN_FINAL_BRACKET(d) \ +if (a < c) { \ + bracket->data.F32[0] = a; \ + bracket->data.F32[1] = b; \ + bracket->data.F32[2] = c; \ +} else { \ + bracket->data.F32[0] = c; \ + bracket->data.F32[1] = b; \ + bracket->data.F32[2] = a; \ +} \ +psTrace("psLib.math", 4, "Final bracket (a, b, c) is (%f %f %f) (fa, fb, fc) is (%f %f %f)\n", a, b, c, fa, fb, fc); \ +psTrace("psLib.math", 4, "---- p_psDetermineBracket() end ----\n"); \ +psFree(tmp); \ +return(bracket); \ + +#define PS_DETERMINE_BRACKET_MAX_ITERATIONS 100 +psVector *p_psDetermineBracket2( + psVector *params, + psVector *line, + const psVector *paramMask, + const psArray *coords, + psMinimizePowellFunc func) +{ + psF32 a = 0.0; + psF32 b = 0.0; + psF32 c = 0.0; + psF32 fa = 0.0; + psF32 fb = 0.0; + psF32 fc = 0.0; + psS32 iter = 0; + psVector *tmp = psVectorAlloc(params->n, PS_TYPE_F32); + bool boolLineIsNull = true; + psF32 prevMin = 0.0; + psS32 countMin = 0; + + psTrace("psLib.math", 4, "---- p_psDetermineBracket() begin ----\n"); + + // If the line vector is zero, then return NULL. + PS_VECTOR_WITH_MASK_F32_CHECK_ZERO_VECTOR(params, paramMask, boolLineIsNull); + if (boolLineIsNull == true) { + psTrace("psLib.math", 2, "p_psDetermineBracket() called with zero line vector.\n"); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end (NULL) ----\n"); + psFree(tmp); + return(NULL); + } + + // We determine in what x-direction does the function decrease. + a = 0.0; + fa = func(params, coords); + b = 0.5; + iter = 0; + do { + b*= (1.0 + PS_DETERMINE_BRACKET_STEP_SIZE); + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, b); + fb = func(tmp, coords); + } while ((fabs(fb - fa) < FLT_EPSILON) && (iter++ < 100)); + + if (fb > fa) { + a = b; + fa = fb; + b = 0.0; + fb = func(params, coords); + } + c = b; + + // At this point we have (a, b) and we know that (fa >= fb). Initially, c=b; + // We keep stretching b out further from "a" until (fc > previous fc). If + // that happens, then we have our bracket. + psVector *bracket = psVectorAlloc(3, PS_TYPE_F32); + iter = 0; + while (iter < PS_DETERMINE_BRACKET_MAX_ITERATIONS) { + psTrace("psLib.math", 6, "psDetermineBracket(): iterationA %d\n", iter); + c+= (1.0 + PS_DETERMINE_BRACKET_STEP_SIZE) * (c - a); + + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmp, c); + fc = func(tmp, coords); + + psTrace("psLib.math", 6, "Iteration(%d) (bracket): (a, b, c) is (%f %f %f) (fa, fb, fc) is (%f %f %f)\n", iter, a, b, c, fa, fb, fc); + + if ((fb < fa) && (fb < fc)) { + RETURN_FINAL_BRACKET(); + } else { + b = c; + fb = fc; + } + + // This code maintains a count of how many times the minimum fc has + // stayed the same. If it gets too high, we exit this loop. + if (fc == prevMin) { + countMin++; + } else { + countMin = 0; + } + prevMin = fc; + if (countMin == 10) { + RETURN_FINAL_BRACKET(); + } + + iter++; + } + + psFree(bracket); + psTrace("psLib.math", 4, "---- p_psDetermineBracket() end (NULL) (BAD) ----\n"); + return(NULL); +} + +/****************************************************************************** +This routine takes as input a possibly multi-dimensional function, along +with an initial guess at the parameters of that function and vector "line" +of the same size as the parameter vector. It will minimize the function +along that vector and returns the offset along that vector at which the +minimum is determined. + +XXX: This routine is not very efficient in terms of total evaluations of the +function. +XXX: Since this is an internal function, many of the parameter checks are + redundant. + *****************************************************************************/ +#define PS_LINEMIN_MAX_ITERATIONS 30 +static psF32 LineMin( + psMinimization *min, + psVector *params, + psVector *line, + const psVector *paramMask, + const psArray *coords, + psMinimizePowellFunc func) +{ + PS_ASSERT_PTR_NON_NULL(min, NAN); + PS_ASSERT_VECTOR_NON_NULL(params, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(params, NAN); + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, NAN); + PS_ASSERT_VECTOR_NON_NULL(line, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(line, NAN); + PS_ASSERT_VECTOR_TYPE(line, PS_TYPE_F32, NAN); + PS_ASSERT_VECTOR_NON_NULL(paramMask, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(paramMask, NAN); + PS_ASSERT_VECTOR_TYPE(paramMask, PS_TYPE_U8, NAN); + PS_ASSERT_PTR_NON_NULL(coords, NAN); + PS_ASSERT_PTR_NON_NULL(func, NAN); + psVector *bracket; + psF32 a = 0.0; + psF32 b = 0.0; + psF32 c = 0.0; + psF32 n = 0.0; + psF32 fa = 0.0; + psF32 fb = 0.0; + psF32 fc = 0.0; + psF32 fn = 0.0; + psF32 mul = 0.0; + psS32 i = 0; + psS32 boolLineIsNull = true; + psS32 numIterations = 0; + + psTrace("psLib.math", 4, "---- LineMin() begin ----\n"); + PS_VECTOR_F32_CHECK_ZERO_VECTOR(line, boolLineIsNull); + + if (boolLineIsNull == true) { + min->value = func(params, coords); + psTrace("psLib.math", 2, "LineMin() called with zero line vector. Return 0.0. Function value is %f\n", min->value); + return(0.0); + } + + if (6 <= psTraceGetLevel("psLib.math")) { + for (i=0;in;i++) { + psTrace("psLib.math", 6, "(params, paramMask, line)[%d] is (%f %d %f)\n", i, + params->data.F32[i], paramMask->data.U8[i], line->data.F32[i]); + } + } + + bracket = p_psDetermineBracket2(params, line, paramMask, coords, func); + if (bracket == NULL) { + psError(PS_ERR_UNKNOWN, false, + "Could not bracket minimum. Returning NAN.\n"); + return(NAN); + } + numIterations = 0; + + psVector *tmpa = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *tmpb = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *tmpc = psVectorAlloc(params->n, PS_TYPE_F32); + psVector *tmpn = psVectorAlloc(params->n, PS_TYPE_F32); + + while (numIterations < PS_LINEMIN_MAX_ITERATIONS) { + numIterations++; + psTrace("psLib.math", 6, "LineMin(): iteration %d\n", numIterations); + + a = bracket->data.F32[0]; + b = bracket->data.F32[1]; + c = bracket->data.F32[2]; + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmpa, a); + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmpb, b); + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, tmpc, c); + fa = func(tmpa, coords); + fb = func(tmpb, coords); + fc = func(tmpc, coords); + psTrace("psLib.math", 6, "LineMin: f(%f %f %f) is (%f %f %f)\n", a, b, c, fa, fb, fc); + + // We determine which is the biggest segment in [a,b,c] then split + // that with the point n. + if ((b-a) > (c-b)) { + // This is the golden section formula + n = a + (0.69 * (b-a)); + for (i=0;in;i++) { + tmpn->data.F32[i] = params->data.F32[i] + (n * line->data.F32[i]); + } + fn = func(tmpn, coords); + + if (fn > fb) { + // a = n, b = b, c = c + bracket->data.F32[0] = n; + } else { + // a = a, b = n, c = b + bracket->data.F32[1] = n; + bracket->data.F32[2] = b; + } + } else { + n = b + (0.69 * (c-b)); + for (i=0;in;i++) { + tmpn->data.F32[i] = params->data.F32[i] + (n * line->data.F32[i]); + } + fn = func(tmpn, coords); + + if (fn > fb) { + // a = a, b = b, c = n + bracket->data.F32[2] = n; + } else { + // a = b, b = n, c = c + bracket->data.F32[0] = b; + bracket->data.F32[1] = n; + } + } + psTrace("psLib.math", 6, "LineMin: new bracket is (%f %f %f)\n", bracket->data.F32[0], bracket->data.F32[1], bracket->data.F32[2]); + + mul = bracket->data.F32[1]; + if ((fabs(a-b) < min->tol) && (fabs(b-c) < min->tol)) { + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, params, mul); + min->value = func(params, coords); + psFree(bracket); + psTrace("psLib.math", 4, "---- LineMin() end.a (%f) (%f) ----\n", mul, min->value); + psFree(tmpa); + psFree(tmpb); + psFree(tmpc); + psFree(tmpn); + return(mul); + } + } + + mul = bracket->data.F32[1]; + PS_VECTOR_ADD_MULTIPLE(params, paramMask, line, params, mul); + min->value = func(params, coords); + psTrace("psLib.math", 4, "---- LineMin() end.b (%f) %f ----\n", mul, min->value); + + psFree(bracket); + psFree(tmpa); + psFree(tmpb); + psFree(tmpc); + psFree(tmpn); + return(mul); +} + + +/****************************************************************************** +This routine must minimize a possibly multi-dimensional function. The +function to be minimized "func" is: + psF32 func(psVector *params, psArray *coords) +The "params" are the parameters of the function which are varied. The data +points at which the function is varied are in the argument "coords" which is +a psArray of psVectors: each vector represents a different coordinate. + +XXX: We do not use Brent's method. + *****************************************************************************/ +#define PS_MINIMIZE_POWELL_LINEMIN_MAX_ITERATIONS 20 +#define PS_MINIMIZE_POWELL_LINEMIN_ERROR_TOLERANCE 0.01 + +bool psMinimizePowell( + psMinimization *min, + psVector *params, + const psVector *paramMask, + const psArray *coords, + psMinimizePowellFunc func) +{ + PS_ASSERT_PTR_NON_NULL(min, NULL); + PS_ASSERT_VECTOR_NON_NULL(params, NULL); + PS_ASSERT_VECTOR_NON_EMPTY(params, NULL); + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, NULL); + PS_ASSERT_PTR_NON_NULL(coords, NULL); + PS_ASSERT_PTR_NON_NULL(func, NULL); + psS32 numDims = params->n; + psS32 i = 0; + psS32 j = 0; + psVector *myParamMask = NULL; + psMinimization dummyMin; + psF32 mul = 0.0; + psF32 baseFuncVal = 0.0; + psF32 currFuncVal = 0.0; + psS32 biggestIter = 0; + psF32 biggestDiff = 0.0; + psS32 iterationNumber = 0; + + psTrace("psLib.math", 4, "---- psMinimizePowell() begin ----\n"); + psTrace("psLib.math", 6, "min->maxIter is %d\n", min->maxIter); + psTrace("psLib.math", 6, "min->tol is %f\n", min->tol); + + if (paramMask == NULL) { + myParamMask = psVectorAlloc(params->n, PS_TYPE_U8); + psVectorInit(myParamMask, 0); + } else { + myParamMask = (psVector *) paramMask; + } + PS_ASSERT_VECTORS_SIZE_EQUAL(params, myParamMask, NULL); + + + psVector *pQP = psVectorAlloc(numDims, PS_TYPE_F32); + psVector *u = psVectorAlloc(numDims, PS_TYPE_F32); + psVector *Q = psVectorAlloc(numDims, PS_TYPE_F32); + + // 1: Set v[i] to be the unit vectors for each dimension in params + psArray *v = psArrayAlloc(numDims); + for (i=0;idata[i]) = (psVector *) psVectorAlloc(numDims, PS_TYPE_F32); + for (j=0;jdata[i]))->data.F32[j] = 1.0; + } else { + ((psVector *) (v->data[i]))->data.F32[j] = 0.0; + } + } + } + + // 2: Set Q to be the initial params (P in the ADD) + for (i=0;idata.F32[i] = params->data.F32[i]; + Q->n++; + } + + while (iterationNumber < min->maxIter) { + iterationNumber++; + psTrace("psLib.math", 6, "psMinimizePowell() iteration %d\n", iterationNumber); + + // 3: For each dimension in params, move Q only in the vector v[i] to + // minimize the function. + + baseFuncVal = func(Q, coords); + currFuncVal = baseFuncVal; + psTrace("psLib.math", 6, "Current function value is %f\n", currFuncVal); + + biggestDiff = 0; + biggestIter = 0; + for (i=0;idata.U8[i] == 0) { + P_PSMINIMIZATION_SET_MAXITER((&dummyMin),PS_MINIMIZE_POWELL_LINEMIN_MAX_ITERATIONS); + *(float*)&dummyMin.tol = PS_MINIMIZE_POWELL_LINEMIN_ERROR_TOLERANCE; + mul = LineMin(&dummyMin, Q, ((psVector *) v->data[i]), + myParamMask, coords, func); + if (isnan(mul)) { + psError(PS_ERR_UNKNOWN, false, + "Could not perform line minimization. Returning FALSE.\n"); + psFree(v); + psFree(pQP); + psFree(u); + psFree(Q); + psFree(myParamMask); + return(false); + } + psTrace("psLib.math", 6, "LineMin along dimension %d has multiple %f\n", i, mul); + + if (fabs(dummyMin.value - currFuncVal) > biggestDiff) { + biggestDiff = fabs(dummyMin.value - currFuncVal); + biggestIter = i; + } + currFuncVal = dummyMin.value; + } + // XXX: how can it be that we are not saving mul anywhere? + } + psTrace("psLib.math", 6, "New function value is %f\n", currFuncVal); + // XXX: There must be a bug here. How can currFuncVal be the current function value? + // It is simply the minimum along one of the parameter dimensions. + + // 4: Set the vector u = Q - P + for (i=0;idata.U8[i] == 0) { + u->data.F32[i] = Q->data.F32[i] - params->data.F32[i]; + u->n++; + + psTrace("psLib.math", 6, "u[i]=Q[i]-P[i] (%f = %f - %f)\n", u->data.F32[i], + Q->data.F32[i], + params->data.F32[i]); + + } else { + u->data.F32[i] = 0.0; + u->n++; + } + } + + // 5: Move Q only in the direction u, and minimize the function. + for (i=0;idata.F32[i]); + } + + mul = LineMin(&dummyMin, params, u, myParamMask, coords, func); + if (isnan(mul)) { + psError(PS_ERR_UNKNOWN, false, + "Could not perform line minimization. Returning FALSE.\n"); + psFree(v); + psFree(pQP); + psFree(u); + psFree(Q); + psFree(myParamMask); + return(false); + } + + // 6: + if (dummyMin.value > currFuncVal) { + psFree(v); + psFree(pQP); + psFree(u); + psFree(Q); + min->iter = iterationNumber; + min->value = currFuncVal; + min->lastDelta = 0.0; + psTrace("psLib.math", 4, "---- psMinimizePowell() end (1)(true) ----\n"); + psFree(myParamMask); + return(true); + } + + for (i=0;idata.U8[i] == 0) { + pQP->data.F32[i] = (2 * Q->data.F32[i]) - params->data.F32[i]; + } else { + pQP->data.F32[i] = params->data.F32[i]; + } + } + psF32 fqp = func(pQP, coords); + psF32 term1 = (baseFuncVal - currFuncVal) - biggestDiff; + term1*= term1; + term1*= 2.0 * (baseFuncVal - (2.0 * currFuncVal) + fqp); + psF32 term2 = baseFuncVal - fqp; + term2*= term2 * biggestDiff; + if (term1 < term2) { + for (i=0;idata.U8[i] == 0) { + ((psVector *) v->data[biggestIter])->data.F32[i] = u->data.F32[i]; + } + } + } + + // 7: Set P to Q + for (i=0;idata.U8[i] == 0) { + params->data.F32[i] = Q->data.F32[i]; + } + } + + // 8: Go to step 3 until the change is less than some tolerance. + if (fabs(baseFuncVal - currFuncVal) <= min->tol) { + psFree(v); + psFree(pQP); + psFree(u); + psFree(Q); + // XXX: Ensure that currFuncVal is the correct value to use here. + min->value = currFuncVal; + min->iter = iterationNumber; + min->lastDelta = currFuncVal - baseFuncVal; + psTrace("psLib.math", 4, "---- psMinimizePowell() end (2) (true) ----\n"); + psFree(myParamMask); + return(true); + } + } + + psFree(v); + psFree(pQP); + psFree(u); + psFree(Q); + min->iter = iterationNumber; + psTrace("psLib.math", 4, "---- psMinimizePowell() end (0) (false) ----\n"); + + psFree(myParamMask); + return(false); +} + + +/****************************************************************************** +This routine is to be used with the psMinimizeChi2Powell() function below. +and the psMinimizePowell() function above. + +The basic idea is calculate chi-squared for a set of params/coords/errors. +This functions uses global variables to receive the function pointer, the +data values, and the data errors. + *****************************************************************************/ +static psF32 myPowellChi2Func( + const psVector *params, + const psArray *coords) +{ + psTrace("psLib.math", 4, "---- myPowellChi2Func() begin ----\n"); + PS_ASSERT_VECTOR_NON_NULL(params, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(params, NAN); + PS_ASSERT_PTR_NON_NULL(coords, NAN); + + psF32 chi2 = 0.0; + psF32 d; + psS32 i; + psVector *tmp; + + psVector *values = coords->data[coords->n]; + psVector *errors = coords->data[coords->n + 1]; + psMinimizeChi2PowellFunc *func = coords->data[coords->n + 2]; + + PS_ASSERT_VECTOR_NON_NULL(values, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(values, NAN); + PS_ASSERT_VECTOR_TYPE(values, PS_TYPE_F32, NAN); + if (errors) { + PS_ASSERT_VECTOR_NON_NULL(errors, NAN); + PS_ASSERT_VECTOR_NON_EMPTY(errors, NAN); + PS_ASSERT_VECTOR_TYPE(errors, PS_TYPE_F32, NAN); + PS_ASSERT_VECTORS_SIZE_EQUAL(values, errors, NAN); + } + + tmp = (*func)(params, coords); + + if (errors == NULL) { + for (i=0;in;i++) { + d = (tmp->data.F32[i] - values->data.F32[i]); + chi2+= d * d; + } + } else { + for (i=0;in;i++) { + d = (tmp->data.F32[i] - values->data.F32[i]) / errors->data.F32[i]; + chi2+= d * d; + } + } + psFree(tmp); + psTrace("psLib.math", 4, "---- myPowellChi2Func() end (chi2 is %f) ----\n", chi2); + return(chi2); +} + + +/****************************************************************************** +This routine must minimize the chi-squared match of a set of data points and +values for a possibly multi-dimensional function. + +The basic idea is to use the psMinimizePowell() function defined above. In +order to do so, we defined above a function myPowellChi2Func() which takes +the "func" function and returns chi-squared over the params/coords/values. +We then use that function myPowellChi2Func() in the call to +psMinimizePowell(). + *****************************************************************************/ +bool psMinimizeChi2Powell( + psMinimization *min, + psVector *params, + psMinConstraint *constraint, + const psArray *coords, + const psVector *value, + const psVector *error, + psMinimizeChi2PowellFunc model) +{ + // Generate extended version of coords array, so we can pass in extra data to the chi^2 function + psArray *newCoords = psArrayAlloc(coords->n + 3); + for (long i = 0; i < coords->n; i++) { + newCoords->data[i] = psMemIncrRefCounter(coords->data[i]); + } + newCoords->n = coords->n; // We deceive everyone else as to the length + // Casting away const: I'm not going to hurt you, just want to increment your reference counter is all + newCoords->data[coords->n] = psMemIncrRefCounter((psVector*)value); + newCoords->data[coords->n + 1] = psMemIncrRefCounter((psVector*)error); + newCoords->data[coords->n + 2] = &model; + + bool success = psMinimizePowell(min, params, constraint->paramMask, newCoords, myPowellChi2Func); + + newCoords->data[coords->n - 1] = NULL; // We can't free the array with a function pointer on it + psFree(newCoords); + return success; +} + Index: /branches/rel-1-1/psLib/src/math/psMinimizePowell.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psMinimizePowell.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psMinimizePowell.h (revision 12167) @@ -0,0 +1,85 @@ +/* @file psMinimizePowell.c + * @brief basic minimization functions + * + * This file will contain function prototypes for various Powell + * chi-squared minimization routines. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifndef PS_MINIMIZE_POWELL_H +#define PS_MINIMIZE_POWELL_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psMinimizeLMM.h" +#include "psVector.h" +#include "psMemory.h" +#include "psArray.h" +#include "psImage.h" +#include "psMatrix.h" +#include "psPolynomial.h" +#include "psSpline.h" +#include "psStats.h" +#include "psTrace.h" +#include "psError.h" +#include "psConstants.h" + +/** Specifies the format of a user-defined function that the general Powell + * minimizer routine will accept. + * + * @return float: the single float value of the function given the parameters + * and coordinate vectors. +*/ +typedef +float (*psMinimizePowellFunc)( + const psVector *params, ///< Parameters used to evaluate the function + const psArray *coords ///< Coordinates at which to evaluate +); + +/** Minimizes a specified function based on the Powell method. + * + * @return bool: True if successful. + */ +bool psMinimizePowell( + psMinimization *min, ///< Minimization specification + psVector *params, ///< "Best guess" for parameters that minimize func + const psVector *paramMask, ///< Parameters to be held fixed by minimizer + const psArray *coords, ///< Measurement coordinates + psMinimizePowellFunc func ///< Specified function +); + +/** Specifies the format of a user-defined function that the general Powell chi- + * squared minimizer routine will accept. + * + * @return psVector*: Calculated values given the parameters and coordinates. +*/ +typedef +psVector *(*psMinimizeChi2PowellFunc)( + const psVector *params, ///< Parameters used to evaluate the function + const psArray *coords ///< Coordinates at which to evaluate +); + +/** Minimizes a specified function based on the Powell chi-squared method. + * + * @return bool: True is successful. + */ +bool psMinimizeChi2Powell( + psMinimization *min, ///< Minimization specification + psVector *params, ///< "Best guess" for parameters that minimize func + psMinConstraint *constraint, + const psArray *coords, ///< Measurement coordinates + const psVector *value, ///< Measured values at the coordinates + const psVector *error, ///< Errors in the measure values (or NULL) + psMinimizeChi2PowellFunc model ///< Specified function +); + +/// @} +#endif // #ifndef PS_MINIMIZE_POWELL_H Index: /branches/rel-1-1/psLib/src/math/psPolynomial.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomial.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomial.c (revision 12167) @@ -0,0 +1,1223 @@ +/** @file psPolynomial.c +* +* @brief Contains basic function allocation, deallocation, and evaluation +* routines. +* +* This file will hold the routiness for allocating, freeing, and evaluating +* polynomials. It also contains a Gaussian functions. +* +* @version $Revision: 1.157 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-09 22:38:53 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +* XXX: Should the "coeffErr[]" be used as well? Bug ???. Ignore coeffErr +* +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include +#include + +#include "psRandom.h" +#include "psMemory.h" +#include "psVector.h" +#include "psScalar.h" +#include "psTrace.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psPolynomial.h" +#include "psAssert.h" + + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ +static void polynomial1DFree(psPolynomial1D* poly); +static void polynomial2DFree(psPolynomial2D* poly); +static void polynomial3DFree(psPolynomial3D* poly); +static void polynomial4DFree(psPolynomial4D* poly); + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +bool psMemCheckPolynomial1D(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)polynomial1DFree ); +} + +bool psMemCheckPolynomial2D(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)polynomial2DFree ); +} + +bool psMemCheckPolynomial3D(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)polynomial3DFree ); +} + +bool psMemCheckPolynomial4D(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)polynomial4DFree ); +} + +static void polynomial1DFree(psPolynomial1D* poly) +{ + psFree(poly->coeff); + psFree(poly->coeffErr); + psFree(poly->mask); +} + +static void polynomial2DFree(psPolynomial2D* poly) +{ + unsigned int x = 0; + + for (x = 0; x < (1 + poly->nX); x++) { + psFree(poly->coeff[x]); + psFree(poly->coeffErr[x]); + psFree(poly->mask[x]); + } + psFree(poly->coeff); + psFree(poly->coeffErr); + psFree(poly->mask); +} + +static void polynomial3DFree(psPolynomial3D* poly) +{ + unsigned int x = 0; + unsigned int y = 0; + + for (x = 0; x < (1 + poly->nX); x++) { + for (y = 0; y < (1 + poly->nY); y++) { + psFree(poly->coeff[x][y]); + psFree(poly->coeffErr[x][y]); + psFree(poly->mask[x][y]); + } + psFree(poly->coeff[x]); + psFree(poly->coeffErr[x]); + psFree(poly->mask[x]); + } + + psFree(poly->coeff); + psFree(poly->coeffErr); + psFree(poly->mask); +} + +static void polynomial4DFree(psPolynomial4D* poly) +{ + unsigned int x = 0; + unsigned int y = 0; + unsigned int z = 0; + + for (x = 0; x < (1 + poly->nX); x++) { + for (y = 0; y < (1 + poly->nY); y++) { + for (z = 0; z < (1 + poly->nZ); z++) { + psFree(poly->coeff[x][y][z]); + psFree(poly->coeffErr[x][y][z]); + psFree(poly->mask[x][y][z]); + } + psFree(poly->coeff[x][y]); + psFree(poly->coeffErr[x][y]); + psFree(poly->mask[x][y]); + } + psFree(poly->coeff[x]); + psFree(poly->coeffErr[x]); + psFree(poly->mask[x]); + } + + psFree(poly->coeff); + psFree(poly->coeffErr); + psFree(poly->mask); +} + +/***************************************************************************** +p_psCreateChebyshevPolys(n): this routine takes as input the required order n, +and returns as output as a pointer to an array of n psPolynomial1D +structures, corresponding to the first n Chebyshev polynomials. + +XXX: The output should be static since the Chebyshev polynomials might be +used frequently and the data structure created here does not contain the +outer coefficients of the Chebyshev polynomials. + *****************************************************************************/ +psPolynomial1D **p_psCreateChebyshevPolys(psS32 numPolys) +{ + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(numPolys, 1, NULL); + + psPolynomial1D **chebPolys = (psPolynomial1D **) psAlloc(numPolys * sizeof(psPolynomial1D *)); + for (psS32 i = 0; i < numPolys; i++) { + chebPolys[i] = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, i); + } + + // Create the Chebyshev polynomials. + // Polynomial i has i-th order. + chebPolys[0]->coeff[0] = 1.0; + if (numPolys >= 2) { + chebPolys[1]->coeff[1] = 1.0; + + for (psS32 i = 2; i < numPolys; i++) { + for (psS32 j = 0; j < chebPolys[i - 1]->nX+1; j++) { + chebPolys[i]->coeff[j + 1] = 2.0 * chebPolys[i - 1]->coeff[j]; + } + for (psS32 j = 0; j < chebPolys[i - 2]->nX+1; j++) { + chebPolys[i]->coeff[j] -= chebPolys[i - 2]->coeff[j]; + } + } + } + + if (psTraceGetLevel("psLib.math") >= 6) { + for (psS32 j = 0; j < numPolys; j++) { + PS_POLY_PRINT_1D(chebPolys[j]); + } + } + return (chebPolys); +} + + +/***************************************************************************** + Polynomial coefficients will be accessed in [w][x][y][z] fashion. + *****************************************************************************/ +static psF64 ordPolynomial1DEval( + psF64 x, + const psPolynomial1D* poly) +{ + unsigned int loop_x = 0; + psF64 polySum = 0.0; + psF64 xSum = 1.0; + + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + psTrace("psLib.math", 4, "Polynomial order is %u\n", poly->nX); + for (loop_x = 0; loop_x < poly->nX+1; loop_x++) { + psTrace("psLib.math", 4, "Polynomial coeff[%u] is %lf\n", loop_x, poly->coeff[loop_x]); + } + + for (loop_x = 0; loop_x < poly->nX+1; loop_x++) { + if (poly->mask[loop_x] == 0) { + psTrace("psLib.math", 8, + "polysum+= sum*coeff [%lf+= (%lf * %lf)\n", polySum, xSum, poly->coeff[loop_x]); + polySum += xSum * poly->coeff[loop_x]; + } + xSum *= x; + } + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return(polySum); +} + +// XXX: You can do this without having to psAlloc() vector d. +// XXX: How does the mask vector effect Crenshaw's formula? +// NOTE: We assume that x is scaled between -1.0 and 1.0; +// XXX: Create a faster version for low-order Chebyshevs. +static psF64 chebPolynomial1DEval( + psF64 x, + const psPolynomial1D* poly) +{ + PS_ASSERT_DOUBLE_WITHIN_RANGE(x, -1.0, 1.0, NAN); + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(poly->nX, 0, NAN); + psVector *d; + + unsigned int nTerms = 1 + poly->nX; + unsigned int i; + psF64 tmp = 0.0; + + // Special case where the Chebyshev poly is constant. + if (nTerms == 1) { + if (poly->mask[0] == 0) { + tmp += poly->coeff[0]; + } + return(tmp); + } + + // Special case where the Chebyshev poly is linear. + if (nTerms == 2) { + if (poly->mask[0] == 0) { + tmp+= poly->coeff[0]; + } + if (poly->mask[1] == 0) { + tmp+= poly->coeff[1] * x; + } + return(tmp); + } + + if (1) { + // General case where the Chebyshev poly has 2 or more terms. + d = psVectorAlloc(nTerms, PS_TYPE_F64); + if(poly->mask[nTerms-1] == 0) { + d->data.F64[nTerms-1] = poly->coeff[nTerms-1]; + } else { + d->data.F64[nTerms-1] = 0.0; + } + + d->data.F64[nTerms-2] = (2.0 * x * d->data.F64[nTerms-1]); + if(poly->mask[nTerms-2] == 0) { + d->data.F64[nTerms-2] += poly->coeff[nTerms-2]; + } + + for (i=nTerms-3;i>=1;i--) { + d->data.F64[i] = (2.0 * x * d->data.F64[i+1]) - (d->data.F64[i+2]); + if(poly->mask[i] == 0) { + d->data.F64[i] += poly->coeff[i]; + } + } + + tmp = (x * d->data.F64[1]) - (d->data.F64[2]); + if(poly->mask[0] == 0) { + tmp += (0.5 * poly->coeff[0]); + } + psFree(d); + } else { + // XXX: This is old code that does not use Clenshaw's formula. Get rid of it. + psPolynomial1D **chebPolys = p_psCreateChebyshevPolys(1 + poly->nX); + + tmp = 0.0; + for (psS32 i=0;i<(1 + poly->nX);i++) { + tmp+= (poly->coeff[i] * psPolynomial1DEval(chebPolys[i], x)); + } + tmp-= (poly->coeff[0]/2.0); + + for (psS32 i=0;i<(1 + poly->nX);i++) { + psFree(chebPolys[i]); + } + psFree(chebPolys); + } + + return(tmp); +} + +static psF64 ordPolynomial2DEval(psF64 x, + psF64 y, + const psPolynomial2D* poly) +{ + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + unsigned int loop_x = 0; + unsigned int loop_y = 0; + psF64 polySum = 0.0; + psF64 xSum = 1.0; + psF64 ySum = 1.0; + + for (loop_x = 0; loop_x < (1 + poly->nX); loop_x++) { + ySum = xSum; + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + if (poly->mask[loop_x][loop_y] == 0) { + polySum += ySum * poly->coeff[loop_x][loop_y]; + } + ySum *= y; + } + xSum *= x; + } + + return(polySum); +} + +static psF64 chebPolynomial2DEval(psF64 x, + psF64 y, + const psPolynomial2D* poly) +{ + PS_ASSERT_DOUBLE_WITHIN_RANGE(x, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(y, -1.0, 1.0, 0.0); + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + unsigned int loop_x = 0; + unsigned int loop_y = 0; + unsigned int i = 0; + psF64 polySum = 0.0; + psPolynomial1D* *chebPolys = NULL; + unsigned int maxChebyPoly = 0; + + // Determine how many Chebyshev polynomials + // are needed, then create them. + maxChebyPoly = poly->nX; + if (poly->nY > maxChebyPoly) { + maxChebyPoly = poly->nY; + } + chebPolys = p_psCreateChebyshevPolys(maxChebyPoly + 1); + + for (loop_x = 0; loop_x < (1 + poly->nX); loop_x++) { + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + if (poly->mask[loop_x][loop_y] == 0) { + polySum += poly->coeff[loop_x][loop_y] * + psPolynomial1DEval(chebPolys[loop_x], x) * + psPolynomial1DEval(chebPolys[loop_y], y); + } + } + } + for (i=0;inX); loop_x++) { + ySum = xSum; + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + zSum = ySum; + for (loop_z = 0; loop_z < (1 + poly->nZ); loop_z++) { + if (poly->mask[loop_x][loop_y][loop_z] == 0) { + polySum += zSum * poly->coeff[loop_x][loop_y][loop_z]; + } + zSum *= z; + } + ySum *= y; + } + xSum *= x; + } + + return(polySum); +} + +static psF64 chebPolynomial3DEval(psF64 x, + psF64 y, + psF64 z, + const psPolynomial3D* poly) +{ + PS_ASSERT_DOUBLE_WITHIN_RANGE(x, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(y, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(z, -1.0, 1.0, 0.0); + unsigned int loop_x = 0; + unsigned int loop_y = 0; + unsigned int loop_z = 0; + unsigned int i = 0; + psF64 polySum = 0.0; + psPolynomial1D* *chebPolys = NULL; + unsigned int maxChebyPoly = 0; + + // Determine how many Chebyshev polynomials + // are needed, then create them. + maxChebyPoly = poly->nX; + if (poly->nY > maxChebyPoly) { + maxChebyPoly = poly->nY; + } + if (poly->nZ > maxChebyPoly) { + maxChebyPoly = poly->nZ; + } + chebPolys = p_psCreateChebyshevPolys(maxChebyPoly + 1); + + for (loop_x = 0; loop_x < (1 + poly->nX); loop_x++) { + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + for (loop_z = 0; loop_z < (1 + poly->nZ); loop_z++) { + if (poly->mask[loop_x][loop_y][loop_z] == 0) { + polySum += poly->coeff[loop_x][loop_y][loop_z] * + psPolynomial1DEval(chebPolys[loop_x], x) * + psPolynomial1DEval(chebPolys[loop_y], y) * + psPolynomial1DEval(chebPolys[loop_z], z); + } + } + } + } + + for (i=0;inX); loop_x++) { + ySum = xSum; + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + zSum = ySum; + for (loop_z = 0; loop_z < (1 + poly->nZ); loop_z++) { + tSum = zSum; + for (loop_t = 0; loop_t < (1 + poly->nT); loop_t++) { + if (poly->mask[loop_x][loop_y][loop_z][loop_t] == 0) { + polySum += tSum * poly->coeff[loop_x][loop_y][loop_z][loop_t]; + } + tSum *= t; + } + zSum *= z; + } + ySum *= y; + } + xSum *= x; + } + + return(polySum); +} + +static psF64 chebPolynomial4DEval(psF64 x, + psF64 y, + psF64 z, + psF64 t, + const psPolynomial4D* poly) +{ + PS_ASSERT_DOUBLE_WITHIN_RANGE(x, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(y, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(z, -1.0, 1.0, 0.0); + PS_ASSERT_DOUBLE_WITHIN_RANGE(t, -1.0, 1.0, 0.0); + unsigned int loop_x = 0; + unsigned int loop_y = 0; + unsigned int loop_z = 0; + unsigned int loop_t = 0; + unsigned int i = 0; + psF64 polySum = 0.0; + psPolynomial1D* *chebPolys = NULL; + unsigned int maxChebyPoly = 0; + + // Determine how many Chebyshev polynomials + // are needed, then create them. + maxChebyPoly = poly->nX; + if (poly->nY > maxChebyPoly) { + maxChebyPoly = poly->nY; + } + if (poly->nZ > maxChebyPoly) { + maxChebyPoly = poly->nZ; + } + if (poly->nT > maxChebyPoly) { + maxChebyPoly = poly->nT; + } + // Add 1 since p_psCreateChebyshevPolys() takes nTerms, not nOrder. + chebPolys = p_psCreateChebyshevPolys(maxChebyPoly + 1); + + for (loop_x = 0; loop_x < (1 + poly->nX); loop_x++) { + for (loop_y = 0; loop_y < (1 + poly->nY); loop_y++) { + for (loop_z = 0; loop_z < (1 + poly->nZ); loop_z++) { + for (loop_t = 0; loop_t < (1 + poly->nT); loop_t++) { + if (poly->mask[loop_x][loop_y][loop_z][loop_t] == 0) { + polySum += poly->coeff[loop_x][loop_y][loop_z][loop_t] * + psPolynomial1DEval(chebPolys[loop_x], x) * + psPolynomial1DEval(chebPolys[loop_y], y) * + psPolynomial1DEval(chebPolys[loop_z], z) * + psPolynomial1DEval(chebPolys[loop_t], t); + } + } + } + } + } + + for (i=0;itype = type; + newPoly->nX = nOrder; + newPoly->coeff = psAlloc((nOrder + 1) * sizeof(psF64)); + newPoly->coeffErr = psAlloc((nOrder + 1) * sizeof(psF64)); + newPoly->mask = (psMaskType *)psAlloc((nOrder + 1) * sizeof(psMaskType)); + for (psU32 i = 0; i < (nOrder + 1); i++) { + newPoly->coeff[i] = 0.0; + newPoly->coeffErr[i] = 0.0; + newPoly->mask[i] = 0; + } + + return(newPoly); +} + +psPolynomial2D* psPolynomial2DAlloc( + psPolynomialType type, + unsigned int nX, + unsigned int nY) +{ + PS_ASSERT_POLY_VALID_TYPE(type, NULL); + + unsigned int x = 0; + unsigned int y = 0; + psPolynomial2D* newPoly = NULL; + + newPoly = (psPolynomial2D* ) psAlloc(sizeof(psPolynomial2D)); + psMemSetDeallocator(newPoly, (psFreeFunc) polynomial2DFree); + + newPoly->type = type; + newPoly->nX = nX; + newPoly->nY = nY; + + newPoly->coeff = psAlloc((1 + nX) * sizeof(psF64 *)); + newPoly->coeffErr = psAlloc((1 + nX) * sizeof(psF64 *)); + newPoly->mask = (psMaskType **)psAlloc((1 + nX) * sizeof(psMaskType *)); + for (x = 0; x < (1 + nX); x++) { + newPoly->coeff[x] = psAlloc((1 + nY) * sizeof(psF64)); + newPoly->coeffErr[x] = psAlloc((1 + nY) * sizeof(psF64)); + newPoly->mask[x] = (psMaskType *)psAlloc((1 + nY) * sizeof(psMaskType)); + } + for (x = 0; x < (1 + nX); x++) { + for (y = 0; y < (1 + nY); y++) { + newPoly->coeff[x][y] = 0.0; + newPoly->coeffErr[x][y] = 0.0; + newPoly->mask[x][y] = 0; + } + } + + return(newPoly); +} + +// XXX add 1D, 3D, 4D versions +bool psPolynomial2DRecycle(psPolynomial2D *poly, + psPolynomialType type, + unsigned int nX, + unsigned int nY) +{ + PS_ASSERT_INT_NONNEGATIVE(nX, NULL); + PS_ASSERT_INT_NONNEGATIVE(nY, NULL); + + bool match = true; + match &= (poly->type == type); + match &= (poly->nX == type); + match &= (poly->nY == type); + + if (!match) { + for (int i = 0; i < poly->nX + 1; i++) { + psFree (poly->coeff[i]); + psFree (poly->coeffErr[i]); + psFree (poly->mask[i]); + } + psFree (poly->coeff); + psFree (poly->coeffErr); + psFree (poly->mask); + + poly->type = type; + poly->nX = nX; + poly->nY = nY; + + poly->coeff = psAlloc((1 + nX) * sizeof(psF64 *)); + poly->coeffErr = psAlloc((1 + nX) * sizeof(psF64 *)); + poly->mask = (psMaskType **)psAlloc((1 + nX) * sizeof(psMaskType *)); + for (int i = 0; i < (1 + nX); i++) { + poly->coeff[i] = psAlloc((1 + nY) * sizeof(psF64)); + poly->coeffErr[i] = psAlloc((1 + nY) * sizeof(psF64)); + poly->mask[i] = (psMaskType *)psAlloc((1 + nY) * sizeof(psMaskType)); + } + } + for (int i = 0; i < (1 + nX); i++) { + for (int j = 0; j < (1 + nY); j++) { + poly->coeff[i][j] = 0.0; + poly->coeffErr[i][j] = 0.0; + poly->mask[i][j] = 0; + } + } + return(true); +} + +// XXX add 1D, 3D, 4D versions +psPolynomial2D *psPolynomial2DCopy(psPolynomial2D *out, + psPolynomial2D *poly) +{ + if (out == NULL) { + out = psPolynomial2DAlloc (poly->type, poly->nX, poly->nY); + } else { + psPolynomial2DRecycle (out, poly->type, poly->nX, poly->nY); + } + + for (int i = 0; i < (1 + poly->nX); i++) { + for (int j = 0; j < (1 + poly->nY); j++) { + out->coeff[i][j] = poly->coeff[i][j]; + out->coeffErr[i][j] = poly->coeffErr[i][j]; + out->mask[i][j] = poly->mask[i][j]; + } + } + return(out); +} + +psPolynomial3D* psPolynomial3DAlloc( + psPolynomialType type, + unsigned int nX, + unsigned int nY, + unsigned int nZ) +{ + PS_ASSERT_POLY_VALID_TYPE(type, NULL); + + //PS_ASSERT_INT_NONNEGATIVE(nX, NULL); + //PS_ASSERT_INT_NONNEGATIVE(nY, NULL); + //PS_ASSERT_INT_NONNEGATIVE(nZ, NULL); + + unsigned int x = 0; + unsigned int y = 0; + unsigned int z = 0; + psPolynomial3D* newPoly = NULL; + + newPoly = (psPolynomial3D* ) psAlloc(sizeof(psPolynomial3D)); + psMemSetDeallocator(newPoly, (psFreeFunc) polynomial3DFree); + + newPoly->type = type; + newPoly->nX = nX; + newPoly->nY = nY; + newPoly->nZ = nZ; + + newPoly->coeff = psAlloc((nX + 1) * sizeof(psF64 **)); + newPoly->coeffErr = psAlloc((nX + 1) * sizeof(psF64 **)); + newPoly->mask = (psMaskType ***)psAlloc((nX + 1) * sizeof(psMaskType **)); + for (x = 0; x < (1 + nX); x++) { + newPoly->coeff[x] = psAlloc((nY + 1) * sizeof(psF64 *)); + newPoly->coeffErr[x] = psAlloc((nY + 1) * sizeof(psF64 *)); + newPoly->mask[x] = (psMaskType **)psAlloc((nY + 1) * sizeof(psMaskType *)); + for (y = 0; y < (nY + 1); y++) { + newPoly->coeff[x][y] = psAlloc((nZ + 1) * sizeof(psF64)); + newPoly->coeffErr[x][y] = psAlloc((nZ + 1) * sizeof(psF64)); + newPoly->mask[x][y] = (psMaskType *)psAlloc((nZ + 1) * sizeof(psMaskType)); + } + } + for (x = 0; x < (nX + 1); x++) { + for (y = 0; y < (nY + 1); y++) { + for (z = 0; z < (nZ + 1); z++) { + newPoly->coeff[x][y][z] = 0.0; + newPoly->coeffErr[x][y][z] = 0.0; + newPoly->mask[x][y][z] = 0; + } + } + } + + return(newPoly); +} + +psPolynomial4D* psPolynomial4DAlloc( + psPolynomialType type, + unsigned int nX, + unsigned int nY, + unsigned int nZ, + unsigned int nT) +{ + PS_ASSERT_POLY_VALID_TYPE(type, NULL); + + //PS_ASSERT_INT_NONNEGATIVE(nX, NULL); + //PS_ASSERT_INT_NONNEGATIVE(nY, NULL); + //PS_ASSERT_INT_NONNEGATIVE(nZ, NULL); + //PS_ASSERT_INT_NONNEGATIVE(nT, NULL); + + unsigned int x = 0; + unsigned int y = 0; + unsigned int z = 0; + unsigned int t = 0; + psPolynomial4D* newPoly = NULL; + + newPoly = (psPolynomial4D* ) psAlloc(sizeof(psPolynomial4D)); + psMemSetDeallocator(newPoly, (psFreeFunc) polynomial4DFree); + + newPoly->type = type; + newPoly->nX = nX; + newPoly->nY = nY; + newPoly->nZ = nZ; + newPoly->nT = nT; + + newPoly->coeff = psAlloc((nX + 1) * sizeof(psF64 ***)); + newPoly->coeffErr = psAlloc((nX + 1) * sizeof(psF64 ***)); + newPoly->mask = (psMaskType ****)psAlloc((nX + 1) * sizeof(psMaskType ***)); + for (x = 0; x < (nX + 1); x++) { + newPoly->coeff[x] = psAlloc((nY + 1) * sizeof(psF64 **)); + newPoly->coeffErr[x] = psAlloc((nY + 1) * sizeof(psF64 **)); + newPoly->mask[x] = (psMaskType ***)psAlloc((nY + 1) * sizeof(psMaskType **)); + for (y = 0; y < (nY + 1); y++) { + newPoly->coeff[x][y] = psAlloc((nZ + 1) * sizeof(psF64 *)); + newPoly->coeffErr[x][y] = psAlloc((nZ + 1) * sizeof(psF64 *)); + newPoly->mask[x][y] = (psMaskType **)psAlloc((nZ + 1) * sizeof(psMaskType *)); + for (z = 0; z < (nZ + 1); z++) { + newPoly->coeff[x][y][z] = psAlloc((nT + 1) * sizeof(psF64)); + newPoly->coeffErr[x][y][z] = psAlloc((nT + 1) * sizeof(psF64)); + newPoly->mask[x][y][z] = (psMaskType *)psAlloc((nT + 1) * sizeof(psMaskType)); + } + } + } + for (x = 0; x < (nX + 1); x++) { + for (y = 0; y < (nY + 1); y++) { + for (z = 0; z < (nZ + 1); z++) { + for (t = 0; t < (nT + 1); t++) { + newPoly->coeff[x][y][z][t] = 0.0; + newPoly->coeffErr[x][y][z][t] = 0.0; + newPoly->mask[x][y][z][t] = 0; + } + } + } + } + + return(newPoly); +} + +psF64 psPolynomial1DEval(const psPolynomial1D* poly, + psF64 x) +{ + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + if (poly->type == PS_POLYNOMIAL_ORD) { + return(ordPolynomial1DEval(x, poly)); + } else if (poly->type == PS_POLYNOMIAL_CHEB) { + return(chebPolynomial1DEval(x, poly)); + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Unknown polynomial type 0x%x found. Evaluation failed."), + poly->type); + } + return(NAN); +} + +// this function must accept F32 and F64 input x vectors +psVector *psPolynomial1DEvalVector(const psPolynomial1D *poly, + const psVector *x) +{ + PS_ASSERT_POLY_NON_NULL(poly, NULL); + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + + psVector *tmp; + + switch (x->type.type) { + case PS_TYPE_F64: + tmp = psVectorAlloc(x->n, PS_TYPE_F64); + for (unsigned int i=0;in;i++) { + tmp->data.F64[i] = psPolynomial1DEval(poly, x->data.F64[i]); + } + break; + case PS_TYPE_F32: + tmp = psVectorAlloc(x->n, PS_TYPE_F32); + for (unsigned int i=0;in;i++) { + tmp->data.F32[i] = psPolynomial1DEval(poly, x->data.F32[i]); + } + break; + default: + psError(PS_ERR_UNKNOWN, false, "invalid input data type.\n"); + return (NULL); + } + return(tmp); +} + +psF64 psPolynomial2DEval(const psPolynomial2D* poly, + psF64 x, + psF64 y) +{ + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + if (poly->type == PS_POLYNOMIAL_ORD) { + return(ordPolynomial2DEval(x, y, poly)); + } else if (poly->type == PS_POLYNOMIAL_CHEB) { + return(chebPolynomial2DEval(x, y, poly)); + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Unknown polynomial type 0x%x found. Evaluation failed."), + poly->type); + } + return(NAN); +} + +// this function must support input data types of F32 and F64 +// all input vectors data types must match (all F32 or all F64) +psVector *psPolynomial2DEvalVector(const psPolynomial2D *poly, + const psVector *x, + const psVector *y) + +{ + PS_ASSERT_POLY_NON_NULL(poly, NULL); + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(y, NULL); + + psVector *tmp; + unsigned int vecLen=x->n; + + // Determine the length of the output vector to by the minimum of the x,y vectors + if (y->n < vecLen) { + vecLen = y->n; + } + + switch (x->type.type) { + case PS_TYPE_F32: + if (y->type.type != x->type.type) { + psError(PS_ERR_UNKNOWN, true, "type mismatch in data vectors"); + return (NULL); + } + + // Create output vector to return + tmp = psVectorAlloc(vecLen, PS_TYPE_F32); + + // Evaluate the polynomial at the specified points + for (unsigned int i=0; idata.F32[i] = psPolynomial2DEval(poly,x->data.F32[i],y->data.F32[i]); + } + break; + case PS_TYPE_F64: + if (y->type.type != x->type.type) { + psError(PS_ERR_UNKNOWN, true, "type mismatch in data vectors"); + return (NULL); + } + + // Create output vector to return + tmp = psVectorAlloc(vecLen, PS_TYPE_F64); + + // Evaluate the polynomial at the specified points + for (unsigned int i=0; idata.F64[i] = psPolynomial2DEval(poly,x->data.F64[i],y->data.F64[i]); + } + break; + default: + psError(PS_ERR_UNKNOWN, false, "invalid input data type.\n"); + return (NULL); + } + // Return output vector + return(tmp); +} + +psF64 psPolynomial3DEval(const psPolynomial3D* poly, + psF64 x, + psF64 y, + psF64 z) +{ + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + if (poly->type == PS_POLYNOMIAL_ORD) { + return(ordPolynomial3DEval(x, y, z, poly)); + } else if (poly->type == PS_POLYNOMIAL_CHEB) { + return(chebPolynomial3DEval(x, y, z, poly)); + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Unknown polynomial type 0x%x found. Evaluation failed."), + poly->type); + } + return(NAN); +} + +// XXX: The output of this routine is always psF64 while 1D and 2D are +// dependent on the input vectors. +psVector *psPolynomial3DEvalVector( + const psPolynomial3D *poly, + const psVector *x, + const psVector *y, + const psVector *z) +{ + PS_ASSERT_POLY_NON_NULL(poly, NULL); + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(y, NULL); + PS_ASSERT_VECTOR_NON_NULL(z, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(z, NULL); + + psVector *tmp; + unsigned int vecLen=x->n; + + // Determine the length of output vector from min of the input vectors + if (y->n < vecLen) { + vecLen = y->n; + } + if (z->n < vecLen) { + vecLen = z->n; + } + + // Allocate output vector + tmp = psVectorAlloc(vecLen, PS_TYPE_F64); + + // Evaluate polynomial + // XXX: Consult with IfA: is this how they want to handle multiple data types? + if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial3DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F64[i]); + } + } + + + // Return output vector + return(tmp); +} + +psF64 psPolynomial4DEval( + const psPolynomial4D* poly, + psF64 x, + psF64 y, + psF64 z, + psF64 t) +{ + PS_ASSERT_POLY_NON_NULL(poly, NAN); + + if (poly->type == PS_POLYNOMIAL_ORD) { + return(ordPolynomial4DEval(x,y,z,t, poly)); + } else if (poly->type == PS_POLYNOMIAL_CHEB) { + return(chebPolynomial4DEval(x,y,z,t, poly)); + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Unknown polynomial type 0x%x found. Evaluation failed."), + poly->type); + } + return(NAN); +} + +psVector *psPolynomial4DEvalVector( + const psPolynomial4D *poly, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t) +{ + PS_ASSERT_POLY_NON_NULL(poly, NULL); + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(y, NULL); + PS_ASSERT_VECTOR_NON_NULL(z, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(z, NULL); + PS_ASSERT_VECTOR_NON_NULL(t, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(t, NULL); + + psVector *tmp; + unsigned int vecLen=x->n; + + // Determine output vector size from min of input vectors + if (z->n < vecLen) { + vecLen = z->n; + } + if (y->n < vecLen) { + vecLen = y->n; + } + if (t->n < vecLen) { + vecLen = t->n; + } + + // Allocoutput vector + tmp = psVectorAlloc(vecLen, PS_TYPE_F64); + + // Evaluate polynomial + // XXX: Consult with IfA: is this how they want to handle multiple data types? + if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F32[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F32[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F64[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F32[i], z->data.F64[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F32[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F32[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F64[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F32) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F32[i], + y->data.F64[i], z->data.F64[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F32[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F32[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F64[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F32) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F32[i], z->data.F64[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F32[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F32) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F32[i], t->data.F64[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F32)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F64[i], t->data.F32[i]); + } + } else if ((x->type.type == PS_TYPE_F64) && (y->type.type == PS_TYPE_F64) + && (z->type.type == PS_TYPE_F64) && (t->type.type == PS_TYPE_F64)) { + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, x->data.F64[i], + y->data.F64[i], z->data.F64[i], + t->data.F64[i]); + } + } + + + // Evaluate polynomial + for (unsigned int i = 0; i < vecLen; i++) { + tmp->data.F64[i] = psPolynomial4DEval(poly, + x->data.F64[i], + y->data.F64[i], + z->data.F64[i], + t->data.F64[i]); + } + + // Return output vector + return(tmp); +} + Index: /branches/rel-1-1/psLib/src/math/psPolynomial.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomial.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomial.h (revision 12167) @@ -0,0 +1,350 @@ +/* @file psPolynomial.h + * @brief Standard Mathematical Functions. + * + * This file will hold the prototypes for procedures which allocate, free, + * and evaluate various polynomials. Those polynomial structures are also + * defined here. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.67 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_POLYNOMIAL_H +#define PS_POLYNOMIAL_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include +#include +#include +#include + +#include "psVector.h" +#include "psScalar.h" + +/** Evaluate a non-normalized Gaussian with the given mean and sigma at the + * given coordianate. + * + * Note that this is not a Gaussian deviate. The evaluated Gaussian is: + * \f[ exp(-\frac{(x-mean)^2}{2\sigma^2}) \f] + * + * @return float value on the gaussian curve given the input parameters + */ +float psGaussian( + float x, ///< Value at which to evaluate + float mean, ///< Mean for the Gaussian + float sigma, ///< Standard deviation for the Gaussian + bool normal ///< Indicates whether result should be normalized +); + +/** Polynomial Type. + * + * Enumeration for Polynomial types. + */ +typedef enum { + PS_POLYNOMIAL_ORD, ///< Ordinary Polynomial + PS_POLYNOMIAL_CHEB ///< Chebyshev Polynomial +} +psPolynomialType; + +/** One-dimensional polynomial */ +typedef struct +{ + psPolynomialType type; ///< Polynomial type + unsigned int nX; ///< Polynomial order + psF64 *coeff; ///< Coefficients + psF64 *coeffErr; ///< Error in coefficients + psMaskType *mask; ///< Coefficient mask +} +psPolynomial1D; + +/** Two-dimensional polynomial */ +typedef struct +{ + psPolynomialType type; ///< Polynomial type + unsigned int nX; ///< Polynomial order in x + unsigned int nY; ///< Polynomial order in y + psF64 **coeff; ///< Coefficients + psF64 **coeffErr; ///< Error in coefficients + psMaskType **mask; ///< Coefficients mask +} +psPolynomial2D; + +/** Three-dimensional polynomial */ +typedef struct +{ + psPolynomialType type; ///< Polynomial type + unsigned int nX; ///< Polynomial order in x + unsigned int nY; ///< Polynomial order in y + unsigned int nZ; ///< Polynomial order in z + psF64 ***coeff; ///< Coefficients + psF64 ***coeffErr; ///< Error in coefficients + psMaskType ***mask; ///< Coefficients mask +} +psPolynomial3D; + +/** Four-dimensional polynomial */ +typedef struct +{ + psPolynomialType type; ///< Polynomial type + unsigned int nX; ///< Polynomial order in x + unsigned int nY; ///< Polynomial order in y + unsigned int nZ; ///< Polynomial order in z + unsigned int nT; ///< Polynomial order in t + psF64 ****coeff; ///< Coefficients + psF64 ****coeffErr; ///< Error in coefficients + psMaskType ****mask; ///< Coefficients mask +} +psPolynomial4D; + + +/** Allocates a psPolynomial1D structure with n terms + * + * @return psPolynomial1D* new 1-D polynomial struct + */ +psPolynomial1D* psPolynomial1DAlloc( + psPolynomialType type, ///< Polynomial Type + unsigned int nX ///< Number of terms +); + +/** Allocates a 2-D polynomial structure + * + * @return psPolynomial2D* new 2-D polynomial struct + */ +psPolynomial2D* psPolynomial2DAlloc( + psPolynomialType type, ///< Polynomial Type + unsigned int nX, ///< Number of terms in x + unsigned int nY ///< Number of terms in y +); + +/** Allocates a 3-D polynomial structure + * + * @return psPolynomial3D* new 3-D polynomial struct + */ +psPolynomial3D* psPolynomial3DAlloc( + psPolynomialType type, ///< Polynomial Type + unsigned int nX, ///< Number of terms in x + unsigned int nY, ///< Number of terms in y + unsigned int nZ ///< Number of terms in z +); + +/** Allocates a 4-D polynomial structure + * + * @return psPolynomial4D* new 4-D polynomial struct + */ +psPolynomial4D* psPolynomial4DAlloc( + psPolynomialType type, ///< Polynomial Type + unsigned int nX, ///< Number of terms in x + unsigned int nY, ///< Number of terms in y + unsigned int nZ, ///< Number of terms in z + unsigned int nT ///< Number of terms in t +); + +bool psPolynomial2DRecycle(psPolynomial2D *poly, + psPolynomialType type, + unsigned int nX, + unsigned int nY); + +psPolynomial2D *psPolynomial2DCopy(psPolynomial2D *out, + psPolynomial2D *poly); + +/** Evaluates a 1-D polynomial at specific coordinates. + * + * @return psF64 result of polynomial at given location + */ +psF64 psPolynomial1DEval( + const psPolynomial1D* poly, ///< Coefficients for the polynomial + psF64 x ///< location at which to evaluate +); + +/** Evaluates a 2-D polynomial at specific coordinates. + * + * @return psF64 result of polynomial at given location + */ +psF64 psPolynomial2DEval( + const psPolynomial2D* poly, ///< Coefficients for the polynomial + psF64 x, ///< x location at which to evaluate + psF64 y ///< y location at which to evaluate +); + +/** Evaluates a 3-D polynomial at specific coordinates. + * + * @return psF64 result of polynomial at given location + */ +psF64 psPolynomial3DEval( + const psPolynomial3D* poly, ///< Coefficients for the polynomial + psF64 x, ///< x location at which to evaluate + psF64 y, ///< y location at which to evaluate + psF64 z ///< z location at which to evaluate +); + +/** Evaluates a 4-D polynomial at specific coordinates. + * + * @return psF64 result of polynomial at given location + */ +psF64 psPolynomial4DEval( + const psPolynomial4D* poly, ///< Coefficients for the polynomial + psF64 x, ///< x location at which to evaluate + psF64 y, ///< y location at which to evaluate + psF64 z, ///< z location at which to evaluate + psF64 t ///< t location at which to evaluate +); + +/** Evaluates a 1-D polynomial at specific sets of coordinates + * + * @return psVector* results of polynomials at given locations + */ +psVector *psPolynomial1DEvalVector( + const psPolynomial1D *poly, ///< Coefficients for the polynomial + const psVector *x ///< x locations at which to evaluate +); + +/** Evaluates a 2-D polynomial at specific sets of coordinates + * + * @return psVector* results of polynomial at given locations + */ +psVector *psPolynomial2DEvalVector( + const psPolynomial2D *poly, ///< Coefficients for the polynomial + const psVector *x, ///< x locations at which to evaluate + const psVector *y ///< y locations at which to evaluate +); + +/** Evaluates a 3-D polynomial at specific sets of coordinates + * + * @return psVector* results of polynomial at given locations + */ +psVector *psPolynomial3DEvalVector( + const psPolynomial3D *poly, ///< Coefficients for the polynomial + const psVector *x, ///< x locations at which to evaluate + const psVector *y, ///< y locations at which to evaluate + const psVector *z ///< z locations at which to evaluate +); + +/** Evaluates a 4-D polynomial at specific sets of coordinates + * + * @return psVector* results of polynomial at given locations + */ +psVector *psPolynomial4DEvalVector( + const psPolynomial4D *poly, ///< Coefficients for the polynomial + const psVector *x, ///< x locations at which to evaluate + const psVector *y, ///< y locations at which to evaluate + const psVector *z, ///< z locations at which to evaluate + const psVector *t ///< t locations at which to evaluate +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPolynomial1D structure, false otherwise. + */ +bool psMemCheckPolynomial1D( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPolynomial2D structure, false otherwise. + */ +bool psMemCheckPolynomial2D( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPolynomial3D structure, false otherwise. + */ +bool psMemCheckPolynomial3D( + psPtr ptr ///< the pointer whose type to check +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psPolynomial4D structure, false otherwise. + */ +bool psMemCheckPolynomial4D( + psPtr ptr ///< the pointer whose type to check +); + + + + +/** Creates the specified number of chebyshev polys. + * + * @return psPolynomial1D** The chebyshev polys. + * + */ +psPolynomial1D **p_psCreateChebyshevPolys( + psS32 numPolys +); + +typedef struct +{ + int n; ///< The number of Chebyshev polys. + psPolynomial1D **chebyPolys; ///< THe chebyshev polys + +} +p_chebyPolys; + + +/***************************************************************************** + PS_POLY macros: +*****************************************************************************/ +#define PS_ASSERT_POLY1D(NAME, RVAL) \ +if (false == psMemCheckPolynomial1D(NAME)) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: argument %s is not a psPolynomial1D struct.\n",\ + #NAME); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_POLY_NON_NULL(NAME, RVAL) \ +if ((NAME) == NULL || (NAME)->coeff == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: polynomial %s or its coeffs is NULL.", \ + #NAME); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_POLY_TYPE(NAME, TYPE, RVAL) \ +if ((NAME)->type != TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: polynomial %s has wrong type.", #NAME); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_POLY_VALID_TYPE(TYPE, RVAL) \ +if ((TYPE != PS_POLYNOMIAL_ORD) && \ + (TYPE != PS_POLYNOMIAL_CHEB)) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: invalid type %d for polynomial", TYPE); \ + return(RVAL); \ +} \ + +#define PS_POLY_PRINT_1D(NAME) \ +printf("Poly %s: (nX) is (%d)\n", #NAME, NAME->nX);\ +for (psS32 i = 0 ; i < NAME->nX+1 ; i++) {\ + printf("%s->coeff[%d] is %f\n", #NAME, i, NAME->coeff[i]); \ +}\ + +#define PS_POLY_PRINT_2D(NAME) \ +printf("Poly %s: (nX, nY) is (%d, %d)\n", #NAME, NAME->nX, NAME->nY);\ +for (psS32 i = 0 ; i < NAME->nX+1 ; i++) {\ + for (psS32 j = 0 ; j < NAME->nY+1 ; j++) {\ + printf("%s->coeff[%d][%d] is %f\n", #NAME, i, j, NAME->coeff[i][j]); \ + }\ +}\ + +/// @} +#endif // #ifndef PS_POLYNOMIAL_H Index: /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.c (revision 12167) @@ -0,0 +1,528 @@ +/** @file psPolyMetadata.c + * + * + * @brief Contains metadata structures, enumerations and functions prototypes. + * + * This file defines metadata item, metadata type, metadata flags, metadata containers, and function + * prototypes necessary creating psLib metadata APIs + * + * @ingroup Metadata + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:55:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psType.h" +#include "psMemory.h" +#include "psError.h" +#include "psMetadata.h" +#include "psString.h" + +#include "psAssert.h" + +psPolynomial1D *psPolynomial1DfromMetadata(const psMetadata *folder) +{ + PS_ASSERT_PTR_NON_NULL(folder, NULL); + bool status; + char keyword[80]; + + // get polynomial orders + int nXorder = psMetadataLookupS32 (&status, folder, "NORDER_X"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial1D in metadata is missing NORDER_X"); + return NULL; + } + // how many polynomial coeffs are expected? + int nElementsExpected = psMetadataLookupS32 (&status, folder, "NELEMENTS"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial1D in metadata is missing NELEMENTS"); + return NULL; + } + + psPolynomial1D *poly = psPolynomial1DAlloc (PS_POLYNOMIAL_ORD, nXorder); + + int nElements = 0; + for (int nx = 0; nx < poly->nX + 1; nx++) { + sprintf (keyword, "VAL_X%02d", nx); + poly->coeff[nx] = psMetadataLookupF64 (&status, folder, keyword); + if (!status) { + // an undefined component implies the component was masked + // this is symmetrical with the 1DtoMD function + poly->mask[nx] = 1; + poly->coeff[nx] = 0; + poly->coeffErr[nx] = 0; + } else { + poly->mask[nx] = 0; + nElements ++; + } + sprintf (keyword, "ERR_X%02d", nx); + poly->coeffErr[nx] = psMetadataLookupF64 (&status, folder, keyword); + } + if (nElements != nElementsExpected) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psPolynomial1D in metadata does not have the correct number of coefficients: " + "%d found vs %d expected", nElements, nElementsExpected); + psFree(poly); + return NULL; + } + return (poly); +} + +// XXX : these may need F64, or %g format for output +bool psPolynomial1DtoMetadata(psMetadata *md, + const psPolynomial1D *poly, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + PS_ASSERT_PTR_NON_NULL(poly, false); + //XXX: Current implementation only supports ordinary polynomials. + if (poly->type != PS_POLYNOMIAL_ORD) + return false; + + int Nbyte; + char tmp; + char *root; + va_list argp; + + va_start (argp, format); + Nbyte = vsnprintf (&tmp, 0, format, argp); + va_end (argp); + + if (Nbyte <= 0) + return false; + + va_start (argp, format); + root = (char *) psAlloc (Nbyte + 1); + memset (root, 0, Nbyte + 1); + vsnprintf (root, Nbyte + 1, format, argp); + va_end (argp); + + psMetadata *folder = psMetadataAlloc (); + + // specify the polynomial orders + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_X", PS_DATA_S32, "number of x orders", poly->nX); + + char namespace[80]; + char namespace_err[80]; + int nElements = 0; // count the number of unmasked elements + + // place polynomial entries on folder + for (int nx = 0; nx < poly->nX + 1; nx++) { + if (poly->mask[nx] == 0) { + sprintf(namespace, "VAL_X%02d", nx); + sprintf(namespace_err, "ERR_X%02d", nx); + psMetadataAdd (folder, PS_LIST_TAIL, namespace, PS_DATA_F64, + "polynomial coefficient", poly->coeff[nx]); + psMetadataAdd (folder, PS_LIST_TAIL, namespace_err, PS_DATA_F64, + "polynomial coefficient error", poly->coeffErr[nx]); + nElements ++; + } + } + psMetadataAdd (folder, PS_LIST_TAIL, "NELEMENTS", PS_DATA_S32, "number of unmasked coeffs", nElements); + psMetadataAdd (md, PS_LIST_TAIL, root, PS_DATA_METADATA, "folder for 1D polynomial", folder); + psFree (root); + psFree(folder); + return true; +} + +psPolynomial2D *psPolynomial2DfromMetadata(const psMetadata *folder) +{ + PS_ASSERT_PTR_NON_NULL(folder, NULL); + bool status; + char keyword[80]; + + // get polynomial orders + int nXorder = psMetadataLookupS32 (&status, folder, "NORDER_X"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial2D in metadata is missing NORDER_X"); + return NULL; + } + int nYorder = psMetadataLookupS32 (&status, folder, "NORDER_Y"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial2D in metadata is missing NORDER_Y"); + return NULL; + } + // how many polynomial coeffs are expected? + int nElementsExpected = psMetadataLookupS32 (&status, folder, "NELEMENTS"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial2D in metadata is missing NELEMENTS"); + return NULL; + } + + psPolynomial2D *poly = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, nXorder, nYorder); + + int nElements = 0; + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + sprintf (keyword, "VAL_X%02d_Y%02d", nx, ny); + poly->coeff[nx][ny] = psMetadataLookupF64 (&status, folder, keyword); + if (!status) { + // an undefined component implies the component was masked + // this is symmetrical with the 2DtoMD function + poly->mask[nx][ny] = 1; + poly->coeff[nx][ny] = 0; + poly->coeffErr[nx][ny] = 0; + } else { + poly->mask[nx][ny] = 0; + nElements ++; + } + sprintf (keyword, "ERR_X%02d_Y%02d", nx, ny); + poly->coeffErr[nx][ny] = psMetadataLookupF64 (&status, folder, keyword); + } + } + if (nElements != nElementsExpected) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psPolynomial2D in metadata does not have the correct number of coefficients: " + "%d found vs %d expected", nElements, nElementsExpected); + psFree(poly); + return NULL; + } + return (poly); +} + +// XXX : these may need F64, or %g format for output +bool psPolynomial2DtoMetadata (psMetadata *md, + const psPolynomial2D *poly, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + PS_ASSERT_PTR_NON_NULL(poly, false); + //XXX: Current implementation only supports ordinary polynomials. + if (poly->type != PS_POLYNOMIAL_ORD) + return false; + + // XXX I'm puzzled by this test. a polynomial of 0 order with a value of 0 is a + // perfectly valid polynomial and can be written out. a polynomial with all elements + // masked still carries information. + //Make sure polynomial isn't 0, completely empty + //if (poly->nX == 0 && poly->nY == 0 && poly->coeff[0][0] == 0) + //return false; + + int Nbyte; + char tmp; + char *root; + va_list argp; + + va_start (argp, format); + Nbyte = vsnprintf (&tmp, 0, format, argp); + va_end (argp); + + if (Nbyte <= 0) + return false; + + va_start (argp, format); + root = (char *) psAlloc (Nbyte + 1); + memset (root, 0, Nbyte + 1); + vsnprintf (root, Nbyte + 1, format, argp); + va_end (argp); + + psMetadata *folder = psMetadataAlloc (); + + // specify the polynomial orders + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_X", PS_DATA_S32, "number of x orders", poly->nX); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_Y", PS_DATA_S32, "number of y orders", poly->nY); + + char namespace[80]; + char namespace_err[80]; + int nElements = 0; // count the number of unmasked elements + + // place polynomial entries on folder + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + if (poly->mask[nx][ny] == 0) { + sprintf(namespace, "VAL_X%02d_Y%02d", nx, ny); + sprintf(namespace_err, "ERR_X%02d_Y%02d", nx, ny); + psMetadataAdd (folder, PS_LIST_TAIL, namespace, PS_DATA_F64, + "polynomial coefficient", poly->coeff[nx][ny]); + psMetadataAdd (folder, PS_LIST_TAIL, namespace_err, PS_DATA_F64, + "polynomial coefficient error", poly->coeffErr[nx][ny]); + nElements ++; + } + } + } + psMetadataAdd (folder, PS_LIST_TAIL, "NELEMENTS", PS_DATA_S32, "number of unmasked coeffs", nElements); + psMetadataAdd (md, PS_LIST_TAIL, root, PS_DATA_METADATA, "folder for 2D polynomial", folder); + psFree (root); + psFree(folder); + return true; +} + +psPolynomial3D *psPolynomial3DfromMetadata (const psMetadata *folder) +{ + PS_ASSERT_PTR_NON_NULL(folder, NULL); + + bool status; + char keyword[80]; + + // get polynomial orders + int nXorder = psMetadataLookupS32 (&status, folder, "NORDER_X"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial3D in metadata is missing NORDER_X"); + return NULL; + } + int nYorder = psMetadataLookupS32 (&status, folder, "NORDER_Y"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial3D in metadata is missing NORDER_Y"); + return NULL; + } + int nZorder = psMetadataLookupS32 (&status, folder, "NORDER_Z"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial3D in metadata is missing NORDER_Z"); + return NULL; + } + // how many polynomial coeffs are expected? + int nElementsExpected = psMetadataLookupS32 (&status, folder, "NELEMENTS"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial3D in metadata is missing NELEMENTS"); + return NULL; + } + + psPolynomial3D *poly = psPolynomial3DAlloc (PS_POLYNOMIAL_ORD, nXorder, nYorder, nZorder); + + int nElements = 0; + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + for (int nz = 0; nz < poly->nZ + 1; nz++) { + sprintf (keyword, "VAL_X%02d_Y%02d_Z%02d", nx, ny, nz); + poly->coeff[nx][ny][nz] = psMetadataLookupF64 (&status, folder, keyword); + if (!status) { + // an undefined component implies the component was masked + // this is symmetrical with the 3DtoMD function + poly->mask[nx][ny][nz] = 1; + poly->coeff[nx][ny][nz] = 0; + poly->coeffErr[nx][ny][nz] = 0; + } else { + poly->mask[nx][ny][nz] = 0; + nElements ++; + } + sprintf (keyword, "ERR_X%02d_Y%02d_Z%02d", nx, ny, nz); + poly->coeffErr[nx][ny][nz] = psMetadataLookupF64 (&status, folder, keyword); + } + } + } + if (nElements != nElementsExpected) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psPolynomial3D in metadata does not have the correct number of coefficients: " + "%d found vs %d expected", nElements, nElementsExpected); + psFree(poly); + return NULL; + } + return (poly); +} + +bool psPolynomial3DtoMetadata (psMetadata *md, + const psPolynomial3D *poly, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + PS_ASSERT_PTR_NON_NULL(poly, false); + //XXX: Current implementation only supports ordinary polynomials. + if (poly->type != PS_POLYNOMIAL_ORD) + return false; + + int Nbyte; + char tmp; + char *root; + va_list argp; + + va_start (argp, format); + Nbyte = vsnprintf (&tmp, 0, format, argp); + va_end (argp); + + if (Nbyte <= 0) + return false; + + va_start (argp, format); + root = (char *) psAlloc (Nbyte + 1); + memset (root, 0, Nbyte + 1); + vsnprintf (root, Nbyte + 1, format, argp); + va_end (argp); + + psMetadata *folder = psMetadataAlloc (); + + // specify the polynomial orders + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_X", PS_DATA_S32, "number of x orders", poly->nX); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_Y", PS_DATA_S32, "number of y orders", poly->nY); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_Z", PS_DATA_S32, "number of z orders", poly->nZ); + + char namespace[80]; + char namespace_err[80]; + int nElements = 0; // count the number of unmasked elements + + // place polynomial entries on folder + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + for (int nz = 0; nz < poly->nZ + 1; nz++) { + if (poly->mask[nx][ny][nz] == 0) { + sprintf(namespace, "VAL_X%02d_Y%02d_Z%02d", nx, ny, nz); + sprintf(namespace_err, "ERR_X%02d_Y%02d_Z%02d", nx, ny, nz); + psMetadataAdd (folder, PS_LIST_TAIL, namespace, + PS_DATA_F64, "polynomial coefficient", + poly->coeff[nx][ny][nz], nx, ny, nz); + psMetadataAdd (folder, PS_LIST_TAIL, namespace_err, + PS_DATA_F64, "polynomial coeffficient error", + poly->coeffErr[nx][ny][nz], nx, ny, nz); + nElements ++; + } + } + } + } + psMetadataAdd (folder, PS_LIST_TAIL, "NELEMENTS", PS_DATA_S32, "number of unmasked coeffs", nElements); + psMetadataAdd (md, PS_LIST_TAIL, root, PS_DATA_METADATA, "folder for 3D polynomial", folder); + psFree(root); + psFree(folder); + return true; +} + +psPolynomial4D *psPolynomial4DfromMetadata(const psMetadata *folder) +{ + PS_ASSERT_PTR_NON_NULL(folder, NULL); + + bool status; + char keyword[80]; + + int nXorder = psMetadataLookupS32 (&status, folder, "NORDER_X"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial4D in metadata is missing NORDER_X"); + return NULL; + } + int nYorder = psMetadataLookupS32 (&status, folder, "NORDER_Y"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial4D in metadata is missing NORDER_Y"); + return NULL; + } + int nZorder = psMetadataLookupS32 (&status, folder, "NORDER_Z"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial4D in metadata is missing NORDER_Z"); + return NULL; + } + int nTorder = psMetadataLookupS32 (&status, folder, "NORDER_T"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial4D in metadata is missing NORDER_T"); + return NULL; + } + // how many polynomial coeffs are expected? + int nElementsExpected = psMetadataLookupS32 (&status, folder, "NELEMENTS"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPolynomial4D in metadata is missing NELEMENTS"); + return NULL; + } + + psPolynomial4D *poly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, nXorder, nYorder, nZorder, nTorder); + + int nElements = 0; + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + for (int nz = 0; nz < poly->nZ + 1; nz++) { + for (int nt = 0; nt < poly->nT + 1; nt++) { + sprintf (keyword, "VAL_X%02d_Y%02d_Z%02d_T%02d", nx, ny, nz, nt); + poly->coeff[nx][ny][nz][nt] = psMetadataLookupF64 (&status, folder, keyword); + if (!status) { + // an undefined component implies the component was masked + // this is symmetrical with the 4DtoMD function + poly->mask[nx][ny][nz][nt] = 1; + poly->coeff[nx][ny][nz][nt] = 0; + poly->coeffErr[nx][ny][nz][nt] = 0; + } else { + poly->mask[nx][ny][nz][nt] = 0; + nElements ++; + } + sprintf (keyword, "ERR_X%02d_Y%02d_Z%02d_T%02d", nx, ny, nz, nt); + poly->coeffErr[nx][ny][nz][nt] = psMetadataLookupF64 (&status, folder, keyword); + } + } + } + } + if (nElements != nElementsExpected) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psPolynomial4D in metadata does not have the correct number of coefficients: " + "%d found vs %d expected", nElements, nElementsExpected); + psFree(poly); + return NULL; + } + return (poly); +} + +bool psPolynomial4DtoMetadata (psMetadata *md, + const psPolynomial4D *poly, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + PS_ASSERT_PTR_NON_NULL(poly, false); + //XXX: Current implementation only supports ordinary polynomials. + if (poly->type != PS_POLYNOMIAL_ORD) + return false; + + int Nbyte; + char tmp; + char *root; + va_list argp; + + va_start (argp, format); + Nbyte = vsnprintf (&tmp, 0, format, argp); + va_end (argp); + + if (Nbyte <= 0) + return false; + + va_start (argp, format); + root = (char *) psAlloc (Nbyte + 1); + memset (root, 0, Nbyte + 1); + vsnprintf (root, Nbyte + 1, format, argp); + va_end (argp); + + psMetadata *folder = psMetadataAlloc (); + + // specify the polynomial orders + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_X", PS_DATA_S32, "number of x orders", poly->nX); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_Y", PS_DATA_S32, "number of y orders", poly->nY); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_Z", PS_DATA_S32, "number of z orders", poly->nZ); + psMetadataAdd (folder, PS_LIST_TAIL, "NORDER_T", PS_DATA_S32, "number of t orders", poly->nT); + + char namespace[80]; + char namespace_err[80]; + int nElements = 0; // count the number of unmasked elements + + // place polynomial entries on folder + for (int nx = 0; nx < poly->nX + 1; nx++) { + for (int ny = 0; ny < poly->nY + 1; ny++) { + for (int nz = 0; nz < poly->nZ + 1; nz++) { + for (int nt = 0; nt < poly->nT + 1; nt++) { + if (poly->mask[nx][ny][nz][nt] == 0) { + sprintf(namespace, "VAL_X%02d_Y%02d_Z%02d_T%02d", nx, ny, nz, nt); + sprintf(namespace_err, "ERR_X%02d_Y%02d_Z%02d_T%02d", nx, ny, nz, nt); + psMetadataAdd (folder, PS_LIST_TAIL, namespace, + PS_DATA_F64, "polynomial coefficient", + poly->coeff[nx][ny][nz][nt], nx, ny, nz, nt); + psMetadataAdd (folder, PS_LIST_TAIL, namespace_err, + PS_DATA_F64, "polynomial coeffficient error", + poly->coeffErr[nx][ny][nz][nt], nx, ny, nz, nt); + nElements ++; + } + } + } + } + } + psMetadataAdd (folder, PS_LIST_TAIL, "NELEMENTS", PS_DATA_S32, "number of unmasked coeffs", nElements); + psMetadataAdd (md, PS_LIST_TAIL, root, PS_DATA_METADATA, "folder for 4D polynomial", folder); + psFree(root); + psFree(folder); + return true; +} Index: /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomialMetadata.h (revision 12167) @@ -0,0 +1,157 @@ +/* @file psPolyMetdata.h + * @brief Standard Mathematical Functions. + * + * This file will hold the prototypes for procedures which allocate, free, + * and evaluate various polynomials. Those polynomial structures are also + * defined here. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:55:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_POLYMETADATA_H +#define PS_POLYMETADATA_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/** Allocates a new psPolynomial1D structure with information from a psMetadata. + * + * Parses a psMetadata container with psPolynomial1D information. The first two + * elements of the metadata folder specify the order of the x & y variables. (ie, + * NORDER_X, NORDER_Y). The following elements are the values of the coefficients + * and the coefficient errors. (ie, VAL_X00_Y00, ERR_X00_Y00, etc.). If the orders + * or any coefficients are missing or have incorrect syntax, NULL is returned. + * + * @return psPolynomial1D*: Newly allocated psPolynomial1D from metadata. + */ +psPolynomial1D *psPolynomial1DfromMetadata( + const psMetadata *folder ///< folder containing the polynomial info. +); + +/** Stores the information from a psPolynomial1D structure in a psMetadata container. + * + * Creates a psMetadata folder with psPolynomial1D information. The first two + * elements of the metadata folder specify the order of the x & y variables. (ie, + * NORDER_X, NORDER_Y). The following elements are the values of the coefficients + * and the coefficient errors. (ie, VAL_X00_Y00, ERR_X00_Y00, etc.). The input + * polynomial must be of ordinary type and have a valid name format. False is also + * returned if any inputs are NULL. *If a particular mask element is non-zero, that + * polynomial coefficient (and error) are skipped. + * + * @return bool: True if successful, otherwise false. + */ +bool psPolynomial1DtoMetadata( + psMetadata *md, ///< Metadata container for polynomial storage. + const psPolynomial1D *poly, ///< Polynomial information to be stored. + const char *format, ///< Name of polynomial folder. + ... ///< Arguments for name formatting. +); + +/** Allocates a new psPolynomial2D structure with information from a psMetadata. + * + * Parses a psMetadata container with psPolynomial2D information. The first two + * elements of the metadata folder specify the order of the x & y variables. (ie, + * NORDER_X, NORDER_Y). The following elements are the values of the coefficients + * and the coefficient errors. (ie, VAL_X00_Y00, ERR_X00_Y00, etc.). If the orders + * or any coefficients are missing or have incorrect syntax, NULL is returned. + * + * @return psPolynomial2D*: Newly allocated psPolynomial2D from metadata. + */ +psPolynomial2D *psPolynomial2DfromMetadata( + const psMetadata *folder ///< folder containing the polynomial info. +); + +/** Stores the information from a psPolynomial2D structure in a psMetadata container. + * + * Creates a psMetadata folder with psPolynomial2D information. The first two + * elements of the metadata folder specify the order of the x & y variables. (ie, + * NORDER_X, NORDER_Y). The following elements are the values of the coefficients + * and the coefficient errors. (ie, VAL_X00_Y00, ERR_X00_Y00, etc.). The input + * polynomial must be of ordinary type and have a valid name format. False is also + * returned if any inputs are NULL. *If a particular mask element is non-zero, that + * polynomial coefficient (and error) are skipped. + * + * @return bool: True if successful, otherwise false. + */ +bool psPolynomial2DtoMetadata( + psMetadata *md, ///< Metadata container for polynomial storage. + const psPolynomial2D *poly, ///< Polynomial information to be stored. + const char *format, ///< Name of polynomial folder. + ... ///< Arguments for name formatting. +); + +/** Allocates a new psPolynomial3D structure with information from a psMetadata. + * + * Parses a psMetadata container with psPolynomial3D information. The first three + * elements of the metadata folder specify the order of the x, y, & z variables. (ie, + * NORDER_X, NORDER_Y, NORDER_Z). The following elements are the values of the + * coefficients and the coefficient errors. (ie, VAL_X00_Y00_Z00, ERR_X00_Y00_Z00, + * etc.). If the orders or any coefficients are missing or have incorrect syntax, + * NULL is returned. + * + * @return psPolynomial3D*: Newly allocated psPolynomial3D from metadata. + */ +psPolynomial3D *psPolynomial3DfromMetadata( + const psMetadata *folder ///< folder containing the polynomial info. +); + +/** Stores the information from a psPolynomial3D structure in a psMetadata container. + * + * Creates a psMetadata folder with psPolynomial3D information. The first three + * elements of the metadata folder specify the order of the x, y, & z variables. (ie, + * NORDER_X, NORDER_Y, NORDER_Z). The following elements are the values of the + * coefficients and the coefficient errors. (ie, VAL_X00_Y00_Z00, ERR_X00_Y00_Z00, + * etc.). The input polynomial must be of ordinary type and have a valid name format. + * False is also returned if any inputs are NULL. *If a particular mask element is + * non-zero, that polynomial coefficient (and error) are skipped. + * + * @return bool: True if successful, otherwise false. + */ +bool psPolynomial3DtoMetadata( + psMetadata *md, ///< Metadata container for polynomial storage. + const psPolynomial3D *poly, ///< Polynomial information to be stored. + const char *format, ///< Name of polynomial folder. + ... ///< Arguments for name formatting. +); + +/** Allocates a new psPolynomial4D structure with information from a psMetadata. + * + * Parses a psMetadata container with psPolynomial4D information. The first four + * elements of the metadata folder specify the order of the x, y, z, & t variables. + * (ie, NORDER_X, NORDER_Y, NORDER_Z, NORDER_T). The following elements are the + * values of the coefficients and the coefficient errors. (ie, VAL_X00_Y00_Z00_T00, + * ERR_X00_Y00_Z00_T00, etc.). If the orders or any coefficients are missing or + * have incorrect syntax, NULL is returned. + * + * @return psPolynomial4D*: Newly allocated psPolynomial4D from metadata. + */ +psPolynomial4D *psPolynomial4DfromMetadata( + const psMetadata *folder ///< folder containing the polynomial info. +); + +/** Stores the information from a psPolynomial4D structure in a psMetadata container. + * + * Creates a psMetadata folder with psPolynomial4D information. The first four + * elements of the metadata folder specify the order of the x, y, z, & t variables. + * (ie, NORDER_X, NORDER_Y, NORDER_Z, NORDER_T). The following elements are the values + * of the coefficients and the coefficient errors. (ie, VAL_X00_Y00_Z00_T00, + * ERR_X00_Y00_Z00_T00, etc.). The input polynomial must be of ordinary type and have + * a valid name format. False is also returned if any inputs are NULL. *If a particular + * mask element is non-zero, that polynomial coefficient (and error) are skipped. + * + * @return bool: True if successful, otherwise false. + */ +bool psPolynomial4DtoMetadata( + psMetadata *md, ///< Metadata container for polynomial storage. + const psPolynomial4D *poly, ///< Polynomial information to be stored. + const char *format, ///< Name of polynomial folder. + ... ///< Arguments for name formatting. +); + +/// @} +#endif // #ifndef PS_POLYMETADATA_H Index: /branches/rel-1-1/psLib/src/math/psPolynomialUtils.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomialUtils.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomialUtils.c (revision 12167) @@ -0,0 +1,245 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include "psMemory.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psVector.h" +#include "psImage.h" +#include "psBinaryOp.h" +#include "psStats.h" +#include "psAssert.h" +#include "psPolynomial.h" +#include "psMinimizePolyFit.h" +#include "psCoord.h" +#include "psPolynomialUtils.h" + +bool psVectorChiClipFitPolynomial4D( + psPolynomial4D *poly, + psStats *stats, + const psVector *mask, + psMaskType maskValue, + const psVector *f, + const psVector *fErr, + const psVector *x, + const psVector *y, + const psVector *z, + const psVector *t) +{ + PS_ASSERT_POLY_NON_NULL(poly, NULL); + PS_ASSERT_POLY_TYPE(poly, PS_POLYNOMIAL_ORD, NULL); + PS_ASSERT_PTR_NON_NULL(stats, NULL); + PS_ASSERT_VECTOR_NON_NULL(f, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(f, NULL); + if (mask != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(f, mask, NULL); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, NULL); + } + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(y, NULL); + PS_ASSERT_VECTOR_NON_NULL(z, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, z, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(z, NULL); + PS_ASSERT_VECTOR_NON_NULL(t, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(f, t, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(t, NULL); + PS_ASSERT_VECTOR_NON_NULL(fErr, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(fErr, mask, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(fErr, NULL); + + // clipping range defined by min and max and/or clipSigma + float minClipSigma; + float maxClipSigma; + if (isfinite(stats->max)) { + maxClipSigma = +fabs(stats->max); + } else { + maxClipSigma = +fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minClipSigma = -fabs(stats->min); + } else { + minClipSigma = -fabs(stats->clipSigma); + } + psVector *fit = NULL; + psVector *resid = psVectorAlloc (x->n, PS_TYPE_F64); + + // eventual expansion: user supplies one of various stats option pairs, + // eg (SAMPLE_MEAN | SAMPLE_STDEV) and the correct pair is used to + // evaluate the clipping sigma + // for now, for the SAMPLE_MEDIAN and SAMPLE_STDEV to be used + stats->options |= (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + + for (int N = 0; N < stats->clipIter; N++) { + int Nkeep = 0; + + if (!psVectorFitPolynomial4D (poly, mask, maskValue, f, fErr, x, y, z, t)) { + psError(PS_ERR_UNKNOWN, true, "Could not fit a polynomial to the data. Returning NULL.\n"); + psFree (resid); + return false; + } + + fit = psPolynomial4DEvalVector (poly, x, y, z, t); + if (fit == NULL) { + psError(PS_ERR_UNKNOWN, false, "Could not call psPolynomial4DEvalVector(). Returning NULL.\n"); + psFree(resid); + return false; + } + + resid = (psVector *) psBinaryOp (resid, (void *) f, "-", (void *) fit); + + if (!psVectorStats (stats, resid, NULL, mask, maskValue)) { + psError(PS_ERR_UNKNOWN, false, "failed to measure vector stats"); + psFree (fit); + psFree (resid); + return false; + } + psTrace (__func__, 5, "resid stats: %f +/- %f\n", stats->sampleMedian, stats->sampleStdev); + + // set mask if pts are not valid + // we are masking out any point which is out of range + // recovery is not allowed with this scheme + for (int i = 0; i < resid->n; i++) { + if ((mask != NULL) && (mask->data.U8[i] & maskValue)) { + continue; + } + float sigma = hypot (psVectorGet (fErr, i), stats->sampleStdev); + if (resid->data.F64[i] - stats->sampleMedian > sigma*maxClipSigma) { + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + if (resid->data.F64[i] - stats->sampleMedian < sigma*minClipSigma) { + if (mask != NULL) { + mask->data.U8[i] |= 0x01; + } + continue; + } + Nkeep ++; + } + + psTrace (__func__, 4, "keeping %d of %ld pts for fit\n", Nkeep, x->n); + stats->clippedNvalues = Nkeep; + psFree (fit); + } + // Free local temporary variables + psFree (resid); + + return true; +} + +// this function expect x,y in parent coords +psPolynomial2D *psImageBicubeFit(const psImage *image, int x, int y) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + + int ix = x - image->col0; + int iy = y - image->row0; + + PS_ASSERT_INT_WITHIN_RANGE(ix, 1, image->numCols - 1, NULL); + PS_ASSERT_INT_WITHIN_RANGE(iy, 1, image->numRows - 1, NULL); + + psF32 *Fm = &image->data.F32[iy - 1][ix]; + psF32 *Fo = &image->data.F32[iy + 0][ix]; + psF32 *Fp = &image->data.F32[iy + 1][ix]; + + double Fxm = Fm[-1] + Fo[-1] + Fp[-1]; + double Fxp = Fm[+1] + Fo[+1] + Fp[+1]; + double Fym = Fm[-1] + Fm[+0] + Fm[+1]; + double Fyp = Fp[-1] + Fp[+0] + Fp[+1]; + double Foo = Fym + Fyp + Fo[-1] + Fo[+0] + Fo[+1]; + + psPolynomial2D *poly = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, 2, 2); + poly->mask[2][2] = 1; + poly->mask[1][2] = 1; + poly->mask[2][1] = 1; + + poly->coeff[0][0] = Foo*(5.0/9.0) - (Fxp + Fxm)/3.0 - (Fyp + Fym)/3.0 ; + + poly->coeff[1][0] = (Fxp - Fxm)/6.0; + poly->coeff[0][1] = (Fyp - Fym)/6.0; + + poly->coeff[2][0] = (Fxp + Fxm)/2.0 - Foo/3.0; + poly->coeff[0][2] = (Fyp + Fym)/2.0 - Foo/3.0; + + poly->coeff[1][1] = (Fp[+1] + Fm[-1] - Fm[+1] - Fp[-1])/4.0; + + return poly; +} + +psPlane psImageBicubeMin(const psPolynomial2D *poly) +{ + psPlane min = { NAN, NAN, 0, 0 }; // Minimum value to return + + PS_ASSERT_PTR_NON_NULL(poly, min); + PS_ASSERT_INT_EQUAL(poly->nX, 2, min); + PS_ASSERT_INT_EQUAL(poly->nY, 2, min); + + double det = 4*poly->coeff[2][0]*poly->coeff[0][2] - PS_SQR(poly->coeff[1][1]); // Determinant + min.x = (poly->coeff[1][1]*poly->coeff[0][1] - 2*poly->coeff[0][2]*poly->coeff[1][0]) / det; + min.y = (poly->coeff[1][1]*poly->coeff[1][0] - 2*poly->coeff[2][0]*poly->coeff[0][1]) / det; + + return min; +} + +psPolynomial2D *psPolynomial2D_dX (psPolynomial2D *out, psPolynomial2D *poly) +{ + int nXout = poly->nX - 1; + int nYout = poly->nY; + + if (out == poly) { + psError(PS_ERR_UNKNOWN, false, "cannot assign output to input polynomial"); + return NULL; + } + + if (poly->nX == 0) + return NULL; + + if (out == NULL) { + out = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, nXout, nYout); + } else { + psPolynomial2DRecycle (out, poly->type, nXout, nYout); + } + + for (int i = 0; i < nXout + 1; i++) { + for (int j = 0; j < nYout + 1; j++) { + out->mask[i][j] = poly->mask[i+1][j]; + out->coeff[i][j] = poly->coeff[i+1][j] * (i+1); + } + } + return out; +} + +psPolynomial2D *psPolynomial2D_dY (psPolynomial2D *out, psPolynomial2D *poly) +{ + int nXout = poly->nX; + int nYout = poly->nY - 1; + + if (out == poly) { + psError(PS_ERR_UNKNOWN, false, "cannot assign output to input polynomial"); + return NULL; + } + + if (poly->nY == 0) + return NULL; + + if (out == NULL) { + out = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, nXout, nYout); + } else { + psPolynomial2DRecycle (out, poly->type, nXout, nYout); + } + + for (int i = 0; i < nXout + 1; i++) { + for (int j = 0; j < nYout + 1; j++) { + out->mask[i][j] = poly->mask[i][j+1]; + out->coeff[i][j] = poly->coeff[i][j+1] * (j+1); + } + } + return out; +} Index: /branches/rel-1-1/psLib/src/math/psPolynomialUtils.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psPolynomialUtils.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psPolynomialUtils.h (revision 12167) @@ -0,0 +1,47 @@ +/* @file psPolynomialUtils.h + * @brief extra psPolynomial-related functions + * + * $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_POLYNOMIAL_UTILS_H +#define PS_POLYNOMIAL_UTILS_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psVector.h" +#include "psImage.h" +#include "psCoord.h" +#include "psStats.h" +#include "psPolynomial.h" + +// perform vector clip-fit based on significance of deviations +bool psVectorChiClipFitPolynomial4D( + psPolynomial4D *poly, // Polynomial to fit + psStats *stats, // Statistics to use in clipping + const psVector *mask, // Mask for input values + psMaskType maskValue, // Mask value + const psVector *f, // Value of the function, f(x,y,z,t) + const psVector *fErr, // Error in the value + const psVector *x, // x ordinate + const psVector *y, // y ordinate + const psVector *z, // z ordinate + const psVector *t // t ordinate +); + +// fit a 2D 2nd order polynomial to the 9 pixels centered on (x,y) +psPolynomial2D *psImageBicubeFit(const psImage *image, // Image to fit + int x, int y // Pixels of centre of fit + ); + +// detemine the min(max) of the special 2D 2nd order polynomial +psPlane psImageBicubeMin(const psPolynomial2D *poly // The polynomial + ); +psPolynomial2D *psPolynomial2D_dX (psPolynomial2D *out, psPolynomial2D *poly); +psPolynomial2D *psPolynomial2D_dY (psPolynomial2D *out, psPolynomial2D *poly); + +/// @} +#endif /* PS_POLY_UTILS_H */ Index: /branches/rel-1-1/psLib/src/math/psRandom.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psRandom.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRandom.c (revision 12167) @@ -0,0 +1,162 @@ +/** @file psRandom.c +* \brief Random Number Generators +* \ingroup Math +* +* This file will hold the functions which allocate, free, +* and evaluate random number Generators. +* +* @ingroup Math +* +* @author GLG, MHPCC +* +* @version $Revision: 1.15 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-09 22:38:53 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include +#include + +#include "psMemory.h" +#include "psRandom.h" +#include "psScalar.h" +#include "psError.h" +#include "psTrace.h" +#include "psLogMsg.h" +#include "psAssert.h" + + +psU64 p_psRandomGetSystemSeed() +{ + FILE* fd; + psU64 seedVal = 0; + time_t timeVal; + + fd = fopen("/dev/urandom","r"); + if(fd == NULL) { + // Read system clock to get seed + seedVal = (psU64)time(&timeVal); + } else { + // Read urandom to get seed + fread(&seedVal, sizeof(psU64),1,fd); + // Close file + fclose(fd); + } + + // Send log message of the system seed value used + psLogMsg(__func__,PS_LOG_INFO,"System random seed value used seed = %" PRIu64 " hex", seedVal); + + return seedVal; +} + +psRandom *psRandomAlloc(psRandomType type, + unsigned long seed) +{ + gsl_rng *r = NULL; + psRandom *myRNG = NULL; + + switch (type) { + case PS_RANDOM_TAUS: + myRNG = (psRandom*)psAlloc(sizeof(psRandom)); + r = gsl_rng_alloc(gsl_rng_taus); + myRNG->gsl = r; + if(seed == 0) { + gsl_rng_set(myRNG->gsl,p_psRandomGetSystemSeed()); + } else { + gsl_rng_set(myRNG->gsl,seed); + } + myRNG->type = type; + break; + + default: + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Unknown Random Number Generator Type")); + break; + } + + return(myRNG); +} + +void psRandomReset(psRandom *rand, + unsigned long seed) +{ + // Check null psRandom + if(rand==NULL) { + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Random variable is NULL.")); + } else { + // Check seed value to see if system seed should be used + if(seed == 0) { + gsl_rng_set(rand->gsl,p_psRandomGetSystemSeed()); + } else { + gsl_rng_set(rand->gsl, seed); + } + } +} + +double psRandomUniform(const psRandom *r) +{ + // Check null psRandom variable + if(r == NULL) { + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Random variable is NULL.")); + return(0); + } else { + return(gsl_rng_uniform(r->gsl)); + } +} + +double psRandomGaussian(const psRandom *r) +{ + // Check null psRandom variable + if(r == NULL) { + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Random variable is NULL.")); + return(0); + } else { + // XXX: What should sigma be? + return(gsl_ran_gaussian(r->gsl, 1.0)); + } +} + +double p_psRandomGaussian(const psRandom *r, double sigma) +{ + // Check null psRandom variable + if(r == NULL) { + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Random variable is NULL.")); + return(0); + } else { + return(gsl_ran_gaussian(r->gsl, sigma)); + } +} + +double psRandomPoisson(const psRandom *r, double mean) +{ + // Check null psRandom variable + if(r == NULL) { + psError(PS_ERR_UNEXPECTED_NULL, + true, + _("Random variable is NULL.")); + return(0); + } else { + return((psF64) gsl_ran_poisson(r->gsl, mean)); + } +} + Index: /branches/rel-1-1/psLib/src/math/psRandom.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psRandom.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRandom.h (revision 12167) @@ -0,0 +1,108 @@ +/* @file psRandom.h + * @brief Random Number Generators + * + * This file will hold the prototypes for procedures which allocate, free, + * and evaluate random number Generators. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_RANDOM_H +#define PS_RANDOM_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include +#include +#include +#include + +#include "psVector.h" +#include "psScalar.h" +#include +#include + +/** Enumeration containing a flag for psRandom types. */ +typedef enum { + PS_RANDOM_TAUS ///< A maximally equidistributed combined Tausworthe generator. +} psRandomType; + +/** Data structure for psRandom. + * Contains information on the psRandom type and GNU Scientific Library random number generator. + */ +typedef struct +{ + psRandomType type; ///< The type of RNG + gsl_rng *gsl; ///< The RNG itself +} +psRandom; + +psU64 p_psRandomGetSystemSeed(); + +/** Allocates a psRandom struct. + * + * @return psRandom*: A new psRandom structure. + */ +psRandom *psRandomAlloc( + psRandomType type, ///< The type of RNG + unsigned long seed ///< Known value with which to seed the RNG +); + +/** Resets an existing psRandom struct. + * + * @return void + */ +void psRandomReset( + psRandom *rand, ///< Existing psRandom struct to reset + unsigned long seed ///< Known value with which to seed the RNG +); + +/** Random number generator based on a uniform distribution on [0,1). + * Uses gsl_rng_uniform. + * + * @return double: Random number. + */ +double psRandomUniform( + const psRandom *r ///< psRandom struct for RNG +); + +/** Random number generator based on a Gaussian deviate, N(0,1). + * Uses gsl_ran_gaussian. + * + * @return double: Random number. + */ +double psRandomGaussian( + const psRandom *r ///< psRandom struct for RNG +); + +/** Random number generator based on a Gaussian deviate, N(0,1). + * Uses gsl_ran_gaussian. + * + * XXX: I created this since the above psLib spec for p_psRandomGaussian + * had no argument for sigma. Verify that with IfA. + * + * @return double: Random number. + */ +double p_psRandomGaussian( + const psRandom *r, ///< psRandom struct for RNG + double sigma +); + +/** Random number generator based on a Poisson distribution with the given mean. + * Uses gsl_ran_poisson. + * + * @return double: Random number. + */ +double psRandomPoisson( + const psRandom *r, ///< psRandom struct for RNG + double mean ///< Mean value +); + +/// @} +#endif // #ifndef PS_RANDOM_H Index: /branches/rel-1-1/psLib/src/math/psRegion.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psRegion.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRegion.c (revision 12167) @@ -0,0 +1,122 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include "psMemory.h" +#include "psError.h" +#include "psAssert.h" +#include "psRegion.h" + +static void regionFree(psRegion *region) +{ + // There are non dynamic allocated items +} + +psRegion *psRegionAlloc(float x0, + float x1, + float y0, + float y1) +{ + psRegion *region = psAlloc(sizeof(psRegion)); // New region, to be returned + psMemSetDeallocator(region, (psFreeFunc)regionFree); + // No complex structures, so no special deallocator + *region = psRegionSet(x0, x1, y0, y1); + return region; +} + +psRegion psRegionSet(float x0, + float x1, + float y0, + float y1) +{ + psRegion out; + + out.x0 = x0; + out.y0 = y0; + out.x1 = x1; + out.y1 = y1; + + return out; +} + +psRegion psRegionFromString(const char* region) +{ + psS32 col0; + psS32 col1; + psS32 row0; + psS32 row1; + + // section should be of the form '[col0:col1,row0:row1]' + if (region == NULL) { + return psRegionSet(0,0,0,0); + } + + if (sscanf(region,"[%d:%d,%d:%d]",&col0,&col1,&row0,&row1) < 4) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified subsection string, '%s', can not be parsed. Must be in the form '[x1:x2,y1:y2]'."), + region); + return psRegionSet(NAN,NAN,NAN,NAN); + } + + // [0:0,0:0] is complete image region + if ((col0 == 0) && (col1 == 0) && (row0 == 0) && (row1 == 0)) { + return psRegionSet(0,0,0,0); + } + + if ((col1 > 0) && (col0 > col1)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid. Ranges must be incremental."), + col0,col1,row0,row1); + return psRegionSet(NAN,NAN,NAN,NAN); + } + + if ((row1 > 0) && (row0 > row1)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified subset range, [%d:%d,%d:%d], is invalid. Ranges must be incremental."), + col0,col1,row0,row1); + return psRegionSet(NAN,NAN,NAN,NAN); + } + + return psRegionSet(col0-1,col1,row0-1,row1); +} + +psString psRegionToString(const psRegion region) +{ + char *result = NULL; + + // [0:0,0:0] is complete image region + if ((region.x0 == 0) && (region.x1 == 0) && (region.y0 == 0) && (region.y1 == 0)) { + psStringAppend(&result, "[0:0,0:0]"); + } else { + psStringAppend(&result, "[%g:%g,%g:%g]", + region.x0+1, region.x1, + region.y0+1, region.y1); + } + return result; +} + +// define a square region centered on the given coordinate +psRegion psRegionForSquare(double x, + double y, + double radius) +{ + psRegion region; + region = psRegionSet (x - radius, x + radius + 1, + y - radius, y + radius + 1); + return (region); +} + +bool inline psRegionIsNaN(psRegion region) +{ + return isnan(region.x0) || isnan(region.x1) || isnan(region.y0) || isnan(region.y1); +} + +bool psMemCheckRegion(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)regionFree ); +} + + Index: /branches/rel-1-1/psLib/src/math/psRegion.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psRegion.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRegion.h (revision 12167) @@ -0,0 +1,103 @@ +/* @file psRegion.h + * @brief image regions and related functions + * + * $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_REGION_H +#define PS_REGION_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psString.h" + +/** Basic image region structure. + * + * Struct for specifying a rectangular area in an image. + * + */ +typedef struct +{ + float x0; ///< the first column of the region. + float x1; ///< the last column of the region. + float y0; ///< the first row of the region. + float y1; ///< the last row of the region. +} +psRegion; + +/** Create a pointer to a psRegion, with associated psMemBlock. + * + * @return psRegion* : a new psRegion. + */ +psRegion *psRegionAlloc( + float x0, ///< the first column of the region. + float x1, ///< the last column of the region + 1. + float y0, ///< the first row of the region. + float y1 ///< the last row of the region + 1. +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psRegion structure, false otherwise. + */ +bool psMemCheckRegion( + psPtr ptr ///< the pointer whose type to check +); + +/** Create a psRegion with the specified attributes. + * + * @return psRegion : a corresponding psRegion. + */ +psRegion psRegionSet( + float x0, ///< the first column of the region. + float x1, ///< the last column of the region + 1. + float y0, ///< the first row of the region. + float y1 ///< the last row of the region + 1. +); + +/** Create a psRegion with the attribute values given as a string. + * + * Create a psRegion with the attribute values given as a string. The format + * shall be of the standard IRAF form '[x0:x1,y0:y1]' + * + * @return psRegion: A new psRegion struct, or NULL is not successful. + */ +psRegion psRegionFromString( + const char* region ///< image rectangular region in the form '[x0:x1,y0:y1]' +); + +/** Create a string of the standard IRAF form '[x0:x1,y0:y1]' from a psRegion. + * + * @return psString: A new string representing the psRegion as text, or NULL + * is not successful. + */ +psString psRegionToString( + const psRegion region ///< the psRegion to convert to a string +); + +/** Defines a region corresponding to the square with center at coordinate x,y + * and with coderadius. The width of the square is 2radius + 1. + * + * @return psRegion: the newly defined psRegion. + */ +psRegion psRegionForSquare( + double x, ///< x coordinate at square-center + double y, ///< y coordinate at square-center + double radius ///< radius of square +); + +/** Test if any element of the region is NaN + * + * @return bool: True if an element is NaN, otherwise false. + */ +bool psRegionIsNaN( + psRegion region ///< Region to check +); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psRegionForImage.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psRegionForImage.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRegionForImage.c (revision 12167) @@ -0,0 +1,65 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include "psError.h" +#include "psRegion.h" +#include "psImage.h" +#include "psRegionForImage.h" + +// set actual region based on image parameters: +// - compensate for negative upper limits +// - force range to be on this image +// - saturate on upper and lower limits of image +// - flip x0,x1 if x0>x1 +// - flip y0,y1 if y0>y1 +// psRegion in refers to coordinates in the *parent* image +psRegion psRegionForImage(psImage *image, + psRegion in) +{ + + // if (image == NULL) { + // return in; + // } + PS_ASSERT_IMAGE_NON_NULL(image, in); + //if the region is [0,0,0,0], the whole image (or subimage) is to be included. + if (in.x0 == 0 && in.x1 == 0 && in.y0 == 0 && in.y1 == 0) { + in.x0 = image->col0; + in.x1 = image->col0 + image->numCols; + in.y0 = image->row0; + in.y1 = image->row0 + image->numRows; + return (in); + } + + // convert non-positive upper-limits + // XXX note that the upper limit in these cases is defined relative to the subimage + // also note that truncation limits to the valid subimage pixels + in.x1 = (in.x1 <= 0) ? (image->col0 + image->numCols + in.x1) : in.x1; + in.y1 = (in.y1 <= 0) ? (image->row0 + image->numRows + in.y1) : in.y1; + + // force the upper-limits to be on the image + in.x1 = PS_MIN(image->col0 + image->numCols, in.x1); + in.y1 = PS_MIN(image->row0 + image->numRows, in.y1); + + // force the lower-limits to be on the image + in.x0 = PS_MAX(image->col0, in.x0); + in.y0 = PS_MAX(image->row0, in.y0); + in.x0 = PS_MIN(image->col0 + image->numCols, in.x0); + in.y0 = PS_MIN(image->row0 + image->numRows, in.y0); + + // flip start and end if out of order + if (in.x0 > in.x1) { + psError (PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid region in psRegionForImage. x0 > x1. Values have been swapped.\n"); + PS_SWAP (in.x0, in.x1); + } + if (in.y0 > in.y1) { + psError (PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid region in psRegionForImage. y0 > y1. Values have been swapped.\n"); + PS_SWAP (in.y0, in.y1); + } + + return (in); +} + Index: /branches/rel-1-1/psLib/src/math/psRegionForImage.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psRegionForImage.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psRegionForImage.h (revision 12167) @@ -0,0 +1,35 @@ +/* @file psRegionForImage.h + * @brief regions definitions based on images + * + * $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_REGION_FOR_IMAGE_H +#define PS_REGION_FOR_IMAGE_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/** Sets an actual region based on image parameters. + * + * An image region defined with negative upper limits may be rationalized for the bounds of a + * specific image with psRegionForImage. The output of this function is a region with negative + * upper limits replaced by their corrected value appropriate to the given image. In addition, + * the lower and upper limits are foced to lie within the bounds of the image. If the lower- + * limit coordinates are lewss than the lower bound of the image, they are limited to the lower + * bound of the image. Conversely, if the upper-limit coordinates are greater than the upper + * bound of the image, they are truncated to define only valid pixels. If the lower-limit + * coordinates are greater than the upper bounds of the image, or the upper-limit coordinates + * are less than the lower bounds of the image, the coordinates should saturate on those limits. + * + * @return psRegion: A region with negative upper limits replaced by the corrected + */ +psRegion psRegionForImage( + psImage *image, ///< the image for which the region is to be set + psRegion in ///< the image region limits +); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/math/psSparse.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psSparse.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psSparse.c (revision 12167) @@ -0,0 +1,470 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psVector.h" +#include "psAssert.h" +#include "psConstants.h" +#include "psImageStructManip.h" +#include "psImage.h" +#include "psMatrix.h" +#include "psSparse.h" +#include "psAbort.h" + +#define BUFFER 100 // Size to increment at each go + +static void sparseFree(psSparse *sparse) +{ + if (!sparse) { + return; + } + psFree(sparse->Aij); + psFree(sparse->Bfj); + psFree(sparse->Qii); + psFree(sparse->Si); + psFree(sparse->Sj); + return; +} + +// allocate a sparse matrix container for Nrows, with Nelem slots allocated +psSparse *psSparseAlloc(int Nrows, int Nelem) +{ + psSparse *sparse = (psSparse *)psAlloc(sizeof(psSparse)); + psMemSetDeallocator(sparse, (psFreeFunc)sparseFree); + + sparse->Aij = psVectorAllocEmpty(Nelem, PS_DATA_F32); + sparse->Si = psVectorAllocEmpty(Nelem, PS_DATA_S32); + sparse->Sj = psVectorAllocEmpty(Nelem, PS_DATA_S32); + + sparse->Nelem = 0; + + sparse->Bfj = psVectorAlloc(Nrows, PS_DATA_F32); + sparse->Qii = psVectorAlloc(Nrows, PS_DATA_F32); + + sparse->Nrows = Nrows; + + return sparse; +} + +// user should only add elements above the diagonal, but we don't check this +bool psSparseMatrixElement(psSparse *sparse, int i, int j, float value) +{ + PS_ASSERT_PTR_NON_NULL(sparse, false); + PS_ASSERT_INT_NONNEGATIVE(i, false); + PS_ASSERT_INT_NONNEGATIVE(j, false); + + // EAM : this is now a fatal error + if (i < j) { + // psError(PS_ERR_UNKNOWN, true, "i=%d, j=%d refers to a sub-diagonal element. not allowed!"); + psAbort("i=%d, j=%d refers to a sub-diagonal element. not allowed!", i, j); + return false; + } + + if (i == j) { + // add to the diagonal + sparse->Qii->data.F32[i] = value; + + // check vectors lengths and extend if needed + if (sparse->Nelem >= sparse->Aij->nalloc) { + psVectorRealloc(sparse->Aij, sparse->Aij->nalloc + BUFFER); + psVectorRealloc(sparse->Si, sparse->Si->nalloc + BUFFER); + psVectorRealloc(sparse->Sj, sparse->Sj->nalloc + BUFFER); + } + + int k = sparse->Nelem; // Index at which to add + sparse->Aij->data.F32[k] = value; + sparse->Si->data.S32[k] = i; + sparse->Sj->data.S32[k] = j; + + sparse->Nelem ++; + sparse->Aij->n ++; + sparse->Si->n ++; + sparse->Sj->n ++; + } else { + // check vectors lengths and extend if needed + if (sparse->Nelem >= sparse->Aij->nalloc - 1) { + psVectorRealloc(sparse->Aij, sparse->Aij->nalloc + BUFFER); + psVectorRealloc(sparse->Si, sparse->Si->nalloc + BUFFER); + psVectorRealloc(sparse->Sj, sparse->Sj->nalloc + BUFFER); + } + + int k = sparse->Nelem; // Index at which to add + sparse->Aij->data.F32[k] = value; + sparse->Si->data.S32[k] = i; + sparse->Sj->data.S32[k] = j; + k++; + + sparse->Aij->data.F32[k] = value; + sparse->Si->data.S32[k] = j; + sparse->Sj->data.S32[k] = i; + + sparse->Nelem += 2; + sparse->Aij->n += 2; + sparse->Si->n += 2; + sparse->Sj->n += 2; + } + + return true; +} + +void inline psSparseVectorElement(psSparse *sparse, int i, float value) +{ + + sparse->Bfj->data.F32[i] = value; + return; +} + +// multiply A * x +psVector *psSparseMatrixTimesVector(psVector *output, const psSparse *matrix, const psVector *vector) +{ + PS_ASSERT_PTR_NON_NULL(matrix, NULL); + PS_ASSERT_VECTOR_NON_NULL(vector, NULL); + + output = psVectorRecycle(output, vector->n, PS_TYPE_F32); + + int Nelem = 0; // Number of elements + for (int j = 0; j < vector->n; j++) { + double F = 0; // Running total + while (matrix->Sj->data.S32[Nelem] == j) { + int i = matrix->Si->data.S32[Nelem]; + F += vector->data.F32[i] * matrix->Aij->data.F32[Nelem]; + Nelem++; + } + output->data.F32[j] = F; + } + return output; +} + +// solve Ax = B +psVector *psSparseSolve(psVector *output, psSparseConstraint constraint, const psSparse *sparse, int Niter) +{ + PS_ASSERT_PTR_NON_NULL(sparse, NULL); + PS_ASSERT_INT_POSITIVE(Niter, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(constraint.paramDelta, 0.0, NULL); + + // Dereference some vectors + psVector *Qii = sparse->Qii; + psVector *Bfj = sparse->Bfj; + + // initial guess is B / Qii + output = psVectorCopy(output, Bfj, PS_DATA_F32); + for (int i = 0; i < output->n; i++) { + output->data.F32[i] /= Qii->data.F32[i]; + } + + // temporary storage for intermediate results + psVector *dQ = psVectorAlloc(output->n, PS_DATA_F32); + + for (int j = 0; j < Niter; j++) { + dQ = psSparseMatrixTimesVector(dQ, sparse, output); + for (int i = 0; i < dQ->n; i++) { + psF32 dG = (dQ->data.F32[i] - Bfj->data.F32[i]) / Qii->data.F32[i]; + if (fabs (dG) > constraint.paramDelta) { + if (dG > 0) { + dG = +constraint.paramDelta; + } else { + dG = -constraint.paramDelta; + } + } + output->data.F32[i] -= dG; + output->data.F32[i] = PS_MAX(output->data.F32[i], constraint.paramMin); + output->data.F32[i] = PS_MIN(output->data.F32[i], constraint.paramMax); + } + } + psFree(dQ); + + return output; +} + +bool psSparseResort(psSparse *sparse) +{ + int Nelem = sparse->Nelem; + + psVector *index = psVectorSortIndex(NULL, sparse->Sj); // Index key for sorting + if (!index) { + psError(PS_ERR_UNKNOWN, false, "Unable to sort sparse matrix.\n"); + return false; + } + psVector *Aij = sparse->Aij; + psVector *Si = sparse->Si; + psVector *Sj = sparse->Sj; + + // allocate new temporary vectors + psVector *tAij = psVectorAlloc(Nelem, PS_DATA_F32); + psVector *tSi = psVectorAlloc(Nelem, PS_DATA_S32); + psVector *tSj = psVectorAlloc(Nelem, PS_DATA_S32); + + for (int i = 0; i < Nelem; i++) { + int j = index->data.U32[i]; + tAij->data.F32[i] = Aij->data.F32[j]; + tSi->data.S32[i] = Si->data.S32[j]; + tSj->data.S32[i] = Sj->data.S32[j]; + } + psFree(index); + psFree(Aij); + psFree(Si); + psFree(Sj); + + sparse->Aij = tAij; + sparse->Si = tSi; + sparse->Sj = tSj; + + return true; +} + +/*** psSparseBorder Functions : these are used to solve a matrix equation of the form: + A x = f where A is partitioned into: + A = |S B| where Q is a low-rank square matrix (N<20) + |B Q| and B is a rectangular band (technically this is B and B^T) + and S is a sparse matrix. +*/ + +static void psSparseBorderFree(psSparseBorder *border) +{ + if (!border) { + return; + } + psFree(border->sparse); + psFree(border->Bij); + psFree(border->Tjj); + psFree(border->Gj); + return; +} + +// allocate a sparse matrix border container for a system with Nrows + Nborder elements +// the supplied psSparse has a size of Nrows +psSparseBorder *psSparseBorderAlloc(psSparse *sparse, int Nborder) +{ + psSparseBorder *border = (psSparseBorder *)psAlloc(sizeof(psSparseBorder)); + psMemSetDeallocator(border, (psFreeFunc) psSparseBorderFree); + + border->sparse = psMemIncrRefCounter (sparse); // XXX increment ref counter or not? + + int Nrows = sparse->Nrows; + border->Nrows = Nrows; + border->Nborder = Nborder; + + border->Bij = psImageAlloc(Nrows, Nborder, PS_DATA_F32); + psImageInit (border->Bij, 0.0); + + border->Tjj = psImageAlloc(Nborder, Nborder, PS_DATA_F32); + psImageInit (border->Tjj, 0.0); + + border->Gj = psVectorAlloc(Nborder, PS_DATA_F32); + psVectorInit (border->Gj, 0.0); + + return border; +} + +// add elements to border->Tjj +bool psSparseBorderElementT(psSparseBorder *border, int i, int j, float value) +{ + PS_ASSERT_PTR_NON_NULL(border, false); + PS_ASSERT_PTR_NON_NULL(border->Tjj, false); + PS_ASSERT_INT_NONNEGATIVE(i, false); + PS_ASSERT_INT_NONNEGATIVE(j, false); + + // check i,j against border->Tjj->nX,nY + border->Tjj->data.F32[j][i] = value; + return true; +} + +// add elements to border->Bij +bool psSparseBorderElementB(psSparseBorder *border, int i, int j, float value) +{ + PS_ASSERT_PTR_NON_NULL(border, false); + PS_ASSERT_PTR_NON_NULL(border->Bij, false); + PS_ASSERT_INT_NONNEGATIVE(i, false); + PS_ASSERT_INT_NONNEGATIVE(j, false); + + border->Bij->data.F32[j][i] = value; + return true; +} + +// add elements to border->Gj +bool psSparseBorderElementG(psSparseBorder *border, int i, float value) +{ + PS_ASSERT_PTR_NON_NULL(border, false); + PS_ASSERT_PTR_NON_NULL(border->Gj, false); + PS_ASSERT_INT_NONNEGATIVE(i, false); + + border->Gj->data.F32[i] = value; + return true; +} + +// perform the operation dG = B*x +psVector *psSparseBorderLowerProduct (psVector *dG, psSparseBorder *border, psVector *xVec) +{ + // XXX assert xVec->n == border->Nrows + + int Nborder = border->Nborder; + int Nrows = border->Nrows; + + dG = psVectorRecycle (dG, Nborder, PS_TYPE_F32); + psVectorInit (dG, 0.0); + + for (int j = 0; j < Nborder; j++) { + double value = 0; + for (int i = 0; i < Nrows; i++) { + value += border->Bij->data.F32[j][i] * xVec->data.F32[i]; + } + dG->data.F32[j] = value; + } + + return dG; +} + +// perform the operation dF = B^T*y +psVector *psSparseBorderUpperProduct (psVector *dF, psSparseBorder *border, psVector *yVec) +{ + // XXX assert yVec->n == border->Nborder + + int Nborder = border->Nborder; + int Nrows = border->Nrows; + + dF = psVectorRecycle (dF, Nrows, PS_TYPE_F32); + psVectorInit (dF, 0.0); + + for (int i = 0; i < Nrows; i++) { + double value = 0; + for (int j = 0; j < Nborder; j++) { + value += border->Bij->data.F32[j][i] * yVec->data.F32[j]; + } + dF->data.F32[i] = value; + } + + return dF; +} + +// perform the operation dG = T*y +psVector *psSparseBorderSquareProduct (psVector *dG, psSparseBorder *border, psVector *yVec) +{ + // XXX assert yVec->n == border->Nborder + + int Nborder = border->Nborder; + + dG = psVectorRecycle (dG, Nborder, PS_TYPE_F32); + psVectorInit (dG, 0.0); + + for (int i = 0; i < Nborder; i++) { + double value = 0; + for (int j = 0; j < Nborder; j++) { + value += border->Tjj->data.F32[i][j] * yVec->data.F32[j]; + } + dG->data.F32[i] = value; + } + + return dG; +} + +// perform the operation dF = B^T*y +bool psSparseBorderUpperDelta (psSparseBorder *border, psVector *dF) +{ + + int Nrows = border->Nrows; + + for (int i = 0; i < Nrows; i++) { + border->sparse->Bfj->data.F32[i] -= dF->data.F32[i]; + } + + return true; +} + +// perform the operation dF = B^T*y +psVector *psSparseBorderLowerDelta (psVector *Go, psSparseBorder *border, psVector *dG) +{ + int Nborder = border->Nborder; + + Go = psVectorRecycle (Go, Nborder, PS_TYPE_F64); + psVectorInit (Go, 0.0); + + for (int i = 0; i < Nborder; i++) { + Go->data.F64[i] = border->Gj->data.F32[i] - dG->data.F32[i]; + } + return Go; +} + +// multiply A*x = b (where x is (x,y) and b is (f,g)) +bool psSparseBorderMultiply (psVector **fIn, psVector **gIn, psSparseBorder *border, psVector *xVec, psVector *yVec) +{ + psVector *fVec = *fIn; + fVec = psSparseMatrixTimesVector (fVec, border->sparse, xVec); + psVector *dF = psSparseBorderUpperProduct (NULL, border, yVec); + for (int i = 0; i < border->Nrows; i++) { + fVec->data.F32[i] += dF->data.F32[i]; + } + psFree (dF); + *fIn = fVec; + + psVector *gVec = *gIn; + gVec = psSparseBorderSquareProduct (gVec, border, yVec); + psVector *dG = psSparseBorderLowerProduct (NULL, border, xVec); + for (int i = 0; i < border->Nborder; i++) { + gVec->data.F32[i] += dG->data.F32[i]; + } + psFree (dG); + *gIn = gVec; + + return true; +} + +bool psSparseBorderSolve(psVector **xFit, psVector **yFit, psSparseConstraint constraint, psSparseBorder *border, int Niter) +{ + // PS_ASSERT_PTR_NON_NULL(sparse, NULL); + // PS_ASSERT_INT_POSITIVE(Niter, NULL); + // PS_ASSERT_FLOAT_LARGER_THAN(constraint.paramDelta, 0.0, NULL); + + psVector *xVec = *xFit; + psVector *yVec = *yFit; + + // save the original value of Bfj, alloc other temp vectors + // XXX be careful about TYPE requirements of support functions... + psVector *Fo = psVectorCopy (NULL, border->sparse->Bfj, PS_TYPE_F32); + psVector *dF = psVectorAlloc (border->Nrows, PS_TYPE_F32); + psVector *Go = psVectorAlloc (border->Nborder, PS_TYPE_F64); + psVector *dG = psVectorAlloc (border->Nborder, PS_TYPE_F32); + psImage *square = psImageAlloc (border->Nborder, border->Nborder, PS_TYPE_F64); + + for (int j = 0; j < Niter; j++) { + + // solve Sx = f + xVec = psSparseSolve(xVec, constraint, border->sparse, Niter); + + dG = psSparseBorderLowerProduct (dG, border, xVec); + + // XXX i have an error here: i'm not + // I need to reset to the original value of g before subtracting + // XXX this function returns an psVector:F64 so we can us it in GJ + Go = psSparseBorderLowerDelta (Go, border, dG); + + // use gauss-jordan to solve the lower square + // square is modified by GJSolve, so re-copy each time + square = psImageCopy (square, border->Tjj, PS_TYPE_F64); + psMatrixGJSolve (square, Go); + yVec = psVectorCopy (yVec, Go, PS_TYPE_F32); + + // calculate the delta relative to the original Bfj: + border->sparse->Bfj = psVectorCopy (border->sparse->Bfj, Fo, PS_TYPE_F32); + dF = psSparseBorderUpperProduct (dF, border, yVec); + psSparseBorderUpperDelta (border, dF); + } + + psFree (dG); + psFree (Go); + psFree (dF); + psFree (Fo); + psFree (square); + + *xFit = xVec; + *yFit = yVec; + return true; +} Index: /branches/rel-1-1/psLib/src/math/psSparse.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psSparse.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psSparse.h (revision 12167) @@ -0,0 +1,110 @@ +/* @file psSparse.h + * @brief functions to manipulate sparse matrices equations + * + * $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 IfA, University of Hawaii + */ + +#ifndef PS_SPARSE_H +#define PS_SPARSE_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +// constraints to limit the range of the matrix equation solution +typedef struct +{ + double paramDelta; + double paramMin; + double paramMax; +} +psSparseConstraint; + +// A sparse matrix equation: A x = Bf +typedef struct +{ + psVector *Aij; // Aij contains the populated elements of the matrix + psVector *Bfj; // Bfj contains the elements of the vector Bf + psVector *Qii; // Qii contains the diagonal elements of Aij + psVector *Si; // Si contains the i-index values of Aij + psVector *Sj; // Sj contains the j-index values of Aij + int Nelem; // Number of elements + int Nrows; // Number of rows +} +psSparse; + +// The border elements of a sparse matrix equation: +// A = |S B'| where T is a low-rank square matrix (N<20) +// |B T | and B is a rectangular band (B' is B transpose) +typedef struct +{ + psSparse *sparse; // corresponding sparse matrix equation + psImage *Bij; // Bij contains the border band (Nrow x Nborder) + psImage *Tjj; // Tjj contains the square border matrix (Nborder x Nborder) + psVector *Gj; // XXX lower dependent var drop?? + int Nrows; // Number of rows (long dimension of Bij, 0-j) + int Nborder; // Number of border elements (size of Qii) +} +psSparseBorder; + +// allocate a sparse matrix structure +psSparse *psSparseAlloc(int Nrows, int Nelem); + +// add a new matrix element +// user should only add elements above the diagonal +bool psSparseMatrixElement(psSparse *sparse, // Matrix to which to add + int i, int j, // Matrix indices at which to add + float value // Value to add + ); + +// define a new sparse matrix equation vector element +void psSparseVectorElement(psSparse *sparse, // Matrix to which to add + int i, // Index to add + float value // Value to add + ); + +// perform the operation matrix * vector on a sparse matrix and a vector +psVector *psSparseMatrixTimesVector(psVector *output, // Output vector, or NULL + const psSparse *matrix, // Sparse matrix + const psVector *vector // Corresponding vector + ); + +// re-sort a sparse matrix to have all elements in index order rather than insertion order +// call this before solving, but after populating matrix and vector +bool psSparseResort(psSparse *sparse // Matrix to re-sort + ); + +// solve the equation A x = Bf for the value of x +// a good starting guess is the vector Bf +psVector *psSparseSolve(psVector *output,// The output vector, or NULL + psSparseConstraint constraint, // Constraint to limit the range of the solution + const psSparse *sparse, // Sparse matrix + int Niter // Number of iterations + ); + +// allocate a sparse matrix structure +psSparseBorder *psSparseBorderAlloc(psSparse *sparse, int Nborder); + +bool psSparseBorderElementT(psSparseBorder *border, int i, int j, float value); + +bool psSparseBorderElementB(psSparseBorder *border, int i, int j, float value); + +bool psSparseBorderElementG(psSparseBorder *border, int i, float value); + +psVector *psSparseBorderLowerProduct (psVector *dG, psSparseBorder *border, psVector *xVec); + +psVector *psSparseBorderUpperProduct (psVector *dF, psSparseBorder *border, psVector *yVec); + +psVector *psSparseBorderSquareProduct (psVector *dG, psSparseBorder *border, psVector *yVec); + +bool psSparseBorderUpperDelta (psSparseBorder *border, psVector *dF); + +psVector *psSparseBorderLowerDelta (psVector *Go, psSparseBorder *border, psVector *dG); + +bool psSparseBorderMultiply (psVector **fIn, psVector **gIn, psSparseBorder *border, psVector *xVec, psVector *yVec); + +bool psSparseBorderSolve(psVector **xFit, psVector **yFit, psSparseConstraint constraint, psSparseBorder *border, int Niter); + +/// @} +#endif /* PS_SPARSE_H */ Index: /branches/rel-1-1/psLib/src/math/psSpline.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psSpline.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psSpline.c (revision 12167) @@ -0,0 +1,428 @@ +/** @file psSpline.c +* +* @brief Contains basic spline allocation, deallocation, fitting, +* and evaluation routines. +* +* This file contains the routines that allocate, free, and evaluate splines. +* +* @version $Revision: 1.157 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-09 22:38:53 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include +#include +#include +#include + +#include "psMemory.h" +#include "psVector.h" +#include "psScalar.h" +#include "psTrace.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psPolynomial.h" +#include "psSpline.h" +#include "psAssert.h" + +#include "psMathUtils.h" + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +static void spline1DFree(psSpline1D *tmpSpline) +{ + if (tmpSpline == NULL) { + return; + } + + if (tmpSpline->spline != NULL) { + for (psS32 i=0;in;i++) { + psFree((tmpSpline->spline)[i]); + } + psFree(tmpSpline->spline); + } + + if (tmpSpline->p_psDeriv2 != NULL) { + psFree(tmpSpline->p_psDeriv2); + } + + psFree(tmpSpline->knots); + + return; +} + + +static void PS_POLY1D_PRINT( + psPolynomial1D *poly) +{ + printf("-------------- PS_POLY1D_PRINT() --------------\n"); + printf("poly->nX is %d\n", poly->nX); + for (psS32 i = 0 ; i < (1 + poly->nX) ; i++) { + printf("poly->coeff[%d] is %f\n", i, poly->coeff[i]); + } +} + +static void PS_PRINT_SPLINE2(psSpline1D *mySpline) +{ + printf("-------------- PS_PRINT_SPLINE2() --------------\n"); + printf("mySpline->n is %d\n", mySpline->n); + for (psS32 i = 0 ; i < mySpline->n ; i++) { + PS_POLY1D_PRINT(mySpline->spline[i]); + } + PS_VECTOR_PRINT_F32(mySpline->knots); +} + +/***************************************************************************** +CalculateSecondDerivs(): Given a set of x/y vectors corresponding to a +tabulated function at n points, this routine calculates the second +derivatives of the interpolating cubic splines at those n points. + +The first and second derivatives at the endpoints were previously undefined in +the SDR. From bugzilla #???, they are required to be 0.0, implementing natural +splines. + +Endpoints are defined by + PS_LEFT_SPLINE_DERIV + PS_RIGHT_SPLINE_DERIV + +This routine assumes that vectors x and y are of the appropriate types/sizes +(F32). + +XXX: use recycled vectors for internal data. +XXX: do an F64 version? + *****************************************************************************/ +#define PS_LEFT_SPLINE_DERIV 0.0 +#define PS_RIGHT_SPLINE_DERIV 0.0 +static psF32 *calculateSecondDerivs( + const psVector* x, ///< Ordinates + const psVector* y) ///< Coordinates +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + if (psTraceGetLevel("psLib.math") >= 6) { + p_psVectorPrint(1, (psVector *) x, "x"); + p_psVectorPrint(1, (psVector *) y, "y"); + } + psS32 n = y->n; + psF32 *u = (psF32 *) psAlloc(n * sizeof(psF32)); + psF32 *derivs2 = (psF32 *) psAlloc(n * sizeof(psF32)); + psF32 *X = (psF32 *) & (x->data.F32[0]); + psF32 *Y = (psF32 *) & (y->data.F32[0]); + // + // The second derivatives at the endpoints, undefined in the SDR, + // are set in psAssert.h: PS_LEFT_SPLINE_DERIV, PS_RIGHT_SPLINE_DERIV. + // + derivs2[0] = -0.5; + u[0]= (3.0/(X[1]-X[0])) * ((Y[1]-Y[0])/(X[1]-X[0]) - PS_LEFT_SPLINE_DERIV); + + for (psS32 i=1;i<=(n-2);i++) { + psF32 sig = (X[i] - X[i-1]) / (X[i+1] - X[i-1]); + psF32 p = sig * derivs2[i-1] + 2.0; + derivs2[i] = (sig - 1.0) / p; + u[i] = ((Y[i+1] - Y[i])/(X[i+1]-X[i])) - ((Y[i]-Y[i-1])/(X[i]-X[i-1])); + u[i] = ((6.0 * u[i] / (X[i+1] - X[i-1])) - (sig * u[i-1])) / p; + + psTrace("psLib.math", 6, "X[%d] is %f\n", i, X[i]); + psTrace("psLib.math", 6, "Y[%d] is %f\n", i, Y[i]); + psTrace("psLib.math", 6, "u[%d] is %f\n", i, u[i]); + } + + psF32 qn = 0.5; + u[n-1] = (3.0/(X[n-1]-X[n-2])) * (PS_RIGHT_SPLINE_DERIV - (Y[n-1]-Y[n-2])/(X[n-1]-X[n-2])); + derivs2[n-1] = (u[n-1] - (qn * u[n-2])) / ((qn * derivs2[n-2]) + 1.0); + + for (psS32 k=(n-2);k>=0;k--) { + derivs2[k] = derivs2[k] * derivs2[k+1] + u[k]; + psTrace("psLib.math", 6, "derivs2[%d] is %f\n", k, derivs2[k]); + } + psFree(u); + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return(derivs2); +} + + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +bool psMemCheckSpline1D(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)spline1DFree ); +} + +psSpline1D *psSpline1DAlloc() +{ + psSpline1D *tmpSpline = (psSpline1D *) psAlloc(sizeof(psSpline1D)); + tmpSpline->n = 0; + tmpSpline->spline = NULL; + tmpSpline->knots = NULL; + tmpSpline->p_psDeriv2 = NULL; + psMemSetDeallocator(tmpSpline, (psFreeFunc) spline1DFree); + + return(tmpSpline); +} + +/***************************************************************************** +psVectorFitSpline1D(): given a set of x/y vectors, this routine generates the +linear or cublic splines which satisfy those data points. + +The formula for calculating the spline polynomials is derived from Numerical +Recipes in C. The basic idea is that the polynomial is + (1) y = (A * y[0]) + + (2) (B * y[1]) + + (3) ((((A*A*A)-A) * mySpline->p_psDeriv2[0]) * H^2)/6.0 + + (4) ((((B*B*B)-B) * mySpline->p_psDeriv2[1]) * H^2)/6.0 +Where: + H = x[1]-x[0] + A = (x[1]-x)/H + B = (x-x[0])/H +The bulk of the code in this routine is the expansion of the above equation +into a polynomial in terms of x, and then saving the coefficients of the +powers of x in the spline polynomials. This gets pretty complicated. + +XXX: What types must be supported? + *****************************************************************************/ +psSpline1D *psVectorFitSpline1D( + const psVector* x, ///< Ordinates. + const psVector* y) ///< Coordinates. +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_VECTOR_NON_NULL(y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(y, NULL); + PS_ASSERT_LONG_LARGER_THAN_OR_EQUAL(y->n, (long)2, NULL); + psS32 numSplines = (y->n)-1; + psTrace("psLib.math", 5, "numSplines is %d\n", numSplines); + + // + // Create the psSpline1D struct. + // + psSpline1D *spline = psSpline1DAlloc(); + spline->n = numSplines; + spline->spline = (psPolynomial1D **) psAlloc(numSplines * sizeof(psPolynomial1D *)); + for (psS32 i=0;ispline[i] = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 3); + } + + // + // The following code ensures that xPtr and yPtr points to a psF32 psVector. + // + // XXX: Use the vector copy and create routines here: + // + + spline->knots = psVectorAlloc(y->n, PS_TYPE_F32); + if (x != NULL) { + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(x, y, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + if (x->type.type == PS_TYPE_F32) { + for (psS32 i = 0 ; i < x->n ; i++) { + spline->knots->data.F32[i] = x->data.F32[i]; + } + } else if (x->type.type == PS_TYPE_F64) { + for (psS32 i = 0 ; i < x->n ; i++) { + spline->knots->data.F32[i] = (psF32) x->data.F64[i]; + } + } + } else { + for (psS32 i = 0 ; i < y->n ; i++) { + spline->knots->data.F32[i] = (psF32) i; + } + } + psVector *xPtr = spline->knots; + + psVector *yPtr = NULL; + // Convert y to F32 if necessary. + if (PS_TYPE_F64 == y->type.type) { + yPtr = psVectorCopy(NULL, y, PS_TYPE_F32); + } else { + yPtr = (psVector *) y; + } + + // + // Generate the second derivatives at each data point. + // + spline->p_psDeriv2 = calculateSecondDerivs(xPtr, yPtr); + + // + // We generate the coefficients of the spline polynomials. I can't + // concisely explain how this code works. See above function comments + // and Numerical Recipes in C. + // + for (psS32 i=0 ; i < numSplines ; i++) { + psF32 H = xPtr->data.F32[i+1] - xPtr->data.F32[i]; + if (fabs(H) <= FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, false, "x data points are not distinct (%d %d) (%f %f).\n", + i, i+1, xPtr->data.F32[i], xPtr->data.F32[i+1]); + } + psTrace("psLib.math", 6, "x data (%f - %f) (%f)\n", xPtr->data.F32[i], xPtr->data.F32[i+1], H); + // + // ******** Calculate 0-order term ******** + // + // From (1) + spline->spline[i]->coeff[0] = yPtr->data.F32[i] * xPtr->data.F32[i+1]/H; + // From (2) + spline->spline[i]->coeff[0]-= (yPtr->data.F32[i+1] * xPtr->data.F32[i])/H; + // From (3) + psF32 tmp = (xPtr->data.F32[i+1] * xPtr->data.F32[i+1] * xPtr->data.F32[i+1]) / (H * H * H); + tmp-= xPtr->data.F32[i+1] / H; + tmp*= spline->p_psDeriv2[i] * H * H / 6.0; + spline->spline[i]->coeff[0]+= tmp; + // From (4) + tmp = -(xPtr->data.F32[i] * xPtr->data.F32[i] * xPtr->data.F32[i]) / (H * H * H); + tmp+= xPtr->data.F32[i] / H; + tmp*= spline->p_psDeriv2[i+1] * H * H / 6.0; + spline->spline[i]->coeff[0]+= tmp; + + // + // ******** Calculate 1-order term ******** + // + // From (1) + spline->spline[i]->coeff[1] = -(yPtr->data.F32[i]) / H; + // From (2) + spline->spline[i]->coeff[1]+= yPtr->data.F32[i+1] / H; + // From (3) + tmp = -3.0 * xPtr->data.F32[i+1] * xPtr->data.F32[i+1] / (H * H * H); + tmp+= (1.0 / H); + tmp*= spline->p_psDeriv2[i] * H * H / 6.0; + spline->spline[i]->coeff[1]+= tmp; + // From (4) + tmp = 3.0 * xPtr->data.F32[i] * xPtr->data.F32[i] / (H * H * H); + tmp-= 1.0 / H; + tmp*= spline->p_psDeriv2[i+1] * H * H / 6.0; + spline->spline[i]->coeff[1]+= tmp; + + // + // ******** Calculate 2-order term ******** + // + // From (3) + spline->spline[i]->coeff[2] = spline->p_psDeriv2[i] * 3.0 * xPtr->data.F32[i+1] / (6.0 * H); + // From (4) + spline->spline[i]->coeff[2]-= spline->p_psDeriv2[i+1] * 3.0 * xPtr->data.F32[i] / (6.0 * H); + + // + // ******** Calculate 3-order term ******** + // + // From (3) + spline->spline[i]->coeff[3] = -spline->p_psDeriv2[i] / (6.0 * H); + // From (4) + spline->spline[i]->coeff[3]+= spline->p_psDeriv2[i+1] / (6.0 * H); + + psTrace("psLib.math", 6, "(spline->spline[%u])->coeff[0] is %f\n", i, spline->spline[i]->coeff[0]); + psTrace("psLib.math", 6, "(spline->spline[%u])->coeff[1] is %f\n", i, spline->spline[i]->coeff[1]); + psTrace("psLib.math", 6, "(spline->spline[%u])->coeff[2] is %f\n", i, spline->spline[i]->coeff[2]); + psTrace("psLib.math", 6, "(spline->spline[%u])->coeff[3] is %f\n", i, spline->spline[i]->coeff[3]); + } + + if (PS_TYPE_F64 == y->type.type) { + psFree(yPtr); + } + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return(spline); +} + + +/***************************************************************************** +psSpline1DEval(): this routine takes an existing spline of arbitrary order +and an independent x value. It determines which spline that x corresponds +to by doing a bracket disection on the knots of the spline data structure +(vectorBinDisectF32()). Then it evaluates the spline at that x location +by a call to the 1D polynomial functions. + +XXX: The spline eval functions require input and output to be F32. however + the spline fit functions require F32 and F64. + +XXX: This only works if spline->knots if psF32. Must we add support for psU32 and +psF64? + *****************************************************************************/ +float psSpline1DEval( + const psSpline1D *spline, + float x) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(spline, NAN); + PS_ASSERT_INT_NONNEGATIVE(spline->n, NAN); + PS_ASSERT_VECTOR_TYPE(spline->knots, PS_TYPE_F32, NAN); + + psS32 n = spline->n; + if ((x < spline->knots->data.F32[0]) || (x > spline->knots->data.F32[spline->knots->n-1])) { + // If x is outside the range of spline->knots, generate a warning + // message, then return the left, or right, endpoint. + psLogMsg(__func__, PS_LOG_WARN, + "psSpline1DEval(): x ordinate (%f) is outside the spline range (%f - %f) (%d).", + x, spline->knots->data.F32[0], spline->knots->data.F32[n-1], n); + + psS32 binNum = (x < spline->knots->data.F32[0]) ? 0 : n-1; + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return(psPolynomial1DEval(spline->spline[binNum], x)); + } + + psScalar tmpScalar; + tmpScalar.type.type = PS_TYPE_F32; + tmpScalar.data.F32 = x; + psS32 binNum = p_psVectorBinDisect(spline->knots, &tmpScalar); + if (binNum < 0) { + psError(PS_ERR_UNKNOWN, false, "Could not perform bin dissection on spline->knots.\n"); + return(NAN); + } + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return(psPolynomial1DEval(spline->spline[binNum], x)); +} + + +/***************************************************************************** + *****************************************************************************/ +psVector *psSpline1DEvalVector( + const psSpline1D *spline, + const psVector *x) +{ + psTrace("psLib.math", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(spline, NULL); + PS_ASSERT_VECTOR_TYPE(spline->knots, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_NON_NULL(x, NULL); + PS_ASSERT_VECTOR_TYPE_F32_OR_F64(x, NULL); + if (psTraceGetLevel("psLib.math") >= 6) { + PS_VECTOR_PRINT_F32(x); + PS_PRINT_SPLINE2((psSpline1D *) spline); + } + + psVector *tmpVector = psVectorAlloc(x->n, PS_TYPE_F32); + if (x->type.type == PS_TYPE_F32) { + for (psS32 i=0;in;i++) { + tmpVector->data.F32[i] = psSpline1DEval(spline, x->data.F32[i]); + } + } else if (x->type.type == PS_TYPE_F64) { + for (psS32 i=0;in;i++) { + tmpVector->data.F32[i] = psSpline1DEval(spline, (psF32) x->data.F64[i]); + } + } + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return(tmpVector); +} Index: /branches/rel-1-1/psLib/src/math/psSpline.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psSpline.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psSpline.h (revision 12167) @@ -0,0 +1,111 @@ +/* @file psSpline.h + * @brief Standard Mathematical Functions. + * + * This file will hold the prototypes for procedures which allocate, free, + * and evaluate splines. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.61 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_SPLINE_H +#define PS_SPLINE_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include +#include +#include +#include + +#include "psVector.h" +#include "psScalar.h" +#include "psPolynomial.h" + +#define PS_LEFT_SPLINE_DERIV 0.0 +#define PS_RIGHT_SPLINE_DERIV 0.0 + +/** One-Dimensional Spline */ +typedef struct +{ + unsigned int n; ///< The number of spline pieces + psPolynomial1D **spline; ///< An array of n pointers to the spline polynomials + psVector *knots; ///< The boundaries between each spline piece. Size is n+1. + psF32 *p_psDeriv2; ///< For cubic splines, the second derivative at each domain point. Size is n+1. +} +psSpline1D; + +/** Allocates a psSpline1D structure + * + * Allocator for psSpline1D. + * + * @return psSpline1D* new 1-D spline struct + */ +psSpline1D *psSpline1DAlloc(); + +/** Evaluates 1-D spline polynomials at a specific coordinate. + * + * @return float result of spline polynomials evaluated at given location + */ +float psSpline1DEval( + const psSpline1D *spline, ///< Coefficients for spline polynomials + float x ///< location at which to evaluate +); + +/** Evaluates 1-D spline polynomials at a set of specific coordinates. + * + * @return psVector* results of spline polynomials evaluated at given locations + */ +psVector *psSpline1DEvalVector( + const psSpline1D *spline, ///< Coefficients of spline polynomials + const psVector *x ///< locations at which to evaluate +); + +/** Derive a one-dimensional spline fit. + * + * Given a psSpline1D data structure and a set of x,y vectors, this routine + * generates the linear splines which satisfy those data points. + * + * @return psSpline1D*: the calculated one-dimensional splines + */ +psSpline1D *psVectorFitSpline1D( + const psVector* x, ///< Ordinates (or NULL to just use the indices) + const psVector* y ///< Coordinates +); + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psSpline1D structure, false otherwise. + */ +bool psMemCheckSpline1D( + psPtr ptr ///< the pointer whose type to check +); + +/***************************************************************************** + PS_SPLINE macros: +*****************************************************************************/ +#define PS_ASSERT_SPLINE(NAME, RVAL) \ +if (false == psMemCheckSpline1D(NAME)) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: argument %s is not a psSpline1D struct.\n",\ + #NAME); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_SPLINE_NON_NULL(NAME, RVAL) \ +if ((NAME) == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: psSpline1D %s is NULL.", \ + #NAME); \ + return(RVAL); \ +} \ + + +/// @} +#endif // #ifndef PS_SPLINE_H Index: /branches/rel-1-1/psLib/src/math/psStats.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psStats.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psStats.c (revision 12167) @@ -0,0 +1,2281 @@ +/** @file psStats.c + * \brief basic statistical operations + * @ingroup Stat + * + * This file will hold the definitions of the histogram and stats data + * structures. It also contains prototypes for procedures which operate + * on those data structures. + * + * @author GLG (MHPCC), EAM (IfA) + * + * XXX: Must do + * nSubsample points + * use ->min and ->max (PS_STAT_USE_RANGE) + * + * @version $Revision: 1.201 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:08:17 $ + * + * Copyright 2006 IfA, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ +#include "psMemory.h" +#include "psAbort.h" +//#include "psImage.h" +#include "psVector.h" +#include "psTrace.h" +#include "psLogMsg.h" +#include "psError.h" +#include "psHistogram.h" +#include "psStats.h" +#include "psMinimizeLMM.h" +#include "psMinimizePolyFit.h" +#include "psPolynomial.h" +#include "psAssert.h" +#include "psMathUtils.h" +#include "psList.h" +#include "psString.h" + + + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ +#define PS_GAUSS_WIDTH 3 // The width of the Gaussian smoothing. +#define PS_CLIPPED_NUM_ITER_LB 1 // This corresponds to N in the ADD. +#define PS_CLIPPED_NUM_ITER_UB 10 +#define PS_CLIPPED_SIGMA_LB 1.0 +#define PS_CLIPPED_SIGMA_UB 10.0 +#define PS_POLY_MEDIAN_MAX_ITERATIONS 30 +#define MASK_MARK 0x80 // bit to use internally to mark data as bad + +#define PS_BIN_MIDPOINT(HISTOGRAM, BIN_NUM) \ +(0.5 * (HISTOGRAM->bounds->data.F32[(BIN_NUM)] + HISTOGRAM->bounds->data.F32[(BIN_NUM)+1])) + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +// None + +/****************************************************************************** +MISC PRIVATE STATISTICAL FUNCTIONS + +NOTE: it is assumed that any call to these statistical functions will have +been preceded by a call to the psVectorStats() function. Various sanity tests +will only be performed in psVectorStats(). + +For many of these private stats routines, it is possible that there are no acceptable elements +in the input vector (if no elements lie within range, or there are no unmasked elements, or the +input vector is NULL). In such cases, we set the desired value to NAN and return an error. +The calling function may clear the error. +*****************************************************************************/ + +// static prototypes: +static psF32 minimizeLMChi2Gauss1D(psVector *deriv, const psVector *params, const psVector *coords); +static psF32 fitQuadraticSearchForYThenReturnX(const psVector *xVec, psVector *yVec, psS32 binNum, psF32 yVal); + +/****************************************************************************** +vectorSampleMean(myVector, maskVector, maskVal, stats): calculates the +mean of the input vector. If there was a problem with the mean calculation, +this routine sets stats->sampleMean to NAN. + +using the method below, with a single loop for various options costs only a small amount and is +much easier to debug. running 10000 tests of 1000 point vectors for the two methods gives: + + separate single w/errors +(mask: 0, range: 0): 0.067 sec 0.073 sec (10%) 0.072 sec +(mask: 1, range: 0): 0.098 sec 0.102 sec ( 4%) 0.119 sec +(mask: 0, range: 0): 0.136 sec 0.162 sec (20%) 0.170 sec +(mask: 1, range: 0): 0.177 sec 0.181 sec ( 2%) 0.198 sec + +(effect of errors not tested) + +To optmize this, use a macro and ifdef in or out the three states (errors, mask, range) +*****************************************************************************/ +static bool vectorSampleMean(const psVector* myVector, + const psVector* errors, + const psVector* maskVector, + psMaskType maskVal, + psStats* stats) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + + long count = 0; // Number of points contributing to this mean + psF32 mean = 0.0; // The mean + psF32 weight; + + psF32 *data = myVector->data.F32; // Dereference + int numData = myVector->n; // Number of data points + + psU8 *maskData = (maskVector == NULL) ? NULL : maskVector->data.U8; + bool useRange = stats->options & PS_STAT_USE_RANGE; + + psF32 sumWeights = 0.0; // The sum of the weights + psF32 *errorsData = (errors == NULL) ? NULL : errors->data.F32; + + for (long i = 0; i < numData; i++) { + // Check if the data is with the specified range + if (useRange && (data[i] < stats->min)) + continue; + if (useRange && (data[i] > stats->max)) + continue; + if (maskData && (maskData[i] & maskVal)) + continue; + if (errors) { + weight = (errorsData[i] == 0) ? 0.0 : PS_SQR(errorsData[i]); + mean += data[i] * weight; + sumWeights += weight; + } else { + mean += data[i]; + } + count++; + } + if (errors) { + mean = (count > 0) ? mean / sumWeights : NAN; + } else { + mean = (count > 0) ? mean / count : NAN; + } + stats->sampleMean = mean; + if (isnan(mean)) { + // XXX raise an error here? + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + stats->results |= PS_STAT_SAMPLE_MEAN; + psTrace("psLib.math", 4, "---- %s(true) end ----\n", __func__); + return true; +} + +/****************************************************************************** +vectorMinMax(myVector, maskVector, maskVal, stats): calculates the minimum and maximum of the input vector. +If there was a problem with the calculation, this routine sets stats->max and stats->min to NAN. Return the +number of valid values in the vector (those not masked or outside the specified range. +XXX : using the method below, with a single loop for various options + costs only a small amount and is much easier to debug. running 10000 tests + of 1000 point vectors for the two methods gives: + separate single +(mask: 0, range: 0): 0.101 sec 0.149 sec +(mask: 1, range: 0): 0.125 sec 0.160 sec +(mask: 0, range: 0): 0.179 sec 0.208 sec +(mask: 1, range: 0): 0.200 sec 0.244 sec +*****************************************************************************/ +static long vectorMinMax(const psVector* myVector, + const psVector* maskVector, + psMaskType maskVal, + psStats* stats + ) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + psF32 max = -PS_MAX_F32; // The calculated maximum + psF32 min = PS_MAX_F32; // The calculated minimum + psF32 *vector = myVector->data.F32; // Dereference the vector + + int num = myVector->n; // Number of values + int numValid = 0; // Number of valid values + + psU8 *maskData = (maskVector == NULL) ? NULL : maskVector->data.U8; + bool useRange = stats->options & PS_STAT_USE_RANGE; + + for (long i = 0; i < num; i++) { + // Check if the data is with the specified range + if (useRange && (vector[i] < stats->min)) + continue; + if (useRange && (vector[i] > stats->max)) + continue; + if (maskData && (maskData[i] & maskVal)) + continue; + numValid++; + max = PS_MAX (vector[i], max); + min = PS_MIN (vector[i], min); + } + + // XXX save numValid in psStats? + if (numValid == 0) { + stats->max = NAN; + stats->min = NAN; + } else { + stats->max = max; + stats->min = min; + stats->results |= PS_STAT_MIN; + stats->results |= PS_STAT_MAX; + } + psTrace("psLib.math", 4, "---- %s(%d) end ----\n", __func__, numValid); + return numValid; +} + +/****************************************************************************** +vectorSampleMedian(myVector, maskVector, maskVal, stats): calculates the median +and quartiles of the input vector. Returns true on success (including if there +were no valid input vector elements). Expects F32 vector for input. +*****************************************************************************/ +static bool vectorSampleMedian(const psVector* inVector, + const psVector* maskVector, + psMaskType maskVal, + psStats* stats) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + + bool useRange = stats->options & PS_STAT_USE_RANGE; + psU8 *maskData = (maskVector == NULL) ? NULL : maskVector->data.U8; // Dereference the vector + psF32 *input = inVector->data.F32; // Dereference the vector + + // Allocate temporary vectors for the data. + psVector *outVector = psVectorAllocEmpty(inVector->n, PS_TYPE_F32); // Vector containing the unmasked values + psF32 *output = outVector->data.F32; // Dereference the vector + + long count = 0; // Number of valid entries + + // Store all non-masked data points within the min/max range + // into the temporary vectors. + for (long i = 0; i < inVector->n; i++) { + if (useRange && (input[i] < stats->min)) + continue; + if (useRange && (input[i] > stats->max)) + continue; + if (maskData && (maskData[i] & maskVal)) + continue; + + output[count] = input[i]; + count++; + } + outVector->n = count; + + if (count == 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "No valid data in input vector.\n"); + psFree(outVector); + stats->sampleUQ = NAN; + stats->sampleLQ = NAN; + stats->sampleMedian = NAN; + return false; + } + + // Sort the temporary vector. + // XXX this is messed up: should psVectorSort free on error or not? + if (!psVectorSort(outVector, outVector)) { // Sort in-place (since it's a copy, it's OK) + psError(PS_ERR_UNEXPECTED_NULL, false, _("Failed to sort input data.")); + stats->sampleUQ = NAN; + stats->sampleLQ = NAN; + stats->sampleMedian = NAN; + return false; + } + + // Calculate the median. Use the average if the number of samples if even. + if (count % 2 == 0) { + stats->sampleMedian = 0.5 * (output[(count/2) - 1] + output[count/2]); + } else { + stats->sampleMedian = output[count/2]; + } + + // Calculate the quartile points exactly. + stats->sampleUQ = output[(int)(0.75*count)]; + stats->sampleLQ = output[(int)(0.25*count)]; + + stats->results |= PS_STAT_SAMPLE_MEDIAN; + stats->results |= PS_STAT_SAMPLE_QUARTILE; + + // Free the temporary data structures. + psFree(outVector); + + // Return "true" on success. + psTrace("psLib.math", 4, "---- %s(true) end ----\n", __func__); + return true; +} + +/****************************************************************************** +vectorSampleStdev(myVector, maskVector, maskVal, stats): calculates the +stdev of the input vector. +Inputs + myVector + maskVector + maskVal + stats +Returns + NULL + +using the method below, with a single loop for various options costs only a small amount and is +much easier to debug. running 10000 tests of 1000 point vectors for the two methods gives: + + single +(mask: 0, range: 0): 0.193 sec +(mask: 1, range: 0): 0.257 sec +(mask: 0, range: 0): 0.349 sec +(mask: 1, range: 0): 0.401 sec + +*****************************************************************************/ +static bool vectorSampleStdev(const psVector* myVector, + const psVector* errors, + const psVector* maskVector, + psMaskType maskVal, + psStats* stats) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + + // This procedure requires the mean. If it has not been already + // calculated, then call vectorSampleMean() + if (!(stats->results & PS_STAT_SAMPLE_MEAN)) { + vectorSampleMean(myVector, errors, maskVector, maskVal, stats); + } + + // If the mean is NAN, then generate a warning and set the stdev to NAN. + if (isnan(stats->sampleMean)) { + stats->sampleStdev = NAN; + psLogMsg(__func__, PS_LOG_WARN, "WARNING: vectorSampleStdev(): vectorSampleMean() reported a NAN mean.\n"); + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return false; + } + + psF32 *data = myVector->data.F32; // Dereference + psU8 *maskData = (maskVector == NULL) ? NULL : maskVector->data.U8; + bool useRange = stats->options & PS_STAT_USE_RANGE; + psF32 *errorsData = (errors == NULL) ? NULL : errors->data.F32; + + // Accumulate the sums + double mean = stats->sampleMean; // The mean + double sumSquares = 0.0; // Sum of the squares + double sumDiffs = 0.0; // Sum of the differences + double errorDivisor = 0.0; // Division for errors + long count = 0; // Number of data points being used + for (long i = 0; i < myVector->n; i++) { + // Check if the data is with the specified range + if (useRange && (data[i] < stats->min)) + continue; + if (useRange && (data[i] > stats->max)) + continue; + if (maskData && (maskData[i] & maskVal)) + continue; + + double diff = data[i] - mean; + sumSquares += PS_SQR(diff); + sumDiffs += diff; + count++; + if (errors) { + errorDivisor += 1.0 / PS_SQR(errorsData[i]); + } + } + + if (count == 0) { + stats->sampleStdev = NAN; + psLogMsg(__func__, PS_LOG_WARN, "WARNING: vectorSampleStdev(): no valid psVector elements (%ld). Setting stats->sampleStdev = NAN.\n", count); + return false; + } + if (count == 1) { + stats->sampleStdev = 0.0; + psLogMsg(__func__, PS_LOG_WARN, "WARNING: vectorSampleStdev(): only one valid psVector elements (%ld). Setting stats->sampleStdev = 0.0.\n", count); + return false; + } + + if (errors) { + stats->sampleStdev = (1.0 / sqrtf(errorDivisor)); + } else { + stats->sampleStdev = sqrt((sumSquares - (sumDiffs * sumDiffs / (float)count)) / (float)(count - 1)); + } + stats->results |= PS_STAT_SAMPLE_STDEV; + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + + return true; +} + +/****************************************************************************** +vectorClippedStats(myVector, errors, maskInput, maskValInput, stats): calculates the +clipped stats (mean or stdev) of the input vector. + +Inputs + myVector + maskInput + maskValInput + stats +Returns + true for success; false otherwise +*****************************************************************************/ +static bool vectorClippedStats(const psVector* myVector, + const psVector* errors, + psVector* maskInput, + psMaskType maskValInput, + psStats* stats + ) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + psTrace("psLib.math", 4, "Trace level is %d\n", psTraceGetLevel("psLib.math")); + + // Ensure that stats->clipIter is within the proper range. + PS_ASSERT_INT_WITHIN_RANGE(stats->clipIter, + PS_CLIPPED_NUM_ITER_LB, + PS_CLIPPED_NUM_ITER_UB, -1); + + // Ensure that stats->clipSigma is within the proper range. + PS_ASSERT_FLOAT_WITHIN_RANGE(stats->clipSigma, + PS_CLIPPED_SIGMA_LB, + PS_CLIPPED_SIGMA_UB, -1); + + // unless we succeed, these will have NAN values + stats->clippedMean = NAN; + stats->clippedStdev = NAN; + stats->clippedNvalues = 0; + + // We copy the mask vector, to preserve the original + psMaskType maskVal = MASK_MARK | maskValInput; + psVector *tmpMask = psVectorAlloc(myVector->n, PS_TYPE_U8); + psVectorInit(tmpMask, 0); + if (maskInput) { + for (long i = 0; i < myVector->n; i++) { + if (maskInput->data.U8[i] & maskValInput) { + tmpMask->data.U8[i] = maskVal; + } + } + } + + // 1. Compute the sample median, which we save for output + vectorSampleMedian(myVector, tmpMask, maskVal, stats); + if (isnan(stats->sampleMedian)) { + psLogMsg(__func__, PS_LOG_WARN, "Call to vectorSampleMedian returned NAN\n"); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(tmpMask); + return false; + } + psTrace("psLib.math", 6, "The initial sample median is %f\n", stats->sampleMedian); + + // 2. Compute the sample standard deviation, which we save for output + vectorSampleStdev(myVector, errors, tmpMask, maskVal, stats); + if (isnan(stats->sampleStdev)) { + psLogMsg(__func__, PS_LOG_WARN, "Call to vectorSampleStdev returned NAN\n"); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(tmpMask); + return false; + } + psTrace("psLib.math", 6, "The initial sample stdev is %f\n", stats->sampleStdev); + + // 3. Use the sample median as the first estimator of the mean X. + psF32 clippedMean = stats->sampleMedian; + + // 4. Use the sample stdev as the first estimator of the mean stdev. + psF32 clippedStdev = stats->sampleStdev; + + // 5. Repeat N (stats->clipIter) times: + long numClipped = 0; // Number of values clipped + bool clipped = true; // Have we clipped anything in this iteration + for (int iter = 0; iter < stats->clipIter && clipped; iter++) { + clipped = false; + psTrace("psLib.math", 6, "------------ Iteration %d ------------\n", iter); + // a) Exclude all values x_i for which |x_i - x| > K * stdev + if (errors) { + // XXXX if we convert errors to variance, this should square the other terms (A*A faster than sqrt(A)) + for (long j = 0; j < myVector->n; j++) { + if (!tmpMask->data.U8[j] && + fabsf(myVector->data.F32[j] - clippedMean) > stats->clipSigma * errors->data.F32[j]) { + tmpMask->data.U8[j] = 0xff; + psTrace("psLib.math", 10, "Clipped %ld: %f +/- %f\n", j, + myVector->data.F32[j], errors->data.F32[j]); + numClipped++; + clipped = true; + } + } + } else { + for (long j = 0; j < myVector->n; j++) { + if (!tmpMask->data.U8[j] && + fabsf(myVector->data.F32[j] - clippedMean) > (stats->clipSigma * clippedStdev)) { + tmpMask->data.U8[j] = 0xff; + psTrace("psLib.math", 10, "Clipped %ld: %f\n", j, myVector->data.F32[j]); + numClipped++; + clipped = true; + } + } + } + + // b) compute new mean and stdev + // Allocate a psStats structure for calculating the mean and stdev. + psStats *statsTmp = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + vectorSampleMean(myVector, errors, tmpMask, maskVal, statsTmp); + vectorSampleStdev(myVector, errors, tmpMask, maskVal, statsTmp); + psTrace("psLib.math", 6, "The new sample mean is %f\n", statsTmp->sampleMean); + psTrace("psLib.math", 6, "The new sample stdev is %f\n", statsTmp->sampleStdev); + + // If the new mean and stdev are NAN, we must exit the loop. + // Otherwise, use the new results and continue. + if (isnan(statsTmp->sampleMean) || isnan(statsTmp->sampleStdev)) { + // Exit loop. + iter = stats->clipIter; + psError(PS_ERR_UNKNOWN, true, "vectorSampleMean() or vectorSampleStdev() returned a NAN.\n"); + psFree(tmpMask); + return false; + } else { + clippedMean = statsTmp->sampleMean; + clippedStdev = statsTmp->sampleStdev; + } + psFree(statsTmp); + } + + // Number of values used in calculation is the total number of data values, minus those we clipped + stats->clippedNvalues = myVector->n - numClipped; + + // 7. The last calcuated value of x is the clipped mean. + // 8. The last calcuated value of stdev is the clipped stdev. + // we always return both stats even if only one was requested + stats->clippedMean = clippedMean; + stats->clippedStdev = clippedStdev; + + stats->results |= PS_STAT_CLIPPED_MEAN; + stats->results |= PS_STAT_CLIPPED_STDEV; + + psTrace("psLib.math", 6, "The final clipped mean is %f\n", clippedMean); + psTrace("psLib.math", 6, "The final clipped stdev is %f\n", clippedStdev); + + psFree(tmpMask); + psTrace("psLib.math", 4, "---- %s(true) end ----\n", __func__); + return true; +} + +/****************************************************************************** +vectorRobustStats(myVector, maskInput, maskValInput, stats): This is the new +version of the robust stats routine. + +XXX: MUST DO: If the errors in the input values are known, then the same +approach is used, except that the histograms become probability density +functions (PDFs). In this case, the input values are spread out, so that they +do not simply contribute a single unit to the histogram, but rather contribute +a fraction of a value, equivalent to the weight. In the interests of speed, a +boxcar PDF may be used to represent each input value (as opposed to a +Gaussian), where the boxcar width is equal to 2p2 ln 2 times the error and +each input value contributes constant area. Then the robust median and +standard deviation are estimated in the same manner as above. + +XXX: Check for errors in psLib routines that we call. + +XXX: Review and ensure that all memory is free'ed at premature exits. +*****************************************************************************/ +#define INITIAL_NUM_BINS 1000.0 +static bool vectorRobustStats(const psVector* myVector, + const psVector* errors, + psVector* maskInput, + psMaskType maskValInput, + psStats* stats) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(myVector); + } + + psScalar tmpScalar; // Temporary scalar variable, for p_psVectorBinDisect + tmpScalar.type.type = PS_TYPE_F32; + + // we need to generate an internal mask and maskVal which ensures a bit is set + // and tested even if there is no supplied mask (and/or the maskVal is 0) + // XXX this would be better if we had globally defined mask values + psMaskType maskVal = MASK_MARK | maskValInput; + psVector *mask = psVectorAlloc(myVector->n, PS_TYPE_MASK); // The actual mask we will use + psVectorInit(mask, 0); + if (maskInput) { + for (long i = 0; i < myVector->n; i++) { + if (maskInput->data.U8[i] & maskValInput) { + mask->data.U8[i] = maskVal; + } + } + } + + // statsMinMax is only applied to a subset of the data points + psStats *statsMinMax = psStatsAlloc(PS_STAT_MIN | PS_STAT_MAX); // Statistics for min and max + psHistogram *histogram = NULL; // Histogram of the data + psHistogram *cumulative = NULL; // Cumulative histogram of the data + float min = NAN, max = NAN; // Mimimum and maximum values + float sigma = NAN; // The robust standard deviation + long totalDataPoints = 0; // Total number of (unmasked) data points + + // Iterate to get the best bin size + for (int iterate = 1; iterate > 0; iterate++) { + psTrace("psLib.math", 6, "-------------------- Iterating on Bin size. Iteration number %d --------------------\n", iterate); + + // Get the minimum and maximum values + int numValid = vectorMinMax(myVector, mask, maskVal, statsMinMax); // Number of valid values + min = statsMinMax->min; + max = statsMinMax->max; + if (numValid == 0 || isnan(min) || isnan(max)) { + // Data range calculation failed + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the min/max of the input vector.\n"); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(mask); + return false; + } + psTrace("psLib.math", 6, "Data min/max is (%.2f, %.2f)\n", min, max); + + // If all data points have the same value, then we set the appropriate members of stats and return. + if (fabs(max - min) <= FLT_EPSILON) { + psTrace("psLib.math", 5, "All data points have the same value: %f.\n", min); + stats->robustMedian = min; + stats->robustStdev = 0.0; + stats->robustUQ = min; + stats->robustLQ = min; + stats->robustN50 = numValid; + psFree(statsMinMax); + + stats->results |= PS_STAT_ROBUST_MEDIAN; + stats->results |= PS_STAT_ROBUST_STDEV; + stats->results |= PS_STAT_ROBUST_QUARTILE; + + psTrace("psLib.math", 4, "---- %s(0) end ----\n", __func__); + psFree(mask); + return true; + } + + float binSize = 0.0; // Size of bins for histogram + if ((iterate == 1) && (stats->options & PS_STAT_USE_BINSIZE)) { + // Set initial bin size to the specified value. + binSize = stats->binsize; + psTrace("psLib.math", 6, "Setting initial robust bin size to %.2f\n", binSize); + } else { + // Determine the bin size of the robust histogram, using the pre-defined number of bins + binSize = (max - min) / INITIAL_NUM_BINS; + } + psTrace("psLib.math", 6, "Initial robust bin size is %.2f\n", binSize); + + // ADD step 0: Construct the histogram with the specified bin size. NOTE: we can not specify the bin + // size precisely since the argument to psHistogramAlloc() is the number of bins, not the binSize. If + // we get here, we know that binSize != 0.0. + long numBins = (max - min) / binSize; // Number of bins + psTrace("psLib.math", 6, "Numbins is %ld\n", numBins); + psTrace("psLib.math", 6, "Creating a robust histogram from data range (%.2f - %.2f)\n", min, max); + // Generate the histogram + histogram = psHistogramAlloc(min, max, numBins); + // XXXXX we need to consider this step if errors -> variance + if (!psVectorHistogram(histogram, myVector, errors, mask, maskVal)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate histogram for robust statistics.\n"); + psFree(histogram); + psFree(statsMinMax); + return false; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(histogram->bounds); + PS_VECTOR_PRINT_F32(histogram->nums); + } + + // ADD step 1: Convert the specific histogram to a cumulative histogram + cumulative = psHistogramAlloc(min, max, numBins); + cumulative->nums->data.F32[0] = histogram->nums->data.F32[0]; + for (long i = 1; i < histogram->nums->n; i++) { + cumulative->nums->data.F32[i] = cumulative->nums->data.F32[i-1] + histogram->nums->data.F32[i]; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(cumulative->bounds); + PS_VECTOR_PRINT_F32(cumulative->nums); + } + + // ADD step 2: Find the bin which contains the 50% data point. + totalDataPoints = cumulative->nums->data.F32[numBins - 1]; + psTrace("psLib.math", 6, "Total data points is %ld\n", totalDataPoints); + long binMedian; + if (totalDataPoints/2.0 < cumulative->nums->data.F32[0]) { + // Special case: the median is in the first bin. Perhaps we should recode this. + // XXX: Must try a special case where the median in in the last bin. + binMedian = 0; + } else { + tmpScalar.data.F32 = totalDataPoints/2.0; + binMedian = 1 + p_psVectorBinDisect(cumulative->nums, &tmpScalar); + if (binMedian < 0) { + psError(PS_ERR_UNKNOWN, false, + "Failed to calculate the 50 precent data point (%ld).\n", binMedian); + psFree(statsMinMax); + psFree(histogram); + psFree(cumulative); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(mask); + return false; + } + } + psTrace("psLib.math", 6, "The median bin is %ld (%.2f to %.2f)\n", binMedian, + cumulative->bounds->data.F32[binMedian], cumulative->bounds->data.F32[binMedian+1]); + + // ADD step 3: Interpolate to the exact 50% position: this is the robust histogram median. + stats->robustMedian = fitQuadraticSearchForYThenReturnX(cumulative->bounds, cumulative->nums, + binMedian, totalDataPoints/2.0); + if (isnan(stats->robustMedian)) { + psError(PS_ERR_UNKNOWN, false, + "Failed to fit a quadratic and calculate the 50-percent position.\n"); + psFree(statsMinMax); + psFree(histogram); + psFree(cumulative); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(mask); + return false; + } + psTrace("psLib.math", 6, "Current robust median is %f\n", stats->robustMedian); + + // ADD step 4: Find the bins which contains the 15.8655% and 84.1345% data points. + long binLo = 0; // Bin containing the 15.8655% mark + tmpScalar.data.F32 = totalDataPoints * 0.158655f; + if (tmpScalar.data.F32 > cumulative->nums->data.F32[0]) { + // NOTE: the (+1) here is because of the way p_psVectorBinDisect is defined. + binLo = 1 + p_psVectorBinDisect(cumulative->nums, &tmpScalar); + if (binLo > cumulative->nums->n-1) { + binLo = cumulative->nums->n-1; + } + } + + long binHi = 0; // Bin containing the 84.1345% mark + tmpScalar.data.F32 = totalDataPoints * 0.841345f; + if (tmpScalar.data.F32 > cumulative->nums->data.F32[0]) { + // NOTE: the (+1) here is because of the way p_psVectorBinDisect is defined. + binHi = 1 + p_psVectorBinDisect(cumulative->nums, &tmpScalar); + if (binHi > cumulative->nums->n-1) { + binHi = cumulative->nums->n-1; + } + } + psTrace("psLib.math", 6, "The 15.8655%% and 84.1345%% data point bins are (%ld, %ld).\n", + binLo, binHi); + psTrace("psLib.math", 6, "binLo midpoint is %f\n", PS_BIN_MIDPOINT(cumulative, binLo)); + psTrace("psLib.math", 6, "binHi midpoint is %f\n", PS_BIN_MIDPOINT(cumulative, binHi)); + + if ((binLo < 0) || (binHi < 0)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the 15.8655%% and 84.1345%% data points.\n"); + psFree(statsMinMax); + psFree(histogram); + psFree(cumulative); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(mask); + return false; + } + + // ADD step 4b: Interpolate Sigma (linearly) to find these two positions exactly: these are the 1sigma positions. + psTrace("psLib.math", 6, "binLo is %ld. Nums at that bin and the next are (%.2f, %.2f)\n", + binLo, cumulative->nums->data.F32[binLo], cumulative->nums->data.F32[binLo+1]); + psTrace("psLib.math", 6, "binHi is %ld. Nums at that bin and the next are (%.2f, %.2f)\n", + binHi, cumulative->nums->data.F32[binHi], cumulative->nums->data.F32[binHi+1]); + + float deltaBounds, deltaNums, prevPixels; + float percentNums, base, binLoF32; + + // find the -1 sigma points with linear interpolation + deltaBounds = cumulative->bounds->data.F32[binLo+1] - cumulative->bounds->data.F32[binLo]; + if (binLo == 0) { + deltaNums = cumulative->nums->data.F32[0]; + prevPixels = 0; + } else { + deltaNums = cumulative->nums->data.F32[binLo] - cumulative->nums->data.F32[binLo-1]; + prevPixels = cumulative->nums->data.F32[binLo-1]; + } + percentNums = (totalDataPoints * 0.158655f) - prevPixels; + base = cumulative->bounds->data.F32[binLo]; + binLoF32 = base + (deltaBounds / deltaNums) * percentNums; // Value for the 15.8655% mark + psTrace("psLib.math", 6, + "(base, deltaBounds, deltaNums, prevPixels, percentNums) is (%.2f %.2f %.2f %.2f %.2f)\n", + base, deltaBounds, deltaNums, prevPixels, percentNums); + + // find the +1 sigma points with linear interpolation + deltaBounds = cumulative->bounds->data.F32[binHi+1] - cumulative->bounds->data.F32[binHi]; + if (binHi == 0) { + deltaNums = cumulative->nums->data.F32[0]; + prevPixels = 0; + } else { + deltaNums = cumulative->nums->data.F32[binHi] - cumulative->nums->data.F32[binHi-1]; + prevPixels = cumulative->nums->data.F32[binHi-1]; + } + percentNums = (totalDataPoints * 0.841345f) - prevPixels; + base = cumulative->bounds->data.F32[binHi]; + float binHiF32 = base + (deltaBounds / deltaNums) * percentNums; // Value for the 84.1345% mark + psTrace("psLib.math", 6, + "(base, deltaBounds, deltaNums, prevPixels, percentNums) is (%.2f %.2f %.2f %.2f %.2f)\n", + base, deltaBounds, deltaNums, prevPixels, percentNums); + + // report +/- 1 sigma points + psTrace("psLib.math", 5, + "The exact 15.8655 and 84.1345 percent data point positions are: (%f, %f)\n", + binLoF32, binHiF32); + + // ADD step 5: Determine SIGMA as 1/2 of the distance between these positions. + sigma = (binHiF32 - binLoF32) / 2.0; + psTrace("psLib.math", 6, "The current sigma is %f.\n", sigma); + stats->robustStdev = sigma; + + // ADD step 6: If the measured SIGMA is less than 2 times the bin size, exclude points which are more + // than 25 bins from the median, recalculate the bin size, and perform the algorithm again. + if (sigma < (2 * binSize)) { + psTrace("psLib.math", 6, "*************: Do another iteration (%f %f).\n", sigma, binSize); + long maskLo = PS_MAX(0, (binMedian - 25)); // Low index for masking region + long maskHi = PS_MIN(histogram->bounds->n - 1, (binMedian + 25)); // High index for masking + psF32 medianLo = histogram->bounds->data.F32[maskLo]; // Value at low index + psF32 medianHi = histogram->bounds->data.F32[maskHi]; // Value at high index + psTrace("psLib.math", 6, "Masking data more than 25 bins from the median\n"); + psTrace("psLib.math", 6, + "The median is at bin number %ld. We mask bins outside the bin range (%ld:%ld)\n", + binMedian, maskLo, maskHi); + psTrace("psLib.math", 6, "Masking data outside (%f %f)\n", medianLo, medianHi); + for (long i = 0 ; i < myVector->n ; i++) { + if ((myVector->data.F32[i] < medianLo) || (myVector->data.F32[i] > medianHi)) { + mask->data.U8[i] |= MASK_MARK; + psTrace("psLib.math", 6, "Masking element %ld is %f\n", i, myVector->data.F32[i]); + } + } + // Free the histograms; they will be recreated on the next iteration, with new bounds + psFree(histogram); + psFree(cumulative); + } else { + // We've got the bin size correct now + psTrace("psLib.math", 6, "*************: No more iteration. sigma is %f\n", sigma); + iterate = -1; + } + } + psFree(histogram); + + // ADD step 7: Find the bins which contains the 25% and 75% data points. + long binLo25 = 0; // Bin containing the 25% value + long binHi25 = 0; // Bin containing the 75% value + + tmpScalar.data.F32 = totalDataPoints * 0.25f; + if (tmpScalar.data.F32 <= cumulative->nums->data.F32[0]) { + // Special case where its in first bin. The last bin should be handled automatically. + binLo25 = 0; + } else { + binLo25 = 1 + p_psVectorBinDisect(cumulative->nums, &tmpScalar); + } + tmpScalar.data.F32 = totalDataPoints * 0.75f; + if (tmpScalar.data.F32 <= cumulative->nums->data.F32[0]) { + // Special case where its in first bin. The last bin should be handled automatically. + binHi25 = 0; + } else { + binHi25 = 1 + p_psVectorBinDisect(cumulative->nums, &tmpScalar); + } + if ((binLo25 < 0) || (binHi25 < 0)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the 25 and 75 percent data points\n"); + psFree(statsMinMax); + psFree(cumulative); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + psFree(mask); + return false; + } + psTrace("psLib.math", 6, "The 25-percent and 75-precent data point bins are (%ld, %ld).\n", binLo25, binHi25); + + // ADD step 8: Interpolate to find these two positions exactly: these are the upper and lower quartile + // positions. + psF32 binLo25F32 = fitQuadraticSearchForYThenReturnX(cumulative->bounds, cumulative->nums, + binLo25, totalDataPoints * 0.25f); + psF32 binHi25F32 = fitQuadraticSearchForYThenReturnX(cumulative->bounds, cumulative->nums, + binHi25, totalDataPoints * 0.75f); + psFree(cumulative); + + if (isnan(binLo25F32) || isnan(binHi25F32)) { + psError(PS_ERR_UNKNOWN, false, + "could not determine the robustUQ: fitQuadraticSearchForYThenReturnX() returned a NAN.\n"); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(1) end ----\n", __func__); + psFree(mask); + return false; + } + + stats->results |= PS_STAT_ROBUST_QUARTILE; + stats->robustLQ = binLo25F32; + stats->robustUQ = binHi25F32; + psTrace("psLib.math", 6, "The 25 and 75 percent data point exact positions are (%f, %f).\n", + binLo25F32, binHi25F32); + long N50 = 0; + for (long i = 0 ; i < myVector->n ; i++) { + if (!mask->data.U8[i] && + (binLo25F32 <= myVector->data.F32[i]) && (binHi25F32 >= myVector->data.F32[i])) { + N50++; + } + } + stats->robustN50 = N50; + psTrace("psLib.math", 6, "The robustN50 is %ld.\n", N50); + + // Clean up + psFree(statsMinMax); + psFree(mask); + + stats->results |= PS_STAT_ROBUST_MEDIAN; + stats->results |= PS_STAT_ROBUST_STDEV; + + psTrace("psLib.math", 4, "---- %s(0) end ----\n", __func__); + return true; +} + +/* + * vectorFittedStats requires guess for fittedMean and fittedStdev + * robustN50 should also be set + */ +static bool vectorFittedStats (const psVector* myVector, + const psVector* errors, + psVector* mask, + psMaskType maskVal, + psStats* stats) +{ + + // This procedure requires the mean. If it has not been already + // calculated, then call vectorSampleMean() + if (!(stats->results & PS_STAT_ROBUST_MEDIAN)) { + vectorRobustStats(myVector, errors, mask, maskVal, stats); + } + + // If the mean is NAN, then generate a warning and set the stdev to NAN. + if (isnan(stats->robustMedian)) { + stats->fittedStdev = NAN; + stats->fittedStdev = NAN; + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return false; + } + + float guessStdev = stats->robustStdev; // pass the guess sigma + float guessMean = stats->robustMedian; // pass the guess mean + + psTrace("psLib.math", 6, "The guess mean is %f.\n", guessMean); + psTrace("psLib.math", 6, "The guess stdev is %f.\n", guessStdev); + + bool done = false; + for (int iteration = 0; !done && (iteration < 2); iteration ++) { + psStats *statsMinMax = psStatsAlloc(PS_STAT_MIN | PS_STAT_MAX); // Statistics for min and max + + psScalar tmpScalar; // Temporary scalar variable, for p_psVectorBinDisect + tmpScalar.type.type = PS_TYPE_F32; + + psF32 binSize = 1; + if (stats->options & PS_STAT_USE_BINSIZE) { + // Set initial bin size to the specified value. + binSize = stats->binsize; + psTrace("psLib.math", 6, "Setting initial robust bin size to %.2f\n", binSize); + } else { + // construct a histogram with (sigma/10 < binsize < sigma) + // set roughly so that the lowest bins have about 2 cnts + // Nsmallest ~ N50 / (4*dN)) + psF32 dN = PS_MAX (1, PS_MIN (10, stats->robustN50 / 8)); + binSize = guessStdev / dN; + } + + // Determine the min/max of the vector (which prior outliers masked out) + int numValid = vectorMinMax(myVector, mask, maskVal, statsMinMax); // Number of values + float min = statsMinMax->min; + float max = statsMinMax->max; + if (numValid == 0 || isnan(min) || isnan(max)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the min/max of the input vector.\n"); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // Calculate the number of bins. + // XXX can we calculate the binMin, binMax **before** building this histogram? + long numBins = (max - min) / binSize; + psTrace("psLib.math", 6, "The new min/max values are (%f, %f).\n", min, max); + psTrace("psLib.math", 6, "The new bin size is %f.\n", binSize); + psTrace("psLib.math", 6, "The numBins is %ld\n", numBins); + + psHistogram *histogram = psHistogramAlloc(min, max, numBins); // A new histogram (without outliers) + if (!psVectorHistogram(histogram, myVector, errors, mask, maskVal)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate histogram for fitted statistics.\n"); + psFree(histogram); + psFree(statsMinMax); + return false; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(histogram->nums); + } + + long binMin = 0; // Low bin to check + long binMax = 0; // High bin to check + + // Fit a Gaussian to the bins in the requested range about the guess mean + // min,max overrides clipSigma + psF32 maxFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + maxFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->max)) { + maxFitSigma = fabs(stats->max); + } + + psF32 minFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + minFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minFitSigma = fabs(stats->min); + } + + tmpScalar.data.F32 = guessMean - minFitSigma*guessStdev; + if (tmpScalar.data.F32 < min) { + binMin = 0; + } else { + binMin = p_psVectorBinDisect(histogram->bounds, &tmpScalar); + } + tmpScalar.data.F32 = guessMean + maxFitSigma*guessStdev; + if (tmpScalar.data.F32 > max) { + binMax = histogram->bounds->n - 1; + } else { + binMax = p_psVectorBinDisect(histogram->bounds, &tmpScalar); + } + if (binMin < 0 || binMax < 0) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the -%f sigma : +%f sigma bins\n", minFitSigma, maxFitSigma); + psFree(statsMinMax); + psFree(histogram); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // Generate the variables that will be used in the Gaussian fitting + // XXX EAM : we should test / guarantee that there are at least 3 (right?) bins + psVector *y = psVectorAlloc((1 + (binMax - binMin)), PS_TYPE_F32); // Vector of coordinates + psArray *x = psArrayAlloc((1 + (binMax - binMin))); // Array of ordinates + for (long i = binMin, j = 0; i <= binMax ; i++, j++) { + y->data.F32[j] = histogram->nums->data.F32[i]; + psVector *ordinate = psVectorAlloc(1, PS_TYPE_F32); // The ordinate value + ordinate->data.F32[0] = PS_BIN_MIDPOINT(histogram, i); + x->data[j] = ordinate; + } + if (psTraceGetLevel("psLib.math") >= 8) { + // XXX: Print the x array somehow. + PS_VECTOR_PRINT_F32(y); + } + psTrace("psLib.math", 6, "The clipped numBins is %ld\n", y->n); + psTrace("psLib.math", 6, "The clipped min is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMin), binMin); + psTrace("psLib.math", 6, "The clipped max is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMax), binMax); + + // Normalize y to [0.0:1.0] (since the psMinimizeLMChi2Gauss1D() functions is [0.0:1.0]) + // XXX EAM : why not just fit the normalization as well?? + p_psNormalizeVectorRange(y, 0.0, 1.0); + + // Fit a Gaussian to the data. + psMinimization *minimizer = psMinimizationAlloc(100, 0.01); // The minimizer information + psVector *params = psVectorAlloc(2, PS_TYPE_F32); // Parameters for the Gaussian + // Initial guess for the mean (index 0) and var (index 1). + params->data.F32[0] = guessMean; + params->data.F32[1] = PS_SQR(guessStdev); + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(params); + PS_VECTOR_PRINT_F32(y); + } + if (!psMinimizeLMChi2(minimizer, NULL, params, NULL, x, y, NULL, minimizeLMChi2Gauss1D)) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit a gaussian to the robust histogram.\n"); + psFree(params); + psFree(minimizer); + psFree(x); + psFree(y); + psFree(histogram); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(params); + } + + guessMean = params->data.F32[0]; + guessStdev = sqrt(params->data.F32[1]); + if (guessStdev > 0.75*stats->robustStdev) { + done = true; + } + + // Clean up after fitting + psFree (params); + psFree (minimizer); + psFree (x); + psFree (y); + psFree (histogram); + psFree (statsMinMax); + } + + // The fitted mean is the Gaussian mean. + stats->fittedMean = guessMean; + psTrace("psLib.math", 6, "The fitted mean is %f.\n", stats->fittedMean); + + // The fitted standard deviation + stats->fittedStdev = guessStdev; + psTrace("psLib.math", 6, "The fitted stdev is %f.\n", stats->fittedStdev); + + stats->results |= PS_STAT_FITTED_MEAN; + stats->results |= PS_STAT_FITTED_STDEV; + + return true; +} + + +/******************** + * vectorFittedStats_v2 requires guess for fittedMean and fittedStdev + * robustN50 should also be set + * gaussian fit is performed using 2D polynomial to ln(y) + ********************/ +static bool vectorFittedStats_v2 (const psVector* myVector, + const psVector* errors, + psVector* mask, + psMaskType maskVal, + psStats* stats) +{ + + // This procedure requires the mean. If it has not been already + // calculated, then call vectorSampleMean() + if (!(stats->results & PS_STAT_ROBUST_MEDIAN)) { + vectorRobustStats(myVector, errors, mask, maskVal, stats); + } + + // If the mean is NAN, then generate a warning and set the stdev to NAN. + if (isnan(stats->robustMedian)) { + stats->fittedStdev = NAN; + stats->fittedStdev = NAN; + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return false; + } + + float guessStdev = stats->robustStdev; // pass the guess sigma + float guessMean = stats->robustMedian; // pass the guess mean + + psTrace("psLib.math", 6, "The ** starting ** guess mean is %f.\n", guessMean); + psTrace("psLib.math", 6, "The ** starting ** guess stdev is %f.\n", guessStdev); + + bool done = false; + for (int iteration = 0; !done && (iteration < 2); iteration ++) { + psStats *statsMinMax = psStatsAlloc(PS_STAT_MIN | PS_STAT_MAX); // Statistics for min and max + + psScalar tmpScalar; // Temporary scalar variable, for p_psVectorBinDisect + tmpScalar.type.type = PS_TYPE_F32; + + psF32 binSize = 1; + if (stats->options & PS_STAT_USE_BINSIZE) { + // Set initial bin size to the specified value. + binSize = stats->binsize; + psTrace("psLib.math", 6, "Setting initial robust bin size to %.2f\n", binSize); + } else { + // construct a histogram with (sigma/10 < binsize < sigma) + // set roughly so that the lowest bins have about 2 cnts + // Nsmallest ~ N50 / (4*dN)) + psF32 dN = PS_MAX (1, PS_MIN (10, stats->robustN50 / 8)); + binSize = guessStdev / dN; + } + + // Determine the min/max of the vector (which prior outliers masked out) + int numValid = vectorMinMax(myVector, mask, maskVal, statsMinMax); // Number of values + float min = statsMinMax->min; + float max = statsMinMax->max; + if (numValid == 0 || isnan(min) || isnan(max)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the min/max of the input vector.\n"); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // Calculate the number of bins. + // XXX can we calculate the binMin, binMax **before** building this histogram? + long numBins = (max - min) / binSize; + psTrace("psLib.math", 6, "The new min/max values are (%f, %f).\n", min, max); + psTrace("psLib.math", 6, "The new bin size is %f.\n", binSize); + psTrace("psLib.math", 6, "The numBins is %ld\n", numBins); + + psHistogram *histogram = psHistogramAlloc(min, max, numBins); // A new histogram (without outliers) + if (!psVectorHistogram(histogram, myVector, errors, mask, maskVal)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate histogram for fitted statistcs v2.\n"); + psFree(histogram); + psFree(statsMinMax); + return false; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(histogram->nums); + } + + long binMin = 0; // Low bin to check + long binMax = 0; // High bin to check + + // Fit a Gaussian to the bins in the requested range about the guess mean + // min,max overrides clipSigma + psF32 maxFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + maxFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->max)) { + maxFitSigma = fabs(stats->max); + } + + psF32 minFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + minFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minFitSigma = fabs(stats->min); + } + + tmpScalar.data.F32 = guessMean - minFitSigma*guessStdev; + if (tmpScalar.data.F32 < min) { + binMin = 0; + } else { + binMin = p_psVectorBinDisect(histogram->bounds, &tmpScalar); + } + tmpScalar.data.F32 = guessMean + maxFitSigma*guessStdev; + if (tmpScalar.data.F32 > max) { + binMax = histogram->bounds->n - 1; + } else { + binMax = p_psVectorBinDisect(histogram->bounds, &tmpScalar); + } + if (binMin < 0 || binMax < 0) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the -%f sigma : +%f sigma bins\n", minFitSigma, maxFitSigma); + psFree(statsMinMax); + psFree(histogram); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // Generate the variables that will be used in the Gaussian fitting + // XXX EAM : we should test / guarantee that there are at least 3 (right?) bins + psVector *y = psVectorAllocEmpty((1 + (binMax - binMin)), PS_TYPE_F32); // Vector of coordinates + psVector *x = psVectorAllocEmpty((1 + (binMax - binMin)), PS_TYPE_F32); // Vector of ordinates + long j = 0; + for (long i = binMin; i <= binMax ; i++) { + if (histogram->nums->data.F32[i] <= 0.0) + continue; + x->data.F32[j] = PS_BIN_MIDPOINT(histogram, i); + y->data.F32[j] = log(histogram->nums->data.F32[i]); + // XXX note this is the natural log: expected distribution is A exp(-(x-xo)^2/2sigma^2) + j++; + } + y->n = x->n = j; + if (psTraceGetLevel("psLib.math") >= 8) { + // XXX: Print the x array somehow. + PS_VECTOR_PRINT_F32(y); + } + psTrace("psLib.math", 6, "The clipped numBins is %ld\n", y->n); + psTrace("psLib.math", 6, "The clipped min is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMin), binMin); + psTrace("psLib.math", 6, "The clipped max is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMax), binMax); + + // fit 2nd order polynomial to ln(y) = -(x-xo)^2/2sigma^2 + psPolynomial1D *poly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + + // XXX how can we protect against some extreme outliers? the robust histogram + // should have already dealt with those, but we are again sensitive to them... + // psStats *fitStats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + // fitStats->clipIter = 3.0; + // fitStats->clipSigma = 3.0; + // psVector *fitMask = psVectorAlloc(y->n, PS_TYPE_U8); + // psVectorInit (fitMask, 0); + + if (!psVectorFitPolynomial1D (poly, NULL, 0, y, NULL, x)) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit a gaussian to the robust histogram.\n"); + psFree(x); + psFree(y); + psFree(poly); + psFree(histogram); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + if (poly->coeff[2] >= 0.0) { + psTrace("psLib.math", 6, "Parabolic fit results: %f + %f x + %f x^2\n", poly->coeff[0], poly->coeff[1], poly->coeff[2]); + psError(PS_ERR_UNKNOWN, false, "fit did not converge\n"); + psFree(x); + psFree(y); + psFree(poly); + psFree(histogram); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + guessStdev = sqrt(-0.5/poly->coeff[2]); + guessMean = poly->coeff[1]*PS_SQR(guessStdev); + if (guessStdev > 0.75*stats->robustStdev) { + done = true; + } else { + psTrace("psLib.math", 6, "Parabolic fit results: %f + %f x + %f x^2\n", poly->coeff[0], poly->coeff[1], poly->coeff[2]); + psTrace("psLib.math", 6, "The new guess mean is %f.\n", guessMean); + psTrace("psLib.math", 6, "The new guess stdev is %f.\n", guessStdev); + } + + // Clean up after fitting + psFree (x); + psFree (y); + psFree (poly); + // psFree (fitStats); + // psFree (fitMask); + psFree (histogram); + psFree (statsMinMax); + } + + // The fitted mean is the Gaussian mean. + stats->fittedMean = guessMean; + psTrace("psLib.math", 6, "The fitted mean is %f.\n", stats->fittedMean); + + // The fitted standard deviation + stats->fittedStdev = guessStdev; + psTrace("psLib.math", 6, "The fitted stdev is %f.\n", stats->fittedStdev); + + stats->results |= PS_STAT_FITTED_MEAN_V2; + stats->results |= PS_STAT_FITTED_STDEV_V2; + + return true; +} + +/******************** + * perform an asymmetric fit to the population + * vectorFittedStats_v3 requires guess for fittedMean and fittedStdev + * robustN50 should also be set + * gaussian fit is performed using 2D polynomial to ln(y) + ********************/ +static bool vectorFittedStats_v3 (const psVector* myVector, + const psVector* errors, + psVector* mask, + psMaskType maskVal, + psStats* stats) +{ + + // This procedure requires the mean. If it has not been already + // calculated, then call vectorSampleMean() + if (!(stats->results & PS_STAT_ROBUST_MEDIAN)) { + vectorRobustStats(myVector, errors, mask, maskVal, stats); + } + + // If the mean is NAN, then generate a warning and set the stdev to NAN. + if (isnan(stats->robustMedian)) { + stats->fittedStdev = NAN; + stats->fittedStdev = NAN; + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return false; + } + + float guessStdev = stats->robustStdev; // pass the guess sigma + float guessMean = stats->robustMedian; // pass the guess mean + + psTrace("psLib.math", 6, "The ** starting ** guess mean is %f.\n", guessMean); + psTrace("psLib.math", 6, "The ** starting ** guess stdev is %f.\n", guessStdev); + + bool done = false; + for (int iteration = 0; !done && (iteration < 2); iteration ++) { + psStats *statsMinMax = psStatsAlloc(PS_STAT_MIN | PS_STAT_MAX); // Statistics for min and max + + psScalar tmpScalar; // Temporary scalar variable, for p_psVectorBinDisect + tmpScalar.type.type = PS_TYPE_F32; + + psF32 binSize = 1; + if (stats->options & PS_STAT_USE_BINSIZE) { + // Set initial bin size to the specified value. + binSize = stats->binsize; + psTrace("psLib.math", 6, "Setting initial robust bin size to %.2f\n", binSize); + } else { + // construct a histogram with (sigma/2 < binsize < sigma) + // set roughly so that the lowest bins have about 2 cnts + // Nsmallest ~ N50 / (4*dN)) + psF32 dN = PS_MAX (1, PS_MIN (4, stats->robustN50 / 8)); + binSize = guessStdev / dN; + } + + // Determine the min/max of the vector (which prior outliers masked out) + int numValid = vectorMinMax(myVector, mask, maskVal, statsMinMax); // Number of values + float min = statsMinMax->min; + float max = statsMinMax->max; + if (numValid == 0 || isnan(min) || isnan(max)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the min/max of the input vector.\n"); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // Calculate the number of bins. + // XXX can we calculate the binMin, binMax **before** building this histogram? + long numBins = (max - min) / binSize; + psTrace("psLib.math", 6, "The new min/max values are (%f, %f).\n", min, max); + psTrace("psLib.math", 6, "The new bin size is %f.\n", binSize); + psTrace("psLib.math", 6, "The numBins is %ld\n", numBins); + + psHistogram *histogram = psHistogramAlloc(min, max, numBins); // A new histogram (without outliers) + if (!psVectorHistogram(histogram, myVector, errors, mask, maskVal)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate histogram for fitted statistics v3.\n"); + psFree(histogram); + psFree(statsMinMax); + return false; + } + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(histogram->nums); + } + + // now fit a Gaussian to the upper and lower halves about the peak independently + + long binMin, binMax; + float upperMean, upperStdev; + + // set the full-range upper and lower limits + psF32 maxFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + maxFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->max)) { + maxFitSigma = fabs(stats->max); + } + + psF32 minFitSigma = 2.0; + if (isfinite(stats->clipSigma)) { + minFitSigma = fabs(stats->clipSigma); + } + if (isfinite(stats->min)) { + minFitSigma = fabs(stats->min); + } + + tmpScalar.data.F32 = guessMean - minFitSigma*guessStdev; + if (tmpScalar.data.F32 < min) { + binMin = 0; + } else { + binMin = p_psVectorBinDisect(histogram->bounds, &tmpScalar); + } + tmpScalar.data.F32 = guessMean + maxFitSigma*guessStdev; + if (tmpScalar.data.F32 > max) { + binMax = histogram->bounds->n; + } else { + binMax = p_psVectorBinDisect(histogram->bounds, &tmpScalar) + 1; + } + if (binMin < 0 || binMax < 0) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate the -%f sigma : +%f sigma bins\n", minFitSigma, maxFitSigma); + psFree(statsMinMax); + psFree(histogram); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // search for mode (peak of histogram within range mean-2sigma - mean+2sigma + long binPeak = binMin; + float valPeak = histogram->nums->data.F32[binPeak]; + for (int i = binMin; i < binMax; i++) { + if (histogram->nums->data.F32[i] > valPeak) { + binPeak = i; + valPeak = histogram->nums->data.F32[binPeak]; + } + } + + // assume a reasonably well-defined gaussian-like population; run from peak out until val < 0.25*peak + + psTrace("psLib.math", 6, "The clipped numBins is %ld\n", binMax - binMin); + psTrace("psLib.math", 6, "The clipped min is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMin), binMin); + psTrace("psLib.math", 6, "The clipped max is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binMax), binMax); + psTrace("psLib.math", 6, "The clipped peak is %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binPeak), binPeak); + + { + // fit the lower half of the distribution + // run down until we drop below 0.25*valPeak + long binS = binMin; + long binE = PS_MIN (binPeak + 3, binMax); + for (int i = binPeak-3; i >= binMin; i--) { + if (histogram->nums->data.F32[i] < 0.25*valPeak) { + binS = i; + break; + } + } + psTrace("psLib.math", 6, "Lower bound for lower half: %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binS), binS); + psTrace("psLib.math", 6, "Upper bound for lower half: %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binE), binE); + + psVector *y = psVectorAllocEmpty(binE - binS, PS_TYPE_F32); // Vector of coordinates + psVector *x = psVectorAllocEmpty(binE - binS, PS_TYPE_F32); // Vector of ordinates + long j = 0; + for (long i = binS; i < binE; i++) { + if (histogram->nums->data.F32[i] <= 0.0) + continue; + x->data.F32[j] = PS_BIN_MIDPOINT(histogram, i); + y->data.F32[j] = log(histogram->nums->data.F32[i]); // note this is the natural log: expected distribution is A exp(-(x-xo)^2/2sigma^2) + j++; + } + y->n = x->n = j; + + // fit 2nd order polynomial to ln(y) = -(x-xo)^2/2sigma^2 + psPolynomial1D *poly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + bool status = psVectorFitPolynomial1D (poly, NULL, 0, y, NULL, x); + psFree(x); + psFree(y); + + if (!status) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit a gaussian to the robust histogram.\n"); + psFree(poly); + psFree(histogram); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + if (poly->coeff[2] >= 0.0) { + psTrace("psLib.math", 6, "Failed parabolic fit: %f + %f x + %f x^2\n", poly->coeff[0], poly->coeff[1], poly->coeff[2]); + psFree(poly); + psFree(histogram); + psFree(statsMinMax); + + // sometimes, the guessStdev is much too large. in this case, the entire real population tends to be found + // in a single bin. make one attempt to recover by dropping the guessStdev down by a jump and trying again + if (iteration == 0) { + guessStdev = 0.25*guessStdev; + psTrace("psLib.math", 6, "*** retry stdev is %f.\n", guessStdev); + continue; + } + + psError(PS_ERR_UNKNOWN, false, "fit did not converge\n"); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // calculate lower mean & stdev from parabolic fit -- use this as the result + guessStdev = sqrt(-0.5/poly->coeff[2]); + guessMean = poly->coeff[1]*PS_SQR(guessStdev); + if (guessStdev > 0.75*stats->robustStdev) { + done = true; + } + psTrace("psLib.math", 6, "Parabolic Lower fit results: %f + %f x + %f x^2\n", poly->coeff[0], poly->coeff[1], poly->coeff[2]); + psTrace("psLib.math", 6, "The lower mean is %f.\n", guessMean); + psTrace("psLib.math", 6, "The lower stdev is %f.\n", guessStdev); + + psFree(poly); + } + + { + // fit the upper half of the distribution + // run up until we drop below 0.25*valPeak + long binS = PS_MAX (binPeak - 3, 0); + long binE = binMax; + for (int i = binPeak+3; i < binMax; i++) { + if (histogram->nums->data.F32[i] < 0.25*valPeak) { + binE = i; + break; + } + } + psTrace("psLib.math", 6, "Lower bound for upper half: %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binS), binS); + psTrace("psLib.math", 6, "Upper bound for upper half: %f (%ld)\n", PS_BIN_MIDPOINT(histogram, binE), binE); + + psVector *y = psVectorAllocEmpty(binE - binS, PS_TYPE_F32); // Vector of coordinates + psVector *x = psVectorAllocEmpty(binE - binS, PS_TYPE_F32); // Vector of ordinates + long j = 0; + for (long i = binS; i < binE; i++) { + if (histogram->nums->data.F32[i] <= 0.0) + continue; + x->data.F32[j] = PS_BIN_MIDPOINT(histogram, i); + y->data.F32[j] = log(histogram->nums->data.F32[i]); // note this is the natural log: expected distribution is A exp(-(x-xo)^2/2sigma^2) + j++; + } + y->n = x->n = j; + + // fit 2nd order polynomial to ln(y) = -(x-xo)^2/2sigma^2 + psPolynomial1D *poly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + bool status = psVectorFitPolynomial1D (poly, NULL, 0, y, NULL, x); + psFree(x); + psFree(y); + + if (!status) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit a gaussian to the robust histogram.\n"); + psFree(poly); + psFree(histogram); + psFree(statsMinMax); + psTrace("psLib.math", 4, "---- %s(false) end ----\n", __func__); + return false; + } + + // calculate upper mean & stdev from parabolic fit -- use this as the result + upperStdev = sqrt(-0.5/poly->coeff[2]); + upperMean = poly->coeff[1]*PS_SQR(upperStdev); + psTrace("psLib.math", 6, "Parabolic Upper fit results: %f + %f x + %f x^2\n", poly->coeff[0], poly->coeff[1], poly->coeff[2]); + psTrace("psLib.math", 6, "The upper mean is %f.\n", upperMean); + psTrace("psLib.math", 6, "The upper stdev is %f.\n", upperStdev); + + psFree (poly); + } + + // Clean up after fitting + psFree (histogram); + psFree (statsMinMax); + } + + // The fitted mean is the Gaussian mean. + stats->fittedMean = guessMean; + psTrace("psLib.math", 6, "The fitted mean is %f.\n", stats->fittedMean); + + // The fitted standard deviation + stats->fittedStdev = guessStdev; + psTrace("psLib.math", 6, "The fitted stdev is %f.\n", stats->fittedStdev); + + stats->results |= PS_STAT_FITTED_MEAN_V3; + stats->results |= PS_STAT_FITTED_STDEV_V3; + + return true; +} + + +/****************************************************************************** +vectorSmoothHistGaussian(): This routine smoothes the data in the input +robustHistogram with a Gaussian of width sigma. It returns a psVector of the +smoothed data. + +XXX this function is unused +*****************************************************************************/ +psVector *vectorSmoothHistGaussian(psHistogram *histogram, + psF32 sigma) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + psTrace("psLib.math", 5, "(histogram->nums->n, sigma) is (%d, %.2f\n", (int) histogram->nums->n, sigma); + PS_ASSERT_PTR_NON_NULL(histogram, NULL); + PS_ASSERT_PTR_NON_NULL(histogram->bounds, NULL); + PS_ASSERT_PTR_NON_NULL(histogram->nums, NULL); + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(histogram->nums); + } + + long numBins = histogram->nums->n; // Number of histogram bins + psVector *smooth = psVectorAlloc(numBins, PS_TYPE_F32); // Smoothed version of histogram bins + const psVector *bounds = histogram->bounds; // The bounds for the histogram bins + + if (!histogram->uniform) { + // + // We get here if the histogram is non-uniform. This code is not tested. + // However, it is also not used anywhere, yet. + // + psLogMsg(__func__, PS_LOG_WARN, "WARNING: vectorSmoothHistGaussian() on non-uniform histograms has not been tested or used.\n"); + + for (long i = 0; i < numBins; i++) { + // Determine the midpoint of bin i. + float iMid = PS_BIN_MIDPOINT(histogram, i); + + // + // We determine the bin numbers (jMin:jMax) corresponding to a + // range of data values surrounding iMid. The range is of size: + // 2*PS_GAUSS_WIDTH*sigma + long jMin, jMax; + psF32 x = iMid - (PS_GAUSS_WIDTH * sigma); + for (jMin = i; jMin > 0 && bounds->data.F32[jMin] > x; jMin--) + ; + x = iMid + (PS_GAUSS_WIDTH * sigma); + for (jMax = i; jMax < bounds->n - 1 && bounds->data.F32[jMax + 1] > x; jMax++) + ; + + // + // Loop from jMin to jMax, computing the gaussian of data i. + // + smooth->data.F32[i] = 0.0; + for (long j = jMin ; j <= jMax ; j++) { + float jMid = PS_BIN_MIDPOINT(histogram, j); + smooth->data.F32[i] += + histogram->nums->data.F32[j] * psGaussian(jMid, iMid, sigma, true); + } + } + } else { + // + // We get here if the histogram is uniform. + // + for (long i = 0; i < numBins; i++) { + psF32 binSize = bounds->data.F32[1] - bounds->data.F32[0]; + psS32 gaussWidth = ((PS_GAUSS_WIDTH * sigma) / binSize); + + // + // XXX: The following is wrong. However, in practice, the sigma was too + // large compared to the binSize. This meant that the smoothing was done + // over 500 bins in the robust stats algorithm. This mean that the smoothing + // took way too long. + // + #if 0 + + gaussWidth = 10; + #endif + // + // We determine the bin numbers (jMin:jMax) corresponding to a + // range of data values surrounding iMid. The range is of size: + // 2*PS_GAUSS_WIDTH*sigma + // + psS32 jMin = PS_MAX(i - gaussWidth, 0); + psS32 jMax = PS_MIN(i + gaussWidth, bounds->n - 1); + + // + // Loop from jMin to jMax, computing the gaussian of data i. + // + smooth->data.F32[i] = 0.0; + float iMid = PS_BIN_MIDPOINT(histogram, i); + for (long j = jMin ; j <= jMax ; j++) { + float jMid = PS_BIN_MIDPOINT(histogram, j); + smooth->data.F32[i] += + histogram->nums->data.F32[j] * psGaussian(jMid, iMid, sigma, true); + } + } + } + + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(smooth); + } + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return(smooth); +} + +/*****************************************************************************/ + +/* FUNCTION IMPLEMENTATION - PUBLIC */ + +/*****************************************************************************/ + +// We keep statsFree so that we can identify statistics pointers from the memblock +static void statsFree(psStats *newStruct) +{ + // There are non dynamic allocated items +} + +/****************************************************************************** + psStatsAlloc(): This routine must create a new psStats data structure. +*****************************************************************************/ +psStats* psStatsAlloc(psStatsOptions options) +{ + psTrace("psLib.math", 3,"---- %s() begin ----\n", __func__); + psStats* newStruct = NULL; + + newStruct = (psStats* ) psAlloc(sizeof(psStats)); + psMemSetDeallocator(newStruct, (psFreeFunc)statsFree); + newStruct->sampleMean = NAN; + newStruct->sampleMedian = NAN; + newStruct->sampleStdev = NAN; + newStruct->sampleUQ = NAN; + newStruct->sampleLQ = NAN; + newStruct->robustMedian = NAN; + newStruct->robustStdev = NAN; + newStruct->robustUQ = NAN; + newStruct->robustLQ = NAN; + newStruct->robustN50 = -1; + newStruct->fittedMean = NAN; + newStruct->fittedStdev = NAN; + newStruct->fittedNfit = -1; + newStruct->clippedMean = NAN; + newStruct->clippedStdev = NAN; + newStruct->clippedNvalues = -1; // XXX: This is never used + newStruct->clipSigma = 3.0; + newStruct->clipIter = 3; + newStruct->min = NAN; + newStruct->max = NAN; + newStruct->binsize = NAN; + newStruct->nSubsample = 100000; + newStruct->options = options; + + psTrace("psLib.math", 3, "---- %s() end ----\n", __func__); + return (newStruct); +} + + +bool psMemCheckStats(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)statsFree ); +} + +/****************************************************************************** +psVectorStats(in, mask, maskVal, stats): this is the public API +function which calls the above private stats functions based on what bits +were set in stats->options. + +Inputs + in + mask + maskVal + stats +Returns + The stats structure. + +XXX: Should we free stats if the asserts fail? NO; we don't own it (RHL). +*****************************************************************************/ +bool psVectorStats(psStats* stats, + const psVector* in, + const psVector* errors, + const psVector* mask, + psMaskType maskVal) +{ + psTrace("psLib.math", 3,"---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(stats, NULL); + PS_ASSERT_VECTOR_NON_NULL(in, NULL); + if (mask) { + PS_ASSERT_VECTORS_SIZE_EQUAL(mask, in, stats); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, stats); + } + if (errors) { + PS_ASSERT_VECTORS_SIZE_EQUAL(errors, in, stats); + PS_ASSERT_VECTOR_TYPE(errors, in->type.type, stats); + } + + // Convert types, as necessary + psVector *inF32 = NULL; // Input vector of values, F32 version + if (in->type.type == PS_TYPE_F32) { + inF32 = psMemIncrRefCounter((psPtr)in); + } else { + inF32 = psVectorCopy(NULL, in, PS_TYPE_F32); + } + psVector *errorsF32 = NULL; // Input vector of errors, F32 version + if (errors) { + if (errors->type.type == PS_TYPE_F32) { + errorsF32 = psMemIncrRefCounter((psPtr)errors); + } else { + errorsF32 = psVectorCopy(NULL, errors, PS_TYPE_F32); + } + } + psVector *maskU8 = NULL; // Input mask vector, U8 version + if (mask) { + if (mask->type.type == PS_TYPE_MASK) { + maskU8 = psMemIncrRefCounter((psPtr)mask); + } else { + maskU8 = psVectorCopy(NULL, mask, PS_TYPE_MASK); + } + } + + if ((stats->options & PS_STAT_USE_RANGE) && (stats->min >= stats->max)) { + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(stats->max, stats->min, stats); + } + + if ((stats->options & PS_STAT_USE_BINSIZE) && (stats->min >= stats->max)) { + PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(stats->binsize, 0.0, stats); + } + + // init the value of stats->results: this is used internally to check if + // prior functions have been called + stats->results = PS_STAT_NONE; + bool status = true; + + // ************************************************************************ + if (stats->options & PS_STAT_SAMPLE_MEAN) { + if (!vectorSampleMean(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate vector sample mean"); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_QUARTILE)) { + if (!vectorSampleMedian(inF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate sample median"); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & PS_STAT_SAMPLE_STDEV) { + if (!vectorSampleStdev(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate sample stdev"); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_MAX | PS_STAT_MIN)) { + if (vectorMinMax(inF32, maskU8, maskVal, stats) == 0) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate vector minimum and maximum"); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_ROBUST_QUARTILE)) { + if (!vectorRobustStats(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to calculate robust statistics")); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV)) { + if (!vectorFittedStats(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to calculate fitted statistics")); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2)) { + if (stats->options & (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV)) { + psAbort("you may not specify both FITTED_MEAN and FITTED_MEAN_V2"); + } + if (!vectorFittedStats_v2(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to calculate fitted statistics")); + status &= false; + } + } + + // ************************************************************************ + if (stats->options & (PS_STAT_FITTED_MEAN_V3 | PS_STAT_FITTED_STDEV_V3)) { + if (stats->options & (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV)) { + psAbort("you may not specify both FITTED_MEAN and FITTED_MEAN_V3"); + } + if (!vectorFittedStats_v3(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, _("Failed to calculate fitted statistics")); + status &= false; + } + } + + // ************************************************************************ + if ((stats->options & PS_STAT_CLIPPED_MEAN) || (stats->options & PS_STAT_CLIPPED_STDEV)) { + if (!vectorClippedStats(inF32, errorsF32, maskU8, maskVal, stats)) { + psError(PS_ERR_UNKNOWN, false, "Failed to calculate clipped statistics\n"); + status &= false; + } + } + + psFree(inF32); + psFree(errorsF32); + psFree(maskU8); + psTrace("psLib.math", 3,"---- %s() end ----\n", __func__); + return (status); +} + +psStatsOptions psStatsOptionFromString(const char *string) +{ + #define READ_STAT(NAME, SYMBOL) \ + if (strcasecmp(string, NAME) == 0) { \ + return SYMBOL; \ + } + + READ_STAT("MEAN", PS_STAT_SAMPLE_MEAN); + READ_STAT("STDEV", PS_STAT_SAMPLE_STDEV); + READ_STAT("MEDIAN", PS_STAT_SAMPLE_MEDIAN); + READ_STAT("QUARTILE", PS_STAT_SAMPLE_QUARTILE); + READ_STAT("SAMPLE_MEAN", PS_STAT_SAMPLE_MEAN); + READ_STAT("SAMPLE_STDEV", PS_STAT_SAMPLE_STDEV); + READ_STAT("SAMPLE_MEDIAN", PS_STAT_SAMPLE_MEDIAN); + READ_STAT("SAMPLE_QUARTILE", PS_STAT_SAMPLE_QUARTILE); + READ_STAT("ROBUST", PS_STAT_ROBUST_MEDIAN); + READ_STAT("ROBUST_MEDIAN", PS_STAT_ROBUST_MEDIAN); + READ_STAT("ROBUST_STDEV", PS_STAT_ROBUST_STDEV); + READ_STAT("ROBUST_QUARTILE", PS_STAT_ROBUST_QUARTILE); + READ_STAT("FITTED", PS_STAT_FITTED_MEAN); + READ_STAT("FITTED_MEAN", PS_STAT_FITTED_MEAN); + READ_STAT("FITTED_STDEV", PS_STAT_FITTED_STDEV); + READ_STAT("FITTED_V2", PS_STAT_FITTED_MEAN_V2); + READ_STAT("FITTED_MEAN_V2", PS_STAT_FITTED_MEAN_V2); + READ_STAT("FITTED_STDEV_V2", PS_STAT_FITTED_STDEV_V2); + READ_STAT("FITTED_V3", PS_STAT_FITTED_MEAN_V3); + READ_STAT("FITTED_MEAN_V3", PS_STAT_FITTED_MEAN_V3); + READ_STAT("FITTED_STDEV_V3", PS_STAT_FITTED_STDEV_V3); + READ_STAT("CLIPPED", PS_STAT_CLIPPED_MEAN); + READ_STAT("CLIPPED_MEAN", PS_STAT_CLIPPED_MEAN); + READ_STAT("CLIPPED_STDEV", PS_STAT_CLIPPED_STDEV); + + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Unable to parse statistic: %s\n", string); + return 0; +} + +psString psStatsOptionToString(psStatsOptions option) +{ + psString string = NULL; // String to return + + #define WRITE_STAT(NAME, SYMBOL) \ + if (option & SYMBOL) { \ + psStringAppend(&string, "%s ", NAME); \ + } + + // Same list as above (for psStatsFromString), but with repeat symbols removed + WRITE_STAT("SAMPLE_MEAN", PS_STAT_SAMPLE_MEAN); + WRITE_STAT("SAMPLE_STDEV", PS_STAT_SAMPLE_STDEV); + WRITE_STAT("SAMPLE_MEDIAN", PS_STAT_SAMPLE_MEDIAN); + WRITE_STAT("SAMPLE_QUARTILE", PS_STAT_SAMPLE_QUARTILE); + WRITE_STAT("ROBUST_MEDIAN", PS_STAT_ROBUST_MEDIAN); + WRITE_STAT("ROBUST_STDEV", PS_STAT_ROBUST_STDEV); + WRITE_STAT("ROBUST_QUARTILE", PS_STAT_ROBUST_QUARTILE); + WRITE_STAT("FITTED_MEAN", PS_STAT_FITTED_MEAN); + WRITE_STAT("FITTED_STDEV", PS_STAT_FITTED_STDEV); + WRITE_STAT("FITTED_MEAN_V2", PS_STAT_FITTED_MEAN_V2); + WRITE_STAT("FITTED_STDEV_V2", PS_STAT_FITTED_STDEV_V2); + WRITE_STAT("FITTED_MEAN_V3", PS_STAT_FITTED_MEAN_V3); + WRITE_STAT("FITTED_STDEV_V3", PS_STAT_FITTED_STDEV_V3); + WRITE_STAT("CLIPPED_MEAN", PS_STAT_CLIPPED_MEAN); + WRITE_STAT("CLIPPED_STDEV", PS_STAT_CLIPPED_STDEV); + + return string; +} + +psStats *psStatsFromString(const char *string) +{ + psList *subStrings = psStringSplit(string, " ,;", false); // List of sub-strings + if (!subStrings || psListLength(subStrings) == 0) { + // Nothing here + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "No string to parse for statistics: %s\n", string); + psFree(subStrings); + return NULL; + } + psStats *stats = psStatsAlloc(0); // Generate empty stats structure + psListIterator *iterator = psListIteratorAlloc(subStrings, PS_LIST_HEAD, false); // Iterator + psString statString; // Statistic string, from iteration + while ((statString = psListGetAndIncrement(iterator))) { + psStatsOptions option = psStatsOptionFromString(statString); + if (option == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to interpret statistic option: %s --- ignored.\n", + statString); + continue; + } + stats->options |= option; + } + psFree(iterator); + psFree(subStrings); + return stats; +} + +psString psStatsToString(const psStats *stats) +{ + return psStatsOptionToString(stats->options); +} + +inline psStatsOptions psStatsSingleOption(psStatsOptions option) +{ + switch (option & ~(PS_STAT_USE_RANGE | PS_STAT_USE_BINSIZE)) { + case PS_STAT_SAMPLE_MEAN: + case PS_STAT_SAMPLE_MEDIAN: + case PS_STAT_SAMPLE_STDEV: + case PS_STAT_SAMPLE_QUARTILE: + case PS_STAT_ROBUST_MEDIAN: + case PS_STAT_ROBUST_STDEV: + case PS_STAT_ROBUST_QUARTILE: + case PS_STAT_FITTED_MEAN: + case PS_STAT_FITTED_STDEV: + case PS_STAT_FITTED_MEAN_V2: + case PS_STAT_FITTED_STDEV_V2: + case PS_STAT_FITTED_MEAN_V3: + case PS_STAT_FITTED_STDEV_V3: + case PS_STAT_CLIPPED_MEAN: + case PS_STAT_CLIPPED_STDEV: + case PS_STAT_MAX: + case PS_STAT_MIN: + return option & ~(PS_STAT_USE_RANGE | PS_STAT_USE_BINSIZE); + default: + return 0; + } + psAbort("Should never get here.\n"); + return 0; +} + +inline double psStatsGetValue(const psStats *stats, psStatsOptions option) +{ + // We could call psStatsSingle to check, but it would be a waste since we effectively do it anyway + switch (option & ~(PS_STAT_USE_RANGE | PS_STAT_USE_BINSIZE)) { + case PS_STAT_SAMPLE_MEAN: + return stats->sampleMean; + case PS_STAT_SAMPLE_MEDIAN: + return stats->sampleMedian; + case PS_STAT_SAMPLE_STDEV: + return stats->sampleStdev; + case PS_STAT_ROBUST_MEDIAN: + return stats->robustMedian; + case PS_STAT_ROBUST_STDEV: + return stats->robustStdev; + case PS_STAT_FITTED_MEAN: + return stats->fittedMean; + case PS_STAT_FITTED_STDEV: + return stats->fittedStdev; + case PS_STAT_FITTED_MEAN_V2: + return stats->fittedMean; + case PS_STAT_FITTED_STDEV_V2: + return stats->fittedStdev; + case PS_STAT_FITTED_MEAN_V3: + return stats->fittedMean; + case PS_STAT_FITTED_STDEV_V3: + return stats->fittedStdev; + case PS_STAT_CLIPPED_MEAN: + return stats->clippedMean; + case PS_STAT_CLIPPED_STDEV: + return stats->clippedStdev; + case PS_STAT_MAX: + return stats->max; + case PS_STAT_MIN: + return stats->min; + case PS_STAT_SAMPLE_QUARTILE: + case PS_STAT_ROBUST_QUARTILE: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Cannot return a single quartile value; " + "get them yourself.\n"); + return NAN; + default: + return NAN; + } + psAbort("Should never get here.\n"); + return NAN; +} + +// other private functions used above + +static psF32 QuadraticInverse(psF32 a, + psF32 b, + psF32 c, + psF32 y, + psF32 xLo, + psF32 xHi + ) +{ + psF64 tmp = sqrt((y - c)/a + (b*b)/(4.0 * a * a)); + + psF64 x1 = -b/(2.0*a) + tmp; + psF64 x2 = -b/(2.0*a) - tmp; + + if (xLo <= x1 && x1 <= xHi) { + return x1; + } + if (xLo <= x2 && x2 <= xHi) { + return x2; + } + return 0.5 * (xLo + xHi); +} + + +/****************************************************************************** +fitQuadraticSearchForYThenReturnX(*xVec, *yVec, binNum, yVal): A general +routine which fits a quadratic to three points and returns the x-value +corresponding to the input y-value. This routine takes psVectors of x/y pairs +as input, and fits a quadratic to the 3 points surrounding element binNum in +the vectors (the midpoint between element i and i+1 is used for x[i]). It +then determines for what value x does that quadratic f(x) = yVal (the input +parameter). + +*****************************************************************************/ +static psF32 fitQuadraticSearchForYThenReturnX(const psVector *xVec, + psVector *yVec, + psS32 binNum, + psF32 yVal + ) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + psTrace("psLib.math", 5, "binNum, yVal is (%d, %f)\n", binNum, yVal); + if (psTraceGetLevel("psLib.math") >= 8) { + PS_VECTOR_PRINT_F32(xVec); + PS_VECTOR_PRINT_F32(yVec); + } + + PS_ASSERT_VECTOR_NON_NULL(xVec, NAN); + PS_ASSERT_VECTOR_NON_NULL(yVec, NAN); + PS_ASSERT_VECTOR_TYPE(xVec, PS_TYPE_F32, NAN); + PS_ASSERT_VECTOR_TYPE(yVec, PS_TYPE_F32, NAN); + // PS_ASSERT_VECTORS_SIZE_EQUAL(xVec, yVec, NAN); + PS_ASSERT_INT_WITHIN_RANGE(binNum, 0, (int)(xVec->n - 1), NAN); + PS_ASSERT_INT_WITHIN_RANGE(binNum, 0, (int)(yVec->n - 1), NAN); + + psVector *x = psVectorAlloc(3, PS_TYPE_F64); + psVector *y = psVectorAlloc(3, PS_TYPE_F64); + psF32 tmpFloat = 0.0f; + + if ((binNum >= 1) && (binNum < (yVec->n - 2)) && (binNum < (xVec->n - 2))) { + // The general case. We have all three points. + x->data.F64[0] = (psF64) (0.5 * (xVec->data.F32[binNum - 1] + xVec->data.F32[binNum])); + x->data.F64[1] = (psF64) (0.5 * (xVec->data.F32[binNum] + xVec->data.F32[binNum+1])); + x->data.F64[2] = (psF64) (0.5 * (xVec->data.F32[binNum+1] + xVec->data.F32[binNum+2])); + y->data.F64[0] = yVec->data.F32[binNum - 1]; + y->data.F64[1] = yVec->data.F32[binNum]; + y->data.F64[2] = yVec->data.F32[binNum + 1]; + psTrace("psLib.math", 6, "x vec (orig) is (%f %f %f %f)\n", xVec->data.F32[binNum - 1], + xVec->data.F32[binNum], xVec->data.F32[binNum+1], xVec->data.F32[binNum+2]); + psTrace("psLib.math", 6, "x data is (%f %f %f)\n", x->data.F64[0], x->data.F64[1], x->data.F64[2]); + psTrace("psLib.math", 6, "y data is (%f %f %f)\n", y->data.F64[0], y->data.F64[1], y->data.F64[2]); + + // + // Ensure that the y value lies within range of the y values. + // + if (! (((y->data.F64[0] <= yVal) && (yVal <= y->data.F64[2])) || + ((y->data.F64[2] <= yVal) && (yVal <= y->data.F64[0]))) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified yVal, %g, is not within y-range, %g to %g."), + (psF64)yVal, y->data.F64[0], y->data.F64[2]); + } + + // + // Ensure that the y values are monotonic. + // + if (((y->data.F64[0] < y->data.F64[1]) && !(y->data.F64[1] <= y->data.F64[2])) || + ((y->data.F64[0] > y->data.F64[1]) && !(y->data.F64[1] >= y->data.F64[2]))) { + psError(PS_ERR_UNKNOWN, true, + "This routine must be called with monotonically increasing or decreasing data points.\n"); + psFree(x); + psFree(y); + psTrace("psLib.math", 5, "---- %s() end ----\n", __func__); + return NAN; + } + + // Determine the coefficients of the polynomial. + psPolynomial1D *myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + if (!psVectorFitPolynomial1D(myPoly, NULL, 0, y, NULL, x)) { + psError(PS_ERR_UNEXPECTED_NULL, false, + _("Failed to fit a 1-dimensional polynomial to the three specified data points. Returning NAN.")); + psFree(x); + psFree(y); + psTrace("psLib.math", 5, "---- %s(NAN) end ----\n", __func__); + return NAN; + } + psTrace("psLib.math", 6, "myPoly->coeff[0] is %f\n", myPoly->coeff[0]); + psTrace("psLib.math", 6, "myPoly->coeff[1] is %f\n", myPoly->coeff[1]); + psTrace("psLib.math", 6, "myPoly->coeff[2] is %f\n", myPoly->coeff[2]); + psTrace("psLib.math", 6, "Fitted y vec is (%f %f %f)\n", + (psF32) psPolynomial1DEval(myPoly, (psF64) x->data.F64[0]), + (psF32) psPolynomial1DEval(myPoly, (psF64) x->data.F64[1]), + (psF32) psPolynomial1DEval(myPoly, (psF64) x->data.F64[2])); + + psTrace("psLib.math", 6, "We fit the polynomial, now find x such that f(x) equals %f\n", yVal); + tmpFloat = QuadraticInverse(myPoly->coeff[2], myPoly->coeff[1], myPoly->coeff[0], yVal, + x->data.F64[0], x->data.F64[2]); + psFree(myPoly); + + if (isnan(tmpFloat)) { + psError(PS_ERR_UNEXPECTED_NULL, + false, _("Failed to determine the median of the fitted polynomial. Returning NAN.")); + psFree(x); + psFree(y); + psTrace("psLib.math", 5, "---- %s(NAN) end ----\n", __func__); + return(NAN); + } + } else { + // These are special cases where the bin is at the beginning or end of the vector. + if (binNum == 0) { + // We have two points only at the beginning of the vectors x and y. + tmpFloat = 0.5 * (xVec->data.F32[binNum] + + xVec->data.F32[binNum + 1]); + } else if (binNum == (xVec->n - 1)) { + // The special case where we have two points only at the end of + // the vectors x and y. + // XXX: Is this right? + tmpFloat = xVec->data.F32[binNum]; + } else if (binNum == (xVec->n - 2)) { + // XXX: Is this right? + tmpFloat = 0.5 * (xVec->data.F32[binNum] + xVec->data.F32[binNum + 1]); + } + } + + psTrace("psLib.math", 6, "FIT: return %f\n", tmpFloat); + psFree(x); + psFree(y); + + psTrace("psLib.math", 5, "---- %s(%f) end ----\n", __func__, tmpFloat); + return tmpFloat; +} + +/****************************************************************************** +NOTE: We assume unnormalized gaussians. +*****************************************************************************/ +static psF32 minimizeLMChi2Gauss1D(psVector *deriv, + const psVector *params, + const psVector *coords + ) +{ + psTrace("psLib.math", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_VECTOR_NON_NULL(params, NAN); + PS_ASSERT_VECTOR_SIZE(params, (long)2, NAN); + PS_ASSERT_VECTOR_TYPE(params, PS_TYPE_F32, NAN); + PS_ASSERT_VECTOR_NON_NULL(coords, NAN); + PS_ASSERT_VECTOR_SIZE(coords, (long)1, NAN); + PS_ASSERT_VECTOR_TYPE(coords, PS_TYPE_F32, NAN); + + psF32 x = coords->data.F32[0]; + psF32 mean = params->data.F32[0]; + psF32 var = params->data.F32[1]; + psF32 dx = (x - mean); + + psF32 gauss = exp (-0.5*PS_SQR(dx)/var); + if (deriv) { + PS_ASSERT_VECTOR_SIZE(deriv, (long)2, NAN); + PS_ASSERT_VECTOR_TYPE(deriv, PS_TYPE_F32, NAN); + psF32 tmp = dx * gauss; + deriv->data.F32[0] = tmp / var; + deriv->data.F32[1] = tmp * dx / (var * var); + } + + + psTrace("psLib.math", 4, "---- %s() end ----\n", __func__); + return gauss; +} Index: /branches/rel-1-1/psLib/src/math/psStats.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psStats.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psStats.h (revision 12167) @@ -0,0 +1,159 @@ +/* @file psStats.h + * @brief basic statistical operations + * + * This file will hold the definition of the histogram and stats data + * structures. It also contains prototypes for procedures which operate + * on those data structures. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.59 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_STATS_H +#define PS_STATS_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/****************************************************************************** + Statistical functions and data structures. + *****************************************************************************/ + +/** enumeration of statistical calculation options + * + * @see psStats, psVectorStats, psImageStats + */ +typedef enum { + PS_STAT_NONE = 0x000000, ///< Empty set + PS_STAT_SAMPLE_MEAN = 0x000001, ///< Sample Mean + PS_STAT_SAMPLE_MEDIAN = 0x000002, ///< Sample Median + PS_STAT_SAMPLE_STDEV = 0x000004, ///< Sample Standard Deviation + PS_STAT_SAMPLE_QUARTILE = 0x000008, ///< Sample Quartile + PS_STAT_ROBUST_MEDIAN = 0x000010, ///< Robust Median + PS_STAT_ROBUST_STDEV = 0x000020, ///< Robust Standarad Deviation + PS_STAT_ROBUST_QUARTILE = 0x000040, ///< Robust Quartile + PS_STAT_FITTED_MEAN = 0x000080, ///< Fitted Mean + PS_STAT_FITTED_STDEV = 0x000100, ///< Fitted Standard Deviation + PS_STAT_CLIPPED_MEAN = 0x000200, ///< Clipped Mean + PS_STAT_CLIPPED_STDEV = 0x000400, ///< Clipped Standard Deviation + PS_STAT_MAX = 0x000800, ///< Maximum + PS_STAT_MIN = 0x001000, ///< Minumum + PS_STAT_USE_RANGE = 0x002000, ///< Range + PS_STAT_USE_BINSIZE = 0x004000, ///< Binsize + PS_STAT_FITTED_MEAN_V2 = 0x008000, ///< Fitted Mean + PS_STAT_FITTED_STDEV_V2 = 0x010000, ///< Fitted Standard Deviation + PS_STAT_FITTED_MEAN_V3 = 0x020000, ///< Fitted Mean + PS_STAT_FITTED_STDEV_V3 = 0x040000, ///< Fitted Standard Deviation +} psStatsOptions; + +/** This is the generic statistics structure. It contails the data members + for the various statistic values. It also contains the options member to + specifiy which statistics should be calculated. */ +typedef struct +{ + double sampleMean; ///< formal mean of sample + double sampleMedian; ///< formal median of sample + double sampleStdev; ///< standard deviation of sample + double sampleUQ; ///< upper quartile of sample + double sampleLQ; ///< lower quartile of sample + double robustMedian; ///< robust median of array + double robustStdev; ///< robust standard deviation of array + double robustUQ; ///< robust upper quartile + double robustLQ; ///< robust lower quartile + long robustN50; ///< Number of points in Gaussian fit; XXX: This is currently unused. + double fittedMean; ///< robust mean of data + double fittedStdev; ///< robust standard deviation of data + long fittedNfit; ///< Number of points in Gaussian fit; XXX: This is currently unused + double clippedMean; ///< Nsigma clipped mean + double clippedStdev; ///< standard deviation after clipping + long clippedNvalues; ///< Number of data points used for clipped mean. + double clipSigma; ///< Nsigma used for clipping; user input + int clipIter; ///< Number of clipping iterations; user input + double min; ///< minimum data value in array + double max; ///< maximum data value in array + double binsize; ///< binsize for robust fit (input/ouput) + long nSubsample; ///< maxinum number of measurements (input) + psStatsOptions options; ///< bitmask of values requested + psStatsOptions results; ///< bitmask of values calculated +} +psStats; + +/** Performs statistical calculations on a vector. + * + * @return psStats* the statistical results as specified by stats->options + */ +bool psVectorStats( + psStats* stats, ///< stats structure defines stats to be calculated and how + const psVector* in, ///< Vector to be analysed. + const psVector* errors, ///< Errors. + const psVector* mask, ///< Ignore elements where (maskVector & maskVal) != 0: must be INT or NULL + psMaskType maskVal ///< Only mask elements with one of these bits set in maskVector +); + +/** Allocator of the psStats structure. + * + * @return psStats* A new psStats struct with the options member set to the + * value given. + */ +psStats* psStatsAlloc( + psStatsOptions options ///< Statistics to calculate +); + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psStats structure, false otherwise. + */ +bool psMemCheckStats( + psPtr ptr ///< the pointer whose type to check +); + +// Get the statistics option from a string +psStatsOptions psStatsOptionFromString(const char *string); +// Write a string from the statistics options +psString psStatsOptionToString(psStatsOptions option); +// Generate a psStats from a string of statistics options +psStats *psStatsFromString(const char *string); +// Generate a string of statistics options from a psStats +psString psStatsToString(const psStats *stats); +// Is only a single statistics option set? +psStatsOptions psStatsSingleOption(psStatsOptions option); +// Return a particular stats value +double psStatsGetValue(const psStats *stats, psStatsOptions option); + +/// @} +#endif // #ifndef PS_STATS_H + +/* + * private stats functions used in psStats.c: + * + * vectorSampleMean + (none) + * vectorMinMax + (none) + * vectorSampleMedian (also yields SAMPLE_QUARTILE) + (none) + * vectorSampleStdev + (vectorSampleMean) + * vectorClippedStats + (vectorSampleMedian) + (vectorSampleMean (*also subset)) + (vectorSampleStdev (*also subset)) + * vectorRobustStats + (vectorMinMax (*only subset)) + * vectorFittedStats + (vectorRobustStats) + + * private stats functions called by other private stats functions are automatically called by + * those functions. since they set the stats->results flags, they are not called multiple + * times. + + * the private stats functions do not test for their corresponding stats flags: it is not + * necessary to request them if they are called within this function. + +*/ Index: /branches/rel-1-1/psLib/src/math/psUnaryOp.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psUnaryOp.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psUnaryOp.c (revision 12167) @@ -0,0 +1,360 @@ +/** @file psUnary.c + * + * @brief Provides unary functions for simple matrix and vector element operations. Functions + * include: + * + * Addition (+) + * Subtraction (-) + * Multiplication (*) + * Division (/) + * Power (^) + * Minimum (min) + * Maximum (max) + * Absolute value (abs) + * Exponent (exp) + * Natural Log (ln) + * Power of 10 (ten) + * Log (log) + * Square root (sqrt) + * Sine (sin or dsin) + * Cosine (cos or dcos) + * Tangent (tan or dtan) + * Arcsine (asin or dasin) + * Arccosine (acos or dacos) + * Arctan (atan or datan) + * + * Currently only vector-vector and image-image binary operations are supported. + * + * @ingroup MatrixArithmetic + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-09 22:38:53 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/****************************************************************************** + * INCLUDE FILES * + ******************************************************************************/ +#include +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psImage.h" +#include "psVector.h" +#include "psScalar.h" +#include "psLogMsg.h" +#include "psAssert.h" + + +/***************************************************************************** + * FUNCTION IMPLEMENTATION - LOCAL * + *****************************************************************************/ + +// Conversion for degrees to radians +#define D2R 0.01745329252111111 /* PI/180 */ + +// Conversion for radians to degrees +#define R2D 57.29577950924861 /* 180.0/PI */ + + +// Unary SCALAR operations +#define SCALAR(OUT,IN,OP,TYPE) \ +{ \ + ps##TYPE *o = &((psScalar*)OUT)->data.TYPE; \ + ps##TYPE *i1 = &((psScalar*)IN)->data.TYPE; \ + *o = OP; \ +} + +// Unary IMAGE operations +#define VECTOR(OUT,IN,OP,TYPE) \ +{ \ + long nIn = ((psVector*)IN)->n; \ + long nOut = ((psVector*)OUT)->n; \ + if (nIn != nOut) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Number of elements inconsistent, %ld vs %ld. Number of elements must match."), nIn, nOut); \ + if (OUT != IN) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + ps##TYPE *o = ((psVector*)OUT)->data.TYPE; \ + ps##TYPE *i1 = ((psVector*)IN)->data.TYPE; \ + for (long i = 0; i < nIn; i++, o++, i1++) { \ + *o = OP; \ + } \ +} + +// Unary IMAGE operations +#define IMAGE(OUT,IN,OP,TYPE) \ +{ \ + long numRowsIn = ((psImage*)IN)->numRows; \ + long numColsIn = ((psImage*)IN)->numCols; \ + long numRowsOut = ((psImage*)OUT)->numRows; \ + long numColsOut = ((psImage*)OUT)->numCols; \ + if(numRowsIn!=numRowsOut || numColsIn!=numColsOut) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Specified psImage dimensions differed, %ldx%ld vs %ldx%ld."), \ + numColsIn, numRowsIn, numColsOut, numRowsOut); \ + if (OUT != IN) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ + for (long j = 0; j < numRowsIn; j++) { \ + ps##TYPE *o = ((psImage* )OUT)->data.TYPE[j]; \ + ps##TYPE *i1 = ((psImage* )IN)->data.TYPE[j]; \ + for (long i = 0; i < numColsIn; i++, o++, i1++) { \ + *o = OP; \ + } \ + }\ +} + +// Preprocessor macro function to create arithmetic function based on input type +#define UNARY_TYPE(DIM,OUT,IN,OP) \ +switch (IN->type) { \ +case PS_TYPE_S32: \ + DIM(OUT,IN,OP,S32); \ + break; \ +case PS_TYPE_F32: \ + DIM(OUT,IN,OP,F32); \ + break; \ +case PS_TYPE_F64: \ + DIM(OUT,IN,OP,F64); \ + break; \ +case PS_TYPE_C32: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_S8: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_U8: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_S16: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_U16: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_U32: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_S64: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_U64: \ + DIM(OUT,IN,OP,C32); \ + break; \ +case PS_TYPE_C64: \ + DIM(OUT,IN,OP,C32); \ + break; \ +default: { \ + char* strType; \ + PS_TYPE_NAME(strType, IN->type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, _("Specified data type, %s, is not supported."), strType); \ + if (OUT != IN) { \ + psFree(OUT); \ + } \ + return NULL; \ + } \ +} + +// Preprocessor macro function to create arithmetic function operation name. Functions below that add +// FLT_EPSILON are done so to align results with a 64 bit computing architecture +#define UNARY_OP(DIM,OUT,IN,OP) \ +if(!strncmp(OP, "abs", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,cabs((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,fabs((double)*i1)); \ + } \ +} else if(!strncmp(OP, "sqrt", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,csqrt((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,sqrt((double)*i1)); \ + } \ +} else if(!strncmp(OP, "exp", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,cexp((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,exp((double)*i1)); \ + } \ +} else if(!strncmp(OP, "ln", 2)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,clog((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,log((double)*i1)); \ + } \ +} else if(!strncmp(OP, "ten", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,cpow(10.0,(double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,pow(10.0,(double)*i1)); \ + } \ +} else if(!strncmp(OP, "log", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,clog((double complex)*i1)/log(10.0)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,log10((double)*i1)); \ + } \ +} else if(!strncmp(OP, "sin", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,csin((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,sin((double)*i1)); \ + } \ +} else if(!strncmp(OP, "dsin", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,csin((double complex)*i1*D2R)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,sin((double)*i1*D2R)); \ + } \ +} else if(!strncmp(OP, "cos", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,ccos((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,cos((double)*i1)); \ + } \ +} else if(!strncmp(OP, "dcos", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,ccos((double complex)*i1*D2R)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,cos((double)*i1*D2R)); \ + } \ +} else if(!strncmp(OP, "tan", 3)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,ctan((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,tan((double)*i1)); \ + } \ +} else if(!strncmp(OP, "dtan", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,ctan((double complex)*i1*D2R)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,tan((double)*i1*D2R)); \ + } \ +} else if(!strncmp(OP, "asin", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,casin((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,asin((double)*i1)); \ + } \ +} else if(!strncmp(OP, "dasin", 5)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,R2D*casin((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,(R2D*asin((double)*i1))); \ + } \ +} else if(!strncmp(OP, "acos", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,cacos((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,acos((double)*i1)); \ + } \ +} else if(!strncmp(OP, "dacos", 5)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,R2D*cacos((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,R2D*acos((double)*i1)); \ + } \ +} else if(!strncmp(OP, "atan", 4)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,catan((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,atan((double)*i1)); \ + } \ +} else if(!strncmp(OP, "datan", 5)) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IN->type)) { \ + UNARY_TYPE(DIM,OUT,IN,R2D*catan((double complex)*i1)); \ + } else { \ + UNARY_TYPE(DIM,OUT,IN,R2D*atan((double)*i1)); \ + } \ +} else { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified operation, %s, is not supported."), OP); \ + if (OUT != IN) { \ + psFree(OUT); \ + } \ + return NULL; \ +} + +psMathType* psUnaryOp(psPtr out, const psPtr in, const char *op) +{ + #define psUnaryOp_EXIT { \ + if (out != in) { \ + psFree(out); \ + } \ + return NULL; \ + } + + psMathType* psTypeIn = (psMathType* ) in; + + PS_ASSERT_GENERAL_PTR_NON_NULL(in, psUnaryOp_EXIT); + PS_ASSERT_GENERAL_PTR_NON_NULL(op, psUnaryOp_EXIT); + + switch (psTypeIn->dimen) { + case PS_DIMEN_SCALAR: + if (out == NULL || + ((psMathType*)out)->dimen != PS_DIMEN_SCALAR || + ((psScalar*)out)->type.type != psTypeIn->type) { + psFree(out); + out = psScalarAlloc(0.0, psTypeIn->type); + } + UNARY_OP(SCALAR, out, psTypeIn, op); // scalar + break; + case PS_DIMEN_VECTOR: + case PS_DIMEN_TRANSV: + if (((psVector*)in)->n == 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Input psVector contains no elements. No data to perform operation with.")); + psUnaryOp_EXIT; + } + + out = psVectorRecycle(out, ((psVector*)in)->n, psTypeIn->type); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, _("Couldn't create a proper output psVector.")); + psUnaryOp_EXIT; + } + ((psVector*)out)->n = ((psVector*)in)->n; + + UNARY_OP(VECTOR, out, psTypeIn, op); // vector + break; + case PS_DIMEN_IMAGE: + if (((psImage* ) in)->numCols == 0 || ((psImage* ) in)->numRows == 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Input psImage contains no pixels. No data to perform operation with.")); + psUnaryOp_EXIT; + } + + out = psImageRecycle(out, ((psImage*)in)->numCols, ((psImage*)in)->numRows, psTypeIn->type); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, _("Couldn't create a proper output psImage.")); + psUnaryOp_EXIT; + } + + UNARY_OP(IMAGE, out, psTypeIn, op); // image + break; + default: + if (out != in) { + psFree(out); + } + psError(PS_ERR_BAD_PARAMETER_SIZE, true, _("Specified parameter, %s, has invalid dimensionality, %d."), "in", psTypeIn->dimen); + psUnaryOp_EXIT; + } + + // Automtically free psScalar types, since they are usually allocated in the argument list when this + // function is called, provided that the input is not the output. + if (psTypeIn->dimen == PS_DIMEN_SCALAR && in!=out) { + psFree(in); + } + + return out; +} Index: /branches/rel-1-1/psLib/src/math/psUnaryOp.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psUnaryOp.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psUnaryOp.h (revision 12167) @@ -0,0 +1,66 @@ +/* @file psUnaryOp.h + * + * @brief Provides unary functions for simple matrix and vector element operations + * + * Defined unary functions include: + * + * Addition (+) + * Subtraction (-) + * Multiplication (*) + * Division (/) + * Power (^) + * Minimum (min) + * Maximum (max) + * Absolute value (abs) + * Exponent (exp) + * Natural Log (ln) + * Power of 10 (ten) + * Log (log) + * Sine (sin or dsin) + * Cosine (cos or dcos) + * Tangent (tan or dtan) + * Arcsine (asin or dasin) + * Arccosine (acos or dacos) + * Arctan (atan or datan) + * + * Currently only vector-vector and image-image binary operations are supported. + * + * @author EAM, IfA + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSUNARY_OP_H +#define PSUNARY_OP_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +/** Perform simple unary arithmetic with images or vectors + * + * Performs absolute value, exponent, natural log, power of 10, log, sine, cosine, tangent, arcsine, + * arccosine, or arctan. operations with images and vectors. Uses the form: + * + * out = op(in), + * + * Where op is: "abs", "exp", "ln", "ten", "log", "sin", "cos", "tan" "asin", "acos", "atan", "dsin", + * "dcos", dtan", "dasin", "dacos", or "datan". + * + * Trigometric Operations with "d" prefix use units of degrees. Those without are in radians. + * + * This function only supports vector-vector or image-image opertions. + * + * @return psType* : Pointer to either psImage or psVector. + */ +psMathType* psUnaryOp( + psPtr out, ///< Output type, either psImage or psVector. + const psPtr in, ///< Input, either psImage or psVector. + const char *op ///< Operator. +); + +/// @} +#endif // #ifndef PSUNARY_OP_H Index: /branches/rel-1-1/psLib/src/math/psVectorSmooth.c =================================================================== --- /branches/rel-1-1/psLib/src/math/psVectorSmooth.c (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psVectorSmooth.c (revision 12167) @@ -0,0 +1,107 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psVector.h" +#include "psVectorSmooth.h" +#include "psAssert.h" + + +psVector *psVectorSmooth(psVector *output, + const psVector *input, + double sigma, + double Nsigma + ) +{ + PS_ASSERT_VECTOR_NON_NULL(input, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(sigma, 0.0, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(Nsigma, 0.0, NULL); + + // relevant terms + long Nrange = sigma*Nsigma + 0.5; // Extent of smoothing + long Npixel = 2*Nrange + 1; // Total size of smoothing kernel + long Nbin = input->n; // Number of elements + double factor = -0.5/(sigma*sigma); // Factor for Gaussian + + #define VECTOR_SMOOTH_CASE(TYPE) \ +case PS_TYPE_##TYPE: { \ + output = psVectorRecycle(output, Nbin, PS_TYPE_##TYPE); \ + /* generate normalized gaussian */ \ + psVector *gaussnorm = psVectorAlloc(Npixel, PS_TYPE_##TYPE); \ + double sum = 0.0; \ + for (long i = -Nrange; i < Nrange + 1; i++) { \ + gaussnorm->data.TYPE[i+Nrange] = exp(factor*i*i); \ + sum += gaussnorm->data.TYPE[i+Nrange]; \ + } \ + for (long i = -Nrange; i < Nrange + 1; i++) { \ + gaussnorm->data.TYPE[i+Nrange] /= sum; \ + } \ + ps##TYPE *gauss = &gaussnorm->data.TYPE[Nrange]; \ + \ + /* smooth vector */ \ + psVector *temp = psVectorAlloc(Nbin, PS_TYPE_##TYPE); \ + ps##TYPE *vi = input->data.TYPE; \ + ps##TYPE *vo = temp->data.TYPE; \ + /* smooth first Nrange pixels, with renorm */ \ + /* XXX need to check that this does not run over end for narrow vectors */ \ + for (long i = 0; i < Nrange; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - i; \ + ps##TYPE *vg = gauss - i; \ + double g = 0; \ + double s = 0; \ + for (int n = -i; n < Nrange + 1; n++, vr++, vg++) { \ + s += *vg * *vr; \ + g += *vg; \ + } \ + *vo = s / g; \ + } \ + /* smooth middle pixels */ \ + for (long i = Nrange; i < Nbin - Nrange; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - Nrange; \ + ps##TYPE *vg = gauss - Nrange; \ + double s = 0; \ + for (int n = -Nrange; n < Nrange + 1; n++, vr++, vg++) { \ + s += *vg * *vr; \ + } \ + *vo = s; \ + } \ + /* smooth last Nrange pixels, with renorm */ \ + /* XXX does this miss the last column? */ \ + for (long i = Nbin - Nrange; i < Nbin; i++, vi++, vo++) { \ + ps##TYPE *vr = vi - Nrange; \ + ps##TYPE *vg = gauss - Nrange; \ + double g = 0; \ + double s = 0; \ + for (int n = -Nrange; n < Nbin - i - 1; n++, vr++, vg++) { \ + s += *vg * *vr; \ + g += *vg; \ + } \ + *vo = s / g; \ + } \ + memcpy(output->data.TYPE, temp->data.TYPE, Nbin*sizeof(ps##TYPE)); \ + psFree(temp); \ + psFree(gaussnorm); \ + break; \ + } + + switch (input->type.type) { + VECTOR_SMOOTH_CASE(F32); + VECTOR_SMOOTH_CASE(F64); + default: { + char* typeStr; + PS_TYPE_NAME(typeStr, input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Type %s is not valid.", typeStr); + return NULL; + } + } + return output; +} Index: /branches/rel-1-1/psLib/src/math/psVectorSmooth.h =================================================================== --- /branches/rel-1-1/psLib/src/math/psVectorSmooth.h (revision 12167) +++ /branches/rel-1-1/psLib/src/math/psVectorSmooth.h (revision 12167) @@ -0,0 +1,22 @@ +/* @file psVectorSmooth.h + * @brief smooth the input vector + * + * $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * $Date: 2007-01-23 22:47:23 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_VECTOR_SMOOTH_H +#define PS_VECTOR_SMOOTH_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +// Smooth a vector with a Gaussian +psVector *psVectorSmooth(psVector *output, // Output vector, or NULL + const psVector *input, // Input vector (F32 or F64 only) + double sigma, // Gausian width (standard deviations) + double Nsigma // Number of standard deviations for Gaussian to extend (either side) + ); +/// @} +#endif Index: /branches/rel-1-1/psLib/src/mathtypes/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/mathtypes/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ +#Makefile for mathtypes functions of psLib +# +noinst_LTLIBRARIES = libpslibmathtypes.la + +libpslibmathtypes_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) +libpslibmathtypes_la_SOURCES = \ + psImage.c \ + psScalar.c \ + psVector.c + +EXTRA_DIST = mathtypes.i + +pkginclude_HEADERS = \ + psImage.h \ + psScalar.h \ + psVector.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/mathtypes/mathtypes.i =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/mathtypes.i (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/mathtypes.i (revision 12167) @@ -0,0 +1,5 @@ +/* mathtypes headers */ + +%include "psImage.h" +%include "psScalar.h" +%include "psVector.h" Index: /branches/rel-1-1/psLib/src/mathtypes/psImage.c =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psImage.c (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psImage.c (revision 12167) @@ -0,0 +1,952 @@ +/** @file psImage.c + * + * @brief Contains basic image definitions and operations. + * + * This file defines the basic type for an image struct and functions useful + * in manupulating images. + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.123 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 03:10:33 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + * That is the routine used to generate matrices. + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psAssert.h" +#include "psImage.h" +#include "psString.h" + + + +#define SQUARE(x) ((x)*(x)) +#define MIN(x,y) (((x) > (y)) ? (y) : (x)) +#define MAX(x,y) (((x) > (y)) ? (x) : (y)) + +static void imageFree(psImage* image) +{ + if (image == NULL) { + return; + } + + if (image->parent != NULL) { + psMemBlock* ptr = ((psMemBlock*)image)-1; + int ref = ptr->refCounter; + ptr->refCounter = 2; // make sure psFree is not retriggered + psArrayRemoveData(image->parent->children,image); + ptr->refCounter = ref; // restore previous count (not assuming zero, but should be) + + image->parent = NULL; + } + + psImageFreeChildren(image); + + psFree(image->p_rawDataBuffer); + psFree(image->data.V); +} + +psImage* p_psImageAlloc(const char *file, + unsigned int lineno, + const char *func, + int numCols, + int numRows, + psElemType type) +{ + int elementSize = PSELEMTYPE_SIZEOF(type); // element size in bytes + int rowSize = numCols * elementSize; // row size in bytes. + + if (numRows < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified number of rows (%d) or columns (%d) is invalid."), + numRows, numCols); + return NULL; + } + if (numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified number of rows (%d) or columns (%d) is invalid."), + numRows, numCols); + return NULL; + } + + long numBytes = numRows * numCols * elementSize; + + psImage* image = (psImage* ) p_psAlloc(file, lineno, func, sizeof(psImage)); + + psMemSetDeallocator(image, (psFreeFunc) imageFree); + + image->data.V = psAlloc(sizeof(psPtr ) * numRows); + + image->p_rawDataBuffer = psAlloc(numBytes); + + // set the row pointers. + image->data.V[0] = image->p_rawDataBuffer; + for (psS32 i = 1; i < numRows; i++) { + image->data.V[i] = (psPtr )((int8_t *) image->data.V[i - 1] + rowSize); + } + + image->col0 = 0; + image->row0 = 0; + P_PSIMAGE_SET_NUMCOLS (image, numCols); + P_PSIMAGE_SET_NUMROWS (image, numRows); + + psMathType imageType; + imageType.dimen = PS_DIMEN_IMAGE; + imageType.type = type; + P_PSIMAGE_SET_TYPE (image, imageType); + + image->parent = NULL; + image->children = NULL; + + return image; +} + + +bool psMemCheckImage(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)imageFree ); +} + +bool psImageInit (psImage *image,...) +{ + PS_ASSERT_PTR(image, false); + PS_ASSERT_IMAGE_NON_NULL(image, false); + + va_list argp; + va_start (argp, image); + + switch (image->type.type) { + #define IMAGEINIT_INTCASE(TYPE,NATIVETYPE) \ + case PS_TYPE_##TYPE: { \ + NATIVETYPE temp = va_arg(argp, NATIVETYPE); \ + if ( temp < PS_MIN_##TYPE || temp > PS_MAX_##TYPE ) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: Value %d out of Range.\n", temp); \ + return false; \ + } \ + ps##TYPE value = temp; \ + if (value == 0) { \ + size_t numBytes = image->numCols * sizeof(ps##TYPE); \ + for (int y = 0; y < image->numRows; y++) { \ + memset(image->data.TYPE[y], 0, numBytes); \ + } \ + } else { \ + for (int iy = 0; iy < image->numRows; iy++) { \ + ps##TYPE *row = image->data.TYPE[iy]; \ + for (int ix = 0; ix < image->numCols; ix++) { \ + row[ix] = value; \ + } \ + } \ + } \ + return true; \ + } + + IMAGEINIT_INTCASE(U8,unsigned int) + IMAGEINIT_INTCASE(U16,unsigned int) + IMAGEINIT_INTCASE(U32,unsigned int) + IMAGEINIT_INTCASE(S8,int) + IMAGEINIT_INTCASE(S16,int) + IMAGEINIT_INTCASE(S32,int) + + #define IMAGEINIT_LONGCASE(TYPE,NATIVETYPE) \ + case PS_TYPE_##TYPE: { \ + ps##TYPE value = va_arg(argp, NATIVETYPE); \ + if (value == 0) { \ + size_t numBytes = image->numCols * sizeof(ps##TYPE); \ + for (int y = 0; y < image->numRows; y++) { \ + memset(image->data.TYPE[y], 0, numBytes); \ + } \ + } else { \ + for (int iy = 0; iy < image->numRows; iy++) { \ + ps##TYPE *row = image->data.TYPE[iy]; \ + for (int ix = 0; ix < image->numCols; ix++) { \ + row[ix] = value; \ + } \ + } \ + } \ + return true; \ + } + + IMAGEINIT_LONGCASE(U64,unsigned long) + IMAGEINIT_LONGCASE(S64,long) + + #define IMAGEINIT_FLOATCASE(TYPE) \ + case PS_TYPE_##TYPE: { \ + ps##TYPE value = va_arg(argp, psF64); \ + if (value == 0) { \ + size_t numBytes = image->numCols * sizeof(ps##TYPE); \ + for (int y = 0; y < image->numRows; y++) { \ + memset(image->data.TYPE[y], 0, numBytes); \ + } \ + } else { \ + for (int iy = 0; iy < image->numRows; iy++) { \ + ps##TYPE *row = image->data.TYPE[iy]; \ + for (int ix = 0; ix < image->numCols; ix++) { \ + row[ix] = value; \ + } \ + } \ + } \ + return true; \ + } + + IMAGEINIT_FLOATCASE(F32) + IMAGEINIT_FLOATCASE(F64) + + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "datatype not defined in psImageInit\n"); + } + return (false); +} + +bool psImageSet(psImage *image, + int x, + int y, + double complex value) +{ + PS_ASSERT_IMAGE_NON_NULL(image, false); + PS_ASSERT_INT_NONNEGATIVE(image->col0, false); + PS_ASSERT_INT_NONNEGATIVE(image->row0, false); + PS_ASSERT_INT_POSITIVE(image->numCols, false); + PS_ASSERT_INT_POSITIVE(image->numRows, false); + if ( x >= (image->col0 + image->numCols) ) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + x, image->col0, image->numCols+image->col0-1 ); + return false; + } else if ( y >= (image->row0 + image->numRows) ) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + y, image->row0, image->numRows+image->row0-1 ); + return false; + } else if (x < image->col0 && x >= 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + x, image->col0, image->numCols+image->col0-1 ); + return false; + } else if (y < image->row0 && y >= 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + y, image->row0, image->numRows+image->row0-1 ); + return false; + } else if (x < 0 || y < 0) { + if (x < 0) { + x += image->numCols; + } + if (x < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + (x+image->col0), image->col0, image->numCols+image->col0-1 ); + return false; + } + if (y < 0) { + y += image->numRows; + } + if (y < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + (y+image->row0), image->row0, image->numRows+image->row0-1 ); + return false; + } + } else { + x -= image->col0; + y -= image->row0; + } + + #define IMAGE_SET_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ + image->data.TYPE[y][x] = (ps##TYPE)value; \ + break; + + switch (image->type.type) { + IMAGE_SET_CASE(U8); + IMAGE_SET_CASE(U16); + IMAGE_SET_CASE(U32); + IMAGE_SET_CASE(U64); + IMAGE_SET_CASE(S8); + IMAGE_SET_CASE(S16); + IMAGE_SET_CASE(S32); + IMAGE_SET_CASE(S64); + IMAGE_SET_CASE(F32); + IMAGE_SET_CASE(F64); + IMAGE_SET_CASE(C32); + IMAGE_SET_CASE(C64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Invalid psImage Data Type\n"); + return false; + } + + return true; +} + +double complex psImageGet(const psImage *image, + int x, + int y) +{ + PS_ASSERT_IMAGE_NON_NULL(image, NAN); + PS_ASSERT_INT_NONNEGATIVE(image->col0, NAN); + PS_ASSERT_INT_NONNEGATIVE(image->row0, NAN); + PS_ASSERT_INT_POSITIVE(image->numCols, NAN); + PS_ASSERT_INT_POSITIVE(image->numRows, NAN); + if ( x >= (image->col0 + image->numCols) ) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + x, image->col0, image->numCols+image->col0-1 ); + return NAN; + } else if ( y >= (image->row0 + image->numRows) ) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + y, image->row0, image->numRows+image->row0-1 ); + return NAN; + } else if (x < image->col0 && x >= 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + x, image->col0, image->numCols+image->col0-1 ); + return NAN; + } else if (y < image->row0 && y >= 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + y, image->row0, image->numRows+image->row0-1 ); + return NAN; + } else if (x < 0 || y < 0) { + if (x < 0) { + x += image->numCols; + } + if (x < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid x-position %d. Position out of range (%d-%d)\n", + (x+image->col0), image->col0, image->numCols+image->col0-1 ); + return NAN; + } + if (y < 0) { + y += image->numRows; + } + if (y < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Invalid y-position %d. Position out of range (%d-%d)\n", + (y+image->row0), image->row0, image->numRows+image->row0-1 ); + return NAN; + } + } else { + x -= image->col0; + y -= image->row0; + } + + #define IMAGE_GET_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ + return image->data.TYPE[y][x]; + + switch (image->type.type) { + IMAGE_GET_CASE(U8); + IMAGE_GET_CASE(U16); + IMAGE_GET_CASE(U32); + IMAGE_GET_CASE(U64); + IMAGE_GET_CASE(S8); + IMAGE_GET_CASE(S16); + IMAGE_GET_CASE(S32); + IMAGE_GET_CASE(S64); + IMAGE_GET_CASE(F32); + IMAGE_GET_CASE(F64); + IMAGE_GET_CASE(C32); + IMAGE_GET_CASE(C64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Invalid psImage Data Type\n"); + return NAN; + } +} + +psImage* p_psImageRecycle(const char *file, + unsigned int lineno, + const char *func, + psImage* old, + int numCols, + int numRows, + const psElemType type) +{ + psS32 elementSize = PSELEMTYPE_SIZEOF(type); // element size in bytes + psS32 rowSize = numCols * elementSize; // row size in bytes. + + if (old == NULL) { + old = p_psImageAlloc(file, lineno, func, numCols, numRows, type); + return old; + } + + if (old->type.dimen != PS_DIMEN_IMAGE) { + psFree(old); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("The input psImage must have a PS_DIMEN_IMAGE dimension type.")); + return NULL; + } + + /* image already the right size/type? */ + if (numCols == old->numCols && numRows == old->numRows && + type == old->type.type) { + return old; + } + // Resize the image buffer + old->p_rawDataBuffer = psRealloc(old->data.V[0], + numCols * numRows * elementSize); + old->data.V = (psPtr *)psRealloc(old->data.V, numRows * sizeof(psPtr )); + + // recreate the row pointers + old->data.V[0] = old->p_rawDataBuffer; + for (psS32 i = 1; i < numRows; i++) { + old->data.V[i] = (psPtr )((int8_t *) old->data.V[i - 1] + rowSize); + } + + *(psU32 *)&old->numCols = numCols; + *(psU32 *)&old->numRows = numRows; + *(psElemType* ) & old->type.type = type; + + return old; +} + +bool p_psImageCopyToRawBuffer(void* buffer, + const psImage* input, + psElemType type) +{ + psElemType inDatatype; + psS32 numRows; + psS32 numCols; + + if (input == NULL || input->data.V == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psImage.")); + return false; + } + + if (input->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("The input psImage must have a PS_DIMEN_IMAGE dimension type.")); + return false; + } + + inDatatype = input->type.type; + numRows = input->numRows; + numCols = input->numCols; + + // cover the trival case of copy of the same + // datatype. + if (type == inDatatype) { + int rowSize = PSELEMTYPE_SIZEOF(inDatatype)*numCols; + for (psS32 row=0;rowdata.V[row], rowSize); + } + return true; + } + + #define PSIMAGE_BUFFER_COPY(INTYPE,OUTTYPE) { \ + ps##INTYPE *in; \ + ps##OUTTYPE *out = buffer; \ + for(psS32 row=0;rowdata.INTYPE[row]; \ + for (psS32 col=0;colchildren != NULL) { + psImage** children = (psImage**)image->children->data; + numFreed = image->children->n; + + // orphan the children first + // (so psFree doesn't try to modify the parent's children array while I'm using it) + for (psS32 i=0;iparent = NULL; + } + + psFree(image->children); + image->children = NULL; + } + + return numFreed; +} + +bool p_psImagePrint (int fd, + psImage *a, + char *name) +{ + write(fd,"matrix: ",8); + write(fd,name,strlen(name)); + write(fd,"\n",1); + + char buffer[20]; + // for (int j = 0; j < a[0].numRows; j++) { + // for (int i = 0; i < a[0].numCols; i++) { + for (int j = 0; j < a->numRows; j++) { + for (int i = 0; i < a->numCols; i++) { + snprintf (buffer,20, "%f ", p_psImageGetElementF64(a, i, j)); + write(fd,buffer,strlen(buffer)); + } + write(fd,"\n",1); + } + write(fd,"\n",1); + return (true); +} + +double complex psImagePixelInterpolate(const psImage* input, + float x, + float y, + const psImage* mask, + psMaskType maskVal, + double complex unexposedValue, + psImageInterpolateMode mode) +{ + PS_ASSERT_IMAGE_NON_NULL(input, unexposedValue); + + #define PSIMAGE_PIXEL_INTERPOLATE_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ + switch (mode) { \ + case PS_INTERPOLATE_FLAT: \ + return p_psImagePixelInterpolateFLAT_##TYPE( \ + input, \ + x, \ + y, \ + mask, \ + maskVal, \ + unexposedValue); \ + break; \ + case PS_INTERPOLATE_BILINEAR: \ + return p_psImagePixelInterpolateBILINEAR_##TYPE( \ + input, \ + x, \ + y, \ + mask, \ + maskVal, \ + unexposedValue); \ + break; \ + case PS_INTERPOLATE_BILINEAR_VARIANCE: \ + return p_psImagePixelInterpolateBILINEAR_VARIANCE_##TYPE( \ + input, \ + x, \ + y, \ + mask, \ + maskVal, \ + unexposedValue); \ + break; \ + case PS_INTERPOLATE_BICUBE: \ + return p_psImagePixelInterpolateBICUBE_##TYPE( \ + input, \ + x, \ + y, \ + mask, \ + maskVal, \ + unexposedValue); \ + break; \ + default: \ + psError(PS_ERR_BAD_PARAMETER_VALUE,true, \ + _("Specified interpolation method (%d) is not supported."), \ + mode); \ + } \ + break; + + switch (input->type.type) { + PSIMAGE_PIXEL_INTERPOLATE_CASE(U8); + PSIMAGE_PIXEL_INTERPOLATE_CASE(U16); + PSIMAGE_PIXEL_INTERPOLATE_CASE(U32); + PSIMAGE_PIXEL_INTERPOLATE_CASE(U64); + PSIMAGE_PIXEL_INTERPOLATE_CASE(S8); + PSIMAGE_PIXEL_INTERPOLATE_CASE(S16); + PSIMAGE_PIXEL_INTERPOLATE_CASE(S32); + PSIMAGE_PIXEL_INTERPOLATE_CASE(S64); + PSIMAGE_PIXEL_INTERPOLATE_CASE(F32); + PSIMAGE_PIXEL_INTERPOLATE_CASE(F64); + PSIMAGE_PIXEL_INTERPOLATE_CASE(C32); + PSIMAGE_PIXEL_INTERPOLATE_CASE(C64); + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,input->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE,true, + _("Specified psImage type, %s, is not supported."), + typeStr); + } + } + + return unexposedValue; +} + +psF64 p_psImageGetElementF64(psImage* image, + int col, + int row) +{ + if (image == NULL) { + return NAN; + } + if (col < 0 || col >= image->numCols) { + return NAN; + } + if (row < 0 || row >= image->numRows) { + return NAN; + } + + switch (image->type.type) { + case PS_TYPE_U8: + return image->data.U8[row][col]; + break; + case PS_TYPE_U16: + return image->data.U16[row][col]; + break; + case PS_TYPE_U32: + return image->data.U32[row][col]; + break; + case PS_TYPE_U64: + return image->data.U64[row][col]; + break; + case PS_TYPE_S8: + return image->data.S8[row][col]; + break; + case PS_TYPE_S16: + return image->data.S16[row][col]; + break; + case PS_TYPE_S32: + return image->data.S32[row][col]; + break; + case PS_TYPE_S64: + return image->data.S64[row][col]; + break; + case PS_TYPE_F32: + return image->data.F32[row][col]; + break; + case PS_TYPE_F64: + return image->data.F64[row][col]; + default: + return NAN; + } +} + +#define PSIMAGE_PIXEL_INTERPOLATE_FLAT(TYPE,RETURNTYPE) \ +inline RETURNTYPE p_psImagePixelInterpolateFLAT_##TYPE( \ + const psImage* input, \ + float x, \ + float y, \ + const psImage* mask, \ + psU32 maskVal, \ + RETURNTYPE unexposedValue) \ +{ \ + psS32 intX = (psS32) round((psF64)(x) - 0.5 + FLT_EPSILON); \ + psS32 intY = (psS32) round((psF64)(y) - 0.5 + FLT_EPSILON); \ + psS32 lastX = input->numCols - 1; \ + psS32 lastY = input->numRows - 1; \ + \ + if ((intX < 0) || \ + (intX > lastX) || \ + (intY < 0) || \ + (intY > lastY) || \ + ( (mask!=NULL) && \ + ((mask->data.PS_TYPE_MASK_DATA[intY][intX] & maskVal) != 0) ) ) { \ + return unexposedValue; \ + } \ + \ + return input->data.TYPE[intY][intX]; \ +} + +PSIMAGE_PIXEL_INTERPOLATE_FLAT(U8,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(U16,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(U32,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(U64,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(S8,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(S16,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(S32,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(S64,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(F32,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(F64,psF64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(C32,psC64) +PSIMAGE_PIXEL_INTERPOLATE_FLAT(C64,psC64) + +#define PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(TYPE, RETURNTYPE, SUFFIX, FRACFUNC) \ +inline RETURNTYPE p_psImagePixelInterpolateBILINEAR_##SUFFIX( \ + const psImage* input, \ + float x, \ + float y, \ + const psImage* mask, \ + psU32 maskVal, \ + RETURNTYPE unexposedValue) \ +{ \ + int floorX = floor((x) - 0.5); \ + int floorY = floor((y) - 0.5); \ + psF64 fracX = x - 0.5 - floorX; \ + psF64 fracY = y - 0.5 - floorY; \ + psS32 lastX = input->numCols - 1; \ + psS32 lastY = input->numRows - 1; \ + ps##TYPE V00 = 0; \ + ps##TYPE V01 = 0; \ + ps##TYPE V10 = 0; \ + ps##TYPE V11 = 0; \ + bool valid00 = false; \ + bool valid01 = false; \ + bool valid10 = false; \ + bool valid11 = false; \ + \ + if (floorY >= 0 && floorY <= lastY) { \ + if (floorX >= 0 && floorX <= lastX) { \ + V00 = input->data.TYPE[floorY][floorX]; \ + valid00 = (mask == NULL) || \ + ((mask->data.PS_TYPE_MASK_DATA[floorY][floorX] & maskVal) == 0); \ + } \ + if (floorX >= -1 && floorX < lastX) { \ + V10 = input->data.TYPE[floorY][floorX+1]; \ + valid10 = (mask == NULL) || \ + ((mask->data.PS_TYPE_MASK_DATA[floorY][floorX+1] & maskVal) == 0); \ + } \ + } \ + if (floorY >= -1 && floorY < lastY) { \ + if (floorX >= 0 && floorX <= lastX) { \ + V01 = input->data.TYPE[floorY+1][floorX]; \ + valid01 = (mask == NULL) || \ + ((mask->data.PS_TYPE_MASK_DATA[floorY+1][floorX] & maskVal) == 0); \ + } \ + if (floorX >= -1 && floorX < lastX) { \ + V11 = input->data.TYPE[floorY+1][floorX+1]; \ + valid11 = (mask == NULL) || \ + ((mask->data.PS_TYPE_MASK_DATA[floorY+1][floorX+1] & maskVal) == 0); \ + } \ + } \ + \ + /* cover likely case of all pixels being valid more efficiently */ \ + if (valid00 && valid10 && valid01 && valid11) { \ + /* formula from the ADD */ \ + /* XXX this had V01 and V10 exchanged! */ \ + return V00*FRACFUNC((1.0-fracX)*(1.0-fracY)) + V10*FRACFUNC(fracX*(1.0-fracY)) + \ + V01*FRACFUNC(fracY*(1.0-fracX)) + V11*FRACFUNC(fracX*fracY); \ + } \ + \ + /* OK, at least one pixel is not valid - need to do it piecemeal */ \ + \ + RETURNTYPE V0 = 0.0; \ + bool valid0 = true; \ + if (valid00 && valid10) { \ + V0 = V00*FRACFUNC(1-fracX)+V10*FRACFUNC(fracX); \ + } else if (valid00) { \ + V0 = V00; \ + } else if (valid10) { \ + V0 = V10; \ + } else { \ + valid0 = false; \ + } \ + \ + RETURNTYPE V1 = 0.0; \ + bool valid1 = true; \ + if (valid01 && valid11) { \ + V1 = V01*FRACFUNC(1-fracX)+V11*FRACFUNC(fracX); \ + } else if (valid01) { \ + V1 = V01; \ + } else if (valid11) { \ + V1 = V11; \ + } else { \ + valid1 = false; \ + } \ + \ + if (valid0 && valid1) { \ + return V0*FRACFUNC(1-fracY) + V1*FRACFUNC(fracY); \ + } else if (valid0) { \ + return V0; \ + } else if (valid1) { \ + return V1; \ + } \ + \ + return unexposedValue; \ +} + +// XXX this would be much faster to use a 3x3 kernel to determine the shift +// the same function can be used for all equivalent (kernel-based) shifts... +#define PSIMAGE_PIXEL_INTERPOLATE_BICUBE(TYPE, RETURNTYPE, SUFFIX, FRACFUNC) \ +inline RETURNTYPE p_psImagePixelInterpolateBICUBE_##SUFFIX( \ + const psImage* input, \ + float x, \ + float y, \ + const psImage* mask, \ + psU32 maskVal, \ + RETURNTYPE unexposedValue) \ +{ \ + int floorX = floor(x); \ + int floorY = floor(y); \ + psF64 fracX = x - floorX - 0.5; \ + psF64 fracY = y - floorY - 0.5; \ + psS32 lastX = input->numCols - 1; \ + psS32 lastY = input->numRows - 1; \ + if (floorX < 1) return unexposedValue; \ + if (floorY < 1) return unexposedValue; \ + if (floorX >= lastX) return unexposedValue; \ + if (floorY >= lastY) return unexposedValue; \ + \ + /* XXX use care for masked and boundary pixels */ \ + psF64 Vmm = input->data.TYPE[floorY-1][floorX-1]; \ + psF64 Vom = input->data.TYPE[floorY-1][floorX+0]; \ + psF64 Vpm = input->data.TYPE[floorY-1][floorX+1]; \ + psF64 Vmo = input->data.TYPE[floorY+0][floorX-1]; \ + psF64 Voo = input->data.TYPE[floorY+0][floorX+0]; \ + psF64 Vpo = input->data.TYPE[floorY+0][floorX+1]; \ + psF64 Vmp = input->data.TYPE[floorY+1][floorX-1]; \ + psF64 Vop = input->data.TYPE[floorY+1][floorX+0]; \ + psF64 Vpp = input->data.TYPE[floorY+1][floorX+1]; \ + \ + psF64 Vxm = Vmm + Vmo + Vmp; \ + psF64 Vxp = Vpm + Vpo + Vpp; \ + psF64 Vym = Vmm + Vom + Vpm; \ + psF64 Vyp = Vmp + Vop + Vpp; \ + psF64 Vo = Vym + Vyp + Vmo + Voo + Vpo; \ + \ + psF64 Z_00 = Vo*(5.0/9.0) - (Vxp + Vxm)/3.0 - (Vyp + Vym)/3.0; \ + \ + psF64 Z_10 = (Vxp - Vxm)/6.0; \ + psF64 Z_01 = (Vyp - Vym)/6.0; \ + psF64 Z_20 = (Vxp + Vxm)/2.0 - Vo/3.0; \ + psF64 Z_02 = (Vyp + Vym)/2.0 - Vo/3.0; \ + psF64 Z_11 = (Vpp + Vmm - Vpm - Vmp)/4.0; \ + \ + psF64 value = Z_00 + Z_10*fracX + Z_01*fracY + Z_20*fracX*fracX + Z_11*fracX*fracY + Z_02*fracY*fracY; \ + return value; \ +} + +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U8,psF64,U8,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U16,psF64,U16,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U32,psF64,U32,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U64,psF64,U64,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S8,psF64,S8,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S16,psF64,S16,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S32,psF64,S32,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S64,psF64,S64,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(F32,psF64,F32,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(F64,psF64,F64,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(C32,psC64,C32,) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(C64,psC64,C64,) + +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(U8,psF64,U8,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(U16,psF64,U16,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(U32,psF64,U32,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(U64,psF64,U64,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(S8,psF64,S8,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(S16,psF64,S16,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(S32,psF64,S32,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(S64,psF64,S64,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(F32,psF64,F32,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(F64,psF64,F64,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(C32,psC64,C32,) +PSIMAGE_PIXEL_INTERPOLATE_BICUBE(C64,psC64,C64,) + +// Variance Version +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U8,psF64,VARIANCE_U8,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U16,psF64,VARIANCE_U16,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U32,psF64,VARIANCE_U32,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(U64,psF64,VARIANCE_U64,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S8,psF64,VARIANCE_S8,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S16,psF64,VARIANCE_S16,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S32,psF64,VARIANCE_S32,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(S64,psF64,VARIANCE_S64,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(F32,psF64,VARIANCE_F32,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(F64,psF64,VARIANCE_F64,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(C32,psC64,VARIANCE_C32,SQUARE) +PSIMAGE_PIXEL_INTERPOLATE_BILINEAR(C64,psC64,VARIANCE_C64,SQUARE) Index: /branches/rel-1-1/psLib/src/mathtypes/psImage.h =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psImage.h (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psImage.h (revision 12167) @@ -0,0 +1,354 @@ +/* @file psImage.h + * @brief Basic image definitions and operations + * + * This file defines the basic type for an image struct and functions useful + * in manupulating images. + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.88 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 03:26:15 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_IMAGE_H +#define PS_IMAGE_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include +#include +#include "psType.h" +#include "psArray.h" +#include "psConstants.h" + +/** enumeration of options in interpolation + * + */ +typedef enum { + PS_INTERPOLATE_FLAT, ///< 'flat' interpolation (nearest pixel) + PS_INTERPOLATE_BILINEAR, ///< bi-linear interpolation + PS_INTERPOLATE_BICUBE, ///< bi-cubic interpolation with 3x3 region (EAM) + PS_INTERPOLATE_GAUSS, ///< bi-cubic interpolation with 3x3 region (EAM) + PS_INTERPOLATE_LANCZOS2, ///< Sinc interpolation with 4x4 pixel kernel + PS_INTERPOLATE_LANCZOS3, ///< Sinc interpolation with 6x6 pixel kernel + PS_INTERPOLATE_LANCZOS4, ///< Sinc interpolation with 8x8 pixel kernel + PS_INTERPOLATE_BILINEAR_VARIANCE, ///< Variance version of PS_INTERPOLATE_BILINEAR + PS_INTERPOLATE_LANCZOS2_VARIANCE, ///< Variance version of PS_INTERPOLATE_LANCZOS2 + PS_INTERPOLATE_LANCZOS3_VARIANCE, ///< Variance version of PS_INTERPOLATE_LANCZOS3 + PS_INTERPOLATE_LANCZOS4_VARIANCE ///< Variance version of PS_INTERPOLATE_LANCZOS4 + // PS_INTERPOLATE_NUM_MODES ///< enum end-marker; does not coorespond to a interpolation mode +} psImageInterpolateMode; + + +/** Basic image data structure. + * + * Struct for maintaining image data of varying types. It also contains + * information about image size, parent images and children images. + * + */ +typedef struct psImage +{ + const psMathType type; ///< Image data type and dimension. + const int numCols; ///< Number of columns in image + const int numRows; ///< Number of rows in image. + int col0; ///< Column position relative to parent. + int row0; ///< Row position relative to parent. + + union { + psS8** S8; ///< Signed 8-bit integer data. + psS16** S16; ///< Signed 16-bit integer data. + psS32** S32; ///< Signed 32-bit integer data. + psS64** S64; ///< Signed 64-bit integer data. + psU8** U8; ///< Unsigned 8-bit integer data. + psU16** U16; ///< Unsigned 16-bit integer data. + psU32** U32; ///< Unsigned 32-bit integer data. + psU64** U64; ///< Unsigned 64-bit integer data. + psF32** F32; ///< Single-precision float data. + psF64** F64; ///< Double-precision float data. + psC32** C32; ///< Single-precision complex data. + psC64** C64; ///< Double-precision complex data. + psPtr* V; ///< Pointer to data. + } data; ///< Union for data types. + const struct psImage* parent; ///< Parent, if a subimage. + psPtr p_rawDataBuffer; ///< Raw data buffer for Allocating/Freeing Images; private + psArray* children; ///< Children of this region. + void *lock; ///< Optional lock for thread safety +} +psImage; + + +#define P_PSIMAGE_SET_NUMCOLS(img,nc) {*(int*)&img->numCols = nc;} +#define P_PSIMAGE_SET_NUMROWS(img,nr) {*(int*)&img->numRows = nr;} +#define P_PSIMAGE_SET_TYPE(img,t) {*(psMathType*)&img->type = t;} + +/** Create an image of the specified size and type. + * + * Uses psLib memory allocation functions to create an image struct of the + * specified size and type. + * + * @return psImage* : Pointer to psImage. + * + */ +#ifdef DOXYGEN +psImage* psImageAlloc( + int numCols, ///< Number of columns in image. + int numRows, ///< Number of rows in image. + psElemType type ///< Type of data for image. +); +#else // ifdef DOXYGEN +psImage* p_psImageAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + int numCols, ///< Number of columns in image. + int numRows, ///< Number of rows in image. + psElemType type ///< Type of data for image. +); +#define psImageAlloc(numCols, numRows, type) \ + p_psImageAlloc(__FILE__, __LINE__, __func__, numCols, numRows, type) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr * datatype. + * @return bool: True if the pointer matches a psImage structure, false otherwise. + */ +bool psMemCheckImage( + psPtr ptr ///< the pointer whose type to check +); + +/** Initializes the image with the given value. + * + * The input data is cast to match the image datatype. + * + * @return bool: True on success, otherwise false. + */ +bool psImageInit( + psImage *image, ///< the image to be initialized + ... ///< Variable argument list for initialization +); + + +/** Sets the value of the image at the specified x,y position to value. + * + * A negative value for the x or y positions means index from the end. + * + * @return bool: True on success, otherwise false. + */ +bool psImageSet( + psImage *image, ///< the image to set + int x, ///< x-position + int y, ///< y-position + double complex value ///< specified value to set +); + +/** Returns the value of the image at the specified x,y position. + * + * A negative value for the x or y positions means index from the end. + * + * @return complex: The value at the specified x,y position. + */ +double complex psImageGet( + const psImage *image, ///< the image from which to get + int x, ///< x-position + int y ///< y-position +); + +/** Resize a given image to the given size/type. + * + * @return psImage* Resized psImage. + */ +#ifdef DOXYGEN +psImage* psImageRecycle( + psImage* old, ///< the psImage to recycle by resizing image buffer + int numCols, ///< the desired number of columns in image + int numRows, ///< the desired number of rows in image + const psElemType type ///< the desired datatype of the image +); +#else // ifdef DOXYGEN +psImage* p_psImageRecycle( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psImage* old, ///< the psImage to recycle by resizing image buffer + int numCols, ///< the desired number of columns in image + int numRows, ///< the desired number of rows in image + const psElemType type ///< the desired datatype of the image +); +#define psImageRecycle(old, numCols, numRows, type) \ + p_psImageRecycle(__FILE__, __LINE__, __func__, old, numCols, numRows, type) +#endif // ifdef DOXYGEN + + +/** Copy an image to a new buffer + * + * @return True if image copied or false if error + */ +bool p_psImageCopyToRawBuffer( + void* buffer, ///< the buffer used to copy the image + const psImage* input, ///< the input image to be copied + psElemType type ///< the datatype of the image to be copied +); + + +/** Frees all children of a psImage. + * + * @return int Number of children freed. + */ +int psImageFreeChildren( + psImage* image ///< psImage in which all children shall be deallocated +); + + +/** get an element of an image as a psF64. + * + * @return psF64 pixel value at specified location + */ +psF64 p_psImageGetElementF64( + psImage* image, ///< input image + int col, ///< pixel column + int row ///< pixel row +); + + +/** print image pixel values. + * + * @return bool TRUE is successful, otherwise FALSE. + */ +bool p_psImagePrint( + int fd, ///< Destination file descriptor + psImage *a, ///< image to print + char *name ///< name of the image (for title) +); + + +/** Interpolate image pixel value given floating point coordinates. + * + * @return complex Pixel value interpolated from image or unexposedValue if + * given x,y doesn't coorespond to a valid image location + */ +double complex psImagePixelInterpolate( + const psImage* input, ///< input image for interpolation + float x, ///< column location to derive value of + float y, ///< row location ot derive value of + const psImage* mask, ///< if not NULL, the mask of the input image + psMaskType maskVal, ///< the mask value + double complex unexposedValue, ///< return value if x,y location is not in image. + psImageInterpolateMode mode ///< interpolation mode +); + + +#define PIXEL_INTERPOLATE_FCN_PROTOTYPE(SUFFIX, RETURNTYPE) \ +inline RETURNTYPE p_psImagePixelInterpolate##SUFFIX( \ + const psImage* input, /**< input image for interpolation */ \ + float x, /**< column location to derive value of */ \ + float y, /**< row location ot derive value of */ \ + const psImage* mask, /**< if not NULL, the mask of the input image */ \ + psU32 maskVal, /**< the mask value */ \ + RETURNTYPE unexposedValue /**< return value if x,y location is not in image. */ \ + ); + +#define PIXEL_INTERPOLATE_FCNS(MODE) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_U8,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_U16,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_U32,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_U64,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_S8,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_S16,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_S32,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_S64,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_F32,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_F64,psF64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_C32,psC64) \ +PIXEL_INTERPOLATE_FCN_PROTOTYPE(MODE##_C64,psC64) + +#ifndef SWIG +PIXEL_INTERPOLATE_FCNS(FLAT) +PIXEL_INTERPOLATE_FCNS(BILINEAR) +PIXEL_INTERPOLATE_FCNS(BILINEAR_VARIANCE) +PIXEL_INTERPOLATE_FCNS(BICUBE) +#endif // ! SWIG + +#undef PIXEL_INTERPOLATE_FCN_PROTOTYPE +#undef PIXEL_INTERPOLATE_FCNS + +/***************************************************************************** + PS_IMAGE macros: +*****************************************************************************/ +#define PS_ASSERT_IMAGE_NON_NULL(NAME, RVAL) PS_ASSERT_GENERAL_IMAGE_NON_NULL(NAME, return RVAL) +#define PS_ASSERT_GENERAL_IMAGE_NON_NULL(NAME, CLEANUP) \ +if ((NAME) == NULL || (NAME)->data.V == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: psImage %s or its data is NULL.", \ + #NAME); \ + CLEANUP; \ +} + +#define PS_ASSERT_IMAGE_NON_EMPTY(NAME, RVAL) PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(NAME, return RVAL) +#define PS_ASSERT_GENERAL_IMAGE_NON_EMPTY(NAME, CLEANUP) \ +if ((NAME)->numCols < 1 || (NAME)->numRows < 1) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "Unallowable operation: psImage %s has zero rows or columns (%dx%d).", \ + #NAME, (NAME)->numCols, (NAME)->numRows); \ + CLEANUP; \ +} + +#define PS_ASSERT_IMAGE_TYPE(NAME, TYPE, RVAL) \ +if ((NAME)->type.type != TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: psImage %s has incorrect type.", \ + #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_IMAGE_TYPE_F32_OR_F64(NAME, RVAL) \ +if ((NAME)->type.type != PS_TYPE_F32 && (NAME)->type.type != PS_TYPE_F64) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: psImage %s is not of type F32 or F64.", \ + #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_IMAGES_SIZE_EQUAL(NAME1, NAME2, RVAL) \ +if (((NAME1)->numCols != (NAME2)->numCols) || \ + ((NAME1)->numRows != (NAME2)->numRows)) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "Unallowable operation: psImages %s and %s are not the same size.", \ + #NAME1, #NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_IMAGE_SIZE(NAME1, NUM_COLS, NUM_ROWS, RVAL) \ +if (((NAME1)->numCols != NUM_COLS) || \ + ((NAME1)->numRows != NUM_ROWS)) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "Unallowable operation: psImages %s is not the correct size.", \ + #NAME1); \ + return(RVAL); \ +} + +#define PS_IMAGE_PRINT_F32(NAME) \ +printf("======== printing %s ========\n", #NAME); \ +for (int i = 0 ; i < (NAME)->numRows ; i++) { \ + for (int j = 0 ; j < (NAME)->numCols ; j++) { \ + printf("%.2f ", (NAME)->data.F32[i][j]); \ + } \ + printf("\n"); \ +}\ + +#define PS_IMAGE_PRINT_F64(NAME) \ +printf("======== printing %s ========\n", #NAME); \ +for (int i = 0 ; i < (NAME)->numRows ; i++) { \ + for (int j = 0 ; j < (NAME)->numCols ; j++) { \ + printf("%.2f ", (NAME)->data.F64[i][j]); \ + } \ + printf("\n"); \ +}\ + +/// @} +#endif // PS_IMAGE_H Index: /branches/rel-1-1/psLib/src/mathtypes/psScalar.c =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psScalar.c (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psScalar.c (revision 12167) @@ -0,0 +1,164 @@ +/** @file psScalar.c + * + * @brief Contains basic scalar definitions and operations + * + * This file defines the basic type for a scalar struct and functions useful + * in manupulating scalars. + * * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.27 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 02:42:46 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include "psMemory.h" +#include "psError.h" +#include "psScalar.h" +#include "psLogMsg.h" +#include "psAbort.h" +#include "psAssert.h" + + +static void scalarFree(psScalar *scalar) +{ + // There are non dynamic allocated items +} + +psScalar* p_psScalarAlloc(const char *file, + unsigned int lineno, + const char *func, + double complex value, + psElemType type) +{ + psScalar* scalar = NULL; + + // Create scalar + scalar = (psScalar* ) p_psAlloc(file, lineno, func, sizeof(psScalar)); + psMemSetDeallocator(scalar, (psFreeFunc)scalarFree); + scalar->type.dimen = PS_DIMEN_SCALAR; + scalar->type.type = type; + + switch (type) { + case PS_TYPE_S8: + scalar->data.S8 = (psS8) value; + break; + case PS_TYPE_U8: + scalar->data.U8 = (psU8) value; + break; + case PS_TYPE_S16: + scalar->data.S16 = (psS16) value; + break; + case PS_TYPE_U16: + scalar->data.U16 = (psU16) value; + break; + case PS_TYPE_S32: + scalar->data.S32 = (psS32) value; + break; + case PS_TYPE_U32: + scalar->data.U32 = (psU32) value; + break; + case PS_TYPE_S64: + scalar->data.S64 = (psS64) value; + break; + case PS_TYPE_U64: + scalar->data.U64 = (psU64) value; + break; + case PS_TYPE_F32: + scalar->data.F32 = (psF32) value; + break; + case PS_TYPE_F64: + scalar->data.F64 = (psF64) value; + break; + case PS_TYPE_C32: + scalar->data.C32 = (psC32) value; + break; + case PS_TYPE_C64: + scalar->data.C64 = (psC64) value; + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified datatype (%d) is unsupported by psScalar."), + type); + psFree(scalar); + return NULL; + } + + return scalar; +} + + + +bool psMemCheckScalar(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, NULL); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)scalarFree ); +} + + +psScalar* p_psScalarCopy(const char *file, + unsigned int lineno, + const char *func, + const psScalar *value) +{ + psElemType dataType; + psScalar *newScalar = NULL; + + if (value == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not copy a NULL psScalar.")); + return NULL; + } + + dataType = value->type.type; + switch (dataType) { + case PS_TYPE_S8: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.S8, dataType); + break; + case PS_TYPE_U8: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.U8, dataType); + break; + case PS_TYPE_S16: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.S16, dataType); + break; + case PS_TYPE_U16: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.U16, dataType); + break; + case PS_TYPE_S32: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.S32, dataType); + break; + case PS_TYPE_U32: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.U32, dataType); + break; + case PS_TYPE_S64: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.S64, dataType); + break; + case PS_TYPE_U64: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.U64, dataType); + break; + case PS_TYPE_F32: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.F32, dataType); + break; + case PS_TYPE_F64: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.F64, dataType); + break; + case PS_TYPE_C32: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.C32, dataType); + break; + case PS_TYPE_C64: + newScalar = p_psScalarAlloc(file, lineno, func, value->data.C64, dataType); + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified datatype (%d) is unsupported by psScalar."), + dataType); + return NULL; + } + + return newScalar; +} Index: /branches/rel-1-1/psLib/src/mathtypes/psScalar.h =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psScalar.h (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psScalar.h (revision 12167) @@ -0,0 +1,115 @@ +/* @file psScalar.h + * @brief Basic scalar definitions and operations + * + * This file defines the basic type for a scalar struct and functions useful + * in manupulating scalars. + * + * @author Ross Harman, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.22 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 02:42:46 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_SCALAR_H +#define PS_SCALAR_H + +/// @addtogroup MathOps Mathematical Operations +/// @{ + +#include "psType.h" + +/** Basic scalar data structure. + * + * Struct for maintaining a scalar of frequently used primitive types. + * + */ +typedef struct +{ + psMathType type; ///< Type of data. + + union { + psS8 S8; ///< Signed 8-bit integer data. + psS16 S16; ///< Signed 16-bit integer data. + psS32 S32; ///< Signed 32-bit integer data. + psS64 S64; ///< Signed 64-bit integer data. + psU8 U8; ///< Unsigned 8-bit integer data. + psU16 U16; ///< Unsigned 16-bit integer data. + psU32 U32; ///< Unsigned 32-bit integer data. + psU64 U64; ///< Unsigned 64-bit integer data. + psF32 F32; ///< Single-precision float data. + psF64 F64; ///< Double-precision float data. + psC32 C32; ///< Single-precision complex data. + psC64 C64; ///< Double-precision complex data. + } data; ///< Union for data types. +} +psScalar; + +/*****************************************************************************/ + +/* FUNCTION PROTOTYPES */ + +/*****************************************************************************/ + +/** Allocate a scalar. + * + * Uses psLib memory allocation functions to create scalar data as defined by the psType type. + * Accepts a complex 64 bit float for input value, as max size, but resizes according to + * correct type. + * + * @return psScalar* Pointer to a new psScalar. + */ +#ifdef DOXYGEN +psScalar* psScalarAlloc( + double complex value, ///< Data to be put into psScalar + psElemType type ///< Type of data to be held by psScalar +); +#else // ifdef DOXYGEN +psScalar* p_psScalarAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + double complex value, ///< Data to be put into psScalar + psElemType type ///< Type of data to be held by psScalar +); +#define psScalarAlloc(value, type) \ + p_psScalarAlloc(__FILE__, __LINE__, __func__, value, type) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psScalar structure, false otherwise. + */ +bool psMemCheckScalar( + psPtr ptr ///< the pointer whose type to check +); + + +/** Copy a scalar. + * + * Uses psLib memory allocation functions to copy a scalar. + * + * @return psScalar* A copy of the input scalar + */ +#ifdef DOXYGEN +psScalar* psScalarCopy( + const psScalar *value ///< Scalar to copy +); +#else // ifdef DOXYGEN +psScalar* p_psScalarCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const psScalar *value ///< Scalar to copy. +); +#define psScalarCopy(value) \ + p_psScalarCopy(__FILE__, __LINE__, __func__, value) +#endif // ifdef DOXYGEN + + +/// @} +#endif // #ifndef PS_SCALAR_H Index: /branches/rel-1-1/psLib/src/mathtypes/psVector.c =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psVector.c (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psVector.c (revision 12167) @@ -0,0 +1,1125 @@ +/** @file psVector.c +* +* @brief Contains support for basic vector types +* +* This file defines the basic type for a vector struct and functions useful +* in manupulating vectors. +* +* @author Ross Harman, MHPCC +* @author Robert DeSonia, MHPCC +* @author Joshua Hoblitt, University of Hawaii +* +* @version $Revision: 1.94 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 02:59:36 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include // for memcpy +#include +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psVector.h" +#include "psLogMsg.h" +#include "psCompare.h" +#include "psAssert.h" +#include "psString.h" + +typedef struct +{ + union { + psU8* U8; ///< Unsigned 8-bit integer data. + psU16* U16; ///< Unsigned 16-bit integer data. + psU32* U32; ///< Unsigned 32-bit integer data. + psU64* U64; ///< Unsigned 64-bit integer data. + psS8* S8; ///< Signed 8-bit integer data. + psS16* S16; ///< Signed 16-bit integer data. + psS32* S32; ///< Signed 32-bit integer data. + psS64* S64; ///< Signed 64-bit integer data. + psF32* F32; ///< Single-precision float data. + psF64* F64; ///< Double-precision float data. + psC32* C32; ///< Single-precision complex data. + psC64* C64; ///< Double-precision complex data. + } data; + psU32 index; +} +indexedVector; + +static void vectorFree(psVector* psVec); + +static void vectorFree(psVector* psVec) +{ + if (psVec == NULL) { + return; + } + + psFree(psVec->data.U8); +} + +// FUNCTION IMPLEMENTATION - PUBLIC +bool psMemCheckVector(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)vectorFree ); +} + + +// Allocate a psVector; does not set vector->n (left to the caller) +static psVector *vectorAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc, // Number of elements to allocate + psElemType type) // Type of elements +{ + int elementSize = PSELEMTYPE_SIZEOF(type); // Size, in bytes, of element + if (elementSize < 1) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psVector is an unsupported type (0x%x)."), type); + return NULL; + } + + // Create vector struct + psVector *vector = (psVector*) p_psAlloc(file, lineno, func, sizeof(psVector)); + psMemSetDeallocator(vector, (psFreeFunc) vectorFree); + + vector->type.dimen = PS_DIMEN_VECTOR; + vector->type.type = type; + P_PSVECTOR_SET_NALLOC(vector, nalloc); + + // Create vector data array + vector->data.U8 = psAlloc(nalloc * elementSize); + + return vector; +} + +psVector* p_psVectorAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc, + psElemType type) +{ + psVector *vector = vectorAlloc(file, lineno, func, nalloc, type); + if (!vector) { + return NULL; + } + vector->n = nalloc; + return vector; +} + +psVector* p_psVectorAllocEmpty(const char *file, + unsigned int lineno, + const char *func, + long nalloc, + psElemType type) +{ + psVector *vector = vectorAlloc(file, lineno, func, nalloc, type); + if (!vector) { + return NULL; + } + vector->n = 0; + return vector; +} + +psVector* psVectorRealloc(psVector* vector, + long nalloc) +{ + psS32 elementSize = 0; + psElemType elemType; + + if (vector == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("psVectorRealloc must a given a non-NULL psVector to resize. Desired datatype unknown.")); + return NULL; + } else if (vector->nalloc != nalloc) { // No need to realloc to same size + elemType = vector->type.type; + elementSize = PSELEMTYPE_SIZEOF(elemType); + if (nalloc < vector->n) { + vector->n = nalloc; + } + // Realloc after decrementation to avoid accessing freed array elements + vector->data.U8 = psRealloc(vector->data.U8, nalloc * elementSize); + P_PSVECTOR_SET_NALLOC(vector,nalloc); + } + + return vector; +} + +psVector* p_psVectorRecycle(const char *file, + unsigned int lineno, + const char *func, + psVector* vector, + long nalloc, + psElemType type) +{ + psS32 byteSize; + + if (vector == NULL) { + return p_psVectorAlloc(file, lineno, func, nalloc, type); + } + + if (vector->type.dimen != PS_DIMEN_VECTOR && + vector->type.dimen != PS_DIMEN_TRANSV) { + psFree(vector); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("The input psVector must have a vector dimension type.")); + return NULL; + } + + byteSize = nalloc * PSELEMTYPE_SIZEOF(type); + + // need to increase data buffer? + if (byteSize > vector->nalloc*PSELEMTYPE_SIZEOF(vector->type.type)) { + vector->data.U8 = psRealloc(vector->data.U8, byteSize); + P_PSVECTOR_SET_NALLOC(vector,nalloc); + } + + vector->type.dimen = PS_DIMEN_VECTOR; + vector->type.type = type; + vector->n = nalloc; + return vector; +} + +psVector *psVectorExtend(psVector *vector, + long delta, + long nExtend) +{ + // can't handle a NULL vector (don't know the data type to allocate) + if (vector == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psVector can not be NULL.")); + return NULL; + } + + // requirement on delta; if < 1, set to 10. + if (delta < 1) { + delta = 10; + } + + // adjust the allocated size, if needed. (if nExtend < 1, this is will never happen) + if (nExtend > 0) { + unsigned int minAlloc = vector->n + nExtend + nExtend; + if (vector->nalloc < minAlloc) { + unsigned int nAlloc = delta + vector->nalloc; + // make sure the delta is large enough hold twice the extended length. + if (nAlloc < minAlloc) { + nAlloc = minAlloc; + } + vector = psVectorRealloc(vector, nAlloc); + } + } else if (nExtend < -vector->n) { + // For the case of a negative nExtend, need to check that we are not decreasing + // vector beyond its own length (i.e., creating a negative length). + nExtend = -vector->n; + } + + // increment the length by the value specified + vector->n += nExtend; + + return vector; +} + +psVector* p_psVectorCopy(const char *file, + unsigned int lineno, + const char *func, + psVector* output, + const psVector* input, + psElemType type) +{ + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("The input psVector can not be NULL.")); + psFree(output); + return NULL; + } + + psS32 nElements = input->n; + + output = p_psVectorRecycle(file, lineno, func, output, nElements, type); + if (nElements == 0) { + // psWarning("Warning: psVector was copied with 0 elements!\n"); + return output; + } + output->n = nElements; + + if (input->type.type == type) { + // Can simply copy the bytes if the types are the same + + #define PSVECTOR_COPY_SAME_CASE(NAME) \ + case PS_TYPE_##NAME: \ + output->data.NAME = memcpy(output->data.NAME, input->data.NAME, \ + input->n * PSELEMTYPE_SIZEOF(PS_TYPE_##NAME)); \ + break; + + switch (type) { + PSVECTOR_COPY_SAME_CASE(U8); + PSVECTOR_COPY_SAME_CASE(U16); + PSVECTOR_COPY_SAME_CASE(U32); + PSVECTOR_COPY_SAME_CASE(U64); + PSVECTOR_COPY_SAME_CASE(S8); + PSVECTOR_COPY_SAME_CASE(S16); + PSVECTOR_COPY_SAME_CASE(S32); + PSVECTOR_COPY_SAME_CASE(S64); + PSVECTOR_COPY_SAME_CASE(F32); + PSVECTOR_COPY_SAME_CASE(F64); + PSVECTOR_COPY_SAME_CASE(C32); + PSVECTOR_COPY_SAME_CASE(C64); + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + // _("Input psVector is an unsupported type (0x%x)."), typeStr); + "Input psVector is an unsupported type.\n"); + psFree(output); + return NULL; + } + } + return output; + } + + #define PSVECTOR_COPY(INTYPE,OUTTYPE) { \ + ps##INTYPE *inVec = input->data.INTYPE; \ + ps##OUTTYPE *outVec = output->data.OUTTYPE; \ + for (psS32 col=0;coltype.type) { \ + case PS_TYPE_S8: \ + PSVECTOR_COPY(S8,OUTTYPE); \ + break; \ + case PS_TYPE_S16: \ + PSVECTOR_COPY(S16,OUTTYPE); \ + break; \ + case PS_TYPE_S32: \ + PSVECTOR_COPY(S32,OUTTYPE); \ + break; \ + case PS_TYPE_S64: \ + PSVECTOR_COPY(S64,OUTTYPE); \ + break; \ + case PS_TYPE_U8: \ + PSVECTOR_COPY(U8,OUTTYPE); \ + break; \ + case PS_TYPE_U16: \ + PSVECTOR_COPY(U16,OUTTYPE); \ + break; \ + case PS_TYPE_U32: \ + PSVECTOR_COPY(U32,OUTTYPE); \ + break; \ + case PS_TYPE_U64: \ + PSVECTOR_COPY(U64,OUTTYPE); \ + break; \ + case PS_TYPE_F32: \ + PSVECTOR_COPY(F32,OUTTYPE); \ + break; \ + case PS_TYPE_F64: \ + PSVECTOR_COPY(F64,OUTTYPE); \ + break; \ + case PS_TYPE_C32: \ + PSVECTOR_COPY(C32,OUTTYPE); \ + break; \ + case PS_TYPE_C64: \ + PSVECTOR_COPY(C64,OUTTYPE); \ + break; \ + default: { \ + char* typeStr; \ + PS_TYPE_NAME(typeStr,type); \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + _("Input psVector is an unsupported type (0x%s)."), \ + typeStr); \ + psFree(output); \ + } \ + } \ + break; \ + } + + switch (type) { + PSVECTOR_COPY_CASE(S8); + PSVECTOR_COPY_CASE(S16); + PSVECTOR_COPY_CASE(S32); + PSVECTOR_COPY_CASE(S64); + PSVECTOR_COPY_CASE(U8); + PSVECTOR_COPY_CASE(U16); + PSVECTOR_COPY_CASE(U32); + PSVECTOR_COPY_CASE(U64); + PSVECTOR_COPY_CASE(F32); + PSVECTOR_COPY_CASE(F64); + PSVECTOR_COPY_CASE(C32); + PSVECTOR_COPY_CASE(C64); + default: { + char* typeStr; + PS_TYPE_NAME(typeStr,type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psVector is an unsupported type (0x%s)."), + typeStr); + psFree(output); + output = NULL; + break; + } + } + return output; + + +} + +// Heap sort of the array +// XXX since the key size is fixed (same number of bits) a Radix sort could be +// a big win here -- someone should benchmark this -JH +#define PSVECTOR_SORT_CASE(NAME) \ +case PS_TYPE_##NAME: { \ + ps##NAME temp; \ + ps##NAME *value = outVector->data.NAME; \ + for (;;) { \ + if (l > 0) { \ + temp = value[--l]; \ + } else { \ + temp = value[ir]; \ + value[ir] = value[0]; \ + if (--ir == 0) { \ + value[0] = temp; \ + return outVector; \ + } \ + } \ + int i = l; \ + int j = (l << 1) + 1; \ + while (j <= ir) { \ + if (j < ir && value[j] < value[j+1]) \ + ++j; \ + if (temp < value[j]) { \ + value[i]=value[j]; \ + j += (i=j) + 1; \ + } else { \ + j = ir + 1; \ + } \ + } \ + value[i] = temp; \ + } \ +} \ +break; + +psVector* psVectorSort(psVector* outVector, + const psVector* inVector) +{ + if (!inVector) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("psVectorSort can not sort a NULL psVector.")); + psFree(outVector); + return NULL; + } + + outVector = psVectorCopy(outVector, inVector, inVector->type.type); + if (outVector == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Error in psVectorSort: psVectorCopy returned NULL vector!\n"); + return NULL; + } + long N = outVector->n; // Number of elements + if (N < 2) { + return outVector; + } + long l = N >> 1; + long ir = N - 1; + switch (outVector->type.type) { + PSVECTOR_SORT_CASE(U8); + PSVECTOR_SORT_CASE(U16); + PSVECTOR_SORT_CASE(U32); + PSVECTOR_SORT_CASE(U64); + PSVECTOR_SORT_CASE(S8); + PSVECTOR_SORT_CASE(S16); + PSVECTOR_SORT_CASE(S32); + PSVECTOR_SORT_CASE(S64); + PSVECTOR_SORT_CASE(F32); + PSVECTOR_SORT_CASE(F64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psVector is an unsupported type (0x%x)."), + inVector->type.type); + psFree(outVector); + return NULL; + } + return outVector; +} + +// Heap sort of the index array +#define PSVECTOR_SORT_INDEX_CASE(NAME) \ +case PS_TYPE_##NAME: { \ + psS32 temp; \ + psS32 *index = out->data.S32; \ + ps##NAME *value = inVector->data.NAME; \ + for (;;) { \ + if (l > 0) { \ + temp = index[--l]; \ + } else { \ + temp = index[ir]; \ + index[ir] = index[0]; \ + if (--ir == 0) { \ + index[0] = temp; \ + return out; \ + } \ + } \ + long i = l; \ + long j = (l << 1) + 1; \ + while (j <= ir) { \ + if (j < ir && value[index[j]] < value[index[j+1]]) \ + ++j; \ + if (value[temp ] < value[index[j]]) { \ + index[i]=index[j]; \ + j += (i=j) + 1; \ + } else { \ + j = ir + 1; \ + } \ + } \ + index[i] = temp; \ + } \ +} \ +break; + +psVector* psVectorSortIndex(psVector* outVector, + const psVector* inVector) +{ + if (inVector == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("psVectorSort can not sort a NULL psVector.")); + psFree(outVector); + return NULL; + } + + psVector *out = psVectorRecycle(outVector, inVector->n, PS_TYPE_S32); // Vector for output + out = psVectorCreate(out, 0, inVector->n, 1, PS_TYPE_S32); + long N = out->n; // Number of elements + if (N < 2) { + return out; + } + long l = N >> 1; + long ir = N - 1; + switch (inVector->type.type) { + PSVECTOR_SORT_INDEX_CASE(U8); + PSVECTOR_SORT_INDEX_CASE(U16); + PSVECTOR_SORT_INDEX_CASE(U32); + PSVECTOR_SORT_INDEX_CASE(U64); + PSVECTOR_SORT_INDEX_CASE(S8); + PSVECTOR_SORT_INDEX_CASE(S16); + PSVECTOR_SORT_INDEX_CASE(S32); + PSVECTOR_SORT_INDEX_CASE(S64); + PSVECTOR_SORT_INDEX_CASE(F32); + PSVECTOR_SORT_INDEX_CASE(F64); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psVector is an unsupported type (0x%x)."), + inVector->type.type); + psFree(outVector); + return NULL; + } + return out; +} + +psString psVectorToString(const psVector* vector, + int maxLength) +{ + + if (maxLength < 5) { + return NULL; + } + + psString str = psStringAlloc(maxLength + 1); + + if (vector == NULL) { + snprintf(str,maxLength, "NULL"); + return str; + } + + int size = vector->n; + + if (size == 0) { + snprintf(str,maxLength, "[]"); + return str; + } + + psString tempStr = psStringAlloc(maxLength+1); + *str = '\0'; + bool full = false; + + #define APPEND_ELEMENTS_CASE(TYPE, NATIVE_TYPE, FORMAT) \ +case PS_TYPE_##TYPE: \ + for (lcv=0; lcv < size && ! full; lcv++) { \ + snprintf(tempStr, maxLength, "%s" FORMAT, prefix, (NATIVE_TYPE) (vector->data.TYPE[lcv])); \ + strncat(str,tempStr,maxLength); \ + full = (strlen(str) > maxLength-2); \ + prefix = ","; \ + } \ + break; + + #define APPEND_ELEMENTS_CASE_COMPLEX(TYPE,CREAL,CIMAG) \ +case PS_TYPE_##TYPE: \ + for (lcv=0; lcv < size && ! full; lcv++) { \ + snprintf(tempStr, maxLength, "%s%g%+gi", prefix, \ + CREAL(vector->data.TYPE[lcv]), \ + CIMAG(vector->data.TYPE[lcv])); \ + strncat(str,tempStr,maxLength); \ + full = (strlen(str) > maxLength-2); \ + prefix = ","; \ + } \ + break; + + int lcv; + char* prefix = "["; + switch(vector->type.type) { + APPEND_ELEMENTS_CASE(S8,char,"%hd") + APPEND_ELEMENTS_CASE(S16,short int,"%hd") + APPEND_ELEMENTS_CASE(S32,int,"%d") + APPEND_ELEMENTS_CASE(S64,long,"%ld") + APPEND_ELEMENTS_CASE(U8,unsigned char,"%hu") + APPEND_ELEMENTS_CASE(U16,unsigned short,"%hu") + APPEND_ELEMENTS_CASE(U32,unsigned int, "%u") + APPEND_ELEMENTS_CASE(U64,unsigned long,"%lu") + APPEND_ELEMENTS_CASE(F32,double,"%g") + APPEND_ELEMENTS_CASE(F64,double,"%g") + APPEND_ELEMENTS_CASE_COMPLEX(C32,crealf,cimagf) + APPEND_ELEMENTS_CASE_COMPLEX(C64,creal,cimag) + default: + snprintf(str,maxLength,"[...]"); + break; + } + + if (full) { + // couldn't all fit in given string length + + // remove elements until there is room for ",...]" + while (strlen(str) > maxLength - 5) { + char* lastComma = strrchr(str,','); + if (lastComma == NULL) { // no comma, must be first number + str[1] = '\0'; + } else { + *lastComma = '\0'; + } + } + strncat(str,",...]",maxLength); + } else { + strncat(str,"]",maxLength); + } + + psFree(tempStr); + + return str; +} + +psF64 p_psVectorGetElementF64(const psVector* vector, + int position) +{ + if (vector == NULL) { + return NAN; + } + if (position < 0 || position >= vector->n) { + return NAN; + } + + switch (vector->type.type) { + case PS_TYPE_U8: + return vector->data.U8[position]; + break; + case PS_TYPE_U16: + return vector->data.U16[position]; + break; + case PS_TYPE_U32: + return vector->data.U32[position]; + break; + case PS_TYPE_U64: + return vector->data.U64[position]; + break; + case PS_TYPE_S8: + return vector->data.S8[position]; + break; + case PS_TYPE_S16: + return vector->data.S16[position]; + break; + case PS_TYPE_S32: + return vector->data.S32[position]; + break; + case PS_TYPE_S64: + return vector->data.S64[position]; + break; + case PS_TYPE_F32: + return vector->data.F32[position]; + break; + case PS_TYPE_F64: + return vector->data.F64[position]; + default: + return NAN; + } +} + + +bool p_psVectorPrint (int fd, + const psVector *a, + char *name) +{ + char line[1024]; + + sprintf (line, "vector: %s\n", name); + write (fd, line, strlen(line)); + + for (int i = 0; i < a[0].n; i++) { + sprintf (line, "%f\n", p_psVectorGetElementF64(a, i)); + write (fd, line, strlen(line)); + } + sprintf (line, "\n"); + write (fd, line, strlen(line)); + return (true); +} + + +bool psVectorInit(psVector *vector, + ...) +{ + va_list argp; + psU8 vU8; + psU16 vU16; + psU32 vU32; + psU64 vU64; + psS8 vS8; + psS16 vS16; + psS32 vS32; + psS64 vS64; + psF32 vF32; + psF64 vF64; + psC32 vC32; + psC64 vC64; + + unsigned int temp; + int temp2; + + if (vector == NULL) + return (false); + + va_start (argp, vector); + + switch (vector->type.type) { + case PS_TYPE_BOOL: { + // This is a little ugly, because psVector doesn't have a boolean type yet. + int temp = va_arg(argp, int); + bool value = temp; + if (!value) { + memset(vector->data.U8, 0, vector->n * sizeof(bool)); + } else { + for (long i = 0; i < vector->n; i++) { + vector->data.U8[i] = value; + } + } + return true; + } + case PS_TYPE_U8: + temp = va_arg (argp, psU32); + if ( temp >= PS_MIN_U8 && temp <= PS_MAX_U8 ) { + vU8 = temp; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: U8 Value out of Range.\n"); + return false; + } + // Can use memset for char-size values + memset(vector->data.U8, vU8, vector->n * sizeof(psU8)); + return (true); + case PS_TYPE_F32: + vF32 = (psF32)va_arg (argp, psF64); + if (vF32 == 0.0) { + memset(vector->data.F32, 0, vector->n * sizeof(psF32)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.F32[iy] = vF32; + } + } + return (true); + case PS_TYPE_F64: + vF64 = va_arg (argp, psF64); + if (vF64 == 0.0) { + memset(vector->data.F64, 0, vector->n * sizeof(psF64)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.F64[iy] = vF64; + } + } + return (true); + case PS_TYPE_U16: + temp = va_arg (argp, psU32); + if ( temp >= PS_MIN_U16 && temp <= PS_MAX_U16 ) + vU16 = temp; + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: U16 Value out of Range.\n"); + return false; + } + if (vU16 == 0) { + memset(vector->data.U16, 0, vector->n * sizeof(psU16)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.U16[iy] = vU16; + } + } + return (true); + case PS_TYPE_U32: + vU32 = va_arg (argp, psU32); + if (vU32 == 0) { + memset(vector->data.U32, 0, vector->n * sizeof(psU32)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.U32[iy] = vU32; + } + } + return (true); + case PS_TYPE_U64: + vU64 = va_arg (argp, psU64); + if (vU64 == 0) { + memset(vector->data.U64, 0, vector->n * sizeof(psU64)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.U64[iy] = vU64; + } + } + return (true); + case PS_TYPE_S8: + temp2 = va_arg (argp, psS32); + if ( temp2 >= PS_MIN_S8 && temp2 <= PS_MAX_S8 ) + vS8 = temp2; + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: S8 Value out of Range.\n"); + return false; + } + // Can use memset for char-size values + memset(vector->data.S8, vS8, vector->n * sizeof(psS8)); + return (true); + case PS_TYPE_S16: + temp2 = va_arg (argp, psS32); + if ( temp2 >= PS_MIN_S16 && temp2 <= PS_MAX_S16 ) + vS16 = temp2; + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: S16 Value out of Range.\n"); + return false; + } + if (vS16 == 0) { + memset(vector->data.S16, 0, vector->n * sizeof(psS16)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.S16[iy] = vS16; + } + } + return (true); + case PS_TYPE_S32: + vS32 = va_arg (argp, psS32); + if (vS32 == 0) { + memset(vector->data.S32, 0, vector->n * sizeof(psS32)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.S32[iy] = vS32; + } + } + return (true); + case PS_TYPE_S64: + vS64 = va_arg (argp, psS64); + if (vS64 == 0) { + memset(vector->data.S64, 0, vector->n * sizeof(psS64)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.S64[iy] = vS64; + } + } + return (true); + case PS_TYPE_C32: + vC32 = va_arg (argp, psC32); + if (vC32 == 0) { + memset(vector->data.C32, 0, vector->n * sizeof(psC32)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.C32[iy] = vC32; + } + } + return (true); + case PS_TYPE_C64: + vC64 = va_arg (argp, psC64); + if (vC64 == 0) { + memset(vector->data.C64, 0, vector->n * sizeof(psC64)); + } else { + for (long iy = 0; iy < vector->n; iy++) { + vector->data.C64[iy] = vC64; + } + } + return (true); + default: + psError (PS_ERR_BAD_PARAMETER_TYPE, true, "datatype not defined in psImageInit\n"); + return (false); + } + return (false); +} + +#define FUNC_MACRO_VECTOR_CREATE(TYPE) \ +static psVector *vectorCreate##TYPE(const char *file, unsigned int lineno, const char *func, psVector *input, double lower, double upper, double delta) \ +{ \ + \ + int nBin = (upper - lower) / delta; \ + psVector *vec = p_psVectorRecycle(file, lineno, func, input, nBin, PS_TYPE_##TYPE); \ + vec->n = nBin; \ + for (int i = 0; i < nBin; i++) \ + { \ + vec->data.TYPE[i] = lower + (i * delta); \ + } \ + return vec; \ +} \ + +FUNC_MACRO_VECTOR_CREATE(S8) +FUNC_MACRO_VECTOR_CREATE(S16) +FUNC_MACRO_VECTOR_CREATE(S32) +FUNC_MACRO_VECTOR_CREATE(S64) +FUNC_MACRO_VECTOR_CREATE(U8) +FUNC_MACRO_VECTOR_CREATE(U16) +FUNC_MACRO_VECTOR_CREATE(U32) +FUNC_MACRO_VECTOR_CREATE(U64) +FUNC_MACRO_VECTOR_CREATE(F32) +FUNC_MACRO_VECTOR_CREATE(F64) + +psVector *p_psVectorCreate(const char *file, + unsigned int lineno, + const char *func, + psVector *input, + double lower, + double upper, + double delta, + psElemType type) +{ + psVector *out = NULL; + switch (type) { + case PS_TYPE_S8: + out = vectorCreateS8(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_S16: + out = vectorCreateS16(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_S32: + out = vectorCreateS32(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_S64: + out = vectorCreateS64(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_U8: + out = vectorCreateU8(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_U16: + out = vectorCreateU16(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_U32: + out = vectorCreateU32(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_U64: + out = vectorCreateU64(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_F32: + out = vectorCreateF32(file, lineno, func, input, lower, upper, delta); + break; + case PS_TYPE_F64: + out = vectorCreateF64(file, lineno, func, input, lower, upper, delta); + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Invalid psType for Vector Create\n"); + } + return (out); +} + +bool psVectorSet(psVector *input, + long position, + double complex value) +{ + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psVector can not be NULL.")); + return false; + } + if (position > input->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Number too large\n"); + return false; + } + if (position < 0) + position += input->n; + if (position < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + return false; + } + + if (position == input->n) { + if (position >= input->nalloc) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified position, %ld, is greater than n+1 of the vector, %ld.", + position, input->nalloc); + return false; + } + (*(psVector**)&input)->n++; + } + + switch (input->type.type) { + case PS_TYPE_U8: + input->data.U8[position] = (psU8)value; + break; + case PS_TYPE_U16: + input->data.U16[position] = (psU16)value; + break; + case PS_TYPE_U32: + input->data.U32[position] = (psU32)value; + break; + case PS_TYPE_U64: + input->data.U64[position] = (psU64)value; + break; + case PS_TYPE_S8: + input->data.S8[position] = (psS8)value; + break; + case PS_TYPE_S16: + input->data.S16[position] = (psS16)value; + break; + case PS_TYPE_S32: + input->data.S32[position] = (psS32)value; + break; + case PS_TYPE_S64: + input->data.S64[position] = (psS64)value; + break; + case PS_TYPE_F32: + input->data.F32[position] = (psF32)value; + break; + case PS_TYPE_F64: + input->data.F64[position] = (psF64)value; + break; + case PS_TYPE_C32: + input->data.C32[position] = (psC32)value; + break; + case PS_TYPE_C64: + input->data.C64[position] = (psC64)value; + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Invalid psVector Data Type\n"); + return false; + } + + return true; +} + +double complex psVectorGet(const psVector *input, + long position) +{ + if (input == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psVector can not be NULL.")); + return NAN; + } + if (position >= input->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Number too large\n"); + return NAN; + } + if(position < 0) + position += input->n; + if (position < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + return NAN; + } + switch (input->type.type) { + case PS_TYPE_U8: + return input->data.U8[position]; + break; + case PS_TYPE_U16: + return input->data.U16[position]; + break; + case PS_TYPE_U32: + return input->data.U32[position]; + break; + case PS_TYPE_U64: + return input->data.U64[position]; + break; + case PS_TYPE_S8: + return input->data.S8[position]; + break; + case PS_TYPE_S16: + return input->data.S16[position]; + break; + case PS_TYPE_S32: + return input->data.S32[position]; + break; + case PS_TYPE_S64: + return input->data.S64[position]; + break; + case PS_TYPE_F32: + return input->data.F32[position]; + break; + case PS_TYPE_F64: + return input->data.F64[position]; + break; + case PS_TYPE_C32: + return input->data.C32[position]; + break; + case PS_TYPE_C64: + return input->data.C64[position]; + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Invalid psVector Data Type\n"); + return NAN; + } + +} + +// count number of pixels with given mask value +long psVectorCountPixelMask (psVector *mask, + psMaskType value) +{ + long Npixels = 0; + if (mask == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("The input psVector can not be NULL.")); + Npixels = -1; + return Npixels; + } + + psElemType type; + type = mask->type.type; + + if (type != PS_TYPE_MASK) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "psVector type does not match the specified psMaskType!\n"); + return -1; + } + + switch (type) { + case PS_TYPE_U8: + case PS_TYPE_U16: + for (long i = 0; i < mask->n; i++) { + if (mask->data.PS_TYPE_MASK_DATA[i] & value) { + Npixels ++; + } + } + break; + case PS_TYPE_S8: + case PS_TYPE_S16: + case PS_TYPE_S32: + case PS_TYPE_S64: + case PS_TYPE_U32: + case PS_TYPE_U64: + case PS_TYPE_F32: + case PS_TYPE_F64: + case PS_TYPE_C32: + case PS_TYPE_C64: + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Input psVector is an unsupported type (0x%x)."), type); + return -1; + } + return (Npixels); +} + +long psVectorLength(const psVector *vector) +{ + if ( !psMemCheckVector((psVector*)vector) ) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Error: Specified vector is not a valid psVector \n"); + return -1; + } + return (vector->n); +} + + Index: /branches/rel-1-1/psLib/src/mathtypes/psVector.h =================================================================== --- /branches/rel-1-1/psLib/src/mathtypes/psVector.h (revision 12167) +++ /branches/rel-1-1/psLib/src/mathtypes/psVector.h (revision 12167) @@ -0,0 +1,467 @@ +/* @file psVector.h + * + * @brief basic vector definitions and operations + * + * This file defines the basic type for a vector struct and functions useful + * in manupulating vectors. + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.65 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 02:59:36 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_VECTOR_H +#define PS_VECTOR_H + +/// @addtogroup MathTypes Mathematical Structures +/// @{ + +#include +#include "psType.h" + +/** An vector to support primitive types. + * + * Struct for maintaining an vector of frequently used primitive types. + * + */ +typedef struct +{ + psMathType type; ///< Type of data. + long n; ///< Number of elements in use. + const long nalloc; ///< Total number of elements available. + union { + psS8* S8; ///< Signed 8-bit integer data. + psS16* S16; ///< Signed 16-bit integer data. + psS32* S32; ///< Signed 32-bit integer data. + psS64* S64; ///< Signed 64-bit integer data. + psU8* U8; ///< Unsigned 8-bit integer data. + psU16* U16; ///< Unsigned 16-bit integer data. + psU32* U32; ///< Unsigned 32-bit integer data. + psU64* U64; ///< Unsigned 64-bit integer data. + psF32* F32; ///< Single-precision float data. + psF64* F64; ///< Double-precision float data. + psC32* C32; ///< Single-precision complex data. + psC64* C64; ///< Double-precision complex data. + } data; + void *lock; ///< Optional lock for thread safety. +} +psVector; + +#define P_PSVECTOR_SET_NALLOC(vec,n) *(long*)&(vec->nalloc) = n + +/*****************************************************************************/ + +/* FUNCTION PROTOTYPES */ + +/*****************************************************************************/ + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psVector structure, false + * otherwise. + */ +bool psMemCheckVector( + psPtr ptr ///< the pointer whose type to check +) +; + +/** Allocate a vector, with length set to number allocated + * + * Uses psLib memory allocation functions to create a vector collection of + * data as defined by the psType type. + * + * @return psVector* Pointer to psVector. + */ +#ifdef DOXYGEN +psVector* psVectorAlloc( + long nalloc, ///< Total number of elements to make available. + psElemType type ///< Type of data to be held by vector. +); +#else // ifdef DOXYGEN +psVector* p_psVectorAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc, ///< Total number of elements to make available. + psElemType type ///< Type of data to be held by vector. +//#ifdef __GNUC__ +//) __attribute__((malloc)); +//#else // ifdef __GNUC__ +); +//#endif // ifdef __GNUC__ +#define psVectorAlloc(nalloc, type) \ + p_psVectorAlloc(__FILE__, __LINE__, __func__, nalloc, type) +#endif // ifdef DOXYGEN + + +/** Allocate a vector, with length set to zero + * + * Uses psLib memory allocation functions to create a vector collection of + * data as defined by the psType type. + * + * @return psVector* Pointer to psVector. + */ +#ifdef DOXYGEN +psVector* psVectorAllocEmpty( + long nalloc, ///< Total number of elements to make available. + psElemType type ///< Type of data to be held by vector. +); +#else // ifdef DOXYGEN +psVector* p_psVectorAllocEmpty( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc, ///< Total number of elements to make available. + psElemType type ///< Type of data to be held by vector. +//#ifdef __GNUC__ +//) __attribute__((malloc)); +//#else // ifdef __GNUC__ +); +//#endif // ifdef __GNUC__ +#define psVectorAllocEmpty(nalloc, type) \ + p_psVectorAllocEmpty(__FILE__, __LINE__, __func__, nalloc, type) +#endif // ifdef DOXYGEN + + +/** Reallocate a vector. + * + * Uses psLib memory allocation functions to reallocate a vector collection + * of data. The vector is reallocated according to the psType type member + * contained within the vector. + * + * @return psVector* Pointer to psVector. + * + */ +psVector* psVectorRealloc( + psVector* vector, ///< Vector to reallocate. + long nalloc ///< Total number of elements to make available. +); + + +/** Extend a vector's length. + * + * Increments a vector's length, n, by the specified number of elements. + * If the allocated storage is less than the current vector's length plus + * twice the number of elements to be added, it is reallocated larger by + * a given amount. + * + * @return psVector* Pointer to the adjusted psVector + */ +psVector *psVectorExtend( + psVector *vector, ///< Vector to extend + long delta, ///< Amount to expand allocation, if necessary + long nExtend ///< Number of elements to add to vector length +); + + +/** Recycle a vector. + * + * Uses psLib memory allocation functions to reallocate a vector collection + * of data. The vector is reallocated according to the psElemType type + * parameter. + * + * @return psVector* Pointer to psVector. + * + */ +#ifdef DOXYGEN +psVector* psVectorRecycle( + psVector* vector, + ///< Vector to recycle. If NULL, a new vector is created. No effort + ///< taken to preserve the values. + + long nalloc, ///< Total number of elements to make available. + psElemType type ///< the datatype of the returned vector +); +#else // ifdef DOXYGEN +psVector* p_psVectorRecycle( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psVector* vector, + ///< Vector to recycle. If NULL, a new vector is created. No effort + ///< taken to preserve the values. + + long nalloc, ///< Total number of elements to make available. + psElemType type ///< the datatype of the returned vector +); +#define psVectorRecycle(vector, nalloc, type) \ + p_psVectorRecycle(__FILE__, __LINE__, __func__, vector, nalloc, type) +#endif // ifdef DOXYGEN + + +/** Copy a vector, converting types. + * + * Performs a deep copy of the elements of one psVector to a new psVector, + * converting numeric types to a specified type. + * + * @return psVector* Pointer to resulting psVector. + * + */ +#ifdef DOXYGEN +psVector* psVectorCopy( + psVector* output, ///< if non-NULL, a psVector to recycle + const psVector* input, ///< the vector to copy. + psElemType type ///< the data type of the resulting psVector +); +#else // ifdef DOXYGEN +psVector* p_psVectorCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psVector* output, ///< if non-NULL, a psVector to recycle + const psVector* input, ///< the vector to copy. + psElemType type ///< the data type of the resulting psVector +); +#define psVectorCopy(output, input, type) \ + p_psVectorCopy(__FILE__, __LINE__, __func__, output, input, type) +#endif // ifdef DOXYGEN + + +/** Sort an array of floats. + * + * Sorts an array of floats in ascending order. This function is valid for + * all non-complex data types. + * + * @return psVector* Pointer to sorted psVector. + */ +psVector* psVectorSort( + psVector* outVector, ///< the output vector to recycle, or NULL if new vector desired. + const psVector* inVector ///< the vector to sort. +); + + +/** Creates an array of indices based on sort ordered of array. + * + * Sorts a vector and creates an integer array holding indices of + * sorted float values based on pre-sort index positions. + * + * @return psVector* vector of the indices of sort. + */ +psVector* psVectorSortIndex( + psVector* outVector, ///< vector to recycle + const psVector* inVector ///< vector to sort +); + + +/** Creates a string from a psVector's values in the form "[x0,x1,x2]". + * + * @return psPtr a newly allocated string + */ +psString psVectorToString( + const psVector* vector, ///< vector to create a string from + int maxLength ///< the maximum length of the resulting string +); + + +/** Returns an element in the vector as a psF64 value + * + * @return psF64 the value at specified position, or NAN if position is invalid. + */ +psF64 p_psVectorGetElementF64( + const psVector* vector, ///< vector to retrieve element + int position ///< the vector position to get +); + + +/** Print a vector to a stream + * + * @return bool TRUE is successful, otherwise FALSE. + */ +bool p_psVectorPrint( + int fd, ///< output file descriptor + const psVector *a, ///< vector to print + char *name ///< name of vector (for title) +); + + +/** Initializes the vector with the given value. + * + * The input data is cast to match the vector datatype, allowing for integers + * to be preserved. + * + * @return bool: True if successful, otherwise false. + */ +bool psVectorInit( + psVector *vector, ///< the vector to be initialized + ... ///< Variable argument list for initialization +); + + +/** Creates a new vector, or reallocates the provided vector if input is not NULL. + * + * The created vector consists of the data range starting at lower, running to + * upper, in steps of delta. The upper-end value is exclusive; the sequence + * is equivalent to for (x = lower; x <= upper - 1; x += delta). + * + * @return psVector*: the newly created psVector + */ +#ifdef DOXYGEN +psVector *psVectorCreate( + psVector *input, ///< Input vector + double lower, ///< lower bound + double upper, ///< upper bound + double delta, ///< size of increment + psElemType type ///< type of vector to create +); +#else // ifdef DOXYGEN +psVector *p_psVectorCreate( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psVector *input, ///< Input vector + double lower, ///< lower bound + double upper, ///< upper bound + double delta, ///< size of increment + psElemType type ///< type of vector to create +); +#define psVectorCreate(input, lower, upper, delta, type) \ + p_psVectorCreate(__FILE__, __LINE__, __func__, input, lower, upper, delta, type) +#endif // ifdef DOXYGEN + + +/** Sets the value of the input vector at the specified position to value. + * + * A negative position means index from the end. + * + * @return bool: True if successful, otherwise false. + */ +bool psVectorSet( + psVector *input, ///< Input vector to set + long position, ///< vector position + double complex value ///< value to set +); + + +/** Returns the value of the input vector at the specified position. + * + * A negative position means index from the end. + * + * @return complex: Value of the input vector at the specified position. + */ +double complex psVectorGet( + const psVector *input, ///< Input vector from which to get value + long position ///< vector position +); + + +/** Returns the number of pixels in the vector which satisfy any of the mask bits. + * + * An error (eg, invalid vector) results in a return value of -1. The vector + * must be U8. + * + * @return long: the number of pixels counted + */ +long psVectorCountPixelMask( + psVector *mask, ///< input vector to count + psMaskType value ///< the mask value to satisfy +); + + +/** Get the number of elements in use from a specified psVector. (vector.n) + * + * @return long: The number of elements in use. + */ +long psVectorLength( + const psVector *vector ///< input psVector +); + + +/***************************************************************************** + PS_VECTOR macros: + *****************************************************************************/ + +#define PS_ASSERT_VECTOR_NON_NULL(NAME, RVAL) PS_ASSERT_GENERAL_VECTOR_NON_NULL(NAME, return RVAL) +#define PS_ASSERT_GENERAL_VECTOR_NON_NULL(NAME, CLEANUP) \ +if ((NAME) == NULL || (NAME)->data.U8 == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: psVector %s or its data is NULL.", \ + #NAME); \ + CLEANUP; \ +} \ + +#define PS_ASSERT_VECTOR_NON_EMPTY(NAME, RVAL) PS_ASSERT_GENERAL_VECTOR_NON_EMPTY(NAME, return RVAL) +#define PS_ASSERT_GENERAL_VECTOR_NON_EMPTY(NAME, CLEANUP) \ +if ((NAME)->n < 1) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "Unallowable operation: psVector %s has no elements.", \ + #NAME); \ + CLEANUP; \ +} \ + +#define PS_ASSERT_VECTOR_TYPE_F32_OR_F64(NAME, RVAL) \ +if (((NAME)->type.type != PS_TYPE_F32) && ((NAME)->type.type != PS_TYPE_F64)) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "psVector %s: bad type(%d)", \ + #NAME, (NAME)->type.type); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_VECTOR_TYPE_S16_S32_F32(NAME, RVAL) \ +if (((NAME)->type.type != PS_TYPE_S16) && ((NAME)->type.type != PS_TYPE_S32) && ((NAME)->type.type != PS_TYPE_F32)) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "psVector %s: bad type(%d)", \ + #NAME, (NAME)->type.type); \ + return(RVAL); \ +} \ + +#define PS_ASSERT_VECTOR_TYPE(NAME, TYPE, RVAL) \ +if ((NAME)->type.type != TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: psVector %s has incorrect type.", \ + #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_VECTORS_SIZE_EQUAL(VEC1, VEC2, RVAL) \ +if ((VEC1)->n != (VEC2)->n) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "psVector %s has size %ld, psVector %s has size %ld.", \ + #VEC1, (VEC1)->n, #VEC2, (VEC2)->n); \ + return(RVAL); \ +} + +#define PS_ASSERT_VECTOR_SIZE(VEC, SIZE, RVAL) \ +if ((VEC)->n != (SIZE)) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "psVector %s has size %ld, should be %ld.", \ + #VEC, (VEC)->n, (SIZE)); \ + return(RVAL); \ +} + +#define PS_ASSERT_VECTOR_TYPE_EQUAL(VEC1, VEC2, RVAL) \ +if ((VEC1)->type.type != (VEC2)->type.type) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "psVector %s has size %d, psVector %s has size %d.", \ + #VEC1, (VEC1)->type.type, #VEC2, (VEC2)->type.type); \ + return(RVAL); \ +} + +#define PS_VECTOR_PRINT_F32(NAME) \ +if ((NAME) != NULL) { \ + for (int i = 0; i < (NAME)->n; i++) { \ + printf("%s->data.F32[%d] is %f\n", #NAME, i, (NAME)->data.F32[i]); \ + } \ + printf("\n"); \ +} else {\ + printf("MACRO WARNING: vector %s is NULL.\n", #NAME); \ +}\ + +#define PS_VECTOR_PRINT_F64(NAME) \ +if ((NAME) != NULL) { \ + for (int i = 0; i < (NAME)->n; i++) { \ + printf("%s->data.F64[%d] is %f\n", #NAME, i, (NAME)->data.F64[i]); \ + } \ + printf("\n"); \ +} else {\ + printf("MACRO WARNING: vector %s is NULL.\n", #NAME); \ +}\ + +/// @} +#endif // #ifndef PS_VECTOR_H Index: /branches/rel-1-1/psLib/src/psErrorCodes_en.dat =================================================================== --- /branches/rel-1-1/psLib/src/psErrorCodes_en.dat (revision 12167) +++ /branches/rel-1-1/psLib/src/psErrorCodes_en.dat (revision 12167) @@ -0,0 +1,23 @@ +# +# This file is used to generate psErrorCode.h content +# +# Format: +# ERROR_CLASS_NAME ERROR_CLASS_DESCRIPTION +# +# Note: the ERROR_CLASS_NAME will appear in the code with a "PS_ERR_" prefix +# +UNKNOWN unknown error +IO I/O error +LOCATION_INVALID specified location is unknown +MEMORY_CORRUPTION memory corruption detected +MEMORY_DEREF_USAGE dereferenced memory still used +BAD_PARAMETER_VALUE parameter is out-of-range +BAD_PARAMETER_TYPE parameter is of unsupported type +BAD_PARAMETER_NULL parameter is null +BAD_PARAMETER_SIZE size of parameter's data is outside of acceptable range. +UNEXPECTED_NULL unexpected NULL found +OS_CALL_FAILED unexpected result from an OS standard library call. +BAD_FITS file doesn't obey FITS standard +IEEE a NaN or Inf was detected +DB_CLIENT Database error originated in the client library +DB_SERVER Database error generated by the server Index: /branches/rel-1-1/psLib/src/pslib.h =================================================================== --- /branches/rel-1-1/psLib/src/pslib.h (revision 12167) +++ /branches/rel-1-1/psLib/src/pslib.h (revision 12167) @@ -0,0 +1,21 @@ +/** @file pslib.h +* +* @brief Contains the complete list of header files for pslib. +* +* This header file includes all the necessary header files for a user to +* user all public functions within the pslib library. +* +* @author Eric Van Alst, MHPCC +* +* @version $Revision: 1.36 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-06-08 23:40:45 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PS_LIB_H +#define PS_LIB_H + +#include "pslib_strict.h" + +#endif // #ifndef PS_LIB_H Index: /branches/rel-1-1/psLib/src/pslib_strict.h =================================================================== --- /branches/rel-1-1/psLib/src/pslib_strict.h (revision 12167) +++ /branches/rel-1-1/psLib/src/pslib_strict.h (revision 12167) @@ -0,0 +1,107 @@ +/** @file pslib_strict.h +* +* @brief Contains the complete list of header files for pslib while poisoning +* the use of standard memory allocation routines. +* +* This header file includes all the necessary header files for a user to +* user all public functions within the pslib library. +* +* @author Eric Van Alst, MHPCC +* +* @version $Revision: 1.27 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 21:55:28 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PS_LIB_STRICT_H +#define PS_LIB_STRICT_H + +#ifdef PS_LIB_H /* this is included from pslib.h, so don't poison anything */ +#ifndef PS_ALLOW_MALLOC +#define PS_ALLOW_MALLOC +#endif // #ifndef PS_ALLOW_MALLOC +#else +#undef PS_ALLOW_MALLOC /* don't allow code to not poison malloc, i.e., strict poisioning */ +#endif // #else + +#include "psTime.h" +#include "psCoord.h" +#include "psSphereOps.h" +#include "psEarthOrientation.h" + +#include "psDB.h" + +#include "psVectorFFT.h" +#include "psImageFFT.h" + +#include "psFits.h" +#include "psFitsHeader.h" +#include "psFitsImage.h" +#include "psFitsTable.h" + +//#include "psXML.h" + +#include "psImageConvolve.h" +#include "psImageGeomManip.h" +#include "psImagePixelExtract.h" +#include "psImagePixelManip.h" +#include "psImageStats.h" +#include "psImageStructManip.h" +#include "psImageMaskOps.h" +#include "psImageUnbin.h" + +#include "psImageJpeg.h" + +#include "psAssert.h" +#include "psBinaryOp.h" +#include "psCompare.h" +#include "psConstants.h" +#include "psExit.h" +#include "psMatrix.h" +#include "psMD5.h" +#include "psMinimizeLMM.h" +#include "psMinimizePowell.h" +#include "psMinimizePolyFit.h" +#include "psRandom.h" +#include "psRegion.h" +#include "psRegionForImage.h" +#include "psPolynomial.h" +#include "psPolynomialMetadata.h" +#include "psPolynomialUtils.h" +#include "psSpline.h" +#include "psStats.h" +#include "psHistogram.h" +#include "psUnaryOp.h" +#include "psMathUtils.h" +#include "psImage.h" +#include "psScalar.h" +#include "psVector.h" +#include "psAbort.h" +#include "psConfigure.h" +#include "psError.h" +#include "psErrorCodes.h" +#include "psLogMsg.h" +#include "psMemory.h" +#include "psString.h" +#include "psLine.h" +#include "psTrace.h" +#include "psType.h" +#include "psArray.h" +#include "psBitSet.h" +#include "psHash.h" +#include "psList.h" +#include "psLookupTable.h" +#include "psMetadata.h" +#include "psMetadataConfig.h" +#include "psMetadataItemParse.h" +#include "psMetadataItemCompare.h" +#include "psPixels.h" +#include "psArguments.h" +#include "psVectorSmooth.h" +#include "psImageBackground.h" +#include "psEllipse.h" +#include "psSparse.h" +#include "psSlurp.h" + +#endif // #ifndef PS_LIB_STRICT_H Index: /branches/rel-1-1/psLib/src/sys/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/sys/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/.cvsignore (revision 12167) @@ -0,0 +1,12 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +psErrorCodes.c +psErrorCodes.h +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/sys/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/sys/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/Makefile.am (revision 12167) @@ -0,0 +1,47 @@ +#Makefile for sys functions of psLib +# +noinst_LTLIBRARIES = libpslibsys.la + +libpslibsys_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(CFITSIO_CFLAGS) +libpslibsys_la_SOURCES = \ + psAbort.c \ + psConfigure.c \ + psError.c \ + psErrorCodes.c \ + psLine.c \ + psLogMsg.c \ + psMemory.c \ + psSlurp.c \ + psString.c \ + psTrace.c \ + psType.c \ + strcasestr.c + +EXTRA_DIST = sys.i psErrorCodes.c.in psErrorCodes.h.in + +BUILT_SOURCES = psErrorCodes.c + +psErrorCodes.c: ../psErrorCodes_$(PS_LANG).dat psErrorCodes.c.in psErrorCodes.h + $(top_srcdir)/utils/psParseErrorCodes --data=../psErrorCodes_$(PS_LANG).dat $@ + +psError.h: psErrorCodes.h + +psErrorCodes.h: ../psErrorCodes_$(PS_LANG).dat psErrorCodes.h.in + $(top_srcdir)/utils/psParseErrorCodes --data=../psErrorCodes_$(PS_LANG).dat $@ + +pkginclude_HEADERS = \ + psAbort.h \ + psAssert.h \ + psConfigure.h \ + psError.h \ + psErrorCodes.h \ + psExit.h \ + psLine.h \ + psLogMsg.h \ + psMemory.h \ + psSlurp.h \ + psString.h \ + psTrace.h \ + psType.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/sys/psAbort.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psAbort.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psAbort.c (revision 12167) @@ -0,0 +1,50 @@ + +/** @file psAbort.c + * + * @brief Contains the definition for abort function + * + * The abort logging and handling shall be performed by psAbort function. + * This will allow for consistent handling of other software units + * needing to abort from program execution. + * + * @author Eric Van Alst, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.15 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psAbort.h" +#include "psError.h" +#include "psLogMsg.h" + +void p_psAbort(const char *file, + unsigned int lineno, + const char *func, + const char *format, + ...) +{ + psErrorStackPrint(stderr, "Aborting. Error stack:"); + + va_list argPtr; // variable list arguement pointer + // Get the variable list parameters to pass to logging function + va_start(argPtr, format); + + // Call logging function with PS_LOG_ABORT level + psLogMsgV("psLib.sys", PS_LOG_ABORT, format, argPtr); + + // Clean up stack after variable arguement has been used + va_end(argPtr); + + // Call system abort function to terminate program execution + abort(); +} Index: /branches/rel-1-1/psLib/src/sys/psAbort.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psAbort.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psAbort.h (revision 12167) @@ -0,0 +1,59 @@ +/** @file psAbort.h + * + * @brief Contains the declarations for the abort function + * + * The abort logging and handling shall be performed by psAbort function. + * This will allow for consistent handling of other software units + * needing to abort from program execution. + * + * @author Eric Van Alst, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * $Revision: 1.14 $ $Name: not supported by cvs2svn $ + * $Date: 2007-02-07 23:52:54 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ABORT_H +#define PS_ABORT_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include + +/** Reports an abort message to logging facility + * + * This function will invoke the psLogMsg function with a level of + * PS_LOG_ABORT and pass the parameters name and fmt to generate a proper + * log message. After logging, this function will call system abort + * function to abnormally terminate the program. + * + * @return void No return value + * + */ +#ifdef DOXYGEN +void psAbort( + const char *format, ///< A printf style formatting statement + ... +); +#else // ifdef DOXYGEN +void p_psAbort( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *format, ///< A printf style formatting statement + ... +#ifdef __GNUC__ +) __attribute__((format(printf, 4, 5), noreturn)); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psAbort(...) \ + p_psAbort(__FILE__, __LINE__, __func__, __VA_ARGS__) +#endif // iddef SWIG +#endif // ifdef DOXYGEN + +/// @} +#endif // #ifndef PS_ABORT_H Index: /branches/rel-1-1/psLib/src/sys/psAssert.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psAssert.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psAssert.h (revision 12167) @@ -0,0 +1,269 @@ +#ifndef PS_ASSERT_H +#define PS_ASSERT_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include +#include +#include + +#include "psMemory.h" +#include "psError.h" +#include "psLogMsg.h" + +// Ensure this is a psLib pointer, by checking for the memblock bounds. +#define PS_ASSERT_PTR(NAME, RVAL) \ +{ \ + if (NAME == NULL) return(RVAL); \ + psMemBlock *mb = (psMemBlock*)(NAME) - 1; \ + if (mb->startblock != P_PS_MEMMAGIC || mb->endblock != P_PS_MEMMAGIC || \ + *(psU32 *)((char *)(mb + 1) + mb->userMemorySize) != P_PS_MEMMAGIC) { \ + psError(PS_ERR_MEMORY_CORRUPTION, false, \ + "Error: Pointer %s is corrupted or not on the PS memory system.", \ + #NAME); \ + return (RVAL); \ + } \ +} + +#define PS_ASSERT_INT_UNEQUAL(NAME1, NAME2, RVAL) \ +if ((NAME1) == (NAME2)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s and %s are equal.", \ + #NAME1, #NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_EQUAL(NAME1, NAME2, RVAL) \ +if ((NAME1) != (NAME2)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s and %s are not equal.", \ + #NAME1, #NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_NONNEGATIVE(NAME, RVAL) \ +if ((NAME) < 0) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: %s is less than 0.", #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_POSITIVE(NAME, RVAL) \ +if ((NAME) < 1) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s is 0 or less.", #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_ZERO(NAME, RVAL) \ +if ((NAME) != 0) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s is 0.", #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_NONZERO(NAME, RVAL) \ +if ((NAME) == 0) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s is 0.", #NAME); \ + return(RVAL); \ +} + +// XXX: Where did these int casts come from? +#define PS_ASSERT_INT_WITHIN_RANGE(NAME, LOWER, UPPER, RVAL) \ +if ((int)(NAME) < LOWER || (int)(NAME) > UPPER) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s, %d, is out of range. Must be between %d and %d.", \ + #NAME,(int)NAME,LOWER,UPPER); \ + return RVAL; \ +} + +#define PS_ASSERT_INT_LESS_THAN(VAR1, VAR2, RVAL) \ +if (!(VAR1 < VAR2)) { \ + psError(PS_ERR_UNKNOWN, true, \ + "Error: %s is not less than %s (%d, %d)", #VAR1, #VAR2, VAR1, VAR2); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_LESS_THAN_OR_EQUAL(VAR1, VAR2, RVAL) \ +if (!(VAR1 <= VAR2)) { \ + psError(PS_ERR_UNKNOWN, true, \ + "Error: %s is not less than %s (%d, %d)", #VAR1, #VAR2, VAR1, VAR2); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_LARGER_THAN(NAME1, NAME2, RVAL) \ +if (!((NAME1) > (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s > %s) (%d %d).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(NAME1, NAME2, RVAL) \ +if (!((NAME1) >= (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s >= %s) (%d %d).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} +#define PS_ASSERT_FLOAT_LARGER_THAN(NAME1, NAME2, RVAL) \ +if (!((NAME1) > (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s > %s) (%f %f).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_FLOAT_LARGER_THAN_OR_EQUAL(NAME1, NAME2, RVAL) \ +if (!((NAME1) >= (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s >= %s) (%f %f).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_FLOAT_LESS_THAN(NAME1, NAME2, RVAL) \ +if (!((NAME1) < (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s < %s) (%f %f).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_FLOAT_LESS_THAN_OR_EQUAL(NAME1, NAME2, RVAL) \ +if (!((NAME1) <= (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: !(%s <= %s) (%f %f).", \ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_FLOAT_NON_EQUAL(NAME1, NAME2, RVAL) \ +if (fabs((NAME2) - (NAME1)) < FLT_EPSILON) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s and %s are equal.", \ + #NAME1, #NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_FLOAT_EQUAL(NAME1, NAME2, RVAL) \ +if (fabs((NAME2) - (NAME1)) > FLT_EPSILON) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s and %s are not equal.", \ + #NAME1, #NAME2); \ + return(RVAL); \ +} + +// Return an error if the arg lies outside the supplied range. +#define PS_ASSERT_FLOAT_WITHIN_RANGE(NAME, LOWER, UPPER, RVAL) \ +if ((NAME) < (LOWER) || (NAME) > (UPPER)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s, %f, is out of range. Must be between %f and %f.", \ + #NAME, NAME, LOWER, UPPER); \ + return RVAL; \ +} + +#define PS_ASSERT_FLOAT_REAL(NAME, RVAL) \ +if (!isfinite(NAME)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s=%f is not a real value.\n", \ + #NAME, NAME); \ + return RVAL; \ +} + +#define PS_ASSERT_DOUBLE_WITHIN_RANGE(NAME, LOWER, UPPER, RVAL) \ +if ((NAME) < (LOWER) || (NAME) > (UPPER)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s, %lf, is out of range. Must be between %lf and %lf.", \ + #NAME, NAME, LOWER, UPPER); \ + return RVAL; \ +} + +#define PS_ASSERT_LONG_WITHIN_RANGE(NAME, LOWER, UPPER, RVAL) \ +if ((NAME) < (LOWER) || (NAME) > (UPPER)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s, %ld, is out of range. Must be between %ld and %ld.", \ + #NAME, NAME, LOWER, UPPER); \ + return RVAL; \ +} + +#define PS_ASSERT_LONG_LARGER_THAN_OR_EQUAL(NAME1, NAME2, RVAL) \ +if (!((NAME1) >= (NAME2))) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Error: !(%s >= %s) (%ld %ld).",\ + #NAME1, #NAME2, NAME1, NAME2); \ + return(RVAL); \ +} + +#define PS_ASSERT_S64_WITHIN_RANGE(NAME, LOWER, UPPER, RVAL) \ +if ((NAME) < (LOWER) || (NAME) > (UPPER)) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: %s, %" PRId64 ", is out of range. Must be between %" PRId64 " and %" PRId64 ".", \ + #NAME, NAME, LOWER, UPPER); \ + return RVAL; \ +} + +/***************************************************************************** +Macros which take a generic psLib type and determine if it is NULL, or has +the wrong type. +*****************************************************************************/ +#define PS_WARN_PTR_NON_NULL(NAME) \ +if ((NAME) == NULL) { \ + psLogMsg(__func__, PS_LOG_WARN, "WARNING: %s is NULL.", #NAME); \ +} \ + +#define PS_ASSERT_PTR_NON_NULL(NAME, RVAL) PS_ASSERT_GENERAL_PTR_NON_NULL(NAME, return RVAL) +#define PS_ASSERT_GENERAL_PTR_NON_NULL(NAME, CLEANUP) \ +if ((NAME) == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: %s is NULL.", \ + #NAME); \ + CLEANUP; \ +} + +#define PS_ASSERT_PTR_TYPE(NAME, TYPE, RVAL) \ +if ((NAME)->type.type != TYPE) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: %s has incorrect type.", \ + #NAME); \ + return(RVAL); \ +} + +#define PS_ASSERT_PTR_DIMEN(NAME, DIMEN, RVAL) PS_ASSERT_GENERAL_PTR_DIMEN(NAME, DIMEN, return RVAL) +#define PS_ASSERT_GENERAL_PTR_DIMEN(NAME, DIMEN, CLEANUP) \ +if ((NAME)->type.dimen != DIMEN) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: %s has incorrect dimensionality.", \ + #NAME); \ + CLEANUP; \ +} + +#define PS_ASSERT_PTR_DIMEN_GENERAL_NOT(NAME, DIMEN, CLEANUP) \ +if ((NAME)->type.dimen == DIMEN) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "Unallowable operation: %s has incorrect dimensionality.", \ + #NAME); \ + CLEANUP; \ +} + + +#define PS_ASSERT_PTRS_SIZE_EQUAL(PTR1, PTR2, RVAL) \ +if (PTR1->n != PTR2->n) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "ptr %s has size %d, ptr %s has size %d.", \ + #PTR1, PTR1->n, #PTR2, PTR2->n); \ + return(RVAL); \ +} + +#define PS_ASSERT_PTR_TYPE_EQUAL(PTR1, PTR2, RVAL) PS_ASSERT_PTRS_TYPE_EQUAL_GENERAL(PTR1, PTR2, return RVAL) +#define PS_ASSERT_PTRS_TYPE_EQUAL_GENERAL(PTR1, PTR2, CLEANUP) \ +if (PTR1->type.type != PTR2->type.type) { \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, \ + "ptr %s has type %d, ptr %s has type %d.", \ + #PTR1, PTR1->type.type, #PTR2, PTR2->type.type); \ + CLEANUP; \ +} + + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/sys/psConfigure.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psConfigure.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psConfigure.c (revision 12167) @@ -0,0 +1,147 @@ +/** @file psConfigure.c + * + * @brief Contains the declarations for initialization, memory finalization, + * and configuration. + * + * These functions initalize psLib data before the beginning of a run and + * remove (finalize) the same data after the run is complete. A function is + * also provided to return the current psLib version. + * + * @ingroup Configure + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.23 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 23:28:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include "psTrace.h" +#include "psString.h" +#include "psTime.h" +#include "psEarthOrientation.h" +#include "psError.h" +#include "psConfigure.h" +#include "psMemory.h" + +static char *memCheckName = NULL; // Filename to which to write results of mem check +static FILE *memCheckFile = NULL; // File to which to write results of mem check + +static const char *cvsTag = "$Name: not supported by cvs2svn $"; // CVS tag name + +psString psLibVersion(void) +{ + psString version = NULL; // Version, to return + psStringAppend(&version, "%s-%s",PACKAGE_NAME,PACKAGE_VERSION); + return version; +} + +psString psLibVersionLong(void) +{ + psString version = psLibVersion(); // Version, to return + psString tag = psStringStripCVS(cvsTag, "Name"); // CVS tag + +#ifdef HAVE_PSDB + psStringAppend(&version, " (cvs tag %s), %s, %s with psDB", tag, __DATE__, __TIME__); +#else + psStringAppend(&version, " (cvs tag %s), %s, %s without psDB", tag, __DATE__, __TIME__); +#endif + psFree(tag); + return version; +} + +// Check the memory; intended for use on exit, but might be used elsewhere +void p_psMemoryCheck(void) +{ + if (!memCheckName || strlen(memCheckName) == 0) { + return; + } + + memCheckFile = fopen(memCheckName, "w"); // File to write leaks to + if (!memCheckFile) { + psError(PS_ERR_IO, true, "Unable to open leaks file, %s\n", memCheckName); + return; + } + + int nLeaks = psMemCheckLeaks(0, NULL, memCheckFile, false); // Number of leaks + if (nLeaks > 0) { + psLogMsg(__func__, PS_LOG_WARN, "%d memory leaks found; list written to %s.\n", nLeaks, memCheckName); + } else { + psLogMsg(__func__, PS_LOG_INFO, "No memory leaks found.\n"); + } + + int nCorrupted; // Number of corrupted memory blocks + nCorrupted = psMemCheckCorruption(memCheckFile, false); + if (nCorrupted > 0) { + psError(PS_ERR_UNKNOWN, true, "%d memory blocks corrupted; list written to %s.\n", nCorrupted, memCheckName); + } else { + psLogMsg(__func__, PS_LOG_INFO, "No memory corruption found.\n"); + } + + fclose(memCheckFile); + + return; +} + + +void psLibInit(const char* timeConfig) +{ + // XXX: Still needs error codes to be set + + if (timeConfig && strlen(timeConfig) > 0) { + if (!p_psTimeInit(timeConfig)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to initialize %s."), "psTime"); + return; + } + } + if (!p_psEOCInit()) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to initialize %s."), "psEOC"); + return; + } + + // Does the user want memory checking at exit? + memCheckName = getenv("PS_ALLOC_CHECK"); // The value of PS_ALLOC_CHECK + if (memCheckName && strlen(memCheckName) > 0) { + atexit(&p_psMemoryCheck); + } +} + +void psLibFinalize(void) +{ + // Users of persistent memory should free them in this function + + // Stop timers + psTimerStop(); + + // Free the time tables + if (!p_psTimeFinalize()) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to finalize %s."), "psTime"); + return; + } + + // Free the precession tables + if (!p_psEOCFinalize()) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to finalize %s."), "psEOC"); + return; + } + + // Free the trace system + psTraceReset(); + + // Free the error system + psErrorClear(); + +} Index: /branches/rel-1-1/psLib/src/sys/psConfigure.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psConfigure.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psConfigure.h (revision 12167) @@ -0,0 +1,74 @@ +/** @file psConfigure.h + * + * @brief Functions to init and cleanup psLib + * + * These functions initalize psLib data before the beginning of a run and + * remove (finalize) the same data after the run is complete. A function is + * also provided to return the current psLib version. + * + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_CONFIGURE_H +#define PS_CONFIGURE_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +/** Get current psLib version + * + * Returns the current psLib version name as a string. + * + * @return psString: String with version name. + */ +psString psLibVersion( + void +); + + +/** Get current psLib version (full identification) + * + * Returns the current psLib version name and other information identifying the compilation. + * + * @return psString: String with identity. + */ +psString psLibVersionLong(void); + + +/** Initializes persistent memory. + * + * Creates persistant memory items used throughout psLib. Items created + * within this method should be freed with the psLibFinalize function. + * current, a non-NULL psErr is returned with code PS_ERR_NONE. + * + */ +void psLibInit( + const char* timeConfig ///< Filename of config file for psTime. +); + + +/** Removes persistant memory created with the psLibInit function. + * + * The memory created but not freed by psLib modules should be freed + * within this function at the end of a psLib execution cycle. + * + * @return void: void. + */ +void psLibFinalize( + void +); + + +// Check the memory; intended for use on exit, but might be used elsewhere +void p_psMemoryCheck(void); + + +/// @} +#endif // #ifndef PS_CONFIGURE_H Index: /branches/rel-1-1/psLib/src/sys/psError.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psError.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psError.c (revision 12167) @@ -0,0 +1,316 @@ +/** @file psError.c + * + * @brief Contains the definitions for the error reporting functions + * + * Error reporting functions shall be used to create log entries in the + * event errors are detected. The messages shall give enough information + * to allow the user to know where the error has occurred and the type + * of error detected. + * + * @author Joshua Hoblitt, University of Hawaii + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.45 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psLogMsg.h" +#include "psError.h" +#include "psString.h" +#include "psTrace.h" +#include "psAbort.h" +#include "psMemory.h" + +#define MAX_STRING_LENGTH 2048 +#define MAX_ERROR_STACK_SIZE 64 + +static pthread_mutex_t lockErrorStack = PTHREAD_MUTEX_INITIALIZER; +static bool errorStackKeyInitialized = false; +static pthread_key_t errorStack_key; + +static void psFreeWrapper(void *ptr); +static void psErrorStackPush(psErr* err); +static psArray *psErrorStackGet(void); +static void psErrFree(psErr* err); + +// needed for pthread_key_create() because p_psFree() does not match free()'s +// prototype +// XXX does something like this need to be global in psMmemory.h +static void psFreeWrapper(void *ptr) +{ + psFree(ptr); +} + +static void psErrorStackPush(psErr* err) +{ + psArray *errorStack = psErrorStackGet(); + + // push the item onto the stack and increment the error count + if (psArrayLength(errorStack) < MAX_ERROR_STACK_SIZE) { + // make the psErr persistent + psMemSetPersistent(err, true); + psMemSetPersistent(err->msg, true); + psMemSetPersistent(err->name, true); + + psArrayAdd(errorStack, 0, err); + } else { + psAbort("attempt to exceed maximum error stack depth of %ld", + (long)MAX_ERROR_STACK_SIZE); + } +} + +static psArray *psErrorStackGet(void) +{ + // check to see if the error stack key has been initialized + pthread_mutex_lock(&lockErrorStack); + if (errorStackKeyInitialized == false) { + // note that each error stack will automatically be free'd when it's + // thread exits + if (pthread_key_create(&errorStack_key, psFreeWrapper)) { + psAbort("pthread_key_create failed()"); + } + errorStackKeyInitialized = true; + } + pthread_mutex_unlock(&lockErrorStack); + + // check to see if the error stack for this thread has been allocated + psArray *errorStack = NULL; + if ((errorStack = pthread_getspecific(errorStack_key)) == NULL) { + // allocate the error stack + errorStack = psArrayAllocEmpty(MAX_ERROR_STACK_SIZE); + psMemSetPersistent(errorStack, true); + psMemSetPersistent(errorStack->data, true); + // store this threads error stack + // note that pthread_setspecifc() does not take a pointer as the first + // param + if (pthread_setspecific(errorStack_key, errorStack)) { + psAbort("pthread_setspecific() failed"); + } + } + + return errorStack; +} + +// This function serves the same purpose of psErrorStackGet() accept it does +// not alloc the error stack if it DOES NOT already exist. Unlike +// psErrorStackGet(), this function is NOT guarenteed to return a valid pointer +// and it's return status must be checked. +static psArray *psErrorStackGetNoAlloc(void) +{ + // check to see if the error stack key has been initialized + pthread_mutex_lock(&lockErrorStack); + if (errorStackKeyInitialized == false) { + return NULL; + } + pthread_mutex_unlock(&lockErrorStack); + + // check to see if the error stack for this thread has been allocated + psArray *errorStack = NULL; + if ((errorStack = pthread_getspecific(errorStack_key)) == NULL) { + return NULL; + } + + return errorStack; +} + +static void psErrFree(psErr* err) +{ + if (err != NULL) { + psFree(err->msg); + psFree(err->name); + } +} + +psErr* psErrAlloc(const char* name, psErrorCode code, const char* msg) +{ + psErr* err = psAlloc(sizeof(psErr)); + err->msg = psStringCopy(msg); + err->name = psStringCopy(name); + err->code = code; + + psMemSetDeallocator(err, (psFreeFunc)psErrFree); + + return err; +} + +psErrorCode p_psError(const char* filename, + unsigned int lineno, + const char* func, + psErrorCode code, + bool new, + const char* format, + ...) +{ + char errMsg[MAX_STRING_LENGTH]; + char msgName[MAX_STRING_LENGTH]; + + // if this the origin of a new error reset the error stack + if (new) { + psErrorClear(); + } + + snprintf(msgName, MAX_STRING_LENGTH, "%s (%s:%d)", func, filename, lineno); + + va_list ap; + va_start(ap, format); + + vsnprintf(errMsg, MAX_STRING_LENGTH, format, ap); + + va_end(ap); + + // Remove a single trailing \n from message -- it interferes with + // psErrorStackPrint + size_t len = strlen(errMsg); + if (len > 0 && errMsg[len - 1] == '\n') { + errMsg[len - 1] = '\0'; + } + + psErr *err = psErrAlloc(msgName, code, errMsg); + psErrorStackPush(err); + + #ifndef PS_NO_TRACE + // Call tracing function with PS_LOG_ERROR level + // p_psTrace() automatically appends the the function name to the facility + // for us + p_psTrace(__FILE__, __LINE__, func, "err", PS_LOG_ERROR, "%s : %s", err->name, err->msg); + #endif + + psFree(err); + + return code; +} + +void p_psWarning(const char* file, + int lineno, + const char* func, + const char* format, + ...) +{ + char msgName[MAX_STRING_LENGTH]; + + snprintf(msgName, MAX_STRING_LENGTH, "%s (%s:%d)", func, file, lineno); + + va_list ap; + va_start(ap, format); + + psLogMsgV(msgName, PS_LOG_WARN, format, ap); + + va_end(ap); + + return; +} + +psErr* psErrorGet(long which) +{ + psErr* result; + + psArray *errorStack = psErrorStackGet(); + + // Check for negative reference and if found return PS_ERR_NONE + if (which < 0 ) { + result = psErrAlloc("", PS_ERR_NONE, ""); + } else { + // the which input is from the end of errorStack + which = psArrayLength(errorStack) - 1 - which; + if (which < 0 || which >= psArrayLength(errorStack)) { + // no error at the given location + result = psErrAlloc("", PS_ERR_NONE, ""); + } else { + // a new reference passed back + result = psMemIncrRefCounter(errorStack->data[which]); + } + } + + return result; +} + +long psErrorGetStackSize() +{ + psArray *errorStack = psErrorStackGet(); + + return psArrayLength(errorStack); +} + +psErr* psErrorLast(void) +{ + return psErrorGet(0); +} + +psErrorCode psErrorCodeLast(void) +{ + psErr *err = psErrorGet(0); + psErrorCode code = err->code; + psFree(err); + + return code; +} + +void psErrorClear(void) +{ + psArray *errorStack = psErrorStackGet(); + + for (long i = 0; i < psArrayLength(errorStack); i++) { + psErr *err = errorStack->data[i]; + + psMemSetPersistent(err, false); + psMemSetPersistent(err->msg, false); + psMemSetPersistent(err->name, false); + } + + psArrayElementsFree(errorStack); +} + +void psErrorStackPrint(FILE *fd, const char *format, ...) +{ + if (fd == NULL) { + fd = stdout; + } + + va_list ap; // variable list arguement pointer + + va_start(ap, format); + + psErrorStackPrintV(fd, format, ap); + + va_end(ap); +} + +// This function does not allocate any memory so it is safe to call from inside +// of psMemory.c. Do not allocate memory in function (or call any functions +// that do) without first removing it's use from psMemory.c. +void psErrorStackPrintV(FILE *fd, const char *format, va_list va) +{ + psArray *errorStack = psErrorStackGetNoAlloc(); + // do nothing if the error stack has not been allocated + if (!errorStack) { + return; + } + + vfprintf(fd, format, va); + + for (long i = 0; i < psArrayLength(errorStack); i++) { + psErr *err = errorStack->data[i]; + if(err->code >= PS_ERR_BASE) { + fprintf(fd," -> %s: %s\n %s\n", + err->name, + psErrorCodeString(err->code), + err->msg); + } else { + fprintf(fd," -> %s: %s\n %s\n", + err->name, + strerror(err->code), + err->msg); + } + } +} + Index: /branches/rel-1-1/psLib/src/sys/psError.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psError.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psError.h (revision 12167) @@ -0,0 +1,209 @@ +/** @file psError.h + * + * @brief error reporting functions + * + * Error reporting functions shall be used to create log entries in the + * event errors are detected. The messages shall give enough information + * to allow the user to know where the error has occurred and the type + * of error detected. + * + * @author RHL, Princeton + * @author Eric Van Alst, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.35 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ERROR_H +#define PS_ERROR_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include +#include +#include + +#include "psErrorCodes.h" + +#define _(string) string + +/** Error message object */ +typedef struct +{ + char* name; ///< category of code that caused the error + psErrorCode code; ///< class of error + char* msg; ///< the message associated with the error +} +psErr; + + +/** Get a error from the error stack + * + * Previous errors on the stack are returned by psErrorGet (a value of 0 + * passed to psErrorGet is equivalent to a call to psErrorLast). + * + * if no error is at the which position, a non-NULL psErr is returned with + * code PS_ERR_NONE. + * + * @return Error message object at 'which' + */ +psErr* psErrorGet( + long which ///< position in the error stack. 0 is last error on stack. +); + + +/** Get last error put on the error stack + * + * The last error reported is available from psErrorLast; if no errors are + * current, a non-NULL psErr is returned with code PS_ERR_NONE. + * + * @return psErr* Reference to last error message on error stack + */ +psErr* psErrorLast(void); + + +/** Get errorCode of last error put on the error stack + * + * @return psErrorCode last error code, or PS_ERR_NONE + */ +psErrorCode psErrorCodeLast(void); + + +/** Clears the error stack. + * + * The error stack may be completely cleared with psErrorClear. + * + */ +void psErrorClear(void); + + +/** Get the error stack depth + * + * @return int The number of items on the error stack + */ +long psErrorGetStackSize(); + + +/** Prints error stack to specified open file descriptor + * + * The entire error stack may be printed to an open file descriptor by + * calling psErrorStackPrint; if and only if there are current errors, the + * printf-style string format is first printed to the file descriptor fd. In + * this printout, error codes are replaced by their string equivalents. + * + */ +void psErrorStackPrint( + FILE* fd, ///< destination file descriptor + const char* format, ///< printf-style format of header line + ... ///< any parameters required in format +#ifdef __GNUC__ +) __attribute__((format(printf, 2, 3))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ + + +#ifndef SWIG +/** Prints error stack to specified open file descriptor + * + * The entire error stack may be printed to an open file descriptor by + * calling psErrorStackPrintV; if and only if there are current errors, the + * vprintf-style string format is first printed to the file descriptor fd. In + * this printout, error codes are replaced by their string equivalents. + * + */ +void psErrorStackPrintV( + FILE* fd, ///< destination file descriptor + const char* format, ///< printf-style format of header line + va_list va ///< any parameters required in format +); +#endif // ifndef SWIG + + +/** Reports an error message to the logging facility + * + * This function will invoke the psLogMsg function with a level of + * PS_LOG_ERROR and pass the parameters name and format to generate a proper + * log message. + * + * This function modifies the error stack. + * + * @return psErrorCode the given error code + */ +#ifdef DOXYGEN +psErrorCode psError( + psErrorCode code, ///< Error class code + bool new, ///< true if error originates at this location + const char* format, ///< printf-style format of header line + ... ///< any parameters required in format +); +#else // ifdef DOXYGEN +psErrorCode p_psError( + const char* filename, ///< file name + unsigned int lineno, ///< line number in file + const char* func, ///< function name + psErrorCode code, ///< Error class code + bool new, ///< true if error originates at this location + const char* format, ///< printf-style format of header line + ... ///< any parameters required in format +#ifdef __GNUC__ +) __attribute__((format(printf, 6, 7))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psError(code,new,...) \ + p_psError(__FILE__,__LINE__,__func__,code,new,__VA_ARGS__) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Logs a warning message. + * + * This procedure logs a message to the destination set by a prior + * call to psLogSetDestination(), This is equivalent to calling + * psLogMsg with a level of PS_LOG_WARN. + * + */ +#ifdef DOXYGEN +void psWarning( + const char* format, ///< printf-style format of header line + ... ///< any parameters required in format +); +#else // #ifdef DOXYGEN +void p_psWarning( + const char* file, ///< file name + int lineno, ///< line number in file + const char* func, ///< function name + const char* format, ///< printf-style format of header line + ... ///< any parameters required in format +#ifdef __GNUC__ +) __attribute__((format(printf, 4, 5))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psWarning(...) \ + p_psWarning(__FILE__,__LINE__,__func__,__VA_ARGS__) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Create a new psErr struct + * + * Creates a new psErr struct, making a copy of the parameters. + * + * @return psErr* new psErr object + */ +psErr* psErrAlloc( + const char* name, ///< Name of error in the form aaa.bbb.ccc + psErrorCode code, ///< Error class code + const char* msg ///< Error message +); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/sys/psErrorCodes.c.in =================================================================== --- /branches/rel-1-1/psLib/src/sys/psErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psErrorCodes.c.in (revision 12167) @@ -0,0 +1,165 @@ +/** @file psErrorCodes.c + * + * @brief Contains the error codes for the error classes + * + * @ingroup ErrorHandling + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 01:21:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include + +#include "psError.h" +#include "psErrorCodes.h" +#include "psList.h" +#include "psMemory.h" + + + +static psErrorDescription staticErrorCodes[] = { + {PS_ERR_NONE,"not an error"}, + {PS_ERR_BASE,"base error"}, + {PS_ERR_${ErrorCode},"${ErrorDescription}"}, + {PS_ERR_N_ERR_CLASSES,"error classes end marker"} + }; + +static psList* dynamicErrorCodes = NULL; +static const psErrorDescription* getErrorDescription(psErrorCode code); + + +static const psErrorDescription* getErrorDescription(psErrorCode code) +{ + // first, search the static error codes + + psS32 n = 0; + while(staticErrorCodes[n].code != PS_ERR_N_ERR_CLASSES && + staticErrorCodes[n].code != code) { + n++; + } + + if (staticErrorCodes[n].code == code) { + return &staticErrorCodes[n]; + } else { + psErrorDescription* desc; + // make sure there is a list to search + if (dynamicErrorCodes == NULL) { + return NULL; + } + + // search dynamic list of error descriptions before giving up. + psListIterator* iter = psListIteratorAlloc(dynamicErrorCodes,PS_LIST_HEAD,true); + while ((desc = (psErrorDescription*)psListGetAndIncrement(iter)) != NULL) { + if (desc->code == code) { + psFree(iter); + return desc; + } + } + psFree(iter); + } + return NULL; +} + +static void freeErrorDescription(psErrorDescription* err) +{ + psFree((void *)err->description); +} + +psErrorDescription* psErrorDescriptionAlloc(psErrorCode code, + const char *description) +{ + psErrorDescription* err = psAlloc(sizeof(psErrorDescription)); + err->code = code; + if (description == NULL) { + err->description = NULL; + } else { + err->description = psAlloc(sizeof(char)*strlen(description)+1); + strcpy((char*)err->description,description); + } + + psMemSetDeallocator(err,(psFreeFunc)freeErrorDescription); + return err; +} + + +const char *psErrorCodeString(psErrorCode code) +{ + // Check input argument is non-negative + if ( code < 0 ) { + return NULL; + } + + const psErrorDescription* desc = getErrorDescription(code); + + if (desc == NULL) { + return NULL; + } + + return desc->description; +} + +void psErrorRegister(const psErrorDescription* errors, + int errorCode) +{ + if (errorCode < 1) { + return; + } + + if (errors == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psErrorDescription pointer can not be NULL.")); + return; + } + + if (dynamicErrorCodes == NULL) { + dynamicErrorCodes = psListAlloc(NULL); + psMemSetPersistent(dynamicErrorCodes,true); + + psMemSetPersistent(dynamicErrorCodes->iterators,true); + psMemSetPersistent(dynamicErrorCodes->iterators->data,true); + for (int i = 0; i < dynamicErrorCodes->iterators->n;i++) { + psMemSetPersistent(dynamicErrorCodes->iterators->data[i],true); + } + } + + for (psS32 i = 0; i < errorCode; i++) { + psErrorDescription* err = psErrorDescriptionAlloc( + errors[i].code, errors[i].description); + psMemSetPersistent(err,true); + psMemSetPersistent((psPtr)err->description,true); + if (! psListAdd(dynamicErrorCodes, + PS_LIST_HEAD, + err) ) { + + psError(PS_ERR_UNKNOWN, false, + _("Failed to add input psErrorDescription at array index %d."), + i); + } + psMemSetPersistent(dynamicErrorCodes->head,true); + psFree(err); + } +} + +bool p_psErrorUnregister(psErrorCode code) +{ + // Check input argument is non-negative + if ( code < 0 ) { + return false; + } + + const psErrorDescription* desc = getErrorDescription(code); + + if (desc == NULL) { + return false; + } + + if (dynamicErrorCodes == NULL) { + return false; + } + + return psListRemoveData(dynamicErrorCodes,(psPtr)desc); +} Index: /branches/rel-1-1/psLib/src/sys/psErrorCodes.h.in =================================================================== --- /branches/rel-1-1/psLib/src/sys/psErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psErrorCodes.h.in (revision 12167) @@ -0,0 +1,90 @@ +/** @file psErrorCodes.h + * + * @brief Contains the error codes for the error classes + * + * @author RHL, Princeton + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ERROR_CODES_H +#define PS_ERROR_CODES_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include "psType.h" + +/** enumeration of the static error code classes + */ +typedef enum { + PS_ERR_NONE = 0, ///< not an error + PS_ERR_BASE = 256, + /**< base error. Any psErrorCode less than this should be taken to be + * valid values of errno + */ + PS_ERR_${ErrorCode}, + PS_ERR_N_ERR_CLASSES ///< end marker - should not be used as a true error +} psErrorCode; + + +/** An error code with description + */ +typedef struct +{ + psErrorCode code; ///< An error code + const char *description; ///< the associated description +} +psErrorDescription; + + +/** Allocates a new psErrorDescription + * + * @return psErrorDescription* new psErrorDescription struct. + */ +psErrorDescription* psErrorDescriptionAlloc( + psErrorCode code, ///< An error code + const char *description ///< the associated description +); + + +/** Retrieves the description of an error code. + * + * The routine psErrorCodeString returns the string associated with an error + * code. + * + * @return const char* the description associated with the given code. + */ +const char *psErrorCodeString( + psErrorCode code ///< the associated error code +); + + +/** Register an error code + * + * Any project needed to use psLib must define the necessary error codes and + * associated message strings. This function registers an array of error + * codes with the error handling subsystem. + * + */ +void psErrorRegister( + const psErrorDescription* errors, ///< Array of error codes to register + int errorCode ///< number of errors in input array +); + + +/** Clears error codes registered via psErrorRegister. + * + * @return bool TRUE if given errorcode was removed, otherwise FALSE. + */ +bool p_psErrorUnregister( + psErrorCode code ///< the error code to find and remove +); + + +/// @} +#endif // #ifndef PS_ERROR_CODES_H Index: /branches/rel-1-1/psLib/src/sys/psExit.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psExit.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psExit.h (revision 12167) @@ -0,0 +1,21 @@ +#ifndef PS_EXIT_H +#define PS_EXIT_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +/// Exit status codes +/// +/// These provide a bit finer granularity compared to success/fail +typedef enum { + PS_EXIT_SUCCESS = 0, ///< Successful termination; matches EXIT_SUCCESS + PS_EXIT_UNKNOWN_ERROR = 1, ///< Error of unknown nature; matches EXIT_FAILURE + PS_EXIT_SYS_ERROR, ///< Error with a system call + PS_EXIT_CONFIG_ERROR, ///< Error with configuration + PS_EXIT_PROG_ERROR, ///< Error in programming (look also for aborts) + PS_EXIT_DATA_ERROR, ///< Error with data + PS_EXIT_TIMEOUT_ERROR, ///< Error due to timeout +} psExit; + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/sys/psLine.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psLine.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psLine.c (revision 12167) @@ -0,0 +1,75 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psAssert.h" +#include "psConstants.h" +#include "psLine.h" +#include "psString.h" +#include "psMemory.h" + +static void lineFree(psLine *line) +{ + + if (!line) { + return; + } + + psFree (line->line); + return; +} + +// allocate a psLine structrue +psLine *psLineAlloc(long Nline) +{ + psLine *line = psAlloc(sizeof(psLine)); + psMemSetDeallocator(line, (psFreeFunc)lineFree); + line->Nline = 0; + line->NLINE = Nline; + // line->line = psAlloc(Nline); + line->line = psStringAlloc(Nline); + + return line; +} + +bool psLineInit(psLine *line) +{ + if (!line) { + return false; + } + + line->Nline = 0; + return true; +} + +bool psLineAdd(psLine *line, + const char *format, + ...) +{ + if (!line) { + return false; + } + + long nMax = line->NLINE - line->Nline; + + va_list ap; + va_start(ap, format); + long Nchar = vsnprintf(&line->line[line->Nline], nMax, format, ap); + line->Nline += PS_MIN(nMax - 1, Nchar); + va_end(ap); + + if (Nchar >= nMax) { + return false; + } + return true; +} + +bool psMemCheckLine(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)lineFree ); +} + Index: /branches/rel-1-1/psLib/src/sys/psLine.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psLine.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psLine.h (revision 12167) @@ -0,0 +1,84 @@ +/** @file psLine.h + * + * @brief charater-string fixed-length line functions + * + * The psLine functions allow manipulation of fixed-length lines. + * + * @author EAM, IFA + * @author Paul Price, IFA + * @author David Robbins, MHPCC + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_LINE_H +#define PS_LINE_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +/** Structure to carry a dynamic string */ +typedef struct +{ + long NLINE; ///< allocated length + long Nline; ///< current length + psString line; ///< character string data +} +psLine; + + +/** Allocates a line object of length Nline. + * + * @return psLine*: the newly allocated line object. +*/ +psLine *psLineAlloc( + long Nline ///< length of line object to allocate +); + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psLine structure, false otherwise. + */ +bool psMemCheckLine( + psPtr ptr ///< the pointer whose type to check +); + + +/** Initializes or re-initializes a line. + * + * Initializes or re-initializes a line, setting the current length to zero and setting + * the string data values to 0. If the function is passed NULL, false is returned. + * + * @return bool: True if successful, otherwise false. +*/ +bool psLineInit( + psLine *line ///< line to (re-)initialize +); + + +/** Adds the line segment to the string. + * + * Appends a line segment to the string, returning false if the new segment would + * overflow the allocated string length. + * + * @return bool: True if successful, otherwise false. +*/ +bool psLineAdd( + psLine *line, ///< the line segment to append + const char *format, ///< printf-style format of line + ... ///< any parameters required in format +#ifdef __GNUC__ +) __attribute__((format(printf, 2, 3))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ + + +/// @} +#endif /* PS_LINE_H */ Index: /branches/rel-1-1/psLib/src/sys/psLogMsg.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psLogMsg.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psLogMsg.c (revision 12167) @@ -0,0 +1,396 @@ +/** @file psLogMsg.c + * @brief Procedures for logging messages. + * \ingroup LogTrace + * + * This file contains code for setting message log levels, message log + * formats, message log destinations, and for generating the messages + * themselves. + * @ingroup LogTrace + * + * @author Robert Lupton, Princeton University + * @author GLG, MHPCC + * + * @version $Revision: 1.66 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 21:36:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "psLogMsg.h" +#include "psError.h" +#include "psTrace.h" +#include "psList.h" +#include "psString.h" +#include "psMemory.h" + + + +#define MIN_LOG_LEVEL 0 +#define MAX_LOG_LEVEL 9 + +#define MAX_LOG_LINE_LENGTH 256 + +static int logFD = STDERR_FILENO; // Log file descriptor +static psS32 globalLogLevel = PS_LOG_INFO; // log all messages at this or above +static bool logTime = true; // Flag to include time info +static bool logHost = true; // Flag to include host info +static bool logLevel = true; // Flag to include level info +static bool logName = true; // Flag to include name info +static bool logMsg = true; // Flag to include message info + +/***************************************************************************** +psLogSetLevel(): Set the current log level and return old level. +Input: + level (psS32): the new log level. +Output: + The old log level. + *****************************************************************************/ +int psLogSetLevel(int level) +{ + // Save old global log level for changing it. + psS32 oldLevel = globalLogLevel; + + if ((level < MIN_LOG_LEVEL) || (level > MAX_LOG_LEVEL)) { + psLogMsg("logmsg", PS_LOG_WARN, "Attempt to set invalid logMsg level: %d", level); + level = (level < MIN_LOG_LEVEL) ? MIN_LOG_LEVEL : MAX_LOG_LEVEL; + } + // Set new global log level + globalLogLevel = level; + + // Return old global log level + return oldLevel; +} + +int psLogGetLevel() +{ + return globalLogLevel; +} + +/***************************************************************************** +psLogSetDestination(): sets the log message destination. +Input: + dest (psS32): the new log destination +Return: + An bool: TRUE if successful. + *****************************************************************************/ +bool psLogSetDestination(int fd) +{ + if (fd < 0) { + return false; + } + + // Close the current FD if it's not stdout, stderr. + if (logFD > STDERR_FILENO) { + close(logFD); + } + logFD = fd; + + return true; +} + +int psLogGetDestination(void) +{ + return logFD; +} + + +/***************************************************************************** +psLogSetFormat(): Set the format of psLogMsg output. More precisely, + provide a string consisting of the letters {H (host), L (level), M + (message), N (name), T (time)}. The default is "HLMNT". This string + determines whether or not they associated type of information will be + included in message logs. It does not determine the order in which that + information will appear (that order is fixed). + +Input: + fmt: a string specifying the format. +Return: + NULL. + *****************************************************************************/ +bool psLogSetFormat(const char *format) +{ + // assume none. + logHost = false; + logLevel = false; + logMsg = false; + logName = false; + logTime = false; + + // if fmt is NULL, no logging is desired. + if (format == NULL) { + return false; + } + + // XXX: What is the purpose of this conditional. + if (strlen(format) == 0) { + format = "THLNM"; + } + // Step through each character in the format string. For each letter + // in that string, set the appropriate logging. + + for (const char *ptr = format; *ptr != '\0'; ptr++) { + switch (*ptr) { + case 'H': + case 'h': + logHost = true; + break; + case 'L': + case 'l': + logLevel = true; + break; + case 'M': + case 'm': + logMsg = true; + break; + case 'N': + case 'n': + logName = true; + break; + case 'T': + case 't': + logTime = true; + break; + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Unknown logging keyword %c."), *ptr); + return false; + } + } + + // XXX: If one must at least log error messages, why don't we set logMsg = true here? + if (!logMsg) { + psTrace("psLib.sys", 1, "You must at least log error messages (You chose \"%s\")", format); + + } + return true; +} + +int psMessageDestination(const char *dest) +{ + // No destination + if (dest == NULL || strcasecmp(dest, "none") == 0) { + return 0; + } + + // Special destinations: stdout, stderr + if (strcasecmp(dest, "stdout") == 0) { + logFD = STDOUT_FILENO; + return STDOUT_FILENO; + } + if (strcasecmp(dest, "stderr") == 0) { + logFD = STDERR_FILENO; + return STDERR_FILENO; + } + + // Destination is protocol:location + psList *protocolLocation = psStringSplit(dest, ":", false); // A list containing the protocol and location + if (protocolLocation->n != 2) { + psFree(protocolLocation); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Unable to parse protocol:location from: %s\n", dest); + return -1; + } + const char *protocol = psListGet(protocolLocation, PS_LIST_HEAD); // The protocol + const char *location = psListGet(protocolLocation, PS_LIST_TAIL); // The location + + if (strcasecmp(protocol, "file") == 0) { + // FILE *file = fopen(location, "w"); + int fileD = creat(location, 0666); + + if (fileD == 0) { + psError(PS_ERR_IO, true, _("Could not open file '%s' for output."), + location); + psFree(protocolLocation); + return -1; + } + psFree(protocolLocation); + logFD = fileD; + return fileD; + } + + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Unrecognised protocol: %s\n", protocol); + psFree(protocolLocation); + return -1; +} + +#ifndef HOST_NAME_MAX // should be in limits.h +#define HOST_NAME_MAX 256 +#endif // #ifndef HOST_NAME_MAX + +/***************************************************************************** +psLogMsgV(): This routine sends the message, which is a printf style string +specified in the "..." argument, to the current message log destination with +the severity specified by the "level" argument. + Input: + name + level + fmt + ap + *****************************************************************************/ +void psLogMsgV(const char *name, int level, const char *format, va_list ap) +{ + static psS32 first = 1; // Flag for calling gethostname() + static char hostname[HOST_NAME_MAX + 1]; + + // Buffer for hostname. + char clevel = 0; // letter-name for level + char head[MAX_LOG_LINE_LENGTH + 2]; // the added two are for the ending | and \0 + char *head_ptr = head; // where we've got to in head + psS32 maxLength = MAX_LOG_LINE_LENGTH; + time_t clock = time(NULL); // The current time. + struct tm *utc = gmtime(&clock); // The current gm time. + + // If it's an abort, we always want to see the message + if (logFD == 0 && level == PS_LOG_ABORT) { + logFD = STDERR_FILENO; + } + // If logging is off, or if the level is too high, return immediately. + if ((level > globalLogLevel) || (logFD == 0)) { + return; + } + // If I have not been here yet, determine my hostname and save it. + if (first) { + first = 0; + gethostname(hostname, HOST_NAME_MAX); + } + + switch (level) { + case PS_LOG_ABORT: + clevel = 'A'; + break; + + case PS_LOG_ERROR: + clevel = 'E'; + break; + + case PS_LOG_WARN: + clevel = 'W'; + break; + + case PS_LOG_INFO: + clevel = 'I'; + break; + + case 4: + case 5: + case 6: + case 7: + case 8: + case 9: + clevel = level + '0'; + break; + + default: + psTrace("psLib.sys", 2, "Invalid logMsg level: %d (%s)\n", level, format); + level = (level < 0) ? 0 : 9; + clevel = level + '0'; + break; + } + + // Create the various log fields... + if (logTime) { + maxLength -= snprintf(head_ptr, maxLength, "%4d-%02d-%02d %02d:%02d:%02dZ", + utc->tm_year + 1900, utc->tm_mon + 1, utc->tm_mday, + utc->tm_hour, utc->tm_min, utc->tm_sec) - 1; + head_ptr += strlen(head_ptr); + } + // Hostname should be 20 characters. + if (logHost) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%-20s", hostname); + head_ptr += strlen(head_ptr); + } + if (logLevel) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%c", clevel); + head_ptr += strlen(head_ptr); + } + if (logName) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%s", name); + + head_ptr += strlen(head_ptr); + } + + if (head_ptr > head) { + *head_ptr++ = '\n'; + } else if (!logMsg) { // no output desired + return; + } + *head_ptr = '\0'; + + write(logFD, head, strlen(head)); + if (logMsg) { + psString msg = NULL; // Message to print + psStringAppendV(&msg, format, ap); + + // detect multiple lines in message and indent each line by 4 spaces. + char* msgPtr; + char *line = strtok_r(msg, "\n", &msgPtr); + while (line) { + write(logFD, " ", 4); + write(logFD, line, strlen(line)); + write(logFD, "\n", 1); + line = strtok_r(NULL, "\n", &msgPtr); + } + psFree(msg); + } else { + write(logFD, "\n", 1); + } + + if (level == PS_LOG_ABORT) { + switch (logFD) { + case STDOUT_FILENO: + fflush(stdout); + break; + case STDERR_FILENO: + fflush(stderr); + break; + // For the others, write() should send it unbuffered...? + } + + } +} + +/***************************************************************************** +psLogMsg(): This routine sends the message, which is a printf style string +specified in the "..." argument, to the current message log destination with +the severity specified by the "level" argument. + +Input: + name: Indicates the source of this log message. + level: The severity of this log message. + fmt: The printf-stype formatted string, followed by the arguments + to that string. + ... The arguments to the above printf-style string. + +Return: + NULL + *****************************************************************************/ +void psLogMsg(const char *name, int level, const char *format, ...) +{ + va_list ap; + + va_start(ap, format); + psLogMsgV(name, level, format, ap); + va_end(ap); +} Index: /branches/rel-1-1/psLib/src/sys/psLogMsg.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psLogMsg.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psLogMsg.h (revision 12167) @@ -0,0 +1,144 @@ +/** @file psLogMsg.h + * + * @brief Procedures for logging messages. + * + * This file will hold the prototypes for defining procedure which set + * message log levels, messahe log formats, message log destinations, and + * for generating the messages themselves. + * + * @author Robert Lupton, Princeton University + * @author GLG, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.39 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_LOG_MSG_H +#define PS_LOG_MSG_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include +#include "psType.h" + + +///< Status codes for log messages +enum { + PS_LOG_ABORT = 0, ///< log message is a critical error, perform an abort after printing + PS_LOG_ERROR, ///< log message is an error, but don't abort + PS_LOG_WARN, ///< log message is a warning + PS_LOG_INFO, ///< log message is informational only + PS_LOG_DETAIL, ///< log message provides details of minor interest + PS_LOG_MINUTIA, ///< log message provides very detailed information +}; + + +///< Destinations for log messages +enum { + PS_LOG_TO_NONE = 0, ///< turn off logging + PS_LOG_TO_STDERR = 1, ///< log to system's stderr + PS_LOG_TO_STDOUT = 2 ///< log to system's stdout +}; + +/** This procedure sets the destination for future log messages. + * + * This procedure will take an integer as an argument + * which can specify general log destinations. + * + * @return bool true if set successfully, otherwise false. + */ +bool psLogSetDestination( + int fd ///< Specifies where to send messages. +); + + +/** This procedure returns the current log destination file descriptor. If the + * destination has not been defined by the use, the descriptor for stdout is + * returned. + * + * @return int: The current file descriptor. + */ +int psLogGetDestination(); + + +/** This procedure sets the message level for future log messages. Subsequent + * log messages, with a log level of "mylevel", will only be logged if + * "mylevel" is less than the current log level set by this procedure. + * Ie. higher values set by this procedure will cause more log messages to + * be displayed. The old log level will be returned. + * + * @return int: old logging level. + */ +int psLogSetLevel( + int level ///< Specifies the system log level +); + + +/** This procedures returns the current log message level. + * + * @return int: The current logging level. + */ +int psLogGetLevel(); + +/** This procedure sets the log format for future log messages. The argument + * must be a character string consistsing of the letters H (host), L + * (level), M (message), N (name), and T (time). The default is "THLNM". + * Deleting a letter from the string will cause the associated information + * to not be logged. This procedure does not alter the order in which + * the messages are displayed. + * + * @return bool: True if successful, otherwise false. + */ +bool psLogSetFormat( + const char *format ///< Specifies the system log format +); + + +/** This procedures uses a string to set the destination for which to send + * the corresponding log messages. + * + * @return int: The file descriptor location of the message. + */ +int psMessageDestination( + const char *dest ///< Specifies where to send the message +); + + +/** This procedure logs a message to the destination set by a prior + * call to psLogSetDestination(), if myLevel is less than the level + * specified by a prior call to psLogSetLevel(). The message is specified + * with a printf-type string and arguments. + * + */ +void psLogMsg( + const char *name, ///< name of the log source + int level, ///< severity level of this log message + const char *format, ///< printf-style format command + ... +#ifdef __GNUC__ +) __attribute__((format(printf, 3, 4))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ + + +/** This procedure is functionally equivalent to psLogMsg(), except that + * it takes a va_list as the message parameter, not a printf-style string. + * + */ +#ifndef SWIG +void psLogMsgV( + const char *name, ///< name of the log source + int level, ///< severity level of this log message + const char *format, ///< printf-style format command + va_list ap ///< varargs argument list +); +#endif // #ifndef SWIG + + +/// @} +#endif // #ifndef PS_LOG_MSG_H Index: /branches/rel-1-1/psLib/src/sys/psMemory.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psMemory.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psMemory.c (revision 12167) @@ -0,0 +1,999 @@ +/** @file psMemory.c +* +* @brief Contains the definitions for the memory management system +* +* psMemory.h has additional information and documentation of the routines +* found in this file. +* +* @author Robert DeSonia, MHPCC +* @author Robert Lupton, Princeton University +* @author Joshua Hoblitt, University of Hawaii +* +* @version $Revision: 1.94 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-07 01:15:49 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#if HAVE_CONFIG_H +# include "config.h" +#endif + +#define PS_ALLOW_MALLOC // we're allowed to call malloc() + +#include +#include +#include +#include +#include + +#if defined(PS_MEM_BACKTRACE) && defined(HAVE_BACKTRACE) +# include +#endif + +#include "psError.h" // for psErrorStackPrint() only +#include "psMemory.h" + +#define MUTEX_LOCK(mutexPtr) \ +if (safeThreads) { \ + pthread_mutex_lock(mutexPtr); \ +} + +#define MUTEX_UNLOCK(mutexPtr) \ +if (safeThreads) { \ + pthread_mutex_unlock(mutexPtr); \ +} + +// psAbort() calls functions that call psAlloc() so it is *UNSAFE* to use it +// from within the memory subsystem. Previous implementations tried to do +// this and would deadlock while trying to allocate memory. +// +// Note that psError() is also *UNSAFE* to use from within the memory +// subsystem. +#define PS_MEM_ABORT(name, ...) \ +P_PS_MEM_ABORT(__FILE__, __LINE__, __func__, name, __VA_ARGS__) + +// psErrorStackPrint() was specifically modified to be safe to call from inside +// psMemory.c. +#define P_PS_MEM_ABORT(filename, lineno, func, name, ...) \ +fprintf(stderr, "%s (%s:%d) ", func, filename, lineno); \ +fprintf(stderr, __VA_ARGS__);\ +psErrorStackPrint(stderr, "\nAborting. Error stack:\n"); \ +fprintf(stderr, "\n");\ +abort(); + +#define HANDLE_BAD_BLOCK(memBlock, file, lineo, func) \ +if (isBadMemBlock(stderr, memBlock, file, lineo, func)) { \ + PS_MEM_ABORT(__func__, "Unsafe to Continue\n"); \ +} + +static bool isBadMemBlock(FILE *output, const psMemBlock *memBlock, const char *file, unsigned int lineo, const char *func); + +// pointer to the last mem block that was allocated +static psMemBlock *lastMemBlockAllocated = NULL; + +// memBlockListMutex protects access to: +// lastMemBlockAllocated +// safeThreads +// memid +// memory_is_persistent +// "the linked list of mem blocks" +// p_psMemAllocID +// p_psMemFreeID +// memAllocCallback +// memFreeCallback +// memExhaustedCallback +// +// This is a fair ammount of stuff to protect with a single mutex but most of +// these items are *VERY* low contention items. The only item that should be +// performance issue is "the linked list of mem blocks". If this does become a +// problem in production use of the list should be disabled as it is really a +// debugging feature. +// +// XXX make the mem block list a build time option +// +static pthread_mutex_t memBlockListMutex = PTHREAD_MUTEX_INITIALIZER; + +//private boolean for enabling/disabling thread safety. Default = enabled. +static bool safeThreads = true; + +// private boolean for deciding if allocated memory is persistent +static bool memory_is_persistent = false; + +/** + * Unique ID for allocated blocks + */ +static psMemId memid = 0; + +/** + * Default memExhausted callback. + */ +static void *memExhaustedCallbackDefault(size_t size) +{ + return NULL; +} + +/* + * Default callback for both allocate and free. Note that the + * value of p_psMemAllocID/p_psMemFreeID is incremented + * by the return value (so returning 0 means that the callback + * isn't resignalled) + */ +static psMemId memAllocCallbackDefault(const psMemBlock *memBlock) +{ + static psMemId incr = 0; // "p_psMemAllocID += incr" + + return incr; +} + +static psMemId memFreeCallbackDefault(const psMemBlock *memBlock) +{ + static psMemId incr = 0; // "p_psMemFreeID += incr" + + return incr; +} + +/* + * Routines to check the consistency of the allocated and/or free memory arena + * + * N.b. If the block wasn't allocated by psAlloc, it will appear corrupted + */ +static bool isBadMemBlock(FILE *output, const psMemBlock *memBlock, const char *file, unsigned int lineno, const char *func) +{ + // n.b. since this is called by psMemCheckCorruption while the memblock + // list is mutex locked, we shouldn't call such things as + // p_psAlloc/p_psFree here. + + bool bad = false; + bool blockPrinted = false; + + if (memBlock == NULL) { + fprintf(output, _("NULL memory block.\n" + "Caught in %s at (%s:%d.).\n\n"), func, file, lineno); + // return now as we can't do anything else + return true; + } + + #if 0 + // Currently psAlloc()/psRealloc() will blindly create memBlock's with a + // size of 0. This test is in here to check if this is really + // happening/being use as a feature in the wild. + if (memBlock->userMemorySize < 1) { + psMemBlockPrint(output, memBlock); + blockPrinted = true; + fprintf(output, _("\n\tMemory block has a size of less than 1.\n")); + bad = true; + } + #endif + + if (memBlock->refCounter < 1) { + // using an unreferenced block of memory, are you? + psMemBlockPrint(output, memBlock); + blockPrinted = true; + fprintf(output, _("\n\tMemory block was freed but still being used.\n")); + bad = true; + } + + if (memBlock->startblock != P_PS_MEMMAGIC || memBlock->endblock != P_PS_MEMMAGIC) { + if (!blockPrinted) { + psMemBlockPrint(output, memBlock); + blockPrinted = true; + } + fprintf(output, _("\n\tMemory block is corrupted; buffer underflow detected.\n")); + bad = true; + } + + if (*(psU32 *)((char *)(memBlock + 1) + memBlock->userMemorySize) != P_PS_MEMMAGIC) { + if (!blockPrinted) { + psMemBlockPrint(output, memBlock); + blockPrinted = true; + } + fprintf(output, _("\n\tMemory block is corrupted; buffer overflow detected.\n")); + bad = true; + } + + // XXX ->nextBlock, & -> prevousBlock really should not be looked at by + // this function as they may be changed out from underneath us by new + // memory allocation. However, the memBlock itself shouldn't go away (end + // users responsiblity) so all we're really risking is a garbage value. + + if (memBlock == memBlock->nextBlock) { + if (!blockPrinted) { + psMemBlockPrint(output, memBlock); + blockPrinted = true; + } + fprintf(output, _("\n\tMemory block's ->nextBlock pointer refers to itself.\n")); + bad = true; + } + + if (memBlock == memBlock->previousBlock) { + if (!blockPrinted) { + psMemBlockPrint(output, memBlock); + blockPrinted = true; + } + fprintf(output, _("\n\tMemory block's ->previousBlock pointer refers to itself.\n")); + bad = true; + } + + if (bad) { + fprintf(output, _("\tCaught in %s at (%s:%d).\n\n"), func, file, lineno); + } + + return bad; +} + + +/* + * A callback function to check the state of the memory system; may be registered + * with psMem{Alloc,Free}CallbackSet + */ +static psMemId memAllocCallbackCheckCorruption(const psMemBlock *memBlock) +{ + static psMemId incr = 10; // "p_psMemAllocID += incr" + + if (psMemCheckCorruption(stderr, false) > 0) { + fprintf(stderr, "Detected memory corruption\n"); // somewhere to set a breakpoint + } + + return incr; +} + +/* + * The default callbacks + */ +static psMemAllocCallback memAllocCallback = memAllocCallbackDefault; +static psMemFreeCallback memFreeCallback = memFreeCallbackDefault; +static psMemExhaustedCallback memExhaustedCallback = memExhaustedCallbackDefault; + +psMemExhaustedCallback psMemExhaustedCallbackSet(psMemExhaustedCallback func) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemExhaustedCallback old = memExhaustedCallback; + + if (func != NULL) { + memExhaustedCallback = func; + } else { + memExhaustedCallback = memExhaustedCallbackDefault; + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + +/* + * And now the I-want-to-be-informed callbacks + * + * Call the callbacks when these IDs are allocated/freed + */ +psMemId p_psMemAllocID = 0; // notify user this block is allocated +psMemId p_psMemFreeID = 0; // notify user this block is freed + +psMemId psMemAllocCallbackSetID(psMemId id) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemId old = p_psMemAllocID; + + /* + * This is here purely to stop gcc complaining + */ + assert (memAllocCallbackCheckCorruption != NULL); + + p_psMemAllocID = id; + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + +psMemId psMemFreeCallbackSetID(psMemId id) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemId old = p_psMemFreeID; + + p_psMemFreeID = id; + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + +psMemAllocCallback psMemAllocCallbackSet(psMemAllocCallback func) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemFreeCallback old = memAllocCallback; + + if (func != NULL) { + memAllocCallback = func; + } else { + memAllocCallback = memAllocCallbackDefault; + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + +psMemFreeCallback psMemFreeCallbackSet(psMemFreeCallback func) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemFreeCallback old = memFreeCallback; + + if (func != NULL) { + memFreeCallback = func; + } else { + memFreeCallback = memFreeCallbackDefault; + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + +/* + * Return memory ID counter for next block to be allocated + */ +psMemId psMemGetId(void) +{ + return psMemGetLastId() + 1; +} + +psMemId psMemGetLastId(void) +{ + MUTEX_LOCK(&memBlockListMutex); + + psMemId id = memid; + + MUTEX_UNLOCK(&memBlockListMutex); + + return id; +} + +int p_psMemCheckCorruption(const char *file, + unsigned int lineno, + const char *func, + FILE *output, + bool abort_on_error) +{ + // get exclusive access to the memBlock list to avoid it changing on us + // while we use it. + MUTEX_LOCK(&memBlockListMutex); + + psS32 nbad = 0; // number of bad blocks + for (psMemBlock *memBlock = lastMemBlockAllocated; memBlock != NULL; memBlock = memBlock->nextBlock) { + if (isBadMemBlock(output, memBlock, __FILE__, __LINE__, __func__)) { + nbad++; + + if (abort_on_error) { + // release the lock on the memblock list + MUTEX_UNLOCK(&memBlockListMutex); + PS_MEM_ABORT(__func__, "Detected memory corruption"); + return nbad; + } + } + } + + // release the lock on the memblock list + MUTEX_UNLOCK(&memBlockListMutex); + + return nbad; +} + + +/* + * Set whether allocated memory is persistent + */ +bool p_psMemAllocatePersistent(bool is_persistent) +{ + MUTEX_LOCK(&memBlockListMutex); + + const bool old = memory_is_persistent; + memory_is_persistent = is_persistent; + + MUTEX_UNLOCK(&memBlockListMutex); + + return old; +} + + +/* + * Actually allocate memory + */ +void *p_psAlloc(const char *file, + unsigned int lineno, + const char *func, + size_t size) +{ + + psMemBlock *memBlock = malloc(sizeof(psMemBlock) + size + sizeof(void *)); + if (memBlock == NULL) { + MUTEX_LOCK(&memBlockListMutex); + memBlock = memExhaustedCallback(size); + MUTEX_UNLOCK(&memBlockListMutex); + if (memBlock == NULL) { + PS_MEM_ABORT(__func__, "Failed to allocate %zd bytes at %s (%s:%d)", size, func, file, lineno); + } + } + + // posts + *(psU32 *)&memBlock->startblock = P_PS_MEMMAGIC; + *(psU32 *)&memBlock->endblock = P_PS_MEMMAGIC; + *(psU32 *)((char *) (memBlock + 1) + size) = P_PS_MEMMAGIC; + + // size of memory allocated + memBlock->userMemorySize = size; + + // alloc request by: + // thread + *(pthread_t *)&memBlock->tid = pthread_self(); + // file + memBlock->file = file; + // line number + *(unsigned int *)&memBlock->lineno = (unsigned int)lineno; + // function + memBlock->func = func; + + #if defined(PS_MEM_BACKTRACE) && defined(HAVE_BACKTRACE) + #define BACKTRACE_BUFFER_SIZE 32 + // psMemBlock.func is a 'const char *', so basically we're going to abuse + // that and treat it as a void ** to carry around backtrace information. + // psMemBlock is not ifdef'd to make sure that psMemBlock is always the + // same size & layout reguardless of the pslib .so that's being linked + // against + void **bt = malloc(BACKTRACE_BUFFER_SIZE * sizeof(void *)); + if (bt == NULL) { + PS_MEM_ABORT(__func__, "Failed to allocate memmory for backtrace buffer: %zd bytes at %s (%s:%d)", 32 * sizeof(void *), func, file, lineno); + } + *(size_t *)&memBlock->backtraceSize = backtrace(bt, BACKTRACE_BUFFER_SIZE); + *(void ***)&memBlock->backtrace = bt; + #endif // ifdef HAVE_BACKTRACE + + // free function + memBlock->freeFunc = NULL; + + // persistent memory flag + memBlock->persistent = memory_is_persistent; + + // this block will be add as the last mem block in the list + memBlock->previousBlock = NULL; + + // ref count + memBlock->refCounter = 1; // one user so far + + // need exclusive access of the memory block list now... + MUTEX_LOCK(&memBlockListMutex); + + // increment the memory id only after we've grabbed the memBlockListMutex + *(psMemId* )&memBlock->id = ++memid; + + // insert the new block to the front of the memBlock linked-list + memBlock->nextBlock = lastMemBlockAllocated; + if (memBlock->nextBlock != NULL) { + memBlock->nextBlock->previousBlock = memBlock; + } + lastMemBlockAllocated = memBlock; + + // Did the user ask to be informed about this allocation? + if (memBlock->id == p_psMemAllocID) { + // p_psMemAllocID can only be changed while the memBlockList mutex is + // held + p_psMemAllocID += memAllocCallback(memBlock); + } + + MUTEX_UNLOCK(&memBlockListMutex); + + // And return the user the memory that they allocated + return memBlock + 1; // user memory +} + + +void *p_psRealloc(const char *file, + unsigned int lineno, + const char *func, + void *ptr, + size_t size) +{ + if (ptr == NULL) { + return p_psAlloc(file, lineno, func, size); + } + + psMemBlock *memBlock = ((psMemBlock *)ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + if (size == memBlock->userMemorySize) { + // Nothing to do + return ptr; + } + + // Reallocate the memory + + // Is this the last block we allocated? If it is, we need to keep track of + // this fact and update lastMemBlockAllocated *after* the realloc or + // lastMemBlockAllocated will be left with a bogus value + bool isBlockLast = (memBlock == lastMemBlockAllocated); + + memBlock = (psMemBlock *)realloc(memBlock, sizeof(psMemBlock) + size + sizeof(void *)); + if (memBlock== NULL) { + MUTEX_LOCK(&memBlockListMutex); + memBlock = memExhaustedCallback(size); + if (memBlock == NULL) { + MUTEX_UNLOCK(&memBlockListMutex); + psMemBlockPrint(stderr, ((psMemBlock *)ptr) - 1); + fprintf(stderr, "Problem reallocating block\n"); + PS_MEM_ABORT(__func__, "Failed to reallocate to %zd bytes at %s (%s:%d)", size, func, file, lineno); + } + } + + // realloc() successed so need to update lastMemBlockAllocated if we just + // mucked with the last mem block + if (isBlockLast) { + lastMemBlockAllocated = memBlock; + } + + memBlock->userMemorySize = size; + *(psU32 *)((char *)(memBlock + 1) + size) = P_PS_MEMMAGIC; + + MUTEX_LOCK(&memBlockListMutex); + + // Is this the last block we allocated? + if (memBlock== lastMemBlockAllocated) { + lastMemBlockAllocated = memBlock; + } + + // the block location may have changed, so fix the linked list addresses. + if (memBlock->nextBlock != NULL) { + memBlock->nextBlock->previousBlock = memBlock; + } + if (memBlock->previousBlock != NULL) { + memBlock->previousBlock->nextBlock = memBlock; + } + + // Did the user ask to be informed about this allocation? + if (memBlock->id == p_psMemAllocID) { + p_psMemAllocID += memAllocCallback(memBlock); + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return memBlock + 1; // usr memory +} + +/* + * Check for memory leaks. + */ +int p_psMemCheckLeaks(const char *file, + unsigned int lineno, + const char *func, + psMemId id0, + psMemBlock ***array, + FILE * fd, + bool persistence) +{ + psS32 nleak = 0; + psS32 j = 0; + psMemBlock *topBlock = lastMemBlockAllocated; + + // make sure that the memblock list is free of corruption before we crawl + // the list + p_psMemCheckCorruption(file, lineno, func, fd, true); + + MUTEX_LOCK(&memBlockListMutex); + + // if topBlock is NULL there's nothing to do + if (!topBlock) { + MUTEX_UNLOCK(&memBlockListMutex); + return 0; + } + + // find the very first memblock + psMemBlock *memBlock = NULL; + for (memBlock = topBlock; memBlock->nextBlock != NULL; memBlock = memBlock->nextBlock) { } + + // iterate through the block list starting with the oldest block + for (; memBlock != NULL; memBlock = memBlock->previousBlock) { + if ( (memBlock->refCounter > 0) && + ( (persistence) || (!persistence && !memBlock->persistent) ) && + (memBlock->id >= id0)) { + + nleak++; + + if (fd != NULL) { + if (nleak == 1) { + fprintf(fd, "# func at (file:line) ID: X\n"); + } + + fprintf(fd, "%s at (%s:%d) ID: %lu", memBlock->func, memBlock->file, (int)memBlock->lineno, (unsigned long)memBlock->id); + #if defined(PS_MEM_BACKTRACE) && defined(HAVE_BACKTRACE) + + size_t size = memBlock->backtraceSize; + char **strings = backtrace_symbols((void *const *)memBlock->backtrace, size); + + fprintf(fd, " Alloc Call Depth: %zd\n", size); + + for (int i = 0; i < size; i++) { + // always ident + int ident = 4; // initial indent + ident += 2 * i; // nesting depth + fprintf(fd, "%*s", ident, ""); + + // if the caller was an anon function then strchr won't + // find a '(' in the string and will return NULL + char *caller = caller = strchr(strings[i], '('); + if (caller) { + // skip over the '(' + caller++; + // find the end of the symbol name + size_t callerLength = abs(strchr(caller, '+') - caller); + // print just the symbol name + for (int i = 0; i < callerLength; i++) { + fputc(caller[i],fd); + } + fprintf(fd, "\n"); + } else { + fprintf(fd, "(unknown)\n"); + } + } + + free (strings); + #else // ifdef HAVE_BACKTRACE + // \n after "Memory Block ID" + fprintf(fd, "\n"); + #endif // ifdef HAVE_BACKTRACE + + } + } + } + + MUTEX_UNLOCK(&memBlockListMutex); + + if (nleak == 0 || array == NULL) { + return nleak; + } + + *array = psAlloc(nleak * sizeof(psMemBlock)); + + MUTEX_LOCK(&memBlockListMutex); + + for (psMemBlock *memBlock = topBlock; memBlock != NULL; memBlock = memBlock ->nextBlock) { + if ( (memBlock->refCounter > 0) && + ( (persistence) || (!persistence && !memBlock->persistent) ) && + (memBlock->id >= id0)) { + + (*array)[j++] = memBlock; + if (j == nleak) { // found them all + break; + } + } + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return nleak; +} + + +/* + * Reference counting APIs + */ +psReferenceCount p_psMemGetRefCounter(const char *file, + unsigned int lineno, + const char *func, + void *ptr) +{ + if (ptr == NULL) { + return 0; + } + + psMemBlock *memBlock = ((psMemBlock *) ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + return memBlock->refCounter; +} + + +// increment and return refCounter +void *p_psMemIncrRefCounter(const char *file, + unsigned int lineno, + const char *func, + void *ptr) +{ + if (ptr == NULL) { + return ptr; + } + + psMemBlock* memBlock = ((psMemBlock *) ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + memBlock->refCounter++; + + // Did the user ask to be informed about this allocation? + MUTEX_LOCK(&memBlockListMutex); + if (memBlock->id == p_psMemAllocID) { + p_psMemAllocID += memAllocCallback(memBlock); + } + MUTEX_UNLOCK(&memBlockListMutex); + + return ptr; +} + + +#if 0 +void * p_psMemSetRefCounter(void * vptr, + psReferenceCount count, + const char *file, + psS32 lineno) +{ + psMemBlock* ptr; + + if (vptr == NULL) { + return vptr; + } + + if (count < 0) { + count = 0; + } + + ptr = ((psMemBlock* ) vptr) - 1; + + if (isBadMemBlock(ptr, __func__)) { + (void)p_psMemDecrRefCounter(vptr, filename, lineno); + memProblemCallback(ptr, file, lineno); + } + + ptr->refCounter = count; + + if (count < 1) { + vptr = p_psMemDecrRefCounter(vptr,file,lineno); + } + + return vptr; +} +#endif + + +// decrement and return refCounter +void *p_psMemDecrRefCounter(const char *file, + unsigned int lineno, + const char *func, + void * ptr) +{ + if (ptr == NULL) { + return NULL; + } + + psMemBlock *memBlock = ((psMemBlock *) ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + // if we have multiple references, just decrement the count and return. + if (memBlock->refCounter > 1) { + memBlock->refCounter--; + + // Did the user ask to be informed about this deallocation? + MUTEX_LOCK(&memBlockListMutex); + if (memBlock->id == p_psMemFreeID) { + p_psMemFreeID += memFreeCallback(memBlock); + } + MUTEX_UNLOCK(&memBlockListMutex); + + return ptr; + } + + // we can't invoke freeFunc() while we're holding memBlockListMutex as it + // may invoke psFree() itself + if (memBlock->freeFunc != NULL) { + memBlock->freeFunc(ptr); + } + + MUTEX_LOCK(&memBlockListMutex); + + // Did the user ask to be informed about this deallocation? + if (memBlock->id == p_psMemFreeID) { + p_psMemFreeID += memFreeCallback(ptr); + } + + // cut the memBlock out of the memBlock list + if (memBlock->nextBlock != NULL) { + memBlock->nextBlock->previousBlock = memBlock->previousBlock; + } + if (memBlock->previousBlock != NULL) { + memBlock->previousBlock->nextBlock = memBlock->nextBlock; + } + if (lastMemBlockAllocated == memBlock) { + lastMemBlockAllocated = memBlock->nextBlock; + } + + MUTEX_UNLOCK(&memBlockListMutex); + + // invoke free only after we've released the block list lock as free() + // could take awhile. We can get away with this as at this point the + // memBlock is no longer part of the mem block list. + #if defined(PS_MEM_BACKTRACE) && defined(HAVE_BACKTRACE) + + free(memBlock->backtrace); + #endif + + free(memBlock); + + // since we freed it, make sure we return NULL. + return NULL; +} + + +void p_psMemSetDeallocator(const char *file, + unsigned int lineno, + const char *func, + void *ptr, + psFreeFunc freeFunc) +{ + if (ptr == NULL) { + return; + } + + psMemBlock* memBlock = ((psMemBlock *)ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + memBlock->freeFunc = freeFunc; +} + + +psFreeFunc p_psMemGetDeallocator(const char *file, + unsigned int lineno, + const char *func, + void *ptr) +{ + if (ptr == NULL) { + return NULL; + } + + psMemBlock* memBlock = ((psMemBlock *)ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + return memBlock->freeFunc; +} + + +bool psMemSetThreadSafety(bool safe) +{ + MUTEX_LOCK(&memBlockListMutex); + + bool oldState = safeThreads; + safeThreads = safe; + + MUTEX_UNLOCK(&memBlockListMutex); + + return oldState; +} + + +bool psMemGetThreadSafety(void) +{ + MUTEX_LOCK(&memBlockListMutex); + + bool oldState = safeThreads; + + MUTEX_UNLOCK(&memBlockListMutex); + + return oldState; +} + + +bool p_psMemGetPersistent(const char *file, + unsigned int lineno, + const char *func, + void *ptr) +{ + if (ptr == NULL) { + return NULL; + } + + psMemBlock* memBlock = ((psMemBlock *) ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + return memBlock->persistent; +} + + +void p_psMemSetPersistent(const char *file, + unsigned int lineno, + const char *func, + void *ptr, + bool value) +{ + if (ptr == NULL) { + return; + } + + psMemBlock* memBlock = ((psMemBlock *) ptr) - 1; + + HANDLE_BAD_BLOCK(memBlock, file, lineno, func); + + memBlock->persistent = value; +} + + +/******************************************************************************/ +/* + * Return the total amount of memory owned by psLib; if non-NULL also provide a + * breakdown into recyclable, allocated, and allocated-and-persistent + * + * It would be simple enough to fix this code to return an array of structs to + * describe the insides of the allocator rather than the printf used here. + */ +size_t psMemStats(const bool print, // print details as they're found? + size_t *allocated, // memory that's currently allocated (but not persistent) + size_t *persistent) // persistent memory that's currently allocated +{ + const size_t overhead = sizeof(psMemBlock) + sizeof(void *); // overhead on each allocation + + if (print) { + printf("Type %6s %10s %8s\n", "size", "nByte", "nBlock"); + } + + MUTEX_LOCK(&memBlockListMutex); + /* + * All memory that's currently allocated, whether persistent or not + */ + size_t allocated_s, persistent_s; + if (allocated == NULL) { + allocated = &allocated_s; + } + if (persistent == NULL) { + persistent = &persistent_s; + } + + size_t alloc = 0, persist = 0; + size_t nalloc = 0, npersist = 0; + for (psMemBlock* ptr = lastMemBlockAllocated; ptr != NULL; ptr = ptr->nextBlock) { + assert (ptr->refCounter > 0); + + if (ptr->persistent) { + npersist++; + persist += ptr->userMemorySize + overhead; + } else { + nalloc++; + alloc += ptr->userMemorySize + overhead; + } + } + *allocated = alloc; + *persistent = persist; + + if (print) { + printf("Allocated %6s %10zd %8zd\n", "", alloc, nalloc); + printf("Persistent %6s %10zd %8zd\n", "", persist, npersist); + } + + MUTEX_UNLOCK(&memBlockListMutex); + + return *allocated + *persistent; +} + +int psMemBlockPrint(FILE *output, const psMemBlock *memBlock) +{ + return fprintf(output, + "Memory Block ID: %lu @ %p\n" + "\tPrevious Block: %p Next Block: %p\n" + "\tFree function: %p\n" + "\tSize: %zd Reference count: %lu Persistent: %s\n" + "\tPosts: %x %x %x\n" + "\tAllocated in %s at (%s:%d)\n" + "\t\tby Thread ID %lu\n", + memBlock->id, memBlock, + memBlock->previousBlock, memBlock->nextBlock, + memBlock->freeFunc, + memBlock->userMemorySize, memBlock->refCounter, (memBlock->persistent ? "Yes" : "No"), + memBlock->startblock, memBlock->endblock, + *(psU32 *)((char *) (memBlock + 1) + memBlock->userMemorySize), + memBlock->func, memBlock->file, memBlock->lineno, memBlock->tid); +} Index: /branches/rel-1-1/psLib/src/sys/psMemory.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psMemory.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psMemory.h (revision 12167) @@ -0,0 +1,640 @@ +/* @file psMemory.h + * @brief Contains the definitions for the memory management system + * + * @brief Contains the definitions for the memory management system + * + * This is the generic memory management system put inbetween the user's high + * level code and the OS-level memory allocation routines. This system adds + * such features as callback routines for memory error events, tracing + * capabilities, and reference counting. + * + * @author Robert DeSonia, MHPCC + * @author Robert Lupton, Princeton University + * @author Joshua Hoblitt, University of Hawaii + * + * @ingroup MemoryManagement + * + * @version $Revision: 1.68 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_MEMORY_H +#define PS_MEMORY_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include // needed for FILE +#include // mutexes +#include // for uint32_t +#include + +/** @addtogroup MemoryManagement + * @{ + */ + +#define P_PS_MEMMAGIC (uint32_t)0xdeadbeef // Magic number in psMemBlock header + +/// typedef for memory identification numbers. Guaranteed to be some variety of integer. +typedef unsigned long psMemId; + +/// typedef for a memory block's reference count. Guaranteed to be some variety of integer. +typedef unsigned long psReferenceCount; + +/// typedef for deallocator. +typedef void (*psFreeFunc) (void *ptr); + +/** Book-keeping data for storage allocator. + * N.b. sizeof(psMemBlock) must be chosen such that if ptr is a pointer + * returned by malloc, then ((char *)ptr + sizeof(psMemBlock)) is properly + * aligned for all storage types. + */ + +// The memory overhead of a psMemBlock + the trailing post can be checked in +// gdb with the following command: +// p sizeof(psMemBlock) + sizeof(void*) +typedef struct psMemBlock +{ + const uint32_t startblock; ///< initialised to p_psMEMMAGIC + struct psMemBlock *previousBlock; ///< previous block in allocation list + struct psMemBlock *nextBlock; ///< next block allocation list + psFreeFunc freeFunc; ///< deallocator. If NULL, use generic deallocation. + size_t userMemorySize; ///< the size of the user-portion of the memory block + const psMemId id; ///< a unique ID for this allocation + const pthread_t tid; ///< set from pthread_self(); + const char *file; ///< set from __FILE__ in e.g. p_psAlloc + const unsigned int lineno; ///< set from __LINE__ in e.g. p_psAlloc + const char *func; ///< set from __func__ + + #ifdef HAVE_BACKTRACE + + const void **backtrace; ///< set from backtrace() + const size_t backtraceSize; ///< set from bracktrace() + #endif // ifdef HAVE_BACKTRACE + + psReferenceCount refCounter; ///< how many times pointer is referenced + bool persistent; ///< marks if this non-user persistent data like error stack, etc. + const uint32_t endblock; ///< initialised to p_psMEMMAGIC +} +psMemBlock; + +/** prototype of a basic callback used by memory functions + * + * @see psMemAllocCallbackSet + */ +typedef psMemId(*psMemAllocCallback) ( + const psMemBlock *ptr ///< the psMemBlock just allocated +); + +/** prototype of memory free callback used by memory functions + * + * @see psMemFreeCallbackSet + */ +typedef psMemId(*psMemFreeCallback) ( + const psMemBlock *ptr ///< the psMemBlock being freed +); + +/** prototype of a callback used in error conditions + * + * This callback should not try to call psAlloc or psFree. + * + * @see psMemProblemCallbackSet + */ +typedef void (*psMemProblemCallback) ( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psMemBlock *ptr ///< the pointer to the problematic memory block. +); + +/** prototype of a callback function used when memory runs out + * + * @return void * pointer to requested buffer of the size size_t, or NULL if + * memory could not be found. + * + * @see psMemExhaustedCallbackSet + */ +typedef void *(*psMemExhaustedCallback) ( + size_t size ///< the size of buffer required +); + +/** Memory allocation. This operates much like malloc(), but is guaranteed to + * return a non-NULL value. + * + * @return void * pointer to the allocated buffer. This will not be NULL. + * @see psFree + */ +#ifdef DOXYGEN +void *psAlloc( + size_t size ///< Size required +); +#else // ifdef DOXYGEN +void *p_psAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + size_t size ///< Size required +#ifdef __GNUC__ +) __attribute__((malloc)); +# else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psAlloc(size) \ +p_psAlloc(__FILE__, __LINE__, __func__, size) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Set the deallocator routine + * + * A deallocator routine can optionally be assigned to a memory block to + * ensure that associated memory blocks also get freed, e.g., memory buffers + * referenced within a struct. + * + */ +#ifdef DOXYGEN +void psMemSetDeallocator( + void *ptr, ///< the memory block to operate on + psFreeFunc freeFunc ///< the function to be executed at deallocation +); +#else // ifdef DOXYGEN +void p_psMemSetDeallocator( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + void *ptr, ///< the memory block to operate on + psFreeFunc freeFunc ///< the function to be executed at deallocation +); +#ifndef SWIG +#define psMemSetDeallocator(ptr, freeFunc) \ + p_psMemSetDeallocator(__FILE__, __LINE__, __func__, ptr, freeFunc) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Get the deallocator routine + * + * This function returns the deallocator for a memory block. A deallocator + * routine can optionally be assigned to a memory block to ensure that + * associated memory blocks also get freed, e.g., memory buffers referenced + * within a struct. + * + * @return psFreeFunc the routine to be called at deallocation. + */ +#ifdef DOXYGEN +psFreeFunc psMemGetDeallocator( + void *ptr ///< the memory block +); +#else // ifdef DOXYGEN +psFreeFunc p_psMemGetDeallocator( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + void *ptr ///< the memory block +); +#ifndef SWIG +#define psMemGetDeallocator(ptr) \ + p_psMemGetDeallocator(__FILE__, __LINE__, __func__, ptr) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Activate or Deactivate thread safety and mutex locking in the memory + * management. + * + * psMemThreadSafety shall turn on thread safety in the memory management + * functions if safe is true, and deactivate all mutex locking in the memory + * management functions if safe is false. The function shall return the + * previous value of the thread safety. Note that the default behaviour of + * the library shall be for the locking to be performed. + * + * @return bool: The previous value of the thread safety. + */ +bool psMemSetThreadSafety( + bool safe ///< boolean for turning on/off thread safety +); + + +/** Get the current state of thread safety and mutex locking in the memory + * management. + * + * psMemGetThreadSafety shall return the current state of thread safety in the + * memory management system. + * + * @return bool: The current state of thread safety. + */ +bool psMemGetThreadSafety(void); + + +/** Set the memory as persistent so that it is ignored when detecting memory + * leaks. + * + * Used to mark a memory block as persistent data within the library, + * i.e., non user-level data used to hold psLib's state or cache data. Such + * examples of this class of memory is psTrace's trace-levels and dynamic + * error codes. + * + * Memory marked as persistent is excluded from memory leak checks. + * + */ +#ifdef DOXYGEN +void psMemSetPersistent( + void *ptr, ///< the memory block to operate on + bool value, ///< true if memory is persistent, otherwise false +); +#else // ifdef DOXYGEN +void p_psMemSetPersistent( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + void *ptr, ///< the memory block to operate on + bool value ///< true if memory is persistent, otherwise false +); +#ifndef SWIG +#define psMemSetPersistent(ptr, value) \ + p_psMemSetPersistent(__FILE__, __LINE__, __func__, ptr, value) +#endif // idndef SWIG +#endif // ifdef DOXYGEN + + +/** Set whether allocated memory is persistent + * + * Set whether allocated memory is persistent. The defeault is false. + * + * @return bool: The previous value of whether all allocated memory is + * persistent + */ +bool p_psMemAllocatePersistent(bool is_persistent); ///< Should all memory allocated be persistent? + + +/** Get the memory's persistent flag. + * + * Checks if a memory block has been marked as persistent by + * p_psMemSetPresistent. + * + * Memory marked as persistent is excluded from memory leak checks. + * + * @return bool true if memory is marked persistent, otherwise false. + */ +#ifdef DOXYGEN +bool psMemGetPersistent( + void *ptr, ///< the memory block to check. +); +#else // ifdef DOXYGEN +bool p_psMemGetPersistent( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + void *ptr ///< the memory block to check. +); +#ifndef SWIG +#define psMemGetPersistent(ptr) \ + p_psMemGetPersistent(__FILE__, __LINE__, __func__, ptr) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Memory re-allocation. This operates much like realloc(), but is guaranteed + * to return a non-NULL value. + * + * @return void * pointer to resized buffer. This will not be NULL. + * @see psAlloc, psFree + */ +#ifdef DOXYGEN +void *psRealloc( + void *ptr, ///< Pointer to re-allocate + size_t size ///< Size required +); +#else // ifdef DOXYGEN +void *p_psRealloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + void *ptr, ///< Pointer to re-allocate + size_t size ///< Size required +#ifdef __GNUC__ +) __attribute__((malloc)); +# else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psRealloc(ptr, size) \ + p_psRealloc(__FILE__, __LINE__, __func__, ptr, size) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Free memory. This operates much like free(). + * + * @see psAlloc, psRealloc + */ +#ifdef DOXYGEN +void psFree( + void *ptr ///< Pointer to free, if NULL, function returns immediately. +); +#else // ifdef DOXYGEN +#ifndef SWIG +#define psFree(ptr) \ + psMemDecrRefCounter(ptr) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Check for memory leaks. This scans for allocated memory buffers not freed + * with an ID not less than id0. This is used to check for memory leaks by: -# + * before a block of code to be checked, store the current ID count via + * psGetMemId -# after the block of code to be checked, call this function + * using the ID stored above. If all memory in the block that was allocated + * has been freed, this call should output nothing and return 0. + * + * If memory leaks are found, the Memory Problem callback will be called as + * well. + * + * @return int number of memory blocks found as 'leaks', i.e., the number of + * currently allocated memory blocks above id0 that have not been freed. @see + * psAlloc, psFree, psgetMemId, psMemProblemCallbackSet + */ +#ifdef DOXYGEN +int psMemCheckLeaks( + psMemId id0, ///< don't list blocks with id < id0 + psMemBlock ***array, ///< pointer to array of pointers to leaked blocks, or NULL + FILE * fd, ///< print list of leaks to fd (or NULL) + bool persistence ///< make check across all object even persistent ones +); +#else // ifdef DOXYGEN +int p_psMemCheckLeaks( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psMemId id0, ///< don't list blocks with id < id0 + psMemBlock ***array, ///< pointer to array of pointers to leaked blocks, or NULL + FILE * fd, ///< print list of leaks to fd (or NULL) + bool persistence ///< make check across all object even persistent ones +); +#ifndef SWIG +#define psMemCheckLeaks(id0, array, fd, persistence) \ + p_psMemCheckLeaks(__FILE__, __LINE__, __func__, id0, array, fd, persistence) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Check for memory corruption. Scans all currently allocated memory buffers + * and checks for corruptions, i.e., invalid markers that signify a buffer + * under/overflow. + * + * @return int + * + */ +#ifdef DOXYGEN +int psMemCheckCorruption( + FILE *output, ///< FILE to write corrupted blocks too + bool abort_on_error ///< Abort on detecting corruption? +); +#else // ifdef DOXYGEN +int p_psMemCheckCorruption( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + FILE *output, ///< FILE to write corrupted blocks too + bool abort_on_error ///< Abort on detecting corruption? +); +#ifndef SWIG +#define psMemCheckCorruption(output, abort_on_error) \ + p_psMemCheckCorruption(__FILE__, __LINE__, __func__, output, abort_on_error) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Return reference counter + * + * @return psReferenceCount + * + */ +#ifdef DOXYGEN +psReferenceCount psMemGetRefCounter( + void *ptr ///< Pointer to get refCounter for +); + +#else // ifdef DOXYGEN +psReferenceCount p_psMemGetRefCounter( + const char *file, ///< File of call + unsigned int lineno, ///< Line number of call + const char *func, ///< Function name of caller + void *ptr ///< Pointer to get refCounter for +); +#ifndef SWIG +#define psMemGetRefCounter(ptr) \ + p_psMemGetRefCounter(__FILE__, __LINE__, __func__, ptr) +#endif // !SWIG +#endif // !DOXYGEN + + +/** Increment reference counter and return the pointer + * + * @return void * + * + */ +#ifdef DOXYGEN +void *psMemIncrRefCounter( + void *ptr ///< Pointer to increment refCounter, and return +); +#else // ifdef DOXYGEN +void *p_psMemIncrRefCounter( + const char *file, ///< File of call + unsigned int lineno, ///< Line number of call + const char *func, ///< Function name of caller + void *ptr ///< Pointer to increment refCounter, and return +); +#ifndef SWIG +#define psMemIncrRefCounter(ptr) \ + p_psMemIncrRefCounter(__FILE__, __LINE__, __func__, ptr) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Decrement reference counter and return the pointer + * + * + * @return void * the pointer deremented in refCount, or NULL if pointer is + * fully dereferenced. + */ +#ifdef DOXYGEN +void *psMemDecrRefCounter( + void *ptr ///< Pointer to decrement refCounter, and return +); +#else // DOXYGEN +void *p_psMemDecrRefCounter( + const char *file, ///< File of call + unsigned int lineno, ///< Line number of call + const char *func, ///< Function name of caller + void *ptr ///< Pointer to decrement refCounter, and return +); +#ifndef SWIG +#define psMemDecrRefCounter(ptr) \ + p_psMemDecrRefCounter(__FILE__, __LINE__, __func__, ptr) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +#if 0 // psMemSetRefCounter +/** Set reference counter and return the pointer + * + * @return void * the pointer with refCount set, or NULL if pointer is + * fully dereferenced. + */ +#ifdef DOXYGEN +void * psMemSetRefCounter( + void * ptr, ///< Pointer to decrement refCounter, and return + psReferenceCount count ///< New reference count +); +#else // DOXYGEN +void * p_psMemSetRefCounter( + void * vptr, ///< Pointer to decrement refCounter, and return + psReferenceCount count, ///< New reference count + const char *file, ///< File of call + psS32 lineno ///< Line number of call +); + +#ifndef SWIG +#define psMemSetRefCounter(vptr, count) p_psMemSetRefCounter(vptr, count, __FILE__, __LINE__) +#endif // !SWIG + +#endif // !DOXYGEN +#endif // psMemSetRefCounter + +/** Set callback for out-of-memory. + * + * If not enough memory is available to satisfy a request by psAlloc or + * psRealloc, these functions attempt to find an alternative solution by + * calling the psMemExhaustedCallback, a function which may be set by the + * programmer in appropriate circumstances, rather than immediately fail. + * The typical use of such a feature may be when a program needs a large + * chunk of memory to do an operation, but the exact size is not critical. + * This feature gives the programmer the opportunity to make a smaller + * request and try again, limiting the size of the operating buffer. + * + * @return psMemExhaustedCallback old psMemExhaustedCallback function + */ +psMemExhaustedCallback psMemExhaustedCallbackSet( + psMemExhaustedCallback func ///< Function to run at memory exhaustion +); + + +/** Set call back for when a particular memory block is allocated + * + * A private variable, p_psMemAllocID, can be used to trace the allocation + * and freeing of specific memory blocks. If p_psMemAllocID is set and a + * memory block with that ID is allocated, psMemAllocCallback is called + * just before memory is returned to the calling function. + * + * @return psMemAllocCallback old psMemAllocCallback function + */ +psMemAllocCallback psMemAllocCallbackSet( + psMemAllocCallback func ///< Function to run at memory allocation of specific mem block +); + + +/** Set call back for when a particular memory block is freed + * + * A private variable, p_psMemFreeID, can be used to trace the freeing of + * specific memory blocks. If p_psMemFreeID is set and the memory block with + * the ID is about to be freed, the psMemFreeCallback callback is called just + * before the memory block is freed. + * + * @return psMemFreeCallback old psMemFreeCallback function + */ +psMemFreeCallback psMemFreeCallbackSet( + psMemFreeCallback func ///< Function to run at memory free of specific mem block +); + + +/** get next memory ID + * + * @return psMemId the next memory ID to be used + */ +psMemId psMemGetId(void); + + +/** get the last memory ID used + * + * @return psMemId the last memory ID used + */ +psMemId psMemGetLastId(void); + + +/** set p_psMemAllocID to specific id + * + * A private variable, p_psMemAllocID, can be used to trace the allocation + * and freeing of specific memory blocks. If p_psMemAllocID is set and a + * memory block with that ID is allocated, psMemAllocCallback is called + * just before memory is returned to the calling function. + * + * @return psMemId + * + * @see psMemAllocCallbackSet + */ +psMemId psMemAllocCallbackSetID( + psMemId id ///< ID to set +); + + +/** set p_psMemFreeID to id + * + * A private variable, p_psMemFreeID, can be used to trace the freeing of + * specific memory blocks. If p_psMemFreeID is set and the memory block with + * the ID is about to be freed, the psMemFreeCallback callback is called just + * before the memory block is freed. + * + * @return psMemId the old p_psMemFreeID + * + * @see psMemFreeCallbackSet + */ +psMemId psMemFreeCallbackSetID( + psMemId id ///< ID to set +); + + +/** return statistics on memory usage + * + * @return the total amount of memory owned by psLib; if non-NULL also provide + * a breakdown into allocated and allocated-and-persistent + */ +size_t psMemStats(const bool print, ///< print details as they're found? + size_t *allocated, ///< memory that's currently allocated (but not persistent) + size_t *persistent); ///< persistent memory that's currently allocated + +/** print detailed information about a psMemBlock + * + * This function prints a detailed description of a psMemBlock to output. + * + * @return the return status of fprintf() + */ +int psMemBlockPrint( + FILE *output, ///< FILE to write information too + const psMemBlock *memBlock ///< psMemBlock to be examined +); + + +/// @} end of SysUtils + +#ifndef DOXYGEN + +/* + * Ensure that any program using malloc/realloc/free will fail to compile + */ +#ifndef PS_ALLOW_MALLOC +#ifdef __GNUC__ +#pragma GCC poison malloc realloc calloc free +#else // ifdef __GNUC__ +#define malloc(S) _Pragma("error Use of malloc is not allowed. Use psAlloc instead.") +#define realloc(P,S) _Pragma("error Use of realloc is not allowed. Use psRealloc instead.") +#define calloc(S) _Pragma("error Use of calloc is not allowed. Use psAlloc instead.") +#define free(P) _Pragma("error Use of free is not allowed. Use psFree instead.") +#endif // ifdef __GNUC__ +#endif // ifndef PS_ALLOW_MALLOC + +#endif // #ifndef DOXYGEN +#endif // #ifndef PS_MEMORY_H Index: /branches/rel-1-1/psLib/src/sys/psSlurp.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psSlurp.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psSlurp.c (revision 12167) @@ -0,0 +1,88 @@ +/** @file psSlurp.c + * + * @brief Contains functions for slurping files + * + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 03:31:56 $ + * + * Copyright 2006 University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#include +#include +#include +#include +#include + +#include "psType.h" +#include "psAssert.h" +#include "psError.h" +#include "psSlurp.h" +#include "psMemory.h" + +#define SLURP_SIZE 4096 + +psString psSlurpFD(int fd) +{ + psString str = NULL; // String to which to write + size_t size = 1; // bytes allocated - make sure there is room for '\0' + size_t used = 0; // bytes actually used + ssize_t bytes; // Number of bytes read + do { + // increase the allocated string size + size += SLURP_SIZE; + str = psRealloc(str, size); + + // read a block from the stream + bytes = read(fd, str + used, SLURP_SIZE); + if (bytes < 0) { + // it's an error + psError(PS_ERR_IO, true, "slurp failed on read"); + psFree(str); + return NULL; + } + + // Increase the size of the known string + used += bytes; + + } while (bytes != 0); + + // append '\0' to the end of the string + str[used] = '\0'; + + return str; +} + + +psString psSlurpFile(FILE *stream) +{ + return psSlurpFD(fileno(stream)); +} + + +psString psSlurpFilename(const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(filename, NULL); + + int fd = open(filename, O_RDONLY); + if (fd < 0) { + psError(PS_ERR_IO, true, "Failed to open specified file, %s\n", filename); + return NULL; + } + + psString text = psSlurpFD(fd); + + if (close(fd) != 0) { + psError(PS_ERR_IO, true, "Failed to close specified file, %s\n", filename); + psFree(text); + return NULL; + } + + return text; +} Index: /branches/rel-1-1/psLib/src/sys/psSlurp.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psSlurp.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psSlurp.h (revision 12167) @@ -0,0 +1,32 @@ +/* @file psSlurp.h + * @brief read complete files into strings + * + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 03:31:56 $ + */ + +#ifndef PS_SLURP_H +#define PS_SLURP_H + +/// @addtogroup FileIO Input/Output +/// @{ + +// Read ("slurp") a file (specified by file descriptor) +// and return a string containing the entire file. +psString psSlurpFD(int fd // File descriptor to read + ); + +// Read ("slurp") a file (specified by file stream) +// and return a string containing the entire file. +psString psSlurpFile(FILE *stream // File stream to read + ); + +// Read ("slurp") a file (specified by filename) +// and return a string containing the entire file. +psString psSlurpFilename(const char *filename // Filename + ); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/sys/psString.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psString.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psString.c (revision 12167) @@ -0,0 +1,454 @@ + +/** @file psString.c + * + * -*- mode: C; c-basic-indent: 4; tab-width: 8; indent-tabs-mode: nil -*- + * vim: set cindent ts=8 sw=4 expandtab: + * + * @brief Contains the definition of string utility functions + * + * String utility functions defined shall provide basic string copying + * capabilities while using the preferred memory management utilities. + * + * @author Eric Van Alst, MHPCC + * @author David Robbins, MHPCC + * + * @version $Revision: 1.52 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 22:27:30 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psString.h" +#include "psError.h" +#include "psAssert.h" +#include "psAbort.h" +#include "psMemory.h" + +static void stringFree(psString string) +{ + // this function is only nessicary so psMemCheckString has a function + // pointer address to test against +} + + +psString p_psStringAlloc(const char *file, + unsigned int lineno, + const char *func, + long nChar) +{ + if (nChar < 1) { + return NULL; + } + + psString string = p_psAlloc(file, lineno, func, nChar + 1); + psMemSetDeallocator(string, (psFreeFunc)stringFree); + + return string; +} + + +bool psMemCheckString(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return (psMemGetDeallocator(ptr) == (psFreeFunc)stringFree); +} + + +psString p_psStringCopy(const char *file, + unsigned int lineno, + const char *func, + const char *string) +{ + // Pass through NULL values! + if (!string) { + return NULL; + } + + // Output string + psString output = p_psStringAlloc(file, lineno, func, strlen(string) + 1); + + // Copy input string to memory just allocated + return strcpy(output, string); +} + + +psString p_psStringNCopy(const char *file, + unsigned int lineno, + const char *func, + const char *string, + unsigned int nChar) +{ + PS_ASSERT_PTR_NON_NULL(string, NULL); + + // Pass through NULL values + if (!string) { + return NULL; + } + + // Check the number of characters to copy is non-negative + if (nChar == UINT_MAX) { + // Log error message and return NULL + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Can not copy a negative number of characters (%d)."), + nChar); + return NULL; + } + + // Copy input string to memory allocated up to nChar characters + psString output = p_psStringAlloc(file, lineno, func, (size_t) nChar + 1); + output = strncpy(output, string, (size_t) nChar); + + // Ensure the last byte is NULL character + output[nChar] = '\0'; + + // Return the string pointer + return output; +} + + +ssize_t p_psStringAppend(const char *file, + unsigned int lineno, + const char *func, + char **dest, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(dest, 0); + PS_ASSERT_PTR_NON_NULL(format, 0); + + va_list ap; + va_start(ap, format); + ssize_t length = p_psStringAppendV(file, lineno, func, dest, format, ap); + va_end(ap); + + return length; +} + +ssize_t p_psStringAppendV(const char *file, + unsigned int lineno, + const char *func, + char **dest, + const char *format, + va_list ap) +{ + PS_ASSERT_PTR_NON_NULL(dest, 0); + PS_ASSERT_PTR_NON_NULL(format, 0); + + size_t length = 0; // complete string length (sans \0) + size_t oldLength = 0; // original string length (sans \0) + ssize_t tailLength = 0; // length of string to append + + if (*dest) { + oldLength = strlen(*dest); + } else { + oldLength = 0; + } + + va_list apCopy; + + // find the size of the string to append + // C99 guarentees vsnprintf() to work as expected with size = 0 + va_copy(apCopy, ap); + tailLength = vsnprintf(*dest, 0, format, apCopy); + va_end(apCopy); + + // if the new tail is zero length, return the length of the old string. if + // it's a format error, return the error code. + if (tailLength < 1) { + return tailLength == 0 ? oldLength : tailLength; + } + + // realloc string to string + tail + \0 + if (*dest) { + *dest = p_psRealloc(file, lineno, func, *dest, oldLength + tailLength + 1); + } else { + *dest = p_psStringAlloc(file, lineno, func, oldLength + tailLength + 1); + } + + // append tail + \0 + // XXX this second call to va_copy() isn't strictly nessicary as the + // calling function can't assume we won't modify the va_list. However, we + // have decided to error on the side of caution. + va_copy(apCopy, ap); + vsnprintf(*dest + oldLength, tailLength + 1, format, apCopy); + va_end(apCopy); + + return length; +} + + +ssize_t p_psStringPrepend(const char *file, + unsigned int lineno, + const char *func, + char **dest, + const char *format, + ...) +{ + PS_ASSERT_PTR_NON_NULL(dest, 0); + PS_ASSERT_PTR_NON_NULL(format, 0); + + va_list ap; + va_start(ap, format); + ssize_t length = p_psStringPrependV(file, lineno, func, dest, format, ap); + va_end(ap); + + return length; +} + + +ssize_t p_psStringPrependV(const char *file, + unsigned int lineno, + const char *func, + char **dest, + const char *format, + va_list ap) +{ + PS_ASSERT_PTR_NON_NULL(dest, 0); + PS_ASSERT_PTR_NON_NULL(format, 0); + + size_t length; // complete string length (sans \0) + ssize_t headLength; // length of string to prepend + char *oldDest; // copy of original string + + if (!*dest) { + // makes the string backup and concatination pointless + *dest = p_psStringCopy(file, lineno, func, ""); + length = 0; + } else { + // size of existing string + length = strlen(*dest); + } + + va_list apCopy; + + // find the size of the string to prepend + // C99 guarentees vsnprintf() to work as expected with size = 0 + va_copy(apCopy, ap); + headLength = vsnprintf(*dest, 0, format, apCopy); + va_end(apCopy); + + // if the new head is zero length, return the length of the old string. if + // it's a format error, return the error code. + if (headLength < 1) { + return headLength == 0 ? length : headLength; + } + + // backup original string + oldDest = p_psStringCopy(file, lineno, func, *dest); + + // new string length (sans \0) + length += headLength; + + // realloc string to head + string + \0 + *dest = p_psRealloc(file, lineno, func, *dest, length + 1); + + // copy the new head to the beginning of string + // XXX this second call to va_copy() isn't strictly nessicary as the + // calling function can't assume we won't modify the va_list. However, we + // have decided to error on the side of caution. + va_copy(apCopy, ap); + vsnprintf(*dest, length + 1, format, apCopy); + va_end(apCopy); + + // append the original string + strncat(*dest, oldDest, length + 1); + + psFree(oldDest); + + return length; +} + + +// split the string by the given splitters +// NULL input string returns empty (not NULL) list +// NULL splitters is an error +psList *psStringSplit(const char *string, + const char *splitters, + bool multipleAreSignificant) +{ + PS_ASSERT_PTR_NON_NULL(splitters, NULL); + + psList *values = psListAlloc(NULL); // The list of values to return + // An input NULL string should not generate an error: it is a valid case + if (string == NULL) { + return values; + } + + char *next = NULL; + char *current = (char *) string; + while ((next = strpbrk (current, splitters)) != NULL) { + + // are multiple splitters in-a-row significant? + if ((next == current) && !multipleAreSignificant) { + current ++; + continue; + } + + // Copy the current word + psString word = psStringNCopy(current, next - current); + psListAdd(values, PS_LIST_TAIL, word); + psFree(word); + + current = next + 1; + } + + if (strlen(current) > 0) { + // Copy the last word + psString word = psStringCopy(current); + (void)psListAdd(values, PS_LIST_TAIL, word); + psFree(word); + } + + return values; +} + + +// given the input string, search for all copies of the key, and replace with the replacement value +// the input string may be freed if not needed +ssize_t psStringSubstitute(psString *input, + const char *replace, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(input, 0); + + // Empty input gives empty output + if (!*input || strlen(*input) == 0) { + return 0; + } + // No key gives the same as the input + if (!key || strlen(key) == 0) { + return strlen(*input); + } + if (!psMemCheckString(*input)) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "This function requires a psString as input.\n"); + return 0; + } + + + // replace == NULL is valid: it just means that we strip out the key + // without putting anything else in its place + size_t replaceLength; // Size of "replace" string + if (replace) { + replaceLength = strlen(replace); + } else { + replaceLength = 0; + } + + char *search = *input; // Search this string + while (true) { + char *found = strstr(search, key); // Found occurence of the key + if (!found) { + return strlen(*input); + } + + // we have input = xxxkeyxxx + // we want output = xxxreplacexxx + + // this is safe since we will subtract strlen(key) elements from input + psString output = psStringAlloc(strlen(*input) + replaceLength + 1); // Output string + int numChar = found - *input; // Number of characters to copy + + // copy the first segement into 'output' + strncpy(output, *input, numChar); + + // copy the key replacement to the start of the key + if (replace && replaceLength > 0) { + strcpy(output + numChar, replace); + numChar += replaceLength; + } + + // copy the remainder to the end of the replacement + strcpy(output + numChar, found + strlen(key)); + + psFree(*input); + *input = output; + search = output + numChar; + } + + psAbort("Should never get here.\n"); + return 0; +} + + +psArray *psStringSplitArray(const char *string, const char *splitters, bool multi) +{ + + psList *list = psStringSplit(string, splitters, multi); + psArray *array = psListToArray(list); + psFree (list); + return array; +} + + +#ifndef whitespace +#define whitespace(c) (((c) == ' ') || ((c) == '\t')) +#endif + +/* Strip whitespace from the start and end of STRING. */ +size_t psStringStrip(char *string) +{ + long i; + + if (!string || strlen(string) == 0) { + return 0; + } + + for (i = 0; i < strlen(string) && whitespace(string[i]); i++) + ; // No action + if (i) { + memmove (string, string + i, strlen(string+i)+1); + } + for (i = strlen (string) - 1; (i > 0) && whitespace(string[i]); i--) + ; // No action + string[++i] = 0; + + return i; +} + + +/* + * Used by PS_FILE_LINE + */ +const char *p_psFileLine(const char *file, int line) +{ + static char msg[100]; + sprintf(msg, "%s:%d", file, line); + return msg; +} + + +psString psStringStripCVS(const char *string, const char *tagName) +{ + PS_ASSERT_STRING_NON_EMPTY(string, NULL); + PS_ASSERT_STRING_NON_EMPTY(tagName, NULL); + + psString tagString = NULL; // Tag string, e.g., "$Name:" from "Name" + psStringAppend(&tagString, "$%s:", tagName); + char *p = strstr(string, tagString); // The start of the real tag + psFree(tagString); + if (!p) { + return psStringCopy("UNKNOWN"); + } + + psString tag = psStringCopy(string + 6); // The tag, without the leading tagString + p = strrchr(tag, '$'); // The closing dollar sign + if (p) { + *p = 0; + } + psStringStrip(tag); + if (*tag == 0) { + psFree(tag); + return psStringCopy("UNKNOWN"); + } + + return tag; +} + Index: /branches/rel-1-1/psLib/src/sys/psString.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psString.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psString.h (revision 12167) @@ -0,0 +1,322 @@ +/* @file psString.h + * + * @brief string utility functions + * + * String utility functions defined shall provide basic string copying + * capabilities. + * + * @author EAM, IfA + * @author Eric Van Alst, MHPCC + * @author David Robbins, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.38 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 22:27:30 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_STRING_H +#define PS_STRING_H + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include +#include +#include "psType.h" +#include "psList.h" + +/** This macro will convert the argument to a quoted string */ +#define PS_STRING(S) #S + +/** This macro returns a (static buffer containing) "file:line" */ +#ifdef __GNUC__ +const char *p_psFileLine(const char *file, int line) __attribute__((deprecated)); +#else // ifdef __GNUC__ +const char *p_psFileLine(const char *file, int line); +#endif // ifdef __GNUC__ +#define PS_FILE_LINE p_psFileLine(__FILE__,__LINE__) + + +/** Allocates a new psString. + * + * @return psString: Newly allocated string of length n. + */ +#ifdef DOXYGEN +psString psStringAlloc( + long nChar ///< Size of psString to allocate. +); +#else // ifdef DOXYGEN +psString p_psStringAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nChar ///< Size of psString to allocate. +); +#define psStringAlloc(nChar) \ + p_psStringAlloc(__FILE__, __LINE__, __func__, nChar) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psString structure, false otherwise. + */ +bool psMemCheckString( + psPtr ptr ///< the pointer whose type to check +); + + +/** Copies the input string + * + * This function shall allocate memory to the length of the input string plus + * one and copy the input string to the newly allocated memory. If 'string' + * is 'NULL' then 'NULL' is returned. + * + * @return psString: Copy of input string + */ +#ifdef DOXYGEN +psString psStringCopy( + const char *string ///< Input string of characters to copy +); +#else // ifdef DOXYGEN +psString p_psStringCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *string ///< Input string of characters to copy +); +#define psStringCopy(string) \ + p_psStringCopy(__FILE__, __LINE__, __func__, string) +#endif // ifdef DOXYGEN + + +/** Copies the input string up to the specified number of characters + * + * This function shall allocate memory to the length specified by nChar + * plus one and copy the input string to the newly allocated memory. + * This function will only copy nChar bytes from the input to new string, + * so if the input string is larger than nChar characters the copied + * string will be a substring of the input string. If the input string + * is smaller than nChar bytes then the remaining bytes allocated will + * be set to NULL. If 'string' is 'NULL' then 'NULL' is returned. + * + * @return psString: Copy of input string + */ +#ifdef DOXYGEN +psString psStringNCopy( + const char *string, ///< Input string of characters to copy + unsigned int nChar ///< Number of bytes to allocate for string copy +); +#else // ifdef DOXYGEN +psString p_psStringNCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *string, ///< Input string of characters to copy + unsigned int nChar ///< Number of bytes to allocate for string copy +); +#define psStringNCopy(string, nChar) \ + p_psStringNCopy(__FILE__, __LINE__, __func__, string, nChar) +#endif // ifdef DOXYGEN + + +/** Appends a format onto a string + * + * This function shall allocate a new string if dest is NULL. dest shall be + * automatically extended to the size of the new string. + * + * @return ssize_t: The length of the new string (excluding '\0') + */ +#ifdef DOXYGEN +ssize_t psStringAppend( + char **dest, ///< existing string + const char *format, ///< format to append + ... ///< format arguments +); +#else // ifdef DOXYGEN +ssize_t p_psStringAppend( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + char **dest, ///< existing string + const char *format, ///< format to append + ... ///< format arguments +#ifdef __GNUC__ +) __attribute__((format(printf, 5, 6))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#define psStringAppend(dest, ...) \ + p_psStringAppend(__FILE__, __LINE__, __func__, dest, __VA_ARGS__) +#endif // ifdef DOXYGEN + + +/** Appends a format onto a string + * + * This function shall allocate a new string if dest is NULL. dest shall be + * automatically extended to the size of the new string. + * + * @return ssize_t: The length of the new string (excluding '\0') + */ +#ifdef DOXYGEN +ssize_t psStringAppendV( + char **dest, ///< existing string + const char *format, ///< format to append + va_list ap ///< va_list of format arguments +); +#else // ifdef DOXYGEN +ssize_t p_psStringAppendV( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + char **dest, ///< existing string + const char *format, ///< format to append + va_list ap ///< va_list of format arguments +); +#define psStringAppendV(dest, format, ap) \ + p_psStringAppendV(__FILE__, __LINE__, __func__, dest, format, ap) +#endif // ifdef DOXYGEN + + +/** Prepends a format onto a string + * + * This function shall allocate a new string if dest is NULL. dest shall be + * automatically extended to the size of the new string. + * + * @return ssize_t: The length of the new string (excluding '\0') + */ +#ifdef DOXYGEN +ssize_t psStringPrepend( + char **dest, ///< existing string + const char *format, ///< format to append + ... ///< format arguments +); +#else // ifdef DOXYGEN +ssize_t p_psStringPrepend( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + char **dest, ///< existing string + const char *format, ///< format to append + ... ///< format arguments +#ifdef __GNUC__ +) __attribute__((format(printf, 5, 6))); +# else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#define psStringPrepend(dest, ...) \ + p_psStringPrepend(__FILE__, __LINE__, __func__, dest, __VA_ARGS__) +#endif // ifdef DOXYGEN + + +/** Prepends a format onto a string + * + * This function shall allocate a new string if dest is NULL. dest shall be + * automatically extended to the size of the new string. + * + * @return ssize_t: The length of the new string (excluding '\0') + */ +#ifdef DOXYGEN +ssize_t psStringPrependV( + char **dest, ///< existing string + const char *format, ///< format to append + va_list ap ///< va_list of format arguments +); +#else // ifdef DOXYGEN +ssize_t p_psStringPrependV( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + char **dest, ///< existing string + const char *format, ///< format to append + va_list ap ///< va_list of format arguments +); +#define psStringPrependV(dest, format, ap) \ + p_psStringPrependV(__FILE__, __LINE__, __func__, dest, format, ap) +#endif // ifdef DOXYGEN + + +/** Procedure to split the input string into a psList of psStrings. + * + * The string is split at any one of the characters in splitters. Split + * strings of zero length should not be included in the output list. + * + * @return psList*: The list of (split) psStrings. + */ +psList *psStringSplit( + const char *string, ///< String to split + const char *splitters, ///< Characters on which to split + bool multipleAreSignificant ///< Are multiple occurences significant? +); + + +/** Procedure to split the input string into a psArray of psStrings. + * + * The string is split at any one of the characters in splitters. Split + * strings of zero length should not be included in the output list. + * + * @return psArray*: The array of (split) psStrings. + */ +psArray *psStringSplitArray( + const char *string, ///< String to split + const char *splitters, ///< Characters on which to split + bool multipleAreSignificant ///< Are multiple occurences significant? +); + +// Given the input string, search for all copies of the key, and replace with +// the replacement value the input string may be freed if not needed +/** Procedure to search an input string and substitute strings where desired. + * + * The input string is searched for all instances of the key, which is then + * replaced with the replacement value wherever found. The input string may + * be freed if not needed. + * + * @return ssize_t: the length of the new string (excluding '\0') + */ +ssize_t psStringSubstitute ( + psString *input, ///< ptr to input string to be modified + const char *replace, ///< replacement value + const char *key ///< string to be replaced in input +); + + +// strip whitespace from head and tail of string +/** Procedure to strip the whitespace from the head and tail of a string. + * + * @return size_t: Number of whitespaces removed. + */ +size_t psStringStrip( + char *string ///< input string to be stripped. +); + + +/// Given a CVS keyword string, strip off the CVS-specific keyword to get the value +psString psStringStripCVS(const char *string, ///< The string, something like "$CVSKEYWORD: Value$" + const char *tagName ///< The name of the tag to remove, something like "CVSKEYWORD" + ); + +#define PS_ASSERT_STRING_NON_EMPTY(NAME, RVAL) \ +if (!(NAME) || strlen(NAME) == 0) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: String %s is NULL or empty.", \ + #NAME); \ + return(RVAL); \ +} + +#ifndef DOXYGEN +#if NO_STRCASESTR +// this means that the system's libc does not provide strcasestr() +#define strcasestr(...) p_psstrcasestr(__VA_ARGS__) +extern char *p_psstrcasestr (const char *haystack, const char *needle) + __THROW __attribute_pure__ __nonnull ((1, 2)); +#endif // if NO_STRCASESTR +#endif // ifndef DOXYGEN + + +/// @} +#endif // #ifndef PS_STRING_H Index: /branches/rel-1-1/psLib/src/sys/psTrace.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psTrace.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psTrace.c (revision 12167) @@ -0,0 +1,809 @@ +/** @file psTrace.c + * \brief basic run-time trace facilities + * \ingroup LogTrace + * + * This file will hold the code for procedures to insert + * trace messages into the code. + * + * @author Robert Lupton, Princeton University + * @author GLG, MHPCC + * + * @version $Revision: 1.85 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 01:15:49 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +/***************************************************************************** + NOTES: + In the SRD, higher trace levels correspond to a numerically lower trace + value in the code. This is a bit confusing. For example, a high-level + message might be something like "Begin Processing". The module programmer + might give that a numerically low trace level, such as 1, so then any + non-zero trace level in that code component will display thatmessage. + + We build a tree of trace components. Every node in the tree has a + depth, which is it's distance from the root. However, this is not + not the same thing as a node's "level", which corresponds to the + trace level of that node. + +I think the following is the correct behavior, but not sure: + PS_UNKNOWN_TRACE_LEVEL: We never set the level of a component to this + value. This value is only used when psTraceGetLevel is called with + a bad component name, or if the component root is undefined, I think. + + PS_DEFAULT_TRACE_LEVEL: This should only be used when adding the + intermediate components of a psS64 name. Ie. the "B" in .A.B.C + + *****************************************************************************/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +// Even if psLib is being built without tracing (PS_NO_TRACE is set) we still +// want to build the symbols for programs linked against psLib +#undef PS_NO_TRACE + +#include +#include +#include +#include +#include + +#include "psAssert.h" +#include "psTrace.h" +#include "psString.h" +#include "psError.h" +#include "psLogMsg.h" +#include "psMetadata.h" +#include "psMemory.h" + +#define MAX_HOSTNAME_LENGTH 256 +#define MAX_HEADER_LENGTH 256 +#define MAX_TRACE_LENGTH 1024 +#define MAX_COMPONENT_LENGTH 1024 + + +static p_psComponent* cRoot = NULL; // The root of the trace component +static bool traceTime = false; // Flag to include time info +static bool traceHost = false; // Flag to include host info +static bool traceLevel = false; // Flag to include level info +static bool traceName = false; // Flag to include name info +static bool traceMsg = true; // Flag to include message info +static int traceFD = STDOUT_FILENO; // default value + +static void componentFree(p_psComponent* comp); +static p_psComponent* componentAlloc(const char *name, int level); +static int getLevel(const char *facil); + +/***************************************************************************** +componentAlloc(): allocate memory for a new node, and initialize members. + *****************************************************************************/ +static p_psComponent* componentAlloc(const char *name, int level) +{ + assert(name); + + p_psComponent* comp = psAlloc(sizeof(p_psComponent)); + + psMemSetPersistent(comp,true); + psMemSetDeallocator(comp, (psFreeFunc) componentFree); + comp->name = psStringCopy(name); + psMemSetPersistent((psPtr)comp->name,true); + comp->level = level; + comp->n = 0; + comp->p_psSpecified = false; + comp->subcomp = NULL; + return comp; +} + +/***************************************************************************** +componentFree(): free the current node in the root tree, and all children +nodes as well. + *****************************************************************************/ +static void componentFree(p_psComponent* comp) +{ + if (comp == NULL) { + return; + } + + if (comp->subcomp != NULL) { + for (psS32 i = 0; i < comp->n; i++) { + psMemSetPersistent(comp->subcomp[i],false); + psFree(comp->subcomp[i]); + } + psMemSetPersistent(comp->subcomp,false); + psFree(comp->subcomp); + } + + psMemSetPersistent((psPtr)comp->name,false); + psFree((void *)comp->name); +} + +/***************************************************************************** +initTrace(): simply initialize the component root tree. +*****************************************************************************/ +static void initTrace(void) +{ + if (cRoot == NULL) { + cRoot = componentAlloc(".", PS_DEFAULT_TRACE_LEVEL); + } +} + +// Append the function name to the facility +// NB: declares TARGET! +#define FACILITY(TARGET, FUNC, FACIL) \ +size_t _facilLength = strlen(FACIL); /* Length of facility name */ \ +size_t _funcLength = strlen(FUNC); /* Length of function name */ \ +char TARGET[_facilLength + _funcLength + 2]; /* facility + the function name */ \ +strcpy(&TARGET[0], FACIL); \ +TARGET[_facilLength] = '.'; \ +strcpy(&TARGET[_facilLength + 1], FUNC); + + +/***************************************************************************** +Set all trace levels to zero. + +XXX: Currently, no function calls this routine. + *****************************************************************************/ +void p_psTraceReset(p_psComponent* currentNode) +{ + assert(currentNode); + + psS32 i = 0; + + if (NULL == currentNode) { + return; + } + + currentNode->level = 0; + for (i = 0; i < currentNode->n; i++) { + if (NULL == currentNode->subcomp[i]) { + psLogMsg("p_psTraceReset", PS_LOG_WARN, + _("Sub-component %d of node %s in trace tree is NULL."), + i, currentNode->name); + } else { + p_psTraceReset(currentNode->subcomp[i]); + } + } + return; +} + +/***************************************************************************** +Set all trace levels to zero. + *****************************************************************************/ +void psTraceReset() +{ + psFree(cRoot); + cRoot = NULL; +} + +/***************************************************************************** +componentAdd(): Adds the component named "addNodeName" to the root tree. + *****************************************************************************/ +static bool componentAdd(const char *addNodeName, psS32 level) +{ + assert(addNodeName); + + psS32 i = 0; // Loop index variable. + char name[MAX_COMPONENT_LENGTH]; // buffer for writeable copy. + char *firstComponent = NULL; // first component of name + p_psComponent* currentNode = cRoot; + psS32 nodeExists = 0; + + // XXX: Verify that this is the correct behavior. + if (strcmp("", addNodeName) == 0) { + psError(PS_ERR_BAD_PARAMETER_NULL,true, + _("Failed to add null component to trace tree.")); + return false; + } + + // Is this the root node? If so, simply set level and return. + if (strcmp(".", addNodeName) == 0) { + cRoot->level = level; + return true; + } + + if (addNodeName[0] != '.') { + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + _("Failed to add '%s' to the root component tree; component must start with '.'."), + addNodeName); + return false; + } + + strncpy(name, addNodeName, MAX_COMPONENT_LENGTH); + char *pname = name+1; // Take off the period + // Iterate through the components of addNodeName. Strip off the first + // component of the name, find that in the root tree, or add it if it + // does not exist, then move to the next component in the name. + + while (pname != NULL) { + firstComponent = pname; + pname = strchr(firstComponent, '.'); + if (pname != NULL) { + *pname = '\0'; + pname++; + } + nodeExists = 0; + for (i = 0; i < currentNode->n; i++) { + if (strcmp(currentNode->subcomp[i]->name, firstComponent) == 0) { + currentNode = currentNode->subcomp[i]; + nodeExists = 1; + if (pname == NULL) { + currentNode->level = level; + } + } + } + + if (nodeExists == 0) { + currentNode->subcomp = psRealloc(currentNode->subcomp, + (currentNode->n + 1) * sizeof(p_psComponent* )); + psMemSetPersistent(currentNode->subcomp,true); + + currentNode->n = (currentNode->n) + 1; + + if (pname == NULL) { + // This is the final component to add. + currentNode->subcomp[(currentNode->n) - 1] = + componentAlloc(firstComponent, level); + } else { + // We are adding an intermediate component. The trace level + // is not defined. An undefined trace level inherits the + // trace level of it's parent. However, we do not set that + // specifically here since that would inheritance to be a + // static, one-time, type of behavior. + + currentNode->subcomp[(currentNode->n) - 1] = + componentAlloc(firstComponent, PS_DEFAULT_TRACE_LEVEL); + } + currentNode = currentNode->subcomp[(currentNode->n) - 1]; + } + } + + return true; +} + +/***************************************************************************** + psSetTraceLevel(): add the component named "comp" to the component tree, + if it is not already there, and set it's trace level to "level". + + NOTE: We modified this so that the user may omit the leading "," in a + component name. Since the code was already implemented assuming the "." + was required, rather than change all that code, in this function, I + simply add a leading "." to the component name if there is none. + + Input: + comp + level + Output: + none + Returns: + zero +*****************************************************************************/ +int psTraceSetLevel(const char *comp, // component of interest + int level) // desired trace level +{ + PS_ASSERT_PTR_NON_NULL(comp, 0); + + char *compName = NULL; + int prevLevel = -1; + + // If the root component tree does not exist, then initialize it. + if (cRoot == NULL) { + initTrace(); + } + + // If the component name has no leading dot, then supply it. + if (comp[0] != '.') { + compName = (char *) psAlloc(10 + strlen(comp)); + strcpy(compName, "."); + compName = strcat(compName, comp); + } else { + compName = (char *) comp; + } + prevLevel = getLevel(compName); + // Add the new component to the component tree. + if ( !componentAdd(compName, level) ) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to set trace level (%d) to '%s'."), + level, + compName); + + if (comp[0] != '.') { + psFree(compName); + } + // return false; + return -1; + } + + if (comp[0] != '.') { + psFree(compName); + } + + // return true; + return prevLevel; +} + +/***************************************************************************** + doGetTraceLevel() + This function recursively searches the root component tree for the + component named "name", which is supplied by a parameter. If it + finds that component, it returns the level of that component. + Otherwise, it returns ???. + + NOTE: We modified this so that the user may omit the leading "," in a + component name. Since the code was already implemented assuming the "." + was required, rather than change all that code, in this function, I + simply add a leading "." to the component name if there is none. + + Inputs: + name: + Outputs: + none + Returns: + The trace level of the "name" component. + *****************************************************************************/ +static psS32 doGetTraceLevel(const char *aname) +{ + assert(aname); + char name[strlen(aname) + 1]; // need a writeable copy: for strsep() + char *pname = name; + char *firstComponent = NULL; // first component of name + p_psComponent* currentNode = cRoot; + psS32 i = 0; + psS32 defaultLevel = 0; + + if (NULL == currentNode) { + return (PS_UNKNOWN_TRACE_LEVEL); + } + + if (strcmp(".", aname) == 0) { + return (cRoot->level); + } + + if (aname[0] != '.') { + return (PS_UNKNOWN_TRACE_LEVEL); + } + + defaultLevel = cRoot->level; + strcpy(name, aname); + pname = name+1; + while (pname != NULL) { + firstComponent = pname; + pname = strchr(firstComponent, '.'); + if (pname != NULL) { + *pname = '\0'; + pname++; + } + for (i = 0; i < currentNode->n; i++) { + if (NULL == currentNode->subcomp[i]) { + psLogMsg("p_psTraceReset", PS_LOG_WARN, + _("Sub-component %d of node %s in trace tree is NULL."), + i, currentNode->name); + } + + if (strcmp(currentNode->subcomp[i]->name, firstComponent) == 0) { + currentNode = currentNode->subcomp[i]; + // For level inheritance purpose, we save the level of this + // component if it is not DEFAULT. + if (currentNode->level != PS_DEFAULT_TRACE_LEVEL) { + defaultLevel = currentNode->level; + } + // Determine if this is the last component: + if (pname == NULL) { + if (currentNode->level != PS_DEFAULT_TRACE_LEVEL) { + return (currentNode->level); + } else { + return(defaultLevel); + } + } + } + } + } + return(defaultLevel); +} + + +/***************************************************************************** + getLevel() + Return a trace level of "name" in the root component tree. If the + exact string of components in "name" does not exist in the root + tree, we return the deepest level of the match. + *****************************************************************************/ +static int getLevel(const char *name) +{ + if (cRoot == NULL) { + return (PS_UNKNOWN_TRACE_LEVEL); + } + + psS32 traceLevel; + + // If the component name has no leading dot, then supply it. + if (name[0] != '.') { + char compName[strlen(name) + 2]; + compName[0] = '.'; + strcpy(&compName[1], name); + + traceLevel = doGetTraceLevel(compName); + } else { + // Search the component root tree, determine the trace level. + traceLevel = doGetTraceLevel(name); + } + + // XXX: The default trace level is currently set at -1, which is not a + // valid trace level. This is convenient in determining whether or not + // a component should inherit the trace level from parent nodes. However, + // it's not clear that -1 should ever be returned by this function. + // The SDR is unclear on this point and we should probably request IfA + // comment. + if (traceLevel == PS_DEFAULT_TRACE_LEVEL) { + traceLevel = PS_THE_OTHER_DEFAULT_TRACE_LEVEL; + } + + return(traceLevel); +} + +int p_psTraceGetLevel(const char *file, + int lineno, + const char *func, + const char *name) +{ + PS_ASSERT_PTR_NON_NULL(name, 0); + PS_ASSERT_PTR_NON_NULL(func, 0); + + FACILITY(facility, func, name); + return getLevel(facility); +} + +/***************************************************************************** + doPrintTraceLevels() + This function recursively searches the component tree supplied by the + parameter "comp" and prints the name and level of each component. + Inputs: + comp: a node in the component tree. + level: the level of that node + Outputs: + none + Returns: + null + *****************************************************************************/ +static void doPrintTraceLevels(const p_psComponent* comp, + psS32 depth, + psS32 defLevel) +{ + assert(comp); + + char line[1024]; + psS32 i = 0; + + // XXX EAM : probably should just return if traceFD < 1 + if (traceFD < 1) + return; + + if (comp->name[0] == '\0') { + return; + } else { + if (comp->level == PS_DEFAULT_TRACE_LEVEL) { + sprintf(line,"%*s%-*s %d\n", depth, "", 20 - depth, comp->name, defLevel); + write (traceFD, line, strlen(line)); + } else { + sprintf(line, "%*s%-*s %d\n", depth, "", 20 - depth, comp->name, comp->level); + write (traceFD, line, strlen(line)); + } + } + + for (i = 0; i < comp->n; i++) { + if (comp->level == PS_DEFAULT_TRACE_LEVEL) { + doPrintTraceLevels(comp->subcomp[i], depth + 1, defLevel); + } else { + doPrintTraceLevels(comp->subcomp[i], depth + 1, comp->level); + } + } +} + + +/***************************************************************************** +psPrintTraceLevels(): Simply print all the trace levels in the trace level +component tree. +Inputs: + none +Outputs: + none +Returns: + null +*****************************************************************************/ +void psTracePrintLevels(void) +{ + if (cRoot == NULL) { + return; + } + + doPrintTraceLevels(cRoot, 0, PS_THE_OTHER_DEFAULT_TRACE_LEVEL); +} + +void psTraceV(const char *comp, + int level, + const char *format, + va_list ap) +{ + PS_ASSERT_PTR_NON_NULL(comp, ); + PS_ASSERT_PTR_NON_NULL(format, ); + + // XXX EAM : fd < 1 does not print messages + if (traceFD < 1) { + return; + } + + static bool first = true; // First time we've been called? + static char hostname[MAX_HOSTNAME_LENGTH + 1]; // Host name + if (first) { + first = false; + gethostname(hostname, MAX_HOSTNAME_LENGTH); + } + + // Only display this message if it's trace level is less than the level + // of it's associatedcomponent. + if (level <= getLevel(comp)) { + + char clevel = 0; // letter-name for level + switch (level) { + case PS_LOG_ABORT: + clevel = 'A'; + break; + case PS_LOG_ERROR: + clevel = 'E'; + break; + case PS_LOG_WARN: + clevel = 'W'; + break; + case PS_LOG_INFO: + clevel = 'I'; + break; + default: + if (level >= 4) { + clevel = level + '0'; + } else { + psTrace("psLib.sys", 2, "Invalid logMsg level: %d (%s)\n", level, format); + level = (level < 0) ? 0 : 9; + clevel = level + '0'; + } + } + + int maxLength = MAX_HEADER_LENGTH; // Maximum length of header string + char head[maxLength + 2]; // the added two are for the ending | and \0 + char *head_ptr = head; // where we've got to in head + + // Create the various log fields... + if (traceTime) { + time_t clock = time(NULL); // The current time. + struct tm *utc = gmtime(&clock); // The current gm time. + maxLength -= snprintf(head_ptr, maxLength, "%4d:%02d:%02d %02d:%02d:%02dZ", + utc->tm_year + 1900, utc->tm_mon + 1, utc->tm_mday, + utc->tm_hour, utc->tm_min, utc->tm_sec) - 1; + head_ptr += strlen(head_ptr); + } + // Hostname should be 20 characters. + if (traceHost) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%-20s", hostname); + head_ptr += strlen(head_ptr); + } + if (traceLevel) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%c", clevel); + head_ptr += strlen(head_ptr); + } + if (traceName) { + if (head_ptr > head) { + *head_ptr++ = '|'; + } + maxLength -= snprintf(head_ptr, maxLength, "%s", comp); + + head_ptr += strlen(head_ptr); + } + + if (head_ptr > head) { + *head_ptr++ = '\n'; + } else if (!traceMsg) { // no output desired + return; + } + *head_ptr = '\0'; + + write(traceFD, head, strlen(head)); + + if (traceMsg) { + // We indent each message one space for each level of the message. + for (int i = 0; i < level; i++) { + write (traceFD, " ", 1); + } + psString line = NULL; // Line to print + psStringAppendV(&line, format, ap); + write (traceFD, line, strlen(line)); + if (line[strlen(line) - 1] != '\n') { + write(traceFD, "\n", 1); + } + psFree(line); + } else { + write(traceFD, "\n", 1); + } + + // XXX: what is fd-appropriate equivalent of fflush? + } +} + +/***************************************************************************** +p_psTrace(): we display the trace message to standard output if the trace +level of that message, supplied by the parameter "level" is higher than the +trace level that is currently associated with the component named by the +parameter "comp". +Input: + comp + level + ... a printf-style output string. +Output: + none +Return: + null + *****************************************************************************/ +void p_psTrace( + const char* file, ///< file name + int lineno, ///< line number in file + const char* func, ///< function name + const char *facil, ///< facilty of interest + psS32 level, ///< desired trace level + const char *format, ///< printf-style format command + ... ///< trace message arguments +) +{ + PS_ASSERT_PTR_NON_NULL(file, ); + PS_ASSERT_PTR_NON_NULL(func, ); + PS_ASSERT_PTR_NON_NULL(facil, ); + PS_ASSERT_PTR_NON_NULL(format, ); + + FACILITY(name, func, facil); + + va_list ap; + va_start(ap, format); + psTraceV(name, level, format, ap); + va_end(ap); +} + +bool psTraceSetDestination(int fd) +{ + if (fd < 0) { + return false; + } + + if (traceFD > STDERR_FILENO) { + close(traceFD); + } + traceFD = fd; + return true; +} + +int psTraceGetDestination() +{ + return traceFD; +} + +/***************************************************************************** +psTraceSetFormat(): Set the format of psTrace output. More precisely, + provide a string consisting of the letters {H (host), L (level), M + (message), N (name), T (time)}. The default is "HLMNT". This string + determines whether or not they associated type of information will be + included in message traces. It does not determine the order in which that + information will appear (that order is fixed). + +Input: + fmt: a string specifying the format. +Return: + NULL. + *****************************************************************************/ +bool psTraceSetFormat(const char *format) +{ + // assume none. + traceHost = false; + traceLevel = false; + traceMsg = false; + traceName = false; + traceTime = false; + + // if fmt is NULL, no logging is desired. + if (format == NULL) { + return false; + } + + // XXX: What is the purpose of this conditional. + if (strlen(format) == 0) { + format = "THLNM"; + } + // Step through each character in the format string. For each letter + // in that string, set the appropriate logging. + + for (const char *ptr = format; *ptr != '\0'; ptr++) { + switch (*ptr) { + case 'H': + case 'h': + traceHost = true; + break; + case 'L': + case 'l': + traceLevel = true; + break; + case 'M': + case 'm': + traceMsg = true; + break; + case 'N': + case 'n': + traceName = true; + break; + case 'T': + case 't': + traceTime = true; + break; + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Unknown logging keyword %c."), *ptr); + return false; + } + } + + // XXX: If one must at least log error messages, why don't we set logMsg = true here? + if (!traceMsg) { + psTrace("psLib.sys", 1, + "You must at least trace error messages (You chose \"%s\")", format); + + } + return true; +} + + +static void doGetTraceLevels(psMetadata *out, // Output metadata with the trace levels + const p_psComponent* comp, // Component to add + psString parent, // Name of parent level + int defLevel // Default level + ) +{ + if (comp->name[0] == '\0') { + return; + } + + psString name = psStringCopy(parent); // Name of this level + if (comp->name[0] == '.') { + psStringAppend(&name, "%s", comp->name + 1); + } else if (!parent) { + psStringAppend(&name, "%s", comp->name); + } else { + psStringAppend(&name, ".%s", comp->name); + } + + int level = (comp->level == PS_DEFAULT_TRACE_LEVEL) ? defLevel : comp->level; // Level for component + if (name) { + psMetadataAddS32(out, PS_LIST_TAIL, name, 0, NULL, level); + } + for (int i = 0; i < comp->n; i++) { + doGetTraceLevels(out, comp->subcomp[i], name, level); + } + + psFree(name); + + return; +} + + +psMetadata *psTraceLevels(void) +{ + if (cRoot == NULL) { + return psMetadataAlloc(); + } + + psMetadata *out = psMetadataAlloc();// Output metadata with the levels + doGetTraceLevels(out, cRoot, NULL, PS_THE_OTHER_DEFAULT_TRACE_LEVEL); + + return out; +} Index: /branches/rel-1-1/psLib/src/sys/psTrace.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psTrace.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psTrace.h (revision 12167) @@ -0,0 +1,182 @@ +/** @file psTrace.h + * + * @brief basic run-time trace facilities + * + * This file will hold the prototypes for defining procedures to insert + * trace messages into the code. + * + * @author Robert Lupton, Princeton University + * @author GLG, MHPCC + * + * @version $Revision: 1.55 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 01:59:28 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_TRACE_H +#define PS_TRACE_H 1 + +/// @addtogroup SysUtils System Utilities +/// @{ + +#include +#include "psMetadata.h" + +#define PS_UNKNOWN_TRACE_LEVEL -9999 // we don't know this name's level +#define PS_DEFAULT_TRACE_LEVEL -1 +#define PS_THE_OTHER_DEFAULT_TRACE_LEVEL 0 + +enum { + PS_TRACE_TO_NONE = 0, ///< turn off all traces + PS_TRACE_TO_STDOUT = 1, ///< trace to system's stdout + PS_TRACE_TO_STDERR = 2, ///< trace to system's stderr +}; + +/** Functions **************************************************************/ + +//#define PS_NO_TRACE 1 ///< to turn off all tracing + +// XXX EAM : the old 'empty' values of (void) 0 are dangerous +# if defined(PS_NO_TRACE) + # define psTrace(facil, level, ...) /* do nothing */ + # define p_psTrace(facil, level, ...) /* do nothing */ + # define psTraceSetLevel(facil,level) /* do nothing */ + # define psTraceGetLevel(facil) -INFINITY /* really really low level */ + # define psTraceReset() /* do nothing */ + # define psTraceFree() /* do nothing */ + # define psTracePrintLevels() /* do nothing */ + # define psTraceSetDestination(fp) /* do nothing */ + # define psTraceGetDestination() 2 /* destination is stderr */ + # define psTraceSetFormat(format) /* do nothing */ + # define PS_TRACE_ON 0 + + # else /* PS_NO_TRACE */ + # define PS_TRACE_ON 1 + + /** Basic structure for the component tree. A component is a string of the + form aaa.bbb.ccc, and may itself contain further subcomponents. The + Component structure doesn't in fact contain it's full name, but only the + last part. */ + typedef struct p_psComponent + { + const char *name; ///< last part of name of component + psS32 level; ///< trace level for this component + bool p_psSpecified; ///< whether the component is specified + psS32 n; ///< number of subcomponents + struct p_psComponent* *subcomp; ///< next level of subcomponents + } +p_psComponent; + + +/** This procedure sets the trace format for future trace messages. The argument + * must be a character string consistsing of the letters H (host), L + * (level), M (message), N (name), and T (time). The default is "THLNM". + * Deleting a letter from the string will cause the associated information + * to not be logged. This procedure does not alter the order in which + * the messages are displayed. + * + * @return bool: True if successful, otherwise false. + */ +bool psTraceSetFormat( + const char *format ///< Specifies the system trace format +); + +/** Sends a trace message. */ +#ifdef DOXYGEN +void psTrace( + const char *facil, ///< facilty of interest + int level, ///< desired trace level + const char *format, ///< printf-style format command + ... ///< trace message arguments +); +#else // ifdef DOXYGEN +void p_psTrace( + const char* file, ///< file name + int lineno, ///< line number in file + const char* func, ///< function name + const char *facil, ///< facilty of interest + psS32 level, ///< desired trace level + const char *format, ///< printf-style format command + ... ///< trace message arguments +#ifdef __GNUC__ +) __attribute__((format(printf, 6, 7))); +#else // ifdef __GNUC__ +); +#endif // ifdef __GNUC__ +#ifndef SWIG +#define psTrace(facil, level, ...) \ + p_psTrace(__FILE__,__LINE__,__func__,facil, level, __VA_ARGS__) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + +/** Get the trace level + * + * @return int: Trace Level + */ +#ifdef DOXYGEN +int psTraceGetLevel( + const char *facil ///< facilty of interest +); +#else // ifdef DOXYGEN +int p_psTraceGetLevel( + const char* file, ///< file name + int lineno, ///< line number in file + const char *func, ///< function name + const char *facil ///< facilty of interest +); +#ifndef SWIG +#define psTraceGetLevel(facil) \ + p_psTraceGetLevel(__FILE__,__LINE__,__func__,facil) +#endif // ifndef SWIG +#endif // ifdef DOXYGEN + + + +/** Sends a trace message. */ +void psTraceV( + const char *facil, ///< facilty of interest + int level, ///< desired trace level + const char *format, ///< printf-style format command + va_list ap ///< varargs argument list +); + + +/** Set trace level + * + * @return int: The previous level. + */ +int psTraceSetLevel( + const char *facil, ///< facilty of interest + int level ///< desired trace level +); + +/// Set all trace levels to zero (do not free nodes in the facility tree). +void psTraceReset(void); + + +/// print trace levels +void psTracePrintLevels(void); + + +/// Set the destination of future trace messages. +bool psTraceSetDestination( + int fd ///< File descriptor +); + + +/** Get the current destination for trace messages. + * + * @return FILE*: File Destination + */ +int psTraceGetDestination(void); + + +/// Return a psMetadata summarising the trace levels +psMetadata *psTraceLevels(void); + + +/// @} +#endif /* PS_NO_TRACE */ +#endif /* PS_TRACE_H */ Index: /branches/rel-1-1/psLib/src/sys/psType.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/psType.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psType.c (revision 12167) @@ -0,0 +1,208 @@ +/** @file psType.c +* +* @brief Contains psType checking functions +* +* @author Robert DeSonia, MHPCC +* @author Robert Lupton, Princeton University +* @author Joshua Hoblitt, University of Hawaii +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-03 05:54:08 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#if HAVE_CONFIG_H +# include "config.h" +#endif + +#include + +#include "psType.h" +#include "psBitSet.h" +#include "psFits.h" +#include "psPixels.h" +#include "psSphereOps.h" +#include "psMinimizeLMM.h" +#include "psImageConvolve.h" +#include "psTime.h" +#include "psLine.h" +#include "psRegion.h" +#include "psHistogram.h" +#include "psMemory.h" + +bool psMemCheckType(psDataType type, + psPtr ptr) +{ + if (!ptr) { + return false; + } + + switch(type) { + case PS_DATA_ARRAY: + if (psMemCheckArray(ptr)) { + return true; + } + break; + case PS_DATA_BITSET: + if (psMemCheckBitSet(ptr)) { + return true; + } + break; + case PS_DATA_CUBE: + if (psMemCheckCube(ptr)) { + return true; + } + break; + case PS_DATA_FITS: + if (psMemCheckFits(ptr)) { + return true; + } + break; + case PS_DATA_HASH: + if (psMemCheckHash(ptr)) { + return true; + } + break; + case PS_DATA_HISTOGRAM: + if (psMemCheckHistogram(ptr)) { + return true; + } + break; + case PS_DATA_IMAGE: + if (psMemCheckImage(ptr)) { + return true; + } + break; + case PS_DATA_KERNEL: + if (psMemCheckKernel(ptr)) { + return true; + } + break; + case PS_DATA_LINE: + if (psMemCheckLine(ptr)) { + return true; + } + break; + case PS_DATA_LIST: + if (psMemCheckList(ptr)) { + return true; + } + break; + case PS_DATA_LOOKUPTABLE: + if (psMemCheckLookupTable(ptr)) { + return true; + } + break; + case PS_DATA_METADATA: + if (psMemCheckMetadata(ptr)) { + return true; + } + break; + case PS_DATA_METADATAITEM: + if (psMemCheckMetadataItem(ptr)) { + return true; + } + break; + case PS_DATA_MINIMIZATION: + if (psMemCheckMinimization(ptr)) { + return true; + } + break; + case PS_DATA_PIXELS: + if (psMemCheckPixels(ptr)) { + return true; + } + break; + case PS_DATA_PLANE: + if (psMemCheckPlane(ptr)) { + return true; + } + break; + case PS_DATA_PLANEDISTORT: + if (psMemCheckPlaneDistort(ptr)) { + return true; + } + break; + case PS_DATA_PLANETRANSFORM: + if (psMemCheckPlaneTransform(ptr)) { + return true; + } + break; + case PS_DATA_POLYNOMIAL1D: + if (psMemCheckPolynomial1D(ptr)) { + return true; + } + break; + case PS_DATA_POLYNOMIAL2D: + if (psMemCheckPolynomial2D(ptr)) { + return true; + } + break; + case PS_DATA_POLYNOMIAL3D: + if (psMemCheckPolynomial3D(ptr)) { + return true; + } + break; + case PS_DATA_POLYNOMIAL4D: + if (psMemCheckPolynomial4D(ptr)) { + return true; + } + break; + case PS_DATA_PROJECTION: + if (psMemCheckProjection(ptr)) { + return true; + } + break; + case PS_DATA_REGION: + if (psMemCheckRegion(ptr)) { + return true; + } + break; + case PS_DATA_SCALAR: + if (psMemCheckScalar(ptr)) { + return true; + } + break; + case PS_DATA_SPHERE: + if (psMemCheckSphere(ptr)) { + return true; + } + break; + case PS_DATA_SPHEREROT: + if (psMemCheckSphereRot(ptr)) { + return true; + } + break; + case PS_DATA_SPLINE1D: + if (psMemCheckSpline1D(ptr)) { + return true; + } + break; + case PS_DATA_STATS: + if (psMemCheckStats(ptr)) { + return true; + } + break; + case PS_DATA_STRING: + if (psMemCheckString(ptr)) { + return true; + } + break; + case PS_DATA_TIME: + if (psMemCheckTime(ptr)) { + return true; + } + break; + case PS_DATA_VECTOR: + if (psMemCheckVector(ptr)) { + return true; + } + break; + default: + // error state -- fall through to returning false + break; + } + + return false; +} Index: /branches/rel-1-1/psLib/src/sys/psType.h =================================================================== --- /branches/rel-1-1/psLib/src/sys/psType.h (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/psType.h (revision 12167) @@ -0,0 +1,320 @@ +/** @file psType.h +* +* @brief Contains support for basic types +* +* This file defines common datatypes used throughout psLib. +* +* @ingroup DataContainer +* +* @author Robert DeSonia, MHPCC +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.56 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 01:59:28 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PS_TYPE_H +#define PS_TYPE_H + +/// @addtogroup DataContainer Data Containers +/// @{ + +#include +#include +#include +#include + +/******************************************************************************/ + +/* TYPE DEFINITIONS */ + +/******************************************************************************/ + +/** Basic data types used by the containers. + * + * The basic types of the primitives used by psLib are defined within this enum. This enum is in turn used by + * the psType struct. + * + */ + +typedef uint8_t psU8; ///< 8-bit unsigned int +typedef uint16_t psU16; ///< 16-bit unsigned int +typedef uint32_t psU32; ///< 32-bit unsigned int +typedef uint64_t psU64; ///< 64-bit unsigned int +typedef int8_t psS8; ///< 8-bit signed int +typedef int16_t psS16; ///< 16-bit signed int +typedef int32_t psS32; ///< 32-bit signed int +typedef int64_t psS64; ///< 64-bit signed int +typedef float psF32; ///< 32-bit floating point +typedef double psF64; ///< 64-bit floating point + +#ifdef SWIG +/** 32-bit complex value */ +typedef struct +{ + float re, im; +} +psC32; + + +/** 64-bit complex value */ +typedef struct +{ + double re,im; +} +psC64; + + +#else // SWIG +typedef float complex psC32; ///< complex with 32-bit floating point Real and Imagary numbers +typedef double complex psC64; ///< complex with 64-bit floating point Real and Imagary numbers +#endif // !SWIG + +typedef char* psString; ///< string value +typedef void* psPtr; ///< void pointer +// XXX psBool can't be removed until all macros that 'generate' this type are +// fixed -JH +// #ifdef __GNUC__ +// typedef bool psBool __attribute__ ((deprecated)); ///< boolean value +//#else // ifdef __GNUC__ +typedef bool psBool; ///< boolean value +// #endif // fdef __GNUC__ +typedef bool psBOOL; ///< allow psBOOL to be used instead of psBool (for macros) + +/** Enumeration of data types for function elements. + * Contains replacements for native types. + */ +typedef enum { + PS_TYPE_S8 = 0x0101, ///< Character. + PS_TYPE_S16 = 0x0102, ///< Short integer. + PS_TYPE_S32 = 0x0104, ///< Integer. + PS_TYPE_S64 = 0x0108, ///< Long integer. + PS_TYPE_U8 = 0x0301, ///< Unsigned character. + PS_TYPE_U16 = 0x0302, ///< Unsigned psS16 integer. + PS_TYPE_U32 = 0x0304, ///< Unsigned integer. + PS_TYPE_U64 = 0x0308, ///< Unsigned psS64 integer. + PS_TYPE_F32 = 0x0404, ///< Single-precision Floating point. + PS_TYPE_F64 = 0x0408, ///< Double-precision floating point. + PS_TYPE_C32 = 0x0808, ///< Complex numbers consisting of single-precision floating point. + PS_TYPE_C64 = 0x0810, ///< Complex numbers consisting of double-precision floating point. + PS_TYPE_BOOL = 0x1301 ///< Boolean. +} psElemType; + +/** Enumeration primarily used with metadata which defines a data structure + * e.g., list, array, FITS file, etc. +*/ +typedef enum { + PS_DATA_S8 = PS_TYPE_S8, ///< psS8 + PS_DATA_S16 = PS_TYPE_S16, ///< psS16 + PS_DATA_S32 = PS_TYPE_S32, ///< psS32 + PS_DATA_S64 = PS_TYPE_S64, ///< psS64 + PS_DATA_U8 = PS_TYPE_U8, ///< psU8 + PS_DATA_U16 = PS_TYPE_U16, ///< psU16 + PS_DATA_U32 = PS_TYPE_U32, ///< psU32 + PS_DATA_U64 = PS_TYPE_U64, ///< psU64 + PS_DATA_F32 = PS_TYPE_F32, ///< psF32 + PS_DATA_F64 = PS_TYPE_F64, ///< psF64 + PS_DATA_BOOL = PS_TYPE_BOOL, ///< psBool + PS_DATA_STRING = 0x10000, ///< psString (char *) + PS_DATA_ARRAY, ///< psArray + PS_DATA_BITSET, ///< psBitSet + PS_DATA_CUBE, ///< psCube + PS_DATA_FITS, ///< psFits + PS_DATA_HASH, ///< psHash + PS_DATA_HISTOGRAM, ///< psHistogram + PS_DATA_IMAGE, ///< psImage + PS_DATA_KERNEL, ///< psKernel + PS_DATA_LINE, ///< psLine + PS_DATA_LIST, ///< psList + PS_DATA_LOOKUPTABLE, ///< psLookupTable + PS_DATA_METADATA, ///< psMetadata + PS_DATA_METADATAITEM, ///< psMetadataItem + PS_DATA_MINIMIZATION, ///< psMinimization + PS_DATA_PIXELS, ///< psPixels + PS_DATA_PLANE, ///< psPlane + PS_DATA_PLANEDISTORT, ///< psPlaneDistort + PS_DATA_PLANETRANSFORM, ///< psPlaneTransform + PS_DATA_POLYNOMIAL1D, ///< psPolynomial1D + PS_DATA_POLYNOMIAL2D, ///< psPolynomial2D + PS_DATA_POLYNOMIAL3D, ///< psPolynomial3D + PS_DATA_POLYNOMIAL4D, ///< psPolynomial4D + PS_DATA_PROJECTION, ///< psProjection + PS_DATA_REGION, ///< psRegion + PS_DATA_SCALAR, ///< psScalar + PS_DATA_SPHERE, ///< psSphere + PS_DATA_SPHEREROT, ///< psSphereTransform + PS_DATA_SPLINE1D, ///< psSpline1D + PS_DATA_STATS, ///< psStats + PS_DATA_TIME, ///< psTime + PS_DATA_VECTOR, ///< psVector + PS_DATA_UNKNOWN, ///< Other data of an unknown type + PS_DATA_METADATA_MULTI ///< Used internally for metadata; not a 'real' type +} psDataType; + +#define PS_TYPE_MASK PS_TYPE_U8 /**< the psElemType to use for mask image */ +#define PS_TYPE_MASK_DATA U8 /**< the data member to use for mask image */ +#define PS_TYPE_MASK_NAME "psU8" /**< the data type for mask as a string */ + +typedef psU8 psMaskType; ///< the C datatype for a mask image + +#define PS_MIN_S8 INT8_MIN /**< minimum valid psS8 value */ +#define PS_MIN_S16 INT16_MIN /**< minimum valid psS16 value */ +#define PS_MIN_S32 INT32_MIN /**< minimum valid psS32 value */ +#define PS_MIN_S64 INT64_MIN /**< minimum valid psS64 value */ +#define PS_MIN_U8 0 /**< minimum valid psU8 value */ +#define PS_MIN_U16 0 /**< minimum valid psU16 value */ +#define PS_MIN_U32 0 /**< minimum valid psU32 value */ +#define PS_MIN_U64 0 /**< minimum valid psU64 value */ +#define PS_MIN_F32 -FLT_MAX /**< minimum valid psF32 value */ +#define PS_MIN_F64 -DBL_MAX /**< minimum valid psF64 value */ +#define PS_MIN_C32 -FLT_MAX /**< minimum valid real or imaginary psC32 value */ +#define PS_MIN_C64 -DBL_MAX /**< minimum valid real or imaginary psC32 value */ + +#define PS_MAX_S8 INT8_MAX /**< maximum valid psS8 value */ +#define PS_MAX_S16 INT16_MAX /**< maximum valid psS16 value */ +#define PS_MAX_S32 INT32_MAX /**< maximum valid psS32 value */ +#define PS_MAX_S64 INT64_MAX /**< maximum valid psS64 value */ +#define PS_MAX_U8 UINT8_MAX /**< maximum valid psU8 value */ +#define PS_MAX_U16 UINT16_MAX /**< maximum valid psU16 value */ +#define PS_MAX_U32 UINT32_MAX /**< maximum valid psU32 value */ +#define PS_MAX_U64 UINT64_MAX /**< maximum valid psU64 value */ +#define PS_MAX_F32 FLT_MAX /**< maximum valid psF32 value */ +#define PS_MAX_F64 DBL_MAX /**< maximum valid psF64 value */ +#define PS_MAX_C32 FLT_MAX /**< maximum valid real or imaginary psC32 value */ +#define PS_MAX_C64 DBL_MAX /**< maximum valid real or imaginary psC32 value */ + +#define PS_TYPE_BOOL_NAME "psBool" +#define PS_TYPE_S8_NAME "psS8" +#define PS_TYPE_S16_NAME "psS16" +#define PS_TYPE_S32_NAME "psS32" +#define PS_TYPE_S64_NAME "psS64" +#define PS_TYPE_U8_NAME "psU8" +#define PS_TYPE_U16_NAME "psU16" +#define PS_TYPE_U32_NAME "psU32" +#define PS_TYPE_U64_NAME "psU64" +#define PS_TYPE_F32_NAME "psF32" +#define PS_TYPE_F64_NAME "psF64" +#define PS_TYPE_C32_NAME "psC32" +#define PS_TYPE_C64_NAME "psC64" + +#define PS_TYPE_NAME(value,type) \ +switch(type) { \ +case PS_TYPE_BOOL: \ + value = PS_TYPE_BOOL_NAME; \ + break; \ +case PS_TYPE_S8: \ + value = PS_TYPE_S8_NAME; \ + break; \ +case PS_TYPE_S16: \ + value = PS_TYPE_S16_NAME; \ + break; \ +case PS_TYPE_S32: \ + value = PS_TYPE_S32_NAME; \ + break; \ +case PS_TYPE_S64: \ + value = PS_TYPE_S64_NAME; \ + break; \ +case PS_TYPE_U8: \ + value = PS_TYPE_U8_NAME; \ + break; \ +case PS_TYPE_U16: \ + value = PS_TYPE_U16_NAME; \ + break; \ +case PS_TYPE_U32: \ + value = PS_TYPE_U32_NAME; \ + break; \ +case PS_TYPE_U64: \ + value = PS_TYPE_U64_NAME; \ + break; \ +case PS_TYPE_F32: \ + value = PS_TYPE_F32_NAME; \ + break; \ +case PS_TYPE_F64: \ + value = PS_TYPE_F64_NAME; \ + break; \ +case PS_TYPE_C32: \ + value = PS_TYPE_C32_NAME; \ + break; \ +case PS_TYPE_C64: \ + value = PS_TYPE_C64_NAME; \ + break; \ +default: \ + value = "unknown"; \ +}; + +/// Macro to get the bad pixel reason code (stored as part of mask value) +#define PS_BADPIXEL_BITMASK 0x0f +#define PS_GET_BADPIXEL(maskValue) (maskValue & PS_BADPIXEL_BITMASK) + +#define PS_IS_BADPIXEL(maskValue) (PS_GET_BADPIXEL(maskValue) != 0) + +/// Macro to apply a bad pixel reason code to mask image +#define PS_SET_BADPIXEL(maskValue, reasonCode) \ +{ \ + maskValue = (psMaskType)((reasonCode & PS_BADPIXEL_BITMASK) | (maskValue & ~PS_BADPIXEL_BITMASK)); \ +} + +/// Macro to determine if the psElemType is an integer. +#define PS_IS_PSELEMTYPE_INT(x) ((x & 0x100) == 0x100) +/// Macro to determine if the psElemType is unsigned. +#define PS_IS_PSELEMTYPE_UNSIGNED(x) ((x & 0x200) == 0x200) +/// Macro to determine if the psElemType is a real (non-complex) floating-point type. +#define PS_IS_PSELEMTYPE_REAL(x) ((x & 0x400) == 0x400) +/// Macro to determine if the psElemType is complex number type. +#define PS_IS_PSELEMTYPE_COMPLEX(x) ((x & 0x800) == 0x800) +/// Macro to determine if the psElemType is boolean type. +#define PS_IS_PSELEMTYPE_BOOL(x) ((x & 0x1000) == 0x1000) +/// Macro to determine the storage size, in bytes, of the psElemType. +#define PSELEMTYPE_SIZEOF(x) (x & 0xFF) + +/** Dimensions of a data type. + * + * The dimensions of containers used by psLib are defined within this enum. This enum is used by the psType +struct. * + */ +typedef enum { + PS_DIMEN_SCALAR, ///< Scalar. + PS_DIMEN_VECTOR, ///< Vector. + PS_DIMEN_TRANSV, ///< Transposed vector. + PS_DIMEN_IMAGE, ///< Image. + PS_DIMEN_OTHER ///< Something else that's not supported for arithmetic. +} psDimen; + +/** The type of a data type. + * + * All psLib complex types consist of primitive components. This struct provides the description of those + * primitives. + * + */ +typedef struct +{ + psElemType type; ///< The type + psDimen dimen; ///< The dimensionality. +} +psMathType; + +/** The type of a basic data type + * + * All psLib complex types consist of primitive components. This structure provides the ability to cast + * an unknown data structure to safely test the underlining data type. + * + */ +typedef struct +{ + psMathType type; ///< Data type information +} +psMath; + +/** Checks the deallocator to see if the pointer matches the desired datatype. + * + * @return bool: True if type matches, otherwise false. + */ +bool psMemCheckType( + psDataType type, ///< The desired psDataType to match + psPtr ptr ///< The desired pointer to match +); + +/// @} +#endif // #ifndef PS_TYPE_H Index: /branches/rel-1-1/psLib/src/sys/strcasestr.c =================================================================== --- /branches/rel-1-1/psLib/src/sys/strcasestr.c (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/strcasestr.c (revision 12167) @@ -0,0 +1,137 @@ +/* Return the offset of one string within another. + Copyright (C) 1994, 1996-2000, 2004 Free Software Foundation, Inc. + This file is part of the GNU C Library. + + The GNU C Library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + + The GNU C Library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with the GNU C Library; if not, write to the Free + Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA + 02111-1307 USA. */ + +/* + * My personal strstr() implementation that beats most other algorithms. + * Until someone tells me otherwise, I assume that this is the + * fastest implementation of strstr() in C. + * I deliberately chose not to comment it. You should have at least + * as much fun trying to understand it, as I had to write it :-). + * + * Stephen R. van den Berg, berg@pool.informatik.rwth-aachen.de */ + +#if HAVE_CONFIG_H +# include +#endif + +#include + +#if defined _LIBC || defined HAVE_STRING_H +# include +#endif + +#ifdef _LIBC +# include +# define TOLOWER(c) __tolower_l ((unsigned char) c, loc) +#else +# define TOLOWER(c) _tolower (c) +#endif + +typedef unsigned chartype; + +#undef strcasestr +#undef __strcasestr + +// was named __strcasestr (phaystack, pneedle) +char * +p_psstrcasestr (phaystack, pneedle) +const char *phaystack; +const char *pneedle; +{ + register const unsigned char *haystack, *needle; + register chartype b, c; + #ifdef _LIBC + + __locale_t loc = _NL_CURRENT_LOCALE; + #endif + + haystack = (const unsigned char *) phaystack; + needle = (const unsigned char *) pneedle; + + b = TOLOWER (*needle); + if (b != '\0') { + haystack--; /* possible ANSI violation */ + do { + c = *++haystack; + if (c == '\0') + goto ret0; + } while (TOLOWER (c) != (int) b); + + c = TOLOWER (*++needle); + if (c == '\0') + goto foundneedle; + ++needle; + goto jin; + + for (;;) { + register chartype a; + register const unsigned char *rhaystack, *rneedle; + + do { + a = *++haystack; + if (a == '\0') + goto ret0; + if (TOLOWER (a) == (int) b) + break; + a = *++haystack; + if (a == '\0') + goto ret0; +shloop: + ; + } while (TOLOWER (a) != (int) b); + +jin: + a = *++haystack; + if (a == '\0') + goto ret0; + + if (TOLOWER (a) != (int) c) + goto shloop; + + rhaystack = haystack-- + 1; + rneedle = needle; + a = TOLOWER (*rneedle); + + if (TOLOWER (*rhaystack) == (int) a) + do { + if (a == '\0') + goto foundneedle; + ++rhaystack; + a = TOLOWER (*++needle); + if (TOLOWER (*rhaystack) != (int) a) + break; + if (a == '\0') + goto foundneedle; + ++rhaystack; + a = TOLOWER (*++needle); + } while (TOLOWER (*rhaystack) == (int) a); + + needle = rneedle; /* took the register-poor approach */ + + if (a == '\0') + break; + } + } +foundneedle: + return (char*) haystack; +ret0: + return 0; +} + +//weak_alias (__strcasestr, strcasestr) Index: /branches/rel-1-1/psLib/src/sys/sys.i =================================================================== --- /branches/rel-1-1/psLib/src/sys/sys.i (revision 12167) +++ /branches/rel-1-1/psLib/src/sys/sys.i (revision 12167) @@ -0,0 +1,11 @@ +/* sys headers */ + +%include "psAbort.h" +%include "psConfigure.h" +%include "psErrorCodes.h" +%include "psError.h" +%include "psLogMsg.h" +%include "psMemory.h" +%include "psString.h" +%include "psTrace.h" +%include "psType.h" Index: /branches/rel-1-1/psLib/src/types/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/types/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/types/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/types/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/types/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/types/Makefile.am (revision 12167) @@ -0,0 +1,34 @@ +#Makefile for types functions of psLib +# +noinst_LTLIBRARIES = libpslibtypes.la + +libpslibtypes_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(CFITSIO_CFLAGS) +libpslibtypes_la_SOURCES = \ + psArray.c \ + psBitSet.c \ + psHash.c \ + psList.c \ + psLookupTable.c \ + psMetadata.c \ + psMetadataConfig.c \ + psMetadataItemParse.c \ + psMetadataItemCompare.c \ + psPixels.c \ + psArguments.c + +EXTRA_DIST = types.i + +pkginclude_HEADERS = \ + psArray.h \ + psBitSet.h \ + psHash.h \ + psList.h \ + psLookupTable.h \ + psMetadata.h \ + psMetadataConfig.h \ + psMetadataItemParse.h \ + psMetadataItemCompare.h \ + psPixels.h \ + psArguments.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/types/parse_gcov-out.c =================================================================== --- /branches/rel-1-1/psLib/src/types/parse_gcov-out.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/parse_gcov-out.c (revision 12167) @@ -0,0 +1,149 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#define MAXSTR 10000 + +static char outStr[MAXSTR]; +static float average; +static int sum; + +void parseFile(FILE *in, const char *filename); + +int main(void) +{ + + FILE *output = NULL; + FILE *input = NULL; + average = 0.0; + sum = 0; + int N = 0; + + input = fopen("arg_gcov.out", "r"); + parseFile(input, "psArguments.c"); + fclose(input); + N++; + + input = fopen("arr_gcov.out", "r"); + parseFile(input, "psArray.c"); + fclose(input); + N++; + + input = fopen("bit_gcov.out", "r"); + parseFile(input, "psBitSet.c"); + fclose(input); + N++; + + input = fopen("hash_gcov.out", "r"); + parseFile(input, "psHash.c"); + fclose(input); + N++; + + input = fopen("list_gcov.out", "r"); + parseFile(input, "psList.c"); + fclose(input); + N++; + + input = fopen("look_gcov.out", "r"); + parseFile(input, "psLookupTable.c"); + fclose(input); + N++; + + input = fopen("md_gcov.out", "r"); + parseFile(input, "psMetadata.c"); + fclose(input); + N++; + + input = fopen("mdic_gcov.out", "r"); + parseFile(input, "psMetadataItemCompare.c"); + fclose(input); + N++; + + input = fopen("mdip_gcov.out", "r"); + parseFile(input, "psMetadataItemParse.c"); + fclose(input); + N++; + + input = fopen("mdc_gcov.out", "r"); + parseFile(input, "psMetadataConfig.c"); + fclose(input); + N++; + + input = fopen("pix_gcov.out", "r"); + parseFile(input, "psPixels.c"); + fclose(input); + N++; + + average = average / sum; + + output = fopen("Coverage-Report.txt", "w"); + fprintf(output, "\nTOTAL COVERAGE IN THE ../src/types/ DIRECTORY\n"); + fprintf(output, "\n%s", outStr); + fprintf(output, " -------------------------------" + "-------------------------------------\n"); + fprintf(output, " ---> Total = Lines executed:"); + fprintf(output, "%3.2f%% of %d\n\n", average, sum); + fclose(output); + return 0; +} + +void parseINT(const char *nums, float percent) +{ + sum += atoi(nums); + average += (float)((int)(percent * atoi(nums))); +} + +float parseDBL(const char *nums) +{ + char temp[7]; + int i = 0; + int j = 9; + float out = 0.0; + while (nums[j] != '%') { + temp[i] = nums[j]; + i++; + j++; + } + // average += (float)atof(temp); + out = (float)atof(temp); + return out; +} + +void parseFile(FILE *in, const char *filename) +{ + char currentStr[100]; + char searchStr[100]; + char out[250]; + sprintf(out, " >><< %-25s =", filename); + sprintf(searchStr, "'%s'", filename); + // printf("\n searchStr = %s\n", searchStr); + strcat(outStr, out); + int i; + float numLines = 0.0; + while ( fscanf(in, "%s", currentStr) != EOF) { + if ( strncmp(currentStr, searchStr, 99) == 0 ) { + for (i = 0; i < 4; i++) { + if (i == 1) { + fscanf(in, "%s", out); + numLines = parseDBL(out); + sprintf(currentStr, "%-16s", out); + } else if ( i == 3) { + fscanf(in, "%s", out); + parseINT(out, numLines); + sprintf(currentStr, "%s", out); + } else { + fscanf(in, "%s", currentStr); + } + strcat(outStr, " "); + strcat(outStr, currentStr); + } + continue; + } + } + strcat(outStr, "\n\n"); +} + Index: /branches/rel-1-1/psLib/src/types/profile_tap =================================================================== --- /branches/rel-1-1/psLib/src/types/profile_tap (revision 12167) +++ /branches/rel-1-1/psLib/src/types/profile_tap (revision 12167) @@ -0,0 +1,16 @@ + +gcov -f --object-file ./.libs/libpslibtypes_la-psArguments.o psArguments.c > arg_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psArray.o psArray.c > arr_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psBitSet.o psBitSet.c > bit_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psHash.o psHash.c > hash_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psList.o psList.c > list_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psLookupTable.o psLookupTable.c > look_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataConfig.o psMetadataConfig.c > mdc_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataItemCompare.o psMetadataItemCompare.c > mdic_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataItemParse.o psMetadataItemParse.c > mdip_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadata.o psMetadata.c > md_gcov.out +gcov -f --object-file ./.libs/libpslibtypes_la-psPixels.o psPixels.c > pix_gcov.out +gcc parse_gcov-out.c -o parse_gcov +./parse_gcov +rm *.out +more Coverage-Report.txt Index: /branches/rel-1-1/psLib/src/types/psArguments.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psArguments.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psArguments.c (revision 12167) @@ -0,0 +1,488 @@ +/** @file psArguments.h + * + * @brief Contains operations for parsing command line input arguments. + * + * @ingroup Arguments + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.20 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include + +#include "psArguments.h" +#include "fitsio.h" +#include "psMemory.h" +#include "psError.h" +#include "psAbort.h" + +#include "psLogMsg.h" +#include "psTrace.h" +#include "psAssert.h" + +#define NUM_SPACES 4 // Number of spaces between + +// Set verbosity level +int psArgumentVerbosity(int *argc, + char **argv) +{ + int logLevel = psLogGetLevel(); // Current logging level + PS_ASSERT_PTR_NON_NULL(argv, 2); + PS_ASSERT_PTR_NON_NULL(argc, 2); + int argnum = 0; // Argument number + + // set in order, so that -vvv overrides -vv overrides -v + if ( (argnum = psArgumentGet(*argc, argv, "-v")) ) { + psArgumentRemove(argnum, argc, argv); + logLevel = 3; + psLogSetLevel(logLevel); + } + if ( (argnum = psArgumentGet(*argc, argv, "-vv")) ) { + psArgumentRemove(argnum, argc, argv); + logLevel = 4; + psLogSetLevel(logLevel); + } + if ( (argnum = psArgumentGet(*argc, argv, "-vvv")) ) { + psArgumentRemove(argnum, argc, argv); + logLevel = 5; + psLogSetLevel(logLevel); + } + + if ( (argnum = psArgumentGet(*argc, argv, "-logfmt")) ) { + if (*argc < argnum + 2) { + psError(PS_ERR_IO, true, "-logfmt switch specified without a format."); + } else { + psArgumentRemove(argnum, argc, argv); + psLogSetFormat(argv[argnum]); // XXX EAM : this function should return an error if the log format is invalid + psArgumentRemove(argnum, argc, argv); + } + } + + // Now the trace stuff + // argument format is: -trace (facil) (level) + while ( (argnum = psArgumentGet(*argc, argv, "-trace")) ) { + if ( (*argc < argnum + 3) ) { + psError(PS_ERR_IO, true, "-trace switch specified without facility and level."); + return logLevel; + } + psArgumentRemove(argnum, argc, argv); + psTraceSetLevel(argv[argnum], atoi(argv[argnum+1])); // XXX: This function should return an error if the trace level is invalid + psArgumentRemove(argnum, argc, argv); + psArgumentRemove(argnum, argc, argv); + } + if ((argnum = psArgumentGet(*argc, argv, "-trace-levels"))) { + psTracePrintLevels(); + // exit(2); + return logLevel; + } + + return logLevel; +} + +// Find the location of the specified argument +int psArgumentGet(int argc, + char **argv, + const char *arg) +{ + PS_ASSERT_PTR_NON_NULL(argv, 0); + PS_ASSERT_PTR_NON_NULL(arg, 0); + if (strlen(arg) == 0) + return 0; + for (int i = 1; i < argc; i++) { + if (!strcmp(argv[i], arg)) + return i; + } + + return 0; +} + +// Remove the specified argument (by location) +bool psArgumentRemove(int argnum, + int *argc, + char **argv) +{ + PS_ASSERT_PTR_NON_NULL(argv, false); + PS_ASSERT_PTR_NON_NULL(argc, false); + if (argnum > 0) { + (*argc)--; + for (int i = argnum; i < *argc; i++) { + argv[i] = argv[i+1]; + } + argv[*argc] = NULL; + } else { + return false; + } + + return true; +} + + +#define ARG_READ_CASE(TYPE,FUNC) \ +case PS_TYPE_##TYPE: \ +item->data.TYPE = FUNC(argv[argnum]); \ +return psArgumentRemove(argnum, argc, argv); + +static bool argumentRead(psMetadataItem *item, // Item to read into + int argnum, // Argument number + int *argc, // Number of arguments in total + char **argv) // The arguments + +{ + switch(item->type) + { + ARG_READ_CASE(U8,atoi); + ARG_READ_CASE(U16,atoi); + ARG_READ_CASE(U32,atoi); + ARG_READ_CASE(U64,atoi); + ARG_READ_CASE(S8,atoi); + ARG_READ_CASE(S16,atoi); + ARG_READ_CASE(S32,atoi); + ARG_READ_CASE(S64,atoi); + ARG_READ_CASE(F32,atof); + ARG_READ_CASE(F64,atof); + case PS_DATA_BOOL: + // Turn option on; no optional argument to remove + item->data.B = true; + return true; + case PS_DATA_STRING: + psFree(item->data.V); + item->data.V = psStringCopy(argv[argnum]); + return psArgumentRemove(argnum, argc, argv); + default: + psError(PS_ERR_IO, true, "Argument type (%x) is not supported --- argument %s (%s) ignored\n", + item->type, item->name, item->comment); + return false; + } + + return true; +} + + +bool psArgumentParse(psMetadata *arguments, + int *argc, + char **argv) +{ + PS_ASSERT_PTR_NON_NULL(arguments, false); + PS_ASSERT_PTR_NON_NULL(argv, false); + PS_ASSERT_PTR_NON_NULL(argc, false); + if (*argc < 1) + return false; + // We need to do a bit of mucking around in order to preserve the arguments metadata until the last + // minute --- if there is a bad argument, we need to return the old "arguments", since they contain + // the default values, which we probably want to output in a "help" message (we don't want to print + // the changed values and have the user think that they are default values). + psMetadata *oldArgs = psMetadataCopy(NULL, arguments); // Copy of old arguments, in event of an error + psMetadata *multiFlag = psMetadataAlloc(); // Flag for which MULTI values have been read + + for (int i = 1; i < *argc; i++) { + psTrace("psLib.types", 7, "Looking at %s\n", argv[i]); + psMetadataItem *argItem = psMetadataLookup(arguments, argv[i]); + if (argItem) { + psArgumentRemove(i, argc, argv); // Remove the switch + + switch (argItem->type) { + case PS_DATA_METADATA: { + // -arg 1 2 3 + psMetadata *params = argItem->data.V; // The list of parameters + if (*argc < i + params->list->n) { + psError(PS_ERR_IO, true, "Not enough arguments for %s.\n", argItem->name); + // Remove the arguments --- they will be ignored + for (int j = i; j < *argc; j++) { + psArgumentRemove(i, argc, argv); + } + goto failed; + } + + psMetadataIterator *paramsIter = psMetadataIteratorAlloc(params, + PS_LIST_HEAD, NULL);// Iter + psMetadataItem *param = NULL; // Parameter from iteration + while ((param = psMetadataGetAndIncrement(paramsIter))) { + argumentRead(param, i, argc, argv); + } + psFree(paramsIter); + break; + } + case PS_DATA_METADATA_MULTI: { + // -arg 1 -arg 2 -arg 3 .... + psList *multi = argItem->data.V; // The MULTI list + psMetadataItem *template = psListGet(multi, PS_LIST_HEAD) + ; // The template item + psMetadataItem *newItem = psMetadataItemCopy(template) + ; // New item to add + argumentRead(newItem, i, argc, argv); + psMetadataAddItem(arguments, newItem, PS_LIST_TAIL, PS_META_DUPLICATE_OK); + psFree(newItem); // Drop reference + + // Remove the template + bool search = false; // Result of search + if (!psMetadataLookupBool(&search, multiFlag, argItem->name) || !search) { + // Chop the template off + psListRemove(multi, PS_LIST_HEAD); // Remove from MULTI (hash side) + psListRemoveData(arguments->list, template) + ; // Remove from list side + psMetadataAddBool(multiFlag, PS_LIST_HEAD, argItem->name, PS_META_REPLACE, + NULL, true); + } + break; + } + default: + // -arg 1 + if (argItem->type != PS_DATA_BOOL && *argc < i + 1) { + psError(PS_ERR_IO, true, "Required argument for %s is missing.\n", argItem->name); + goto failed; + } + argumentRead(argItem, i, argc, argv); + break; + } + i--; // We removed stuff + } else if (strncmp(argv[i], "-", 1) == 0 || strncmp(argv[i], "+", 1) == 0) { + // Someone's specified a bad option + psError(PS_ERR_IO, true, "Unknown option: %s\n", argv[i]); + goto failed; + } + } + + psFree(multiFlag); + psFree(oldArgs); // Didn't need these + return true; + +failed: + // We need to copy everything back + if (psListLength(arguments->list) > 0) { + while (psMetadataRemoveIndex(arguments, PS_LIST_TAIL)) + ; + } + psMetadataCopy(arguments, oldArgs); + psFree(multiFlag); + psFree(oldArgs); + return false; +} + + +#define LENGTH_CASE(TYPE) \ +case PS_TYPE_##TYPE: \ +return arg->data.TYPE == 0 ? 1 : \ + (arg->data.TYPE > 0 ? (int)log10f((float)arg->data.TYPE) + 1 : \ + (int)log10f(-(float)arg->data.TYPE) + 2); + +static int argLength(psMetadataItem *arg) +{ + switch (arg->type) { + // Only doing a representative set of types + LENGTH_CASE(U8); + LENGTH_CASE(U16); + LENGTH_CASE(U32); + LENGTH_CASE(U64); + LENGTH_CASE(S8); + LENGTH_CASE(S16); + LENGTH_CASE(S32); + LENGTH_CASE(S64); + case PS_DATA_F32: + return arg->data.F32 >= 0 ? 12 : 13; // -d.dddddde?dd + case PS_DATA_F64: + return arg->data.F64 >= 0 ? 12 : 13; // -d.dddddde?dd + case PS_DATA_BOOL: + return arg->data.B ? 4 : 5; + case PS_DATA_STRING: + return arg->data.V ? strlen(arg->data.V) : 0; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Argument type (%x) is not supported.\n", arg->type); + return 0; + // psAbort("Argument type (%x) is not supported.\n", arg->type); + } + + return 0; +} + + +#define PRINT_CASE(TYPE,FORMAT) \ +case PS_TYPE_##TYPE: \ +printf(FORMAT, item->data.TYPE); \ +break; + +// Print the value and comment for an argument item +static void printValueComment(psMetadataItem *item, // Argument item for which to print + const char *comment, // Comment to print + unsigned int numSpaces) // Number of spaces + +{ + int valueLength = 0; // Length of the value portion + printf("("); + if (item) { + // Print the value + switch (item->type) { + PRINT_CASE(U8, "%u"); + PRINT_CASE(U16, "%u"); + PRINT_CASE(U32, "%u"); + PRINT_CASE(U64, "%" PRIu64); + PRINT_CASE(S8, "%d"); + PRINT_CASE(S16, "%d"); + PRINT_CASE(S32, "%d"); + PRINT_CASE(S64, "%" PRId64); + PRINT_CASE(F32, "%.6e"); + PRINT_CASE(F64, "%.6e"); + case PS_DATA_BOOL: + if (item->data.B) { + printf("TRUE"); + } else { + printf("FALSE"); + } + break; + case PS_DATA_STRING: + if (item->data.V) { + printf("""%s""", item->data.str); + } + break; + default: + // psAbort("Argument type (%x) for %s is not supported.\n", + // item->type, item->name); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Argument type (%x) for %s is not supported.\n", item->type, item->name); + } + valueLength = argLength(item); + } + printf(")"); + + // Spaces for formatting + for (int i = valueLength; i < numSpaces; i++) { + printf(" "); + } + + // Print the comment + if (comment) { + printf("%s", comment); + } + printf("\n"); + + return; +} + +// Return the maximum length of the values +static void maxLength(int *maxName, // Maximum length of the name + int *maxValue, // Maximum length of the value + psMetadata *md) // Metadata for which to check the length + +{ + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item = NULL; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) + { + if (item->type == PS_DATA_METADATA) { + maxLength(maxName, maxValue, item->data.V); + } else { + int nameLength = strlen(item->name); // Length of the name + if (nameLength > *maxName) { + *maxName = nameLength; + } + int valueLength = argLength(item); // Length of the value + if (valueLength > *maxValue) { + *maxValue = valueLength; + } + } + } + psFree(iter); + return; +} + + +void psArgumentHelp(psMetadata *arguments) +{ + if (arguments == NULL) + return; + printf("Optional arguments, with default values:\n"); + int maxName = 4; // Maximum length of a name + int maxValue = 4; // Maximum length of a value + + // First pass to get the sizes + maxLength(&maxName, &maxValue, arguments); + + // Second pass to print + psMetadataIterator *argIter = psMetadataIteratorAlloc(arguments, PS_LIST_HEAD, NULL); + psMetadataItem *argItem = NULL; // Item from iterator + while ((argItem = psMetadataGetAndIncrement(argIter))) { + // Initial indent + for (int i = 0; i < NUM_SPACES; i++) { + printf(" "); + } + + // Print the name if required + printf("%s", argItem->name); + int position = strlen(argItem->name); // Number of spaces in + for (int i = position; i < maxName + NUM_SPACES; i++) { + printf(" "); + } + + // Check to see if it's a MULTI --- there are no default values for a MULTI + // -arg 1 -arg 2 -arg 3 ... + psMetadataItem *multiCheck = psMetadataLookup(arguments, argItem->name); // Item to check for MULTI + if (multiCheck->type == PS_DATA_METADATA_MULTI) { + bool first = true; // Is this the first one? + psListIterator* iter = psListIteratorAlloc(multiCheck->data.list,PS_LIST_HEAD,true); + psMetadataItem* listItem; + int count = 0; + // while ((listItem=(psMetadataItem*)psListGetAndIncrement(iter)) != NULL) { + while ((listItem=(psMetadataItem*)psListGetAndIncrement(iter)) != NULL) { + // for (int i = 0; i < NUM_SPACES; i++) { + // printf(" "); + // } + // printf("%s", listItem->name); + // int position = strlen(listItem->name); // Number of spaces in + // for (int i = position; i < maxName + NUM_SPACES; i++) { + // printf(" "); + // } + if (!first) { + for (int i = 0; i < maxName + 2*NUM_SPACES; i++) { + printf(" "); + } + } + printValueComment(listItem, listItem->comment, maxValue + NUM_SPACES); + first = false; + count++; + // continue; + } + psFree(iter); + while (count > 1) { + argItem = psMetadataGetAndIncrement(argIter); + count--; + } + continue; + } + + // -arg 1 2 3 + if (argItem->type == PS_DATA_METADATA) { + psMetadata *params = argItem->data.V; // The list of parameters + psMetadataIterator *paramsIter = psMetadataIteratorAlloc(params, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *paramItem = NULL; // Parameter, from iteration + bool first = true; // Is this the first one? + while ((paramItem = psMetadataGetAndIncrement(paramsIter))) { + if (!first) { + for (int i = 0; i < maxName + 2*NUM_SPACES; i++) { + printf(" "); + } + } + printValueComment(paramItem, paramItem->comment, maxValue + NUM_SPACES); + first = false; + } + psFree(paramsIter); + continue; + } + + // -arg 1 + printValueComment(argItem, argItem->comment, maxValue + NUM_SPACES); + } + + psFree(argIter); +} + Index: /branches/rel-1-1/psLib/src/types/psArguments.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psArguments.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psArguments.h (revision 12167) @@ -0,0 +1,75 @@ +/** @file psArguments.h + * + * @brief Contains operations for parsing command line input arguments. + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ARGUMENTS_H +#define PS_ARGUMENTS_H + +/// @addtogroup SysUtils +/// @{ + +#include "psMetadata.h" + +/** Implements the various verbosity controls. + * + * Arguments shall be removed from the argument list as they are processed. + * + * @return int: The resultant logging level. + */ +int psArgumentVerbosity( + int *argc, ///< number of arguments + char **argv ///< the argument list +); + +/** Checks for an argument and returns its index position if found. + * + * @return int: The index of the element in the argument list, otherwise 0. + */ +int psArgumentGet( + int argc, ///< number of arguments + char **argv, ///< the argument list + const char *arg ///< the specified argument to match +); + +/** Removes from the argument list the argument whose index is argnum. + * + * The number of entries in the argument list shall be decremented. + * + * @return bool: True if the argnum is in the argument list, otherwise false. + */ +bool psArgumentRemove( + int argnum, ///< the argument to remove + int *argc, ///< number of arguments + char **argv ///< the argument list +); + +/** Parses the command line arguments into a metadata container of arguments. + * + * The input arguments shall contain the list of possible arguments as the keywords providing + * the default values. As matching arguments are found on the command line, the values shall + * be read into the arguments metadata, with the appropriate type. The arguments and their + * values shall be removed from the list of command line arguments as they are processed. + * + * @return bool: False if any argument was encountered that is not present in arguments. + */ +bool psArgumentParse( + psMetadata *arguments, ///< metadata container for arguments + int *argc, ///< number of arguments + char **argv ///< the argument list +); + +/** Prints to stdout a guide to the command-line arguments. */ +void psArgumentHelp( + psMetadata *arguments ///< metadata container for arguments +); + +/// @} +#endif // #ifndef PS_ARGUMENTS_H Index: /branches/rel-1-1/psLib/src/types/psArray.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psArray.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psArray.c (revision 12167) @@ -0,0 +1,317 @@ + +/** @file psArray.c + * + * @brief Contains support for basic vector types + * + * This file defines the basic type for a vector struct and functions useful + * in manupulating vectors. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.59 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 03:34:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/******************************************************************************/ + +/* INCLUDE FILES */ + +/******************************************************************************/ +#include // for qsort, etc. +#include + +#include "psMemory.h" +#include "psError.h" +#include "psArray.h" +#include "psLogMsg.h" +#include "psAssert.h" + + + +/***************************************************************************** + FUNCTION IMPLEMENTATION - LOCAL + *****************************************************************************/ +static void arrayFree(psArray* psArr); + +static void arrayFree(psArray* psArr) +{ + psArrayElementsFree(psArr); + + psFree(psArr->data); +} + +bool psMemCheckArray(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)arrayFree ); +} + +// Allocate an array, deliberately leave size unset. +static psArray *arrayAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc) +{ + if (nalloc < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Can't allocate a psArray of negative size."); + return NULL; + } + + // Create vector struct + psArray *array = (psArray*)psAlloc(sizeof(psArray)); + psMemSetDeallocator(array, (psFreeFunc)arrayFree); + + P_PSARRAY_SET_NALLOC(array, nalloc); + // Create vector data array + array->data = psAlloc(nalloc * sizeof(psPtr)); + memset(array->data, 0, sizeof(void*) * nalloc); //set the initial values of data to NULL + + return array; +} + +/***************************************************************************** + FUNCTION IMPLEMENTATION - PUBLIC + *****************************************************************************/ +psArray* p_psArrayAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc) +{ + psArray *array = arrayAlloc(file, lineno, func, nalloc); + if (!array) { + return NULL; + } + array->n = nalloc; + return array; +} + +psArray* p_psArrayAllocEmpty(const char *file, + unsigned int lineno, + const char *func, + long nalloc) +{ + psArray *array = arrayAlloc(file, lineno, func, nalloc); + if (!array) { + return NULL; + } + array->n = 0; + return array; +} + +psArray* p_psArrayRealloc(const char *file, + unsigned int lineno, + const char *func, + psArray* in, + long nalloc) +{ + if (nalloc < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Can't reallocate a psArray to negative size."); + return in; + } + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL,true, + _("psArrayRealloc must be given a non-NULL psArray to resize.")); + return NULL; + } else if (in->nalloc != nalloc) { // No need to realloc to same size + if (nalloc < in->n) { + for (psS32 i = nalloc; i < in->n; i++) { // For reduction in vector size + psFree(in->data[i]); + } + in->n = nalloc; + } + // Realloc after decrementation to avoid accessing freed array elements + long n = in->n; + in->data = p_psRealloc(file, lineno, func, in->data, nalloc * sizeof(psPtr)); + P_PSARRAY_SET_NALLOC(in,nalloc); + for (long m = n; m < nalloc; m++) { //if array is grown, set grown data to NULL + in->data[m] = NULL; + } + } + + return in; +} + +psArray* psArrayAdd(psArray* array, + long delta, + psPtr data) +{ + if (array == NULL) { + int d = (delta > 0) ? delta : 10; // as spec'ed in SDRS. + array = psArrayAlloc(d); + array->n = 0; + } + + int n = array->n; + + if (n >= array->nalloc) { + // array needs to be expanded to make room for more elements + int d = (delta > 0) ? delta : 10; // as spec'ed in SDRS. + array = psArrayRealloc(array, n+d); + } + + // add the element to the end of the array. + array->data[n] = psMemIncrRefCounter(data); + array->n = n+1; + + return array; +} + +bool psArrayRemoveData(psArray* array, + const psPtr data) +{ + bool success = false; + + if (array == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psArray can not be NULL.")); + return false; + } + + psS32 n = array->n; + psPtr* psArrData = array->data; + for (psS32 i = n-1; i >= 0; i--) { + if (psArrData[i] == data) { + memmove(&array->data[i],&array->data[i+1],(n-i-1)*sizeof(psPtr)); + psFree(data); // free the removed item (see Bug #449) + n--; + success = true; + } + } + array->n = n; // reset the array size to indicate the removed item(s) + + return success; +} + +bool psArrayRemoveIndex(psArray* array, + long index) +{ + PS_ASSERT_PTR_NON_NULL(array, false); + + if (index < 0 || index >= array->n) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("index > then the number of elements in the array.")); + return false; + } + + long i = index; + long n = array->n; + psFree(array->data[i]); + memmove(&array->data[i], &array->data[i + 1], (n - i - 1) * sizeof(psPtr)); + array->n--; // reset the array size to indicate the removed item + + return true; +} + +void psArrayElementsFree(psArray* array) +{ + if (array == NULL) { + return; + } + + for (long i = 0; i < array->n; i++) { + psFree(array->data[i]); + array->data[i] = NULL; + } + + array->n = 0; +} + +psArray* psArraySort(psArray* array, + psComparePtrFunc func) +{ + if (array == NULL) { + return NULL; + } + + qsort(array->data, array->n, sizeof(psPtr), (int (*)(const void* , const void*))func); + + return array; +} + +// Set an element in the array. +bool psArraySet(psArray* array, ///< input array to set element in + long position, ///< the element position to set + psPtr data) ///< the value to set it to +{ + if (array == NULL) + { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psArray can not be NULL.")); + return false; + } + + if (position > array->n) + { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified position, %ld, is greater than n+1 of the array, %ld.", + position, array->n); + return false; + } + + if (position < 0) + position += array->n; + if (position < 0) + { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + return false; + } + + if (position == array->n) + { + if (position >= array->nalloc) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified position, %ld, is greater than the allocated size of the array, %ld."), + position, array->nalloc); + return false; + } + array->n++; + } + psFree(array->data[position]); + array->data[position] = psMemIncrRefCounter(data); + + return true; +} + +// Get an element in the array. +psPtr psArrayGet(const psArray* array, + long position ) +{ + if (array == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psArray can not be NULL.")); + return NULL; + } + + if (position >= array->n) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified position, %ld, is greater than n+1 of the array, %ld.", + position, array->n); + return NULL; + } + if (position < 0) + position += array->n; + if (position < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + return NULL; + } + return (array->data[position]); +} + +long psArrayLength(const psArray *array) +{ + if ( !psMemCheckArray((psArray*)array) ) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Error: Specified array is not a valid psArray \n"); + return -1; + } + return (array->n); +} + Index: /branches/rel-1-1/psLib/src/types/psArray.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psArray.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psArray.h (revision 12167) @@ -0,0 +1,277 @@ +/** @file psArray.h + * + * @brief Contains basic array definitions and operations + * + * This file defines the basic type for a array struct and functions useful + * in manupulating arrays. + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.47 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 03:34:09 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_ARRAY_H +#define PS_ARRAY_H + +#include "psType.h" +#include "psCompare.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/** An array to support primitive types. + * + * Struct for maintaining an array of frequently used primitive types. + * + */ +typedef struct +{ + long n; ///< Number of elements in use. + const long nalloc; ///< Total number of elements available. + psPtr* data; ///< An Array of pointer elements + void *lock; ///< Optional lock for thread safety +} +psArray; + +#define P_PSARRAY_SET_NALLOC(vec,n) *(long*)&vec->nalloc = n + +/*****************************************************************************/ + +/* FUNCTION PROTOTYPES */ + +/*****************************************************************************/ + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psArray structure, false + * otherwise. + */ +bool psMemCheckArray( + psPtr ptr ///< the pointer whose type to check +) +; + + +/** Allocate an array, set the length to the number of allocated elements + * + * Uses psLib memory allocation functions to create an array collection of + * data + * + * @return psArray* : Pointer to psArray. + * + */ +#ifdef DOXYGEN +psArray* psArrayAlloc( + long nalloc ///< Total number of elements to make available. +); +#else // ifdef DOXYGEN +psArray* p_psArrayAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc ///< Total number of elements to make available. +); +#define psArrayAlloc(nalloc) \ + p_psArrayAlloc(__FILE__, __LINE__, __func__, nalloc) +#endif // ifdef DOXYGEN + + +/** Allocate an array, set the length to zero. + * + * Uses psLib memory allocation functions to create an array collection of + * data + * + * @return psArray* : Pointer to psArray. + * + */ +#ifdef DOXYGEN +psArray* psArrayAllocEmpty( + long nalloc ///< Total number of elements to make available. +); +#else // ifdef DOXYGEN +psArray* p_psArrayAllocEmpty( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc ///< Total number of elements to make available. +); +#define psArrayAllocEmpty(nalloc) \ + p_psArrayAllocEmpty(__FILE__, __LINE__, __func__, nalloc) +#endif // ifdef DOXYGEN + + +/** Reallocate an array. + * + * Uses psLib memory allocation functions to reallocate an array collection + * of data. + * + * @return psArray* : Pointer to psArray. + * + */ +#ifdef DOXYGEN +psArray* psArrayRealloc( + psArray* array, ///< array to reallocate. + long nalloc ///< Total number of elements to make available. +); +#else // ifdef DOXYGEN +psArray* p_psArrayRealloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psArray* array, ///< array to reallocate. + long nalloc ///< Total number of elements to make available. +); +#define psArrayRealloc(array, nalloc) \ + p_psArrayRealloc(__FILE__, __LINE__, __func__, array, nalloc) +#endif // ifdef DOXYGEN + + +/** Add an element to the end the array, expanding the array storage if + * necessary. + * + * @return psArray* The array with the element added + */ +psArray* psArrayAdd( + psArray* array, ///< array to operate on + long delta, ///< the amount to expand array, if necessary. If less than one, 10 will be used. + psPtr data ///< the data pointer to add to psArray +); + + +/** Remove an element from the array by it's pointer + * + * Finds and removes the specified data pointer from the list. + * + * @return bool: TRUE if the specified data pointer was found and removed, + * otherwise FALSE. + * + */ +bool psArrayRemoveData( + psArray* array, ///< array to operate on + const psPtr data ///< the data pointer to remove from psArray +); + + +/** Remove an element from the array + * + * Finds and removes the elements as the specified position + * + * @return bool: TRUE if the specified data pointer was found and removed, + * otherwise FALSE. + * + */ +bool psArrayRemoveIndex( + psArray* array, ///< array to operate on + long index ///< the element to remove +); + + +/** Deallocate/Dereference elements of an array. + * + * Uses psLib memory allocation functions to deallocate/dereference elements + * of a array of void pointers. The array psArr is not freed, and its elements + * will all be set to NULL. Additionaly, the array size (n) is set to zero. + * + */ +void psArrayElementsFree( + psArray* array ///< Void pointer array to destroy. +); + + +/** Sort the array according to an external compare function. + * + * Sorts an array via the specification of a comparison function + * to specify how the objects on the array should be sorted. + * + * The comparison function must return an integer less than, equal to, or + * greater than zero if the first argument is considered to be respectively + * less than, equal to, or greater than the second. + * + * If two members compare as equal, their order in the sorted array is + * undefined. + * + * @return psArray* The sorted array. + */ +psArray* psArraySort( + psArray* array, ///< input array to sort. + psComparePtrFunc func ///< the compare function +); + + +/** Set an element in the array. If the current element is non-NULL, the old + * element is freed. + * + * @return bool TRUE if the element was set successfully, otherwise FALSE + */ +bool psArraySet( + psArray* array, ///< input array to set element in + long position, ///< the element position to set + psPtr data ///< the value to set it to +); + + +/** Get an element from the array. + * + * @return void* the element at given position. + */ +psPtr psArrayGet( + const psArray* array, ///< input array to get element from + long position ///< the element position to get +); + + +/** Get the number of elements in use from a specified psArray. (array.n) + * + * @return long: The number of elements in use. + */ +long psArrayLength( + const psArray *array ///< input psArray +); + + +// Some assertions + +#define PS_ASSERT_ARRAY_NON_NULL(NAME, RETURNVAL) PS_ASSERT_GENERAL_ARRAY_NON_NULL(NAME, return RETURNVAL) +#define PS_ASSERT_GENERAL_ARRAY_NON_NULL(NAME, CLEANUP) \ +if ((NAME) == NULL || (NAME)->data == NULL) { \ + psError(PS_ERR_BAD_PARAMETER_NULL, true, \ + "Unallowable operation: psArray %s or its data is NULL.", \ + #NAME); \ + CLEANUP; \ +} \ + +#define PS_ASSERT_ARRAY_NON_EMPTY(NAME, RETURNVAL) PS_ASSERT_GENERAL_ARRAY_NON_EMPTY(NAME, return RETURNVAL) +#define PS_ASSERT_GENERAL_ARRAY_NON_EMPTY(NAME, CLEANUP) \ +if ((NAME)->n < 1) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "Unallowable operation: psArray %s has no elements.", \ + #NAME); \ + CLEANUP; \ +} \ + +#define PS_ASSERT_ARRAYS_SIZE_EQUAL(ARRAY1, ARRAY2, RVAL) \ +if ((ARRAY1)->n != (ARRAY2)->n) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "psArray %s has size %ld, psArray %s has size %ld.", \ + #ARRAY1, (ARRAY1)->n, #ARRAY2, (ARRAY2)->n); \ + return(RVAL); \ +} + +#define PS_ASSERT_ARRAY_SIZE(ARRAY, SIZE, RVAL) \ +if ((ARRAY)->n != (SIZE)) { \ + psError(PS_ERR_BAD_PARAMETER_SIZE, true, \ + "psArray %s has size %ld instead of expected size %ld.", \ + #ARRAY, (ARRAY)->n, SIZE); \ + return RVAL; \ +} + +/// @} +#endif // #ifndef PS_ARRAY_H Index: /branches/rel-1-1/psLib/src/types/psBitSet.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psBitSet.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psBitSet.c (revision 12167) @@ -0,0 +1,303 @@ +/** @file psBitSet.c + * + * @brief Creates an array of bytes of arbitrary length for storing individual bits. + * + * Bit masks are useful tools for toggling various flags and options. This set of functions module provides + * a mechanism to create an array of bits of arbitrary length and manipulate them with basic binary + * operations. A print function is also provided to display the entire set of bits in binary format as a + * string. + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.41 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:01:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include + +#include "psBitSet.h" +#include "psMemory.h" +#include "psError.h" +#include "psAbort.h" +#include "psString.h" +#include "psAssert.h" + + + +enum { + UNKNOWN_OP, + AND_OP, + OR_OP, + XOR_OP, + NOT_OP +}; + +static void bitSetFree(psBitSet* inBitSet); + +/** Private function to create a mask. + * + * Creates an eight bit mask with the given bit set. All other bits in the byte are zero. The input bit uses + * zero-based indexing, and is the cumulitive index within the array, not the localized byte's bit position. + * + * @return char*: Pointer to byte in which bit is contained. + */ +static char mask(psS32 bit) +{ + char mask = (char)0x01; + + // Ignore splint warning about negative bit shifts + /* @i@ */ + mask = mask << (bit % 8); + + return mask; +} + +static void bitSetFree(psBitSet* inBitSet) +{ + psFree(inBitSet->bits); +} + +bool psMemCheckBitSet(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)bitSetFree ); +} + + +psBitSet* p_psBitSetAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc) +{ + if (nalloc < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("The number of bit in a psBitSet (%ld) must be greater than zero."), + nalloc); + return NULL; + } + + psS32 numBytes = 0; + psBitSet* newObj = NULL; + + numBytes = ceil(nalloc / 8.0); + newObj = p_psAlloc(file, lineno, func, sizeof(psBitSet)); + psMemSetDeallocator(newObj, (psFreeFunc) bitSetFree); + newObj->n = numBytes; + + // Ignore splint warning about releasing pointer members, since they've not been allocated yet + /* @i@ */ + newObj->bits = psAlloc(sizeof(char) * numBytes); + + memset(newObj->bits, 0, numBytes); + + return newObj; +} + + +bool psBitSetSet(psBitSet* bitSet, + long bit) +{ + unsigned char *byte = NULL; + + if (bitSet == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psBitSet.")); + return false; + } else if ( (bit < 0) || + (bit > bitSet->n * 8 - 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("The specified bit position (%ld) is invalid. Position must be between 0 and %ld."), + bit, bitSet->n * 8 - 1); + return false; + } + // Variable byte is the byte in the array that contains the bit to be set + byte = bitSet->bits + bit / 8; + *byte |= mask(bit); + + return true; +} + +bool psBitSetClear(psBitSet* bitSet, + long bit) +{ + unsigned char *byte = NULL; + + if (bitSet == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psBitSet.")); + return false; + } else if ( (bit < 0) || + (bit > bitSet->n * 8 - 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("The specified bit position (%ld) is invalid. Position must be between 0 and %ld."), + bit, bitSet->n * 8 - 1); + return false; + } + // Variable byte is the byte in the array that contains the bit to be set + byte = bitSet->bits + bit / 8; + *byte &= ! mask(bit); + + return true; +} + +bool psBitSetTest(const psBitSet* bitSet, + long bit) +{ + unsigned char *byte = NULL; + + if (bitSet == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Can not operate on a NULL psBitSet.")); + return false; + } else if ( (bit < 0) || + (bit > bitSet->n * 8 - 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("The specified bit position (%ld) is invalid. Position must be between 0 and %ld."), + bit,bitSet->n * 8 - 1); + return false; + } + + // Variable byte is the byte in the array that contains the bit to be tested + byte = bitSet->bits + bit / 8; + return ((*byte & mask(bit)) != 0); +} + +psBitSet* psBitSetOp(psBitSet* outBitSet, + const psBitSet* inBitSet1, + const char *operator, + const psBitSet* inBitSet2) +{ + if (inBitSet1 == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("First psBitSet operand can not be NULL.")); + psFree(outBitSet); + return NULL; + } + if (operator == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified operator is NULL. Must specify desired operator.")); + psFree(outBitSet); + return NULL; + } + psS32 i = 0; + psS32 n = 0; + unsigned char* outBits = NULL; + unsigned char* inBits1 = NULL; + unsigned char* inBits2 = NULL; + psS32 op = UNKNOWN_OP; + + inBits1 = inBitSet1->bits; + + + // parse the operator + if (strcmp(operator,"AND")==0) { + op = AND_OP; + } else if (strcmp(operator,"OR")==0) { + op = OR_OP; + } else if (strcmp(operator,"XOR")==0) { + op = XOR_OP; + } else if (strcmp(operator,"NOT")==0) { + op = NOT_OP; + } else { + psFree(outBitSet); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified operator, %s, is invalid. Valid operators are AND, OR, and XOR."), + operator); + return NULL; + } + + if (op != NOT_OP) { + if (inBitSet2 == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Second psBitSet operand can not be NULL.")); + psFree(outBitSet); + return NULL; + } + + if (inBitSet1->n != inBitSet2->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("The psBitSet operand must be the same size.")); + psFree(outBitSet); + return NULL; + } + inBits2 = inBitSet2->bits; + } + + if (outBitSet == NULL) { + outBitSet = psBitSetAlloc(inBitSet1->n*8); + } else if (outBitSet->n != inBitSet1->n) { + outBitSet->n = inBitSet1->n; + outBitSet->bits = psRealloc(outBitSet->bits, inBitSet1->n); + } + + n = outBitSet->n; + outBits = outBitSet->bits; + + switch (op) { + case AND_OP: + for (i = 0; i < n; i++) { + outBits[i] = inBits1[i] & inBits2[i]; + } + break; + case OR_OP: + for (i = 0; i < n; i++) { + outBits[i] = inBits1[i] | inBits2[i]; + } + break; + case XOR_OP: + for (i = 0; i < n; i++) { + outBits[i] = inBits1[i] ^ inBits2[i]; + } + break; + case NOT_OP: + default: + for (i = 0; i < n; i++) { + outBits[i] = ~inBits1[i]; + } + break; + } + + return outBitSet; +} + +psBitSet* psBitSetNot(psBitSet* outBitSet, + const psBitSet* inBitSet) +{ + if (inBitSet == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Operand can not be NULL.")); + psFree(outBitSet); + return NULL; + } + + outBitSet = psBitSetOp(outBitSet,inBitSet,"NOT",NULL); + + return outBitSet; +} + +psString psBitSetToString(const psBitSet* bitSet) +{ + PS_ASSERT_PTR_NON_NULL(bitSet, NULL); + psS32 i = 0; + psS32 numBits = bitSet->n * 8; + // char *outString = psAlloc((size_t) numBits + 1); + psString outString = psStringAlloc(numBits + 1); + + for (i = 0; i < numBits; i++) { + outString[numBits - i - 1] = psBitSetTest(bitSet, i) ? '1' : '0'; + } + + outString[numBits] = 0; + + return outString; +} Index: /branches/rel-1-1/psLib/src/types/psBitSet.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psBitSet.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psBitSet.h (revision 12167) @@ -0,0 +1,174 @@ +/** @file psBitSet.h + * + * @brief Creates an array of bytes of arbitrary length for storing individual bits. + * + * Bit masks are useful tools for toggling various flags and options. This set of functions module provides + * a mechanism to create an array of bits of arbitrary length and manipulate them with basic binary + * operations. A print function is also provided to display the entire set of bits in binary format as a + * string. + * + * @author PAP, EAM, IfA + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.30 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:01:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PSBITSET_H +#define PSBITSET_H + +#include "psType.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/******************************************************************************/ +/* TYPE DEFINITIONS */ +/******************************************************************************/ + +/** Struct containing array of bytes to hold bit data and corresponding array length. + * + * The bits in the struct are assembled in as an array of bytes with eight bits per + * byte. The bits are arranged with the LSB in first (right most) position of the + * first array element. + */ +typedef struct +{ + long n; ///< Number of bytes in the array + psU8 *bits; ///< Aray of bytes holding bits + void *lock; ///< Optional lock for thread safety +} +psBitSet; + +/*****************************************************************************/ +/* FUNCTION PROTOTYPES */ +/*****************************************************************************/ + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psBitSet structure, false otherwise. + */ +bool psMemCheckBitSet( + psPtr ptr ///< the pointer whose type to check +); + + +/** Allocate a psBitSet. + * + * Create a psBitSet with the number of bits specified by the user. All bits + * are set to zero upon allocation. + * + * @return psBitSet* : Pointer to struct containing array of bits and size of array. + */ +#ifdef DOXYGEN +psBitSet* psBitSetAlloc( + long nalloc ///< Number of bits in psBitSet array +); +#else // ifdef DOXYGEN +psBitSet* p_psBitSetAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc ///< Number of bits in psBitSet array +); +#define psBitSetAlloc(nalloc) \ + p_psBitSetAlloc(__FILE__, __LINE__, __func__, nalloc) +#endif // ifdef DOXYGEN + + + + +/** Set a bit. + * + * Sets a bit at a given bit location. The bit is set based on a zero index + * with the first bit set in the zero bit slot of the zero element of the byte + * array. As an example, setting bit 3 in an array with two elements would + * result in an psBitSet that looks like 00000000 00001000. + * + * @return bool : Successful operation? + */ +bool psBitSetSet( + psBitSet* bitSet, ///< Pointer to psBitSet to be set. + long bit ///< Bit to be set. +); + + +/** Clear a bit. + * + * Clear a bit at a given bit location. The bit is cleared based on a zero + * index with the first bit set in the zero bit slot of the zero element of + * the byte array. + * + * @return bool : Successful operation? + */ +bool psBitSetClear( + psBitSet* bitSet, ///< Pointer to psBitSet to be cleared. + long bit ///< Bit to be cleared. +); + + +/** Test the value of a bit. + * + * Prints the value of a bit at a given bit location, either one or zero. The + * resulting bit is based on a zero index format with the first bit set in the + * zero bit slot of the zero element of the byte array. As an example, + * testing bit 3 in a psBitSet with two bytes that looks like 00000000 + * 00001000 would return a value of one, since that is the value that was set. + * + * @return bool: True if successful, otherwise false + */ +bool psBitSetTest( + const psBitSet* bitSet, ///< Pointer psBitSet to be tested. + long bit ///< Bit to be tested. +); + + +/** Perform a binary operation on two psBitSets + * + * Perform an AND, OR, or XOR on two psBitSets. If the BitMasks are not the + * same size, the operation will not be performed and an error message will be + * logged. + * + * @return psBitSet* : Pointer to struct containing result of binary operation. + */ +psBitSet* psBitSetOp( + psBitSet* outBitSet, ///< Resulting psBitSet from binary operation + const psBitSet* inBitSet1, ///< First psBitSet on which to operate + const char *operator, ///< Bit operation + const psBitSet* inBitSet2 ///< Second psBitSet on which to operate +); + + +/** Perform a not operation on a psBitSet + * + * Toggles bits in a psBitset. All zero bits are set to one and all one bits + * are set to zero. + * + * @return psBitSet* : Pointer to struct containing result of operation. + */ +psBitSet* psBitSetNot( + psBitSet* outBitSet, ///< Resulting psBitSet from operation + const psBitSet* inBitSet ///< Input psBitSet +); + + +/** Convert the psBitSet to a string of ones and zeros. + * + * Converts the contents of a psBitSet to a string representation of its + * binary form of ones and zeros. The LSB is the right-most chracter. Each set + * of eight characters represents one byte. + * + * @return psString: Pointer to character array containing string data. + */ +psString psBitSetToString( + const psBitSet* bitSet ///< psBitSet to convert +); + + +/// @} +#endif // #ifndef PSBITSET_H Index: /branches/rel-1-1/psLib/src/types/psHash.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psHash.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psHash.c (revision 12167) @@ -0,0 +1,456 @@ + +/** @file psHash.c +* +* @brief Contains support for basic hashing functions. +* +* This file will hold the functions for defining a hash table with arbitrary +* data types, allocating/deallocating that hash table, adding and removing +* data from that hash table, and listing all keys defined in the hash table. +* +* @author Robert Lupton, Princeton University +* @author Robert DeSonia, MHPCC +* @author GLG, MHPCC +* +* @version $Revision: 1.38 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 21:44:00 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include + +#include "psHash.h" +#include "psMemory.h" +#include "psString.h" +#include "psTrace.h" +#include "psError.h" +#include "psAssert.h" + + + +static psHashBucket* hashBucketAlloc(const char *key, psPtr data, psHashBucket* next); +static void hashBucketFree(psHashBucket* bucket); +static psPtr doHashWork(psHash* table, const char *key, psPtr data, bool remove + ); +static void hashFree(psHash* table); + +/****************************************************************************** +psHashKeyList(table): this function creates a linked list with an entry in +that list for every key in the hash table. +Inputs: + table: a hash table +Return; + The linked list + *****************************************************************************/ +psList* psHashKeyList(const psHash* hash) +{ + PS_ASSERT_PTR_NON_NULL(hash, NULL); + psS32 i = 0; // Loop index variable + psList* myLinkList = NULL; // The output data structure + psHashBucket* ptr = NULL; // Used to step thru linked list. + + // Create the linked list + myLinkList = psListAlloc(NULL); + + // Loop through every bucket in the hash table. If that bucket is not + // NULL, then add the bucket's key to the linked list. + for (i = 0; i < hash->n; i++) { + if (hash->buckets[i] != NULL) { + // Since a bucket contains a linked list of keys/data, we must + // step trough each key in that linked list: + + ptr = hash->buckets[i]; + while (ptr != NULL) { + psListAdd(myLinkList, PS_LIST_HEAD, ptr->key); + ptr = ptr->next; + } + } + } + + // Return the linked list + return (myLinkList); +} + +/****************************************************************************** +hashBucketAlloc(key, data, next): This procedure creates a new hash bucket +with the specified key, data, and next. +Inputs: + key: the new bucket's key pointer + data: the new bucket's data pointer + next: the new bucket's key pointer +Return: + the new hash bucket. + *****************************************************************************/ +static psHashBucket* hashBucketAlloc(const char *key, + psPtr data, + psHashBucket* next) +{ + // Allocate memory for the new hash bucket. + psHashBucket* bucket = psAlloc(sizeof(psHashBucket)); + + psMemSetDeallocator(bucket, (psFreeFunc) hashBucketFree); + + // Initialize the bucket. + bucket->key = psStringCopy(key); + + //XXX: Since this function is static and only called by doHashWork, + //data can never be NULL here. + // if (data == NULL) { + // NOTE: Should we flag a warning message? + // bucket->data = NULL; + // } else { + bucket->data = psMemIncrRefCounter(data); + // } + + bucket->next = next; + + return bucket; +} + +/****************************************************************************** +hashBucketFree(bucket): This procedure deallocates the specified +hash bucket. +Inputs: + bucket: the hash bucket to be freed. +Return: + NONE + *****************************************************************************/ +static void hashBucketFree(psHashBucket* bucket) +{ + psFree(bucket->key); + psFree(bucket->data); +} + +/****************************************************************************** +psHashAlloc(n): this procedure creates a new hash table with the +specified number of buckets. +Inputs: + n: initial number of buckets +Return: + The new hash table. + *****************************************************************************/ +psHash* p_psHashAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc) // initial number of buckets +{ + if (nalloc < 0) + { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Can't allocate a psHash of negative size."); + return NULL; + } + psS32 i = 0; // loop index variable + + // Create the new hash table. + psHash* table = p_psAlloc(file, lineno, func, sizeof(psHash)); + + psMemSetDeallocator(table, (psFreeFunc) hashFree); + + // Allocate memory for the buckets. + table->buckets = psAlloc(nalloc * sizeof(psHashBucket* )); + table->n = nalloc; + + psTrace("psLib.types", 1, "Creating %ld-element hash table\n", nalloc); + + // Initialize all buckets to NULL. + for (i = 0; i < nalloc; i++) + { + table->buckets[i] = NULL; + } + + // Return the new hash table. + return table; +} + + +bool psMemCheckHash(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)hashFree ); +} + + +/****************************************************************************** +hashFree(table): This procedure deallocates the specified hash +table. It loops through each bucket, and calls hashBucketFree() on that +bucket. + +Inputs: + table: a hash table +Return: + NONE + *****************************************************************************/ +static void hashFree(psHash* table) +{ + psS32 i = 0; // Loop index variable. + + // Loop through each bucket in the hash table. If that bucket is not + // NULL, then free the bucket via a function call to hashBucketFree(); + for (i = 0; i < table->n; i++) { + + // A bucket is composed of a linked list of buckets. + while (table->buckets[i] != NULL) { + psHashBucket* bucket = table->buckets[i]; + table->buckets[i] = bucket->next; + psFree(bucket); + } + } + + // Free the bucket structure, then the hash table. + psFree(table->buckets); +} + +/****************************************************************************** +doHashWork(table, key, data, remove): This is an internal +procedure which does the bulk of the work in using the hash table. Depending +upon the input parameters, it will either insert a new key/data into the hash +table, retrieve the data for a specified key, or remove a key/data item. If +we try to insert a key that already exists in the hash table, then we deallocate +the existing data/key item. +Inputs: + table: a hash table + key: the key to insert, retrieve, or remove. Must not be NULL. + data: the data to insert, if not NULL + remove: set to non-zero if the key/data should be removed from the table. +Return: + NONE + +NOTE: consider removing this private function and simply putting the code +into the psHashInsert(), psHashLookup(), and psHashRemove(). Why? Because +there is little common code between those functions. + *****************************************************************************/ +static psPtr doHashWork(psHash* table, + const char *key, + psPtr data, + bool remove + ) +{ + psS64 hash = 1; // This will contain an integer value + + // "hashed" from the key. + char *tmpchar = NULL; // Used in computing the hash function. + psHashBucket* ptr = NULL; // Used to retrieve the hash bucket. + psHashBucket* optr = NULL; // "original pointer": used to step + + // thru the linked list for a bucket. + + // The following condition should never be true, since this is a private + // function, but I'm checking it anyway since future coders might change + // the way this procedure is called. + /* if ((table == NULL) || (key == NULL)) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Input key can not be NULL.")); + return NULL; + } + */ + // NOTE: This is the originally supplied hash function. + // for (psS32 i = 0, len = strlen(key); i < len; i++) { + // hash = (hash << 1) ^ key[i]; + // } + // hash &= (table->n - 1); + + // This hash algorithm is from Sedgewick. NOTE: must reread to ensure that + // the size of the hash table is not required to be a prime number. + if (table->n <= 0) + return NULL; + tmpchar = (char *)key; + for (hash = 0; *tmpchar != '\0'; tmpchar++) { + hash = (64 * hash + *tmpchar) % (table->n); + } + + // NOTE: This should not be necessary, but for now, I'm checking bounds + // anyway. + /* if ((hash < 0) || (hash >= table->n)) { + psError(PS_ERR_UNKNOWN, true, + "Internal hash function out of range (%" PRId64 ")", hash); + } + */ + // ptr will have the correct hash bucket. + ptr = table->buckets[hash]; + + // We know the correct hash bucket, now we need to know what to do. + // If the data parameter is NULL, then, by definition, this is a retrieve + // or a remove operation on the hash table. + + if (data == NULL) { + if (remove + ) { + // We search through the linked list for this bucket in + // the hash table and look for an entry for this key. + + optr = ptr; + while (ptr != NULL) { + // Determine if this entry holds the correct key. + if (strcmp(key, ptr->key) == 0) { + // The following lines of code are fairly standard ways + // of removing an item from a single-linked list. + + psPtr data = ptr->data; + + optr->next = ptr->next; + if (ptr == table->buckets[hash]) { + table->buckets[hash] = ptr->next; + } + psFree(ptr); + + // By definition, the data associated with that key + // must be returned, not freed. + return data; + } + optr = ptr; + ptr = ptr->next; + } + return NULL; // not in hash + } + else { + // If we get here, then a retrieve operation is requested. So, + // we step trough the linked list at this bucket, and return the + // data once we find it, or return NULL if we don't. + while (ptr != NULL) { + if (strcmp(key, ptr->key) == 0) { + return ptr->data; + } + ptr = ptr->next; + } + return NULL; // not in hash + } + } else { + // We get here if this procedure was called with non-NULL data. + // Therefore, we should insert that data into the hash table. + // First, we search through the linked list for this bucket in + // the hash table and look for a duplicate entry for this key. + + while (ptr != NULL) { + if (strcmp(key, ptr->key) == 0) { + // We have found this key in the hash table. + + psTrace("psLib.types", 3, "Replacing data for %s\n", key); + + // NOTE: I have changed this behavior from the originally + // supplied code. Formerly, if itemFree was NULL, then + // the new data was not inserted into the hash table. + + psFree(ptr->data); + + ptr->data = psMemIncrRefCounter(data); + return data; + } + ptr = ptr->next; + } + // We did not found key in the linked list for this bucket of the hash + // table. So, we insert this data at the head of that linked list. + + table->buckets[hash] = hashBucketAlloc(key, data, table->buckets[hash]); + return data; + } +} + +/****************************************************************************** +psHashAdd(table, key, data): this procedure, which is part of +the public API, inserts a new key/data pair into the hash table. +Inputs: + table: a hash table + key: the key to use + data: the data to insert. +Return: + boolean value defining success or failure + *****************************************************************************/ +bool psHashAdd(psHash* hash, + const char *key, + psPtr data) +{ + PS_ASSERT_PTR_NON_NULL(hash, false); + PS_ASSERT_PTR_NON_NULL(key, false); + PS_ASSERT_PTR_NON_NULL(data, false); + + return (doHashWork(hash, key, data, false) != NULL); +} + +/****************************************************************************** +psHashLookup(table, key): this procedure, which is part of the public API, +looks up the specified key in the hash table and returns the data associated +with that key. + +Inputs: + table: a hash table + key: the key to use +Return: + The data associated with that key. + *****************************************************************************/ +psPtr psHashLookup(const psHash* hash, // hash to lookup key in + const char *key) // key to lookup +{ + PS_ASSERT_PTR_NON_NULL(hash, NULL); + PS_ASSERT_PTR_NON_NULL(key, NULL); + + return doHashWork((psPtr)hash, key, NULL, false); +} + +/****************************************************************************** +psHashRemove(table, key): this procedure, which is part of the +public API, removes the specified key from the hash table. +Inputs: + table: a hash table + key: the key to remove +Return: + boolean value defining success or failure + *****************************************************************************/ +bool psHashRemove(psHash* hash, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(hash, false); + PS_ASSERT_PTR_NON_NULL(key, false); + + psPtr data = NULL; + bool retVal = false; + + data = doHashWork(hash, key, NULL, true); + if (data != NULL) { + retVal = true; + } else { + retVal = false; + } + + return retVal; +} + +psArray* psHashToArray(const psHash* hash) +{ + PS_ASSERT_PTR_NON_NULL(hash, NULL); + + // first, let's just count the number of data elements to know what size + // psArray we need to allocate. + int nElements = 0; + int nbucket = hash->n; + //XXX: If we do psArrayAlloc(0) here and use psArrayAdd(result, 1, tmpBucket->data) + //we can eliminate the 2nd for loop below. + for (int i = 0; i < nbucket; i++) { + psHashBucket* tmpBucket = hash->buckets[i]; + while (tmpBucket != NULL) { + nElements++; + tmpBucket = tmpBucket->next; + } + } + + psArray* result = psArrayAlloc(nElements); + + // now fill in the array with the hash hash's data + psPtr* data = result->data; + for (int i = 0; i < nbucket; i++) { + psHashBucket* tmpBucket = hash->buckets[i]; + while (tmpBucket != NULL) { + *(data++) = psMemIncrRefCounter(tmpBucket->data); + tmpBucket = tmpBucket->next; + } + } + + return result; +} Index: /branches/rel-1-1/psLib/src/types/psHash.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psHash.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psHash.h (revision 12167) @@ -0,0 +1,117 @@ +/** @file psHash.h + * + * @brief Contains support for basic hashing functions. + * + * This file will hold the prototypes for defining a hash table with arbitrary + * data types, allocating/deallocating that has table, adding and removing + * data from that hash table, and listing all keys defined in the hash table. + * + * @author Robert Lupton, Princeton University + * @author Robert DeSonia, MHPCC + * @author GLG, MHPCC + * + * @version $Revision: 1.21 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 21:44:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_HASH_H +#define PS_HASH_H + +/// @addtogroup DataContainer Data Containers +/// @{ + +#include "psList.h" + +/** A bucket that holds an item of data. */ +typedef struct psHashBucket +{ + char *key; ///< The key for this item of data. + psPtr data; ///< The data itself. + struct psHashBucket* next; ///< The list of other possible keys. +} +psHashBucket; + + +//typedef struct HashTable psHash; ///< Opaque type for a hash table + +/** The hash-table itself. */ +typedef struct +{ + long n; ///< Number of buckets in hash table. + psHashBucket* *buckets; ///< The bucket data. + void *lock; ///< Optional lock for thread safety. +} +psHash; + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psHash structure, false otherwise. + */ +bool psMemCheckHash( + psPtr ptr ///< the pointer whose type to check +); + + +/// Allocate hash buckets in table. +#ifdef DOXYGEN +psHash* psHashAlloc( + long nalloc ///< The number of buckets to allocate. +); +#else // ifdef DOXYGEN +psHash* p_psHashAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc ///< The number of buckets to allocate. +); +#define psHashAlloc(nalloc) \ + p_psHashAlloc(__FILE__, __LINE__, __func__, nalloc) +#endif // ifdef DOXYGEN + + + +/// Insert entry into table. +bool psHashAdd( + psHash* hash, ///< The table to insert in. + const char *key, ///< The key to use. + psPtr data ///< The data to insert. +); + + +/// Lookup key in table. +psPtr psHashLookup( + const psHash* hash, ///< The table to lookup key in. + const char *key ///< The key to lookup. +); + + +/// Remove key from table. +bool psHashRemove( + psHash* hash, ///< The table to lookup key in. + const char *key ///< The key to lookup. +); + + +/// List all keys in table. +psList* psHashKeyList( + const psHash* hash ///< The table to list keys from.. +); + + +/** Create a psArray from a psHash contents. + * + * @return psArray* A new psArray with duplicate contents of the input psHash + */ +psArray* psHashToArray( + const psHash* hash ///< The table to convert to psArray. +); + + +/// @} End of DataContainer Functions +#endif // #ifndef PS_HASH_H Index: /branches/rel-1-1/psLib/src/types/psList.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psList.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psList.c (revision 12167) @@ -0,0 +1,651 @@ +/** @file psList.c + * @brief Support for doubly linked lists + * @ingroup LinkedList + * + * @author Robert Lupton, Princeton University + * @author Robert Daniel DeSonia, MHPCC + * @author Joshua Hoblitt, University of Hawaii + * + * @version $Revision: 1.61 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 04:35:35 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psError.h" +#include "psAbort.h" +#include "psMemory.h" +#include "psList.h" +#include "psTrace.h" +#include "psLogMsg.h" +#include "psAssert.h" + + +#define ITER_INIT_HEAD ((psPtr )1) // next iteration should return head +#define ITER_INIT_TAIL ((psPtr )2) // next iteration should return tail + +#define INITIAL_NUM_ITERATORS 16 // Initial number of iterators to create + +// private functions. +static void listFree(psList* list); +static void listIteratorFree(psListIterator* iter); +static bool listIteratorRemove(psListIterator* iterator); + +static void listFree(psList* list) +{ + if (list->iterators != NULL) { + + // remove the associated iterators -- any references are invalid once psList is freed. + psArray* iterators = list->iterators; + // ONLY orphan the iterators if the list iterators are about to be destroyed + // a case where this is not the case is in psListSort. + if (psMemGetRefCounter(iterators) < 2) { + for (int i = 0; i < iterators->n; i++) { + // orphan iterators first to avoid any callbacks to dying list + ((psListIterator*)iterators->data[i])->list = NULL; + } + } + psFree(iterators); + } + + for (psListElem* ptr = list->head; ptr != NULL;) { + psListElem* next = ptr->next; + + psFree(ptr->data); + psFree(ptr); + + ptr = next; + } +} + +static void listIteratorFree(psListIterator* iter) +{ + // remove this iterator from the parent list + if (iter->list != NULL) { + psArray* iters = iter->list->iterators; + for (int lcv = 0; lcv < iters->n; lcv++) { + if (iters->data[lcv] == iter) { + // following is done to match SDRS. + iters->data[lcv] = iters->data[iters->n-1]; + iters->n--; + break; + } + } + } +} + +static bool listIteratorRemove(psListIterator* iterator) +{ + if (iterator == NULL || iterator->cursor == NULL) { + return false; + } + + psListElem* elem = iterator->cursor; + psList* list = iterator->list; + int index = iterator->index; + + if (elem == list->head) { // head of list? + list->head = elem->next; + } else { + elem->prev->next = elem->next; + } + + if (elem == list->tail) { // tail of list? + list->tail = elem->prev; + } else { + elem->next->prev = elem->prev; + } + + psArray* iterators = list->iterators; + for (int i = 0; i < iterators->n; i++) { + psListIterator* iter = (psListIterator*) iterators->data[i]; + if (iter->cursor == elem) { + iter->cursor = NULL; + } else if (iter->index > index && iter->index > 0) { + iter->index--; + } + } + + list->n--; + + // OK, delete orphaned list element and its data + psFree(elem->data); + psFree(elem); + + return true; +} + +psList* p_psListAlloc(const char *file, + unsigned int lineno, + const char *func, + psPtr data) +{ + psList* list = p_psAlloc(file, lineno, func, sizeof(psList)); + + psMemSetDeallocator(list, (psFreeFunc) listFree); + + list->n = 0; + list->head = list->tail = NULL; + list->iterators = psArrayAllocEmpty(INITIAL_NUM_ITERATORS); + + // create a default iterator + psListIteratorAlloc(list,PS_LIST_HEAD,true); + + if (data != NULL) { + psListAdd(list, PS_LIST_TAIL, data); + } + + return list; +} + +bool psMemCheckList(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)listFree ); +} + +psListIterator* p_psListIteratorAlloc(const char *file, + unsigned int lineno, + const char *func, + psList* list, + long location, + bool mutable) +{ + if (list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified list is NULL.")); + return false; + } + psListIterator* iter = p_psAlloc(file, lineno, func, sizeof(psListIterator)); + + psMemSetDeallocator(iter, (psFreeFunc) listIteratorFree); + + // initialize the attributes + iter->list = list; + iter->cursor = NULL; + iter->index = 0; + iter->offEnd = false; + iter->mutable = mutable; + + // associate the iterator with the list + list->iterators = psArrayAdd(list->iterators,0,iter); + // don't want the list's array of iterators to hold a true reference + psMemDecrRefCounter(iter); + + if (! psListIteratorSet(iter,location)) { + psFree(iter); + return NULL; + } + + return iter; +} + +bool psListIteratorSet(psListIterator* iterator, + long location) +{ + if (iterator == NULL || iterator->list == NULL) { + return false; + } + + psList* list = iterator->list; + + if (location == PS_LIST_TAIL) { + iterator->cursor = list->tail; + iterator->index = list->n - 1; + iterator->offEnd = false; + return true; + } + + if (location == PS_LIST_HEAD) { + iterator->cursor = list->head; + iterator->index = 0; + iterator->offEnd = false; + return true; + } + + if (location < 0) { + location = list->n + location; + } + + if (location < 0 || location >= (int)list->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified location, %ld, is invalid."), + location); + return false; + } + + psListElem* cursor = iterator->cursor; + int index = iterator->index; + if (cursor == NULL) { // set the cursor to the head if it is NULL + //XXX: if location can't be >= n, it def. can't be greater than n/2. + /* if (location > list->n/2) { // closer to tail or head? + cursor = list->tail; + index = list->n - 1; + } else { + */ + cursor = list->head; + index = 0; + // } + } + + if (location < index) { + psS32 diff = index - location; + + for (psS32 count = 0; count < diff; count++) { + cursor = cursor->prev; // shouldn't need to check for NULL + } + } else { + psS32 diff = location - index; + + for (psS32 count = 0; count < diff; count++) { + cursor = cursor->next; // shouldn't need to check for NULL + } + } + iterator->cursor = cursor; + iterator->index = location; + iterator->offEnd = false; + + return true; +} + +bool psListAdd(psList* list, + long location, + psPtr data) +{ + + if (list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psList reference is NULL.")); + return false; + } + + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified data item is NULL.")); + return false; + } + + if (location > 0 && location >= (int)list->n) { + psLogMsg(__func__,PS_LOG_WARN, + "Specified location, %ld, is beyond the end of the list. " + "Adding data item to tail.", + location); + location = PS_LIST_TAIL; + } + + // move ourselves to the given position + if (! psListIteratorSet(list->iterators->data[0],location)) { + return false; + } + + if (location == PS_LIST_TAIL) { + // insert the element at the end of the list + return psListAddAfter(list->iterators->data[0],data); + } else { + return psListAddBefore(list->iterators->data[0],data); + } +} + +bool psListAddAfter(psListIterator* iterator, + void* data) +{ + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified data item is NULL.")); + return false; + } + + if (iterator == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified iterator is NULL.")); + return false; + } + + // Check if the list pointed by the iterator can be changed + if (!iterator->mutable) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified iterator indicates list is non-mutable.")); + return false; + } + + psListElem* cursor = iterator->cursor; + psList* list = iterator->list; + + if (cursor == NULL && list->head != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified iterator is not valid.")); + return false; + } + + psListElem* elem = psAlloc(sizeof(psListElem)); + + // set the new list element's attributes + if (cursor == NULL) { // must be an empty list + elem->prev = NULL; + elem->next = NULL; + list->head = elem; + list->tail = elem; + } else { + elem->prev = cursor; + elem->next = cursor->next; + cursor->next = elem; + if (elem->next == NULL) { + list->tail = elem; + } else { + elem->next->prev = elem; + } + } + + elem->data = psMemIncrRefCounter(data); + + list->n++; + + //XXX: The following is unreachable. cursor can't == list->tail unless cursor->next == NULL. + // in which case list->tail will be set to elem. (list->tail = elem;) + /* if (cursor == list->tail) { + list->tail = elem; + } + */ + psArray* iterators = list->iterators; + int index = iterator->index; + for (int i = 0; i < iterators->n; i++) { + psListIterator* iter = (psListIterator*) iterators->data[i]; + if (iter->index > index) { + iter->index++; + } + } + + return true; +} + +bool psListAddBefore(psListIterator* iterator, + void* data) +{ + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified data item is NULL.")); + return false; + } + + if (iterator == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified iterator is NULL.")); + return false; + } + + // Check if the list pointed by the iterator can be changed + if (!iterator->mutable) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified iterator indicates list is non-mutable.")); + return false; + } + + psListElem* cursor = iterator->cursor; + psList* list = iterator->list; + + if (cursor == NULL && list->head != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified iterator is not valid.")); + return false; + } + + psListElem* elem = psAlloc(sizeof(psListElem)); + + // set the new list element's attributes + if (cursor == NULL) { // empty list. + elem->prev = NULL; + elem->next = NULL; + list->head = elem; + list->tail = elem; + } else { + elem->prev = cursor->prev; + elem->next = cursor; + cursor->prev = elem; + if (elem->prev == NULL) { + list->head = elem; + } else { + elem->prev->next = elem; + } + } + + elem->data = psMemIncrRefCounter(data); + + list->n++; + + //XXX: The following is unreachable. cursor can't == list->head unless cursor->prev == NULL. + // in which case list->head will be set to elem. (list->tail = elem;) + /* if (cursor == list->head) { + list->head = elem; + } + */ + psArray* iterators = list->iterators; + int index = iterator->index; + for (int i = 0; i < iterators->n; i++) { + psListIterator* iter = (psListIterator*) iterators->data[i]; + if (iter->index >= index) { + iter->index++; + } + } + + return true; +} + +bool psListRemove(psList* list, + long location) +{ + if (list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psList reference is NULL.")); + return false; + } + + // move ourselves to the given position + psListIterator* defaultIterator = list->iterators->data[0]; + if (! psListIteratorSet(defaultIterator,location)) { + return false; + } + + return listIteratorRemove(defaultIterator); +} + +bool psListRemoveData(psList* list, + psPtr data) +{ + if (list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psList reference is NULL.")); + return false; + } + + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified data item is NULL.")); + return false; + } + + psListElem* elem = list->head; + int index = 0; + while (elem != NULL && elem->data != data) { + elem = elem->next; + index++; + } + if (elem == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified data item is not found in the psList.")); + return false; + } + + psListIterator* iterator = (psListIterator*)list->iterators->data[0]; + iterator->index = index; + iterator->cursor = elem; + + return listIteratorRemove(iterator); +} + +psPtr psListGet(psList* list, + long location) +{ + if (list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psList reference is NULL.")); + return NULL; + } + + if (list->head == NULL) { // list empty? + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psList reference is empty.")); + return NULL; + } + + psListIterator* iterator = list->iterators->data[0]; + + if (! psListIteratorSet(iterator,location)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified location, %ld, is invalid."), + location); + return NULL; + } + + return iterator->cursor->data; +} + +/* + * and now return the previous/next element of the list + */ +psPtr psListGetAndIncrement(psListIterator* iterator) +{ + if (iterator == NULL ) { + return NULL; + } + if (( iterator->cursor == NULL) && (iterator->offEnd)) { + return NULL; + } + if ( (iterator->cursor == NULL) && (!iterator->offEnd)) { + iterator->cursor = iterator->list->head; + iterator->index = 0; + return NULL; + } + + psPtr data = iterator->cursor->data; + + iterator->cursor = iterator->cursor->next; + iterator->index++; + if (iterator->cursor == NULL) { + iterator->offEnd = true; + } + + return data; +} + +psPtr psListGetAndDecrement(psListIterator* iterator) +{ + if (iterator == NULL ) { + return NULL; + } + if ((iterator->cursor == NULL) && (!iterator->offEnd)) { + return NULL; + } + if ( (iterator->cursor == NULL) && (iterator->offEnd) ) { + iterator->cursor = iterator->list->tail; + iterator->index = iterator->list->n-1; + iterator->offEnd = false; + return NULL; + } + + psPtr data = iterator->cursor->data; + + iterator->cursor = iterator->cursor->prev; + iterator->index--; + + return data; +} + +/* + * Convert a psList to/from a psVoidPtrArray + */ +psArray* psListToArray(const psList* list) +{ + PS_ASSERT_PTR_NON_NULL(list, NULL); + + long n = list->n; + psArray *arr = psArrayAlloc(n); + + psListElem *ptr = list->head; + for (psS32 i = 0; i < n; i++) { + arr->data[i] = psMemIncrRefCounter(ptr->data); + ptr = ptr->next; + } + + return arr; +} + +psList* psArrayToList(const psArray* array) +{ + psU32 n; + psList* list; // list of elements + + if (array == NULL) { + return NULL; + } + + list = psListAlloc(NULL); + n = array->n; + for (psS32 i = 0; i < n; i++) { + psListAdd(list, PS_LIST_TAIL, array->data[i]); + } + + return list; +} + +psList* psListSort(psList* list, + psComparePtrFunc func) +{ + psArray* arr; + + if (list == NULL) { + return NULL; + } + if (func == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified psComparePtrFunc is NULL.")); + return list; + } + // convert to indexable vector for use by qsort. + arr = psListToArray(list); + psArray* iterators = psMemIncrRefCounter(list->iterators); + psFree(list); + + arr = psArraySort(arr, func); + + // convert back to linked list + list = psArrayToList(arr); + psFree(list->iterators); + list->iterators = iterators; + psFree(arr); + + // sorting should invalidate all iterator positions. + for (int i = 0; i < iterators->n; i++) { + ((psListIterator*)iterators->data[i])->cursor = NULL; + } + + return list; +} + +long psListLength(const psList *list) +{ + if ( !psMemCheckList((psList*)list) ) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Error: Specified list is not a valid psList \n"); + return -1; + } + return (list->n); +} + + Index: /branches/rel-1-1/psLib/src/types/psList.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psList.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psList.h (revision 12167) @@ -0,0 +1,282 @@ +/** @file psList.h + * @brief Support for doubly linked lists + * + * @author Robert Lupton, Princeton University + * @author Robert Daniel DeSonia, MHPCC + * + * @version $Revision: 1.40 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 04:35:35 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_LIST_H +#define PS_LIST_H + +#include "psCompare.h" +#include "psArray.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/** Special values of index into list + * + * This list of possible list position values should be contiguous + * non-positive values ending with PS_LIST_UNKNOWN. Any value + * less-than-or-equal-to PS_LIST_UNKNOWN is considered a undefined position. + * + */ +enum { + PS_LIST_HEAD = 0, ///< at head + PS_LIST_TAIL = -1, ///< at tail +}; + + +/** Doubly-linked list element */ +typedef struct psListElem +{ + struct psListElem* prev; ///< previous link in list + struct psListElem* next; ///< next link in list + psPtr data; ///< real data item +} +psListElem; + + +/** The psList Linked list structure. User should not allocate this struct + * directly; rather the psListAlloc should be used. + * + * @see psListAlloc + */ +typedef struct +{ + long n; ///< number of elements on list + psListElem* head; ///< first element on list (may be NULL) + psListElem* tail; ///< last element on list (may be NULL) + psArray* iterators; + ///< array of all iterators associated with this list. First iterator is + ///< used internally to improve performance when using indexed access, all + ///< others are user-level iterators created by psListIteratorAlloc. + void *lock; ///< Optional lock for thread safety +} +psList; + + +/** The psList iterator structure. This should be allocated via + * psListIteratorAlloc and not directly. + * + * The life span of a psListIterator object is ended by either a psFree + * of this structure OR psFree of the psList in which it operates on. + * + * @see psListIteratorAlloc, psListIteratorSet, psListGetAndIncrement, psListGetAndDecrement + */ +typedef struct +{ + psList* list; ///< List iterator to works on + psListElem* cursor; ///< current cursor position + bool offEnd; ///< Iterator off the end? + long index; ///< the index number in the list + bool mutable; ///< Is it permissible to modify the list? +} +psListIterator; + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psList structure, false otherwise. + */ +bool psMemCheckList( + psPtr ptr ///< the pointer whose type to check +); + + +/** Creates a psList linked list object. + * + * @return psList* A new psList object. + */ +#ifdef DOXYGEN +psList* psListAlloc( + psPtr data ///< initial data item; may be NULL if an empty psList is desired +); +#else // ifdef DOXYGEN +psList* p_psListAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psPtr data ///< initial data item; may be NULL if an empty psList is desired +); +#define psListAlloc(data) \ + p_psListAlloc(__FILE__, __LINE__, __func__, data) +#endif // ifdef DOXYGEN + + +/** Creates a psListIterator object and associates it with a psList. + * + * @return psListIterator* A new psListIterator object. + */ +#ifdef DOXYGEN +psListIterator* psListIteratorAlloc( + psList* list, ///< the psList to iterate with + long location, ///< the initial starting point. + ///< This can be a numeric index, PS_LIST_HEAD, or PS_LIST_TAIL. + bool mutable ///< Is it permissible to modify list? +); +#else // ifdef DOXYGEN +psListIterator* p_psListIteratorAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psList* list, ///< the psList to iterate with + long location, ///< the initial starting point. + ///< This can be a numeric index, PS_LIST_HEAD, or PS_LIST_TAIL. + bool mutable ///< Is it permissible to modify list? +); +#define psListIteratorAlloc(list, location, mutable) \ + p_psListIteratorAlloc(__FILE__, __LINE__, __func__, list, location, mutable) +#endif // ifdef DOXYGEN + + +/** Set the iterator of the list to a given position. If location is invalid the + * iterator position is not changed. + * + * @return bool TRUE if iterator successfully set, otherwise FALSE. + */ +bool psListIteratorSet( + psListIterator* iterator, ///< list iterator + long location ///< index number, PS_LIST_HEAD, or PS_LIST_TAIL +); + + +/** Adds an element to a psList at position given. + * + * @return bool TRUE if item was successfully added, otherwise FALSE. + */ +bool psListAdd( + psList* list, ///< list to add item to + long location, ///< index, PS_LIST_HEAD, PS_LIST_TAIL, or numbered location. + psPtr data ///< data item to add. If NULL, list is not modified. +); + + +/** Adds an data item to a psList at position just after the list position given + * + * @return bool TRUE if item was successfully added, otherwise FALSE. + */ +bool psListAddAfter( + psListIterator* iterator, ///< list position to add item to + psPtr data ///< data item to add. If NULL, list is not modified. +); + + +/** Adds a data item to a psList at position just before the list position given + * + * @return bool TRUE if item was successfully added, otherwise FALSE. + */ +bool psListAddBefore( + psListIterator* iterator, ///< list position to add item to + psPtr data ///< data item to add. If NULL, list is not modified. +); + +/** Remove an item at the specified location from a list. + * + * @return bool TRUE if element is successfully removed, otherwise FALSE. + */ +bool psListRemove( + psList* list, ///< list to remove element from + long location ///< index of item +); + + +/** Remove an item from a list. + * + * @return bool TRUE if element is successfully removed, otherwise FALSE. + */ +bool psListRemoveData( + psList* list, ///< list to remove element from + psPtr data ///< data item to find and remove +); + + +/** Retrieve an item from a list. + * + * @return psPtr the item corresponding to the location parameter. If + * location is invalid (e.g., a numbered index greater + * than the list size or if the list is empty), a + * NULL is returned. + */ +psPtr psListGet( + psList* list, ///< list to retrieve element from + long location ///< index number, PS_LIST_HEAD, or PS_LIST_TAIL +); + + +/** Position the specified iterator to the next item in list. + * + * @return psPtr the data item at the original iterator position or NULL if the + * iterator went past the end of the list. + */ +psPtr psListGetAndIncrement( + psListIterator* iterator ///< iterator to move +); + + +/** Position the specified iterator to the previous item in list. + * + * @return psPtr the data item at the original iterator position or NULL if the + * iterator went past the beginning of the list. + */ +psPtr psListGetAndDecrement( + psListIterator* iterator ///< iterator to move +); + + +/** Convert a linked list to an array + * + * @return psArray* A new psArray populated with elements from the list, + * or NULL if the given dlist parameter is NULL. + */ +psArray* psListToArray( + const psList* list ///< List to convert +); + + +/** Convert array to a doubly-linked list + * + * @return psList* A new psList populated with elements formt the psArray, + * or NULL is the given arr parameter is NULL. + */ +psList* psArrayToList( + const psArray* array ///< vector to convert +); + + +/** Sort a list via a comparison function. + * + * The comparison function must return an integer less than, equal to, or + * greater than zero if the first argument is considered to be respectively + * less than, equal to, or greater than the second. + * + * If two members compare as equal, their order in the sorted array is + * undefined. + * + * @return psList* Sorted list. + */ +psList* psListSort( + psList* list, ///< the list to sort + psComparePtrFunc func ///< the comparison function +); + + +/** Get the number of elements in use from a specified psList. (list.n) + * + * @return long: The number of elements in use. + */ +long psListLength( + const psList *list ///< input psList +); + + +/// @} End of DataContainer Functions +#endif // #ifndef PS_LIST_H Index: /branches/rel-1-1/psLib/src/types/psLookupTable.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psLookupTable.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psLookupTable.c (revision 12167) @@ -0,0 +1,925 @@ +/** @file psLookupTable.c +* +* @brief This file defines the structure and functions for table lookups. +* +* @ingroup types +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.48 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 21:57:02 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#undef __STRICT_ANSI__ +#include +#define __STRICT_ANSI__ +#include +#include +#include + +#include "psMemory.h" +#include "psString.h" +#include "psError.h" +#include "psLookupTable.h" + +#include "psAssert.h" + +/******************************************************************************/ +/* DEFINE STATEMENTS */ +/******************************************************************************/ + +/** Maximum size of a string */ +#define MAX_STRING_LENGTH 256 +#define ARRAY_STRIDE 16 +#define INITIAL_NUM 10 // Initial number of elements +/******************************************************************************/ +/* TYPE DEFINITIONS */ +/******************************************************************************/ + +// None + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +static bool ignoreLine(char *inString); +static char *cleanString(char *inString, int sLen); +static char* getToken(char **inString, char *delimiter, psParseErrorType *status); +static psS32 parseS32(char *inString, psParseErrorType *status); +static psS64 parseS64(char *inString, psParseErrorType *status); +static psF32 parseF32(char *inString, psParseErrorType *status); +static psF64 parseF64(char *inString, psParseErrorType *status); +static void parseValue(psVector *vec, psU64 index, char* strValue, psParseErrorType *status); +static void lookupTableFree(psLookupTable* table); + +/* Determines if a line is blank (whitespace only) or a commentline. It returns true if so. + The input string must be null terminated. */ +static bool ignoreLine(char *inString) +{ + while(*inString!='\0' && *inString!='#') { + if(!isspace(*inString)) { + return false; + } + inString++; + } + return true; +} + + +/* Removes leading and trailing whitespace and # characters from a string. The + cleaned string is a new null terminated copy of the original input string. */ +static char *cleanString(char *inString, + int sLen) +{ + char *ptrB = NULL; + char *ptrE = NULL; + char *cleaned = NULL; + + ptrB = inString; + + // Skip over leading # or whitespace + // while (isspace(*ptrB) || *ptrB=='#') { + // ptrB++; + // } + + // Skip over trailing whitespace, null terminators, and # characters + ptrE = inString + sLen; + while(isspace(*ptrE) || *ptrE=='\0' || *ptrE=='#') { + ptrE--; + } + + // Length, sLen, does not include '\0' + sLen = ptrE - ptrB + 1; + + // Adds '\0' to end of string and +1 to sLen + cleaned = psStringNCopy(ptrB, sLen); + + return cleaned; +} + + +/* Returns cleaned token based on delimiter, but not including delimiter. Also changes + the pointer location the beginning of the string. Tokens are newly allocated null + terminated strings. */ +static char* getToken(char **inString, + char *delimiter, + psParseErrorType *status) +{ + char *cleanToken = NULL; + int sLen = 0; + + // Skip over leading whitespace + while(isspace(**inString)) { + (*inString)++; + } + + // Length of token, not including delimiter + sLen = strcspn(*inString, delimiter); + if(sLen) { + + // Create new, cleaned, and null terminated token + cleanToken = cleanString(*inString, sLen); + + // Move to end of token + (*inString) += sLen; + } + /* else if(**inString!='\0' && sLen==0) { + *status = PS_PARSE_ERROR_GENERAL; + } + */ + return cleanToken; +} + +/* Returns single parsed value as a psS32. The input string must be cleaned and + null terminated. */ +static psS32 parseS32(char *inString, + psParseErrorType *status) +{ + char *end = NULL; + psS32 value = 0.0; + + + value = (psS32)strtol(inString, &end, 0); + if(*end != '\0' && !isspace(*end)) { + *status = PS_PARSE_ERROR_VALUE; + } + /* else if(inString==end) { + *status = PS_PARSE_ERROR_VALUE; + } + */ + return value; +} + +/* Returns single parsed value as a psS64. The input string must be cleaned and + null terminated. */ +static psS64 parseS64(char *inString, + psParseErrorType *status) +{ + char *end = NULL; + psS64 value = 0.0; + + value = (psS64)strtoll(inString, &end, 0); + if(*end != '\0' && !isspace(*end)) { + *status = PS_PARSE_ERROR_VALUE; + } + /* else if(inString==end) { + *status = PS_PARSE_ERROR_VALUE; + } + */ + return value; +} + +/* Returns single parsed value as a psF32. The input string must be cleaned and + null terminated. */ +static psF32 parseF32(char *inString, + psParseErrorType *status) +{ + char *end = NULL; + psF32 value = 0.0; + + value = (psF32)strtof(inString, &end); + if(*end != '\0' && !isspace(*end)) { + *status = PS_PARSE_ERROR_VALUE; + } + /* else if(inString==end) { + *status = PS_PARSE_ERROR_VALUE; + } + */ + return value; +} + +/* Returns single parsed value as a psF64. The input string must be cleaned and + null terminated. */ +static psF64 parseF64(char *inString, + psParseErrorType *status) +{ + char *end = NULL; + psF64 value = 0.0; + + value = (psF64)strtod(inString, &end); + if(*end != '\0' && !isspace(*end)) { + *status = PS_PARSE_ERROR_VALUE; + } + /* else if(inString==end) { + *status = PS_PARSE_ERROR_VALUE; + } + */ + return value; +} + +/* Returns single parsed value as a double precision number. The input string must be + cleaned and null terminated. */ +static void parseValue(psVector *vec, + psU64 index, + char* strValue, + psParseErrorType *status) +{ + psElemType type; + + + /* if(vec == NULL) { + *status = 1; + return; + } + */ + type = vec->type.type; + + switch(type) { + case PS_TYPE_S32: + vec->data.S32[index] = parseS32(strValue, status); + break; + case PS_TYPE_S64: + vec->data.S64[index] = parseS64(strValue, status); + break; + case PS_TYPE_F32: + vec->data.F32[index] = parseF32(strValue, status); + break; + case PS_TYPE_F64: + default: + vec->data.F64[index] = parseF64(strValue, status); + break; + // default: + // *status = PS_PARSE_ERROR_TYPE; + } + + return; +} + +static void lookupTableFree(psLookupTable* table) +{ + psFree(table->values); + psFree((void *)table->filename); + psFree((void *)table->format); +} + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +bool psMemCheckLookupTable(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)lookupTableFree ); +} + + +psLookupTable* p_psLookupTableAlloc(const char *file, + unsigned int lineno, + const char *func, + const char *filename, + const char *format, + long indexCol) +{ + // Can't read table if you don't know its name + PS_ASSERT_PTR_NON_NULL(filename,NULL); + + // Can't read table if you don't know its format + PS_ASSERT_PTR_NON_NULL(format,NULL); + + psLookupTable *outTable = NULL; + + // Allocate lookup table + outTable = (psLookupTable*)p_psAlloc(file, lineno, func, sizeof(psLookupTable)); + + // Set deallocator + psMemSetDeallocator(outTable, (psFreeFunc)lookupTableFree); + + // Allocate and set file name and format strings + outTable->filename = psStringCopy(filename); + outTable->format = psStringCopy(format); + + // Valid ranges. Automatically set by table read if both zero. + *(double *)&outTable->validFrom = 0; + *(double *)&outTable->validTo = 0; + outTable->indexCol = indexCol; + + // Vector of independent index values. Filled by table read. + outTable->index = NULL; + + // Array of dependent table values corresponding to index values. Filled by table read. + outTable->values = NULL; + + return outTable; +} + +#define UPDATE_VALID_TO_FROM(TABLE) \ +switch (TABLE->index->type.type) { \ +case PS_TYPE_U8: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.U8[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.U8[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_S8: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.S8[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.S8[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_U16: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.U16[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.U16[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_S16: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.S16[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.S16[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_U32: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.U32[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.U32[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_S32: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.S32[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.S32[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_U64: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.U64[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.U64[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_S64: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.S64[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.S64[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_F32: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.F32[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.F32[TABLE->index->n-1]; \ + break; \ +case PS_TYPE_F64: \ + *(double *)&TABLE->validFrom = (psF64)TABLE->index->data.F64[0]; \ + *(double *)&TABLE->validTo = (psF64)TABLE->index->data.F64[TABLE->index->n-1]; \ + break; \ +default: \ + *(double *)&TABLE->validFrom = (psF64)0; \ + *(double *)&TABLE->validTo = (psF64)0; \ + break; \ +} + +#define COPY_VECTOR_VALUES(VEC_OUT,INDEX_OUT,VEC_IN,INDEX_IN) \ +switch(((psVector*)(VEC_IN))->type.type) { \ +case PS_TYPE_U8: \ + ((psVector*)VEC_OUT)->data.U8[INDEX_OUT] = ((psVector*)VEC_IN)->data.U8[INDEX_IN]; \ + break; \ +case PS_TYPE_U16: \ + ((psVector*)VEC_OUT)->data.U16[INDEX_OUT] = ((psVector*)VEC_IN)->data.U16[INDEX_IN]; \ + break; \ +case PS_TYPE_U32: \ + ((psVector*)VEC_OUT)->data.U32[INDEX_OUT] = ((psVector*)VEC_IN)->data.U32[INDEX_IN]; \ + break; \ +case PS_TYPE_U64: \ + ((psVector*)VEC_OUT)->data.U64[INDEX_OUT] = ((psVector*)VEC_IN)->data.U64[INDEX_IN]; \ + break; \ +case PS_TYPE_S8: \ + ((psVector*)VEC_OUT)->data.S8[INDEX_OUT] = ((psVector*)VEC_IN)->data.S8[INDEX_IN]; \ + break; \ +case PS_TYPE_S16: \ + ((psVector*)VEC_OUT)->data.S16[INDEX_OUT] = ((psVector*)VEC_IN)->data.S16[INDEX_IN]; \ + break; \ +case PS_TYPE_S32: \ + ((psVector*)VEC_OUT)->data.S32[INDEX_OUT] = ((psVector*)VEC_IN)->data.S32[INDEX_IN]; \ + if(INDEX_OUT == 0) { \ + validFrom = ((psVector*)VEC_OUT)->data.S32[INDEX_OUT]; \ + } \ + if(INDEX_OUT == ((psVector*)VEC_OUT)->n-1 ) { \ + validTo = ((psVector*)VEC_OUT)->data.S32[INDEX_OUT]; \ + } \ + break; \ +case PS_TYPE_S64: \ + ((psVector*)VEC_OUT)->data.S64[INDEX_OUT] = ((psVector*)VEC_IN)->data.S64[INDEX_IN]; \ + if(INDEX_OUT == 0) { \ + validFrom = ((psVector*)VEC_OUT)->data.S64[INDEX_OUT]; \ + } \ + if(INDEX_OUT == ((psVector*)VEC_OUT)->n-1 ) { \ + validTo = ((psVector*)VEC_OUT)->data.S64[INDEX_OUT]; \ + } \ + break; \ +case PS_TYPE_F32: \ + ((psVector*)VEC_OUT)->data.F32[INDEX_OUT] = ((psVector*)VEC_IN)->data.F32[INDEX_IN]; \ + if(INDEX_OUT == 0) { \ + validFrom = ((psVector*)VEC_OUT)->data.F32[INDEX_OUT]; \ + } \ + if(INDEX_OUT == ((psVector*)VEC_OUT)->n-1 ) { \ + validTo = ((psVector*)VEC_OUT)->data.F32[INDEX_OUT]; \ + } \ + break; \ +case PS_TYPE_F64: \ + ((psVector*)VEC_OUT)->data.F64[INDEX_OUT] = ((psVector*)VEC_IN)->data.F64[INDEX_IN]; \ + if(INDEX_OUT == 0) { \ + validFrom = ((psVector*)VEC_OUT)->data.F64[INDEX_OUT]; \ + } \ + if(INDEX_OUT == ((psVector*)VEC_OUT)->n-1 ) { \ + validTo = ((psVector*)VEC_OUT)->data.F64[INDEX_OUT]; \ + } \ + break; \ +default: \ + break; \ +} + +psArray *psVectorsReadFromFile(const char *filename, + const char *format) +{ + psArray* outputArray = NULL; + psVector* colVector = NULL; + char* strValue = NULL; + char* strNum = NULL; + char* line = NULL; + char* linePtr = NULL; + int numCols = 0; + int numRows = 0; + FILE* fp = NULL; + const char* tempFormat = NULL; + psParseErrorType parseStatus = PS_PARSE_SUCCESS; + + // Check for nul file name + PS_ASSERT_PTR_NON_NULL(filename,NULL); + + // Parse format string for valid string + PS_ASSERT_PTR_NON_NULL(format,NULL); + + // Create temp pointer which can then be used several times + tempFormat = format; + + // Create output array and set array elements to zero + outputArray = psArrayAllocEmpty(INITIAL_NUM); + + // Parse the format string to determine how many vectors + // and whether the format string is valid + while((strValue=getToken((char**)&tempFormat," \t",&parseStatus))) { + + // Check for %d format sub string + if(strcmp(strValue,"\%d") == 0 ) { + numCols++; + colVector = psVectorAlloc(1,PS_TYPE_S32); + outputArray = psArrayAdd(outputArray, ARRAY_STRIDE, colVector); + psFree(colVector); + } else if (strcmp(strValue,"\%ld") == 0) { + numCols++; + colVector = psVectorAlloc(1,PS_TYPE_S64); + outputArray = psArrayAdd(outputArray, ARRAY_STRIDE, colVector); + psFree(colVector); + } else if (strcmp(strValue,"\%f") == 0) { + numCols++; + colVector = psVectorAlloc(1,PS_TYPE_F32); + outputArray = psArrayAdd(outputArray, ARRAY_STRIDE, colVector); + psFree(colVector); + } else if (strcmp(strValue,"\%lf") == 0) { + numCols++; + colVector = psVectorAlloc(1,PS_TYPE_F64); + outputArray = psArrayAdd(outputArray, ARRAY_STRIDE, colVector); + psFree(colVector); + } else if (strstr(strValue,"\%*") != 0) { + // Don't increase number of columns + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Invalid format specifier"); + psFree(strValue); + numCols = 0; + break; + } + psFree(strValue); + } + + // If the format string was parsed successfully and return numCols the + // prepare to open file and read values + if(numCols > 0) { + + // Open specified file + if((fp=fopen(filename, "r")) == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Failed to open file %s."), + filename); + psFree(outputArray); + return NULL; + } else { + // Initialize array index + int arrayIndex = 0; + + // Create reusable line for continuous read + line = (char*)psAlloc(MAX_STRING_LENGTH*sizeof(char)); + + // Loop through file to get numRows, numCols, and column data types + while((fgets(line, MAX_STRING_LENGTH, fp) != NULL) && + (parseStatus == PS_PARSE_SUCCESS)) { + + // Copy pointer to line for parsing + linePtr = line; + + // If line is not a comment or blank, then extract data + if(!ignoreLine(linePtr)) { + numRows++; + + // Copy format pointer for parsing + tempFormat = format; + arrayIndex = 0; + parseStatus = PS_PARSE_SUCCESS; + + // Loop through format and line strings to get values in text table file + while((strValue=getToken((char**)&tempFormat," \t",&parseStatus)) + && (strNum=getToken((char**)&linePtr," \t",&parseStatus)) ) { + // Set column vector + colVector = outputArray->data[arrayIndex]; + + // Set column entries based on format string defining the type + if(strcmp(strValue,"\%d") == 0 ) { + colVector = psVectorRecycle(colVector, numRows, + colVector->type.type); + parseValue(colVector,numRows-1,strNum,&parseStatus); + arrayIndex++; + } else if (strcmp(strValue,"\%ld") == 0) { + colVector = psVectorRecycle(colVector, numRows, + colVector->type.type); + parseValue(colVector,numRows-1,strNum,&parseStatus); + arrayIndex++; + } else if (strcmp(strValue,"\%f") == 0) { + colVector = psVectorRecycle(colVector, numRows, + colVector->type.type); + parseValue(colVector,numRows-1,strNum,&parseStatus); + arrayIndex++; + } else if (strcmp(strValue,"\%lf") == 0) { + colVector = psVectorRecycle(colVector, numRows, + colVector->type.type); + parseValue(colVector,numRows-1,strNum,&parseStatus); + arrayIndex++; + } else if (strstr(strValue,"\%*") != 0) { + // Don't increase number of columns + } + psFree(strValue); + psFree(strNum); + + // If the file line was not parsed successful report + // error and return NULL + if(parseStatus != PS_PARSE_SUCCESS) { + psError(PS_ERR_UNKNOWN, true, + "Parsing text file failed."); + fclose(fp); + psFree(outputArray); + psFree(line); + return NULL; + } + } + if (strValue != NULL && strNum == NULL) { + psError(PS_ERR_UNKNOWN, true, + "Parsing text file failed - missing table value(s)."); + fclose(fp); + psFree(outputArray); + psFree(line); + psFree(strValue); + return NULL; + } + } // ignore line + } + + //Return NULL for an empty table + if (numRows == 0) { + psError(PS_ERR_UNKNOWN, true, + "Parsing text file failed - input table is empty."); + fclose(fp); + psFree(outputArray); + psFree(line); + return NULL; + } + + // Read on the lines in the file - close file pointer + fclose(fp); + psFree(line); + } + } else { + // Format string parse error detected + psError(PS_ERR_UNKNOWN, true, + "Format string was not parsed sucessfully"); + psFree(outputArray); + return NULL; + } + + // Return populated array + return outputArray; +} + +psLookupTable *p_psLookupTableImport(const char *file, + unsigned int lineno, + const char *func, + psLookupTable *table, + const psArray *vectors, + long indexCol) +{ + psLookupTable* outputTable = NULL; + bool sortNeeded = false; + psF64 validTo = 0; + psF64 validFrom = 0; + + // Check for NULL input table + // XXX table/outputtable should be allocated if NULL + PS_ASSERT_PTR_NON_NULL(table,NULL); + + // Check for NULL vectors + PS_ASSERT_PTR_NON_NULL(vectors,NULL); + + // Check for invalid index column + if(indexCol < 0 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Index column cannot be less than zero"); + return NULL; + } + + if (indexCol >= vectors->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Index column, %ld, is larger" + " than number of columns, %ld.", indexCol, vectors->n); + return NULL; + } + + psVector* indexColumnVector = vectors->data[indexCol]; + psS32 numRows = indexColumnVector->n; + psS32 numCols = vectors->n; + + // Check if array is sorted on the index column + psVector* sortedIndex = psVectorAlloc(numRows,PS_TYPE_U32); + sortedIndex = psVectorSortIndex(sortedIndex,indexColumnVector); + for(psS32 i = 0; i < numRows; i++ ) { + if(sortedIndex->data.U32[i] != i) { + sortNeeded = true; + break; + } + } + + // Check if it is necessary to sort value vectors + if(sortNeeded) { + // Allocate new array to contain sorted vectors + psArray* newValueArray = psArrayAlloc(numCols); + for(psS32 j = 0; j < numCols; j++) { + psS32 type = ((psVector*)(vectors->data[j]))->type.type; + newValueArray->data[j] = psVectorAlloc(numRows,type); + } + + // Populate new array/vectors with sorted values + for(psS32 i = 0; i < numRows; i++) { + // Populate new index vector + psU32 sortIndex = sortedIndex->data.U32[i]; + // For every column populate new value vectors + for(psS32 j=0; j < numCols; j++) { + COPY_VECTOR_VALUES(newValueArray->data[j],i,vectors->data[j], sortIndex) + } + } + // Assign new vector value to table + table->index = newValueArray->data[indexCol]; + // Assign new value vectors to table array + table->values = newValueArray; + // Assign indexCol + table->indexCol = indexCol; + // Assign validTo and validFrom values + UPDATE_VALID_TO_FROM(table) + + // Set return value + outputTable = table; + + } else { + // Index vector is already sorted + // Assign array vector specified by indexCol to table index vector + // and increment memory ref + table->index = vectors->data[indexCol]; + table->values = (psArray*)vectors; + psMemIncrRefCounter((psArray*)vectors); + + // Assign indexCol + table->indexCol = indexCol; + // Assign validTo and validFrom values + UPDATE_VALID_TO_FROM(table); + + // Set return value + outputTable = table; + } + + // Free sort vector + psFree(sortedIndex); + + return outputTable; +} + +long psLookupTableRead(psLookupTable* table) +{ + long numRows = 0; + psArray* vectors = NULL; + psLookupTable* outTable = NULL; + + // Check if the input table is NULL then return 0 + PS_ASSERT_PTR_NON_NULL(table,0); + + // Read vectors from file specified in table + vectors = psVectorsReadFromFile(table->filename, table->format); + + // Check for valid array after reading from file + if(vectors != NULL) { + + // Import vector into table + outTable = psLookupTableImport(table, vectors, table->indexCol); + + psFree(vectors); + + // Update the number of rows read if outTable is not NULL + if(outTable != NULL) { + numRows = table->index->n; + } + } + + // Return the number of lines read + return numRows; +} + +#define CONVERT_VALUE_TO_F64(VECTOR,INDEX,RESULT) \ +switch(VECTOR->type.type) { \ +case PS_TYPE_U8: \ + RESULT = (psF64)VECTOR->data.U8[INDEX]; \ + break; \ +case PS_TYPE_U16: \ + RESULT = (psF64)VECTOR->data.U16[INDEX]; \ + break; \ +case PS_TYPE_U32: \ + RESULT = (psF64)VECTOR->data.U32[INDEX]; \ + break; \ +case PS_TYPE_U64: \ + RESULT = (psF64)VECTOR->data.U64[INDEX]; \ + break; \ +case PS_TYPE_S8: \ + RESULT = (psF64)VECTOR->data.S8[INDEX]; \ + break; \ +case PS_TYPE_S16: \ + RESULT = (psF64)VECTOR->data.S16[INDEX]; \ + break; \ +case PS_TYPE_S32: \ + RESULT = (psF64)VECTOR->data.S32[INDEX]; \ + break; \ +case PS_TYPE_S64: \ + RESULT = (psF64)VECTOR->data.S64[INDEX]; \ + break; \ +case PS_TYPE_F32: \ + RESULT = (psF64)VECTOR->data.F32[INDEX]; \ + break; \ +case PS_TYPE_F64: \ + RESULT = VECTOR->data.F64[INDEX]; \ + break; \ +default: \ + RESULT = NAN; \ + break; \ +} + +#define CHECK_LOWER_UPPER_BOUND(TABLE,INDEX,COLUMN) \ +switch (TABLE->index->type.type) { \ +case PS_TYPE_S32: \ + if( (psS32)index < TABLE->index->data.S32[0] ) { \ + return NAN; \ + } \ + if( (psS32)index > TABLE->index->data.S32[numRows-1] ) { \ + return NAN; \ + } \ + break; \ +case PS_TYPE_S64: \ + if( (psS64)index < TABLE->index->data.S64[0] ) { \ + return NAN; \ + } \ + if( (psS64)index > TABLE->index->data.S64[numRows-1] ) { \ + return NAN; \ + } \ + break; \ +case PS_TYPE_F32: \ + if( (psF32)index < TABLE->index->data.F32[0] ) { \ + return NAN; \ + } \ + if( (psF32)index > TABLE->index->data.F32[numRows-1] ) { \ + return NAN; \ + } \ + break; \ +case PS_TYPE_F64: \ + if( index < TABLE->index->data.F64[0] ) { \ + return NAN; \ + } \ + if( index > TABLE->index->data.F64[numRows-1] ) { \ + return NAN; \ + } \ + break; \ +default: \ + return NAN; \ + break; \ +} + +double psLookupTableInterpolate(const psLookupTable *table, + double index, + long column) +{ + psU64 hiIdx = 0; + psU64 loIdx = 0; + long numRows = 0; + long numCols = 0; + psF64 out = 0.0; + psF64 denom = 0.0; + psF64 convertVal = 0.0; + psF64 tempVal = 0.0; + psVector *indexVec = NULL; + psVector *valuesVec = NULL; + psArray *values = NULL; + + // Check for NULL table + PS_ASSERT_PTR_NON_NULL(table,NAN); + + indexVec = table->index; + values = table->values; + numRows = table->index->n; + numCols = table->values->n; + PS_ASSERT_PTR_NON_NULL(indexVec,NAN); + PS_ASSERT_PTR_NON_NULL(values,NAN); + PS_ASSERT_INT_UNEQUAL(numRows, 0,NAN); + PS_ASSERT_INT_UNEQUAL(numCols, 0,NAN); + PS_ASSERT_INT_WITHIN_RANGE(column, 0, (int)(numCols-1), NAN); + + valuesVec = (psVector*)values->data[column]; + PS_ASSERT_PTR_NON_NULL(indexVec,NAN); + + // Verify the index is within the bounds of the table + CHECK_LOWER_UPPER_BOUND(table,index,column); + + // Find location in table where specified index is between to entries + CONVERT_VALUE_TO_F64(indexVec, 0, convertVal) + while(index > convertVal ) { + hiIdx++; + /* XXX: following is unreachable. + if(hiIdx >= numRows) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("High index too big, %" PRIu64 "."), hiIdx); + return NAN; + } + */ + CONVERT_VALUE_TO_F64(indexVec, hiIdx, convertVal) + } + + // Check for negative low index and generate error + loIdx = hiIdx--; + if(loIdx < 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Low index too small, %" PRIu64 "."), loIdx); + return NAN; + } + + // Perform linear interpolation to calculate return value + CONVERT_VALUE_TO_F64(indexVec, hiIdx, denom) + CONVERT_VALUE_TO_F64(indexVec, loIdx, convertVal); + denom -= convertVal; + if(fabs(denom) < FLT_EPSILON) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Divide by zero error during interpolation.")); + return NAN; + } else { + CONVERT_VALUE_TO_F64(valuesVec,hiIdx,tempVal) + CONVERT_VALUE_TO_F64(valuesVec,loIdx,convertVal) + tempVal -= convertVal; + CONVERT_VALUE_TO_F64(indexVec,loIdx,convertVal) + out = tempVal*(index-convertVal)/denom; + CONVERT_VALUE_TO_F64(valuesVec,loIdx,convertVal) + out += convertVal; + } + + return out; +} + +psVector* psLookupTableInterpolateAll(const psLookupTable *table, + double index) +{ + long numCols = 0; + psVector *outVector = NULL; + + // Error checks + PS_ASSERT_PTR_NON_NULL(table,NULL); + PS_ASSERT_PTR_NON_NULL(table->values,NULL); + numCols = table->values->n; + PS_ASSERT_INT_UNEQUAL(numCols, 0,NULL); + + // Create output vector + outVector = psVectorAlloc(numCols, PS_TYPE_F64); + + // Fill vectors with results and status of results + for(psU64 i=0; idata.F64[i] = psLookupTableInterpolate(table, index, i); + if(isnan(outVector->data.F64[i])) { + // Free allocated vector + psFree(outVector); + outVector = NULL; + // Break out of loop since error detected + break; + } + } + + return outVector; +} + Index: /branches/rel-1-1/psLib/src/types/psLookupTable.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psLookupTable.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psLookupTable.h (revision 12167) @@ -0,0 +1,184 @@ +/** @file psLookupTable.h +* +* @brief This file defines the structure and functions for table lookups. +* +* @author PAP, IfA +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 21:57:02 $ +* +* Copyright 2004 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifndef PS_LOOKUPTABLE_H +#define PS_LOOKUPTABLE_H + +/// @addtogroup DataContainer Data Containers +/// @{ + +#include "psType.h" +#include "psVector.h" +#include "psArray.h" +#include "psLogMsg.h" + + +/** Lookup table structure + * + * Holds table data read from external data files. + * + */ +typedef struct +{ + const char *filename; ///< Name of file with table + const char *format; ///< scanf-like format string for file + long indexCol; ///< Column of the index vector (starting at zero) + psVector *index; ///< Vector of independent index values + psArray *values; ///< Array of dependent table values corresponding to index values + const double validFrom; ///< Lower bound for rable read + const double validTo; ///< Upper bound for table read +} +psLookupTable; + + +/** Lookup table lookup status and error conditions + * + * Success, failure, and status conditions for table lookups. + */ +typedef enum { + PS_LOOKUP_SUCCESS = 0x0000, ///< Table lookup succeeded + PS_LOOKUP_PAST_TOP = 0x0101, ///< Lookup off top of table + PS_LOOKUP_PAST_BOTTOM = 0x0102, ///< Lookup off bottom of table + PS_LOOKUP_ERROR = 0x0104 ///< Any other type of lookup error +} psLookupStatusType; + + +/** Lookup table parse status and error conditions + * + * Success, failure, and status conditions for table parsing. + */ +typedef enum { + PS_PARSE_SUCCESS = 0x0000, ///< Table lookup succeeded + PS_PARSE_ERROR_TYPE = 0x0101, ///< Error parsing type + PS_PARSE_ERROR_VALUE = 0x0102, ///< Error parsing numerical value + PS_PARSE_ERROR_GENERAL = 0x0104 ///< Any other type of lookup error +}psParseErrorType; + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psLookupTable structure, + * false otherwise. + */ +bool psMemCheckLookupTable( + psPtr ptr ///< the pointer whose type to check +); + + +/** Allocator for psLookupTable struct + * + * Allocates a new psLookupTable struct. + * + * @return psLookupTable* New psLookupTable struct. + */ +#ifdef DOXYGEN +psLookupTable* psLookupTableAlloc( + const char *filename, ///< Name of file to read + const char *format, ///< scanf-like format string + long indexCol ///< Column of the index vector (starting at zero) +); +#else // ifdef DOXYGEN +psLookupTable* p_psLookupTableAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *filename, ///< Name of file to read + const char *format, ///< scanf-like format string + long indexCol ///< Column of the index vector (starting at zero) +); +#define psLookupTableAlloc(filename, format, indexCol) \ + p_psLookupTableAlloc(__FILE__, __LINE__, __func__, filename, format, indexCol) +#endif // ifdef DOXYGEN + + +/** Read vectors from file + * + * Read numeric vectors from ASCII text file + * + * @return psArray* New array of psVectors corresponding to the columns of the table + */ +psArray *psVectorsReadFromFile( + const char* filename, ///< File to be read + const char* format ///< scanf-like format string +); + + +/** Import arrays of vectors into a table + * + * Import array of vectors read from text file into a table structure + * + * @return psLookupTable* Lookup table structure with array vector data + */ +#ifdef DOXYGEN +psLookupTable *psLookupTableImport( + psLookupTable *table, ///< Lookup table into which to import + const psArray *vectors, ///< Array of vectors + long indexCol ///< Index of the index vector in the array of vectors +); +#else // ifdef DOXYGEN +psLookupTable *p_psLookupTableImport( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psLookupTable *table, ///< Lookup table into which to import + const psArray *vectors, ///< Array of vectors + long indexCol ///< Index of the index vector in the array of vectors +); +#define psLookupTableImport(table, vectors, indexCol) \ + p_psLookupTableImport(__FILE__, __LINE__, __func__, table, vectors, indexCol) +#endif // ifdef DOXYGEN + + +/** Read lookup table + * + * Reads a lookup table and fills corresponding psLookupTable struct. + * + * @return long: Number of valid lines read + */ +long psLookupTableRead( + psLookupTable *table ///< Table to read +); + + +/** Lookup and interpolate value from table. + * + * Interpolates value from table. Sets status bit for success or one of + * several possible failure conditions. + * + * @return double Interpolation value at index + */ +double psLookupTableInterpolate( + const psLookupTable *table, ///< Table with data + double index, ///< Value to be interpolated + long column ///< Column in table to be interpolated +); + + +/** Lookup and interpolate all values from table. + * + * Interpolates all values from table. Sets status bit for success or one of + * several possible failure conditions. + * + * @return psVector* Interpolation values calculated at index + */ +psVector* psLookupTableInterpolateAll( + const psLookupTable *table, ///< Table with data + double index ///< Value to be interpolated +); + + +/// @} +#endif // #ifndef PS_LOOKUPTABLE_H Index: /branches/rel-1-1/psLib/src/types/psMetadata.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadata.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadata.c (revision 12167) @@ -0,0 +1,1420 @@ +/** @file psMetadata.c + * + * + * @brief Contains metadata structures, enumerations and functions prototypes. + * + * This file defines metadata item, metadata type, metadata flags, metadata containers, and function + * prototypes necessary creating psLib metadata APIs + * + * @ingroup Metadata + * + * @author Robert DeSonia, MHPCC + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.152 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-09 01:26:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +/******************************************************************************/ +/* INCLUDE FILES */ +/******************************************************************************/ +#include +#include +#include + +#include "fitsio.h" +#include "psType.h" +#include "psMemory.h" +#include "psError.h" +#include "psAbort.h" +#include "psList.h" +#include "psHash.h" +#include "psVector.h" +#include "psMetadata.h" +#include "psLookupTable.h" +#include "psString.h" + +#include "psAssert.h" +#include "psLogMsg.h" +#include "psTrace.h" + +/******************************************************************************/ +/* DEFINE STATEMENTS */ +/******************************************************************************/ + +/** Maximum size of a string */ +#define MAX_STRING_LENGTH 1024 + +/******************************************************************************/ +/* TYPE DEFINITIONS */ +/******************************************************************************/ + +// None + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +static psS32 metadataId = 0; + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +static psMetadataItem* makeMetaMulti(psHash* table, + const char* key, + psMetadataItem* existing) +{ + + if (existing != NULL && existing->type == PS_DATA_METADATA_MULTI) { + return existing; + } + + // move any existing entry into a psList + psList* newList = psListAlloc(existing); + + psMetadataItem* item = psMetadataItemAlloc(key, + PS_DATA_METADATA_MULTI, + "", + newList); + + if (existing != NULL) { + psHashRemove(table,key); // take out the old entry + } + + psHashAdd(table, key, item); // put in the new entry + psMemDecrRefCounter(item); // get rid of extra reference + + // free local references of newly allocated items. + psFree(newList); + + return item; +} + +static void metadataItemFree(psMetadataItem* metadataItem) +{ + psDataType type; + + type = metadataItem->type; + + + psMemDecrRefCounter(metadataItem->name); + psMemDecrRefCounter(metadataItem->comment); + + if(!PS_DATA_IS_PRIMITIVE(type)) { + psFree(metadataItem->data.V); + } +} + +static void metadataIteratorFree(psMetadataIterator* iter) +{ + psFree(iter->iter); + + if (iter->regex != NULL) { + regfree(iter->regex); + psFree(iter->regex); + } +} + +static void metadataFree(psMetadata* metadata) +{ + psFree(metadata->list); + psFree(metadata->hash); +} + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +psMetadataItem* p_psMetadataItemAlloc(const char *file, + unsigned int lineno, + const char *func, + const char *name, + psDataType type, + const char *comment, + ...) +{ + va_list argPtr; + psMetadataItem* metadataItem = NULL; + + // Get the variable list parameters to pass to allocation function + va_start(argPtr, comment); + + // Call metadata item allocation + metadataItem = p_psMetadataItemAllocV(file, lineno, func, name, type, comment, argPtr); + + // Clean up stack after variable arguement has been used + va_end(argPtr); + + return metadataItem; +} + +bool psMemCheckMetadataItem(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)metadataItemFree ); +} + + +#define METADATAITEM_ALLOC_TYPE(NAME,TYPE,METATYPE) \ +psMetadataItem* psMetadataItemAlloc##NAME(const char* name, \ + const char* comment, \ + TYPE value) \ +{ \ + return psMetadataItemAlloc(name, METATYPE, comment, value); \ +} + +METADATAITEM_ALLOC_TYPE(Str,const char*,PS_DATA_STRING) +METADATAITEM_ALLOC_TYPE(F32,psF32,PS_DATA_F32) +METADATAITEM_ALLOC_TYPE(F64,psF64,PS_DATA_F64) +METADATAITEM_ALLOC_TYPE(S8,psS8,PS_DATA_S8) +METADATAITEM_ALLOC_TYPE(S16,psS16,PS_DATA_S16) +METADATAITEM_ALLOC_TYPE(S32,psS32,PS_DATA_S32) +METADATAITEM_ALLOC_TYPE(S64,psS64,PS_DATA_S64) +METADATAITEM_ALLOC_TYPE(U8,psU8,PS_DATA_U8) +METADATAITEM_ALLOC_TYPE(U16,psU16,PS_DATA_U16) +METADATAITEM_ALLOC_TYPE(U32,psU32,PS_DATA_U32) +METADATAITEM_ALLOC_TYPE(U64,psU64,PS_DATA_U64) +METADATAITEM_ALLOC_TYPE(Bool,bool,PS_DATA_BOOL) + +psMetadataItem* psMetadataItemAllocPtr(const char *name, + psDataType type, + const char *comment, + psPtr value) +{ + return (psMetadataItemAlloc(name, type, comment, value)); +} + + +psMetadataItem* p_psMetadataItemAllocV(const char *file, + unsigned int lineno, + const char *func, + const char *name, + psDataType type, + const char *comment, + va_list argPtr) +{ + psMetadataItem* metadataItem = NULL; + + + PS_ASSERT_PTR_NON_NULL(name,NULL); + + // Allocate metadata item + metadataItem = (psMetadataItem*) p_psAlloc(file, lineno, func, sizeof(psMetadataItem)); + metadataItem->data.V = NULL; + + // Set deallocator + psMemSetDeallocator(metadataItem, (psFreeFunc) metadataItemFree); + + // Allocate and set metadata item comment + if (comment == NULL) { + // Per SDRS, null isn't allowed, must use "" instead + metadataItem->comment = psStringCopy(""); + } else { + metadataItem->comment = psStringCopy(comment); + } + + // Set metadata item unique id + *(psS32 *)(&metadataItem->id) = ++metadataId; + + // Set metadata item type + metadataItem->type = type & PS_METADATA_TYPE_MASK; + + // Allocate and set metadata item name + metadataItem->name = psStringCopy(name); + + // Set metadata item value + switch(metadataItem->type) { + case PS_DATA_BOOL: + metadataItem->data.B = (bool)va_arg(argPtr, psS32); + break; + case PS_DATA_S8: + metadataItem->data.S8 = (psS8)va_arg(argPtr, psS32); + break; + case PS_DATA_S16: + metadataItem->data.S16 = (psS16)va_arg(argPtr, psS32); + break; + case PS_DATA_S32: + metadataItem->data.S32 = (psS32)va_arg(argPtr, psS32); + break; + case PS_DATA_S64: + metadataItem->data.S64 = (psS64)va_arg(argPtr, psS64); + break; + case PS_DATA_U8: + metadataItem->data.U8 = (psU8)va_arg(argPtr, psU32); + break; + case PS_DATA_U16: + metadataItem->data.U16 = (psU16)va_arg(argPtr, psU32); + break; + case PS_DATA_U32: + metadataItem->data.U32 = (psU32)va_arg(argPtr, psU32); + break; + case PS_DATA_U64: + metadataItem->data.U64 = (psU64)va_arg(argPtr, psU64); + break; + case PS_DATA_F32: + metadataItem->data.F32 = (psF32)va_arg(argPtr, psF64); + break; + case PS_DATA_F64: + metadataItem->data.F64 = (psF64)va_arg(argPtr, psF64); + break; + case PS_DATA_STRING: + // Perform copy of input strings + { + char *string = va_arg(argPtr, char *); + metadataItem->data.str = + string ? psStringNCopy(string, MAX_STRING_LENGTH) + : NULL; + } + break; + case PS_DATA_ARRAY: // psArray + case PS_DATA_BITSET: // psBitSet + case PS_DATA_CUBE: // psCube + case PS_DATA_FITS: // psFits + case PS_DATA_HASH: // psHash + case PS_DATA_HISTOGRAM: // psHistogram + case PS_DATA_IMAGE: // psImage + case PS_DATA_KERNEL: // psKernel + case PS_DATA_LIST: // psList + case PS_DATA_LOOKUPTABLE: // psLookupTable + case PS_DATA_METADATA: // psMetadata + case PS_DATA_METADATAITEM: // psMetadataItem + case PS_DATA_MINIMIZATION: // psMinimization + case PS_DATA_PIXELS: // psPixels + case PS_DATA_PLANE: // psPlane + case PS_DATA_PLANEDISTORT: // psPlaneDistort + case PS_DATA_PLANETRANSFORM: // psPlaneTransform + case PS_DATA_POLYNOMIAL1D: // psPolynomial1D + case PS_DATA_POLYNOMIAL2D: // psPolynomial2D + case PS_DATA_POLYNOMIAL3D: // psPolynomial3D + case PS_DATA_POLYNOMIAL4D: // psPolynomial4D + case PS_DATA_PROJECTION: // psProjection + case PS_DATA_REGION: // psRegion + case PS_DATA_SCALAR: // psScalar + case PS_DATA_SPHERE: // psSphere + case PS_DATA_SPHEREROT: // psSphereTransform + case PS_DATA_SPLINE1D: // psSpline1D + case PS_DATA_STATS: // psStats + case PS_DATA_TIME: // psTime + case PS_DATA_VECTOR: // psVector + case PS_DATA_UNKNOWN: // "other" + case PS_DATA_METADATA_MULTI: + // Copy of input data not performed due to variability of data types + metadataItem->data.V = psMemIncrRefCounter(va_arg(argPtr, psPtr)); + break; + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Specified psDataType, %d, is not supported."), type); + psFree(metadataItem); + metadataItem = NULL; + } + + return metadataItem; +} + +psMetadata* p_psMetadataAlloc(const char *file, + unsigned int lineno, + const char *func) +{ + psList* list = NULL; + psHash* hash = NULL; + psMetadata* metadata = NULL; + + // Allocate metadata + metadata = (psMetadata*) p_psAlloc(file, lineno, func, sizeof(psMetadata)); + // Set deallocator + psMemSetDeallocator(metadata, (psFreeFunc) metadataFree); + + // Allocate metadata's internal containers + list = (psList*) psListAlloc(NULL); + hash = (psHash*) psHashAlloc(10); + + metadata->list = list; + metadata->hash = hash; + + return metadata; +} + + +bool psMemCheckMetadata(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)metadataFree ); +} + + +psMetadataItem *p_psMetadataItemCopy(const char *file, + unsigned int lineno, + const char *func, + const psMetadataItem *in) +{ + PS_ASSERT_PTR_NON_NULL(in,NULL); + + psMetadataItem *newItem = NULL; // New metadata item, to be returned + + #define PS_METADATA_ITEM_COPY_CASE(NAME,TYPE) \ +case PS_DATA_##NAME: \ + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, PS_DATA_##NAME, in->comment, in->data.TYPE); \ + break; \ + + switch (in->type) { + // Simple types + PS_METADATA_ITEM_COPY_CASE(BOOL,B); + PS_METADATA_ITEM_COPY_CASE(S8,S8); + PS_METADATA_ITEM_COPY_CASE(S16,S16); + PS_METADATA_ITEM_COPY_CASE(S32,S32); + PS_METADATA_ITEM_COPY_CASE(S64,S64); + PS_METADATA_ITEM_COPY_CASE(U8,U8); + PS_METADATA_ITEM_COPY_CASE(U16,U16); + PS_METADATA_ITEM_COPY_CASE(U32,U32); + PS_METADATA_ITEM_COPY_CASE(U64,U64); + PS_METADATA_ITEM_COPY_CASE(F32,F32); + PS_METADATA_ITEM_COPY_CASE(F64,F64); + PS_METADATA_ITEM_COPY_CASE(STRING,V); // This will copy the string, not point at it. + case PS_DATA_VECTOR: { + PS_ASSERT_PTR_NON_NULL(in->data.V, NULL); + psVector *vecCopy = psVectorCopy(NULL, (psVector*)(in->data.V), + ((psVector*)(in->data.V))->type.type); + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, PS_DATA_VECTOR, in->comment, vecCopy); + psFree(vecCopy); // Drop reference + break; + } + case PS_DATA_TIME: { + psTime *timeCopy = NULL; + // pass through NULL values + if (in->data.V) { + timeCopy = psTimeCopy( (psTime*)(in->data.V) ); + if (timeCopy == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "Error copying time. Time skipped.\n"); + } + } + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, PS_DATA_TIME, in->comment, timeCopy); + if (timeCopy) { + psFree(timeCopy); // Drop reference + } + break; + } + case PS_DATA_METADATA: { + // Metadata: copy the next level and stuff that in too + psMetadata *metadata = psMetadataCopy(NULL, in->data.md); + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, PS_DATA_METADATA, in->comment, metadata); + psFree(metadata); // Drop reference + break; + } + case PS_DATA_REGION: { + psRegion *region = in->data.V; // The region + psRegion *new = psRegionAlloc(region->x0, region->x1, region->y0, region->y1); // Copy of the region + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, PS_DATA_REGION, in->comment, new); + psFree(new); // Drop reference + break; + } + default: + // Other kinds of pointers + psLogMsg(__func__, PS_LOG_WARN, "Copying a pointer in the metadata item: %x\n", in->type); + newItem = p_psMetadataItemAlloc(file, lineno, func, in->name, in->type, in->comment, in->data.V); + break; + } + + return newItem; +} + +psMetadata *p_psMetadataCopy(const char *file, + unsigned int lineno, + const char *func, + psMetadata *out, + const psMetadata *in) +{ + + if (in == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, "psMetadataCopy: 'in' cannot be NULL"); + return NULL; + } + + // PS_ASSERT_PTR_NON_NULL(in->list,NULL); + if (in->list == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, "psMetadataCopy: 'in' has NULL list"); + return NULL; + } + bool errorOccurred = false; + bool outAlloced = false; + if (out == NULL) { + out = p_psMetadataAlloc(file, lineno, func); + outAlloced = true; + } + psMetadataIterator *iter = psMetadataIteratorAlloc(in, PS_LIST_HEAD, NULL); + psMetadataItem *inItem = NULL; + while ((inItem = psMetadataGetAndIncrement(iter))) { + // Need to look for MULTI, which won't be picked up using the iterator. + psMetadataItem *multiCheckItem = psMetadataLookup(in, inItem->name); + unsigned int flag = PS_META_REPLACE; // Flag to indicate MULTI; otherwise, replace + if (multiCheckItem->type == PS_DATA_METADATA_MULTI) { + psTrace("psLib.types", 10, "MULTI: %s (%s)\n", inItem->name, inItem->comment); + flag = PS_META_DUPLICATE_OK; + } + psTrace("psLib.types", 5, "Copying %s (%s)...\n", inItem->name, inItem->comment); + + // Copy the item and add it on + psMetadataItem *newItem = psMetadataItemCopy(inItem); // Copied item + if (!psMetadataAddItem(out, newItem, PS_LIST_TAIL, flag)) { + psErrorStackPrint(stderr, "Error copying %s (%s) in the metadata\n", inItem->name, + inItem->comment); + if (outAlloced) { + psFree(out); + psFree(newItem); + psFree(iter); + return NULL; + } else { + errorOccurred = true; + } + } + psFree(newItem); // Drop reference + } + psFree(iter); + + if (errorOccurred) { + return NULL; + } + + return out; +} + +// may need to extend this to change the keyname in the copy +bool psMetadataItemSupplement(psMetadata *out, + const psMetadata *in, + const char *key) +{ + PS_ASSERT_METADATA_NON_NULL(in, false); + PS_ASSERT_METADATA_NON_NULL(out, false); + PS_ASSERT_STRING_NON_EMPTY(key, false); + + psMetadataItem *item = psMetadataLookup(in, key); + if (!item) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Could not find '%s' in metadata.\n", key); + return false; + } + if (!psMetadataAddItem(out, item, PS_LIST_TAIL, PS_META_REPLACE) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Could not add %s to metadata.\n", key); + return false; + } + + return true; +} + + +bool psMetadataAddItem(psMetadata *md, + const psMetadataItem *item, + int location, + psS32 flags) +{ + char * key = NULL; + psHash *mdTable = NULL; + psList *mdList = NULL; + psMetadataItem *existingEntry = NULL; + + PS_ASSERT_PTR_NON_NULL(md,false); + PS_ASSERT_PTR_NON_NULL(md->hash,false); + PS_ASSERT_PTR_NON_NULL(md->list,false); + PS_ASSERT_PTR_NON_NULL(item,false); + PS_ASSERT_PTR_NON_NULL(item->name,false); + + mdTable = md->hash; + mdList = md->list; + key = item->name; + + // See if key is already in table + existingEntry = (psMetadataItem*)psHashLookup(mdTable, key); + + if (item->type == PS_DATA_METADATA_MULTI) { + // the incoming entry is PS_DATA_METADATA_MULTI + + //Shouldn't have a second reference to the same MULTI in a single Metadata! + if (item == existingEntry) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Cannot have 2 references to the same MULTI in a single Metadata!"); + return false; + } + + // force the hash entry to be PS_DATA_METADATA_MULTI + existingEntry = makeMetaMulti(mdTable,key,existingEntry); + + // add all the items in the incoming entry to metadata + psList* list = item->data.list; + if (list != NULL) { + psListIterator* iter = psListIteratorAlloc(list,PS_LIST_HEAD,true); + psMetadataItem* listItem; + while ((listItem=(psMetadataItem*)psListGetAndIncrement(iter)) != NULL) { + psMetadataAddItem(md,listItem,location,flags); + } + psFree(iter); + } + + return true; // all done. + } + + // how the item is added to the hash depends on prior existence, flags, etc. + if(existingEntry != NULL) { // prior existence + if (existingEntry->type == PS_DATA_METADATA_MULTI || (flags & PS_META_DUPLICATE_OK) != 0) { + // duplicate entries allowed - add another entry. + + // make sure the existing entry is PS_DATA_METADATA_MULTI + existingEntry = makeMetaMulti(mdTable,key,existingEntry); + + // add to the hash's list of duplicate entries + if (! psListAdd(existingEntry->data.list, PS_LIST_TAIL, (psPtr)item) ) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to add metadata item, %s, to metadata collection list."), + key); + return false; + } + } else if ((flags & PS_META_REPLACE) != 0) { + // replace entry instead of creating a duplicate entry. + + // remove the existing entry from metadata + psMetadataRemoveKey(md, key); + + // treat as if new (added to list below) + /* The following is unneeded. HashAdd can't return false with non-null inputs. + if(!psHashAdd(mdTable, key, (psPtr)item)) { + psError(PS_ERR_UNKNOWN,false, + _("Failed to add metadata item, %s, to items table."),key); + return false; + } + */ + psHashAdd(mdTable, key, (psPtr)item); + + // Generate warning that item has been replaced + // psLogMsg(__func__,PS_LOG_WARN,"Metadata item %s has been replaced", + // existingEntry->name); + } else { + // default is to error on duplicate entry. + if ((flags & PS_META_NO_REPLACE) != 0) { + return true; + } + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Duplicate metadata item name: %s is not allowed. " + "Use a psMetadataFlags option to allow such action."), item->name); + return false; + } + } else { + // OK, this is a new item. + + // Node doesn't exist - Add new metadata item to metadata collection's hash + /* The following is unneeded. HashAdd can't return false with non-null inputs. + + if(!psHashAdd(mdTable, key, (psPtr)item)) { + psError(PS_ERR_UNKNOWN,false, + _("Failed to add metadata item, %s, to items table."),key); + return false; + } + */ + psHashAdd(mdTable, key, (psPtr)item); + // Create a multi, if required + if (flags & PS_META_DUPLICATE_OK) { + makeMetaMulti(mdTable,key,(psMetadataItem*)item); // Casting away const! + } + } + + if(!psListAdd(mdList, location, (psPtr)item)) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to add metadata item, %s, to metadata collection list."), key); + return false; + } + + return true; +} + +bool psMetadataAdd(psMetadata *md, + long location, + const char *name, + int format, + const char *comment,...) +{ + PS_ASSERT_PTR_NON_NULL(md,false); + PS_ASSERT_PTR_NON_NULL(md->list,false); + va_list argPtr; + + va_start(argPtr, comment); + bool result = psMetadataAddV(md,location,name,format,comment,argPtr); + va_end(argPtr); + + return result; +} + +bool psMetadataAddV(psMetadata *md, + long location, + const char *name, + int format, + const char *comment, + va_list list) +{ + PS_ASSERT_PTR_NON_NULL(md,false); + PS_ASSERT_PTR_NON_NULL(md->list,false); + psMetadataItem* metadataItem = NULL; + + metadataItem = psMetadataItemAllocV(name, format & PS_METADATA_TYPE_MASK, comment, list); + + if (!psMetadataAddItem(md, metadataItem, location, format & PS_METADATA_FLAGS_MASK)) { + psError(PS_ERR_UNKNOWN,false,_("Failed to add metadata item to metadata collection list.")); + psFree(metadataItem); + return false; + } + // Decrement reference count, since the metadata item is now in metadata collection and no longer needed + psFree(metadataItem); + + return true; +} + +#define METADATA_ADD_TYPE(NAME,TYPE,METATYPE) \ +bool psMetadataAdd##NAME(psMetadata* md, long where, const char* name, \ + int format, const char* comment, TYPE value) { \ + return psMetadataAdd(md, where, name, format | METATYPE, comment, value); \ +} + +METADATA_ADD_TYPE(Bool,bool,PS_DATA_BOOL) +METADATA_ADD_TYPE(S8,psS8,PS_DATA_S8) +METADATA_ADD_TYPE(S16,psS16,PS_DATA_S16) +METADATA_ADD_TYPE(S32,psS32,PS_DATA_S32) +METADATA_ADD_TYPE(S64,psS64,PS_DATA_S64) +METADATA_ADD_TYPE(U8,psU8,PS_DATA_U8) +METADATA_ADD_TYPE(U16,psU16,PS_DATA_U16) +METADATA_ADD_TYPE(U32,psU32,PS_DATA_U32) +METADATA_ADD_TYPE(U64,psU64,PS_DATA_U64) +METADATA_ADD_TYPE(F32,psF32,PS_DATA_F32) +METADATA_ADD_TYPE(F64,psF64,PS_DATA_F64) +METADATA_ADD_TYPE(List,psList*,PS_DATA_LIST) +METADATA_ADD_TYPE(Str,const char*,PS_DATA_STRING) +METADATA_ADD_TYPE(Vector,psVector*,PS_DATA_VECTOR) +METADATA_ADD_TYPE(Image,psImage*,PS_DATA_IMAGE) +METADATA_ADD_TYPE(Hash,psHash*,PS_DATA_HASH) +METADATA_ADD_TYPE(LookupTable,psLookupTable*,PS_DATA_LOOKUPTABLE) +METADATA_ADD_TYPE(Metadata,psMetadata*,PS_DATA_METADATA) +METADATA_ADD_TYPE(Array,psArray*,PS_DATA_ARRAY) +METADATA_ADD_TYPE(Time,psTime*,PS_DATA_TIME) +METADATA_ADD_TYPE(Unknown,psPtr,PS_DATA_UNKNOWN) + +bool psMetadataAddPtr(psMetadata* md, long where, const char* name, + psDataType type, const char* comment, psPtr value) +{ + return psMetadataAdd(md, where, name, type, comment, value); +} + + + +// Remove by key name +bool psMetadataRemoveKey(psMetadata *md, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + + PS_ASSERT_PTR_NON_NULL(md->list, false); + psList* mdList = md->list; + + PS_ASSERT_PTR_NON_NULL(md->hash,false); + psHash* mdTable = md->hash; + + PS_ASSERT_PTR_NON_NULL(key, false); + PS_ASSERT_INT_POSITIVE(strlen(key), false); + + psMetadataItem* entry = psHashLookup(mdTable,key); + if (entry == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to remove metadata item, %s, from metadata table."), key); + return false; + } + if (entry->type == PS_DATA_METADATA_MULTI) { + psMetadataItem* listItem; + psListIterator* iter = psListIteratorAlloc( + entry->data.list, + PS_LIST_HEAD,true); + while ((listItem=psListGetAndIncrement(iter)) != NULL) { + psListRemoveData(mdList, listItem); + } + psFree(iter); + psHashRemove(mdTable,key); + } else { + psListRemoveData(mdList, entry); + psHashRemove(mdTable, key); + } + + return true; +} + + +// Remove by index +bool psMetadataRemoveIndex(psMetadata *md, + long location) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + + PS_ASSERT_PTR_NON_NULL(md->list, false); + psList* mdList = md->list; + + PS_ASSERT_PTR_NON_NULL(md->hash,false); + psHash* mdTable = md->hash; + + psMetadataItem* entry = psListGet(mdList, location); + if (entry == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Could not find metadata item at index %ld."), location); + return false; + } + const char *key = entry->name; + + if (key == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to remove metadata item, at index %ld, from metadata list."), + location); + return false; + } + + psMetadataItem* tableItem = psHashLookup(mdTable, key); + if (tableItem == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to remove metadata item, %s, from metadata table."), key); + return false; + } + + if (tableItem->type == PS_DATA_METADATA_MULTI) { + // multiple entries with same key, remove just the specified one + psListRemoveData(tableItem->data.list, entry); + } else { + //Tested below. psHashRemove can't return false here. + psHashRemove(mdTable, key); + } + psListRemove(mdList, location); + + return true; +} + +psMetadataItem* psMetadataLookup(const psMetadata *md, + const char *key) +{ + psHash* mdTable = NULL; + psMetadataItem* entry = NULL; + + + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->hash,NULL); + PS_ASSERT_PTR_NON_NULL(key,NULL); + + mdTable = md->hash; + entry = (psMetadataItem*)psHashLookup(mdTable, key); + + return entry; +} + +void* psMetadataLookupPtr(bool *status, + const psMetadata *md, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + psMetadataItem *metadataItem = NULL; + + if (status) { + *status = true; + } + + metadataItem = psMetadataLookup(md, key); + if(metadataItem == NULL) { + if (status) { + *status = false; + } + return NULL; + } + if (metadataItem->type == PS_DATA_METADATA_MULTI) { + // if multiple keys found, use the first. + // metadataItem = (psMetadataItem*)((metadataItem->data.list)->head); + metadataItem = (psMetadataItem*)(metadataItem->data.list->head->data); + if (status) { + *status = true; + } + } + + if(PS_DATA_IS_PRIMITIVE(metadataItem->type)) { + if (status) { + *status = false; + } + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psDataType, %d, is not supported."), + metadataItem->type); + return NULL; + } else { + return metadataItem->data.V; + } +} + +#define psMetadataLookupNumTYPE(TYPE) \ +ps##TYPE psMetadataLookup##TYPE(bool *status, const psMetadata *md, const char *key) \ +{ \ + psMetadataItem *metadataItem = NULL; \ + ps##TYPE value = 0; \ + \ + if (status) { \ + *status = true; \ + } \ + \ + metadataItem = psMetadataLookup(md, key); \ + if(metadataItem == NULL) { \ + if (status) { \ + *status = false; \ + } \ + return 0; \ + } \ + if (metadataItem->type == PS_DATA_METADATA_MULTI) { \ + /* if multiple keys found, use the first. */ \ + metadataItem = (psMetadataItem*)((metadataItem->data.list)->head); \ + } \ + \ + switch (metadataItem->type) { \ + case PS_DATA_S8: \ + value = (ps##TYPE)metadataItem->data.S8; \ + break; \ + case PS_DATA_S16: \ + value = (ps##TYPE)metadataItem->data.S16; \ + break; \ + case PS_DATA_S32: \ + value = (ps##TYPE)metadataItem->data.S32; \ + break; \ + case PS_DATA_S64: \ + value = (ps##TYPE)metadataItem->data.S64; \ + break; \ + case PS_DATA_U8: \ + value = (ps##TYPE)metadataItem->data.U8; \ + break; \ + case PS_DATA_U16: \ + value = (ps##TYPE)metadataItem->data.U16; \ + break; \ + case PS_DATA_U32: \ + value = (ps##TYPE)metadataItem->data.U32; \ + break; \ + case PS_DATA_U64: \ + value = (ps##TYPE)metadataItem->data.U64; \ + break; \ + case PS_DATA_F32: \ + value = (ps##TYPE)metadataItem->data.F32; \ + break; \ + case PS_DATA_F64: \ + value = (ps##TYPE)metadataItem->data.F64; \ + break; \ + case PS_DATA_BOOL: \ + if (metadataItem->data.B) { \ + value = 1; \ + } \ + break; \ + default: \ + /* if you get to this point, the value is not a number. */ \ + if (status) { \ + *status = false; \ + } \ + break; \ + } \ + \ + /* psFree(metadataItem); currently, the lookup doesn't increment the ref count */ \ + return value; \ +} + +psMetadataLookupNumTYPE(F32) +psMetadataLookupNumTYPE(F64) +psMetadataLookupNumTYPE(S8) +psMetadataLookupNumTYPE(S16) +psMetadataLookupNumTYPE(S32) +psMetadataLookupNumTYPE(S64) +psMetadataLookupNumTYPE(U8) +psMetadataLookupNumTYPE(U16) +psMetadataLookupNumTYPE(U32) +psMetadataLookupNumTYPE(U64) +psMetadataLookupNumTYPE(Bool) + +psMetadataItem* psMetadataGet(const psMetadata *md, + int location) +{ + psMetadataItem* entry = NULL; + + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + + entry = (psMetadataItem*) psListGet(md->list, location); + if (entry == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, _("Could not find metadata item at index %d."), location); + return NULL; + } + + return entry; +} + +// XXX should md be const? +psMetadataIterator* p_psMetadataIteratorAlloc(const char *file, + unsigned int lineno, + const char *func, + const psMetadata* md, + long location, + const char* regex) +{ + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + + psMetadataIterator* newIter = p_psAlloc(file, lineno, func, sizeof(psMetadataIterator)); + psMemSetDeallocator(newIter, (psFreeFunc) metadataIteratorFree); + + newIter->iter = psListIteratorAlloc(md->list, location, false); + + if (regex) { + newIter->regex = psAlloc(sizeof(regex_t)); + int regRtn = regcomp(newIter->regex, regex, 0); + if (regRtn != 0) { + char errMsg[256]; + regerror(regRtn, newIter->regex, errMsg, 256); + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified regular expression is invalid. %s."), + errMsg); + psFree(newIter); + return NULL; + } + if (!psMetadataIteratorSet(newIter, location)) { + psError(PS_ERR_UNKNOWN, false, "Unable to set location=%ld for metadata iterator.\n", location); + psFree(newIter); + return NULL; + } + } else { + newIter->regex = NULL; + } + + return newIter; +} + +bool psMetadataIteratorSet(psMetadataIterator* iterator, + long location) +{ + PS_ASSERT_PTR_NON_NULL(iterator, NULL); + psListIterator *listIter = iterator->iter; + PS_ASSERT_PTR_NON_NULL(listIter, NULL); + + regex_t *regex = iterator->regex; + + // handle trivial case where no regex subsetting is required. + if (regex == NULL) { + return psListIteratorSet(listIter, location); + } + + // If there's a regex, then we need to count into the list. + // We count ONLY those entries that match the regex + + // Here we count in from the tail + if (location < 0) { + psListIteratorSet(listIter, PS_LIST_TAIL); + psMetadataItem *item; // Item from iteration + int match = 0; // Match number + while (listIter->cursor && (item = listIter->cursor->data)) { + if (regexec(regex, item->name, 0, NULL, 0) == 0) { + // this key is a match + match--; + if (match == location) { + break; + } + } + (void)psListGetAndDecrement(listIter); + } + return (match == location); + } + + // Here we count in from the head + psListIteratorSet(listIter, PS_LIST_HEAD); + psMetadataItem *item; // Item from iteration + int match = -1; // Match number + while (listIter->cursor && (item = listIter->cursor->data)) { + if (regexec(regex, item->name, 0, NULL, 0) == 0) { + // this key is a match + match++; + if (match == location) { + break; + } + } + (void)psListGetAndIncrement(listIter); + } + return (match == location); +} + +psMetadataItem* psMetadataGetAndIncrement(psMetadataIterator* iterator) +{ + PS_ASSERT_PTR_NON_NULL(iterator,NULL); + psListIterator* listIter = iterator->iter; + PS_ASSERT_PTR_NON_NULL(listIter,NULL); + + regex_t* regex = iterator->regex; + + // handle trivial case where no regex subsetting is required. + if (regex == NULL) { + return (psMetadataItem*)psListGetAndIncrement(listIter); + } + + // Iterate until we find something matching the regex + psMetadataItem *newItem; // New MD item from iteration + while ((newItem = psListGetAndIncrement(listIter))) { + if (regexec(regex, newItem->name, 0, NULL, 0) == 0) { + // this key is a match + break; + } + } + return newItem; +} + +psMetadataItem* psMetadataGetAndDecrement(psMetadataIterator* iterator) +{ + PS_ASSERT_PTR_NON_NULL(iterator, NULL); + psListIterator* listIter = iterator->iter; + PS_ASSERT_PTR_NON_NULL(listIter, NULL); + + regex_t* regex = iterator->regex; + + // handle trivial case where no regex subsetting is required. + if (regex == NULL) { + return (psMetadataItem*)psListGetAndDecrement(listIter); + } + + // Iterate until we find something matching the regex + psMetadataItem *newItem; // New MD item from iteration + while ((newItem = psListGetAndDecrement(listIter))) { + if (regexec(regex, newItem->name, 0, NULL, 0) == 0) { + // this key is a match + break; + } + } + return newItem; +} + +psMetadata *psMetadataLookupMetadata(bool *status, + const psMetadata *md, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + psMetadataItem *item = psMetadataLookup((psMetadata*)md, key); // The metadata with instruments + psMetadata *value = NULL; // The value to return + if (!item) { + // The given key isn't in the metadata + if (status) { + *status = false; + } else { + psError(PS_ERR_IO, true, "Couldn't find %s in the metadata.\n", key); + } + } else if (item->type != PS_DATA_METADATA) { + // The value at the key isn't metadata + if (status) { + *status = false; + } else { + psLogMsg(__func__, PS_LOG_WARN, "%s isn't of type PS_DATA_META, as expected.\n", key); + } + // value = NULL; + } else { + // We have the requested metadata + if (status) { + *status = true; + } + value = item->data.md; // The requested metadata + } + return value; +} + +psTime *psMetadataLookupTime(bool *status, + const psMetadata *md, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + + psMetadataItem *item = psMetadataLookup((psMetadata*)md, key); + if (!item) { + // The given key isn't in the metadata + if (status) { + *status = false; + } else { + psError(PS_ERR_IO, true, "Couldn't find %s in the metadata.\n", key); + } + return NULL; + } + + if (item->type != PS_DATA_TIME) { + // The value at the key isn't metadata + if (status) { + *status = false; + } else { + psLogMsg(__func__, PS_LOG_WARN, "%s isn't of type PS_DATA_TIME, as expected.\n", key); + } + return NULL; + } + + // We have the requested metadata + if (status) { + *status = true; + } + + return item->data.V; +} + + +psString psMetadataLookupStr(bool *status, + const psMetadata *md, + const char *key) +{ + PS_ASSERT_PTR_NON_NULL(md,NULL); + PS_ASSERT_PTR_NON_NULL(md->list,NULL); + psMetadataItem *item = psMetadataLookup((psMetadata*)md, key); // The metadata with instruments + // char *value = NULL; // The value to return + psString value = NULL; + if (!item) { + // The given key isn't in the metadata + if (status) { + *status = false; + } else { + psError(PS_ERR_IO, true, "Couldn't find %s in the metadata.\n", key); + } + } else if (item->type != PS_DATA_STRING) { + // The value at the key isn't of the desired type + if (status) { + *status = false; + } else { + psLogMsg(__func__, PS_LOG_WARN, "%s isn't of type PS_DATA_STRING, as expected.\n", key); + } + // value = NULL; + } else { + // We have the requested metadata + if (status) { + *status = true; + } + value = item->data.V; + } + return value; +} + + +bool psMetadataPrint(FILE *fd, + const psMetadata *md, + int level) +{ + PS_ASSERT_PTR_NON_NULL(md,false); + if (fd == NULL) { + fd = stdout; + } else { + if ( fprintf(fd, "\n") < 0 ) { + psError(PS_ERR_IO, true, + "Invalid file pointer in psMetadataPrint. Could not write to fd.\n"); + return false; + } + } + + psErrorClear(); // we're going to _append_ errors to the stack + bool noErrors = true; // have see seen any errors? + + // Casting away const --- the addition of an iterator should not be considered an invasion of "const". + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item = NULL; // Item from metadata + while ( (item = psMetadataGetAndIncrement(iter)) ) { + //So that unsupported types are not printed here, adding a switch statement + switch(item->type) { + case PS_DATA_STRING: + case PS_DATA_BOOL: + case PS_DATA_S8: + case PS_DATA_S16: + case PS_DATA_S32: + case PS_DATA_S64: + case PS_DATA_U8: + case PS_DATA_U16: + case PS_DATA_U32: + case PS_DATA_U64: + case PS_DATA_F32: + case PS_DATA_F64: + case PS_DATA_METADATA: + case PS_DATA_REGION: + case PS_DATA_LIST: + case PS_DATA_TIME: + case PS_DATA_VECTOR: + // Indent... + // fprintf(fd, "\n"); + for (int i = 0; i < level; i++) { + fprintf(fd, " "); + } + fprintf(fd, "%s", item->name); + if (item->comment && strlen(item->comment) > 0) { + fprintf(fd, " (%s)", item->comment); + } + fprintf(fd, ": "); + break; + case PS_DATA_UNKNOWN: + default: + break; + } + switch (item->type) { + case PS_DATA_STRING: + fprintf(fd, "%s\n", item->data.str); + break; + case PS_DATA_BOOL: + if (item->data.B) { + fprintf(fd, "True\n"); + } else { + fprintf(fd, "False\n"); + } + break; + case PS_DATA_S8: + fprintf(fd, "%d\n", item->data.S8); + break; + case PS_DATA_S16: + fprintf(fd, "%d\n", item->data.S16); + break; + case PS_DATA_S32: + fprintf(fd, "%d\n", item->data.S32); + break; + case PS_DATA_S64: + fprintf(fd, "%jd\n", item->data.S64); + break; + case PS_DATA_U8: + fprintf(fd, "%u\n", item->data.U8); + break; + case PS_DATA_U16: + fprintf(fd, "%u\n", item->data.U16); + break; + case PS_DATA_U32: + fprintf(fd, "%u\n", item->data.U32); + break; + case PS_DATA_U64: + fprintf(fd, "%ju\n", item->data.U64); + break; + case PS_DATA_F32: + fprintf(fd, "%f\n", item->data.F32); + break; + case PS_DATA_F64: + fprintf(fd, "%f\n", item->data.F64); + break; + case PS_DATA_METADATA: + // fprintf(fd, "\n"); + psMetadataPrint(fd, item->data.V, level + 1); + for (int i = 0; i < level; i++) { + fprintf(fd, " "); + } + fprintf(fd, "%s -- END\n", item->name); + break; + case PS_DATA_REGION: { + psString region = psRegionToString(*(psRegion*)item->data.V); + fprintf(fd, "%s\n", region); + psFree(region); + break; + } + case PS_DATA_LIST: + fprintf(fd, "\n", ((psList*)item->data.V)->n); + break; + case PS_DATA_TIME: { + psString time = psTimeToISO(item->data.V); + fprintf(fd, "%s\n", time); + psFree(time); + break; + } + case PS_DATA_VECTOR: { + psVector *vector = item->data.V; + switch (vector->type.type) { + case PS_DATA_U8: + fprintf(fd, "U8 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%u ", vector->data.U8[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_U16: + fprintf(fd, "U16 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%u ", vector->data.U16[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_U32: + fprintf(fd, "U32 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%u ", vector->data.U32[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_U64: + fprintf(fd, "U64 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%ju ", vector->data.U64[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_S8: + fprintf(fd, "S8 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%d ", vector->data.S8[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_S16: + fprintf(fd, "S16 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%d ", vector->data.S16[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_S32: + fprintf(fd, "S32 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%d ", vector->data.S32[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_S64: + fprintf(fd, "S64 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%jd ", vector->data.S64[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_F32: + fprintf(fd, "F32 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%f ", vector->data.F32[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_F64: + fprintf(fd, "F64 "); + for (int i = 0; i < vector->n; i++) { + fprintf(fd, "%f ", vector->data.F64[i]); + } + fprintf(fd, "\n"); + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psDataType, %d, is not supported."), vector->type.type); + psFree(iter); + fprintf(fd, "\n"); + return false; + } + // fprintf(fd, "\n"); + break; + } + default: + // fprintf(fd, "\n"); + psError(PS_ERR_IO, false, "Non-printable metadata type for \"%s\": %x\n", + item->name, item->type); + noErrors = false; + break; + } + // fprintf(fd, "\n"); + } + // fprintf(fd, "\n"); + psFree(iter); + + return noErrors; +} Index: /branches/rel-1-1/psLib/src/types/psMetadata.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadata.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadata.h (revision 12167) @@ -0,0 +1,1217 @@ +/** @file psMetadata.h +* +* @brief Contains metadata struuctures, enumerations and functions prototypes +* +* This file defines metadata item, metadata type, metadata flags, metadata containers, and function +* prototypes necessary creating psLib metadata APIs +* +* @author Robert DeSonia, MHPCC +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.98 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-09 01:26:00 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#ifndef PS_METADATA_H +#define PS_METADATA_H + +/// @addtogroup DataContainer Data Containers +/// @{ + +#include +#include +#include +#include + +#include "psHash.h" +#include "psList.h" +#include "psTime.h" +#include "psLookupTable.h" + +#define PS_DATA_IS_PRIMITIVE(TYPE) \ +(TYPE == PS_DATA_S8 || \ + TYPE == PS_DATA_S16 || \ + TYPE == PS_DATA_S32 || \ + TYPE == PS_DATA_S64 || \ + TYPE == PS_DATA_U8 || \ + TYPE == PS_DATA_U16 || \ + TYPE == PS_DATA_U32 || \ + TYPE == PS_DATA_U64 || \ + TYPE == PS_DATA_F32 || \ + TYPE == PS_DATA_F64 || \ + TYPE == PS_DATA_BOOL) + +#define PS_DATA_PRIMITIVE_TYPE(DATATYPE) ( \ + (DATATYPE==PS_DATA_S8 || DATATYPE==PS_DATA_S16 || \ + DATATYPE==PS_DATA_S32 || DATATYPE==PS_DATA_S64 || DATATYPE==PS_DATA_U8 || \ + DATATYPE==PS_DATA_U16 || DATATYPE==PS_DATA_U32 || DATATYPE==PS_DATA_U64 || \ + DATATYPE==PS_DATA_F32 || DATATYPE==PS_DATA_F64 || DATATYPE==PS_DATA_BOOL) ? DATATYPE : 0) + + +/** Option flags for psMetadata functions + * + * Enumeration for the modification of the behaviour in psMetadataAddItem. + * + * @see psMetadataAddItem + */ +typedef enum { + PS_META_DEFAULT = 0, ///< default behaviour (duplicate entry is an error) + PS_META_REPLACE = 0x1000000, ///< allow entry to be replaced + PS_META_NO_REPLACE = 0x2000000, ///< duplicate entry is silently skipped + PS_META_DUPLICATE_OK = 0x4000000, ///< allow duplicate entries + PS_META_NULL = 0x8000000 ///< psMetadataItem.data is a NULL value +} psMetadataFlags; + +#define PS_METADATA_FLAGS_MASK 0xFF000000 +#define PS_METADATA_TYPE_MASK 0x00FFFFFF + + +/** Metadata data structure. + * + * Struct for holding metadata items. Metadata items are held in two + * containers. The first employs a doubly-linked list to preserve the order + * of the metadata. The second container employs a hash table which + * allows fast lookup when given a metadata keyword. + */ +typedef struct +{ + psList* list; ///< Metadata in linked-list + psHash* hash; ///< Metadata in a hash table + void *lock; ///< Optional lock for thread safety +} +psMetadata; + + +/** Metadata iterator + * + * Iterator for metadata. + */ +typedef struct +{ + psListIterator* iter; ///< iterator for the psMetadata's psList + regex_t* regex; ///< the subsetting regular expression +} +psMetadataIterator; + + +/** Metadata item data structure. + * + * Struct for maintaining metadata items of varying types. It also contains + * information about the item name, flags, comments, and other items with the same name. + */ +typedef struct +{ + const psS32 id; ///< Unique ID for metadata item. + psString name; ///< Name of metadata item. + psDataType type; ///< Type of metadata item. + union { + bool B; ///< boolean data + psS8 S8; ///< Signed 8-bit integer data. + psS16 S16; ///< Signed 16-bit integer data. + psS32 S32; ///< Signed 32-bit integer data. + psS64 S64; ///< Signed 64-bit integer data. + psU8 U8; ///< Unsigned 8-bit integer data. + psU16 U16; ///< Unsigned 16-bit integer data. + psU32 U32; ///< Unsigned 32-bit integer data. + psU64 U64; ///< Unsigned 64-bit integer data. + psF32 F32; ///< Single-precision float data. + psF64 F64; ///< Double-precision float data. + psList *list; ///< List data. + psMetadata *md; ///< Metadata data. + psString str; ///< string data + psPtr V; ///< Pointer to other type of data. + } data; ///< Union for data types. + psString comment; ///< Optional comment ("", not NULL). +} +psMetadataItem; + + +/** Create a metadata item. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. The name argument specifies the name to use for this item, and + * may include sprintf formatting codes. The format entry specifies both + * the metadata type and optional flags and is created by bit-wise or of the + * appropriate type and flag. The comment argument is a fixed string used to + * comment the metadata item. The arguments to the name formatting codes and + * the metadata itself are passed as arguments following the comment string. + * The data must be a pointer for any of the elements stored in data.void. + * The argument list must be interpreted appropriately by the va_list + * operators in the function specified size and type. + * + * @return psMetadataItem* : Pointer metadata item. + */ +#ifdef DOXYGEN +psMetadataItem* psMetadataItemAlloc( + const char *name, ///< Name of metadata item. + psDataType type, ///< Type of metadata item. + const char *comment, ///< Comment for metadata item. + ... ///< Arguments for name formatting and metadata item data. +); +#else // ifdef DOXYGEN +psMetadataItem* p_psMetadataItemAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *name, ///< Name of metadata item. + psDataType type, ///< Type of metadata item. + const char *comment, ///< Comment for metadata item. + ... ///< Arguments for name formatting and metadata item data. +); +#define psMetadataItemAlloc(name, type, ...) \ + p_psMetadataItemAlloc(__FILE__, __LINE__, __func__, name, type, __VA_ARGS__) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr datatype. + * + * @return bool: True if the pointer matches a psMetadataItem structure, false otherwise. + */ +bool psMemCheckMetadataItem( + psPtr ptr ///< the pointer whose type to check +); + +// XXX Although all of the psMetadataItemAlloc[type] prototypes are allocators, +// I've decided not to modify them all to pass in file, lineno, func. +// Hopefully these prototypes will become macros or generated by macros some day +// so this can be done automatically. -JH + +/** Create a metadata item with specified string data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocStr( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + const char* value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psF32 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocF32( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psF32 value ///< the value of the metadata item. +); + +/** Create a metadata item with specified psF64 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocF64( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psF64 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psS8 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocS8( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psS8 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psS16 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocS16( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psS16 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psS32 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocS32( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psS32 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psS64 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocS64( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psS64 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psU8 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocU8( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psU8 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psU16 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocU16( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psU16 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psU32 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocU32( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psU32 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psU64 data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocU64( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + psU64 value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified bool data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocBool( + const char* name, ///< Name of metadata item. + const char* comment, ///< Comment for metadata item. + bool value ///< the value of the metadata item. +); + + +/** Create a metadata item with specified psPtr data. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataItemAllocPtr( + const char* name, ///< Name of metadata item. + psDataType type, ///< Data type of metadata item. + const char* comment, ///< Comment for metadata item. + psPtr value ///< the value of the metadata item. +); + + +/** Create a metadata item with va_list. + * + * Returns a fill psMetadataItem ready for insertion into the psMetadata + * struct. The name argument specifies the name to use for this item, and + * may include sprintf formatting codes. The format entry specifies both + * the metadata type and optional flags and is created by bit-wise or of the + * appropriate type and flag. The comment argument is a fixed string used to + * comment the metadata item. The arguments to the name formatting codes and + * the metadata itself are passed as arguments following the comment string. + * The data must be a pointer for any of the elements stored in data.void. + * The argument list must be interpreted appropriately by the va_list + * operators in the function specified size and type. + * + * @return psMetadataItem* : Pointer metadata item. + */ +#ifndef SWIG +#ifdef DOXYGEN +psMetadataItem* psMetadataItemAllocV( + const char *name, ///< Name of metadata item. + psDataType type, ///< Type of metadata item. + const char *comment, ///< Comment for metadata item. + va_list list ///< Arguments for name formatting and metadata item data. +); +#else // ifdef DOXYGEN +psMetadataItem* p_psMetadataItemAllocV( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const char *name, ///< Name of metadata item. + psDataType type, ///< Type of metadata item. + const char *comment, ///< Comment for metadata item. + va_list list ///< Arguments for name formatting and metadata item data. +); +#define psMetadataItemAllocV(name, type, comment, list) \ + p_psMetadataItemAllocV(__FILE__, __LINE__, __func__, name, type,comment, list) +#endif // ifdef DOXYGEN +#endif // #ifndef SWIG + + +/** Create a metadata collection. + * + * Returns an empty metadata container with fully allocated internal metadata + * containers. + * + * @return psMetadata* : Pointer metadata. + */ +#ifdef DOXYGEN +psMetadata* psMetadataAlloc(void); +#else // ifdef DOXYGEN +psMetadata* p_psMetadataAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func ///< Function name of caller +); +#define psMetadataAlloc() \ + p_psMetadataAlloc(__FILE__, __LINE__, __func__) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psMetadata structure, false otherwise. + */ +bool psMemCheckMetadata( + psPtr ptr ///< the pointer whose type to check +); + + +/** Creates a new copy of a psMetadataItem. + * + * @return psMetadataItem*: the copy of the psMetadataItem + */ +#ifdef DOXYGEN +psMetadataItem *psMetadataItemCopy( + const psMetadataItem *in ///< metadata item to be copied +); +#else // ifdef DOXYGEN +psMetadataItem *p_psMetadataItemCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const psMetadataItem *in ///< metadata item to be copied +); +#define psMetadataItemCopy(in) \ + p_psMetadataItemCopy(__FILE__, __LINE__, __func__, in) +#endif // ifdef DOXYGEN + + +/** Create a copy of an existing psMetadata collection. + * + * Creates a new copy of all the psMetadataItems in the psMetadata collection, + * in, and returns them in out, or creates a new container if out is NULL. If + * an error occurs, NULL is returned but out may still have been updated if it + * is non-NULL. + * + * @return psMetadata*: the copy of the psMetadata container. + */ +#ifdef DOXYGEN +psMetadata *psMetadataCopy( + psMetadata *out, ///< output Metadata container for copying. + const psMetadata *in ///< Metadata collection to be copied. +); +#else // ifdef DOXYGEN +psMetadata *p_psMetadataCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psMetadata *out, ///< output Metadata container for copying. + const psMetadata *in ///< Metadata collection to be copied. +); +#define psMetadataCopy(out, in) \ + p_psMetadataCopy(__FILE__, __LINE__, __func__, out, in) +#endif // ifdef DOXYGEN + + +/** Supplements a metadata with an item from another metadata. + * + * Supplements the output metadata with the metadata item of the specified name from the input metadata. If + * out is NULL, a new container is created. + * + * @return bool: True if successful, otherwise false. + */ +bool psMetadataItemSupplement( + psMetadata *out, ///< output Metadata container for copying. + const psMetadata *in, ///< Metadata collection from which to copy. + const char *key ///< key to identify the metadata item for copying. +); + + +/** Add existing metadata item to metadata collection. + * + * Add a metadata item that has already been created to the metadata + * collection. + * + * @return bool: True for success, false for failure. + */ +bool psMetadataAddItem( + psMetadata* md, ///< Metadata collection to insert metadata item. + const psMetadataItem* item, ///< Metadata item to be added. + int location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + psS32 flags ///< Options flag mask, see psMetadataFlags enum +); + + +/** Create and add a metadata item to metadata collection. + * + * Creates a new metadata item add to the metadata collection. + * + * @return bool: True for success, false for failure. + */ +bool psMetadataAdd( + psMetadata* md, ///< Metadata collection to insert metadata item. + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char *name, ///< Name of metadata item. + int format, ///< psDataType of metadata item & options (psMetadataFlags) + const char *comment, ///< Comment for metadata item. + ... ///< Arguments for name formatting and metadata item data. +); + + +/** Create and add a metadata item to metadata collection. + * + * Creates a new metadata item add to the metadata collection. + * + * @return bool: True for success, false for failure. + */ +#ifndef SWIG +bool psMetadataAddV( + psMetadata* md, ///< Metadata collection to insert metadata item. + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char *name, ///< Name of metadata item. + int format, ///< psDataType of metadata item & options (psMetadataFlags) + const char *comment, ///< Comment for metadata item. + va_list list ///< Arguments for name formatting and metadata item data. +); +#endif // #ifndef SWIG + + +/** Add a bool value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddBool( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + bool value ///< Value for metadata item data +); + + +/** Add a psS8 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddS8( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psS8 value ///< Value for metadata item data +); + + +/** Add a psS16 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddS16( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psS16 value ///< Value for metadata item data +); + + +/** Add a psS32 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddS32( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psS32 value ///< Value for metadata item data +); + + +/** Add a psS64 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddS64( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psS64 value ///< Value for metadata item data +); + + +/** Add a psU8 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddU8( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psU8 value ///< Value for metadata item data +); + + +/** Add a psU16 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddU16( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psU16 value ///< Value for metadata item data +); + + +/** Add a psU32 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddU32( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psU32 value ///< Value for metadata item data +); + + +/** Add a psU64 value to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddU64( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psU64 value ///< Value for metadata item data +); + + +/** Add a psF32 value to metadata collection. + * + * @return bool: True for success, False for failure. +*/ +bool psMetadataAddF32( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psF32 value ///< Value for metadata item data +); + + +/** Add a psF64 value to metadata collection. + * + * @return bool: True for success, False for failure. +*/ +bool psMetadataAddF64( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psF64 value ///< Value for metadata item data +); + + +/** Add a psList to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddList( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psList* value ///< psList for metadata item data +); + + +/** Add a string to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddStr( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + const char* value ///< String for metadata item data +); + + +/** Add a vector to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddVector( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psVector* value ///< Vector for metadata item data +); + + +/** Add a array to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddArray( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psArray* value ///< Vector for metadata item data +); + + +/** Add an Image to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddImage( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psImage* value ///< Image for metadata item data +); + + +/** Add a Time to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddTime( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psTime* value ///< Time for metadata item data +); + + +/** Add a Hash to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddHash( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psHash* value ///< Hash for metadata item data +); + + +/** Add a LookupTable to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddLookupTable( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psLookupTable* value ///< LookupTable for metadata item data +); + + +/** Add an Unknown (psPtr) to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddUnknown( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psPtr value ///< Unknown for metadata item data +); + + +/** Add a psPtr to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddPtr( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + psDataType type, ///< psDataType for metadata item + const char* comment, ///< Comment for metadata item + psPtr value ///< Unknown for metadata item data +); + + +/** Add Metadata to metadata collection. + * + * @return bool: True for success, False for failure. + */ +bool psMetadataAddMetadata( + psMetadata* md, ///< Metadata collection to insert metadata item + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* name, ///< Name of metadata item + int format, ///< psMetadataFlag options/flags + const char* comment, ///< Comment for metadata item + psMetadata* value ///< Metadata for metadata item data +); + + +/** Removes an item from metadata by key name. + * + * @return bool: True for success, false for failure. + */ +bool psMetadataRemoveKey( + psMetadata *md, ///< Metadata collection to remove metadata item. + const char *key ///< Name of metadata key. +); + + +/** Removes an item from metadata by index number. + * + * @return bool: True for success, false for failure. + */ +bool psMetadataRemoveIndex( + psMetadata *md, ///< Metadata collection to remove metadata item. + long location ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL +); + + +/** Find an item in the metadata collection based on key name. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the first item is returned. If the item is not found, null is + * returned. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataLookup( + const psMetadata * md, ///< Metadata collection to lookup metadata item. + const char * key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its double precision value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psF64 : Value of metadata item. + */ +psF64 psMetadataLookupF64( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its single precision value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psF32 : Value of metadata item. + */ +psF32 psMetadataLookupF32( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psS8 : Value of metadata item. + */ +psS8 psMetadataLookupS8( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psS16 : Value of metadata item. + */ +psS16 psMetadataLookupS16( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psS32 : Value of metadata item. + */ +psS32 psMetadataLookupS32( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psS64 : Value of metadata item. + */ +psS64 psMetadataLookupS64( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psU8 : Value of metadata item. + */ +psU8 psMetadataLookupU8( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psU16 : Value of metadata item. + */ +psU16 psMetadataLookupU16( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psU32 : Value of metadata item. + */ +psU32 psMetadataLookupU32( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psU64 : Value of metadata item. + */ +psU64 psMetadataLookupU64( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its boolean value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return bool : Value of metadata item. + */ +bool psMetadataLookupBool( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its integer value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return void* : Value of metadata item. + */ +psPtr psMetadataLookupPtr( + bool *status, ///< Status of lookup. + const psMetadata* md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on list index. + * + * Items may be found in the metadata by their entry position in the list + * container. + * + * @return psMetadataItem* : Pointer metadata item. + */ +psMetadataItem* psMetadataGet( + const psMetadata* md, ///< Metadata collection to retrieve metadata item. + int location ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL +); + + +/** Creates a psMetadataIterator to iterate over the specified psMetadata. + * + * Supports the subsetting of the metadata via keyword using regular + * expression. If no regular expression is specified, iteration + * over the entire psMetadata is performed. + * + * @return psMetadataIterator* a new psMetadataIterator, of NULL if error occurred + */ +#ifdef DOXYGEN +psMetadataIterator* psMetadataIteratorAlloc( + const psMetadata* md, ///< the psMetadata to iterate with + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* regex + ///< A regular expression for subsetting the psMetadata. If NULL, no + ///< subsetting is performed. +); +#else // ifdef DOXYGEN +psMetadataIterator* p_psMetadataIteratorAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + const psMetadata* md, ///< the psMetadata to iterate with + long location, ///< Index number, PS_LIST_HEAD, or PS_LIST_TAIL + const char* regex + ///< A regular expression for subsetting the psMetadata. If NULL, no + ///< subsetting is performed. +); +#define psMetadataIteratorAlloc(md, location, regex) \ + p_psMetadataIteratorAlloc(__FILE__, __LINE__, __func__, md, location, regex) +#endif // ifdef DOXYGEN + + +/** Set the iterator of the psMetadat to a given position. If location is + * invalid the iterator position is not changed. + * + * @return bool TRUE if iterator successfully set, otherwise FALSE. +*/ +bool psMetadataIteratorSet( + psMetadataIterator* iterator, ///< psMetadata iterator + long location ///< index number, PS_LIST_HEAD, or PS_LIST_TAIL +); + + +/** Position the specified iterator to the next matching item in psMetadata, + * given the regular expression of the iterator + * + * @return psPtr the psMetadataItem at the original iterator position + * or NULL if the iterator went past the end of the list. + */ +psMetadataItem* psMetadataGetAndIncrement( + psMetadataIterator* iterator ///< iterator to move +); + + +/** Position the specified iterator to the previous matching item in psMetadata, + * given the regular expression of the iterator + * + * @return psPtr the psMetadataItem at the original iterator position + * or NULL if the iterator went past the beginning of the + * list. + */ +psMetadataItem* psMetadataGetAndDecrement( + psMetadataIterator* iterator ///< iterator to move +); + + +/** Find an item in the metadata collection based on key name and return its metadata value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psMetadata*: Value of metadata item. + */ +psMetadata *psMetadataLookupMetadata( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return its string value. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psString: Value of metadata item. + */ +psString psMetadataLookupStr( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Find an item in the metadata collection based on key name and return it as a psTime pointer. + * + * Items may be found in the metadata by providing a key. If the key is + * non-unique, the value of the first item is returned. If the item is not + * found, zero is returned. + * + * @return psTime: Value of metadata item. + */ + +psTime *psMetadataLookupTime( + bool *status, ///< Status of lookup. + const psMetadata *md, ///< Metadata collection to lookup metadata item. + const char *key ///< Name of metadata key. +); + + +/** Prints metadata collection. + * + * Metadata contents are printed to a valid file descriptor if one exists. Otherwise, + * fd should be NULL and the contents are printed to the screen (stdout). + * + * @return bool: True if successful, otherwise false. +*/ +bool psMetadataPrint( + FILE *fd, ///< File Descriptor or NULL + const psMetadata *md, ///< Metadata collection to print. + int level ///< the level of metadata items. +); + + + +/// Assert on metadata with extant hash and list components +#define PS_ASSERT_METADATA_NON_NULL(NAME, RVAL) \ +if (!(NAME) || !(NAME)->hash || !(NAME)->list) { \ + psError(PS_ERR_BAD_PARAMETER_VALUE, true, \ + "Error: Metadata %s or one of its components is NULL.", \ + #NAME); \ + return RVAL; \ +} + +/// @} +#endif // #ifndef PS_METADATA_H Index: /branches/rel-1-1/psLib/src/types/psMetadataConfig.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataConfig.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataConfig.c (revision 12167) @@ -0,0 +1,1781 @@ +/** @file psMetadataConfig.c +* +* @brief Contains metadata input/output functions. +* +* This file defines functions to read and write metadata to/from an external file. +* +* @ingroup Metadata +* +* @author Ross Harman, MHPCC +* @author Eric Van Alst, MHPCC +* +* @version $Revision: 1.128 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 21:36:09 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "psMetadataConfig.h" +#include "psAssert.h" +#include "psTrace.h" + +/******************************************************************************/ +/* DEFINE STATEMENTS */ +/******************************************************************************/ + +/** Maximum size of a string */ +#define MAX_STRING_LENGTH 1024 +#define INITIAL_LENGTH 10 // Initial length for arrays + +/******************************************************************************/ +/* TYPE DEFINITIONS */ +/******************************************************************************/ + +// None + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +// None + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +static psMetadata* getMetadataType(char *linePtr); +static psMetadata* setMetadataItem(psMetadata* template, char* linePtr) +; +static bool parseLine(psArray* levelArray, char* linePtr, + psS32 lineCount, bool overwrite); +static bool parseMetadataItem(char* keyName, psArray* levelArray, + char* linePtr, psS32 lineCount, psMetadataFlags flags); +static psString formatMetadataItem(psMetadataItem *item); +static psArray *p_psMetadataKeyArray(psMetadata *md); +static bool parseGeneric(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags); +static bool parseType(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags); +static bool parseMetadataEnd(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags); + + +// A metadata data structure used in parsing arrays. +// Contains array information and the metadata storage location. +typedef struct +{ + psArray* nonUniqueKeyArray; ///< non-unique key names + psArray* typeArray; ///< array of user defined types + psArray* templateArray; ///< array of user type templates + psMetadata* metadata; ///< metadata container +} +p_psParseLevelInfo; + +static void parseLevelInfoFree(p_psParseLevelInfo* info) +{ + psFree(info->nonUniqueKeyArray); + psFree(info->typeArray); + psFree(info->templateArray); + psFree(info->metadata); +} + +static p_psParseLevelInfo* p_psParseLevelInfoAlloc(void) +{ + // Allocate memory for parse level info + p_psParseLevelInfo *info = (p_psParseLevelInfo*)psAlloc(sizeof(p_psParseLevelInfo)); + psMemSetDeallocator(info,(psFreeFunc)parseLevelInfoFree); + + info->nonUniqueKeyArray = psArrayAllocEmpty(INITIAL_LENGTH); + info->typeArray = psArrayAllocEmpty(INITIAL_LENGTH); + info->templateArray = psArrayAllocEmpty(INITIAL_LENGTH); + info->metadata = NULL; + + return info; +} + +// Determines if a line is blank (whitespace only) or a commentline. It returns true if so. The input string +// must be null terminated. +static bool ignoreLine(char *inString) +{ + while(*inString!='\0' && *inString!='#') { + if(!isspace(*inString)) { + return false; + } + inString++; + } + + return true; +} + + +// Removes leading and trailing whitespace and # characters from a string. The cleaned string is a new null +// terminated copy of the original input string. +static char *cleanString(char *inString, + psS32 sLen, + bool ignoreComment) +{ + char *ptrB = NULL; + char *ptrE = NULL; + char *cleaned = NULL; + + // Initialize begining of string pointer + ptrB = inString; + + // Skip over leading # or whitespace + if(ignoreComment) { + while (isspace(*ptrB) || *ptrB=='#') { + ptrB++; + } + } else { + while (isspace(*ptrB)) { + ptrB++; + } + } + + // Skip over trailing whitespace, null terminators, and # characters + ptrE = inString + sLen; + if(ignoreComment) { + while(isspace(*ptrE) || *ptrE=='\0' || *ptrE=='#') { + ptrE--; + } + } else { + while(isspace(*ptrE) || *ptrE=='\0') { + ptrE--; + } + } + + // Length, sLen, does not include '\0' + sLen = ptrE - ptrB + 1; + + // Adds '\0' to end of string and +1 to sLen + if(sLen < 0 ) { + cleaned = NULL; + } else { + cleaned = psStringNCopy(ptrB, sLen); + } + + return cleaned; +} + +// Count repeat occurances of a single character within a line. The input string must be null terminated. +static psS32 repeatedChars(char *inString, + char ch) +{ + psS32 count = 0; + + while(*inString!='\0') { + if(*inString == ch) { + count++; + } + inString++; + } + + return count; +} + +// Returns cleaned token based on delimiter, but not including delimiter. Also changes the pointer location +// the beginning of the string. Tokens are newly allocated null terminated strings. +static char* getToken(char **inString, + char *delimiter, + psS32 *status, + bool ignoreComment) +{ + char *cleanToken = NULL; + char *convertChar = NULL; + psS32 sLen = 0; + + // Convert tab characters to white space + while((convertChar=strchr(*inString,'\t')) != NULL ) { + *convertChar = ' '; + } + + // Skip over leading whitespace + while(isspace(**inString)) { + (*inString)++; + } + + // Length of token, not including delimiter + sLen = strcspn(*inString, delimiter); + if(sLen) { + + // Create new, cleaned, and null terminated token + cleanToken = cleanString(*inString, sLen,ignoreComment); + + // Move to end of token + (*inString) += sLen; + } else if(**inString!='\0' && sLen==0) { + *status = 1; + } + + return cleanToken; +} + +// Returns single parsed value as a double precision number. The input string must be cleaned and null +// terminated. +static double parseDouble(char *inString, + psS32 *status) +{ + char *end = NULL; + double value = 0.0; + + value = strtod(inString, &end); + if(*end != '\0') { + *status = 1; + } else if(inString==end) { + *status = 1; + } + + return value; +} + +// Returns single parsed value as a long signed int. The input string must be cleaned and null +// terminated. +static psS64 parseSignedInt(char *inString, + psS32 *status) +{ + char *end = NULL; + psS64 value = 0; + + value = strtol(inString, &end, 0); + if(*end != '\0') { + *status = 1; + } else if(inString==end) { + *status = 1; + } + + return value; +} + +// Returns single parsed value as a double precision number. The input string must be cleaned and null +// terminated. +static psU64 parseUnsignedInt(char *inString, + psS32 *status) +{ + char *end = NULL; + psU64 value = 0; + + value = strtoul(inString, &end, 0); + if(*end != '\0') { + *status = 1; + } else if(inString==end) { + *status = 1; + } + + return value; +} + +/** Returns true or false. 'T', 't', '1', 'F', 'f', and '0' are acceptable, parsable variations. */ +static bool parseBool(char *inString, + psS32 *status) +{ + // if inString is NULL return flalse, status = 0 + if (!inString) { + if (status) { + *status = 0; + } + return false; + } + + if (!strncasecmp(inString, "T", 2) || + !strncmp(inString, "1", 2) || + !strncasecmp(inString, "true", 5)) { + if (status != NULL) { + *status = 0; + } + return true; + } + if ( !strncasecmp(inString, "F", 2) || + !strncmp(inString, "0", 2) || + !strncasecmp(inString, "false", 6)) { + if (status != NULL) { + *status = 0; + } + return false; + } + + if (status != NULL) { + *status = 1; + } + return false; +} + +/** Returns a psTime structure */ +static psTime *parseTime(char *inString, + psTimeType tt, + psS32 *status) +{ + PS_ASSERT_PTR_NON_NULL(status, NULL); + if (!inString) { + *status = 0; + return NULL; + } + + // handle "NULL" as the time value + if (strncmp(inString, "NULL", 5) == 0) { + *status = 0; + return NULL; + } + + psTime *out = psTimeFromISO(inString, tt); + if (!out) { + *status = 1; + return NULL; + } + + *status = 0; + + return out; +} + +/** Returns parsed vector filled with with data. The input string must be null terminated. */ +static psVector* parseVector(char *inString, + psElemType elemType, + psS32 *status) +{ + PS_ASSERT_PTR_NON_NULL(inString, NULL); + + // split string into multiple values on " " and "," + psList *tokens = psStringSplit(inString, ", ", false); + + // allocate a large enough vector to hold all of the tokens + psVector *vec = psVectorAlloc(psListLength(tokens), elemType); + + // iterate through the list of tokens and concert them to numeric values + // one by one + for (long i = 0; i < psListLength(tokens); i ++) { + psString tok = psListGet(tokens, i); + char *ptr = NULL; + double value = strtod(tok, &ptr); + + // ptr will be set to tok if the parse failed + if (tok == ptr) { + *status = 1; + psError(PS_ERR_IO, true, + _("failed to parse %s as a vector element."), tok); + psFree(vec); + psFree(tokens); + return NULL; + } + + // XXX this switch statement and cases should be turned inside out but + // this optimization isn't a priority + switch(elemType) { + case PS_TYPE_U8: + vec->data.U8[i] = (psU8)value; + break; + case PS_TYPE_U16: + vec->data.U16[i] = (psU16)value; + break; + case PS_TYPE_U32: + vec->data.U32[i] = (psU32)value; + break; + case PS_TYPE_U64: + vec->data.U64[i] = (psU64)value; + break; + case PS_TYPE_S8: + vec->data.S8[i] = (psS8)value; + break; + case PS_TYPE_S16: + vec->data.S16[i] = (psS16)value; + break; + case PS_TYPE_S32: + vec->data.S32[i] = (psS32)value; + break; + case PS_TYPE_S64: + vec->data.S64[i] = (psS64)value; + break; + case PS_TYPE_F32: + vec->data.F32[i] = (psF32)value; + break; + case PS_TYPE_F64: + vec->data.F64[i] = (psF64)value; + break; + default: + *status = 1; + psError(PS_ERR_BAD_PARAMETER_VALUE,true, + _("Specified type, %d, is not supported."), elemType); + psFree(vec); + psFree(tokens); + return NULL; + break; // unreachable + } + } + + psFree(tokens); + + return vec; +} + + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +bool psMetadataItemPrint(FILE * fd, + const char *format, + const psMetadataItem* item) +{ + psDataType type; + bool success = true; + + PS_ASSERT_PTR_NON_NULL(fd, false); + PS_ASSERT_PTR_NON_NULL(format, false); + PS_ASSERT_PTR_NON_NULL(item, false); + + type = item->type; + + // determining the format type + char* fType = strchr(format,'%'); + if (fType == NULL) { + // well, the format contains no reference to the metadataItem's data: + // that is truly trival to do! + // fprintf(fd,format); + return false; + } + + // skip over any format modifiers + const char* formatEnd = format+strlen(format); + while ( (fType < formatEnd) && + (strchr(" +-01234567890.$#, hlL",*(++fType)) != NULL) ) {} + + #define METADATAITEM_NUMERIC_CAST(FORMAT_TYPE) { \ + switch(type) { \ + case PS_DATA_BOOL: \ + fprintf(fd, format, (FORMAT_TYPE) item->data.B); \ + break; \ + case PS_DATA_S8: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.S8); \ + break; \ + case PS_DATA_S16: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.S16); \ + break; \ + case PS_DATA_S32: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.S32); \ + break; \ + case PS_DATA_S64: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.S64); \ + break; \ + case PS_DATA_U8: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.U8); \ + break; \ + case PS_DATA_U16: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.U16); \ + break; \ + case PS_DATA_U32: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.U32); \ + break; \ + case PS_DATA_U64: \ + fprintf(fd,format,(FORMAT_TYPE) item->data.U64); \ + break; \ + case PS_DATA_F32: \ + fprintf(fd, format,(FORMAT_TYPE) item->data.F32); \ + break; \ + case PS_DATA_F64: \ + fprintf(fd, format,(FORMAT_TYPE) item->data.F64); \ + break; \ + default: \ + psError(PS_ERR_BAD_PARAMETER_TYPE,true, \ + _("Specified psDataType, %d, is not supported."), (int)type); \ + success = false; \ + } \ + } + + switch(*fType) { + case 'd': + case 'i': + case 'c': + METADATAITEM_NUMERIC_CAST(int) + break; + case 'o': + case 'u': + case 'x': + case 'X': + METADATAITEM_NUMERIC_CAST(unsigned int) + break; + case 'e': + case 'E': + case 'f': + case 'F': + case 'g': + case 'G': + case 'a': + case 'A': + METADATAITEM_NUMERIC_CAST(double) + break; + case 's': + if (type == PS_DATA_STRING) { + fprintf(fd,format, item->data.str); + } else { + psError(PS_ERR_BAD_PARAMETER_TYPE,true, + _("Specified psDataType, %d, is not supported."), (int)type); + success = false; + } + break; + case 'p': + fprintf(fd,format,item->data.V); + break; + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified print format, %%%c, is not supported."), *fType); + success = false; + break; + } + + return success; +} + +static psMetadata* getMetadataType(char* linePtr) +{ + psMetadata* metadataTemplate = NULL; + psS32 status = 0; + char* token = NULL; + psMetadataItem* tempItem = NULL; + + // Loop through line and generate metadata items for each token found + while((token = getToken(&linePtr, " ", &status, false)) != NULL) { + + // If not allocated then allocate new metadata + if (metadataTemplate == NULL) { + metadataTemplate = psMetadataAlloc(); + } + + // Look for comment indicator # + if (strstr(token, "#") != 0) { + psFree(token); + return NULL; + } + + // Create metadata item to represent token read + tempItem = psMetadataItemAllocStr(token, "", ""); + if (tempItem == NULL) { + psFree(metadataTemplate); + psFree(token); + return NULL; + } + + // Add item to template + if (!psMetadataAddItem(metadataTemplate, tempItem, PS_LIST_TAIL, PS_META_DEFAULT)) { + psFree(metadataTemplate); + psFree(tempItem); + psFree(token); + return NULL; + } + + psFree(tempItem); + psFree(token); + } + + return metadataTemplate; +} + +static psMetadata* setMetadataItem(psMetadata* template, + char* linePtr) +{ + psMetadata* md = NULL; + psS32 items = 0; + char* token = NULL; + psS32 status = 0; + psMetadataItem* mdItem = NULL; + psMetadataItem* templateItem = NULL; + psListIterator* iter = NULL; + + // Determine the number of items in template + items = template->list->n; + if(items > 0 ) { + // Allocate metadata + md = psMetadataAlloc() + ; + // Point to first item in template + iter = psListIteratorAlloc(template-> + list, PS_LIST_HEAD, true); + // For each item in template parse line string for values + for(psS32 i = 0; + i < items; + i++) { + // Get template item + templateItem = psListGetAndIncrement(iter) + ; + if(templateItem == NULL) { + psFree(md); + psFree(iter); + md = NULL; + break; + } + // Get the next token on the line + token = getToken(&linePtr, " ", &status, false); + if(token != NULL) { + // Allocate metadata item + mdItem = psMetadataItemAllocStr(templateItem->name, + templateItem->comment, token); + if(mdItem == NULL) { + psFree(md); + md = NULL; + psFree(token); + psFree(iter); + break; + } + + // Add item to metadata + if(!psMetadataAddItem(md, mdItem, PS_LIST_TAIL, PS_META_DEFAULT)) { + psFree(md); + md = NULL; + psFree(mdItem); + psFree(token); + psFree(iter); + break; + } + psFree(mdItem); + } else { + // Missing items + psFree(md); + psFree(iter); + md = NULL; + break; + } + + psFree(token); + } + } + return md; +} + +bool parseMetadataItem(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags) +{ + bool returnValue = true; + bool addStatus = false; + psDataType mdType = PS_DATA_UNKNOWN; + psElemType vectorType = PS_TYPE_S8; + char* strType = NULL; + char* strValue = NULL; + char* strComment = NULL; + psS32 status = 0; + psMetadata* md = NULL; + psF64 tempDbl = 0.0; + bool tempBool = false; + psS64 tempInt = 0; + psU64 tempUint = 0; + psVector* tempVec = NULL; + char* tempStr = NULL; + psArray* nonUniqueKeys = NULL; + bool typeFound = false; + psArray* typeArray = NULL; + psArray* templateArray = NULL; + psMetadata* tempMeta = NULL; + p_psParseLevelInfo* nextLevelInfo = NULL; + psTime *mTime; + psTimeType timeType = PS_TIME_TAI; + + // Get the metadata item type + strType = getToken(&linePtr, " ", &status,true); + + long level = psArrayLength(levelArray) - 1; + + // Check for no type + if(strType==NULL) { + psError(PS_ERR_IO, true, + _("Failed to read a metadata %s on line %u."), "type",lineCount); + returnValue = false; + } else { + + // Set metadata type based on type token + + // Check if the keyName specifies a vector and if so use strType token to find vector type + if(*keyName == '@') { + mdType = PS_DATA_VECTOR; + // Get the type of vector + if(!strncmp(strType, "U8", 2)) { + vectorType = PS_TYPE_U8; + } else if (!strncmp(strType,"U16",3)) { + vectorType = PS_TYPE_U16; + } else if (!strncmp(strType,"U32",3)) { + vectorType = PS_TYPE_U32; + } else if (!strncmp(strType,"U64",3)) { + vectorType = PS_TYPE_U64; + } else if (!strncmp(strType,"S8",2)) { + vectorType = PS_TYPE_S8; + } else if (!strncmp(strType,"S16",3)) { + vectorType = PS_TYPE_S16; + } else if (!strncmp(strType,"S32",3)) { + vectorType = PS_TYPE_S32; + } else if (!strncmp(strType,"S64",3)) { + vectorType = PS_TYPE_S64; + } else if (!strncmp(strType,"F32",3)) { + vectorType = PS_TYPE_F32; + } else if (!strncmp(strType,"F64",3)) { + vectorType = PS_TYPE_F64; + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, " + "on line %u."), "", keyName, strType, lineCount); + psFree(strType); + return false; + } + } else if(!strncmp(strType, "STR", 3)) { + mdType = PS_DATA_STRING; + } else if(!strncmp(strType, "BOOL", 4)) { + mdType = PS_DATA_BOOL; + } else if(!strncmp(strType, "S8", 2)) { + mdType = PS_DATA_S8; + } else if(!strncmp(strType, "S16", 3)) { + mdType = PS_DATA_S16; + } else if(!strncmp(strType, "S32", 3)) { + mdType = PS_DATA_S32; + } else if(!strncmp(strType, "S64", 3)) { + mdType = PS_DATA_S64; + } else if(!strncmp(strType, "U8", 2)) { + mdType = PS_DATA_U8; + } else if(!strncmp(strType, "U16", 3)) { + mdType = PS_DATA_U16; + } else if(!strncmp(strType, "U32", 3)) { + mdType = PS_DATA_U32; + } else if(!strncmp(strType, "U64", 3)) { + mdType = PS_DATA_U64; + } else if(!strncmp(strType, "F32", 3)) { + mdType = PS_DATA_F32; + } else if(!strncmp(strType, "F64", 3)) { + mdType = PS_DATA_F64; + } else if(!strncmp(strType, "MULTI", 5)) { + mdType = PS_DATA_METADATA_MULTI; + } else if(!strncmp(strType, "METADATA", 8)) { + mdType = PS_DATA_METADATA; + } else if( !strncmp(strType, "UTC", 3) || !strncmp(strType, "TAI", 3) + || !strncmp(strType, "UT1", 3) || !strncmp(strType, "TT", 3)) { + mdType = PS_DATA_TIME; + } else { + // Search through user types + typeArray = ((p_psParseLevelInfo*)(levelArray->data[level]))->typeArray; + templateArray = ((p_psParseLevelInfo*)(levelArray->data[level]))->templateArray; + for(psS32 k = 0; k < typeArray->n; k++) { + if(strcmp(strType,(char*)typeArray->data[k]) == 0) { + tempMeta = setMetadataItem((psMetadata*)templateArray->data[k],linePtr); + if(tempMeta != NULL) { + // Add metadata item + md = ((p_psParseLevelInfo*)(levelArray->data[level]))->metadata; + addStatus = psMetadataAdd(md,PS_LIST_TAIL,keyName, + PS_DATA_METADATA | flags,"",tempMeta); + // Check for add failure + if (! addStatus) { + psError(PS_ERR_IO, true, + _("Duplicate Metadata item, %s, found on line %u. " + "Overwrite not allowed."), + keyName, lineCount); + psFree(strType); + psFree(tempMeta); + return false; + } + psFree(tempMeta); + } else { + // Metadata type read error + psError(PS_ERR_IO,true, + _("Failed to read a metadata %s on line %u."), + keyName, lineCount); + psFree(strType); + return false; + } + typeFound = true; + break; + } + } + if(!typeFound) { + psError(PS_ERR_IO, true, + _("Metadata type '%s', found on line %u, is invalid."), + strType, lineCount); + psFree(strType); + return false; + } else { + psFree(strType); + return true; + } + } + } + + // If type is not MULTI or META then get the value and comment + if((mdType != PS_DATA_METADATA_MULTI) && (mdType != PS_DATA_METADATA)) { + // Get the metadata item value if there is one. + status = 0; + strValue = getToken(&linePtr, "#", &status,true); + + if(status) { + psError(PS_ERR_IO, true, + _("Failed to read a metadata %s on line %u."), "value", lineCount); + psFree(strType); + psFree(strValue); + return false; + } + + if(strValue==NULL) { + psError(PS_ERR_IO, true, + _("Failed to read a metadata %s on line %u."), "value", lineCount); + psFree(strType); + psFree(strValue); + return false; + } + // Not all lines will have comments, so NULL is ok. + status = 0; + // XXX this is a very ugly way of finding from the current position to + // the end of the line + strComment = getToken(&linePtr, "", &status, true); + if(status) { + psError(PS_ERR_IO, true, + _("Failed to read a metadata %s on line %u."), "comment", lineCount); + psFree(strType); + psFree(strValue); + psFree(strComment); + } + } + + // Need to add item to metadata so get pointer to metadata + status = 0; + md = ((p_psParseLevelInfo*)(levelArray->data[level]))->metadata; + nonUniqueKeys = ((p_psParseLevelInfo*)(levelArray->data[level]))->nonUniqueKeyArray; + switch(mdType) { + case PS_DATA_STRING: + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, + mdType | flags, + strComment, strValue); + break; + case PS_DATA_BOOL: + tempBool = parseBool(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, + mdType | flags, + strComment, tempBool); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, " + "on line %u."), strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_F32: + case PS_DATA_F64: + tempDbl = parseDouble(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, + mdType | flags, + strComment, tempDbl); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, " + "on line %u."), strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_S8: + tempInt = (psS8) parseSignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempInt); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_S16: + tempInt = (psS16) parseSignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempInt); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_S32: + tempInt = (psS32) parseSignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempInt); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_S64: + tempInt = (psS64) parseSignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempInt); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_U8: + tempUint = (psU8)parseUnsignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempUint); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_U16: + tempUint = (psU16)parseUnsignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempUint); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_U32: + tempUint = (psU32)parseUnsignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempUint); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_U64: + tempUint = (psU64)parseUnsignedInt(strValue, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, mdType | flags, + strComment, tempUint); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + break; + case PS_DATA_TIME: + if(!strncmp(strType, "UTC", 3)) { + timeType = PS_TIME_UTC; + } else if(!strncmp(strType, "TAI", 3)) { + timeType = PS_TIME_TAI; + } else if(!strncmp(strType, "UT1", 3)) { + timeType = PS_TIME_UT1; + } else if(!strncmp(strType, "TT", 3)) { + timeType = PS_TIME_TT; + } + + mTime = parseTime(strValue, timeType, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, + mdType | flags, + strComment, mTime); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + psFree(mTime); + break; + case PS_DATA_VECTOR: + tempVec = parseVector(strValue, vectorType, &status); + if(!status) { + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName+1, + mdType | flags, + strComment, tempVec); + } else { + psError(PS_ERR_IO, true, + _("Failed to parse the value '%s' of metadata item %s, type %s, on line %u."), + strValue, keyName, strType, lineCount); + returnValue = false; + } + psFree(tempVec); + break; + case PS_DATA_METADATA_MULTI: + // Add key to non-unique array of keys + // Check for duplicate MULTI lines + addStatus = true; + for(psS32 k=0; k < nonUniqueKeys->n; k++) { + if(strcmp(keyName,(char*)nonUniqueKeys->data[k]) == 0) { + psError(PS_ERR_IO,true,_("Duplicate MULTI specifier on line %u."), + lineCount); + psFree(strType); + return false; + } + } + tempStr = psStringCopy(keyName); + nonUniqueKeys = psArrayAdd(nonUniqueKeys,0,tempStr); + addStatus = true; + psFree(tempStr); + break; + case PS_DATA_METADATA: { + // create the nested metadata + psMetadata *newScope = psMetadataAlloc(); + + // Create next level info + nextLevelInfo = p_psParseLevelInfoAlloc(); + + // switch to the scope to the new metadata + nextLevelInfo->metadata = newScope; + + // Add next level to levelArray + levelArray = psArrayAdd(levelArray, 0, nextLevelInfo); + psFree(nextLevelInfo); + + addStatus = psMetadataAdd(md, PS_LIST_TAIL, keyName, + mdType | flags, + strComment, newScope); + break; + } + default: + psError(PS_ERR_IO, true, + _("Metadata of unknown type found on line %u."), lineCount); + break; + } + + // Check if the add status was successful + if (! addStatus) { + returnValue = false; + } + + psFree(strComment); + psFree(strValue); + psFree(strType); + + return returnValue; +} + +bool parseLine(psArray* levelArray, + char* linePtr, + psS32 lineCount, + bool overwrite) +{ + psMetadataFlags flags = PS_META_DEFAULT; + + // Set flags if overwrite specified + if (overwrite) { + flags = PS_META_REPLACE; + } + + // If line is a comment or blank, then extract data + if (ignoreLine(linePtr)) { + // do nothing and return + return true; + } + + // Check for more than one '@' in a line + // XXX this logic is wrong -- there's no reason a @ can't appear in a + // comment + if (repeatedChars(linePtr, '@') > 1) { + psError(PS_ERR_IO, true, + _("More than one '@' character not allowed. Found on line %u."), lineCount); + return false; + } + + // Get metadata item name + psS32 status = 0; + char *keyName = getToken(&linePtr, " ", &status, true); + if (status) { + psError(PS_ERR_IO, true, + _("Failed to read item key name on line %u."), lineCount); + psFree(keyName); + return false; + } + + // Check for special keyName values "TYPE", "END" + if (strcmp(keyName, "END") == 0) { + if (!parseMetadataEnd(keyName, levelArray, linePtr, lineCount, flags)) { + goto FAIL; + } + } else if (strcmp(keyName,"TYPE") == 0 ) { + if (!parseType(keyName, levelArray, linePtr, lineCount, flags)) { + goto FAIL; + } + } else { + if (!parseGeneric(keyName, levelArray, linePtr, lineCount, flags)) { + goto FAIL; + } + } + + psFree(keyName); + + return true; + +FAIL: + psError(PS_ERR_UNKNOWN, false, + _("Failed to parse line %u: %s."), lineCount, linePtr); + psFree(keyName); + return false; +} + +static bool parseGeneric(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags) +{ + PS_ASSERT_PTR_NON_NULL(keyName, false); + PS_ASSERT_PTR_NON_NULL(levelArray, false); + PS_ASSERT_PTR_NON_NULL(linePtr, false); + + long level = psArrayLength(levelArray) - 1; + + // Check if key name present in array of non-unique key names + psS32 limit = ((p_psParseLevelInfo*)(levelArray->data[level]))->nonUniqueKeyArray->n; + for (psS32 k = 0; k < limit; k++) { + char *name = (char*)((p_psParseLevelInfo*) + (levelArray->data[level]))->nonUniqueKeyArray->data[k]; + if (strcmp(name, keyName) == 0) { + flags = PS_META_DUPLICATE_OK; + } + } + + // Parse metadataItem + if (!parseMetadataItem(keyName, levelArray, linePtr, lineCount, flags)) { + return false; + } + + return true; +} + +static bool parseType(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags) +{ + PS_ASSERT_PTR_NON_NULL(keyName, false); + PS_ASSERT_PTR_NON_NULL(levelArray, false); + PS_ASSERT_PTR_NON_NULL(linePtr, false); + + long level = psArrayLength(levelArray) - 1; + + // Get the type name + psS32 status = 0; + char *strType = getToken(&linePtr, " ", &status, true); + if(!strType) { + psError(PS_ERR_IO,true, + _("Failed to read item type on line %u."), lineCount); + return false; + } + if (status) { + psError(PS_ERR_IO, true, + _("Failed to read item type on line %u."), lineCount); + psFree(strType); + return false; + } + + // attempt to parse the TYPE line into a template metadata + psMetadata *tempTemplate = getMetadataType(linePtr); + if (!tempTemplate) { + psError(PS_ERR_IO,true, + _("Metadata type '%s', found on line %u, is invalid."), + strType,lineCount); + psFree(strType); + return false; + } + + // Access type array + psArray *typeArray = ((p_psParseLevelInfo*)(levelArray->data[level]))->typeArray; + + // Check if type already exists in array + for (psS32 k = 0; k < psArrayLength(typeArray); k++) { + // Compare type name with the list of current types + if (strcmp(strType, (char*)typeArray->data[k]) == 0) { + psError(PS_ERR_IO,true, + _("Specified type, %s, on line %u is already defined."), + strType, lineCount); + psFree(tempTemplate); + psFree(strType); + return false; + } + } + + // Add key name to array of type + typeArray = psArrayAdd(typeArray, 0, strType); + psFree(strType); + + // Add template to array of templates + psArray *templateArray = ((p_psParseLevelInfo*)(levelArray->data[level]))->templateArray; + psArrayAdd(templateArray, 0, tempTemplate); + psFree(tempTemplate); + + return true; +} + +static bool parseMetadataEnd(char* keyName, + psArray* levelArray, + char* linePtr, + psS32 lineCount, + psMetadataFlags flags) +{ + PS_ASSERT_PTR_NON_NULL(keyName, false); + PS_ASSERT_PTR_NON_NULL(levelArray, false); + PS_ASSERT_PTR_NON_NULL(linePtr, false); + + long level = psArrayLength(levelArray) - 1; + + if ((level) < 1) { + psError(PS_ERR_UNKNOWN, false, "can not END the top level metadata"); + return false; + } + + // the END just moved us up one nesting level + // Remove lower info level + if(!psArrayRemoveIndex(levelArray, level)) { + psError(PS_ERR_UNKNOWN, false, "failed to remove array item"); + return false; + } + + return true; +} + +psMetadata* psMetadataConfigRead(psMetadata* md, + unsigned int *nFail, + const char *filename, + bool overwrite) +{ + // Check for NULL file name + PS_ASSERT_PTR_NON_NULL(filename, NULL); + + // Attempt to open specified file + int fd = 0; + fd = open(filename, O_RDONLY); + if (fd < 0) { + // XXX really should return strerror() here + psError(PS_ERR_IO, true, + _("Failed to open file '%s'. Check if it exists and it has the proper " + "permissions."), filename); + close(fd); + return NULL; + } + + // Results of stat() for file + struct stat buf; + if (fstat(fd, &buf) != 0) { + psError(PS_ERR_IO, true, _("Unable to stat file '%s'.\n"), filename); + close(fd); + return NULL; + } + // XXX EAM : for some reason, the mmap below results in a buffer which causes + // bus errors if the file is empty. This seems like a strange result... + if (buf.st_size == 0) { + psError(PS_ERR_IO, true, _("Empty file '%s'.\n"), filename); + close(fd); + return NULL; + } + + // determine the system page size + int pageSize = getpagesize(); + + // request one extra page. even if st_size is an exact multiple of pageSize, this + // will guarantee we get a block of 0-valued bytes at the end of the file data. + int nPages = buf.st_size / pageSize + 1; + + int nBytes = nPages * pageSize; + + // psMetadataConfigParse() is going to read the entire file into memory so + // we're trying to be nice by allowing the VM to flush the file out of + // memory if need be. + + void *file = mmap(0, nBytes, PROT_READ, MAP_PRIVATE, fd, 0); + if (file == MAP_FAILED) { + psError(PS_ERR_IO, true, _("failed to mmap() file %s"), filename); + if (close(fd) != 0) { + psError(PS_ERR_IO, true, _("Failed to close file '%s'."), filename); + } + return NULL; + } + + bool success = true; + + md = psMetadataConfigParse(md, nFail, (char *)file, overwrite); + if (!md) { + psError(PS_ERR_IO, true, _("failed to parse file '%s'"), filename); + success = false; + } + + if (munmap(file, nBytes) != 0) { + psError(PS_ERR_IO, true, _("failed to munmap file '%s'"), filename); + success = false; + } + + if (close(fd) != 0) { + psError(PS_ERR_IO, true, _("Failed to close file '%s'."), filename); + success = false; + } + + if (!success) { + psFree (md); + return NULL; + } + return md; +} + +psMetadata* psMetadataConfigParse(psMetadata* md, + unsigned int *nFail, + const char *str, + bool overwrite) +{ + bool allocedMD = false; + + PS_ASSERT_PTR_NON_NULL(str, NULL); + + // Initialise nFail, if provided + if (nFail) { + *nFail = 0; + } + + // Allocate metadata if necessary + if (md == NULL) { + allocedMD = true; + md = psMetadataAlloc(); + } + + // split the input string into an array of lines + psList *doc = psStringSplit(str, "\n", true); + if (!doc) { + psError(PS_ERR_UNKNOWN, false, "failed to split string: %s", str); + if (allocedMD) { + psFree(md); + } + return NULL; + } + if (psListLength(doc) == 0) { + psError(PS_ERR_UNKNOWN, false, "string contained no lines"); + psFree(doc); + if (allocedMD) { + psFree(md); + } + return NULL; + } + + // Allocate array to store parse level information + psArray *parseLevelInfoArray = psArrayAllocEmpty(INITIAL_LENGTH); + + // Set parse level info for the top level + p_psParseLevelInfo *topLevelInfo = p_psParseLevelInfoAlloc(); + topLevelInfo->metadata = psMemIncrRefCounter(md); + psArrayAdd(parseLevelInfoArray, 0, topLevelInfo); + psFree(topLevelInfo); + + // clear the error stack so we can call psError(..., false, ...) and let + // errors from the parse loop accumulate + psErrorClear(); + + // While loop to parse the file + long lineCount = 0; + char *line = NULL; + psListIterator *iter = psListIteratorAlloc(doc, 0, false); + while ((line = psListGetAndIncrement(iter))) { + lineCount++; // indexed from 1 + + if (!parseLine(parseLevelInfoArray, line, lineCount, + overwrite)) { + if (nFail != NULL) { + (*nFail)++; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Error parsing line: %s", line); + } + psTrace("psLib.types", 4, "Error parsing line: %s", line); + } + } + + psFree(iter); + psFree(doc); + + // Free parse array and line buffer + psFree(parseLevelInfoArray); + + return md; +} + +psString psMetadataConfigFormat(psMetadata *md) +{ + PS_ASSERT_PTR_NON_NULL(md, NULL); + + psString format = NULL; + + psArray *keys = p_psMetadataKeyArray(md); + for (long i = 0; i < psArrayLength(keys); i++) { + psMetadataItem *item = psMetadataLookup(md, keys->data[i]); + if (!item) { + // XXX : this is probably not the right error value + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psDataType, %d, is not supported."), PS_DATA_UNKNOWN); + psFree(keys); + psFree(format); + return NULL; + } + psString str = formatMetadataItem(item); + if (!str) { + psError(PS_ERR_UNKNOWN, false, "failed to format psMetadataItem"); + psFree(keys); + psFree(format); + psFree(str); + return NULL; + } + psStringAppend(&format, "%s", str); + psFree(str); + } + + psFree(keys); + + return format; +} + + +static psString formatMetadataItem(psMetadataItem *item) +{ + PS_ASSERT_PTR_NON_NULL(item, NULL); + + psString content = NULL; + + #define FORMAT_PRIMITIVE_METADATAITEM(type, dataformat) \ + psStringAppend(&content, "%-15s %-8s %-15" dataformat, \ + item->name, #type, item->data.type); \ + if (item->comment && strncmp(item->comment, "", 2)) { \ + psStringAppend(&content, " # %s", item->comment); \ + } \ + psStringAppend(&content, "\n"); + + // In this block, the single item is used to build 'content' + switch (item->type) { + case PS_DATA_METADATA_MULTI: { + psStringAppend(&content, "%s MULTI\n", item->name); + + // a MULTI is a list of items so we need to recurse through the + // list + psListIterator *iter = psListIteratorAlloc(item->data.list, 0, false); + psMetadataItem *multiItem = NULL; + while ((multiItem = psListGetAndIncrement(iter))) { + psString str = formatMetadataItem(multiItem); + psStringAppend(&content, str); + psFree(str); + } + psFree(iter); + } + break; + case PS_DATA_BOOL: + psStringAppend (&content, "%-15s %-8s %-15s", + item->name, "BOOL", item->data.B ? "T" : "F"); + if (item->comment && strncmp(item->comment, "", 2)) { + psStringAppend(&content, " # %s", item->comment); + } + psStringAppend(&content, "\n"); + break; + case PS_DATA_S8: + FORMAT_PRIMITIVE_METADATAITEM(S8, "d"); + break; + case PS_DATA_S16: + FORMAT_PRIMITIVE_METADATAITEM(S16, "d"); + break; + case PS_DATA_S32: + FORMAT_PRIMITIVE_METADATAITEM(S32, "d"); + break; + case PS_DATA_S64: + FORMAT_PRIMITIVE_METADATAITEM(S64, PRId64); + break; + case PS_DATA_U8: + FORMAT_PRIMITIVE_METADATAITEM(U8, "u"); + break; + case PS_DATA_U16: + FORMAT_PRIMITIVE_METADATAITEM(U16, "u"); + break; + case PS_DATA_U32: + FORMAT_PRIMITIVE_METADATAITEM(U32, "u"); + break; + case PS_DATA_U64: + FORMAT_PRIMITIVE_METADATAITEM(U64, PRIu64); + break; + case PS_DATA_F32: + FORMAT_PRIMITIVE_METADATAITEM(F32, ".7g"); + break; + case PS_DATA_F64: + FORMAT_PRIMITIVE_METADATAITEM(F64, ".15g"); + break; + case PS_DATA_STRING: + if (item->data.str && strlen(item->data.str) > 0) { + psStringAppend(&content, "%-15s %-8s %-15s", + item->name, "STR", item->data.str); + } else { + psStringAppend(&content, "%-15s %-8s %-15s", + item->name, "STR", "NULL"); + } + if (item->comment && strncmp(item->comment,"",2)) { + psStringAppend(&content, " # %s", item->comment); + } + psStringAppend(&content, " \n"); + break; + case PS_DATA_METADATA: { + if (item->comment && strncmp(item->comment,"",2)) { + psStringAppend(&content, "\n%s METADATA # %s", item->name, item->comment); + } else { + psStringAppend(&content, "\n%s METADATA ", item->name); + } + + psString newStr = psMetadataConfigFormat(item->data.md); + if (newStr) { + // add 3 extra spaces to each metadata folder item + char *buf = strtok(newStr, "\n"); + while (buf != NULL) { + psStringAppend(&content, "\n %s", buf); + buf = strtok(NULL, "\n"); + } + psFree(newStr); + } + + psStringAppend(&content, "\nEND\n"); + break; + } + case PS_DATA_TIME: + psStringAppend(&content, "%-15s ", item->name); + psTime *time = item->data.V; + if (time) { + switch (time->type) { + case PS_TIME_UTC: + psStringAppend(&content, "%-8s ", "UTC"); + break; + case PS_TIME_TAI: + psStringAppend(&content, "%-8s ", "TAI"); + break; + case PS_TIME_UT1: + psStringAppend(&content, "%-8s ", "UT1"); + break; + case PS_TIME_TT: + psStringAppend(&content, "%-8s ", "TT"); + break; + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psTime type, %d, is not supported."), + time->type); + psFree(content); + return NULL; + } + psString timeStr = psTimeToISO(time); + psString timeOutput; + timeOutput = psStringNCopy(timeStr, 19); + psStringAppend(&content, "%s", timeOutput); + psStringAppend(&content, "Z"); + psFree(timeStr); + psFree(timeOutput); + } else { + // psTime is a NULL pointer + psStringAppend(&content, "%-8s %-15s", "TAI", "NULL"); + } + + if (item->comment && strncmp(item->comment,"",2)) { + psStringAppend(&content, " # %s", item->comment); + } + psStringAppend(&content, "\n"); + break; + case PS_DATA_VECTOR: + psStringAppend(&content, "@%s ", item->name); + psVector *vector = item->data.V; + + switch (vector->type.type) { + case PS_DATA_U8: + psStringAppend(&content, "U8 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%u ", vector->data.U8[i]); + } + break; + case PS_DATA_U16: + psStringAppend(&content, "U16 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%u ", vector->data.U16[i]); + } + break; + case PS_DATA_U32: + psStringAppend(&content, "U32 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%u ", vector->data.U32[i]); + } + break; + case PS_DATA_U64: + psStringAppend(&content, "U64 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%" PRIu64 " ", vector->data.U64[i]); + } + break; + case PS_DATA_S8: + psStringAppend(&content, "S8 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%d ", vector->data.S8[i]); + } + break; + case PS_DATA_S16: + psStringAppend(&content, "S16 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%d ", vector->data.S16[i]); + } + break; + case PS_DATA_S32: + psStringAppend(&content, "S32 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%d ", vector->data.S32[i]); + } + break; + case PS_DATA_S64: + psStringAppend(&content, "S64 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%" PRId64 " ", vector->data.S64[i]); + } + break; + case PS_DATA_F32: + psStringAppend(&content, "F32 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%.7g ", vector->data.F32[i]); + } + break; + case PS_DATA_F64: + psStringAppend(&content, "F64 "); + for (int i = 0; i < vector->n; i++) { + psStringAppend(&content, "%.15g ", vector->data.F64[i]); + } + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psDataType, %d, is not supported."), vector->type.type); + psFree(content); + return NULL; + } + if (item->comment && strncmp(item->comment, "", 2)) { + psStringAppend(&content, " # %s", item->comment); + } + psStringAppend(&content, "\n"); + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psDataType, %d, is not supported."), item->type); + psFree(content); + return NULL; + } + + return content; +} + + +static psArray *p_psMetadataKeyArray(psMetadata *md) +{ + PS_ASSERT_PTR_NON_NULL(md, NULL); + + psArray *keys = psArrayAllocEmpty(psListLength(md->list)); + + // since we want to preserve the order of the keys in the metadata we can't + // get a list of key names from the metadata's hash table. Instead we have + // to iterate through the metadata's list of items and reject duplicate key + // names. + + psMetadataItem *item = NULL; + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); +OUTSIDE: + while ((item = psMetadataGetAndIncrement(iter))) { + for (long i = 0; i < psArrayLength(keys); i++) { + // does this element have a value + psString elem = keys->data[i]; + if (elem) { + if(strcmp(elem, item->name) == 0) { + goto OUTSIDE; + } + } + } + psString string = psStringCopy(item->name); + psArrayAdd(keys, 0, string); + psFree(string); + } + psFree(iter); + return keys; +} + + +bool psMetadataConfigWrite(psMetadata *md, + const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(md, NULL); + PS_ASSERT_PTR_NON_NULL(filename, NULL); + FILE *file; + if ( !(file = fopen(filename, "w")) ) { + psError(PS_ERR_IO, true, + "Failed to open specified file, %s\n", filename); + return false; + } + psString fileString = NULL; + fileString = psMetadataConfigFormat(md); + if (fileString == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataConfigFormat returned NULL.\n"); + return false; + } + fprintf(file, "%s", fileString); + psFree(fileString); + if (fclose(file) == EOF) { + psError(PS_ERR_IO, true, + "Failed to close file, %s\n", filename); + return false; + } + return true; +} + +bool psMetadataConfigPrint(FILE *stream, + psMetadata *md) +{ + PS_ASSERT_PTR_NON_NULL(md, false); + PS_ASSERT_PTR_NON_NULL(stream, false); + if (fprintf(stream, "\n") <= 0) { + psError(PS_ERR_IO, false, + "Unable to write to specified file."); + return false; + } + + psString str = psMetadataConfigFormat(md); + if (!str) { + psError(PS_ERR_UNKNOWN, false, + _("failed to format metadata into a string.")); + return false; + } + + fprintf(stream, "%s", str); + psFree(str); + + return true; +} Index: /branches/rel-1-1/psLib/src/types/psMetadataConfig.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataConfig.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataConfig.h (revision 12167) @@ -0,0 +1,101 @@ +/** @file psMetadataConfig.h + * + * @brief Contains metadata input/output functions. + * + * This file defines functions to read and write metadata to/from an external file. + * + * @author EAM, IfA + * @author PAP, IfA + * @author JH, IfA + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.26 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#ifndef PS_METADATACONFIG_H +#define PS_METADATACONFIG_H + +#include "psMetadata.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/** Print metadata item to file. + * + * Metadata items may be printed to an open file descriptor based on a + * provided format. The format is a sprintf format statement with exactly + * one % formatting command. If the metadata item type is a numeric type, + * this formatting command must also be numeric, and the type conversion + * performed to the value to match the format type. If the metadata type is + * a string, the formatting command must also be for a string. If the + * metadata type is any other data type, printing is not allowed. + * + * @return psMetadataItem* : Pointer metadata item. + */ +bool psMetadataItemPrint( + FILE * fd, ///< Pointer to file to write metadata item. + const char *format, ///< Format to print metadata item. + const psMetadataItem* item ///< Metadata item to print. +); + +/** Read metadata configuration file. + * + * Loads pre-defined settings by parsing a configuration file into a psMetadata structure. + * + * @return psMetadata* : Resulting metadata from read. + */ +psMetadata* psMetadataConfigRead( + psMetadata* md, ///< Resulting metadata from read. + unsigned int *nFail, ///< Number of failed lines. + const char *filename, ///< Name of file to read. + bool overwrite ///< Allow overwrite of duplicate specifications. +); + +/** Parse metadata configuration string. + * + * Loads pre-defined settings by parsing a string into a psMetadata structure. + * + * @return psMetadata* : Resulting metadata from parse. + */ +psMetadata* psMetadataConfigParse( + psMetadata* md, ///< Resulting metadata from read. + unsigned int *nFail, ///< Number of failed lines. + const char *str, ///< String to process. + bool overwrite ///< Allow overwrite of duplicate specifications. +); + +/** Converts a psMetadata structure (including any nested psMetadata) into a + * configuration file formatted string. + * + * A NULL shall be returned on error. + * @return psString: a Configuration File formatted string. + */ +psString psMetadataConfigFormat( + psMetadata *md ///< The metadata to convert +); + +/** Converts a psMetadata structure (including any nested psMetadata) into a + * configuration file formatted string that is written out to filename. + * + * @return bool: True if successful, otherwise false. + */ +bool psMetadataConfigWrite( + psMetadata *md, ///< The metadata to convert + const char *filename ///< Name of file to write +); + +/** Converts a psMetadata structure (including any nested psMetadata) into a + * configuration file formatted string that is written a file stream. + * + * @return bool: True if successful, otherwise false. + */ +bool psMetadataConfigPrint( + FILE *stream, ///< file stream to write to + psMetadata *md ///< The metadata to convert +); + +/// @} +#endif // #ifndef PS_METADATAIO_H Index: /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.c (revision 12167) @@ -0,0 +1,87 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psType.h" +#include "psError.h" +#include "psAbort.h" +#include "psTrace.h" +#include "psMetadata.h" +#include "psMetadataItemCompare.h" + +bool psMetadataItemCompare(const psMetadataItem *compare, // Item to compare to the template + const psMetadataItem *template) // The template +{ + + // First order checks + if (! compare || ! template) { + return false; + } + if (strcmp(compare->name, template->name) + != 0) { + return false; + } + + + #define COMPARE_CASE(TEMPLATENAME, TEMPLATETYPE, COMPARENAME, COMPARETYPENAME) \ +case PS_TYPE_##COMPARETYPENAME: { \ + TEMPLATETYPE value = (TEMPLATETYPE)compare->data.COMPARENAME; \ + if (value != compare->data.COMPARENAME) { \ + return false; \ + } \ + return (template->data.TEMPLATENAME == value) ? true : false; \ + } + + #define TEMPLATE_CASE(TYPENAME, NAME, TYPE) \ +case PS_TYPE_##TYPENAME: \ + switch(compare->type) { \ + COMPARE_CASE(NAME, TYPE, B , BOOL); \ + COMPARE_CASE(NAME, TYPE, U8 , U8 ); \ + COMPARE_CASE(NAME, TYPE, U16, U16); \ + COMPARE_CASE(NAME, TYPE, U32, U32); \ + COMPARE_CASE(NAME, TYPE, S8 , S8 ); \ + COMPARE_CASE(NAME, TYPE, S16, S16); \ + COMPARE_CASE(NAME, TYPE, S32, S32); \ + COMPARE_CASE(NAME, TYPE, F32, F32); \ + COMPARE_CASE(NAME, TYPE, F64, F64); \ + default: \ + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Don't know how to compare types %x and %x\n", \ + compare->type, template->type); \ + return false; \ + } + + + switch (template->type) { + TEMPLATE_CASE(BOOL, B, bool) + ; + TEMPLATE_CASE(U8, U8, psU8 ); + TEMPLATE_CASE(U16, U16, psU16); + TEMPLATE_CASE(U32, U32, psU32); + TEMPLATE_CASE(S8, S8, psS8 ); + TEMPLATE_CASE(S16, S16, psS16); + TEMPLATE_CASE(S32, S32, psS32); + TEMPLATE_CASE(F32, F32, psF32); + TEMPLATE_CASE(F64, F64, psF64); + case PS_DATA_STRING: + if (compare->type != PS_DATA_STRING) { + return false; + } + psTrace("psLib.types", 10, "Comparing '%s' with '%s'\n", + compare->data.str, template-> + data.str); + return (strcasecmp(compare->data.V, template-> + data.V) == 0) ? true : false; + default: + // Simply don't know how to compare more complex types. + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Don't know how to compare types %x and %x\n", + compare->type, template->type); + return false; + } + + psAbort("Should never get here.\n"); + return false; +} Index: /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataItemCompare.h (revision 12167) @@ -0,0 +1,34 @@ +/** @file psMetadataItemCompare.h + * + * @brief Compares Metadata Items + * + * This file defines functions to compare psMetadataItem's. + * + * @author IFA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_METADATA_ITEM_COMPARE_H +#define PS_METADATA_ITEM_COMPARE_H + +#include "psMetadata.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/** Compares two psMetadataItems. + * + * @return bool: True if compare matches template, otherwise false. + */ +bool psMetadataItemCompare( + const psMetadataItem *compare, ///< Item to compare to the template + const psMetadataItem *template ///< The template +) +; + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/types/psMetadataItemParse.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataItemParse.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataItemParse.c (revision 12167) @@ -0,0 +1,286 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "psMemory.h" +#include "psAssert.h" +#include "psError.h" +#include "psMetadata.h" +#include "psMetadataItemParse.h" + +# define PS_METADATA_ITEM_PARSE_NUMBER(INTYPE,OUTTYPE) \ +case PS_DATA_##INTYPE: \ +return (ps##OUTTYPE)(item->data.INTYPE); \ + + +// NOTE: This function flows through so that errors may be handled by the "default" case. +#define PS_METADATA_ITEM_PARSE_STRING_FLOAT(OUTTYPE,FUNCTION) \ +case PS_DATA_STRING: { \ + char *end = NULL; \ + ps##OUTTYPE number = FUNCTION(item->data.V, &end); \ + if (end != item->data.V) { \ + return number; \ + } \ +} + +// NOTE: This function flows through so that errors may be handled by the "default" case. +#define PS_METADATA_ITEM_PARSE_STRING_INT(OUTTYPE,FUNCTION) \ +case PS_DATA_STRING: { \ + char *end = NULL; \ + ps##OUTTYPE number = FUNCTION(item->data.V, &end, 10); \ + if (end != item->data.V) { \ + return number; \ + } \ +} + +bool psMetadataItemParseBool(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, false); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(F64, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(S8, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(S16, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(S32, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(U8, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(U16, BOOL); + PS_METADATA_ITEM_PARSE_NUMBER(U32, BOOL); + case PS_DATA_BOOL: + return item->data.B; + case PS_DATA_STRING: + if (strcasecmp(item->data.V, "true") == 0) { + return true; + } else if (strcasecmp(item->data.V, "false") == 0) { + return false; + } + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of boolean type (%x) --- " + "treating as false.\n", item->name, item->comment, item->type); + return false; + } +} + +psF32 psMetadataItemParseF32(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, NAN); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, F32); + PS_METADATA_ITEM_PARSE_NUMBER(F64, F32); + PS_METADATA_ITEM_PARSE_NUMBER(S8, F32); + PS_METADATA_ITEM_PARSE_NUMBER(S16, F32); + PS_METADATA_ITEM_PARSE_NUMBER(S32, F32); + PS_METADATA_ITEM_PARSE_NUMBER(U8, F32); + PS_METADATA_ITEM_PARSE_NUMBER(U16, F32); + PS_METADATA_ITEM_PARSE_NUMBER(U32, F32); + PS_METADATA_ITEM_PARSE_STRING_FLOAT(F32, strtof); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of floating point type (%x) --- " + "treating as NaN.\n", item->name, item->comment, item->type); + return NAN; + } +} + +psF64 psMetadataItemParseF64(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, NAN); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, F64); + PS_METADATA_ITEM_PARSE_NUMBER(F64, F64); + PS_METADATA_ITEM_PARSE_NUMBER(S8, F64); + PS_METADATA_ITEM_PARSE_NUMBER(S16, F64); + PS_METADATA_ITEM_PARSE_NUMBER(S32, F64); + PS_METADATA_ITEM_PARSE_NUMBER(U8, F64); + PS_METADATA_ITEM_PARSE_NUMBER(U16, F64); + PS_METADATA_ITEM_PARSE_NUMBER(U32, F64); + PS_METADATA_ITEM_PARSE_STRING_FLOAT(F32, strtod); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of double-precision floating " + "point type (%x) --- treating as NaN.\n", item->name, item->comment, item->type); + return NAN; + } +} + +psU8 psMetadataItemParseU8(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, U8); + PS_METADATA_ITEM_PARSE_NUMBER(F64, U8); + PS_METADATA_ITEM_PARSE_NUMBER(S8, U8); + PS_METADATA_ITEM_PARSE_NUMBER(S16, U8); + PS_METADATA_ITEM_PARSE_NUMBER(S32, U8); + PS_METADATA_ITEM_PARSE_NUMBER(U8, U8); + PS_METADATA_ITEM_PARSE_NUMBER(U16, U8); + PS_METADATA_ITEM_PARSE_NUMBER(U32, U8); + PS_METADATA_ITEM_PARSE_STRING_INT(U8,strtoul); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +psU16 psMetadataItemParseU16(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, U16); + PS_METADATA_ITEM_PARSE_NUMBER(F64, U16); + PS_METADATA_ITEM_PARSE_NUMBER(S8, U16); + PS_METADATA_ITEM_PARSE_NUMBER(S16, U16); + PS_METADATA_ITEM_PARSE_NUMBER(S32, U16); + PS_METADATA_ITEM_PARSE_NUMBER(U8, U16); + PS_METADATA_ITEM_PARSE_NUMBER(U16, U16); + PS_METADATA_ITEM_PARSE_NUMBER(U32, U16); + PS_METADATA_ITEM_PARSE_STRING_INT(U16,strtoul); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +psU32 psMetadataItemParseU32(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, U32); + PS_METADATA_ITEM_PARSE_NUMBER(F64, U32); + PS_METADATA_ITEM_PARSE_NUMBER(S8, U32); + PS_METADATA_ITEM_PARSE_NUMBER(S16, U32); + PS_METADATA_ITEM_PARSE_NUMBER(S32, U32); + PS_METADATA_ITEM_PARSE_NUMBER(U8, U32); + PS_METADATA_ITEM_PARSE_NUMBER(U16, U32); + PS_METADATA_ITEM_PARSE_NUMBER(U32, U32); + PS_METADATA_ITEM_PARSE_STRING_INT(U32,strtoul); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +psS8 psMetadataItemParseS8(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, S8); + PS_METADATA_ITEM_PARSE_NUMBER(F64, S8); + PS_METADATA_ITEM_PARSE_NUMBER(S8, S8); + PS_METADATA_ITEM_PARSE_NUMBER(S16, S8); + PS_METADATA_ITEM_PARSE_NUMBER(S32, S8); + PS_METADATA_ITEM_PARSE_NUMBER(U8, S8); + PS_METADATA_ITEM_PARSE_NUMBER(U16, S8); + PS_METADATA_ITEM_PARSE_NUMBER(U32, S8); + PS_METADATA_ITEM_PARSE_STRING_INT(S8,strtol); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +psS16 psMetadataItemParseS16(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, S16); + PS_METADATA_ITEM_PARSE_NUMBER(F64, S16); + PS_METADATA_ITEM_PARSE_NUMBER(S8, S16); + PS_METADATA_ITEM_PARSE_NUMBER(S16, S16); + PS_METADATA_ITEM_PARSE_NUMBER(S32, S16); + PS_METADATA_ITEM_PARSE_NUMBER(U8, S16); + PS_METADATA_ITEM_PARSE_NUMBER(U16, S16); + PS_METADATA_ITEM_PARSE_NUMBER(U32, S16); + PS_METADATA_ITEM_PARSE_STRING_INT(S16,strtol); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +psS32 psMetadataItemParseS32(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, 0); + + switch (item->type) { + PS_METADATA_ITEM_PARSE_NUMBER(F32, S32); + PS_METADATA_ITEM_PARSE_NUMBER(F64, S32); + PS_METADATA_ITEM_PARSE_NUMBER(S8, S32); + PS_METADATA_ITEM_PARSE_NUMBER(S16, S32); + PS_METADATA_ITEM_PARSE_NUMBER(S32, S32); + PS_METADATA_ITEM_PARSE_NUMBER(U8, S32); + PS_METADATA_ITEM_PARSE_NUMBER(U16, S32); + PS_METADATA_ITEM_PARSE_NUMBER(U32, S32); + PS_METADATA_ITEM_PARSE_STRING_INT(S32,strtol); + // Flow through + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Item %s (%s) is not of integer type (%x) --- " + "treating as zero.\n", item->name, item->comment, item->type); + return 0; + } +} + +# define PS_METADATA_ITEM_PARSE_STRING(TYPE,MODE) \ +case PS_DATA_##TYPE: { \ + psString value = NULL; \ + psStringAppend(&value, MODE, item->data.TYPE); \ + return value; } \ + +psString psMetadataItemParseString(const psMetadataItem *item + ) +{ + PS_ASSERT_PTR_NON_NULL(item, NULL); + + switch (item->type) { + case PS_DATA_STRING: + return psMemIncrRefCounter(item->data.V); + + PS_METADATA_ITEM_PARSE_STRING(F32, "%f"); + PS_METADATA_ITEM_PARSE_STRING(F64, "%f"); + PS_METADATA_ITEM_PARSE_STRING(S8, "%d"); + PS_METADATA_ITEM_PARSE_STRING(S16, "%d"); + PS_METADATA_ITEM_PARSE_STRING(S32, "%d"); + PS_METADATA_ITEM_PARSE_STRING(U8, "%d"); + PS_METADATA_ITEM_PARSE_STRING(U16, "%d"); + PS_METADATA_ITEM_PARSE_STRING(U32, "%d"); + + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Item %s (%s) is not of string type (%x) --- treating as " + "undefined.\n", item->name, item->comment, item->type); + // return psStringCopy(""); + return NULL; + } +} + Index: /branches/rel-1-1/psLib/src/types/psMetadataItemParse.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psMetadataItemParse.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psMetadataItemParse.h (revision 12167) @@ -0,0 +1,35 @@ +/** @file psMetadataItemParse.h +* +* @brief Parse metadata items +* +* @author EAM, PAP, JH, RHL, +* +* @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 21:36:09 $ +* +* Copyright 2004-2005 IfA, University of Hawaii +*/ + +#ifndef PS_METADATA_ITEM_PARSE_H +#define PS_METADATA_ITEM_PARSE_H + +/// @addtogroup DataContainer Data Containers +/// @{ + +#include "psType.h" +#include "psMetadata.h" + +// Parse a psMetadataItem as a particular type +bool psMetadataItemParseBool(const psMetadataItem *item); +psF32 psMetadataItemParseF32(const psMetadataItem *item); +psF64 psMetadataItemParseF64(const psMetadataItem *item); +psS8 psMetadataItemParseS8(const psMetadataItem *item); +psS16 psMetadataItemParseS16(const psMetadataItem *item); +psS32 psMetadataItemParseS32(const psMetadataItem *item); +psU8 psMetadataItemParseU8(const psMetadataItem *item); +psU16 psMetadataItemParseU16(const psMetadataItem *item); +psU32 psMetadataItemParseU32(const psMetadataItem *item); +psString psMetadataItemParseString(const psMetadataItem *item); + +/// @} +#endif Index: /branches/rel-1-1/psLib/src/types/psPixels.c =================================================================== --- /branches/rel-1-1/psLib/src/types/psPixels.c (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psPixels.c (revision 12167) @@ -0,0 +1,456 @@ +/** @file psPixels.c + * + * @brief Contains psPixel related functions + * + * @ingroup Image + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.31 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 21:29:50 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include + +#include "psPixels.h" +#include "psMemory.h" +#include "psAssert.h" +#include "psError.h" + + +typedef int(*qsortCompareFcn)(const void *, const void *); + +static void pixelsFree(psPixels* pixels) +{ + psFree(pixels->data); +} + +// for use by qsort, etc. +static int comparePixelCoord(psPixelCoord* coord1, + psPixelCoord* coord2) +{ + // check row first + if (coord1->y < coord2->y) { + return -1; + } + + if (coord1->y > coord2->y) { + return 1; + } + + // rows are the same, so check column + if (coord1->x < coord2->x) { + return -1; + } + + if (coord1->x > coord2->x) { + return 1; + } + + return 0; +} + +psPixels* p_psPixelsAlloc(const char *file, + unsigned int lineno, + const char *func, + long nalloc) +{ + psPixels* out = p_psAlloc(file, lineno, func, sizeof(psPixels)); + + if (nalloc > 0) { + out->data = p_psAlloc(file, lineno, func, sizeof(psPixelCoord)*nalloc); + } else { + out->data = NULL; + } + out->n = 0; + P_PSPIXELS_SET_NALLOC(out,nalloc); + + psMemSetDeallocator(out, (psFreeFunc)pixelsFree); + + return out; +} + + +bool psMemCheckPixels(psPtr ptr) +{ + PS_ASSERT_PTR(ptr, false); + return ( psMemGetDeallocator(ptr) == (psFreeFunc)pixelsFree ); +} + + +psPixels* p_psPixelsRealloc(const char *file, + unsigned int lineno, + const char *func, + psPixels* pixels, + long nalloc) +{ + if (pixels == NULL) { + return p_psPixelsAlloc(file, lineno, func, nalloc); + } + + if (nalloc > 0) { + pixels->data = p_psRealloc(file, lineno, func, pixels->data, sizeof(psPixelCoord)*nalloc); + } else { + psFree(pixels->data); + pixels->data = NULL; + } + + P_PSPIXELS_SET_NALLOC(pixels,nalloc); + + if (pixels->n > pixels->nalloc) { + pixels->n = pixels->nalloc; + } + + return pixels; +} + +psPixels* p_psPixelsAppend(psPixels* pixels, + long growth, + float x, + float y) +{ + if (growth < 1) { + growth = 10; + } + + if ( (pixels == NULL) || (pixels->n >= pixels->nalloc) ) { + pixels=psPixelsRealloc(pixels, pixels->nalloc+growth); + } + + long n = pixels->n; + + pixels->data[n].x = x; + pixels->data[n].y = y; + + pixels->n++; + + return pixels; +} + +psPixels* p_psPixelsCopy(const char *file, + unsigned int lineno, + const char *func, + psPixels* out, + const psPixels* pixels) +{ + if (pixels == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL,true,_("Input psPixels can not be NULL.")); + psFree(out); + return NULL; + } + + out = p_psPixelsRealloc(file, lineno, func, out, pixels->n); + + memcpy(out->data,pixels->data, pixels->n*sizeof(psPixelCoord)); + out->n = pixels->n; + + return out; +} + +psImage *psPixelsToMask(psImage *out, + const psPixels *pixels, + psRegion region, + psMaskType maskVal) +{ + // check that the input pixel vector is valid + if (pixels == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Input psPixels can not be NULL.")); + psFree(out); + return NULL; + } + psPixelCoord* data = pixels->data; + if (data == NULL) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + _("Input psPixels contains no data.")); + psFree(out); + return NULL; + } + + float x0 = region.x0; + float x1 = region.x1; + float y0 = region.y0; + float y1 = region.y1; + + if ( (x0 < 0 || x1 < 0) || (y0 < 0 || y1 < 0) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psRegion, [%d:%d,%d:%d], does not specify a valid region."), + (int)y0,(int)y1,(int)x0,(int)x1); + psFree(out); + return NULL; + } + + // determine the output image size + int numRows = y1-y0; + int numCols = x1-x0; + numRows += 1; + numCols += 1; + if (numRows < 1 || numCols < 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Specified psRegion, [%d:%d,%d:%d], does not specify a valid region."), + (int)y0,(int)y1,(int)x0,(int)x1); + psFree(out); + return NULL; + } + + // allocate the output image + out = psImageRecycle(out, numCols, numRows, PS_TYPE_MASK); + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + _("Failed to create image of size %dx%d."), + numCols, numRows); + return NULL; + } + *(psS32*)&out->row0 = (int)y0; + *(psS32*)&out->col0 = (int)x0; + + // initialize image to all zeros + int columnByteSize = sizeof(psMaskType)*numCols; + for (int row = 0; row < numRows; row++) { + memset(out->data.U8[row],0,columnByteSize); + } + + // determine the length of the pixel vector + long length = pixels->n; + + // cycle through the vector of pixels and insert pixels into image + psMaskType** outData = out->data.PS_TYPE_MASK_DATA; + for (int p = 0; p < length; p++) { + float x = data[p].x; + float y = data[p].y; + // pixel in region? + if (x >= x0 && x <= x1 && y >= y0 && y <= y1) { + outData[(int)(y-y0)][(int)(x-x0)] |= maskVal; + } + } + + return out; +} + +psPixels* psPixelsFromMask(psPixels* out, + const psImage* mask, + psMaskType maskVal) +{ + if (mask == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Specified mask can not be NULL.")); + psFree(out); + return NULL; + } + if (mask->type.type != PS_TYPE_MASK) { + char* typeStr; + PS_TYPE_NAME(typeStr,mask->type.type); + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + _("Specified mask's type, %s, is invalid. Should be PS_TYPE_MASK."), + typeStr); + psFree(out); + return NULL; + } + int numRows = mask->numRows; + int numCols = mask->numCols; + + // assumption: number of masked pixels is relatively small compared to + // total pixels, so it is best to just start with a guess and resize if + // necessary + long minPixels = numRows*numCols/100; // initial guess, 1% of pixels masked + if (minPixels < 32) { // enforce a minimum size + minPixels = 32; + } + + // check out's validity (allocated/minimum size) + if (out == NULL || out->data == NULL || out->nalloc < minPixels) { + out = psPixelsRealloc(out,minPixels); + } + + // start with a blank list of pixels + out->n = 0; + + // find the mask pixels in the image + long numPixels = 0; + psPixelCoord* data = out->data; + int nalloc = out->nalloc; + for (int row=0; rowdata.PS_TYPE_MASK_DATA[row]; + for (int col=0; colnalloc; + data = out->data; + } + + data[numPixels].x = col; + data[numPixels].y = row; + numPixels++; + } + } + } + out->n = numPixels; + + return out; +} + +psPixels* psPixelsConcatenate(psPixels *out, + const psPixels *pixels) +{ + if (pixels == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + _("Input psPixels can not be NULL.")); + psFree(out); + return NULL; + } + + long pixelsN = pixels->n; + psPixelCoord* pixelsData = pixels->data; + + if (out == NULL) { + // simple copy pixels + out = psPixelsCopy(out,pixels); + return out; + } + + // make sure the out is large enough to fit the result + long outN = out->n; + out = psPixelsRealloc(out,outN + pixelsN); + psPixelCoord* outData = out->data; + + // sort the OUT array to help in searching for duplicates later + qsort(outData, outN, sizeof(psPixelCoord), + (qsortCompareFcn)comparePixelCoord); + + // add non-duplicate values in pixels to out + psPixelCoord pCoord; + long end = outN; + for (long n = 0; n < pixelsN; n++) { + pCoord = pixelsData[n]; + if (bsearch(&pCoord, outData, outN, sizeof(psPixelCoord), + (qsortCompareFcn)comparePixelCoord) == NULL) { + // no match in OUT array of this value + outData[end++] = pCoord; + } + } + out->n = end; // set number of elements to reflect added data + + return out; +} + +bool p_psPixelsPrint (FILE *fd, + psPixels* pixels, + const char *name) +{ + if (fd == NULL) { + fd = stdout; + } else { + if ( fprintf(fd, "\n") < 0 ) { + psError(PS_ERR_IO, true, + "Invalid file pointer in p_psPixelsPrint. Could not write to fd.\n"); + return false; + } + } + + if (name != NULL) { + fprintf (fd, "psPixels: %s\n", name); + } + + if (pixels == NULL) { + fprintf(fd,"NULL\n\n"); + return true; + } + + long n = pixels->n; + psPixelCoord* data = pixels->data; + + if (data == NULL || n == 0) { + fprintf(fd,"EMPTY\n\n"); + return true; + } + + for (long i = 0; i < n; i++) { + fprintf (fd, "(%f,%f)\n", data[i].x, data[i].y); + } + fprintf (fd, "\n"); + return (true); +} + +bool psPixelsSet(psPixels *pixels, + long position, + psPixelCoord value) +{ + if (pixels == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("Input psPixels can not be NULL.")); + return false; + } + if (position > pixels->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Number too large\n"); + return false; + } + if(position < 0) { + position += pixels->n; + } + if(position < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + return false; + } + if (position == pixels->n) { + if (position >= pixels->nalloc) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Specified position, %ld, is greater than n+1 of the pixels, %ld.", + position, pixels->nalloc); + return false; + } + pixels->n++; + } + pixels->data[position].x = value.x; + pixels->data[position].y = value.y; + + return true; +} + +psPixelCoord psPixelsGet(const psPixels *pixels, + long position) +{ + psPixelCoord out; + if (pixels == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, _("Input psPixels can not be NULL.")); + out.x = NAN; //XXX: should be NAN when changed to float + out.y = NAN; //XXX: should be NAN when changed to float + return out; + } + if (position >= pixels->n) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Number too large\n"); + out.x = NAN; //XXX: should be NAN when changed to float + out.y = NAN; //XXX: should be NAN when changed to float + return out; + } + if (position < 0) { + position += pixels->n; + } + if (position < 0) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Invalid position. Negative number too large\n"); + out.x = NAN; //XXX: should be NAN when changed to float + out.y = NAN; //XXX: should be NAN when changed to float + return out; + } + out.x = pixels->data[position].x; + out.y = pixels->data[position].y; + return out; +} + +long psPixelsLength(const psPixels *pixels) +{ + if ( !psMemCheckPixels((psPixels*)pixels) ) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, + "Error: Specified pixels is not a valid psPixels \n"); + return -1; + } + return (pixels->n); +} + Index: /branches/rel-1-1/psLib/src/types/psPixels.h =================================================================== --- /branches/rel-1-1/psLib/src/types/psPixels.h (revision 12167) +++ /branches/rel-1-1/psLib/src/types/psPixels.h (revision 12167) @@ -0,0 +1,246 @@ +/** @file psPixels.h + * + * @brief Contains psPixel related functions + * + * @author Paul Price, IfA + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.25 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-08 21:29:50 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_PIXELS_H +#define PS_PIXELS_H + +#include "psImage.h" +#include "psVector.h" +#include "psRegion.h" + +/// @addtogroup DataContainer Data Containers +/// @{ + +/** Data structure for storing psPixel coordinates */ +typedef struct +{ + float x; ///< x coordinate + float y; ///< y coordinate +} +psPixelCoord; + +/** list of pixel coordinates + * + * Usually an image mask is the best way to carry information about what + * pixels mean what. However, in the case where the number of pixels in which + * we are interested is limited, it is more efficient to simply carry a list + * of pixels. An example of this is in the image combination code, where we + * want to perform an operation on a relatively small fraction of pixels, and + * it is inefficient to go through an entire mask image checking each pixel. + * + */ +typedef struct +{ + long n; ///< Number in use + const long nalloc; ///< Number allocated + psPixelCoord* data; ///< The pixel coordinates + void *lock; ///< Option lock for thread safety +} +psPixels; + +#define P_PSPIXELS_SET_NALLOC(pix,n) *(long*)&pix->nalloc = n + + +/** Allocates a new psPixels structure + * + * @return psPixels* new psPixels + */ +#ifdef DOXYGEN +psPixels* psPixelsAlloc( + long nalloc ///< the size of the coordinate vectors +); +#else // ifdef DOXYGEN +psPixels* p_psPixelsAlloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + long nalloc ///< the size of the coordinate vectors +); +#define psPixelsAlloc(nalloc) \ + p_psPixelsAlloc(__FILE__, __LINE__, __func__, nalloc) +#endif // ifdef DOXYGEN + + +/** Checks the type of a particular pointer. + * + * Uses the appropriate deallocation function in psMemBlock to check the ptr + * datatype. + * + * @return bool: True if the pointer matches a psPixels structure, false otherwise. + */ +bool psMemCheckPixels( + psPtr ptr ///< the pointer whose type to check +); + + +/** resizes a psPixels structure + * + * @return psPixels* resized psPixels + */ +#ifdef DOXYGEN +psPixels* psPixelsRealloc( + psPixels* pixels, ///< psPixels to resize, or NULL to create new psPixels + long nalloc ///< the size of the coordinate vectors +); +#else // ifdef DOXYGEN +psPixels* p_psPixelsRealloc( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psPixels* pixels, ///< psPixels to resize, or NULL to create new psPixels + long nalloc ///< the size of the coordinate vectors +); +#define psPixelsRealloc(pixels, nalloc) \ + p_psPixelsRealloc(__FILE__, __LINE__, __func__, pixels, nalloc) +#endif // ifdef DOXYGEN + + +/** Add a pixel location to a psPixels + * + * Grow the psPixels input by growth. If growth is less that 1, 10 is used. If a NULL + * psPixels is given, a new one is created. + * + * @return psPixels* psPixels with the value appended. + */ +psPixels* p_psPixelsAppend( + psPixels* pixels, ///< psPixels to append new coordinate to. + long growth, ///< Number of elements to grow the pixels list if necessary. + float x, ///< x coordinate to append + float y ///< y coordinate to append +); + + +/** Copies a psPixels object + * + * Makes a deep copy of the data in a psPixels object. Any data in the OUT + * parameter will be destroyed and OUT will be resized, if necessary. + * + * @return psPixels* a new psPixels that is a duplicate to IN + */ +#ifdef DOXYGEN +psPixels* psPixelsCopy( + psPixels* out, ///< psPixels struct to recycle, or NULL + const psPixels* pixels ///< psPixels struct to copy +); +#else // ifdef DOXYGEN +psPixels* p_psPixelsCopy( + const char *file, ///< File of caller + unsigned int lineno, ///< Line number of caller + const char *func, ///< Function name of caller + psPixels* out, ///< psPixels struct to recycle, or NULL + const psPixels* pixels ///< psPixels struct to copy +); +#define psPixelsCopy(out, pixels) \ + p_psPixelsCopy(__FILE__, __LINE__, __func__, out, pixels) +#endif // ifdef DOXYGEN + + +/** Generate a psImage from a psPixels + * + * psPixelsToMask shall return an image of type U8 with the pixels lying + * within the specified region set to the maskVal. The out image shall be + * modified if supplied, or allocated and returned if NULL. The size of the + * output image shall be region->x1 - region->x0 by region->y1 - region->y0, + * with out->x0 = region->x0 and out->y0 = region->y0. In the event that + * either of pixels or region are NULL, the function shall generate an + * error and return NULL. + * + * @return psImage* generated mask image + */ +psImage* psPixelsToMask( + psImage* out, ///< psImage to recycle, or NULL + const psPixels* pixels, ///< list of pixels to use + psRegion region, ///< region to define the output mask image + psMaskType maskVal ///< the mask bit-values to act upon +); + + +/** Generate a psPixels from a mask psImage + * + * psMaskToPixels shall return a psPixels consisting of the coordinates in + * the mask that match the maskVal. The out pixel list shall be modified if + * supplied, or allocated and returned if NULL. In hte event that mask is + * NULL, the function shall generate an error and return NULL. + * + * @return psPixels* generated psPixels pixel list + */ +psPixels* psPixelsFromMask( + psPixels *out, ///< psPixels to recycle, or NULL + const psImage *mask, ///< the input mask psImage + psMaskType maskVal ///< the mask bit-values to act upon +); + + +/** Concatenates two psPixels + * + * psPixelsConcatenate shall concatenate pixels onto out. In the event that + * out is NULL, a new psPixels shall be allocated, and the contents of + * pixels simply copied in. If pixels is NULL, the function shall generate + * an error and return NULL. The function shall take care to ensure that + * there are no duplicate pixels in out. + * + * @return psPixels Concatenated psPixel list + */ +psPixels* psPixelsConcatenate( + psPixels *out, ///< psPixels to recycle, or NULL + const psPixels *pixels ///< psPixels to append to OUT +); + + +/** Prints a psPixels to specified destination. + * + * @return bool: True if successful. +*/ +bool p_psPixelsPrint( + FILE *fd, ///< destination file descriptor + psPixels* pixels, ///< psPixels to print + const char *name ///< printf-style format of header line +); + + +/** Sets the value of the the pixels array at the specified position to value. + * + * A negative position means index from the end. + * + * @return bool: True if Successful, otherwise false. +*/ +bool psPixelsSet( + psPixels *pixels, ///< pixels to set + long position, ///< position to set + psPixelCoord value ///< pixels value to be set +); + + +/** Returns the value of the pixels array at the specified position. + * + * A negative position means index from the end. + * + * @return psPixelCoord: The value of the pixels at the specified position. +*/ +psPixelCoord psPixelsGet( + const psPixels *pixels, ///< input pixels from which to get + long position ///< position to get +); + + +/** Get the number of elements in use from a specified psPixels. (pixels.n) + * + * @return long: The number of elements in use. + */ +long psPixelsLength( + const psPixels *pixels ///< input psPixels +); + + +/// @} +#endif // #ifndef PS_PIXELS_H Index: /branches/rel-1-1/psLib/src/types/types.i =================================================================== --- /branches/rel-1-1/psLib/src/types/types.i (revision 12167) +++ /branches/rel-1-1/psLib/src/types/types.i (revision 12167) @@ -0,0 +1,10 @@ +/* types headers */ + +%include "psArray.h" +%include "psBitSet.h" +%include "psHash.h" +%include "psList.h" +%include "psLookupTable.h" +%include "psMetadataConfig.h" +%include "psMetadata.h" +%include "psPixels.h" Index: /branches/rel-1-1/psLib/src/xml/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/src/xml/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/src/xml/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +*.loT +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/src/xml/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/src/xml/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/src/xml/Makefile.am (revision 12167) @@ -0,0 +1,14 @@ +#Makefile for xml functions of psLib +# +noinst_LTLIBRARIES = libpslibxml.la + +libpslibxml_la_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) $(XML_CFLAGS) +libpslibxml_la_SOURCES = \ + psXML.c + +EXTRA_DIST = xml.i + +pkginclude_HEADERS = \ + psXML.h + +CLEANFILES = *~ *.bb *.bbg *.da Index: /branches/rel-1-1/psLib/src/xml/psXML.c =================================================================== --- /branches/rel-1-1/psLib/src/xml/psXML.c (revision 12167) +++ /branches/rel-1-1/psLib/src/xml/psXML.c (revision 12167) @@ -0,0 +1,634 @@ +/** @file psXML.c +* +* @brief Contains basic XML definitions and operations +* +* This file defines the basic type for an XML struct and functions useful +* in creation and usage of XML documents/files. +* +* @ingroup XML +* +* @author David Robbins, MHPCC +* +* @version $Revision: 1.48 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-10-12 23:43:58 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psXML.h" +#include "psAssert.h" +#include +#include + +/******************************************************************************/ +/* DEFINE STATEMENTS */ +/******************************************************************************/ + +/** Maximum size of a string */ +#define MAXSTR 256 +#define MAXVEC 2048 +#define MAXBUF 10000 + + +static void XMLFree(psXMLDoc *XML) +{ + xmlFreeDoc(*XML); +} + +psXMLDoc *psXMLDocAlloc(void) +{ + psXMLDoc *XML; + XML = psAlloc(sizeof(psXMLDoc)); + psMemSetDeallocator(XML, (psFreeFunc) XMLFree); + return(XML); +} + +psXMLDoc *psMetadataToXMLDoc(const psMetadata *md) +{ + PS_ASSERT_PTR_NON_NULL(md, NULL); + + psXMLDoc *XML = psXMLDocAlloc(); + xmlNode *cur_node = NULL; + xmlNode *root = NULL; + xmlAttr *prop = NULL; + psDataType type; + char content[MAXSTR]; + char vec[MAXVEC]; + char timeVal[MAXSTR]; + int i; + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + psMetadataItem *item; + + //setup root element + if( root == NULL ) { + *XML = xmlNewDoc((const xmlChar*)"1.0"); + root = xmlNewDocNode(*XML, NULL, (const xmlChar*)"metadata", (const xmlChar*)"\n"); + xmlDocSetRootElement(*XML, root); + } + item = psMetadataGetAndIncrement(iter); + while ( item != NULL ) { + type = item->type; + switch (type) { + case PS_DATA_BOOL: + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"item", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"BOOL"); + if ( item->data.B ) + strncpy(content, "TRUE", MAXSTR); + else + strncpy(content, "FALSE", MAXSTR); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)content); + break; + case PS_DATA_S32: + snprintf(content, MAXSTR, "%d", item->data.S32); + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"item", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"S32"); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)content); + break; + case PS_DATA_F32: + snprintf(content, MAXSTR, "%f", item->data.F32); + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"item", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"F32"); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)content); + break; + case PS_DATA_F64: + snprintf(content, MAXSTR, "%lf", item->data.F64); + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"item", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"F64"); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)content); + break; + case PS_DATA_STRING: + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"item", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"STR"); + strncpy(content, item->data.str, MAXSTR); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)content); + break; + case PS_DATA_METADATA: + i = 0; + psXMLDoc *newDoc; + xmlNode *new_root = NULL; + xmlNode *new_node = NULL; + newDoc = psMetadataToXMLDoc(item->data.md); + new_root = xmlDocGetRootElement(*newDoc); + prop = xmlNewProp(new_root, (const xmlChar*)"name", (const xmlChar*)item->name); + prop = xmlNewProp(new_root, (const xmlChar*)"psType", (const xmlChar*)"METADATA"); + new_node = xmlAddSibling(cur_node, new_root); + psFree(newDoc); + break; + case PS_DATA_TIME: + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"time", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + if ( ((psTime*)(item->data.V))->type == PS_TIME_UTC ) + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"PS_TIME_UTC"); + else if ( ((psTime*)(item->data.V))->type == PS_TIME_TAI ) + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"PS_TIME_TAI"); + else if ( ((psTime*)(item->data.V))->type == PS_TIME_UT1 ) + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"PS_TIME_UT1"); + else if ( ((psTime*)(item->data.V))->type == PS_TIME_TT ) + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"PS_TIME_TT"); + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + return NULL; + } + snprintf(content, MAXSTR, "%ld, ", (long)((psTime*)(item->data.V))->sec); + strncpy(timeVal, content, MAXSTR); + snprintf(content, MAXSTR, "%u, ", ((psTime*)(item->data.V))->nsec); + strncat(timeVal, content, MAXSTR); + if ( ((psTime*)(item->data.V))->leapsecond ) + strncat(timeVal, "T", MAXSTR); + else + strncat(timeVal, "F", MAXSTR); + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)timeVal); + break; + case PS_DATA_VECTOR: + cur_node = xmlNewChild(root, NULL, (const xmlChar*)"vector", (const xmlChar*)"\n"); + prop = xmlNewProp(cur_node, (const xmlChar*)"name", (const xmlChar*)item->name); + type = ((psVector*)(item->data.V))->type.type; + strncpy(vec, "", MAXSTR); + switch (type) { + case PS_DATA_S32: + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"S32"); + for (i = 0; ((psVector*)(item->data.V))->data.S32[i] != 0; i++) { + snprintf(content, MAXSTR, "%d", + ((psVector*)(item->data.V))->data.S32[i]); + if ( ((psVector*)(item->data.V))->data.S32[i+1] != 0 ) { + strncat(content, ", ", 2); + } + strncat(vec, content, MAXSTR); + } + break; + case PS_DATA_F32: + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"F32"); + for (i = 0; ((psVector*)(item->data.V))->data.F32[i] != 0; i++) { + snprintf(content, MAXSTR, "%f", + ((psVector*)(item->data.V))->data.F32[i]); + if ( ((psVector*)(item->data.V))->data.F32[i+1] != 0 ) { + strncat(content, ", ", 2); + } + strncat(vec, content, MAXSTR); + } + break; + case PS_DATA_F64: + prop = xmlNewProp(cur_node, (const xmlChar*)"psType", (const xmlChar*)"F64"); + for (i = 0; ((psVector*)(item->data.V))->data.F64[i] != 0; i++) { + snprintf(content, MAXSTR, "%lf", + ((psVector*)(item->data.V))->data.F64[i]); + if ( ((psVector*)(item->data.V))->data.F64[i+1] != 0 ) { + strncat(content, ", ", 2); + } + strncat(vec, content, MAXSTR); + } + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize datatype from/for XML file.")); + psFree(XML); + psFree(iter); + return NULL; + } + prop = xmlNewProp(cur_node, (const xmlChar*)"value", (const xmlChar*)vec); + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize datatype from/for XML file.")); + psFree(XML); + psFree(iter); + return NULL; + } + item = psMetadataGetAndIncrement(iter); + } + // xmlSaveFormatFile("xmlfname", *XML, 1); + psFree(iter); + return XML; +} + +//compares strings and returns the correct data type// +static psDataType getType(const char *in) +{ + //Returns types S32, F32, F64, STRING, BOOL, or UNKNOWN on ERROR + if ( !strncmp(in, "S32", MAXSTR) ) { + return(PS_DATA_S32); + } else if ( !strncmp(in, "F32", MAXSTR) ) { + return(PS_DATA_F32); + } else if ( !strncmp(in, "F64", MAXSTR) ) { + return(PS_DATA_F64); + } else if ( !strncmp(in, "STR", MAXSTR) ) { + return(PS_DATA_STRING); + } else if ( !strncmp(in, "BOOL", MAXSTR) ) { + return(PS_DATA_BOOL); + } + + return(PS_DATA_UNKNOWN); +} + +static void storeValues(psVector *inVector, char *in, psDataType type) +{ + int i; + char *endp; + + switch (type) { + case PS_DATA_S32: + i = 0; + int intValue = 0; + while (i < MAXSTR) { + intValue = (int)strtol(in, &endp, 10); + if ( intValue != 0 ) { + inVector->data.S32[i] = intValue; + i++; + while (!strncmp(endp, ",", 1)) + endp++; + in = endp; + } else + i = MAXSTR; + } + break; + case PS_DATA_F32: + i = 0; + float floatValue = 0.0; + while (i < MAXSTR) { + floatValue = strtof(in, &endp); + if ( floatValue != 0.0 ) { + inVector->data.F32[i] = floatValue; + i++; + while (!strncmp(endp, ",", 1)) + endp++; + in = endp; + } else + i = MAXSTR; + } + + break; + case PS_DATA_F64: + i = 0; + double doubleValue = 0.0; + while (i < MAXSTR) { + doubleValue = strtod(in, &endp); + if ( doubleValue != 0.0 ) { + inVector->data.F64[i] = doubleValue; + i++; + while (!strncmp(endp, ",", 1)) + endp++; + in = endp; + } else + i = MAXSTR; + } + break; + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize datatype from/for XML file.")); + } +} + +static void storeTime(psTime *out, char *in) +{ + char *endp; + long sec = 0; + unsigned int nsec = 0; + + sec = strtol(in, &endp, 10); + out->sec = sec; + if ( !strncmp(endp, ",", 1) ) + endp++; + else + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + in = endp; + nsec = (unsigned int)strtol(in, &endp, 10); + out->nsec = nsec; + if ( !strncmp(endp, ",", 1) ) + endp++; + else + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + in = endp; + if ( !strncmp(in, "false", 10) || !strncmp(in, "f", 10) || + !strncmp(in, "FALSE", 10) || !strncmp(in, " F", 10) ) + out->leapsecond = false; + else if ( !strncmp(in, "true", 10) || !strncmp(in, "t", 10) || + !strncmp(in, "TRUE", 10) || !strncmp(in, "T", 10) ) + out->leapsecond = true; + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + } +} + +//Check the xml item for errors. Returns the data type or PS_DATA_UNKNOWN for errors.// +static psDataType chkType(xmlNode *node) +{ + //NEED TO CHECK CONTENTS OF EACH ITEM/NODE // + //if item then, + if(!strncmp((const char*)node->name, "item", MAXSTR) || !strncmp((const char*)node->name, "ITEM", MAXSTR)) { + if (node->properties != NULL && node->properties->name != NULL + && node->properties->next != NULL && node->properties->next->name != NULL + && node->properties->next->next != NULL + && node->properties->next->next->name != NULL) { + psDataType type = getType((const char*)node->properties->next->children->content); + return type; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + return(PS_DATA_UNKNOWN); + } + } + //if vector then, + if(!strncmp((const char*)node->name, "vector", MAXSTR) || !strncmp((const char*)node->name, "VECTOR", MAXSTR)) { + if (node->properties != NULL && node->properties->name != NULL + && node->properties->next != NULL && node->properties->next->name != NULL + && node->properties->next->next != NULL + && node->properties->next->next->name != NULL) { + return(PS_DATA_VECTOR); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + return(PS_DATA_UNKNOWN); + } + + } + //if metadata then, + if(!strncmp((const char*)node->name, "metadata", MAXSTR)) { + if (node->properties != NULL && node->properties->name + && node->properties->next != NULL && node->properties->next->name != NULL) { + return(PS_DATA_METADATA); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + return(PS_DATA_UNKNOWN); + } + } + if(!strncmp((const char*)node->name, "time", MAXSTR) || !strncmp((const char*)node->name, "TIME", MAXSTR) ) { + if (node->properties != NULL && node->properties->name + && node->properties->next != NULL && node->properties->next->name != NULL) { + return(PS_DATA_TIME); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + return(PS_DATA_UNKNOWN); + } + } + return(PS_DATA_UNKNOWN); +} + +//Sorts the xmlDocPtr data into a usable Metadata structure. Transverses an xml tree.// +static psMetadata *xml2metadata(xmlNode *nodePtr, int nodeNum) +{ + psMetadata *meta = NULL; + xmlNode *cur_node = NULL; + char name[MAXSTR]; + char content[MAXSTR]; + // char *name = NULL; + // char *content = NULL; + psDataType type = PS_DATA_UNKNOWN; + psDataType elemType = PS_DATA_UNKNOWN; + + meta = psMetadataAlloc(); + cur_node = nodePtr; + + // for ( cur_node = nodePtr; cur_node != NULL; cur_node = cur_node->next ) + while (cur_node != NULL) { + if ( cur_node->type == XML_ELEMENT_NODE ) { + //if the root node isn't a metadata// + if ( nodeNum == 0 && strncmp((const char*)cur_node->name, "metadata", MAXSTR) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + psFree(meta); + return NULL; + } + + if ( nodeNum != 0 ) { + type = chkType(cur_node); + //name = NULL; + //content = NULL; + switch ( type ) { + case PS_DATA_S32: + strncpy(name, (char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (char*)cur_node->properties->next->next->children->content, MAXSTR); + psMetadataAddS32(meta, PS_LIST_TAIL, name, 0, "", + (int)strtol(content, NULL, 10)); + break; + case PS_DATA_F32: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (const char*)cur_node->properties->next->next->children->content, MAXSTR); + psMetadataAddF32(meta, PS_LIST_TAIL, name, 0, "", strtof(content, NULL)); + break; + case PS_DATA_F64: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (const char*)cur_node->properties->next->next->children->content, MAXSTR); + psMetadataAddF64(meta, PS_LIST_TAIL, name, 0, "", strtod(content, NULL)); + break; + case PS_DATA_STRING: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + psMetadataAddStr(meta, PS_LIST_TAIL, name, 0, "", + (const char*)cur_node->properties->next->next->children->content); + break; + case PS_DATA_VECTOR: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (const char*)cur_node->properties->next->next->children->content, MAXSTR); + elemType = getType((const char*)cur_node->properties->next->children->content); + if (elemType == PS_DATA_UNKNOWN || elemType == PS_DATA_STRING + || elemType == PS_DATA_BOOL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize datatype from/for XML file.")); + psFree(meta); + return NULL; + } + + psVector *vec = psVectorAlloc(strlen(content), elemType); + storeValues(vec, content, elemType); + psMetadataAddVector(meta, PS_LIST_TAIL, name, 0, "", vec); + psFree(vec); + break; + case PS_DATA_TIME: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (const char*)cur_node->properties->next->next->children->content, MAXSTR); + psTimeType timeType; + char type[MAXSTR]; + strncpy(type, (const char*)cur_node->properties->next->children->content, MAXSTR); + if ( !strncmp(type, "PS_TIME_UTC", MAXSTR) ) + timeType = PS_TIME_UTC; + else if ( !strncmp(type, "PS_TIME_TAI", MAXSTR) ) + timeType = PS_TIME_TAI; + else if ( !strncmp(type, "PS_TIME_UT1", MAXSTR) ) + timeType = PS_TIME_UT1; + else if ( !strncmp(type, "PS_TIME_TT", MAXSTR) ) + timeType = PS_TIME_TT; + else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + psFree(meta); + return NULL; + } + + psTime *time; + time = psTimeAlloc(timeType); + storeTime(time, content); + psMetadataAddTime(meta, PS_LIST_TAIL, name, 0, "", time); + psFree(time); + break; + case PS_DATA_METADATA: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + psMetadata *temp = NULL; + temp = xml2metadata(cur_node->children, nodeNum); + psMetadataAddMetadata(meta, PS_LIST_TAIL, name, 0, "", temp); + psFree(temp); + break; + case PS_DATA_BOOL: + strncpy(name, (const char*)cur_node->properties->children->content, MAXSTR); + strncpy(content, + (const char*)cur_node->properties->next->next->children->content, MAXSTR); + if ( !strncmp(content, "true", MAXSTR) || + !strncmp(content, "TRUE", MAXSTR) || + !strncmp(content, "T", MAXSTR) || + !strncmp(content, "t", MAXSTR) ) { + psMetadataAddBool(meta, PS_LIST_TAIL, name, 0, "", true); + } else if ( !strncmp(content, "false", MAXSTR) || + !strncmp(content, "FALSE", MAXSTR) || + !strncmp(content, "F", MAXSTR) || + !strncmp(content, "f", MAXSTR) ) { + psMetadataAddBool(meta, PS_LIST_TAIL, name, 0, "", false); + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize XML content. Invalid syntax.")); + psFree(meta); + return NULL; + } + break; + case PS_DATA_UNKNOWN: + default: + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + _("Failed to recognize datatype from/for XML file.")); + psFree(meta); //XXX: Do I really need this? + return NULL; + } + nodeNum++; + } else //if root node, then increment nodeNum and go to children// + { + nodeNum++; + cur_node = cur_node->children; + } + } + cur_node = cur_node->next; + } + psFree(cur_node); + return meta; +} + +psMetadata *psXMLDocToMetadata(const psXMLDoc *doc) +{ + PS_ASSERT_PTR_NON_NULL(doc, NULL); + // psMetadata *md = psMetadataAlloc(); + psMetadata *md = NULL; + xmlNode *root_element = NULL; + //XXX: doc changed to *doc + root_element = xmlDocGetRootElement(*doc); + md = xml2metadata(root_element, 0); + return md; +} + +psXMLDoc *psXMLParseFile(const char *filename) +{ + + PS_ASSERT_PTR_NON_NULL(filename, NULL); + psXMLDoc *XML; + XML = psXMLDocAlloc(); + *XML = xmlReadFile(filename, NULL, 0); + + xmlCleanupParser(); + xmlMemoryDump(); + return XML; +} + +bool psXMLDocToFile(const psXMLDoc *doc, + const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(doc, 0); + PS_ASSERT_PTR_NON_NULL(filename, 0); + FILE *file; + if( (file = fopen(filename, "w")) == NULL ) { + psError(PS_ERR_IO, true, _("Failed to open file '%s'. Check if it exists and it has the proper permissions."), filename); + return false; + } + + xmlDocDump(file, *doc); + fclose(file); + return true; +} + +psXMLDoc *psXMLParseMem(const char *buffer, + int size) +{ + PS_ASSERT_PTR_NON_NULL(buffer, NULL); + PS_ASSERT_INT_NONZERO(size, NULL); + char *URL = "new.xml"; + psXMLDoc *XML; + XML = psXMLDocAlloc(); + *XML = xmlReadMemory(buffer, size, URL, NULL, 0); + + xmlCleanupParser(); + xmlMemoryDump(); + + return XML; +} + +bool psXMLDocToMem(const psXMLDoc *doc, + char *buffer) +{ + PS_ASSERT_PTR_NON_NULL(doc, 0); + int bufferSize; + xmlChar *buff; + + xmlDocDumpMemory(*doc, &buff, &bufferSize); + if ( MAXVEC < strlen((char *)buff) ) { + psError(PS_ERR_LOCATION_INVALID, true, _("Buffer to small to store XML doc.")); + // xmlFree(buff); + return false; + } + strncpy(buffer, (const char*)buff, MAXVEC); + xmlFree(buff); + + return true; +} + +psXMLDoc *psXMLParseFD(int fd) +{ + PS_ASSERT_INT_NONNEGATIVE(fd, NULL); + char *URL = "new.xml"; + psXMLDoc *XML; + XML = psXMLDocAlloc(); + *XML = xmlReadFd(fd, URL, NULL, 0); + + xmlCleanupParser(); + xmlMemoryDump(); + + return XML; +} + +bool psXMLDocToFD(const psXMLDoc *doc, + int fd) +{ + PS_ASSERT_PTR_NON_NULL(doc, 0); + PS_ASSERT_INT_NONNEGATIVE(fd, 0); + + char buf[MAXBUF]; + int n; + if ( psXMLDocToMem(doc, buf) ) { + n = strlen(buf); + write(fd, buf, n); + } else { + psError(PS_ERR_LOCATION_INVALID, true, _("Buffer to small to store XML doc.")); + return false; + } + return true; +} Index: /branches/rel-1-1/psLib/src/xml/psXML.h =================================================================== --- /branches/rel-1-1/psLib/src/xml/psXML.h (revision 12167) +++ /branches/rel-1-1/psLib/src/xml/psXML.h (revision 12167) @@ -0,0 +1,120 @@ +/* @file psXML.h + * @brief Contains basic XML definitions and operations + * + * This file defines the basic type for an XML struct and functions useful + * in creation and usage of XML documents/files. + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.21 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-23 22:47:23 $ + * Copyright 2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PS_XML_H +#define PS_XML_H + +/// @addtogroup FileIO Input/Output +/// @{ + +#include +//#include +#include +#include +#include + +#include "psMetadata.h" +#include "psMetadataConfig.h" +#include "psMemory.h" +#include "psError.h" +#include "psString.h" +#include "psConstants.h" +#include "psTime.h" + +/** XML wrapper pointing to an XML document in memory */ +typedef xmlDocPtr psXMLDoc; + + +/*****************************************************************************/ + +/* FUNCTION PROTOTYPES */ + +/*****************************************************************************/ + +/** Allocates a new psXMLDoc + * + * @return psXMLDoc* a new psXMLDoc object +*/ +psXMLDoc *psXMLDocAlloc(void); + +/** Converts a psMetadata data structure to a complete psXMLDoc (in memory) + * + * @return psXMLDoc* Pointer to XML document from read +*/ +psXMLDoc *psMetadataToXMLDoc( + const psMetadata *md ///< psMetadata structure to read +); + +/** Converts a complete psXMLDoc (in memory) to a psMetadata data structure + * + * @return psMetadata* Pointer to psMetadata data structure from read +*/ +psMetadata *psXMLDocToMetadata( + const psXMLDoc *doc ///< psXMLDoc to read +); + +/** Loads the data in a named file into a complete psXMLDoc (in memory) + * + * @return psXMLDoc* Pointer to resulting XML document from read +*/ +psXMLDoc *psXMLParseFile( + const char *filename ///< Filename of file to be read +); + +/** Writes out a complete psXMLDoc (in memory) to a named file + * + * @return bool: True on success or false otherwise. +*/ +bool psXMLDocToFile( + const psXMLDoc *doc, ///< psXMLDoc to read + const char *filename ///< Filename of file to be written +); + +/** Accepts a block of memory and parses it into a complete psXMLDoc (also in memory) + * + * @return psXMLDoc* Pointer to resulting XML document from read +*/ +psXMLDoc *psXMLParseMem( + const char *buffer, ///< Buffer to read + int size ///< Size of buffer +); + +/** Accepts a complete psXMLDoc (in memory) and parses it into a block of memory + * + * @return bool: True on success or false otherwise. +*/ +bool psXMLDocToMem( + const psXMLDoc *doc, ///< psXMLDoc to read + char *buffer ///< Buffer to write +); + +/** Reads from a file descriptor and converts the incoming data to a complete + * psXMLDoc (in memory) + * + * @return psXMLDoc* Pointer to resulting XML document from read +*/ +psXMLDoc *psXMLParseFD( + int fd ///< File descriptor to read +); + +/** Reads from a complete psXMLDoc (in memory) and writes it to a file descriptor + * + * @return bool: True on success or false otherwise. +*/ +bool psXMLDocToFD( + const psXMLDoc *doc, ///< psXMLDoc to read + int fd ///< File descriptor to write +); + +/// @} +#endif // #ifndef PS_XML_H Index: /branches/rel-1-1/psLib/src/xml/xml.i =================================================================== --- /branches/rel-1-1/psLib/src/xml/xml.i (revision 12167) +++ /branches/rel-1-1/psLib/src/xml/xml.i (revision 12167) @@ -0,0 +1,2 @@ +/* xml headers */ +%include "psXML.h" Index: /branches/rel-1-1/psLib/swig/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/swig/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/swig/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +psLibModule +Makefile +Makefile.in +*.bb +*.bbg +*.da Index: /branches/rel-1-1/psLib/swig/Makefile.PL =================================================================== --- /branches/rel-1-1/psLib/swig/Makefile.PL (revision 12167) +++ /branches/rel-1-1/psLib/swig/Makefile.PL (revision 12167) @@ -0,0 +1,35 @@ +# File : Makefile.PL +use ExtUtils::MakeMaker; +use FileHandle; + +sub ReadSetup { + my $filename = shift; + #return val + my %opts; + + my $fh = FileHandle->new($filename, 'r'); + while(<$fh>) { + /([a-z]+)=(.+)/ && do { + $opts{$1} = $2; + next; + }; + + #default: + die "Error: syntaxt error in setup.txt line $_"; + } + return %opts; +} + +############### Main ############## + +my %opts = ReadSetup("setup.txt"); + + +WriteMakefile( + 'NAME' => 'pslib', # Name of package + 'INC' => $opts{includes}, + 'LIBS' => ["$opts{ldflags}"], # Name of custom libraries + 'OBJECT' => 'pslib_wrap.o', # Name of object + 'OPTIMIZE' => "$opts{cflags} -w", # cflags with disabling of warnings (SWIG generated code generates warnings) + 'LD' => $opts{ld} +); Index: /branches/rel-1-1/psLib/swig/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/swig/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/swig/Makefile.am (revision 12167) @@ -0,0 +1,47 @@ + +EXTRA_DIST = pslib.i Makefile.PL example/phase2.pl example/data/* + +clean-generic: + rm -rf psLibModule + +# this is going into a make file one directory deeper in the tree so the +# realitive paths need to be adjusted +SWIGINC=`echo "${SRCINC}" | ${PERL} -pe "s|-I|-I../|g"` + +#################################################### +## PsLibModule swig build section. + +CLEANFILES = psLibModule + +psLibModule: + if [ ! -d psLibModule ]; then mkdir psLibModule; fi + + +psLibModule/Makefile.PL: psLibModule + cp -f $(srcdir)/Makefile.PL psLibModule/Makefile.PL + +psLibModule/setup.txt: psLibModule + echo "includes=-I../$(top_srcdir)/src $(SWIGINC) $(PSLIB_CFLAGS)" > psLibModule/setup.txt + echo "ldflags=-L$(top_builddir)/src $(PSLIB_LIBS)" >> psLibModule/setup.txt + echo "cflags=$(CFLAGS) -std=c99 -Wno-unused -Wno-strict-aliasing" >> psLibModule/setup.txt + +psLibModule/pslib_wrap.c: psLibModule $(srcdir)/pslib.i + $(SWIG) -perl $(SRCINC) -w451 -o $@ $(srcdir)/pslib.i + +psLibModule/Makefile: psLibModule psLibModule/Makefile.PL psLibModule/setup.txt + cd psLibModule && $(PERL) Makefile.PL PREFIX=$(PERL_PREFIX) + +all: swig + +swig: psLibModule/pslib_wrap.c psLibModule/setup.txt psLibModule/Makefile + cd psLibModule && make + +swig-check: swig + export PERLLIB=psLibModule:psLibModule/blib/arch/auto/pslib && perl -Mpslib -e 'print "pslib version = " . pslib::psLibVersion() . "\n";' + +swig-install: swig + cd psLibModule && make install + +install-exec-hook: swig-install + + Index: /branches/rel-1-1/psLib/swig/example/data/badpix.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/badpix.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/badpix.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/base.config =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/base.config (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/base.config (revision 12167) @@ -0,0 +1,3 @@ +# +SITE STR data/site.config + Index: /branches/rel-1-1/psLib/swig/example/data/bias.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/bias.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/bias.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/camera-0.config =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/camera-0.config (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/camera-0.config (revision 12167) @@ -0,0 +1,17 @@ +# +# Fakes for phase2 +# +RECIPE.PHASE2 STR data/recipe.config +NCHIPS S32 2 + +NCELLS S32 3 +CELL_NROW S32 20 +CELL_NCOL S32 20 + +NREADOUTS.0.0 S32 1 +NREADOUTS.0.1 S32 1 +NREADOUTS.0.2 S32 1 + +NREADOUTS.1.0 S32 1 +NREADOUTS.1.1 S32 1 +NREADOUTS.1.2 S32 1 Index: /branches/rel-1-1/psLib/swig/example/data/dark.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/dark.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/dark.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/data.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/data.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/data.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/flat.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/flat.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/flat.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/fringe.fits =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/fringe.fits (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/fringe.fits (revision 12167) @@ -0,0 +1,50 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 2 / number of data axes NAXIS1 = 10 / length of data axis 1 NAXIS2 = 10 / length of data axis 2 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END p + +import os, re, sys +from math import * +import pdb +import rhl + +if 0: + try: + import psLib + import ps + except: pass + +try: + from actUtils import * +except: + print "Failed to import actUtils" + +try: + from actSim import * +except: + print "Failed to import actSim" + +try: import objects +except: pass + +def tb(): + pdb.pm() + +def grep(pattern, list): + print filter(lambda x: re.search(pattern, x), list) + +try: + import psLib + mortal = rhl.memCheckLeaks; id0=psLib.psMemGetId() +except: + pass + +try: + from ds9 import mtv, dot, erase, line, zoom +except: + print "Failed to load ds9" + pass + +############################################################################### + +class foo: + def __init__(self, a = 1, b = 2): + self.__dict__['a'] = a + Index: /branches/rel-1-1/psLib/swig/example/data/recipe.config =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/recipe.config (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/recipe.config (revision 12167) @@ -0,0 +1,35 @@ +# +# Default filenames +# +BADPIX.IMAGE STR FILE:data/badpix.fits +BIAS.IMAGE STR FILE:data/bias.fits +DARK.IMAGE STR FILE:data/dark.fits +FLAT.IMAGE STR FILE:data/flat.fits +FRINGE.IMAGE STR FILE:data/fringe.fits +# +BIAS.OVERSCAN STR HEADER:BIASSEC + +BIAS.OVERSCAN.STATS STR XXX + +# BIAS.OVERSCAN.FIT: NONE POLYNOMIAL SPLINE +BIAS.OVERSCAN.FIT STR NONE + +BIAS.OVERSCAN.FIT.NBIN S32 10 +BIAS.OVERSCAN.FIT.NPTS S32 10 +BIAS.OVERSCAN.FIT.ORDER S32 1 + +# The dark scaling +DARK.FACTOR STR VALUE:1 + +# Linearity corrections +#NONLINEAR.METHOD: LOOKUP NONE POLYNOMIAL +NONLINEAR.METHOD STR NONE +NONLINEAR.ORDER S32 3 # Why do we need this? It's implicit in .COEFFS +@NONLINEAR.COEFFS F64 1 2 3 +NONLINEAR.IN_FLUX STR foo.in.fits +NONLINEAR.OUT_FLUX STR foo.out.fits + +# +# How to trim the file +# +TRIM.DATASEC STR HEADER:DATASEC Index: /branches/rel-1-1/psLib/swig/example/data/site.config =================================================================== --- /branches/rel-1-1/psLib/swig/example/data/site.config (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/data/site.config (revision 12167) @@ -0,0 +1,1 @@ +CAMERA.0 STR data/camera-0.config # Camera filename Index: /branches/rel-1-1/psLib/swig/example/phase2.pl =================================================================== --- /branches/rel-1-1/psLib/swig/example/phase2.pl (revision 12167) +++ /branches/rel-1-1/psLib/swig/example/phase2.pl (revision 12167) @@ -0,0 +1,484 @@ +#!/usr/bin/perl -w +package phase2; + +use strict; +use pslib; +# +# Prototypes +# +sub DefineStats($); +sub DirectionFromOverscan($); +sub bias_subtract_readout($$$; @); +sub dark_subtract_readout($$$); +sub defringe_readout($$$$); +sub getScalingFactor($$$); +sub load_image($$$$); +sub make_kernel(); +sub make_mask($$); +sub mask_readout($$$$$); +sub nonlinearity_correct_readout($$$$); +sub phase2($$; @); +sub pmCameraFromHeader($); +sub pmCameraValidateHeaders($$); +sub pmFPAfromHeader($$); +sub pmFlatField($$$); +sub pmRecipeDefineSection($$$); +sub pmSectiontoRectangle($); +sub pmSubtractBias($$$$$$$$); +sub psFITSReadHeaderSet($); +sub trim_readout($$$); + +############################################################################### +# +# Do the real work +# +sub phase2($$; @) +{ + my($input, $outroot, $cameraname, $recipefile, $basefile, $verbose) = @_; + $basefile ||= "base.config"; $verbose ||= 0; + my($nFail) = 0; + $outroot++; + + pslib::psTraceSetLevel("ps.phase2", $verbose); + + my($site); + if ($basefile) { + pslib::psTrace("ps.phase2", 2, "Basefile: $basefile\n"); + + my($base) = pslib::psMetadataAlloc(); + pslib::psMetadataParseConfig($base, $basefile, 1); + + my($sitefile) = pslib::psMetadataLookup($base, "SITE")->get_STR(); + + $site = pslib::psMetadataAlloc(); + pslib::psMetadataParseConfig($site, $sitefile, 1); + } else { + $site = undef; + } + + # load only the headers from the given file input a list of headers + my($headers) = psFITSReadHeaderSet($input); + + # identify camera (may be specified on command line) + my($camera); + if (!$cameraname) { + $cameraname = pmCameraFromHeader(pslib::psHashLookup($headers, "PHU")); + my($camerafile) = pslib::psMetadataLookup($site, ("CAMERA.$cameraname"))->get_STR(); + + # load the camera details for the specific camera + $camera = pslib::psMetadataAlloc(); + pslib::psMetadataParseConfig($camera, $camerafile, 0); + } + + # recipefile is defined in the camera metadata, if not specified on command line + if (!$recipefile) { + if (1) { # + $recipefile = pslib::psMetadataLookup($camera, "RECIPE.PHASE2")->get_STR(); + } else { # an alternative make this a database lookup & a function of date + $recipefile = DetrendDatabaseLookup ("recipe", $camera, $headers); + } + } + + pslib::psTrace("ps.phase2", 2, "Reading recipe from $recipefile\n"); + my($recipe) = pslib::psMetadataAlloc(); + pslib::psMetadataParseConfig($recipe, $recipefile, 0); + + # END CONFIG loading code + + # check the validity of the given set of headers based on expectactions for this camera + pslib::psTrace("ps.phase2", 3, "Validating headers\n"); + pmCameraValidateHeaders($headers, $camera); + + # construct a complete, empty (ie, no pixel data) FPA structure for this camera / header set + # we need to construct the output container. is it big enough to fit in memory? assume so? + my($FPA) = pmFPAfromHeader($headers, $camera); + + # I\'m pretending the extname value for each cell in part of psCell + # Do we need to construct a list of the extname values associated with each readout? + # Is EXTNAME invarient? (probably not; does not always exist) + # + # XXX Faked psCell->{extname} to exist and be NULL in pslib.i XXX + + my($i, $j, $k); + for ($i = 0; $i < $FPA->{chips}->{n}; $i++) { + my($chip) = $FPA->{chips}->get_chip($i); + + pslib::psTrace("ps.phase2", 3, "Processing chip $i\n"); + for ($j = 0; $j < $chip->{cells}->{n}; $j++) { + my($cell) = $chip->{cells}->get_cell($j); + + pslib::psTrace("ps.phase2", 4, "Processing cell $j\n"); + my($bias) = load_image("BIAS", $recipe, $cell->{metadata}, $cell->{extname}); + my($dark) = load_image("DARK", $recipe, $cell->{metadata}, $cell->{extname}); + my($flat) = load_image("FLAT", $recipe, $cell->{metadata}, $cell->{extname}); + my($badpix) = load_image("BADPIX", $recipe, $cell->{metadata}, $cell->{extname}); + my($fringe) = load_image("FRINGE", $recipe, $cell->{metadata}, $cell->{extname}); + pslib::psTrace("ps.phase2", 5, "Read images for cell $j\n"); + + for ($k = 0; $k < $cell->{readouts}->{n}; $k++) { + pslib::psTrace("ps.phase2", 6, "Reading readout $k\n"); + + my($readout) = $cell->{readouts}->get_readout($k); + $readout->{image} = pslib::psImageReadSection(undef, 0, 0, 0, 0, 0, $cell->{extname}, $k, $input); + + if (!defined($readout->{metadata})) { + pslib::psTrace("ps.phase2", 7, "Creating metadata\n"); + $readout->{metadata} = pslib::psMetadataAlloc(); + + my($nbias) = 2; + pslib::psMetadataAddStr($readout->{metadata}, $pslib::PS_LIST_TAIL, + "BIASSEC", "Define bias section", + sprintf("[0:%d,0:%d]", + ($readout->{image}->{numRows} - 1, $nbias - 1))); + pslib::psMetadataAddStr($readout->{metadata}, $pslib::PS_LIST_TAIL, + "DATASEC", "Define datasection section", + sprintf("[0:%d,%d:%d]", + ($readout->{image}->{numRows} - 1, $nbias, + $readout->{image}->{numCols} - 1))); + } + + my($kernel) = make_kernel(); + my($mask) = make_mask($readout->{image}->{numRows}, $readout->{image}->{numCols}); + + pslib::psTrace("ps.phase2", 7, "Bias subtraction\n"); + bias_subtract_readout($readout, $bias, $recipe); + + pslib::psTrace("ps.phase2", 7, "Dark subtraction\n"); + dark_subtract_readout($readout, $dark, $recipe); + nonlinearity_correct_readout($readout, $mask, $recipe, $camera); + # + pslib::psTrace("ps.phase2", 7, "Trimming\n"); + trim_readout($readout, $mask, $recipe); + mask_readout($readout, $mask, $badpix, $kernel, $recipe); + # + # where do we convolve the flat with the kernel? + # + pmFlatField($readout, $mask, $flat); + # + pslib::psTrace("ps.phase2", 7, "Defringing\n"); + defringe_readout($readout, $mask, $fringe, $recipe); + + } + } + } +} + +sub bias_subtract_readout($$$; @) +{ + #"bias subtract the given readout according to the recipe (bias image may be None) + #no mask needed yet" + + my($readout, $bias, $recipe, $mask) = (undef, undef, undef, undef); + ($readout, $bias, $recipe, $mask) = @_; + #determine overscan option + my($biassec) = pmRecipeDefineSection($recipe, $readout->{metadata}, "BIAS.OVERSCAN"); + my($overscan) = pslib::psImageSubsection($readout->{image}, $biassec); + + # the type of statistic is defined by the recipe: BIAS.OVERSCAN.STATS + my($statname) = pslib::psMetadataLookup ($recipe, "BIAS.OVERSCAN.STATS")->get_STR(); + my($stats) = DefineStats($statname); + + # identify the type of fit requested and relevant parameters + # the type of fit is defined by the recipe: BIAS.OVERSCAN.STATS + my($fitname) = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT")->get_STR(); # string defining overscan stats + + my($fitType, $fitSpec, $nBin, $nPts, $order); + if ($fitname eq "NONE") { + $fitType = "PM_FIT_NONE"; + $fitSpec = undef; + $nBin = 0; + } elsif ($fitname eq "SPLINE") { + my($Npix) = "XXX"; + + $fitType = "PM_FIT_SPLINE"; + $nBin = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.NBIN"); + $nPts = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.NPTS"); + $order = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.ORDER"); + $fitSpec = psSpline1DAlloc($nPts, 3, 0, $Npix); # Npix is either NAXIS1 or NAXIS2 (Nx or Ny) + } elsif ($fitname eq "POLYNOMIAL") { + $fitType = "PM_FIT_POLYNOMIAL"; + $nBin = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.NBIN"); + $nPts = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.NPTS"); + $order = pslib::psMetadataLookup($recipe, "BIAS.OVERSCAN.FIT.ORDER"); + $fitSpec = psPolynomial1DAlloc($nPts, "PS_POLYNOMIAL_CHEB"); + } else { + #raise pslib::PsUtilsError ("unknown fitname: %s" % fitname) + } + + my($overscanlist) = pslib::psListAlloc($overscan); + $readout->{image} = pmSubtractBias($readout->{image}, $fitSpec, $overscanlist, + DirectionFromOverscan($biassec), $stats, $nBin, $fitType, $bias); + + # add these to the readout->{metadata}? + # or to the chip / cell metadata? +} + +sub dark_subtract_readout($$$) +{ + #"subtract dark image using the appropriate scaling factor for this exposure time + #no mask needed yet" + + my($readout, $dark, $recipe) = @_; + + if (!defined($dark)) { + return; + } + + # need to get a lookup table from the database, apply exptime for readout and dark + my($factor) = getScalingFactor($recipe, $readout, $dark); + + # $out = in - dark * factor + my($tmp) = pslib::psImageCopy(undef, $dark, $dark->{type}->{type}); + pslib::psBinaryOp($tmp, $dark, "*", $factor); + pslib::psBinaryOp($readout->{image}, $readout->{image}, "-", $tmp); +} + +sub nonlinearity_correct_readout($$$$) +{ + #"this corrects the non-linear response, but probably should use data determined at the cell level + #we need to set a mask value for pixels which have were out of range (TBD)" + + my($readout, $mask, $recipe, $camera) = @_; + + my($method) = pslib::psMetadataLookup($recipe, "NONLINEAR.METHOD")->get_STR(); + + # use a polynomial; get coeffs from recipe + if ($method eq "NONE") { + ; + } elsif ($method eq "POLYNOMIAL") { + my($correction); + $correction->{n} = pslib::psMetadataLookup($recipe, "NONLINEAR.ORDER")->{data}->{S32}; + $correction->{coeffs} = pslib::psMetadataLookup($recipe, "NONLINEAR.COEFFS"); + pslib::pmNonLinearityPolynomial($readout, $correction); + } elsif ($method eq "LOOKUP") { + my($time) = "XXX"; + my($lookup_table) = DetrendDatabaseLookup($time, $camera, "etc?"); + my($inFlux) = pslib::psFITSTableRead($lookup_table, "NONLINEAR.IN_FLUX"); + my($outFlux) = pslib::psFITSTableRead($lookup_table, "NONLINEAR.OUT_FLUX"); + pslib::pmNonLinearityLookup($readout, $inFlux, $outFlux); + } else { + #raise pslib::PsUtilsError ("unknown method: %s" % method); + } +} + +sub trim_readout($$$) +{ + #"trim the image and mask based on the requested region" + my($readout, $mask, $recipe) = @_; + my($datasec) = pmRecipeDefineSection($recipe, $readout->{metadata}, "TRIM.DATASEC"); + + my($r0, $r1, $c0, $c1) = ($datasec =~ /\[([0-9]+):([0-9]+),([0-9]+):([0-9]+)\]/); + + pslib::psImageTrim($readout->{image}, $c0, $r0, $c1, $r1); + $mask = pslib::psImageTrim($mask, $c0, $r0, $c1, $r1); +} + +# apply the bad pixel mask to the image mask +sub mask_readout($$$$$) +{ + my($readout, $mask, $badpix, $kernel, $recipe) = @_; +} + +sub load_image($$$$) +{ + #"load in the complete corresponding image of proper type (this should be done once per cell) + #we are implying that the bias image is guaranteed to have the corresponding EXTNAME" + + my($type, $recipe, $header, $extname) = @_; + my($source) = pslib::psMetadataLookup($recipe, $type . ".IMAGE")->get_STR(); + + my($name); + if (uc(substr($source, 0, 5)) eq "FILE:") { + $name = substr($source, 5); + } elsif (uc($source) eq "DB:BEST") { + $name = DetrendDatabaseLookup("best", $header); # these APIs need to be seriously fleshed out!! + } elsif (uc($source) eq "DB:CLOSE") { + $name = DetrendDatabaseLookup("close", $header); # these APIs need to be seriously fleshed out!! + } else { + #raise PsUtilsError ("Unknown source for $type: $source"); + } + + my($image); + if (defined($name)) { + $image = pslib::psImageReadSection (undef, 0, 0, 0, 0, 0, $extname, 0, $name); + } else { + $image = undef; + } + + return $image; +} + +sub pmRecipeDefineSection($$$) +{ + my($recipe, $header, $name) = @_; + + my($source) = pslib::psMetadataLookup($recipe, $name)->get_STR(); + + pslib::psTrace("ps.phase2.recipe", 10, "pmRecipeDefineSection (recipe, header, $name)\n"); + + if (uc($source) eq "NONE") { + return psRectangleAlloc(0, 0, 0, 0); # the None section + } elsif (uc(substr($source, 0, 7)) eq "HEADER:") { + my($keyword) = substr($source,7); + my($section) = pslib::psMetadataLookup($header, $keyword)->get_STR(); + return pmSectiontoRectangle($section); + } elsif (uc(substr($source, 0, 7)) eq "RECIPE:") { + my($section) = substr($source, 7); + return pmSectiontoRectangle($section); + } + + #raise pslib::PsUtilsError ("invalid section: $section"); +} + +#-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- + +sub DirectionFromOverscan($) +{ + #"The direction is implied by noting the long dimension of the biassec" + my($secstr) = @_; + + return 1; +} + +sub pmSectiontoRectangle($) +{ + #"Parse a specification of the form [col0:col1,row0:row1] + #For now, simply return it" + my($secstr) = @_; + + return $secstr; +} + +sub psFITSReadHeaderSet($) +{ + my($input) = @_; + + pslib::psTrace("ps.phase2", 2, "Reading headers: $input\n"); + + my($meta) = pslib::psMetadataAlloc(); + pslib::psMetadataAddStr($meta, $pslib::PS_LIST_TAIL, "CAMERA", "Camera ID", "0"); + + my($headers) = pslib::psHashAlloc(64); + pslib::psHashAdd($headers, "PHU", $meta); + + return $headers; +} + +sub pmCameraFromHeader($) +{ + #"Return a camera given the metadata read from a fits header" + my($meta) = @_; + + return "0"; +} + +sub pmCameraValidateHeaders($$) +{ + my($headers, $camera) = @_; + + if (0) { + #raise pslib::PsUtilsError ("Failed to validate $headers:$camera"); + } +} + +sub pmFPAfromHeader($$) +{ + my($headers, $camera) = @_; + + my($ra) = 1; my($dec) = 2; my($hourAngle) = 3; my($zenith) = 4; my($azimuth) = 5; + my($rotAngle) = 8; + my($temperature) = 9; my($pressure) = 10; my($humidity) = 11; + my($exposureTime) = 12; + + my($nchips) = pslib::psMetadataLookup($camera, "NCHIPS")->{data}->{S32}; + my($ncells) = pslib::psMetadataLookup($camera, "NCELLS")->{data}->{S32}; + + my($obs) = pslib::psObservatoryAlloc("Haleakala", 21, 150, 3000, 0.1); + my($wavelength) = 5500e-10; + my($localTime) = pslib::psTimeGetTime($pslib::PS_TIME_TAI); + + my($exposure) = pslib::psExposureAlloc($ra, $dec, $hourAngle, $zenith, $azimuth, $localTime, + $rotAngle, $temperature, $pressure, $humidity, $exposureTime, + $wavelength, $obs); + my($FPA) = pslib::psFPAAlloc($nchips, $exposure); + my($chips) = pslibc::psFPA_chips_get($FPA); + + my($i, $j, $k); + for ($i = 0; $i <$nchips; $i++) { + my($chip) = pslib::psChipAlloc($ncells, $FPA); + pslib::psArraySet($chips, $i, $chip); + my($cells) = pslibc::psChip_cells_get($chip); + for ($j = 0; $j <$ncells; $j++) { + my($nReadouts) = pslib::psMetadataLookup($camera, "NREADOUTS.$i.$j")->{data}->{S32}; + + my($cell) = pslib::psCellAlloc($nReadouts, $chip); + + pslib::psArraySet($cells, $j, $cell); + + my($readouts) = pslibc::psCell_readouts_get($cell); + for ($k = 0; $k < $nReadouts; $k++) { + pslib::psArraySet($readouts, $k, pslib::psReadoutAlloc()); + } + } + } + + return $FPA; +} + +sub make_kernel() +{ + my($nrow) = 5; my($ncol) = 5; + return pslib::psImageAlloc($ncol, $nrow, $pslib::PS_TYPE_F64); +} + +sub make_mask($$) +{ + my($nrow, $ncol) = @_; + + return pslib::psImageAlloc($ncol, $nrow, $pslib::PS_TYPE_F64); +} + +sub DefineStats($) +{ + my($str) = @_; + return $str; +} + +sub pmSubtractBias($$$$$$$$) +{ + #"Subtract the bias. Don't do a very good job..." + my($rawImage, $fitSpec, $overscanlist, $direction, $stats, $nBin, $type, $bias) = @_; + return pslib::psImageAlloc($rawImage->{numCols}, $rawImage->{numRows}, $pslib::PS_TYPE_F64); +} + +sub getScalingFactor($$$) +{ + my($recipe, $readout, $dark) = @_; + my($source) = pslib::psMetadataLookup($recipe, "DARK.FACTOR")->get_STR(); + + if (uc(substr($source, 0, length("VALUE:"))) eq "VALUE:") { + return pslib::psScalarF32Alloc(substr($source, length("VALUE:")), $pslib::PS_TYPE_F64); + } + + #raise pslib::PsUtilsError ("Unknown recipe for dark factor: $source"); +} + +sub pmFlatField($$$) +{ + my($readout, $mask, $flat) = @_; +} + +sub defringe_readout($$$$) +{ + my($readout, $mask, $fringe, $recipe) = @_; +} + +#(input, outroot, cameraname = None, recipefile = None, basefile = "base.config", verbose=0) +if (1) { + phase2('data/data.fits', undef, undef, undef, "data/base.config", 4); + + if (pslib::psMemCheckLeaksToStderr(0,undef,0)) { + die "You leaked memory\n"; + } +} + Index: /branches/rel-1-1/psLib/swig/pslib.i =================================================================== --- /branches/rel-1-1/psLib/swig/pslib.i (revision 12167) +++ /branches/rel-1-1/psLib/swig/pslib.i (revision 12167) @@ -0,0 +1,69 @@ +%module pslib + +%{ +#define PS_ALLOW_MALLOC +#define SWIG +#include "pslib.h" + +/* SWIG uses malloc/free - make it use the pslib memory functions instead. */ +/* +#define malloc(S) psAlloc(S) +#define realloc(P,S) psRealloc(P,S) +#define free(P) psFree(P) +*/ + +%} + +/* XXX: this is temporary -- not portable, but should work with any current OS supported */ +typedef unsigned char uint8_t; +typedef unsigned short uint16_t; +typedef unsigned int uint32_t; +typedef unsigned long uint64_t; +typedef char int8_t; +typedef short int16_t; +typedef int int32_t; +typedef long long int64_t; + +/* grab the typedefs used throughout psLib, e.g. psU8, psU16,... */ +%include "cpointer.i" +%include "typemaps.i" + +/** + * Typemap to map FILE* input to the script's native file descriptor wrapper. + * Used for such functions as psErrorStackPrint and psTraceSetDestination. + */ +%typemap(in) FILE * { +#if defined(SWIGPERL) + if (!SvOK($input)) { + $1 = NULL; + } else { + $1 = PerlIO_findFILE(IoIFP(sv_2io($input))); + } +#elif defined(SWIGPYTHON) + if ($input == Py_None) { + $1 = NULL; + } else if (!PyFile_Check($input)) { + PyErr_SetString(PyExc_TypeError, "Need a file!"); + goto fail; + } else { + $1 = PyFile_AsFile($input); + } +#endif +} + +%{ +typedef struct { float re, im; } swig_psC32; ///< 32-bit complex floating point +typedef struct { double re, im; } swig_psC64; ///< 64-bit complex floating point +%} + +/* the actual including of headers are found in each of the directories. */ +%include "astro.i" +%include "db.i" +%include "fft.i" +%include "fits.i" +%include "imageops.i" +%include "math.i" +%include "mathtypes.i" +%include "sys.i" +%include "types.i" +%include "xml.i" Index: /branches/rel-1-1/psLib/test-coverage =================================================================== --- /branches/rel-1-1/psLib/test-coverage (revision 12167) +++ /branches/rel-1-1/psLib/test-coverage (revision 12167) @@ -0,0 +1,93 @@ +set PWD='pwd' +./autogen.sh CFLAGS="-lgcov -fprofile-arcs -ftest-coverage" --prefix=$PWD +make clean +make +mkdir Test_Coverage +cd test +./FullUnitTest +cd ../src/astro +gcov -f --object-file ./.libs/libpslibastro_la-psCoord.o psCoord.c > coverage-astro.coord +gcov -f --object-file ./.libs/libpslibastro_la-psEarthOrientation.o psEarthOrientation.c > coverage-astro.eoc +gcov -f --object-file ./.libs/libpslibastro_la-psSphereOps.o psSphereOps.c > coverage-astro.sphereOps +gcov -f --object-file ./.libs/libpslibastro_la-psTime.o psTime.c > coverage-astro.time +mv coverage-*.* ../../Test_Coverage/ +cd ../db +gcov -f --object-file ./.libs/libpslibdb_la-psDB.o psDB.c > coverage-db.db +mv coverage-*.* ../../Test_Coverage/ +cd ../fft +gcov -f --object-file ./.libs/libpslibfft_la-psImageFFT.o psImageFFT.c > coverage-fft.imageFFT +gcov -f --object-file ./.libs/libpslibfft_la-psVectorFFT.o psVectorFFT.c > coverage-fft.vectorFFT +mv coverage-*.* ../../Test_Coverage/ +cd ../fits +gcov -f --object-file ./.libs/libpslibfits_la-psFits.o psFits.c > coverage-fits.fits +gcov -f --object-file ./.libs/libpslibfits_la-psFitsHeader.o psFitsHeader.c > coverage-fits.fitsHeader +gcov -f --object-file ./.libs/libpslibfits_la-psFitsImage.o psFitsImage.c > coverage-fits.fitsImage +gcov -f --object-file ./.libs/libpslibfits_la-psFitsTable.o psFitsTable.c > coverage-fits.fitsTable +mv coverage-*.* ../../Test_Coverage/ +cd ../imageops +gcov -f --object-file ./.libs/libpslibimageops_la-psImageBackground.o psImageBackground.c > coverage-imageops.imageBackground +gcov -f --object-file ./.libs/libpslibimageops_la-psImageConvolve.o psImageConvolve.c > coverage-imageops.imageConvolve +gcov -f --object-file ./.libs/libpslibimageops_la-psImageGeomManip.o psImageGeomManip.c > coverage-imageops.imageGeomManip +gcov -f --object-file ./.libs/libpslibimageops_la-psImageMaskOps.o psImageMaskOps.c > coverage-imageops.imageMaskOps +gcov -f --object-file ./.libs/libpslibimageops_la-psImagePixelExtract.o psImagePixelExtract.c > coverage-imageops.imagePixelExtract +gcov -f --object-file ./.libs/libpslibimageops_la-psImagePixelManip.o psImagePixelManip.c > coverage-imageops.imagePixelManip +gcov -f --object-file ./.libs/libpslibimageops_la-psImageStats.o psImageStats.c > coverage-imageops.imageStats +gcov -f --object-file ./.libs/libpslibimageops_la-psImageStructManip.o psImageStructManip.c > coverage-imageops.imageStructManip +gcov -f --object-file ./.libs/libpslibimageops_la-psImageUnbin.o psImageUnbin.c > coverage-imageops.imageUnbin +mv coverage-*.* ../../Test_Coverage/ +cd ../jpeg +gcov -f --object-file ./.libs/libpslibjpeg_la-psImageJpeg.o psImageJpeg.c > coverage-jpeg.imageJpeg +mv coverage-*.* ../../Test_Coverage/ +cd ../math +gcov -f --object-file ./.libs/libpslibmath_la-psBinaryOp.o psBinaryOp.c > coverage-math.binaryOp +gcov -f --object-file ./.libs/libpslibmath_la-psCompare.o psCompare.c > coverage-math.compare +gcov -f --object-file ./.libs/libpslibmath_la-psEllipse.o psEllipse.c > coverage-math.ellipse +gcov -f --object-file ./.libs/libpslibmath_la-psMathUtils.o psMathUtils.c > coverage-math.mathUtils +gcov -f --object-file ./.libs/libpslibmath_la-psMatrix.o psMatrix.c > coverage-math.matrix +gcov -f --object-file ./.libs/libpslibmath_la-psMinimizeLMM.o psMinimizeLMM.c > coverage-math.minimizeLMM +gcov -f --object-file ./.libs/libpslibmath_la-psMinimizePolyFit.o psMinimizePolyFit.c > coverage-math.minimizePolyFit +gcov -f --object-file ./.libs/libpslibmath_la-psMinimizePowell.o psMinimizePowell.c > coverage-math.minimizePowell +gcov -f --object-file ./.libs/libpslibmath_la-psPolynomial.o psPolynomial.c > coverage-math.polynomial +gcov -f --object-file ./.libs/libpslibmath_la-psPolynomialUtils.o psPolynomialUtils.c > coverage-math.polynomialUtils +gcov -f --object-file ./.libs/libpslibmath_la-psRandom.o psRandom.c > coverage-math.random +gcov -f --object-file ./.libs/libpslibmath_la-psRegion.o psRegion.c > coverage-math.region +gcov -f --object-file ./.libs/libpslibmath_la-psRegionForImage.o psRegionForImage.c > coverage-math.regionForImage +gcov -f --object-file ./.libs/libpslibmath_la-psSparse.o psSparse.c > coverage-math.sparse +gcov -f --object-file ./.libs/libpslibmath_la-psSpline.o psSpline.c > coverage-math.spline +gcov -f --object-file ./.libs/libpslibmath_la-psStats.o psStats.c > coverage-math.stats +gcov -f --object-file ./.libs/libpslibmath_la-psUnaryOp.o psUnaryOp.c > coverage-math.unaryOp +gcov -f --object-file ./.libs/libpslibmath_la-psVectorSmooth.o psVectorSmooth.c > coverage-math.vectorSmooth +mv coverage-*.* ../../Test_Coverage/ +cd ../mathtypes +gcov -f --object-file ./.libs/libpslibmathtypes_la-psImage.o psImage.c > coverage-mathtypes.image +gcov -f --object-file ./.libs/libpslibmathtypes_la-psScalar.o psScalar.c > coverage-mathtypes.scalar +gcov -f --object-file ./.libs/libpslibmathtypes_la-psVector.o psVector.c > coverage-mathtypes.vector +mv coverage-*.* ../../Test_Coverage/ +cd ../sys +gcov -f --object-file ./.libs/libpslibsys_la-psAbort.o psAbort.c > coverage-sys.abort +gcov -f --object-file ./.libs/libpslibsys_la-psConfigure.o psConfigure.c > coverage-sys.configure +gcov -f --object-file ./.libs/libpslibsys_la-psError.o psError.c > coverage-sys.error +gcov -f --object-file ./.libs/libpslibsys_la-psErrorCodes.o psErrorCodes.c > coverage-sys.errorCodes +gcov -f --object-file ./.libs/libpslibsys_la-psLine.o psLine.c > coverage-sys.line +gcov -f --object-file ./.libs/libpslibsys_la-psLogMsg.o psLogMsg.c > coverage-sys.logMsg +gcov -f --object-file ./.libs/libpslibsys_la-psMemory.o psMemory.c > coverage-sys.memory +gcov -f --object-file ./.libs/libpslibsys_la-psString.o psString.c > coverage-sys.string +gcov -f --object-file ./.libs/libpslibsys_la-psTrace.o psTrace.c > coverage-sys.trace +mv coverage-*.* ../../Test_Coverage/ +cd ../types +gcov -f --object-file ./.libs/libpslibtypes_la-psArguments.o psArguments.c > coverage-types.arguments +gcov -f --object-file ./.libs/libpslibtypes_la-psArray.o psArray.c > coverage-types.array +gcov -f --object-file ./.libs/libpslibtypes_la-psBitSet.o psBitSet.c > coverage-types.bitSet +gcov -f --object-file ./.libs/libpslibtypes_la-psHash.o psHash.c > coverage-types.hash +gcov -f --object-file ./.libs/libpslibtypes_la-psList.o psList.c > coverage-types.list +gcov -f --object-file ./.libs/libpslibtypes_la-psLookupTable.o psLookupTable.c > coverage-types.lookupTable +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadata.o psMetadata.c > coverage-types.metadata +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataConfig.o psMetadataConfig.c > coverage-types.metadataConfig +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataItemCompare.o psMetadataItemCompare.c > coverage-types.metadataItemCompare +gcov -f --object-file ./.libs/libpslibtypes_la-psMetadataItemParse.o psMetadataItemParse.c > coverage-types.metadataItemParse +gcov -f --object-file ./.libs/libpslibtypes_la-psPixels.o psPixels.c > coverage-types.pixels +mv coverage-*.* ../../Test_Coverage/ +cd ../xml +gcov -f --object-file ./.libs/libpslibxml_la-psXML.o psXML.c > coverage-xml.xml +mv coverage-*.* ../../Test_Coverage/ +cd ../../ Index: /branches/rel-1-1/psLib/test/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/.cvsignore (revision 12167) @@ -0,0 +1,7 @@ +temp +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/Makefile.am (revision 12167) @@ -0,0 +1,12 @@ +SUBDIRS = tap pstap $(SRCDIRS) + +TESTS = test.pl + +EXTRA_DIST = test.pl + +# XXX the *.out and *.config files should not be written into this directory in +# the first place +CLEANFILES = core core.* *~ *.out *.config *.fits *.md tmpImages/* tst_psTrace02_OUT + +test: check + Index: /branches/rel-1-1/psLib/test/astro/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/astro/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/.cvsignore (revision 12167) @@ -0,0 +1,27 @@ +.deps +.libs +Makefile +Makefile.in +pslib.config +temp +test.psTime.config1 +test.psTime.config2 +test.psTime.config3 +test.psTime.config4 +test.ser7.dat +tst_psCoord +tst_psCoord01 +tst_psSphereOps +tst_psTime_01 +tst_psTime_02 +tst_psTime_03 +tst_psTime_04 +tst_psEarthOrientation +tst_psCoord02 +*.bb +*.bbg +*.da +gmon.out +tap_psEarthOrientation_corrections +tap_psEarthOrientation_motion +tap_psSphereOps_all Index: /branches/rel-1-1/psLib/test/astro/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/astro/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/Makefile.am (revision 12167) @@ -0,0 +1,70 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psSphereOps_all \ + tap_psEarthOrientation_motion \ + tap_psEarthOrientation_corrections \ + tap_psCoord \ + tap_psCoord02 \ + tap_psTime_01 \ + tap_psTime_02 \ + tap_psTime_03 \ + tap_psTime_04 + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +EXTRA_DIST = \ + data/psTime.config.template \ + data/test.psTime.config1.template \ + data/test.psTime.config2.template \ + data/test.psTime.config3.template \ + data/test.psTime.config4.template \ + data/test.ser7.dat + +tmp_files = \ + pslib.config \ + test.psTime.config1 \ + test.psTime.config2 \ + test.psTime.config3 \ + test.psTime.config4 \ + test.ser7.dat + +CLEANFILES = $(tmp_files) core core.* *~ *.bb *.bbg *.da gmon.out + +tests: $(check_PROGRAMS) + $(top_srcdir)/test/test.pl + + +pslib.config: $(top_srcdir)/etc/pslib.config.template + $(PERL) -pe 's|DATADIR|$(top_srcdir)/share|' $? > $@ + +test.psTime.config1: $(srcdir)/data/test.psTime.config1.template + cp $? $@ + +test.psTime.config2: $(srcdir)/data/test.psTime.config2.template + $(PERL) -pe 's|PREFIX|$(top_srcdir)|' $? > $@ + +test.psTime.config3: $(srcdir)/data/test.psTime.config3.template + $(PERL) -pe 's|PREFIX|$(top_srcdir)|' $? > $@ + +test.psTime.config4: $(srcdir)/data/test.psTime.config4.template + cp $? $@ + +test.ser7.dat: $(srcdir)/data/test.ser7.dat + cp $? $@ + +test: check Index: /branches/rel-1-1/psLib/test/astro/data/psTime.config.template =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/psTime.config.template (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/psTime.config.template (revision 12167) @@ -0,0 +1,23 @@ +# This configuration file specifies values required for time calculations by psLib. +psLib.time.tables.dir STR PREFIX/share # Directory for time tables +psLib.time.tables.n S32 4 # Number of time tables +psLib.time.tables.files STR ser7.dat eopc01_1900_2004.dat finals_all.dat tai_utc.dat # These are the table file names +@psLib.time.tables.from F64 53258.0, 15020.0, 41684.0 2437300.5 # Valid from these dates +@psLib.time.tables.to F64 53622.0, 53258.0, 53627.0 2451179.5 # Valid to these dates +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD + +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569, 0.0555, -0.0200, 0.0513, 0.1483 +@psLib.time.predict.yp F64 0.3498, -0.0176, -0.0498, 0.1483, -0.0513 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944, -0.00023, 53262.0 + Index: /branches/rel-1-1/psLib/test/astro/data/test.psTime.config1.template =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/test.psTime.config1.template (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/test.psTime.config1.template (revision 12167) @@ -0,0 +1,23 @@ +# This configuration file specifies values required for time calculations by psLib. +psLib.time.tables.dir STR bogus # Directory for time tables +psLib.time.tables.n S32 4 # Number of time tables +psLib.time.tables.files STR ser7.dat eopc01_1900_2004.dat finals_all.dat tai_utc.dat # These are the table file names +@psLib.time.tables.from F64 53258.0, 15020.0, 41684.0 2437300.5 # Valid from these dates +@psLib.time.tables.to F64 53622.0, 53258.0, 53627.0 2451179.5 # Valid to these dates +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD + +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569, 0.0555, -0.0200, 0.0513, 0.1483 +@psLib.time.predict.yp F64 0.3498, -0.0176, -0.0498, 0.1483, -0.0513 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944, -0.00023, 53262.0 + Index: /branches/rel-1-1/psLib/test/astro/data/test.psTime.config2.template =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/test.psTime.config2.template (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/test.psTime.config2.template (revision 12167) @@ -0,0 +1,23 @@ +# This configuration file specifies values required for time calculations by psLib. +psLib.time.tables.dir STR PREFIX/share # Directory for time tables +psLib.time.tables.n S32 4 # Number of time tables +psLib.time.tables.files STR eopc01_1900_2004.dat finals_all.dat tai_utc.dat # These are the table file names +@psLib.time.tables.from F64 53258.0, 15020.0, 41684.0 2437300.5 # Valid from these dates +@psLib.time.tables.to F64 53622.0, 53258.0, 53627.0 2451179.5 # Valid to these dates +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD + +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569, 0.0555, -0.0200, 0.0513, 0.1483 +@psLib.time.predict.yp F64 0.3498, -0.0176, -0.0498, 0.1483, -0.0513 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944, -0.00023, 53262.0 + Index: /branches/rel-1-1/psLib/test/astro/data/test.psTime.config3.template =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/test.psTime.config3.template (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/test.psTime.config3.template (revision 12167) @@ -0,0 +1,23 @@ +# This configuration file specifies values required for time calculations by psLib. +psLib.time.tables.dir STR PREFIX/share # Directory for time tables +psLib.time.tables.n S32 4 # Number of time tables +psLib.time.tables.files STR ser7.dat eopc01_1900_2004.dat finals_all.dat tai_utc.dat # These are the table file names +@psLib.time.tables.from F64 15020.0, 41684.0 2437300.5 # Valid from these dates +@psLib.time.tables.to F64 53622.0, 53258.0, 53627.0 2451179.5 # Valid to these dates +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD + +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569, 0.0555, -0.0200, 0.0513, 0.1483 +@psLib.time.predict.yp F64 0.3498, -0.0176, -0.0498, 0.1483, -0.0513 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944, -0.00023, 53262.0 + Index: /branches/rel-1-1/psLib/test/astro/data/test.psTime.config4.template =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/test.psTime.config4.template (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/test.psTime.config4.template (revision 12167) @@ -0,0 +1,23 @@ +# This configuration file specifies values required for time calculations by psLib. +psLib.time.tables.dir STR . # Directory for time tables +psLib.time.tables.n S32 1 # Number of time tables +psLib.time.tables.files STR test.ser7.dat # This the table file +@psLib.time.tables.from F64 53258.0 # Valid from this date +@psLib.time.tables.to F64 53622.0 # Valid to this date +psLib.time.before.xp F64 0.0 # Value of XP for before the earliest MJD +psLib.time.before.yp F64 0.0 # Value of YP for before the earliest MJD +psLib.time.before.dut F64 0.0 # Value of UT1-UTC for before the earliest MJD + +# Now follows formulae for predicting ahead of the most recent available table entry. +# xp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# yp = [0] + [1]*cos A + [2]*sin A + [3]*cos C + [4]*sin C +# A = 2*pi*(MJD - pslib.time.predict.mjd)/365.25 +# C = 2*pi*(MJD - pslib.time.predict.mjd)/435.0 +# dut = ut1-utc = [0] + [1]*(MJD - [2]) - (UT2-UT1) +# ut2-ut1 = 0.022 sin(2*pi*T) - 0.012 cos(2*pi*T) - 0.006 sin(4*pi*T) + 0.007 cos(4*pi*T) +# T = 2000.0 + (MJD - 51544.03)/365.2422 +@psLib.time.predict.xp F64 0.0569 +@psLib.time.predict.yp F64 0.3498 +psLib.time.predict.mjd F64 53257.0 +@psLib.time.predict.dut F64 -0.4944 + Index: /branches/rel-1-1/psLib/test/astro/data/test.ser7.dat =================================================================== --- /branches/rel-1-1/psLib/test/astro/data/test.ser7.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/data/test.ser7.dat (revision 12167) @@ -0,0 +1,380 @@ +# ser7.dat +# +# This file comes from http://maia.usno.navy.mil (Click on General Information about Earth Orientation). This +# file may also be directly downloaded from ftp://maia.usno.navy.mil/ser7/ser7.dat. See readme.ser7 (located +# in the psLib/data directory) for details. +# +# @author Ross Harman, MHPCC +# +# @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +# @date $Date: 2005-07-13 02:46:58 $ +# +# +# MJD PM-x PM-y UT1-UTC +# (days) (arcsec) (arcsec) (sec) + psF64 psF64 psF64 psF64 + 53yyy244 0.1377 0.5027 -0.45210 + 53245 0.1394 0.5015 -0.45190 + 53246 0.1411 0.5002 -0.45197 + 53247 0.1429 0.4989 -0.45234 + 53248 0.1447 0.4976 -0.45293 + 53249 0.1465 0.4962 -0.45361 + 53250 0.1484 0.4948 -0.45424 + 53251 0.1503 0.4934 -0.45476 + 53252 0.1521 0.4920 -0.45512 + 53253 0.1540 0.4905 -0.45530 + 53254 0.1558 0.4890 -0.45531 + 53255 0.1577 0.4874 -0.45519 + 53256 0.1595 0.4859 -0.45497 + 53257 0.1613 0.4843 -0.45474 + 53258 0.1631 0.4827 -0.45458 + 53259 0.1649 0.4810 -0.45456 + 53260 0.1667 0.4794 -0.45474 + 53261 0.1684 0.4777 -0.45514 + 53262 0.1701 0.4760 -0.45578 + 53263 0.1717 0.4742 -0.45660 + 53264 0.1734 0.4725 -0.45754 + 53265 0.1750 0.4707 -0.45849 + 53266 0.1765 0.4689 -0.45932 + 53267 0.1780 0.4671 -0.45996 + 53268 0.1795 0.4652 -0.46036 + 53269 0.1810 0.4634 -0.46055 + 53270 0.1824 0.4615 -0.46061 + 53271 0.1838 0.4596 -0.46068 + 53272 0.1852 0.4576 -0.46086 + 53273 0.1865 0.4557 -0.46126 + 53274 0.1878 0.4537 -0.46192 + 53275 0.1890 0.4517 -0.46280 + 53276 0.1902 0.4497 -0.46382 + 53277 0.1914 0.4477 -0.46486 + 53278 0.1925 0.4457 -0.46581 + 53279 0.1936 0.4436 -0.46658 + 53280 0.1946 0.4415 -0.46715 + 53281 0.1956 0.4394 -0.46750 + 53282 0.1966 0.4373 -0.46766 + 53283 0.1976 0.4352 -0.46772 + 53284 0.1985 0.4331 -0.46773 + 53285 0.1993 0.4309 -0.46778 + 53286 0.2001 0.4288 -0.46795 + 53287 0.2009 0.4266 -0.46830 + 53288 0.2017 0.4244 -0.46887 + 53289 0.2024 0.4222 -0.46968 + 53290 0.2031 0.4200 -0.47071 + 53291 0.2037 0.4178 -0.47191 + 53292 0.2043 0.4155 -0.47317 + 53293 0.2049 0.4133 -0.47435 + 53294 0.2054 0.4111 -0.47536 + 53295 0.2059 0.4088 -0.47610 + 53296 0.2063 0.4065 -0.47659 + 53297 0.2067 0.4042 -0.47691 + 53298 0.2071 0.4020 -0.47718 + 53299 0.2075 0.3997 -0.47755 + 53300 0.2078 0.3974 -0.47811 + 53301 0.2080 0.3951 -0.47893 + 53302 0.2083 0.3928 -0.47998 + 53303 0.2085 0.3905 -0.48119 + 53304 0.2086 0.3881 -0.48247 + 53305 0.2088 0.3858 -0.48369 + 53306 0.2089 0.3835 -0.48477 + 53307 0.2089 0.3812 -0.48565 + 53308 0.2090 0.3789 -0.48630 + 53309 0.2089 0.3765 -0.48674 + 53310 0.2089 0.3742 -0.48701 + 53311 0.2088 0.3719 -0.48718 + 53312 0.2088 0.3696 -0.48732 + 53313 0.2086 0.3672 -0.48753 + 53314 0.2085 0.3649 -0.48785 + 53315 0.2082 0.3626 -0.48835 + 53316 0.2080 0.3603 -0.48906 + 53317 0.2077 0.3579 -0.48997 + 53318 0.2074 0.3556 -0.49106 + 53319 0.2071 0.3533 -0.49226 + 53320 0.2067 0.3510 -0.49344 + 53321 0.2063 0.3487 -0.49449 + 53322 0.2059 0.3464 -0.49531 + 53323 0.2054 0.3441 -0.49585 + 53324 0.2049 0.3418 -0.49618 + 53325 0.2044 0.3396 -0.49639 + 53326 0.2038 0.3373 -0.49664 + 53327 0.2032 0.3350 -0.49705 + 53328 0.2026 0.3328 -0.49769 + 53329 0.2020 0.3305 -0.49854 + 53330 0.2013 0.3283 -0.49953 + 53331 0.2006 0.3261 -0.50058 + 53332 0.1999 0.3239 -0.50158 + 53333 0.1991 0.3217 -0.50243 + 53334 0.1983 0.3195 -0.50308 + 53335 0.1975 0.3173 -0.50350 + 53336 0.1967 0.3151 -0.50369 + 53337 0.1958 0.3130 -0.50370 + 53338 0.1949 0.3108 -0.50358 + 53339 0.1940 0.3087 -0.50342 + 53340 0.1931 0.3066 -0.50329 + 53341 0.1921 0.3045 -0.50327 + 53342 0.1911 0.3024 -0.50340 + 53343 0.1901 0.3004 -0.50372 + 53344 0.1890 0.2983 -0.50423 + 53345 0.1880 0.2963 -0.50493 + 53346 0.1869 0.2943 -0.50574 + 53347 0.1858 0.2923 -0.50660 + 53348 0.1846 0.2903 -0.50739 + 53349 0.1835 0.2883 -0.50808 + 53350 0.1823 0.2864 -0.50851 + 53351 0.1811 0.2844 -0.50870 + 53352 0.1799 0.2825 -0.50874 + 53353 0.1786 0.2807 -0.50875 + 53354 0.1773 0.2788 -0.50890 + 53355 0.1760 0.2769 -0.50927 + 53356 0.1747 0.2751 -0.50987 + 53357 0.1734 0.2733 -0.51064 + 53358 0.1720 0.2715 -0.51148 + 53359 0.1707 0.2698 -0.51228 + 53360 0.1693 0.2680 -0.51295 + 53361 0.1679 0.2663 -0.51342 + 53362 0.1664 0.2646 -0.51367 + 53363 0.1650 0.2629 -0.51371 + 53364 0.1635 0.2613 -0.51357 + 53365 0.1620 0.2596 -0.51330 + 53366 0.1605 0.2580 -0.51298 + 53367 0.1590 0.2565 -0.51268 + 53368 0.1575 0.2549 -0.51247 + 53369 0.1559 0.2534 -0.51241 + 53370 0.1543 0.2519 -0.51253 + 53371 0.1528 0.2504 -0.51283 + 53372 0.1511 0.2489 -0.51331 + 53373 0.1495 0.2475 -0.51391 + 53374 0.1479 0.2461 -0.51458 + 53375 0.1463 0.2447 -0.51522 + 53376 0.1446 0.2434 -0.51574 + 53377 0.1429 0.2420 -0.51605 + 53378 0.1412 0.2407 -0.51614 + 53379 0.1395 0.2395 -0.51605 + 53380 0.1378 0.2382 -0.51590 + 53381 0.1361 0.2370 -0.51585 + 53382 0.1344 0.2358 -0.51603 + 53383 0.1326 0.2347 -0.51648 + 53384 0.1308 0.2335 -0.51717 + 53385 0.1291 0.2324 -0.51800 + 53386 0.1273 0.2313 -0.51881 + 53387 0.1255 0.2303 -0.51951 + 53388 0.1237 0.2293 -0.52000 + 53389 0.1219 0.2283 -0.52027 + 53390 0.1200 0.2273 -0.52032 + 53391 0.1182 0.2264 -0.52018 + 53392 0.1164 0.2255 -0.51992 + 53393 0.1145 0.2246 -0.51959 + 53394 0.1126 0.2237 -0.51928 + 53395 0.1108 0.2229 -0.51905 + 53396 0.1089 0.2221 -0.51897 + 53397 0.1070 0.2213 -0.51908 + 53398 0.1051 0.2206 -0.51939 + 53399 0.1032 0.2199 -0.51987 + 53400 0.1013 0.2192 -0.52050 + 53401 0.0994 0.2186 -0.52119 + 53402 0.0975 0.2180 -0.52187 + 53403 0.0956 0.2174 -0.52246 + 53404 0.0936 0.2168 -0.52288 + 53405 0.0917 0.2163 -0.52309 + 53406 0.0898 0.2158 -0.52311 + 53407 0.0878 0.2153 -0.52305 + 53408 0.0859 0.2149 -0.52303 + 53409 0.0840 0.2144 -0.52321 + 53410 0.0820 0.2141 -0.52368 + 53411 0.0801 0.2137 -0.52444 + 53412 0.0781 0.2134 -0.52542 + 53413 0.0761 0.2131 -0.52646 + 53414 0.0742 0.2128 -0.52744 + 53415 0.0722 0.2126 -0.52822 + 53416 0.0703 0.2124 -0.52877 + 53417 0.0683 0.2122 -0.52907 + 53418 0.0663 0.2120 -0.52916 + 53419 0.0644 0.2119 -0.52910 + 53420 0.0624 0.2118 -0.52897 + 53421 0.0605 0.2117 -0.52883 + 53422 0.0585 0.2117 -0.52876 + 53423 0.0566 0.2117 -0.52882 + 53424 0.0546 0.2117 -0.52907 + 53425 0.0526 0.2118 -0.52951 + 53426 0.0507 0.2118 -0.53014 + 53427 0.0487 0.2119 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-0.51725 + 53585 -0.0356 0.4175 -0.51578 + 53586 -0.0344 0.4188 -0.51436 + 53587 -0.0332 0.4200 -0.51310 + 53588 -0.0320 0.4212 -0.51204 + 53589 -0.0309 0.4224 -0.51120 + 53590 -0.0297 0.4236 -0.51055 + 53591 -0.0284 0.4248 -0.51006 + 53592 -0.0272 0.4260 -0.50966 + 53593 -0.0260 0.4271 -0.50922 + 53594 -0.0247 0.4283 -0.50872 + 53595 -0.0235 0.4294 -0.50809 + 53596 -0.0222 0.4305 -0.50729 + 53597 -0.0210 0.4315 -0.50638 + 53598 -0.0197 0.4326 -0.50535 + 53599 -0.0184 0.4336 -0.50431 + 53600 -0.0171 0.4347 -0.50339 + 53601 -0.0158 0.4357 -0.50273 + 53602 -0.0145 0.4367 -0.50244 + 53603 -0.0132 0.4376 -0.50247 + 53604 -0.0119 0.4386 -0.50267 + 53605 -0.0106 0.4395 -0.50286 + 53606 -0.0093 0.4404 -0.50287 + 53607 -0.0079 0.4413 -0.50263 + 53608 -0.0066 0.4422 -0.50217 Index: /branches/rel-1-1/psLib/test/astro/execute_tap =================================================================== --- /branches/rel-1-1/psLib/test/astro/execute_tap (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/execute_tap (revision 12167) @@ -0,0 +1,4 @@ +make test +./tap_psSphereOps_all +./tap_psEarthOrientation_corrections +./tap_psEarthOrientation_motion Index: /branches/rel-1-1/psLib/test/astro/tap_psCoord.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psCoord.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psCoord.c (revision 12167) @@ -0,0 +1,371 @@ +/** @file tst_psCoord.c +* +* @brief The code will ... +* +* @author GLG, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-19 20:42:21 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define ORDER_X 2 +#define ORDER_Y 3 +#define ORDER_Z 4 +#define ORDER_T 5 +#define N 10 +#define COLOR 1.0 +#define MAGNITUDE 1.0 + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(57); + + // Test psPlaneAlloc() + { + psMemId id = psMemGetId(); + psPlane *myP = psPlaneAlloc(); + ok(myP != NULL, "psPlaneAlloc() returned non-NULL"); + skip_start(myP == NULL, 4, "Skipping tests because psPlaneAlloc() returned NULL"); + ok(isnan(myP->x), "psPlane->x is NAN"); + ok(isnan(myP->y), "psPlane->y is NAN"); + ok(isnan(myP->xErr), "psPlane->xErr is NAN"); + ok(isnan(myP->yErr), "psPlane->yErr is NAN"); + skip_end(); + psFree(myP); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psPlaneTransformAlloc() + { + psMemId id = psMemGetId(); + psPlaneTransform *myPT = psPlaneTransformAlloc(ORDER_X, ORDER_Y); + ok(myPT != NULL, "psPlaneTransformAlloc() returned non-NULL"); + skip_start(myPT == NULL, 6, "Skipping tests because psPlaneTransformAlloc() returned NULL"); + ok(myPT->x->nX == ORDER_X, "psPlaneTransform->x->nX set correctly"); + ok(myPT->y->nX == ORDER_X, "psPlaneTransform->y->nX set correctly"); + ok(myPT->x->nY == ORDER_Y, "psPlaneTransform->x->nY set correctly"); + ok(myPT->y->nY == ORDER_Y, "psPlaneTransform->y->nY set correctly"); + psFree(myPT); + + // Attempt to specify negative x order and verify NULL returned and + // errror message generated + myPT = psPlaneTransformAlloc(-1, 1); + ok(myPT == NULL, "psPlaneTransformAlloc(-1, 1) returned NULL"); + psFree(myPT); + + myPT = psPlaneTransformAlloc(1, -1); + ok(myPT == NULL, "psPlaneTransformAlloc(1, -11) returned NULL"); + psFree(myPT); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psPlaneDistortAlloc() + { + psMemId id = psMemGetId(); + psPlaneDistort *myPD = psPlaneDistortAlloc(ORDER_X, ORDER_Y, ORDER_Z, ORDER_T); + ok(myPD != NULL, "psPlaneDistortAlloc() returned non-NULL"); + skip_start(myPD == NULL, 12, "Skipping tests because psPlaneDistortAlloc() returned NULL"); + ok(myPD->x->nX == ORDER_X, "psPlaneDistort->x->nX set correctly"); + ok(myPD->x->nY == ORDER_Y, "psPlaneDistort->x->nY set correctly"); + ok(myPD->x->nZ == ORDER_Z, "psPlaneDistort->x->nZ set correctly"); + ok(myPD->x->nT == ORDER_T, "psPlaneDistort->x->nT set correctly"); + ok(myPD->y->nX == ORDER_X, "psPlaneDistort->y->nX set correctly"); + ok(myPD->y->nY == ORDER_Y, "psPlaneDistort->y->nY set correctly"); + ok(myPD->y->nZ == ORDER_Z, "psPlaneDistort->y->nZ set correctly"); + ok(myPD->y->nT == ORDER_T, "psPlaneDistort->y->nT set correctly"); + psFree(myPD); + + myPD = psPlaneDistortAlloc(-1, 1, 1, 1); + ok(myPD == NULL, "psPlaneDistortAlloc(-1, 1, 1, 1) returned NULL"); + psFree(myPD); + myPD = psPlaneDistortAlloc(1, -1, 1, 1); + ok(myPD == NULL, "psPlaneDistortAlloc(1, -1, 1, 1) returned NULL"); + psFree(myPD); + myPD = psPlaneDistortAlloc(1, 1, -1, 1); + ok(myPD == NULL, "psPlaneDistortAlloc(1, 1, -1, 1) returned NULL"); + psFree(myPD); + myPD = psPlaneDistortAlloc(1, 1, 1, -1); + ok(myPD == NULL, "psPlaneDistortAlloc(1, 1, 1, -1) returned NULL"); + psFree(myPD); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // We test psPlaneTransformApply() on a simple identity transformation for few x,y pairs. + { + psMemId id = psMemGetId(); + psPlane* in = psPlaneAlloc(); + ok(in != NULL, "psPlaneAlloc() returned non-NULL"); + skip_start(in == NULL, 2, "Skipping tests because psPlaneAlloc() returned NULL"); + psPlaneTransform* pt = psPlaneTransformAlloc(2,2); + ok(pt != NULL, "psPlaneTransformAlloc() returned non-NULL"); + skip_start(pt == NULL, 1, "Skipping tests because psPlaneTransformAlloc() returned NULL"); + + // Set transform coefficients so the x coord input will equal x coord output, same for y + pt->x->coeff[1][0] = 1.0; + pt->y->coeff[0][1] = 1.0; + + // Apply transform for several points + bool errorFlag = false; + for (psS32 i = 0; i < N; i++) + { + in->x = (psF64) i; + in->y = (psF64) (i + 5.0); + in->xErr = 0.0; + in->yErr = 0.0; + + // XXX: psPlane *out = psPlaneTransformApply(out, pt, in); causes a seg-fault. Why? + psPlane *out = psPlaneTransformApply(NULL, pt, in); + if(out == NULL) { + diag("ERROR: psPlaneTransformApply() returned NULL"); + errorFlag = true; + } else { + if (FLT_EPSILON < fabs(out->x - in->x)) { + diag("ERROR: out.x is %lf, should be %lf", out->x, in->x); + errorFlag = true; + } + + if (FLT_EPSILON < fabs(out->y - in->y)) { + diag("ERROR: out.y is %lf, should be %lf", out->y, in->y); + errorFlag = true; + } + } + psFree(out); + } + ok(!errorFlag, "psPlaneTransformApply() successful on several data points"); + psFree(pt); + psFree(in); + skip_end(); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneTransformApply should generate error message for NULL psPlaneTransform + if (1) { + psMemId id = psMemGetId(); + psPlane* in = psPlaneAlloc(); + psPlane *tmpPL = psPlaneTransformApply(NULL, NULL, in); + ok(tmpPL == NULL, "psPlaneTransformApply(NULL, NULL, in) returned NULL"); + psFree(in); + psFree(tmpPL); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneTransformApply should generate error message for NULL x coeff psPlaneTransform + if (1) { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psPlaneTransform *pt = psPlaneTransformAlloc(2,2); + psFree(pt->x); + pt->x = NULL; + psPlane *tmpPL = psPlaneTransformApply(NULL, pt, in); + ok(tmpPL == NULL, "psPlaneTransformApply(NULL, pt, in) returned NULL with NULL x coeff psPlaneTransform"); + psFree(in); + psFree(pt); + psFree(tmpPL); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneTransformApply Should generate error message for NULL y coeff psPlaneTransform"); + if (1) { + psMemId id = psMemGetId(); + psPlane* in = psPlaneAlloc(); + psPlaneTransform* pt = psPlaneTransformAlloc(2,2); + psFree(pt->y); + pt->y = NULL; + psPlane *tmpPL = psPlaneTransformApply(NULL, pt, in); + ok(tmpPL == NULL, "psPlaneTransformApply(NULL, pt, in) returned NULL with NULL y coeff psPlaneTransform"); + psFree(tmpPL); + psFree(pt); + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneTransformApply() should generate error message for NULL psPlane"); + if (1) { + psMemId id = psMemGetId(); + psPlaneTransform* pt = psPlaneTransformAlloc(2,2); + psPlane *tmpPL = psPlaneTransformApply(NULL, pt, NULL); + ok(tmpPL == NULL, "psPlaneTransformApply(NULL, pt, NULL) did not return NULL"); + psFree(tmpPL); + psFree(pt); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // We test psPlaneDistortApply() on a simple identity transformation for few x,y pairs. + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + ok(in != NULL, "psPlaneAlloc() returned non-NULL"); + skip_start(in == NULL, 1, "Skipping tests because psPlaneAlloc() returned NULL"); + psPlaneDistort *pt = psPlaneDistortAlloc(2, 2, 2, 2); + ok(pt != NULL, "psPlaneDistortAlloc() returned non-NULL"); + skip_start(pt == NULL, 1, "Skipping tests because psPlaneTransformAlloc() returned NULL"); + + pt->x->coeff[1][0][0][0] = 1.0; + pt->x->coeff[0][0][1][0] = 1.0; + pt->x->coeff[0][0][0][1] = 1.0; + pt->y->coeff[0][1][0][0] = 1.0; + pt->y->coeff[0][0][1][0] = 1.0; + pt->y->coeff[0][0][0][1] = 1.0; + + bool errorFlag = false; + for (psS32 i = 0; i < N; i++) + { + in->x = (psF64) i; + in->y = (psF64) (i + 5.0); + in->xErr = 0.0; + in->yErr = 0.0; + + // XXX: psPlane *out = psPlaneDistortApply(out, pt, in, COLOR, MAGNITUDE); generates a seg-fault. Why? + psPlane *out = psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE); + if(out == NULL) { + diag("ERROR: psPlaneDistortApply() returned NULL"); + errorFlag = true; + } else { + if (FLT_EPSILON < fabs(out->x - COLOR - MAGNITUDE - in->x)) { + diag("ERROR: out->x is %lf, should be %lf", + out->x, in->x + COLOR + MAGNITUDE); + errorFlag = true; + } + if (FLT_EPSILON < fabs(out->y - COLOR - MAGNITUDE - in->y)) { + diag("ERROR: out->y is %lf, should be %lf", + out->y, in->y + COLOR + MAGNITUDE); + errorFlag = true; + } + } + psFree(out); + } + ok(!errorFlag, "psPlaneDistortApply() successful on several data points"); + psFree(in); + psFree(pt); + skip_end(); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneDistortApply() should generate an error message for null psPlaneDistort + if (1) { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psPlane *tmpPL = psPlaneDistortApply(NULL, NULL, in, COLOR, MAGNITUDE); + ok(tmpPL == NULL, "psPlaneDistortApply(NULL, NULL, in, COLOR, MAGNITUDE) returned NULL"); + psFree(tmpPL); + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneDistortApply() should generate an error message for null x member psPlaneDistort + if (1) { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psPlaneDistort *pt = psPlaneDistortAlloc(2, 2, 2, 2); + psFree(pt->x); + pt->x = NULL; + psPlane *tmpPL = psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE); + ok(tmpPL == NULL, "psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE) with NULL pt->x member"); + psFree(tmpPL); + psFree(pt); + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneDistortApply() should generate an error message for null y member psPlaneDistort + if (1) { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psPlaneDistort *pt = psPlaneDistortAlloc(2, 2, 2, 2); + psFree(pt->y); + pt->y = NULL; + psPlane *tmpPL = psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE); + ok(tmpPL == NULL, "psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE) with NULL pt->y member"); + psFree(tmpPL); + psFree(pt); + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPlaneDistortApply() should generate an error message for null input psPlane + if (1) { + psMemId id = psMemGetId(); + psPlaneDistort *pt = psPlaneDistortAlloc(2, 2, 2, 2); + psPlane *tmpPL = psPlaneDistortApply(NULL, pt, NULL, COLOR, MAGNITUDE); + ok(tmpPL == NULL, "psPlaneDistortApply(NULL, pt, NULL, COLOR, MAGNITUDE) returned NULL"); + psFree(tmpPL); + psFree(pt); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psPixelsTransform() + // psPixelsTransform() should generate error message for NULL input pixels + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(1, 3); + psPixels *output = psPixelsTransform(NULL, NULL, trans); + ok(output == NULL, "psPixelsTransform(NULL, NULL, trans) returned NULL"); + psFree(trans); + psFree(output); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psPixelsTransform() should generate error message for NULL input PlaneTransform + { + psMemId id = psMemGetId(); + psPixels *input = psPixelsAlloc(2); + psPixels *output = psPixelsTransform(NULL, input, NULL); + ok(output == NULL, "psPixelsTransform(NULL, input, NULL) returned NULL"); + psFree(output); + psFree(input); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // We test psPixelsTransform() on several data points + { + psMemId id = psMemGetId(); + psPixels *input = psPixelsAlloc(2); + input->n = 2; + input->data[0].x = 1.0; + input->data[0].y = 1.0; + input->data[1].x = 1.0; + input->data[1].y = 6.0; + psPlaneTransform *trans = psPlaneTransformAlloc(1, 3); + trans->x->coeff[0][0] = 0; + trans->x->coeff[1][0] = 1.0; + trans->y->coeff[0][0] = 0; + trans->y->coeff[0][0] = 0; + trans->y->coeff[0][2] = 0.5; + + // XXX: Fix this + psPixels *output = psPixelsTransform(NULL, input, trans); + int nExpected = 9; + if (output->n != nExpected) + { + diag("ERROR: psPixelsTransform failed to return the expected number of pixels.\n"); + printf("\n output returned with %ld pixels\n\n", output->n); + for (int i = 0; i < output->n; i++) { + printf(" (%6.2lf, %6.2lf) pixel %d\n", output->data[i].x, output->data[i].y, i+1); + } + return 3; + } + + psFree(trans); + psFree(input); + psFree(output); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + /* HERE + */ +} + Index: /branches/rel-1-1/psLib/test/astro/tap_psCoord01.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psCoord01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psCoord01.c (revision 12167) @@ -0,0 +1,1047 @@ +/** @file tst_psCoord01.c +* +* @brief The code will test several functions with PSLib source file +* psCoord.c +* +* @author Eric Van Alst, MHPCC +* +* XXX: must do (r,d) -> (x, y) -> (r, d) test to ensure correctness. +* XXX: The (Xs, Ys) scales are not be used properly. +* XXX: Much work remains to be done. The original tests defined correct +* input/output pairs and compared results. It's not clear how those +* values were obtained, and they nearly all fail now. +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 04:11:54 $ +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 04:11:54 $ +* +* Copyright 2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOL 0.0001 +#define TESTPOINTS 4 +#define DEG_INC 30.0 + +#define MY_TINY 0.0001 +#define PS_COMPARE_TINY_THEN_PRINT_ERROR(ACTUAL, EXPECT, TESTSTATUS) \ +if (MY_TINY < fabs(EXPECT - ACTUAL)) { \ + diag("%s is %lg, should be %lg", #ACTUAL, ACTUAL, EXPECT, TESTSTATUS); \ + errorFlag = true; \ +} + + +// alpha, delta, alpha-center, delta-center, scale-x, scale-y +psF64 projectionTestPoint[TESTPOINTS][6] = { + { 0.785398, 0.785398, 0.000000, 0.000000, 1.000000, 1.000000 }, + { 0.100000, 1.500000, 0.500000, 0.250000, 1.000000, 1.000000 }, + { 0.628319, 0.448799, 0.000000, 0.000000, 0.250000, 0.750000 }, + { -1.047196, 0.222222, -0.250000, 0.000000, 1.500000, 1.250000 } + }; + +// Expected values for TAN +psF64 projectionTanExpected[TESTPOINTS][2] = { + { -1.000000, -1.414214 }, + { 0.088884, -3.066567 }, + { -0.181636, -0.446444 }, + { 1.535818, -0.404231 } + }; + +// Expected values for SIN +psF64 projectionSinExpected[TESTPOINTS][2] = { + { -0.500000, -0.707101 }, + { 0.027546, -0.950366 }, + { -0.132394, -0.325413 }, + { 1.046712, -0.275497 } + }; + +// Expected values for AIT +psF64 projectionAitExpected[TESTPOINTS][2] = { + { -0.549175, 0.523375 }, + { 0.027895, 0.313807 }, + { -0.162822, 0.607646 }, + { 1.455312, 0.955388 } + }; + +// Expected values for PAR +psF64 projectionParExpected[TESTPOINTS][2] = { + { -0.541244, 0.545532 }, + { 0.027703, 0.329366 }, + { -0.157157, 0.633550 }, + { 1.432951, 0.971372 } + }; + +// Testpoints, offset and expected values for psSphereSetOffset test +#define TESTPOINTS_OFFSET 4 +psF64 setOffsetTestpoint[TESTPOINTS_OFFSET][2] = { + { 0.50, 0.50 }, + {-0.50, 0.50 }, + { 0.00, 0.00 }, + { 1.50, -0.10 } + }; + +psF64 setOffsetOffset[TESTPOINTS_OFFSET][2] = { + { 0.190761, -0.272205 }, + {-0.553049, -0.460926 }, + { 0.100335,-14.172222 }, + {14.172222, -0.100335 } + }; + +psF64 setOffsetResult[TESTPOINTS_OFFSET][2] = { + //XXX: Eugene says his values are correct, so i'm changing these values to the output. + // { 0.25, 0.75 }, + // { 0.20, 0.80 }, + // {-0.10, 1.50 }, + // { 0.00, 0.00 } + { 0.68702, 0.230294}, + { -0.966388, 0.0608434 }, + {0.10, -1.50 }, + { 3.00141, -0.0140538 } + }; + +psF64 getOffsetTestpoint1[TESTPOINTS_OFFSET][2] = { + { 0.00, 0.00 }, + {-0.25, 0.50 }, + { 0.50, -0.25 }, + { 0.25, -0.10 } + }; + +psF64 getOffsetTestpoint2[TESTPOINTS_OFFSET][2] = { + { 0.75, 0.25 }, + { 0.40, -0.60 }, + { 1.50, 0.50 }, + { 0.10, 0.75 } + }; + +psF64 getOffsetResult[TESTPOINTS_OFFSET][2] = { + //XXX: Eugene says his values are correct, so i'm changing these values to the output. + // { -0.931596, -0.348976 }, + // { -1.632830, 2.649629 }, + // { -2.166795, -1.707211 }, + // { 0.167752, -1.151351 } + { 0.931596, 0.348976 }, + { 1.632830, -2.649629 }, + { 2.166795, 1.707211 }, + { -0.167752, 1.151351 } + }; + + +psS32 main( psS32 argc, char *argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(87); + + // psProjectionAlloc() + { + psMemId id = psMemGetId(); + psProjection *myProjection = psProjectionAlloc(1.1, 2.2, 3.3, 4.4, PS_PROJ_AIT); + ok(myProjection != NULL, "psProjectionAlloc() returned non-NULL"); + ok(myProjection->R == 1.1, "psProjection->R set correctly"); + ok(myProjection->D == 2.2, "psProjection->D set correctly"); + ok(myProjection->Xs == 3.3, "psProjection->Xs set correctly"); + ok(myProjection->Ys == 4.4, "psProjection->Ys set correctly"); + ok(myProjection->type == PS_PROJ_AIT, "psProjection->type set correctly"); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testProjectTan() + // We do a psProject() then a psDeproject() on several data points and + // verify that we produce the original data point. + // XXX: This test currently fails. + { + psMemId id = psMemGetId(); + psSphere *in = psSphereAlloc(); + psSphere *inTest = NULL; + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + psPlane *out = psProject(NULL, in, myProjection); + if(out == NULL) { + diag("psProject() returned NULL"); + errorFlag = true; + } else { + inTest = psDeproject(NULL, out, myProjection); + if(fabs(out->x - projectionTanExpected[i][0]) > ERROR_TOL) { + diag("TEST ERROR: Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionTanExpected[i][0]); + errorFlag = true; + } + if(fabs(out->y - projectionTanExpected[i][1]) > ERROR_TOL) { + diag("TEST ERROR: Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionTanExpected[i][1]); + errorFlag = true; + } + + // Verify output is as expected + if(fabs(in->r - inTest->r) > ERROR_TOL) { + diag("TEST ERROR: (in->r, inTest->r) (%.2f %.2f)\n", in->r, inTest->r); + errorFlag = true; + } + if(fabs(in->d - inTest->d) > ERROR_TOL) { + diag("TEST ERROR: (in->d, inTest->d) (%.2f %.2f)\n", in->d, inTest->d); + errorFlag = true; + } + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + psFree(inTest); + psFree(out); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testDeprojectTan() + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and projection members + in->x = projectionTanExpected[i][0]; + in->y = projectionTanExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + psSphere *out = psDeproject(NULL, in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + diag("psDeproject() returned NULL"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + diag("Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + errorFlag = true; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + diag("Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + errorFlag = true; + } + } + psFree(out); + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testProjectSin() + { + psMemId id = psMemGetId(); + psSphere *in = psSphereAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_SIN); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + psPlane *out = psProject(NULL, in, myProjection); + + // Verify output not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->x - projectionSinExpected[i][0]) > ERROR_TOL) { + diag("Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionSinExpected[i][0]); + errorFlag = true; + } + if(fabs(out->y - projectionSinExpected[i][1]) > ERROR_TOL) { + diag("Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionSinExpected[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testDeprojectSin() + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_SIN); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and projection members + in->x = projectionSinExpected[i][0]; + in->y = projectionSinExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + psSphere *out = psDeproject(NULL, in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + diag("Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + errorFlag = true; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + diag("Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testProjectAit() + { + psMemId id = psMemGetId(); + psSphere *in = psSphereAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_AIT); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + psPlane *out = psProject(NULL, in, myProjection); + + // Verify output not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->x - projectionAitExpected[i][0]) > ERROR_TOL) { + diag("Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionAitExpected[i][0]); + errorFlag = true; + } + if(fabs(out->y - projectionAitExpected[i][1]) > ERROR_TOL) { + diag("Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionAitExpected[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testDeprojectAit() + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_AIT); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and projection members + in->x = projectionAitExpected[i][0]; + in->y = projectionAitExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + psSphere *out = psDeproject(NULL, in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + diag("Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + errorFlag = true; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + diag("Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testProjectPar() + { + psMemId id = psMemGetId(); + psSphere *in = psSphereAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_PAR); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + psPlane *out = psProject(NULL, in, myProjection); + + // Verify output not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->x - projectionParExpected[i][0]) > ERROR_TOL) { + diag("Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionParExpected[i][0]); + errorFlag = true; + } + if(fabs(out->y - projectionParExpected[i][1]) > ERROR_TOL) { + diag("Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionParExpected[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testDeprojectPar() + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_PAR); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) + { + bool errorFlag = false; + // Initialize input and projection members + in->x = projectionParExpected[i][0]; + in->y = projectionParExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + psSphere *out = psDeproject(NULL, in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + diag("Return null not expected"); + errorFlag = true; + } else { + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + diag("Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + errorFlag = true; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + diag("Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + errorFlag = true; + } + psFree(out); + } + ok(!errorFlag, "psProject()/psDeproject() successful for test point %d\n", i); + } + + psFree(in); + psFree(myProjection); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psProject(): Invoke function with null coordinate argument + // Following should generate an error message for null coord arg + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + psPlane *out = psProject(NULL, NULL, myProjection); + ok(out == NULL, "psProject(NULL, NULL, xxx) returned NULL"); + psFree(myProjection); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Invoke function with null projection argument + // Following should generate an error message for null projection arg + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *in = psSphereAlloc(); + psPlane *out = psProject(NULL, in, NULL); + ok(out == NULL, "psProject(NULL, in, NULL) returned NULL"); + psFree(in); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Invoke function with unallowed projection type + // Following should generate an error message for unallowed projection type + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + myProjection->type = PS_PROJ_NTYPE; + psSphere *in = psSphereAlloc(); + psPlane *out = psProject(NULL, in,myProjection); + ok(out == NULL, "psProject(NULL, in, out) returned NULL with unallowed projection type"); + psFree(myProjection); + psFree(in); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testDeprojectFail() + psMemId id = psMemGetId(); + + + // Invoke function with null coordinate argument + // Following should generate an error message for null coord arg + // XXX: We do not test the error generation + { + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + psSphere *out = psDeproject(NULL, NULL, myProjection); + ok(out == NULL, "psDeproject(NULL, NULL, myProjection) returned NULL"); + psFree(myProjection); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with null projection argument + // Following should generate an error message for null projection arg + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psPlane *in = psPlaneAlloc(); + psSphere *out = psDeproject(NULL, in, NULL); + ok(out == NULL, "psDeproject(NULL, in, NULL) returned NULL"); + psFree(in); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with unallowed projection type + // Following should generate an error message for unallowed projection type + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psProjection *myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + psPlane *in = psPlaneAlloc(); + myProjection->type = PS_PROJ_NTYPE; + psSphere *out = psDeproject(NULL, in,myProjection); + ok(out == NULL, "psDeproject(NULL, in,myProjection) returned NULL with unallowed projection type"); + psFree(myProjection); + psFree(in); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // testSetOffsetSphere() + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = NULL; + psSphere *offset = psSphereAlloc(); + psSphere *tmpOffset = psSphereAlloc(); + bool errorFlag = false; + + // Initialize first position + position1->r = DEG_TO_RAD(90.0); + position1->d = DEG_TO_RAD(45.0); + position1->rErr = 0.0; + position1->dErr = 0.0; + + // Using various offset verify spherical offset + // Use all the valid unit types + for (psF64 r = 0.0; r < 180.0; r += DEG_INC) + { + for (psF64 d = 0.0; d < 90.0; d += DEG_INC) { + + offset->r = DEG_TO_RAD(r); + offset->d = DEG_TO_RAD(d); + offset->rErr = 0.0; + offset->dErr = 0.0; + + position2 = psSphereSetOffset(position1, offset, PS_SPHERICAL, PS_RADIAN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 1); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 2); + psFree(position2); + + tmpOffset->r = RAD_TO_DEG(offset->r); + tmpOffset->d = RAD_TO_DEG(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_DEGREE); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 3); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 4); + psFree(position2); + + tmpOffset->r = RAD_TO_MIN(offset->r); + tmpOffset->d = RAD_TO_MIN(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_ARCMIN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 5); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 6); + psFree(position2); + + tmpOffset->r = RAD_TO_SEC(offset->r); + tmpOffset->d = RAD_TO_SEC(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_ARCSEC); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 7); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 8); + psFree(position2); + } + } + ok(!errorFlag, "psSphereSetOffset() successful on several dat points"); + + psFree(position1); + psFree(offset); + psFree(tmpOffset); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to call function with null input coordinate + // Following should generate error message null input coord + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *offset = psSphereAlloc(); + psSphere *position2 = psSphereSetOffset(NULL, offset, PS_LINEAR, PS_ARCSEC); + ok(position2 == NULL, "psSphereSetOffset() returned NULL with NULL input coordinate"); + psFree(position2); + psFree(offset); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to call function with null offset + // Following should generate error message null offset + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereSetOffset(position1, NULL, PS_LINEAR, PS_ARCSEC); + ok(position2 == NULL, "psSphereSetOffset() returned NULL with NULL offset"); + psFree(position1); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to call function with unallowed mode + // Following should generate error message unallowed mode + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *offset = psSphereAlloc(); + psSphere *position2 = psSphereSetOffset(position1, offset, 0x54321, 0); + ok(position2 == NULL, "psSphereSetOffset() returned NULL with unallowed mode"); + psFree(position1); + psFree(position2); + psFree(offset); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to call function with unallowed unit + // Following should generate an error message unallowed unit + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *offset = psSphereAlloc(); + psSphere *position2 = psSphereSetOffset(position1, offset, PS_SPHERICAL, 0x54321); + ok(position2 == NULL, "psSphereSetOffset() returned NULL with unallowed unit"); + psFree(position1); + psFree(position2); + psFree(offset); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testSetOffsetLinear() + { + psMemId id = psMemGetId(); + psSphere *coord = psSphereAlloc(); + psSphere *offset = psSphereAlloc(); + psSphere *out = NULL; + bool errorFlag = false; + + for(psS32 i = 0; i < TESTPOINTS_OFFSET; i++) + { + bool errorFlag = false; + coord->r = setOffsetTestpoint[i][0]; + coord->d = setOffsetTestpoint[i][1]; + + offset->r = setOffsetOffset[i][0]; + offset->d = setOffsetOffset[i][1]; + + out = psSphereSetOffset(coord, offset, PS_LINEAR, PS_RADIAN); + + if(fabs(out->r - setOffsetResult[i][0]) > ERROR_TOL) { + diag("Testpoint %d: Result out->r = %lg not equal to expected %lg", + i, out->r, setOffsetResult[i][0]); + errorFlag = true; + } + if(fabs(out->d - setOffsetResult[i][1]) > ERROR_TOL) { + diag("Testpoint %d: Result out->d = %lg not equal to expected %lg", + i,out->d, setOffsetResult[i][1]); + errorFlag = true; + } + + psFree(out); + } + psFree(coord); + psFree(offset); + ok(!errorFlag, "psSphereSetOffset(), linear, successful on several data points"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testGetOffsetSphere() + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereAlloc(); + psSphere *offset = NULL; + bool errorFlag = false; + position1->r = DEG_TO_RAD(90.0); + position1->d = DEG_TO_RAD(45.0); + position1->rErr = 0.0; + position1->dErr = 0.0; + + for (psF64 r = 0.0; r < 180.0;r += DEG_INC) + { + for (psF64 d = 0.0;d < 90.0; d += DEG_INC) { + position2->r = DEG_TO_RAD(r); + position2->d = DEG_TO_RAD(d); + position2->rErr = 0.0; + position2->dErr = 0.0; + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_RADIAN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 1); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 1); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_DEGREE); + offset->r = DEG_TO_RAD(offset->r); + offset->d = DEG_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_ARCMIN); + offset->r = MIN_TO_RAD(offset->r); + offset->d = MIN_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_ARCSEC); + offset->r = SEC_TO_RAD(offset->r); + offset->d = SEC_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + } + } + psFree(position1); + psFree(position2); + ok(!errorFlag, "psSphereSetOffset(), linear, successful on several data points"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with null position 1 parameter + // Following should generate an error message for null position + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position2 = psSphereAlloc(); + psSphere *offset = psSphereGetOffset(NULL, position2, PS_LINEAR, 0); + ok(offset == NULL, "psSphereGetOffset() returned NULL with null position 1 parameter"); + psFree(offset); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with null position 2 parameter + // Following should generate an error message for null position + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *offset = psSphereGetOffset(position1, NULL, PS_LINEAR, 0); + ok(offset == NULL, "psSphereGetOffset() returned NULL with null position 2 parameter"); + psFree(offset); + psFree(position1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with unallowed mode + // Following should generate an error message for unallowed mode + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereAlloc(); + psSphere *offset = psSphereGetOffset(position1, position2, 0x54321, 0); + ok(offset == NULL, "psSphereGetOffset() returned NULL with unallowed mode"); + psFree(offset); + psFree(position1); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with unallowed unit type + // Following should generate an error message for unallowed unit type + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereAlloc(); + psSphere *offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, 0x54321); + ok(offset == NULL, "psSphereGetOffset() returned NULL with unallowed unit type"); + psFree(offset); + psFree(position1); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with coordinate 1 declination value 90.0 degree + // Following should generate warning message + // XXX: We do not test the warning generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereAlloc(); + position1->d = DEG_TO_RAD(90.0); + psSphere *offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, PS_RADIAN); + ok(offset == NULL, "psSphereGetOffset() returned NULL with coordinate 1 declination value 90.0 degree"); + psFree(offset); + psFree(position1); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to invoke function with coordinate 2 declination value 90.0 degree + // Following should generate warning message + // XXX: We do not test the warning generation + { + psMemId id = psMemGetId(); + psSphere *position1 = psSphereAlloc(); + psSphere *position2 = psSphereAlloc(); + position1->d = DEG_TO_RAD(45.0); + position2->d = DEG_TO_RAD(90.0); + psSphere *offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, PS_RADIAN); + ok(offset == NULL, "psSphereGetOffset() returned NULL with coordinate 2 declination value 90.0 degree"); + psFree(offset); + psFree(position1); + psFree(position2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testGetOffsetLinear() + { + psMemId id = psMemGetId(); + psSphere *coord1 = psSphereAlloc(); + psSphere *coord2 = psSphereAlloc(); + bool errorFlag = false; + + for(psS32 i = 0; i < TESTPOINTS_OFFSET; i++) + { + bool errorFlag = false; + coord1->r = getOffsetTestpoint1[i][0]; + coord1->d = getOffsetTestpoint1[i][1]; + coord2->r = getOffsetTestpoint2[i][0]; + coord2->d = getOffsetTestpoint2[i][1]; + psSphere *out = psSphereGetOffset(coord1, coord2, PS_LINEAR, PS_RADIAN); + if (out == NULL) { + diag("TEST ERROR: psSphereGetOffset() returned NULL"); + errorFlag = true; + } else { + if(fabs(out->r - getOffsetResult[i][0]) > ERROR_TOL) { + diag("Testpoint %d: Result out->r = %lg not equal to expected %lg", + i, out->r, getOffsetResult[i][0]); + errorFlag = true; + } + if(fabs(out->d - getOffsetResult[i][1]) > ERROR_TOL) { + diag("Testpoint %d: Result out->d = %lg not equal to expected %lg", + i,out->d, getOffsetResult[i][1]); + errorFlag = true; + } + psFree(out); + } + } + psFree(coord1); + psFree(coord2); + ok(!errorFlag, "psSphereGetOffset() worked on several data points"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + /* HERE + #define DEG_INC2 15.0 + #define VERBOSE 0 + // testProjectTanDeProjectTan() + // XXX: Get rid of this? + { + psMemId id = psMemGetId(); + bool errorFlag = false; + // + // I'm not convinced that the p_psProject() and p_psDeproject() functions work + // correctly. If we project a set of coordinates over a wide range of (R, D) + // values, then deproject them, the original (R, D) values are only produced + // when D is larger than 0. This code demonstrates that. + // + psProjection *tmpProj = psProjectionAlloc(0.0,0.0,10.0,10.0,PS_PROJ_TAN); + psPlane planeCoord01; + psSphere skyCoord01; + psSphere skyCoord02; + for (psF32 R = -90.0 ; R <= 90.0 ; R+= DEG_INC2) { + for (psF32 D = -90.0 ; D <= 90.0 ; D+= DEG_INC2) { + if ((fabs(R) != 90.0) && (fabs(D) != 90.0)) { + skyCoord01.r = DEG_TO_RAD(R); + skyCoord01.d = DEG_TO_RAD(D); + p_psProject(&planeCoord01, &skyCoord01, tmpProj); + p_psDeproject(&skyCoord02, &planeCoord01, tmpProj); + if ((fabs(skyCoord01.r - skyCoord02.r) < FLT_EPSILON) && + (fabs(skyCoord01.d - skyCoord02.d) < FLT_EPSILON)) { + if (VERBOSE) { + printf("CORRECT: (%.2fr %.2fd) (%.2fr %.2fd) -> (%.2f %.2f) -> (%.2fr %.2fd)\n", R, D, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d); + } + } else { + diag("TEST ERROR: (%.2fr %.2fd) (%.2fr %.2fd) -> (%.2f %.2f) -> (%.2fr %.2fd)\n", R, D, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d); + errorFlag = true; + } + } + } + } + ok(!errorFlag, "p_psProject()/p_psDeproject() worked on several data points"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + */ +} + + + Index: /branches/rel-1-1/psLib/test/astro/tap_psCoord02.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psCoord02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psCoord02.c (revision 12167) @@ -0,0 +1,554 @@ +/** @file tst_psCoord02.c +* +* @brief This file contains test code for: +* +* @author GLG, MHPCC +* +* XXX: These tests should probably be split among several files +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 01:01:05 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define PS_PERCENT_COMPARE(X, Y, PERCENT_FRACTION) (fabs((Y)-(X))/fabs(X) < (PERCENT_FRACTION)) +#define PS_GEN_RAN_FLOAT (-0.5 + ((psF32)rand()) / ((psF32) RAND_MAX)) +#define RANDOM_SEED 1995 + +// These macros determine the number of x/y test points which will be x-formed. +#define TST04_X_MIN 0.0 +#define TST04_X_MAX 10.0 +#define TST04_Y_MIN 0.0 +#define TST04_Y_MAX 10.0 +#define TST04_NUM 5.0 +// These macros define the max sizes of the various input transforms. +#define TST04_T1_X_X 2 +#define TST04_T1_X_Y 3 +#define TST04_T1_Y_X 3 +#define TST04_T1_Y_Y 3 +#define TST04_T2_X_X 3 +#define TST04_T2_X_Y 3 +#define TST04_T2_Y_X 3 +#define TST04_T2_Y_Y 3 + +/****************************************************************************** +tstTransforms(t1, t2, t3): this function generates a set of arbitrary x/y +coordinates, then transforms them into output coordinates via the t3 +transform, as well as the t1 followed by the t2 transform. It verifies the +output coordinates are identical and returns TRUE if so. Otherwise, it prints +a diag message and returns FALSE. + *****************************************************************************/ +bool tstTransforms(psPlaneTransform *t1, psPlaneTransform *t2, psPlaneTransform *t3) +{ + bool testStatus = true; + psPlane *in = psPlaneAlloc(); + in->xErr = 0.0; + in->yErr = 0.0; + + for (in->x = TST04_X_MIN ; in->x <= TST04_X_MAX ; in->x+= (TST04_X_MAX-TST04_X_MIN) / TST04_NUM) { + for (in->y = TST04_Y_MIN ; in->y <= TST04_Y_MAX ; in->y+= (TST04_Y_MAX-TST04_Y_MIN) / TST04_NUM) { + // Apply the t1/t2 transforms individually to the in coords. + psPlane *mid = psPlaneTransformApply(NULL, t1, in); + if (mid == NULL) { + diag("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(in); + return(false); + } + + psPlane *outT1T2 = psPlaneTransformApply(NULL, t2, mid); + if (outT1T2 == NULL) { + diag("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(mid); + return(false); + } + + // Apply the t3 transforms individually to the in coords. + psPlane *outT3 = psPlaneTransformApply(NULL, t3, in); + if (outT3 == NULL) { + diag("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(mid); + psFree(outT1T2); + return(false); + } + + // Verify that the results are identical. + if (!PS_PERCENT_COMPARE(outT3->x, outT1T2->x, 0.01)) { + diag("TEST ERROR: x is %f, should be %f\n", outT3->x, outT1T2->x); + testStatus = false; + } + // Verify that the results are identical. + if (!PS_PERCENT_COMPARE(outT3->y, outT1T2->y, 0.01)) { + diag("TEST ERROR: y is %f, should be %f\n", outT3->y, outT1T2->y); + testStatus = false; + } + if (0) { + if (fabs(outT3->x - outT1T2->x) > FLT_EPSILON) { + printf("TEST ERROR: x is %f, should be %f\n", outT3->x, outT1T2->x); + testStatus = false; + printf("(in->x, in->y) is (%f, %f)\n", in->x, in->y); + printf("(mid->x, mid->y) is (%f, %f)\n", mid->x, mid->y); + printf("(outT1T2->x, outT1T2->y) is (%f, %f)\n", outT1T2->x, outT1T2->y); + printf("(outT3->x, outT3->y) is (%f, %f)\n", outT3->x, outT3->y); + PS_POLY_PRINT_2D(t1->x); + PS_POLY_PRINT_2D(t1->y); + PS_POLY_PRINT_2D(t2->x); + PS_POLY_PRINT_2D(t2->y); + PS_POLY_PRINT_2D(t3->x); + PS_POLY_PRINT_2D(t3->y); + } + if (fabs(outT3->y - outT1T2->y) > FLT_EPSILON) { + printf("TEST ERROR: y is %f, should be %f\n", outT3->y, outT1T2->y); + testStatus = false; + printf("(in->x, in->y) is (%f, %f)\n", in->x, in->y); + printf("(mid->x, mid->y) is (%f, %f)\n", mid->x, mid->y); + printf("(outT1T2->x, outT1T2->y) is (%f, %f)\n", outT1T2->x, outT1T2->y); + printf("(outT3->x, outT3->y) is (%f, %f)\n", outT3->x, outT3->y); + PS_POLY_PRINT_2D(t1->x); + PS_POLY_PRINT_2D(t1->y); + PS_POLY_PRINT_2D(t2->x); + PS_POLY_PRINT_2D(t2->y); + PS_POLY_PRINT_2D(t3->x); + PS_POLY_PRINT_2D(t3->y); + } + } + psFree(mid); + psFree(outT1T2); + psFree(outT3); + } + } + + psFree(in); + return(testStatus); +} + +/****************************************************************************** +setCoeffs(t1, t2): this function sets the coefficients of the t1 and t2 +transforms to somewhat arbitrary values. + *****************************************************************************/ +int setCoeffs(psPlaneTransform *t1, psPlaneTransform *t2) +{ + for (psS32 t1xx = 0 ; t1xx < t1->x->nX+1 ; t1xx++) { + for (psS32 t1xy = 0 ; t1xy < t1->x->nY+1 ; t1xy++) { + t1->x->coeff[t1xx][t1xy] = PS_GEN_RAN_FLOAT; + } + } + + for (psS32 t1yx = 0 ; t1yx < t1->y->nX+1 ; t1yx++) { + for (psS32 t1yy = 0 ; t1yy < t1->y->nY+1 ; t1yy++) { + t1->y->coeff[t1yx][t1yy] = PS_GEN_RAN_FLOAT; + } + } + for (psS32 t2xx = 0 ; t2xx < t2->x->nX+1 ; t2xx++) { + for (psS32 t2xy = 0 ; t2xy < t2->x->nY+1 ; t2xy++) { + t2->x->coeff[t2xx][t2xy] = PS_GEN_RAN_FLOAT; + } + } + for (psS32 t2yx = 0 ; t2yx < t2->y->nX+1 ; t2yx++) { + for (psS32 t2yy = 0 ; t2yy < t2->y->nY+1 ; t2yy++) { + t2->y->coeff[t2yx][t2yy] = PS_GEN_RAN_FLOAT; + } + } + return(0); +} + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(25); + srand(RANDOM_SEED); + + // We test psPlaneTransformCombine() with a variety of input transforms + // as well as input coordinates + // + // The strategy here is to generate a pair of transforms t1 and t2 with a wide + // variety of sizes for the x/y components of the x/y transforms, then set the + // coefficients of t1/t2 to arbitray values, then generate a new transform t3 via + // psPlaneTransformCombine() function. Then, for several arbitrary input plane + // coordinates, we tarnsform them via the new transform t3, as well as + // individually via t1 then t2, and verify that they produce identical output + // coordinates. + // + { + psMemId id = psMemGetId(); + bool errorFlag = false; + for (psS32 t1xx = 0 ; t1xx < TST04_T1_X_X ; t1xx++) + { + for (psS32 t1xy = 0 ; t1xy < TST04_T1_X_Y ; t1xy++) { + for (psS32 t1yx = 0 ; t1yx < TST04_T1_Y_X ; t1yx++) { + for (psS32 t1yy = 0 ; t1yy < TST04_T1_Y_Y ; t1yy++) { + for (psS32 t2xx = 0 ; t2xx < TST04_T2_X_X ; t2xx++) { + for (psS32 t2xy = 0 ; t2xy < TST04_T2_X_Y ; t2xy++) { + for (psS32 t2yx = 0 ; t2yx < TST04_T2_Y_X ; t2yx++) { + for (psS32 t2yy = 0 ; t2yy < TST04_T2_Y_Y ; t2yy++) { + //printf("(%d %d %d %d %d %d %d %d)\n", t1xx, t1xy, t1yx, t1yy, t2xx, t2xy, t2yx, t2yy); + psPlaneTransform *trans1 = psPlaneTransformAlloc(PS_MAX(t1xx, t1yx), PS_MAX(t1xy, t1yy)); + psPlaneTransform *trans2 = psPlaneTransformAlloc(PS_MAX(t2xx, t2yx), PS_MAX(t2xy, t2yy)); + psPlaneTransform *trans3 = NULL; + setCoeffs(trans1, trans2); + trans3 = psPlaneTransformCombine(NULL, trans1, + trans2, psRegionSet(NAN,NAN,NAN,NAN), 0); + //XXX: the last two parameters are bogus. Needs to change. -rdd + + if (trans3 == NULL) { + diag("TEST ERROR: psPlaneTransformCombine() returned NULL"); + errorFlag = true; + } else { + bool testStatus = tstTransforms(trans1, trans2, trans3); + if (!testStatus) { + diag("TEST ERROR: psPlaneTransformCombine() did not produce correct results"); + errorFlag = true; + } + } + psFree(trans1); + psFree(trans2); + psFree(trans3); + } + } + } + } + } + } + } + } + ok(!errorFlag, "psPlaneTransformCombine() successful on a variety of transforms and data points"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Calling psPlaneTransformCombine with NULL trans1 + // Should generate error and return NULL + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans2 = psPlaneTransformAlloc(2, 2); + psPlaneTransform *trans3 = psPlaneTransformCombine(NULL, NULL, trans2, psRegionSet(0,0,0,0), 10); + ok(trans3 == NULL, "psPlaneTransformCombine() returned NULL with NULL trans1 input"); + psFree(trans2); + psFree(trans3); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Calling psPlaneTransformCombine with NULL trans2 + // Should generate error and return NULL.\n"); + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans1 = psPlaneTransformAlloc(2, 2); + psPlaneTransform *trans3 = psPlaneTransformCombine(NULL, trans1, NULL, psRegionSet(0,0,0,0), 10); + ok(trans3 == NULL, "psPlaneTransformCombine() returned NULL with NULL trans2 input"); + psFree(trans1); + psFree(trans3); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // XXX: Clean this, put it elsewhere + #define TST05_X_MIN 0.0 + #define TST05_X_MAX 10.0 + #define TST05_Y_MIN 0.0 + #define TST05_Y_MAX 10.0 + #define TST05_NUM_X 5.0 + #define TST05_NUM_Y 5.0 + #define TST05_X_POLY_ORDER 3 + #define TST05_Y_POLY_ORDER 3 + #define TST05_NUM_DATA (TST05_NUM_X * TST05_NUM_Y) + #define TST05_IGNORE 1 + #define TST05_VERBOSE 0 + + // Calling psPlaneTransformFit with NULL trans + // Should generate error and return NULL + // XXX: We do not test error generation + { + psArray *src = psArrayAlloc((int) TST05_NUM_DATA); + psArray *dst = psArrayAlloc((int) TST05_NUM_DATA); + psMemId id = psMemGetId(); + ok(!psPlaneTransformFit(NULL, src, dst, 100, 100.0), "psPlaneTransformFit() returned FALSE with NULL trans"); + psFree(src); + psFree(dst); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Calling psPlaneTransformFit with NULL src psArray + // Should generate error and return NULL + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psArray *dst = psArrayAlloc((int) TST05_NUM_DATA); + ok(!psPlaneTransformFit(trans, NULL, dst, 100, 100.0), "psPlaneTransformFit() returned FALSE with NULL src psArray"); + psFree(trans); + psFree(dst); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Calling psPlaneTransformFit with NULL dst psArray + // Should generate error and return NULL + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psArray *src = psArrayAlloc((int) TST05_NUM_DATA); + ok(!psPlaneTransformFit(trans, src, NULL, 100, 100.0), "psPlaneTransformFit() returned FALSE with NULL dst psArray"); + psFree(trans); + psFree(src); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psPlaneTransformFit() + // XXX: This is only a rudimentary test of the psPlaneTransformFit() function. + // It tests some simple linear transformations. + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psPlaneTransform *transInit = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psArray *src = psArrayAlloc((int) TST05_NUM_DATA); + psArray *dst = psArrayAlloc((int) TST05_NUM_DATA); + bool rc; + + // We set an arbitrary non-linear transformation. + for (psS32 x = 0 ; x < TST05_X_POLY_ORDER+1 ; x++) + { + for (psS32 y = 0 ; y < TST05_Y_POLY_ORDER+1 ; y++) { + transInit->x->coeff[x][y] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + transInit->y->coeff[x][y] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + } + } + if (TST05_VERBOSE) + { + PS_POLY_PRINT_2D(transInit->x); + PS_POLY_PRINT_2D(transInit->y); + } + + // We generate a grid of input data points in the x1,y1 plane, calculate the + // corresponding values in the transformed plane, and set these to + // the src and dst psVectors. + psS32 i = 0; + for (psF32 x = TST05_X_MIN ; x < TST05_X_MAX ; x+= (TST05_X_MAX-TST05_X_MIN)/TST05_NUM_X) + { + for (psF32 y = TST05_Y_MIN ; y < TST05_Y_MAX ; y+= (TST05_Y_MAX-TST05_Y_MIN)/TST05_NUM_Y) { + if (i == src->n) { + if (src->n == src->nalloc) { + src = psArrayRealloc(src, src->n+1); + } + src->n++; + } + if (i == dst->n) { + if (dst->n == dst->nalloc) { + dst = psArrayRealloc(dst, dst->n+1); + } + dst->n++; + } + src->data[i] = (psPtr *) psPlaneAlloc(); + ((psPlane *) src->data[i])->x = x; + ((psPlane *) src->data[i])->y = y; + + dst->data[i] = psPlaneTransformApply(NULL, transInit, ((psPlane *) src->data[i])); + i++; + } + } + + // Call psPlaneTransformFit with above data arrays + rc = psPlaneTransformFit(trans, src, dst, 100, 100.0); + ok(rc, "psPlaneTransformFit() returned TRUE"); + skip_start(!rc, 1, "Skipping tests because psPlaneTransformFit() returned FALSE"); + if (TST05_VERBOSE) + { + PS_POLY_PRINT_2D(trans->x); + PS_POLY_PRINT_2D(trans->y); + } + + // For the initial grid of input points, we transform them to output points with + // the derived transformation, and verify that they are within 10%. + bool errorFlag = false; + for (psS32 i = TST05_IGNORE ; i < src->n-TST05_IGNORE ; i++) + { + psPlane *inData = (psPlane *) src->data[i]; + psPlane *outData = (psPlane *) dst->data[i]; + psPlane *outDataDeriv = psPlaneTransformApply(NULL, trans, inData); + if (!PS_PERCENT_COMPARE(outDataDeriv->x, outData->x, 0.20) || + !PS_PERCENT_COMPARE(outDataDeriv->y, outData->y, 0.20)) { + diag("TEST ERROR: the derived output coords (%d) were (%.2f, %.2f) should have been (%.2f, %.2f).\n", + i, outDataDeriv->x, outDataDeriv->y, outData->x, outData->y); + errorFlag = true; + } else if (TST05_VERBOSE) { + diag("GOOD: the derived output coords (%d) were (%.2f, %.2f) should have been (%.2f, %.2f).\n", + i, outDataDeriv->x, outDataDeriv->y, outData->x, outData->y); + } + psFree(outDataDeriv); + } + ok(!errorFlag, "The derived transformation was correct"); + skip_end(); + psFree(transInit); + psFree(trans); + psFree(src); + psFree(dst); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + + // psPlaneTransformInvert() + // Calling psPlaneTransformInvert with NULL trans + // Should generate error and return NULL + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psRegion myRegion = psRegionSet(1.0, 5.0, 1.0, 5.0); + psPlaneTransform *transInverse = psPlaneTransformInvert(NULL, NULL, myRegion, 10); + ok(transInverse == NULL, "psPlaneTransformInvert() returned NULL with NULL trans"); + psFree(transInverse); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psPlaneTransformInvert() + // Calling psPlaneTransformInvert with zero nSamples + // Should generate error and return NULL + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(1, 1); + psRegion myRegion = psRegionSet(1.0, 5.0, 1.0, 5.0); + psPlaneTransform *transInverse = psPlaneTransformInvert(NULL, trans, myRegion, 0); + ok(transInverse == NULL, "psPlaneTransformInvert() returned NULL with zero nSamples"); + psFree(trans); + psFree(transInverse); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + #define NUM_TRANSFORMS 100 + // psPlaneTransformInvert() + // This is only a rudimentary test of the psPlaneTransformInvert() function. + // It tests: Several random linear transformations. + // XXX: Must extensively test non-linear transformations. + { + psMemId id = psMemGetId(); + bool errorFlag = false; + psPlaneTransform *trans = psPlaneTransformAlloc(1, 1); + psPlaneTransform *transInverse = NULL; + psRegion myRegion = psRegionSet(1.0, 5.0, 1.0, 5.0); + + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[0][1] = 1.0; + trans->x->coeff[1][0] = 2.0; + trans->x->coeff[1][1] = 3.0; + trans->y->coeff[0][0] = 4.0; + trans->y->coeff[0][1] = 5.0; + trans->y->coeff[1][0] = 6.0; + trans->y->coeff[1][1] = 7.0; + + // We calling psPlaneTransformInvert with acceptable linear transformations + for (psS32 n = 0 ; n < NUM_TRANSFORMS ; n++) + { + if (n == 0) { + // I ensure that we test the identity transformation since this was + // giving us probs before. + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[0][1] = 0.0; + trans->x->coeff[1][0] = 1.0; + trans->x->coeff[1][1] = 0.0; + trans->y->coeff[0][0] = 0.0; + trans->y->coeff[0][1] = 1.0; + trans->y->coeff[1][0] = 0.0; + trans->y->coeff[1][1] = 0.0; + } else { + // We create a random linear transformation and hope it is invertible. + trans->x->coeff[0][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[0][1] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[1][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[1][1] = 0.0; + trans->y->coeff[0][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[0][1] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[1][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[1][1] = 0.0; + } + + transInverse = psPlaneTransformInvert(NULL, trans, myRegion, 10); + if (transInverse == NULL) { + diag("TEST ERROR: psPlaneTransformInvert() returned a NULL psPlaneTransform.\n"); + errorFlag = true; + } else { + // Transform the "in" coords to "mid" with psPlaneTransform "trans", then + // transform "mid" to "out" with psPlaneTransform "transInverse". + // XXX: Must loop on a few data points. + psPlane *in = psPlaneAlloc(); + in->x = 2.0; + in->y = 3.0; + psPlane *mid = psPlaneTransformApply(NULL, trans, in); + psPlane *out = psPlaneTransformApply(NULL, transInverse, mid); + + if (((fabs(in->x - out->x) > FLT_EPSILON)) || + ((fabs(in->y - out->y) > FLT_EPSILON)) || + isnan(out->x) || + isnan(out->y)) { + diag("TEST ERROR: in coords were (%f, %f), out coords were (%f, %f).\n", + in->x, in->y, out->x, out->y); + errorFlag = true; + } + psFree(in); + psFree(mid); + psFree(out); + } + psFree(transInverse); + } + psFree(trans); + ok(!errorFlag, "psPlaneTransformInvert() successful on several transforms"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psPlaneTransformDeriv() + // Ensure psPlaneTransformDeriv() returns NULL for NULL input plane + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + // Following should generate error message + // XXX: un-NULL the first parameter since we test that above + // XXX: We do not test error generation + { + psMemId id = psMemGetId(); + psPlaneTransform *trans = psPlaneTransformAlloc(1, 3); + psPlane *deriv = psPlaneTransformDeriv(NULL, trans, NULL); + ok(deriv == NULL, "psPlaneTransformDeriv(NULL, trans, NULL) returned NULL"); + psFree(trans); + psFree(deriv); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psPlaneTransformDeriv() + // We test on a very simple transformation. + { + psMemId id = psMemGetId(); + psPlane *coord = psPlaneAlloc(); + psPlane *deriv = NULL; + psPlaneTransform *trans = NULL; + coord->x = 3.0; + coord->y = 1.0; + trans = psPlaneTransformAlloc(1, 3); + //Set Polynomials. f(x) = x, f(y) = 0.5*y^2 --> f'(x) = 1, f'(y) = y + //So for 1,1 -> f'(1) = 1, f'(1) = 1 + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[1][0] = 1.0; + trans->y->coeff[0][0] = 0.0; + trans->y->coeff[0][1] = 0.0; + trans->y->coeff[0][2] = 0.5; + + deriv = psPlaneTransformDeriv(NULL, trans, coord); + ok(deriv->x == 1.0 && deriv->y == 1.0, "psPlaneTransformDeriv() returned the correct values"); + psFree(trans); + psFree(deriv); + psFree(coord); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + /* HERE + */ +} + Index: /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_corrections.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_corrections.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_corrections.c (revision 12167) @@ -0,0 +1,564 @@ +/** + * C Implementation: tap_psEarthOrientation_corrections + * + * Description: Tests for p_psEOCInit, p_psEOCFinalize, psAberration, + * psGravityDeflection, psEOC_PrecessionCorr, + * psEOC_PolarTideCorr, psEOC_NutationCorr, + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +static void testEOCInit(void); +static void testAberration(void); +static void testGravDef(void); +static void testEOC_Corrs(void); + +#define MJD_1900 15021.0 // Modified Julian Day 1/1/1900 00:00:00 +#define MJD_2100 88069.0 // Modified Julian Day 1/1/2100 00:00:00 + +int main(void) +{ + plan_tests(8); + + diag("Tests for psEarthOrientation Correction Functions"); + + // Initialize library internal structures + psLibInit("pslib.config"); + + testEOCInit(); + testAberration(); + testGravDef(); + testEOC_Corrs(); + // testSphereOffsets(); + + // Cleanup library + psLibFinalize(); + + done(); +} + +void testEOCInit(void) +{ + diag(" >>>Test 1: p_psEOCInit "); + //Test for psEarthPoleAlloc + //Return properly allocated psEarthPole + /* { + skip_start( ep == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ep = psEarthPoleAlloc(); + ok( ep != NULL, + "psEarthPoleAlloc: return properly allocated psEarthPole."); + psFree(ep); + ep = NULL; + } + */ + + + //Check for Memory leaks + { + checkMem(); + } + +} + +void testAberration(void) +{ + diag(" >>>Test 2: psAberration "); + psSphere *apparent = NULL; + psSphere *empty = NULL; + psCube *actualCube = psCubeAlloc(); + //values from After gravity deflection// + actualCube->x = -0.35961949760293604; + actualCube->y = 0.5555613950298085; + actualCube->z = 0.7496835020836093; + psSphere *actual = psCubeToSphere(actualCube); + psCube *cubeDir = psCubeAlloc(); + cubeDir->x = 5148.713262821658; + cubeDir->y = -26945.04752348012; + cubeDir->z = -11682.787302030947; + cubeDir->x += -357.6031690489248; + cubeDir->y += 248.46429758174693; + cubeDir->z += 0.09694774143797581; + psSphere *direction = psCubeToSphere(cubeDir); + double speed = sqrt(cubeDir->x*cubeDir->x + cubeDir->y*cubeDir->y + cubeDir->z*cubeDir->z); + double c = 299792458.0; // Speed of light in vacuum (src:NIST) m/s + speed /= c; + + //Tests for psAberration + //Return NULL for NULL actual sphere input + { + empty = psAberration(apparent, NULL, direction, speed); + ok( empty == NULL, + "psAberration: return NULL for NULL actual sphere input."); + } + //Return NULL for NULL direction sphere input + { + empty = psAberration(apparent, actual, NULL, speed); + ok( empty == NULL, + "psAberration: return NULL for NULL direction sphere input."); + } + //Return NULL for speed = 0.0 + { + empty = psAberration(apparent, actual, direction, 0.0); + ok( empty == NULL, + "psAberration: return NULL for zero speed input."); + } + //Return NULL for speed > 1.0 + { + empty = psAberration(apparent, actual, direction, 1.1); + ok( empty == NULL, + "psAberration: return NULL for impossible speed input (> c)."); + } + + //Return correct values for valid inputs + { + double x, y, z; + x = -0.35963388069046304; + y = 0.5555192509816625; + z = 0.7497078321908413; + apparent = psAberration(apparent, actual, direction, speed); + skip_start( apparent == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + psCube *outCube = psSphereToCube(apparent); + ok_double_tol( outCube->x, x, 0.001, + "psAberration: return correct sphere for valid inputs."); + ok_double_tol( outCube->y, y, 0.001, + "psAberration: return correct sphere for valid inputs."); + ok_double_tol( outCube->z, z, 0.001, + "psAberration: return correct sphere for valid inputs."); + psFree(outCube); + skip_end(); + } + + //Check for Memory leaks + { + psFree(actualCube); + psFree(cubeDir); + psFree(apparent); + psFree(actual); + psFree(direction); + checkMem(); + } + +} + +void testGravDef(void) +{ + diag(" >>>Test 3: psGravityDeflection "); + //Test for psGravityDeflection + //Return properly allocated psEarthPole + /* + psSphere *apparent = NULL; + psSphere *empty = NULL; + psCube *actualCube = psCubeAlloc(); + actualCube->x = -0.3596195125758298; + actualCube->y = 0.5555613903455866; + actualCube->z = 0.7496834983724809; + psSphere *actual = psCubeToSphere(actualCube); + psCube *sunCube = psCubeAlloc(); + sunCube->x = 1.467797790127511e11; + sunCube->y = 2.5880956908748722e10; + sunCube->z = 1.1220046291457653e10; + double sunLength = sqrt(sunCube->x*sunCube->x + sunCube->y*sunCube->y + sunCube->z*sunCube->z); + sunCube->x /= sunLength; + sunCube->y /= sunLength; + sunCube->z /= sunLength; + if (VERBOSE) { + printf("sunCube = x,y,z = %.13g, %.13g, %.13g\n", + sunCube->x, sunCube->y, sunCube->z); + } + psSphere *sun = psCubeToSphere(sunCube); + if (VERBOSE) { + printf("sunSphere = r, d = %.13g, %.13g\n", sun->r, sun->d); + } + psCube *outCube = psCubeAlloc(); + + empty = psGravityDeflection(apparent, empty, sun); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psGravityDeflection Failed to return NULL for NULL actual input sphere.\n"); + return 1; + } + empty = psGravityDeflection(apparent, actual, empty); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psGravityDeflection Failed to return NULL for NULL sun input sphere.\n"); + return 2; + } + + apparent = psGravityDeflection(NULL, actual, sun); + // apparent->r *= -1.0; + // apparent->d *= -1.0; + psSphere *result2; + // psSphere *result2 = psSphereSetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + // psSphere *result = psSphereSetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + // psSphere *result = psSphereGetOffset(apparent, actual, PS_SPHERICAL, PS_RADIAN); + if (VERBOSE) { + printf(" -- actualCube = x,y,z = %.13g, %.13g, %.13g -- \n", + actualCube->x, actualCube->y, actualCube->z); + } + // psCube *outCube = psSphereToCube(result); + // printf(" -- resultCube = x,y,z = %.13g, %.13g, %.13g -- \n", + // outCube->x, outCube->y, outCube->z); + psCube *outCube2 = psSphereToCube(apparent); + if (VERBOSE) { + printf(" -- resultCube2= x,y,z = %.13g, %.13g, %.13g -- \n", + outCube2->x, outCube2->y, outCube2->z); + } + double x, y, z; + x = -0.35961949760293604; + y = 0.5555613950298085; + z = 0.7496835020836093; + + if (VERBOSE) { + printf(" -- expectCube = x,y,z = %.13g, %.13g, %.13g -- \n\n", x, y, z); + + // if ( fabs(x - outCube->x) > DBL_EPSILON || fabs(y - outCube->y) > DBL_EPSILON || + // fabs(z - outCube->z) > DBL_EPSILON ) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // "psGravityDeflection returned incorrect values.\n"); + printf("expect-actual= x,y,z = %.13g, %.13g, %.13g \n", + (x - actualCube->x), (y - actualCube->y), (z - actualCube->z) ); + printf("expect-result= x,y,z = %.13g, %.13g, %.13g \n", + (x - outCube2->x), (y - outCube2->y), (z - outCube2->z) ); + printf("result-actual= x,y,z = %.13g, %.13g, %.13g \n", + (outCube2->x - actualCube->x), (outCube2->y - actualCube->y), + (outCube2->z - actualCube->z) ); + } + // return 1; + // } + // psFree(result2); + outCube2->x = x; + outCube2->y = y; + outCube2->z = z; + result2 = psCubeToSphere(outCube2); + // psFree(result); + psSphere *result = psSphereGetOffset(actual, result2, PS_SPHERICAL, PS_RADIAN); + psFree(result2); + result2 = psSphereGetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + if (VERBOSE) { + printf("The apparent output sphere = r,d = %.13g, %.13g\n", result2->r, result2->d); + printf("The expected output sphere = r,d = %.13g, %.13g\n\n", result->r, result->d); + } + psFree(result2); + + psFree(outCube); + psFree(outCube2); + psFree(sunCube); + psFree(actualCube); + psFree(result); + psFree(actual); + psFree(apparent); + psFree(sun); + + + + { + skip_start( ep == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ep = psEarthPoleAlloc(); + ok( ep != NULL, + "psEarthPoleAlloc: return properly allocated psEarthPole."); + psFree(ep); + ep = NULL; + } + */ + + + //Check for Memory leaks + { + checkMem(); + } + +} + +void testEOC_Corrs(void) +{ + diag(" >>>Test 4: psEOC Correction Functions"); + //Tests for psEOC_PrecessionCorr + /* + psTime *empty = NULL; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = timesec; + time2->nsec = 0; + time2->leapsecond = false; + // time2 = psTimeConvert(time2, PS_TIME_TAI); + + //Tests for Precession Correction function// + //Return NULL for NULL time input + psEarthPole *pcorr = NULL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + pcorr = psEOC_PrecessionCorr(empty, PS_IERS_A); + if (pcorr != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionCorr failed to return NULL for NULL time input.\n"); + return 5; + } + + //Return NULL for Invalid IERS table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + pcorr = psEOC_PrecessionCorr(time2, 3); + if (pcorr != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionCorr failed to return NULL for incorrect IERS table.\n"); + return 6; + } + psFree(pcorr); + + //Check values from IERS table A + pcorr = psEOC_PrecessionCorr(time2, PS_IERS_A); + if ( pcorr == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PrecessionCorr returned NULL for valid inputs.\n"); + return 7; + } else { + if (VERBOSE) { + printf("\nPrecessionCorr output (IERSA) = x,y,s = %.13g, %.13g, %.13g\n", + pcorr->x, pcorr->y, pcorr->s); + } + } + psFree(pcorr); + + //Check values from IERS table B + pcorr = psEOC_PrecessionCorr(time2, PS_IERS_B); + if ( pcorr == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PrecessionCorr returned NULL for valid inputs.\n"); + return 9; + } else { + double xx, yy, ss; + xx = 0.06295703125; + yy = -0.0287618408203125; + ss = 0.0; + xx = SEC_TO_RAD(xx) * 1e-3; + yy = SEC_TO_RAD(yy) * 1e-3; + // if ( fabs(pcorr->x - xx) > DBL_EPSILON || fabs(pcorr->y - yy) > DBL_EPSILON + // || fabs(pcorr->s - ss) > DBL_EPSILON) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // " psEOC_PrecessionCorr return incorrect values.\n"); + if (VERBOSE) { + printf("PrecessionCorr output (IERSB) = x,y,s = %.13g, %.13g, %.13g\n", + pcorr->x, pcorr->y, pcorr->s); + printf("Expected output = x,y,s = %.13g, %.13g, %.13g\n", xx, yy, ss); + printf(" A difference of: %.13g, %.13g, %.13g\n\n", + (pcorr->x - xx), (pcorr->y - yy), (pcorr->s - ss) ); + } + // return 10; + // } + } + //precess is the *actual* output from PrecessionModel + PrecessionCorr + psEarthPole *precess = psEOC_PrecessionModel(time2); + precess->x += pcorr->x; + precess->y += pcorr->y; + double xCorr, yCorr; + xCorr = 3.05224300720406e-10; + yCorr = -1.39441339235822e-10; + //pcorr is the *expected* output from PrecessionModel// + pcorr->x = 2.857175590089105e-4; + pcorr->y = 2.3968739377734732e-5; + pcorr->s = -1.3970066457904322e-8; + pcorr->x += xCorr; + pcorr->y += yCorr; + psSphereRot *precessNutInv = psSphereRot_CEOtoGCRS(precess); + psSphereRot *precessNut = psSphereRotConjugate(NULL, precessNutInv); + double q0, q1, q2; + q0 = -1.1984522406756289e-5; + q1 = 1.4285893358610674e-4; + q2 = 1.2191193518914336e-10; + psSphereRot *pni = psSphereRot_CEOtoGCRS(pcorr); + if (fabs(pni->q0-q0) > FLT_EPSILON || fabs(pni->q1-q1) > FLT_EPSILON || + fabs(pni->q2-q2) > FLT_EPSILON ) { + printf("\n Error at CEOtoGCRS, output psSphereRot doesn't match expected.\n"); + } + // printf(" Output from CEOtoGCRS only = %.13g,%.13g,%.13g,%.13g\n", + // pni->q0, pni->q1, pni->q2, pni->q3); + if (VERBOSE) { + printf(" Expected sphere rotation = %.13g, %.13g, %.13g\n", q0,q1,q2); + printf(" Result sphere rotation = %.13g, %.13g, %.13g\n", + precessNutInv->q0, precessNutInv->q1, precessNutInv->q2); + printf(" Difference = %.13g, %.13g, %.13g\n\n", + precessNutInv->q0-q0, precessNutInv->q1-q1, precessNutInv->q2-q2); + } + psCube *objC = psCubeAlloc(); + // objC->x = -3.5963388069046304; + // objC->y = 0.5555192509816625; + // objC->z = 0.7497078321908413; + // objSetup(); + + //This is the sphere rotation for the *expected* precession output// + psSphereRot *pn = psSphereRotConjugate(NULL, pni); + + // psSphere *sphere = psSphereAlloc(); + // *sphere = *obj; + // psFree(obj); + + //create a psSphere for (from) the start position given in eoc_testing// + objC->x = -0.35963388069046304; + objC->y = 0.5555192509816625; + objC->z = 0.7497078321908413; + psSphere *sphere = psCubeToSphere(objC); + + psSphere *expect = psSphereRotApply(NULL, pn, sphere); + //expected results below - stored in: sphere // + double x,y,z; + x = -0.3598480726985338; + y = 0.5555012823608123; + z = 0.7496183628158023; + if (VERBOSE) { + printf("\n<x, objC->y, objC->z); + //printf(" Difference = %.13g, %.13g, %.13g\n", objC->x-x, objC->y-y, objC->z-z); + // x = objC->x; + // y = objC->y; + // z = objC->z; + psSphere *result = psSphereRotApply(NULL, precessNut, sphere); + psFree(objC); + objC = psSphereToCube(result); + double xx = greatCircle(result, expect); + if (VERBOSE) { + printf("<x, objC->y, objC->z); + printf(" Difference = %.13g, %.13g, %.13g\n\n", + objC->x-x, objC->y-y, objC->z-z); + printf("GREAT CIRCLE DIFFERENCE = %.13g \n", xx); + } + + psFree(precess); + psFree(precessNut); + psFree(precessNutInv); + psFree(expect); + psFree(objC); + + psFree(sphere); + psFree(result); + psFree(pn); + psFree(pni); + psFree(pcorr); + psFree(time2); + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + */ + + //Tests for psEOC_PolarTideCorr + /* + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = timesec; + in->nsec = 0; + in->leapsecond = false; + psTime *empty = NULL; + psEarthPole *eop = NULL; + + //Return NULL for NULL input time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + eop = psEOC_PolarTideCorr(empty); + if (eop != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PolarTideCorr failed to return NULL for NULL input time.\n"); + return 1; + } + + eop = psEOC_PolarTideCorr(in); + if (eop == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PolarTideCorr returned NULL for valid input time.\n"); + return 2; + } else { + if (VERBOSE) { + printf("\nPolarTideCorr output = x,y,s = %.13g, %.13g, %.13g\n", + eop->x, eop->y, eop->s); + } + } + + psFree(in); + psFree(eop); + + */ + + + + //Tests for psEOC_NutationCorr + /* + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = timesec; + in->nsec = 0; + in->leapsecond = false; + psTime *empty = NULL; + psEarthPole *nute = NULL; + + //Return NULL for NULL input time. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + nute = psEOC_NutationCorr(empty); + if (nute != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_NutationCorr failed to return NULL for NULL input time.\n"); + return 1; + } + //Return NULL for UT1 time input + *//* psTime *UT1time = psTimeAlloc(PS_TIME_UT1); + nute = psEOC_NutationCorr(UT1time); + if (nute != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_NutationCorr failed to return NULL for UT1 input time.\n"); + return 2; + } + psFree(UT1time); + *//* + //Check return values from valid nutation time input + nute = psEOC_NutationCorr(in); + if ( nute == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_NutationCorr returned NULL for valid input.\n"); + return 3; + } else { + if (VERBOSE) { + printf("Nutation Correction output = x,y,s = %.13g, %.13g, %.13g\n\n", + nute->x, nute->y, nute->s); + } + } + psFree(nute); + psFree(in); + + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + */ + //Return properly allocated psEarthPole + /* + + + { + skip_start( ep == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ep = psEarthPoleAlloc(); + ok( ep != NULL, + "psEarthPoleAlloc: return properly allocated psEarthPole."); + psFree(ep); + ep = NULL; + } + */ + + + //Check for Memory leaks + { + checkMem(); + } + +} + + Index: /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_motion.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_motion.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psEarthOrientation_motion.c (revision 12167) @@ -0,0 +1,555 @@ +/** + * C Implementation: tap_psEarthOrientation_motion + * + * Description: Tests for psEarthPoleAlloc, psEOC_PrecessionModel, psSpherePrecess + * psSphereRot_CEOtoGCRS, psSphereRot_TEOtoCEO, + * psEOC_GetPolarMotion, psSphereRot_ITRStoTEO + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +static void testPrecessionModel(void); +static void testPolarMotion(void); +static void testSphereRots(void); +static void testSpherePrecess(void); + +#define MJD_1900 15021.0 // Modified Julian Day 1/1/1900 00:00:00 +#define MJD_2100 88069.0 // Modified Julian Day 1/1/2100 00:00:00 + +int main(void) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(48); + + diag("Tests for psEarthOrientation Motion Functions"); + + // Initialize library internal structures + psLibInit("pslib.config"); + + testPrecessionModel(); + testPolarMotion(); + testSphereRots(); + testSpherePrecess(); + + // Cleanup library + psLibFinalize(); + + done(); +} + +void testPrecessionModel(void) +{ + diag(" >>>Test 1: psEOC_PrecessionModel"); + + psEarthPole *ep = NULL; + psTime *testTime = NULL; + + //Test for psEarthPoleAlloc + //Return properly allocated psEarthPole + { + ep = psEarthPoleAlloc(); + ok( ep != NULL, + "psEarthPoleAlloc: return properly allocated psEarthPole."); + psFree(ep); + ep = NULL; + } + //Tests for psEOC_PrecessionModel + //Return NULL for NULL time input. + { + ep = psEOC_PrecessionModel(NULL); + ok( ep == NULL, + "psEOC_PrecessionModel: return NULL for NULL time input."); + } + //Return NULL for UT1 time input. + { + testTime = psTimeAlloc(PS_TIME_UT1); + ep = psEOC_PrecessionModel(testTime); + ok( ep == NULL, + "psEOC_PrecessionModel: return NULL for UT1 time input."); + } + //Return NULL for invalid time input. + { + psFree(testTime); + testTime = psTimeAlloc(PS_TIME_UTC); + testTime->nsec = 2e9; + ep = psEOC_PrecessionModel(testTime); + ok( ep == NULL, + "psEOC_PrecessionModel: return NULL for invalid time input."); + testTime->nsec = 0; + } + //Return NULL for failed eoc init - missing file + // printf("\n filename = '%s' \n", p_psGetConfigFileName()); + { + testTime->sec = 1049160600; + testTime->nsec = 0; + testTime->leapsecond = false; + skip_start(rename("../../etc/pslib.config", "../../etc/pslib_config.bak"), + 1, "Skipping 1 tests because file rename failed!"); + ep = psEOC_PrecessionModel(testTime); + ok( ep == NULL, + "psEOC_PrecessionModel: return NULL for failed eoc init."); + rename("../../etc/pslib_config.bak", "../../etc/pslib.config"); + skip_end(); + } + //Return valid EarthPole for valid time input + { + double x, y, s; + x = 2.857175590089105e-4; + y = 2.3968739377734732e-5; + s = -1.3970066457904322e-8; + ep = psEOC_PrecessionModel(testTime); + skip_start( ep == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ok_double_tol(ep->x, x, 0.1, + "psEOC_PrecessionModel: return valid EarthPole for valid inputs (x)."); + ok_double_tol(ep->y, y, 0.1, + "psEOC_PrecessionModel: return valid EarthPole for valid inputs (y)."); + ok_double_tol(ep->s, s, 0.1, + "psEOC_PrecessionModel: return valid EarthPole for valid inputs (s)."); + skip_end(); + } + + + /* + //Tests for psMemCheckSphereRot + //Make sure psMemCheckSphereRot works correctly - return false + { + int j = 2; + ok( !psMemCheckSphereRot(&j), + "psMemCheckSphereRot: return false for non-SphereRot input."); + skip_start( s1 == NULL, 1, + "Skipping 1 tests because psSphereRot is NULL!"); + skip_end(); + } + */ + //Check for Memory leaks + { + psFree(testTime); + psFree(ep); + checkMem(); + } + +} + +void testPolarMotion(void) +{ + diag(" >>>Test 2: psEOC_GetPolarMotion "); + + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = 1049160600; + in->nsec = 0; + in->leapsecond = false; + psEarthPole *polarMotion = NULL; + + //Tests for psEOC_GetPolarMotion + //Return NULL for NULL time input. + { + polarMotion = psEOC_GetPolarMotion(NULL, PS_IERS_B); + ok( polarMotion == NULL, + "psEOC_GetPolarMotion: return NULL for NULL time input."); + } + //Return NULL for invalid IERS table input + { + polarMotion = psEOC_GetPolarMotion(NULL, PS_IERS_B+1); + ok( polarMotion == NULL, + "psEOC_GetPolarMotion: return NULL for invalid IERS table input."); + } + //Return NULL for invalid time input. + { + in->nsec = 2e9; + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_B); + ok( polarMotion == NULL, + "psEOC_GetPolarMotion: return NULL for invalid time input."); + in->nsec = 0; + } + //Return NULL for failed eoc init - missing file + { + p_psEOCFinalize(); + skip_start(rename("../../etc/pslib.config", "../../etc/pslib_config.bak"), + 1, "Skipping 1 tests because file rename failed!"); + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_B); + ok( polarMotion == NULL, + "psEOC_GetPolarMotion: return NULL for failed eoc init."); + rename("../../etc/pslib_config.bak", "../../etc/pslib.config"); + skip_end(); + } + //Return valid EarthPole for valid time input - IERS B + { + double x, y, s; + x = -6.454389659777e-07; + y = 2.112606414597e-06; + s = 0.0; + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_B); + skip_start( polarMotion == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ok_double_tol(polarMotion->x, x, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(x) - IERS B."); + ok_double_tol(polarMotion->y, y, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(y) - IERS B."); + ok_double_tol(polarMotion->s, s, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(s) - IERS B."); + skip_end(); + psFree(polarMotion); + } + //Return valid EarthPole for valid time input - IERS A + { + double x, y, s; + x = -6.45381397904e-07; + y = 2.112819726698e-06; + s = 0.0; + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_A); + skip_start( polarMotion == NULL, 3, + "Skipping 3 tests because psEarthPole is NULL!"); + ok_double_tol(polarMotion->x, x, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(x) - IERS A."); + ok_double_tol(polarMotion->y, y, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(y) - IERS A."); + ok_double_tol(polarMotion->s, s, 0.1, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs " + "(s) - IERS A."); + skip_end(); + psFree(polarMotion); + } + //Return valid EarthPole for valid time input - IERS A + { + psTime *firstTime = psTimeFromMJD(41684.50); + polarMotion = psEOC_GetPolarMotion(firstTime, PS_IERS_B); + ok( polarMotion != NULL, + "psEOC_GetPolarMotion: return valid EarthPole for valid inputs."); + psFree(firstTime); + } + + + //Check for Memory leaks + { + psFree(in); + psFree(polarMotion); + checkMem(); + } + +} + +static psSphere *objSetup(void) +{ + psSphere *obj = NULL; + psCube *tempCube = psCubeAlloc(); + tempCube->x = -0.3598480726985338; + tempCube->y = 0.5555012823608123; + tempCube->z = 0.7496183628158023; + obj = psCubeToSphere(tempCube); + psFree(tempCube); + return obj; +} + +void testSphereRots(void) +{ + diag(" >>>Test 3: psSphereRot Functions"); + psSphereRot *out = NULL; + psEarthPole *in = NULL; + double q0,q1,q2,q3; + q0 = -1.1984522406756289e-5; + q1 = 1.4285893358610674e-4; + q2 = 1.2191193518914336e-10; + q3 = -0.9999999897238481; + + //Tests for psSphereRot_CEOtoGCRS + //Return NULL for NULL earthPole input + { + out = psSphereRot_CEOtoGCRS(in); + ok( out == NULL, + "psSphereRot_CEOtoGCRS: return NULL for NULL earthPole input."); + in = psEarthPoleAlloc(); + } + in->x = 2.857175590089105e-4; + in->y = 2.3968739377734732e-5; + in->s = -1.3970066457904322e-8; + //Return correct psSphereRot for valid input + { + out = psSphereRot_CEOtoGCRS(in); + skip_start( out == NULL, 4, + "Skipping 4 tests because psSphereRot output is NULL!"); + ok_double_tol( out->q0, q0, 0.0001, + "psSphereRot_CEOtoGCRS: return correct psSphereRot for valid input (q0)."); + ok_double_tol( out->q1, q1, 0.0001, + "psSphereRot_CEOtoGCRS: return correct psSphereRot for valid input (q1)."); + ok_double_tol( out->q2, q2, 0.0001, + "psSphereRot_CEOtoGCRS: return correct psSphereRot for valid input (q2)."); + ok_double_tol( out->q3, -q3, 0.0001, + "psSphereRot_CEOtoGCRS: return correct psSphereRot for valid input (q3)."); + skip_end(); + } + + //Tests for psSphereRot_TEOtoCEO + psFree(out); + psTime *time = psTimeAlloc(PS_TIME_UT1); + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time->sec = 1049160600-1; + time->nsec = 657017200; + time->leapsecond = false; + psEarthPole *temp = psEarthPoleAlloc(); + temp->s = -2.0; + //Return NULL for NULL time input + { + out = psSphereRot_TEOtoCEO(NULL, NULL); + ok( out == NULL, + "psSphereRot_TEOtoCEO: return NULL for NULL time input."); + } + //Return NULL for invalid time input - large nsec, UTC time type + { + time2->nsec = 3e9; + out = psSphereRot_TEOtoCEO(time2, NULL); + ok( out == NULL, + "psSphereRot_TEOtoCEO: return NULL for invalid time input."); + } + //Return NULL for invalid time input - UT1 time type, large nsec + { + psFree(time2); + time2 = psTimeAlloc(PS_TIME_UT1); + time2->nsec = 1e9; + temp->s = 1.0; + out = psSphereRot_TEOtoCEO(time2, temp); + ok( out == NULL, + "psSphereRot_TEOtoCEO: return NULL for invalid time input."); + } + //Return NULL for invalid earthPole input + { + time2->nsec = 0; + psEarthPole *temp = psEarthPoleAlloc(); + temp->s = -2.0; + out = psSphereRot_TEOtoCEO(time2, temp); + ok( out == NULL, + "psSphereRot_TEOtoCEO: return NULL for invalid earthPole input."); + } + //Return correct psSphereRot for valid inputs + double x, y, z; + x = 0.01698625430807123; + y = -0.6616523084626379; + z = 0.7496183628158023; + { + psEarthPole *polarTideCorr = psEOC_PolarTideCorr(time); + out = psSphereRot_TEOtoCEO(time, polarTideCorr); + skip_start( out == NULL, 3, + "Skipping 3 tests because psSphereRot output is NULL!"); + psSphere *obj = objSetup(); + psSphereRot *earthRot = psSphereRotConjugate(NULL, out); + psSphere *result = psSphereRotApply(NULL, earthRot, obj); + psCube *cube = psSphereToCube(result); + ok_double_tol( cube->x, x, 0.0001, + "psSphereRot_TEOtoCEO: return NULL for NULL time input. (x)"); + ok_double_tol( cube->y, y, 0.0001, + "psSphereRot_TEOtoCEO: return NULL for NULL time input. (y)"); + ok_double_tol( cube->z, z, 0.0001, + "psSphereRot_TEOtoCEO: return NULL for NULL time input. (z)"); + psFree(earthRot); + psFree(result); + psFree(cube); + psFree(obj); + skip_end(); + psFree(polarTideCorr); + } + + //Tests for psSphereRot_ITRStoTEO + //Return NULL for NULL earthPole input + { + psFree(out); + out = psSphereRot_ITRStoTEO(NULL); + ok( out == NULL, + "psSphereRot_ITRStoTEO: return NULL for NULL earthPole input."); + in = psEarthPoleAlloc(); + } + //Return correct psSphereRot for valid input + { + q0 = -1.0567571848664005e-6; + q1 = 3.218036562931509e-7; + q2 = -3.3580195807204483e-12; + q3 = -0.9999999999993899; + in->x = SEC_TO_RAD(-0.13275353774074533); + in->y = SEC_TO_RAD(0.4359436319739848); + in->s = SEC_TO_RAD(-4.2376965863576153e-10); + out = psSphereRot_ITRStoTEO(in); + skip_start( out == NULL, 4, + "Skipping 4 tests because psSphereRot output is NULL!"); + ok_double_tol( out->q0, q0, 0.0001, + "psSphereRot_ITRStoTEO: return correct psSphereRot for valid input (q0)."); + ok_double_tol( out->q1, q1, 0.0001, + "psSphereRot_ITRStoTEO: return correct psSphereRot for valid input (q1)."); + ok_double_tol( out->q2, q2, 0.0001, + "psSphereRot_ITRStoTEO: return correct psSphereRot for valid input (q2)."); + ok_double_tol( out->q3, q3, 0.0001, + "psSphereRot_ITRStoTEO: return correct psSphereRot for valid input (q3)."); + skip_end(); + } + + //Check for Memory leaks + { + psFree(temp); + psFree(time2); + psFree(time); + psFree(out); + psFree(in); + checkMem(); + } +} + +#define SPHERE_PRECESS_TP1_R 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP1_D 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP1_EXPECT_R 6.238453 // 357.437 degrees +#define SPHERE_PRECESS_TP1_EXPECT_D -0.019426 // -1.113 degrees +#define SPHERE_PRECESS_TP2_R 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP2_D 1.570796 // 90.0 degrees +#define SPHERE_PRECESS_TP2_EXPECT_R 6.260828 // 358.719 degrees +#define SPHERE_PRECESS_TP2_EXPECT_D 1.551353 // 88.886 degrees +#define SPHERE_PRECESS_TP3_R 3.141593 // 180.0 degrees +#define SPHERE_PRECESS_TP3_D 0.523599 // 30.0 degrees +#define SPHERE_PRECESS_TP3_EXPECT_R 3.096616 // 177.423 degrees +#define SPHERE_PRECESS_TP3_EXPECT_D 0.543024 // 31.113 degrees +#define ERROR_TOL 0.0001 + +void testSpherePrecess(void) +{ + diag(" >>>Test 4: psSpherePrecess"); + psSphereRot *rot = NULL; + psTime *fromTime = NULL; + psTime *toTime = NULL; + psSphere* inputCoord = psSphereAlloc(); + psSphere* outputCoord = NULL; + + //Return NULL for NULL time inputs + { + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + ok( rot == NULL, + "psSpherePrecess: return NULL for NULL time inputs."); + } + //Return NULL for invalid mode input + { + fromTime = psTimeFromMJD(MJD_2100); + toTime = psTimeFromMJD(MJD_1900); + rot = psSpherePrecess(fromTime, toTime, -1); + ok( rot == NULL, + "psSpherePrecess: return NULL for invalid mode input."); + } + //Return correct psSphereRot for valid inputs, mode = ROUGH + { + inputCoord->r = SPHERE_PRECESS_TP1_R; + inputCoord->d = SPHERE_PRECESS_TP1_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) + outputCoord->r += 2.0 * M_PI; + skip_start( rot == NULL || outputCoord == NULL, 2, + "Skipping 2 tests because psSphereRot output is NULL!"); + ok_double_tol( outputCoord->r, SPHERE_PRECESS_TP1_EXPECT_R, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (r)"); + ok_double_tol( outputCoord->d, SPHERE_PRECESS_TP1_EXPECT_D, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (d)"); + skip_end(); + psFree(outputCoord); + psFree(rot); + } + //Return correct psSphereRot for valid inputs, mode = ROUGH + { + inputCoord->r = SPHERE_PRECESS_TP2_R; + inputCoord->d = SPHERE_PRECESS_TP2_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) + outputCoord->r += 2.0 * M_PI; + skip_start( rot == NULL || outputCoord == NULL, 2, + "Skipping 2 tests because psSphereRot output is NULL!"); + ok_double_tol( outputCoord->r, SPHERE_PRECESS_TP2_EXPECT_R, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (r)"); + ok_double_tol( outputCoord->d, SPHERE_PRECESS_TP2_EXPECT_D, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (d)"); + skip_end(); + psFree(outputCoord); + psFree(rot); + } + //Return correct psSphereRot for valid inputs, mode = ROUGH + { + inputCoord->r = SPHERE_PRECESS_TP3_R; + inputCoord->d = SPHERE_PRECESS_TP3_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) + outputCoord->r += 2.0 * M_PI; + skip_start( rot == NULL || outputCoord == NULL, 2, + "Skipping 2 tests because psSphereRot output is NULL!"); + ok_double_tol( outputCoord->r, SPHERE_PRECESS_TP3_EXPECT_R, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (r)"); + ok_double_tol( outputCoord->d, SPHERE_PRECESS_TP3_EXPECT_D, ERROR_TOL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_ROUGH mode. (d)"); + skip_end(); + psFree(outputCoord); + psFree(rot); + } + //Return correct psSphereRot for valid inputs, mode = COMPLETE_A + { + rot = psSpherePrecess(NULL, toTime, PS_PRECESS_COMPLETE_A); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + ok( outputCoord != NULL && rot != NULL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_COMPLETE_A mode."); + psFree(outputCoord); + psFree(rot); + } + //Return correct psSphereRot for valid inputs, mode = COMPLETE_B + { + rot = psSpherePrecess(NULL, toTime, PS_PRECESS_COMPLETE_B); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + ok( outputCoord != NULL && rot != NULL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_COMPLETE_B mode."); + psFree(outputCoord); + psFree(rot); + } + //Return correct psSphereRot for valid inputs, mode = IAU2000A + { + rot = psSpherePrecess(NULL, toTime, PS_PRECESS_IAU2000A); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + ok( outputCoord != NULL && rot != NULL, + "psSpherePrecess: return correct psSphereRot for valid" + " inputs and PS_PRECESS_IAU2000A mode."); + } + + //Check for Memory leaks + { + psFree(fromTime); + psFree(toTime); + psFree(outputCoord); + psFree(rot); + checkMem(); + } + +} + + Index: /branches/rel-1-1/psLib/test/astro/tap_psSphereOps_all.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psSphereOps_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psSphereOps_all.c (revision 12167) @@ -0,0 +1,498 @@ +/** + * C Implementation: tap_psSphereOps_all + * + * Description: Tests for psSphereRotAlloc, psMemCheckSphereRot, psSphereRotQuat, + * psSphereRotApply, psSphereRotCombine, psSphereRotConjugate, + * psSphereRotInvert, psSphereGetOffset, psSphereSetOffset, + * psSphereRotICRSToEcliptic, psSphereRotEclipticToICRS, + * psSphereRotICRSToGalactic, psSphereRotGalacticToICRS + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define DEG_INC 30.0 + +#define MJD_1900 15021.0 // Modified Julian Day 1/1/1900 00:00:00 +#define MJD_2000 51544.0 // Modified Julian Day 1/1/2000 00:00:00 +#define MJD_2100 88069.0 // Modified Julian Day 1/1/2100 00:00:00 + +#define ERROR_TOL 0.0001 + +#define ALPHA_P 4*M_PI/3 +#define DELTA_P M_PI/4 +#define PHI_P M_PI/3 + +static void testSphereRotCreate(void); +static void testSphereRotConvert(void); +static void testSphereOffsets(void); + +int main(void) +{ + plan_tests(57); + + diag("Tests for psSphereOps Functions"); + + testSphereRotCreate(); + testSphereRotConvert(); + testSphereOffsets(); + + done(); +} + +void testSphereRotCreate(void) +{ + diag(" >>>Test 1: psSphereRot Creation Functions"); + + // Allocate data structure + psSphereRot* myST = NULL; + myST = psSphereRotAlloc(ALPHA_P, DELTA_P, PHI_P); + double a0 = (ALPHA_P - PHI_P)/2.0; + double a1 = (ALPHA_P - PHI_P)/2.0; + double a2 = (ALPHA_P + PHI_P)/2.0; + double a3 = (ALPHA_P + PHI_P)/2.0; + //From Mathworld, this is another way to calculate the quaternions of a rotation + double q0 = sin(a0)*sin(DELTA_P/2); + double q1 = cos(a1)*sin(DELTA_P/2); + double q2 = sin(a2)*cos(DELTA_P/2); + double q3 = cos(a3)*cos(DELTA_P/2); + + //Tests for psSphereRotAlloc + //Return NULL for NAN input + { + psSphereRot *s1 = psSphereRotAlloc(ALPHA_P, NAN, PHI_P); + ok( s1 == NULL, + "psSphereRotAlloc: return NULL for NAN input."); + } + //Return valid psSphereRot (allocated) for valid inputs + { + ok( myST != NULL && psMemCheckSphereRot(myST), + "psSphereRotAlloc: return allocated SphereRot for valid inputs."); + ok_double(q0, myST->q0, + "psSphereRotAlloc: return correct q0 value."); + ok_double(q1, myST->q1, + "psSphereRotAlloc: return correct q1 value."); + ok_double(q2, myST->q2, + "psSphereRotAlloc: return correct q2 value."); + ok_double(q3, myST->q3, + "psSphereRotAlloc: return correct q3 value."); + } + //Tests for psMemCheckSphereRot + //Make sure psMemCheckSphereRot works correctly - return false + { + int j = 2; + ok( !psMemCheckSphereRot(&j), + "psMemCheckSphereRot: return false for non-SphereRot input."); + } + //Tests for psSphereRotQuat + //Return NULL for NAN input + { + psSphereRot *s1 = psSphereRotQuat(q0, q1, q2, NAN); + ok( s1 == NULL, + "psSphereRotQuat: return NULL for NAN input."); + } + //Return valid psSphereRot (allocated) for valid inputs + psFree(myST); + myST = NULL; + myST = psSphereRotQuat(q0*2.0, q1*2.0, q2*2.0, q3*2.0); + { + ok( myST != NULL && psMemCheckSphereRot(myST), + "psSphereRotQuat: return allocated SphereRot for valid inputs."); + ok_double(q0, myST->q0, + "psSphereRotQuat: return correct q0 value."); + ok_double(q1, myST->q1, + "psSphereRotQuat: return correct q1 value."); + ok_double(q2, myST->q2, + "psSphereRotQuat: return correct q2 value."); + ok_double(q3, myST->q3, + "psSphereRotQuat: return correct q3 value."); + } + + + //Check for Memory leaks + { + psFree(myST); + checkMem(); + } + +} + +void testSphereRotConvert(void) +{ + diag(" >>>Test 2: psSphereRot Conversion Functions"); + + // Allocate data structure + psSphereRot* myST = NULL; + psSphereRot* s1 = NULL; + psSphereRot *s2 = NULL; + myST = psSphereRotAlloc(ALPHA_P, DELTA_P, PHI_P); + psSphere *sphere = psSphereAlloc(); + sphere->r = 0.0; + sphere->d = 0.0; + psSphere *out = NULL; + psSphere *out2 = NULL; + psTime *pre1900 = psTimeFromMJD(MJD_1900 - 100.0); + psTime *mjd2k = psTimeFromMJD(MJD_2000); + psSphere* icrs = psSphereAlloc(); + psSphere* galactic = NULL; + icrs->r = DEG_TO_RAD(0.0); + icrs->d = DEG_TO_RAD(90.0); + + //Tests for psSphereRotCombine + //Return NULL for NULL sphere input + { + s1 = psSphereRotCombine(s1, myST, NULL); + ok( s1 == NULL, + "psSphereRotCombine: return NULL for NULL input."); + } + //Return NULL for NULL transform input + { + s1 = psSphereRotCombine(s1, NULL, myST); + ok( s1 == NULL, + "psSphereRotCombine: return NULL for NULL input."); + } + //Tests for psSphereRotApply + //Return NULL for NULL sphere input + { + out = psSphereRotApply(out, myST, NULL); + ok( out == NULL, + "psSphereRotApply: return NULL for NULL sphere input."); + } + //Return NULL for NULL transform input + { + out = psSphereRotApply(out, NULL, sphere); + ok( out == NULL, + "psSphereRotApply: return NULL for NULL transform input."); + } + + //Tests for psSphereRotConjugate + //Return NULL for NULL inputs + { + s1 = psSphereRotConjugate(s1, NULL); + ok( s1 == NULL, + "psSphereRotConjugate: return NULL SphereRot for NULL inputs."); + } + //Return correct conjugate for valid inputs + { + s1 = psSphereRotConjugate(s1, myST); + skip_start( s1 == NULL, 1, + "Skipping 1 tests because psSphereRot is NULL!"); + out = psSphereRotApply(out, myST, sphere); + skip_start( out == NULL || out->r == 0, 2, + "Skipping 1 tests because psSphereRotApply failed!"); + out2 = psSphereRotApply(out2, s1, out); + ok_double( out2->r, 0.0, + "psSphereRotConjugate: return correct SphereRot values."); + ok_double( out2->d, 0.0, + "psSphereRotConjugate: return correct SphereRot values."); + skip_end(); + psFree(s1); + psFree(out); + psFree(out2); + s1 = NULL; + out = NULL; + out2 = NULL; + skip_end(); + } + //Tests for psSphereRotInvert + //Return correct inversion for valid inputs + { + s1 = psSphereRotInvert(-PHI_P, -DELTA_P, -ALPHA_P); + ok_double(s1->q0, myST->q0, + "psSphereRotInvert: return correct q0 value."); + ok_double(s1->q1, myST->q1, + "psSphereRotInvert: return correct q1 value."); + ok_double(s1->q2, myST->q2, + "psSphereRotInvert: return correct q2 value."); + ok_double(s1->q3, myST->q3, + "psSphereRotInvert: return correct q3 value."); + psFree(s1); + s1 = NULL; + } + + //Tests for psSphereRotICRSToEcliptic + //Return NULL for NULL input + { + s1 = psSphereRotICRSToEcliptic(NULL); + ok( s1 == NULL, + "psSphereRotICRSToEcliptic: return NULL SphereRot for NULL inputs."); + } + //Return NULL for Pre-MJD_1900 Date + { + s1 = psSphereRotICRSToEcliptic(pre1900); + ok( s1 == NULL, + "psSphereRotICRSToEcliptic: return NULL SphereRot for pre-1900 MJD date."); + } + //Return correct SphereRot for MJD_2000 + { + s1 = psSphereRotICRSToEcliptic(mjd2k); + skip_start( s1 == NULL, 2, + "Skipping 2 tests because psSphereRot is NULL!"); + icrs->r = DEG_TO_RAD(0.0); + icrs->d = DEG_TO_RAD(90.0); + psSphere* ecliptic = psSphereRotApply(NULL, s1, icrs); + ok_double_tol(DEG_TO_RAD(90.0), ecliptic->r, 0.00001, + "psSphereRotICRSToEcliptic: return correct SphereRot for MJD_2000 date."); + ok_double_tol(DEG_TO_RAD(66.560719), ecliptic->d, 0.00001, + "psSphereRotICRSToEcliptic: return correct SphereRot for MJD_2000 date."); + psFree(ecliptic); + skip_end(); + psFree(s1); + s1 = NULL; + } + //Tests for psSphereRotEclipticToICRS + //Return NULL for NULL input + { + s1 = psSphereRotEclipticToICRS(NULL); + ok( s1 == NULL, + "psSphereRotEclipticToICRS: return NULL SphereRot for NULL inputs."); + } + //Return NULL for Pre-MJD_1900 Date + { + s1 = psSphereRotEclipticToICRS(pre1900); + ok( s1 == NULL, + "psSphereRotEclipticToICRS: return NULL SphereRot for pre-1900 MJD date."); + } + //Return correct SphereRot for MJD_2000 + { + s1 = psSphereRotEclipticToICRS(mjd2k); + skip_start( s1 == NULL, 2, + "Skipping 2 tests because psSphereRot is NULL!"); + psSphere* ecliptic = psSphereRotApply(NULL, s1, icrs); + s2 = psSphereRotICRSToEcliptic(mjd2k); + psSphere* fromEcliptic = psSphereRotApply(NULL, s2, ecliptic); + //XXX: Pretty sure the following can be 180 degrees OR 0 degrees. (= the poles) + ok_double_tol(DEG_TO_RAD(180.0), fromEcliptic->r, 0.00001, + "psSphereRotEclipticToICRS: return correct SphereRot for MJD_2000 date."); + ok_double_tol(DEG_TO_RAD(90.0), fromEcliptic->d, 0.00001, + "psSphereRotEclipticToICRS: return correct SphereRot for MJD_2000 date."); + psFree(ecliptic); + psFree(fromEcliptic); + skip_end(); + psFree(s1); + s1 = NULL; + psFree(s2); + s2 = NULL; + } + + //Tests for psSphereRotICRSToGalactic + //Return correct transformation + { + s2 = psSphereRotICRSToGalactic(); + galactic = psSphereRotApply(NULL, s2, icrs); + ok_double_tol(DEG_TO_RAD(122.93192), galactic->r, 0.00001, + "psSphereRotICRSToGalactic: return correct SphereRot."); + ok_double_tol(DEG_TO_RAD(27.12825), galactic->d, 0.00001, + "psSphereRotICRSToGalactic: return correct SphereRot."); + } + //Tests for psSphereRotGalacticToICRS + //Return correct transformation + { + s1 = psSphereRotGalacticToICRS(); + psSphere *test = psSphereRotApply(NULL, s1, galactic); + //XXX: Pretty sure the following can be 180 degrees OR 0 degrees. (= the poles) + ok_double_tol(DEG_TO_RAD(180.0), test->r, 0.00001, + "psSphereRotGalacticToICRS: return correct SphereRot."); + ok_double_tol(DEG_TO_RAD(90.0), test->d, 0.00001, + "psSphereRotGalacticToICRS: return correct SphereRot."); + psFree(test); + } + + //Check for Memory leaks + { + psFree(galactic); + psFree(s2); + psFree(s1); + psFree(mjd2k); + psFree(pre1900); + psFree(icrs); + psFree(sphere); + psFree(myST); + checkMem(); + } + +} + +void testSphereOffsets(void) +{ + diag(" >>>Test 3: psSphereGet/SetOffset Functions"); + + // Allocate data structure + psSphereRot* myST = NULL; + myST = psSphereRotAlloc(ALPHA_P, DELTA_P, PHI_P); + + psSphere *origin = psSphereAlloc(); + psSphere *offset = psSphereAlloc(); + psSphere *empty = NULL; + psSphere *output = NULL; + + //Tests for psSphereGetOffset + //Test Get for NULL position1 + { + output = psSphereGetOffset(empty, origin, PS_LINEAR, PS_RADIAN); + ok( output == NULL, + "psSphereGetOffset: return NULL for NULL position1 input."); + } + //Test Get for NULL position2 + { + output = psSphereGetOffset(origin, empty, PS_LINEAR, PS_RADIAN); + ok( output == NULL, + "psSphereGetOffset: return NULL for NULL position2 input."); + } + //Return NULL for position1 declination > 90 degrees + { + origin->d = 100.0; + output = psSphereGetOffset(origin, offset, PS_LINEAR, PS_RADIAN); + ok( output == NULL, + "psSphereGetOffset: return NULL for position1->d > 90 degrees."); + } + //Return NULL for position1 declination > 90 degrees + { + origin->d = 0.0; + offset->d = 100.0; + output = psSphereGetOffset(origin, offset, PS_LINEAR, PS_RADIAN); + ok( output == NULL, + "psSphereGetOffset: return NULL for position2->d > 90 degrees."); + } + //Return NULL for invalid mode specification + { + offset->d = 0.0; + output = psSphereGetOffset(origin, offset, -1, PS_RADIAN); + ok( output == NULL, + "psSphereGetOffset: return NULL for invalid mode input."); + } + //Return NULL for invalid unit specification + { + output = psSphereGetOffset(origin, offset, PS_SPHERICAL, -1); + ok( output == NULL, + "psSphereGetOffset: return NULL for invalid unit input."); + } + //Return matching sphere offsets regardless of units + { + offset->r = (M_PI / 4.0); //45 deg + offset->d = (M_PI / 6.0); //30 deg + output = psSphereGetOffset(origin, offset, PS_SPHERICAL, PS_ARCMIN); + empty = psSphereGetOffset(origin, offset, PS_SPHERICAL, PS_DEGREE); + ok_double_tol(DEG_TO_RAD(empty->r), MIN_TO_RAD(output->r), 0.0001, + "psSphereGetOffset: return correct offset for differing units."); + ok_double_tol(DEG_TO_RAD(empty->d), MIN_TO_RAD(output->d), 0.0001, + "psSphereGetOffset: return correct offset for differing units."); + psFree(output); + psFree(empty); + } + + //Tests for psSphereSetOffset + output = NULL; + empty = NULL; + //Return NULL for NULL position + { + output = psSphereSetOffset(empty, offset, PS_SPHERICAL, PS_DEGREE); + ok( output == NULL, + "psSphereSetOffset: return NULL for NULL position input."); + } + //Return NULL for NULL offset + { + output = psSphereSetOffset(offset, empty, PS_SPHERICAL, PS_DEGREE); + ok( output == NULL, + "psSphereSetOffset: return NULL for NULL offset input."); + } + //Return NULL for invalid mode specification + { + output = psSphereSetOffset(origin, offset, -1, PS_RADIAN); + ok( output == NULL, + "psSphereSetOffset: return NULL for for invalid mode input."); + } + //Return NULL for invalid unit specification + { + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_RADIAN+1); + ok( output == NULL, + "psSphereSetOffset: return NULL for for invalid unit input."); + } + //Test Set using Spherical mode, Degree units + origin->r = 0.0; + origin->d = 0.0; + offset->r = 45.0; + offset->d = 30.0; + { + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_DEGREE); + skip_start( output == NULL, 2, + "Skipping 2 tests because Sphere output is NULL!"); + ok_double(output->r, M_PI/4.0, + "psSphereSetOffset: return correct spherical offset."); + ok_double(output->d, M_PI/6.0, + "psSphereSetOffset: return correct spherical offset."); + skip_end(); + psFree(output); + } + //Test Set and Get using Linear mode, Radian units + origin->r = 0.0; + origin->d = 0.0; + offset->r = 1.0; + offset->d = 1.0; + { + output = psSphereSetOffset(origin, offset, PS_LINEAR, PS_RADIAN); + empty = psSphereGetOffset(origin, output, PS_LINEAR, PS_RADIAN); + skip_start( empty == NULL, 2, + "Skipping 2 tests because Sphere output is NULL!"); + ok_double_tol(empty->r, offset->r, 0.00001, + "psSphereGetOffset: return correct spherical offset."); + ok_double_tol(empty->d, offset->d, 0.00001, + "psSphereGetOffset: return correct spherical offset."); + skip_end(); + psFree(output); + psFree(empty); + } + //Test Set using SPHERICAL mode, Arcmin units + origin->r = 0.0; + origin->d = 0.0; + offset->r = RAD_TO_MIN(M_PI / 4.0); //45 deg + offset->d = RAD_TO_MIN(M_PI / 6.0); //30 deg + { + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_ARCMIN); + //Test Get using Spherical mode, Arcsec units + empty = psSphereGetOffset(origin, output, PS_SPHERICAL, PS_ARCSEC); + empty->r = SEC_TO_RAD(empty->r); + empty->d = SEC_TO_RAD(empty->d); + skip_start( empty == NULL, 2, + "Skipping 2 tests because Sphere output is NULL!"); + ok_double_tol(empty->r, (M_PI / 4.0), 0.0001, + "psSphereGetOffset: return correct spherical offset."); + ok_double_tol(empty->d, (M_PI / 6.0), 0.0001, + "psSphereGetOffset: return correct spherical offset."); + skip_end(); + psFree(output); + psFree(empty); + } + //Return matching sphere offsets regardless of units + { + offset->r = RAD_TO_SEC(M_PI / 4.0); //45 deg + offset->d = RAD_TO_SEC(M_PI / 6.0); //30 deg + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_ARCSEC); + offset->r = (M_PI / 4.0); //45 deg + offset->d = (M_PI / 6.0); //30 deg + empty = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_RADIAN); + ok_double_tol(empty->r, offset->r, 0.0001, + "psSphereSetOffset: return correct offset for differing units."); + ok_double_tol(empty->d, offset->d, 0.0001, + "psSphereSetOffset: return correct offset for differing units."); + psFree(output); + psFree(empty); + } + + //Check for Memory leaks + { + psFree(origin); + psFree(offset); + psFree(myST); + checkMem(); + } +} + Index: /branches/rel-1-1/psLib/test/astro/tap_psTime_01.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psTime_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psTime_01.c (revision 12167) @@ -0,0 +1,1090 @@ +/** @file tst_psTime_01.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) Allocate psTime structure + * 2) Get current time + * 3) Get UT1 UTC delta + * 4) Convert psTime to MJD + * 5) Convert psTime to JD + * 6) Convert psTime to ISO + * 7) Convert psTime to timeval + * 8) Create psTime from MJD + * 9) Create psTime from JD + * 10) Create psTime from ISO + * 11) Create psTime from timeval + * 12) Create psTime from TM + * 13) Convert time between different types + * + * O) Convert psTime time to LMST + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 20:42:21 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define ERROR_TOL 0.0001 + +// Test Time 1 : July 21, 2004 18:22:24.3 +// MJD = 53207.765559 +// JD = 2453208.265559 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1090434144; +const psU32 testTime1NanosecondsUTC = 272044000; +// TAI Test Time 1 +const psS64 testTime1SecondsTAI = 1090434176; +const psU32 testTime1NanosecondsTAI = 272044000; +const psF64 testTime1MJDTAI = 53207.76592937; +const psF64 testTime1JDTAI = 2453208.26592937; + +// TT Test Time 1 +const psS64 testTime1SecondsTT = 1090434208; +const psU32 testTime1NanosecondsTT = 456044000; +// Expected UT1-UTC IERS A & B +const psF64 testTime1UT1DeltaBullA = -0.457233186; +const psF64 testTime1UT1DeltaBullB = -0.457227; +// UT1 Test Time 1 +const psS64 testTime1SecondsUT1 = 1090434143; +//const psU32 testTime1NanosecondsUT1 = 814810814; +const psU32 testTime1NanosecondsUT1 = 814810861; +// Expected MJD & JD +const psF64 testTime1MJD = 53207.765559; +const psF64 testTime1JD = 2453208.265559; +// Expected ISO string +const char* testTime1Str = "2004-07-21T18:22:24.2Z"; +const char* testTime1StrLeap = "2004-07-21T18:22:60.2Z"; +// Expected timeval values +const psS32 testTime1TimevalSec = 1090434144; +const psS32 testTime1TimevalUsec = 272044; + +// Test Time 2 : Jan. 1, 1973 00:00:00.0000 +// MJD = 41683.0000 +// JD = 2441683.5000 +const psS64 testTime2SecondsUTC = 94694400; +const psU32 testTime2NanosecondsUTC = 0; + +// Expected UT1-UTC IERS A & B +const psF64 testTime2UT1DeltaBullA = 0.000000; +const psF64 testTime2UT1DeltaBullB = 0.000000; + +// Test Time 3 : Sept. 21, 2006 00:00:00.0000 +// MJD = 53999 +// JD = 2453999.5 +const psS64 testTime3SecondsUTC = 1158796800; +const psU32 testTime3NanosecondsUTC = 0; +// Expected UT1-UTC IERS A & B +const psF64 testTime3UT1DeltaBullA = -0.63574; +const psF64 testTime3UT1DeltaBullB = -0.63574; + +// Test Time 4 : Jan. 1, 1969 00:00:00.0000 +// MJD = 40222 +// JD = 2440222.5 +const psS64 testTime4SecondsUTC = -31536000; +const psU32 testTime4NanosecondsUTC = 0; +// Expected MJD and JD +const psF64 testTime4MJD = 40222.0; +const psF64 testTime4JD = 2440222.5; + +// Test Time 5 : Dec 31, 0001 BC 23:59:59 +// MJD = -1397755 +// JD = 1002245.4999 +const psS64 testTime5SecondsUTC = -62125920001; +const psU32 testTime5NanosecondsUTC = 0; + +// Test Time 6 : Jan. 1, 10000 AD 00:00:00 +const psS64 testTime6SecondsUTC = 253202544001; +const psU32 testTime6NanosecondsUTC = 0; + +// Test Time 7 : Jan. 1, 2004 00:00:00,0 +const psS64 testTime7Seconds = 1072915200; +const psU32 testTime7Nanoseconds = 0; +const psS32 testTime7TmYear = 104; +const psS32 testTime7TmMon = 0; +const psS32 testTime7TmDay = 1; +const psS32 testTime7TmHour = 0; +const psS32 testTime7TmMin = 0; +const psS32 testTime7TmSec = 0; + +// Test Time 8 : Dec. 31, 2003 00:00:00,0 +const psS64 testTime8Seconds = 1072828800; +const psU32 testTime8Nanoseconds = 0; +const psS32 testTime8TmYear = 103; +const psS32 testTime8TmMon = 11; +const psS32 testTime8TmDay = 31; +const psS32 testTime8TmHour = 0; +const psS32 testTime8TmMin = 0; +const psS32 testTime8TmSec = 0; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(116); + // Initialize library internal structures + psLibInit("pslib.config"); + + + // Test psTimeAlloc() + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + ok(time != NULL, "psTimeAlloc() did not return NULL"); + skip_start(time == NULL, 4, "Skipping tests because psTimeAlloc() failed"); + ok(time->type == PS_TIME_TAI, "psTimeAlloc() correctly set psTime->type"); + ok(time->sec == 0, "psTimeAlloc() correctly set psTime->sec"); + ok(time->nsec == 0, "psTimeAlloc() correctly set psTime->nsec"); + ok(time->leapsecond == false, "psTimeAlloc() correctly set psTime->leapsecond"); + psFree(time); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate new psTime with invalid time type + // Following should generate error message + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(-100); + ok(time == NULL, "psTimeAlloc(-100) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psTimeGetNow() + { + psMemId id = psMemGetId(); + psTime *timeNow = psTimeGetNow(PS_TIME_TAI); + ok(timeNow != NULL, "psTimeGetNow() returned NULL"); + skip_start(time == NULL, 4, "Skipping tests because psTimeGetNow() failed"); + ok(timeNow->type == PS_TIME_TAI, "psTimeGetNow() correctly set psTime->type"); + psFree(timeNow); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to get time with invalid type + // Following should generate an error message for invalid time type + { + psMemId id = psMemGetId(); + psTime *timeNow = psTimeGetNow(-100); + ok(timeNow == NULL, "psTimeGetNow(-100) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psTimeGetUT1Delta() + // Attempt to convert NULL time + // psTimeGetUT1Delta() should generate an error message for NULL time + { + psMemId id = psMemGetId(); + psF64 ut1Delta = psTimeGetUT1Delta(NULL, PS_IERS_B); + ok(isnan(ut1Delta), "psTimeGetUT1Delta(NULL, PS_IERS_B) returned NAN"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to convert invalid time + // Following should generate an error message for incorrect time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psF64 ut1Delta = psTimeGetUT1Delta(time, PS_IERS_B); + ok(isnan(ut1Delta), "psTimeGetUT1Delta() returned NAN for incorrect time"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to convert time with invalid bulletin + // Following should generate an error message for incorrect bulletin + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = 1; + time->nsec = 2; + time->leapsecond = false; + psF64 ut1Delta = psTimeGetUT1Delta(time, -100); + ok(isnan(ut1Delta), "psTimeGetUT1Delta(time, -100) returned NAN (incorrect bulletin)"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to get delta with valid time and bulletin A + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->type = PS_TIME_UTC; + time->leapsecond = false; + psF64 ut1Delta = psTimeGetUT1Delta(time, PS_IERS_A); + ok(fabs(ut1Delta - testTime1UT1DeltaBullA) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin A"); + // diag("ERROR: UT1 Delta %lf not as expected %lf test time 1 bulletin A", ut1Delta, testTime1UT1DeltaBullA); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to get delta with valid time and bulletin B + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->type = PS_TIME_UTC; + psF64 ut1Delta = psTimeGetUT1Delta(time, PS_IERS_B); + ok(fabs(ut1Delta - testTime1UT1DeltaBullB) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin B"); + // diag("UT1 Delta %lf not as expected %lf test time 1 bulletin B", ut1Delta, testTime1UT1DeltaBullB); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to get delta with valid time and bulletin A + // Following should generate a warning message predating table + // XXX: We don't test whether the warning message is generated + if (1) { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime2SecondsUTC; + time->nsec = testTime2NanosecondsUTC; + time->type = PS_TIME_UTC; + psF64 ut1Delta = psTimeGetUT1Delta(time,PS_IERS_A); + ok(fabs(ut1Delta - testTime2UT1DeltaBullA) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin B"); + // diag("UT1 Delta %lf not as expected %lf test time 2 bulletin A", ut1Delta, testTime2UT1DeltaBullA); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to get delta with valid time and bulletin B + // Following should generate a warning message predating table + // XXX: We don't test whether the warning message is generated + if (1) { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime2SecondsUTC; + time->nsec = testTime2NanosecondsUTC; + time->type = PS_TIME_UTC; + psF64 ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + ok(fabs(ut1Delta - testTime2UT1DeltaBullB) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin B"); + // diag("UT1 Delta %lf not as expected %lf test time 2 bulletin B", ut1Delta, testTime2UT1DeltaBullB); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to get delta with valid time and bulletin A + // Following should generate a warning message postdating table + // XXX: We don't test whether the warning message is generated + if (1) { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + time->type = PS_TIME_UTC; + psF64 ut1Delta = psTimeGetUT1Delta(time,PS_IERS_A); + ok(fabs(ut1Delta - testTime3UT1DeltaBullA) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin B"); + // diag("UT1 Delta %lf not as expected %lf test time 3 bulletin A", ut1Delta, testTime3UT1DeltaBullA); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to get delta with valid time and bulletin B + // Following should generate a warning message postdating table + // XXX: We don't test whether the warning message is generated + if (1) { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + time->type = PS_TIME_UTC; + psF64 ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + ok(fabs(ut1Delta - testTime3UT1DeltaBullB) < ERROR_TOL, "psTimeGetUT1Delta() produced the correct result: bulletin B"); + // diag("UT1 Delta %lf not as expected %lf test time 3 bulletin B", ut1Delta, testTime3UT1DeltaBullB); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToMJD() + // Attempt to convert with time NULL + // Following should generate an error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psF64 mjd = psTimeToMJD(NULL); + ok(isnan(mjd), "psTimeToMJD(NULL) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToMJD() + // Attempt to convert incorrect time + // Following should generate an error message for incorrect time + // Following should generate an error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psF64 mjd = psTimeToMJD(time); + ok(isnan(mjd), "psTimeToMJD() returned NAN for incorrect time"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToMJD() + // Check valid time conversion to MJD after 1/1/1970 epoch + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + psF64 mjd = psTimeToMJD(time); + ok(fabs(mjd - 53207.765929) < ERROR_TOL, "psTimeToMJD() returned correct time after 1/1/1970 epoch"); + // diag("Expected MJD = %lf not as expected %lf", mjd, testTime1MJD); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psTimeToMJD() + // Check valid time conversion to MJD before 1/1/1970 epoch + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime4SecondsUTC; + time->nsec = testTime4NanosecondsUTC; + psF64 mjd = psTimeToMJD(time); + ok(fabs(mjd - testTime4MJD) < ERROR_TOL, "psTimeToMJD() returned correct time before 1/1/1970 epoch"); + // diag("Expected MJD = %lf not as expected %lf", mjd, testTime4MJD); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToJD() + // Attempt to convert with time NULL + // Following should generate an error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psF64 jd = psTimeToJD(NULL); + ok(isnan(jd), "psTimeToJD(NULL) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psTimeToJD() + // Attempt to convert incorrect time + // Following should generate an error message for incorrect time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psF64 jd = psTimeToJD(time); + ok(isnan(jd), "psTimeToJD() returned NAN for incorrect time"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToJD() + // Check valid time conversion to MJD after 1/1/1970 epoch + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + psF64 jd = psTimeToJD(time); + ok(fabs(jd - 2453208.265929) < ERROR_TOL, "psTimeToJD() returned the correct time after 1/1/1970 epoch"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToJD() + // Check valid time conversion to MJD before 1/1/1970 epoch + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime4SecondsUTC; + time->nsec = testTime4NanosecondsUTC; + psF64 jd = psTimeToJD(time); + ok(fabs(jd - testTime4JD) < ERROR_TOL, "psTimeToJD() returned the correct time before 1/1/1970 epoch"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToISO() + // Attempt to convert with NULL time + // Following should generate error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + char *timeStr = psTimeToISO(NULL); + ok(timeStr == NULL, "psTimeToISO(NULL) returned NULL"); + psFree(timeStr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test psTimeToISO() + // Attempt to convert incorrect time + // Following should generate an error message for incorrect time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = 1; + time->nsec = 2e9; + char *timeStr = psTimeToISO(time); + ok(timeStr == NULL, "psTimeToISO(time) returned NULL for incorrect time"); + psFree(time); + psFree(timeStr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToISO() + // Verify return NULL for time prior to year 0000 + // Following should generate error message for time prior year 0000 + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime5SecondsUTC; + time->nsec = testTime5NanosecondsUTC; + char *timeStr = psTimeToISO(time); + ok(timeStr == NULL, "psTimeToISO(time) returned NULL for time prior to year 0000"); + psFree(time); + psFree(timeStr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToISO() + // Verify return NULL for time after to year 9999 + // Following should generate error message for time after year 9999 + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = testTime6SecondsUTC; + time->nsec = testTime6NanosecondsUTC; + char *timeStr = psTimeToISO(time); + ok(timeStr == NULL, "psTimeToISO(time) returned NULL for time after year 9999"); + psFree(time); + psFree(timeStr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToISO() + // Verify return string with valid time + // XXX: These tests fail. They used to succeed in early 2006, I think + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + char *timeStr = psTimeToISO(time); + ok(strcmp(timeStr,testTime1Str) == 0, "psTimeToISO(time) returned correct time (no leapsecond)"); + psFree(timeStr); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToISO() + // Verify return string with valid time and leap second set + // XXX: These tests fail. They used to succeed in early 2006, I think + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = true; + char *timeStr = psTimeToISO(time); + ok(strcmp(timeStr,testTime1StrLeap) == 0, "psTimeToISO(time) returned correct time (with leapsecond)"); + psFree(timeStr); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToTimeval() + // Attempt to convert with NULL time + // Following should generate error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + struct timeval *timevalTime = psTimeToTimeval(NULL); + ok(timevalTime == NULL, "psTimeToTimeval(NULL) returned NULL"); + psFree(timevalTime); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToTimeval() + // Attempt to convert incorrect time + // Following should generate an error message for incorrect time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = 1; + time->nsec = 2e9; + struct timeval *timevalTime = psTimeToTimeval(time); + ok(timevalTime == NULL, "psTimeToTimeval() returned NULL for incorrect time"); + psFree(time); + psFree(timevalTime); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToTimeval() + // Attempt to convert incorrect time + // Following should generate an error message for incorrect time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = -1; + time->nsec = 0; + struct timeval *timevalTime = psTimeToTimeval(time); + ok(timevalTime == NULL, "psTimeToTimeval() returned NULL for incorrect time"); + psFree(time); + psFree(timevalTime); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeToTimeval() + // Verify convert to timeval with valid time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->leapsecond = false; + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + struct timeval *timevalTime = psTimeToTimeval(time); + ok(timevalTime->tv_sec == testTime1TimevalSec, "psTimeToTimeval() returned correct time"); + // diag("Timeval seconds %ld not as expectd %ld", timevalTime->tv_sec, testTime1TimevalSec); + ok(timevalTime->tv_usec == testTime1TimevalUsec, "psTimeToTimeval() returned correct time"); + // diag("Timeval useconds %ld not as expected %ld", timevalTime->tv_usec, testTime1TimevalUsec); + psFree(time); + psFree(timevalTime); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromMJD() + // Attempt to convert valid time to psTime + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromMJD(testTime1MJDTAI); + ok(time->type == PS_TIME_TAI, "psTimeFromMJD() returned the correct type"); + ok(time->sec == testTime1SecondsTAI, "psTimeFromMJD() returned the correct ->sec"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromMJD() + // Attempt to convert valid time before 1970 epoch + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromMJD(testTime4MJD); + ok(time->type == PS_TIME_TAI, "psTimeFromMJD() returned the correct type"); + ok(time->sec == testTime4SecondsUTC, "psTimeFromMJD() returned the correct ->sec"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeFromJD() + // Attempt to convert valid time to psTime + // XXX: This fails on the type test. Should it? + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromJD(testTime1JDTAI); + ok(time->type == PS_TIME_TAI, "psTimeFromJD() returned the correct type"); + ok(time->sec == testTime1SecondsTAI, "psTimeFromJD() returned the correct ->sec"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeFromJD() + // Attempt to convert valid time before 1970 epoch + // XXX: This fails on the type test. Should it? + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromJD(testTime4JD); + ok(time->type != PS_TIME_TAI, "psTimeFromJD() returned the correct type"); + ok(time->sec != testTime4SecondsUTC, "psTimeFromJD() returned the correct ->sec"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromISO() + // Attempt to convert NULL string + // Following should generate error message for NULL ISO string"); + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromISO(NULL, PS_TIME_TAI); + ok(time == NULL, "psTimeFromISO(NULL, PS_TIME_TAI) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromISO() + // Convert valid ISO string + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromISO(testTime1Str, PS_TIME_TAI); + ok(time->type == PS_TIME_TAI, "psTimeFromISO() returned the correct type"); + ok(time->sec == testTime1SecondsUTC, "psTimeFromISO() returned the correct ->sec"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromISO() + // Attempt to convert incorrect ISO string + // Following should generate an error for incorrect ISO string"); + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromISO("Here I am", PS_TIME_TAI); + ok(time == NULL, "psTimeFromISO() returned NULL for incorrect ISO string"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeFromTimeval() + // Attempt to create psTime from NULL timeval ptr + // Following should generate error message for NULL timeval + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromTimeval(NULL); + ok(time == NULL, "psTimeFromTimeval(NULL) returned NULL"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test psTimeFromTimeval() + // Convert valid timeval structure + { + psMemId id = psMemGetId(); + struct timeval *timevalTime = (struct timeval*)psAlloc(sizeof(struct timeval)); + timevalTime->tv_sec = testTime1SecondsTAI; + timevalTime->tv_usec = testTime1NanosecondsTAI / 1000; + psTime *time = psTimeFromTimeval(timevalTime); + ok(time != NULL, "psTimeFromTimeval() returned NULL for correct timeval structure"); + skip_start(time == NULL, 3, "Skipping tests because psTimeFromTimeval() returned NULL"); + ok(time->type == PS_TIME_TAI, "psTimeFromTimeval() returned the correct type"); + ok(time->sec == testTime1SecondsTAI, "psTimeFromTimeval() returned the correct ->sec"); + ok(time->nsec == testTime1NanosecondsTAI, "psTimeFromTimeval() returned the correct ->nsec"); + skip_end(); + psFree(timevalTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromTM() + // Attempt to convert from NULL tm structure ptr + // Following should generate error message for NULL tm ptr + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromTM(NULL); + ok(time == NULL, "psTimeFromTM(NULL) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromTM() + { + psMemId id = psMemGetId(); + // Verify convert for valid tm structure + struct tm *tmTime = (struct tm*)psAlloc(sizeof(struct tm)); + tmTime->tm_year = testTime7TmYear; + tmTime->tm_mon = testTime7TmMon; + tmTime->tm_mday = testTime7TmDay; + tmTime->tm_hour = testTime7TmHour; + tmTime->tm_min = testTime7TmMin; + tmTime->tm_sec = testTime7TmSec; + psTime *time = psTimeFromTM(tmTime); + ok(time != NULL, "psTimeFromTM(NULL) returned non-NULL"); + skip_start(time == NULL, 2, "Skipping tests because psTimeFromTM() returned NULL"); + ok(time->sec == testTime7Seconds, "psTimeFromTM() returned the correct ->sec"); + ok(time->nsec == testTime7Nanoseconds, "psTimeFromTM() returned the correct ->nsec"); + skip_end(); + psFree(tmTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromTM() + // Verify convert for valid tm structure + { + psMemId id = psMemGetId(); + struct tm *tmTime = (struct tm*)psAlloc(sizeof(struct tm)); + tmTime->tm_year = testTime8TmYear; + tmTime->tm_mon = testTime8TmMon; + tmTime->tm_mday = testTime8TmDay; + tmTime->tm_hour = testTime8TmHour; + tmTime->tm_min = testTime8TmMin; + tmTime->tm_sec = testTime8TmSec; + psTime *time = psTimeFromTM(tmTime); + ok(time != NULL, "psTimeFromTM(NULL) returned non-NULL"); + skip_start(time == NULL, 2, "Skipping tests because psTimeFromTM() returned NULL"); + ok(time->sec == testTime8Seconds, "psTimeFromTM() returned the correct ->sec"); + ok(time->nsec == testTime8Nanoseconds, "psTimeFromTM() returned the correct ->nsec"); + psFree(tmTime); + psFree(time); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert NULL time + // Following should generate an error message for NULL time + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time2 = psTimeConvert(NULL, PS_TIME_TAI); + ok(time2 == NULL, "psTimeConvert(NULL, PS_TIME_TAI) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + psFree(time2); + } + + + // psTimeConvert() + // Attempt to convert to incorrect type + // Following should generate an error message for incorrect type + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + psTime *time2 = psTimeConvert(time1,-100); + ok(time2 == NULL, "psTimeConvert(time1, -100) returned NULL"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Following should generate an error message for incorrect type + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->type = PS_TIME_UTC; + psTime *time2 = psTimeConvert(time1,-100); + ok(time2 == NULL, "psTimeConvert(time1, -100) returned NULL"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Following should generate an error message for incorrect type + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->type = PS_TIME_TT; + psTime *time2 = psTimeConvert(time1,-100); + ok(time2 == NULL, "psTimeConvert(time1, -100) returned NULL"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Following should generate an error message for incorrect type + // XXX: We don't test whether the error message is generated + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->type = -100; + psTime *time2 = psTimeConvert(time1,PS_TIME_TAI); + ok(time2 == NULL, "psTimeConvert(time1, PS_TIME_TAI) returned NULL"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert with incorrect time nsec > 1e9 + // Following should generate an error message for incorrect time + // XXX: We don't test whether the error message is generated + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->nsec = 2e9; + psTime *time2 = psTimeConvert(time1,PS_TIME_TAI); + ok(time2 == time1, "psTimeConvert(time1, PS_TIME_TAI) didn't return time1 for incorrect time"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + //Attempt to convert a time to the same type + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = 1; + time1->nsec = 2; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_TAI); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok((time2->sec == 1) && (time2->nsec == 2) && (time2->type == PS_TIME_TAI) && + (time2->leapsecond == false), "There were no time member changes when no change expected"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a UTC time to a TAI + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_TAI); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_TAI, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsTAI, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsTAI, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a UTC time to a TT + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_TT); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_TT, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsTT, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsTT, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a UTC time to UT1 + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_UT1); + ok(time1 == time2, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_UT1, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsUT1, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsUT1, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psTimeConvert() + // Attempt to convert a TAI time to UTC + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_UTC); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_UTC, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsUTC, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsUTC, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a TAI time to TT + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_TT); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_TT, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsTT, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsTT, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a TAI time to UT1 + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_UT1); + ok(time1 == time2, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_UT1, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsUT1, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsUT1, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a TT time to UTC + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_UTC); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_UTC, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsUTC, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsUTC, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a TT time to TAI + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_TAI); + ok(time2 == time1, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_TAI, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsTAI, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsTAI, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert a TT time to UT1 + // XXX: This generates memory errors and aborts, so I if'ed it out + if (0) { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1,PS_TIME_UT1); + ok(time1 == time2, "psTimeConvert() returned time for conversion to same type"); + ok(time2->type == PS_TIME_UT1, "psTimeConvert() returned the correct type"); + ok(time2->sec == testTime1SecondsUT1, "psTimeConvert() returned the correct ->sec"); + ok(time2->nsec == testTime1NanosecondsUT1, "psTimeConvert() returned the correct ->nsec"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // Attempt to convert from UT1 to TAI, UTC, TT + // Following should generate an error message converting from UT1"); + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_TAI); + time1->sec = 1; + time1->nsec = 2; + time1->type = PS_TIME_UT1; + time1->leapsecond = false; + psTime *time2 = psTimeConvert(time1, PS_TIME_UTC); + ok(time2 == NULL, "psTimeConvert() returned NULL for conversion from UT1"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/astro/tap_psTime_02.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psTime_02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psTime_02.c (revision 12167) @@ -0,0 +1,400 @@ +/** @file tst_psTime_02.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) Convert psTime to Local Mean Sidereal Time (LMST) + * 2) Calculate leap second delta between times + * 3) Creation of psTime of type TT + * 4) Creation of psTime of type UTC + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 20:42:21 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define ERROR_TOL 0.001 +// Test Time 1 : May 9, 2005 00:00:00,0 +// MJD = 53499.000 +// JD = 2453499.5 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1115596900; +const psU32 testTime1NanosecondsUTC = 0; +// Expected LMST 15:09:18 +const psF64 testTime1LMST0 = 3.967604; + +// Test Time 2 : May 9, 1995 00:00:00,0 +// MJD = 49846.00 +// JD = 2449846.5 +// UTC Test Time 2 +const psS64 testTime2SecondsUTC = 799977600; +const psU32 testTime2NanosecondsUTC = 0; +// Expected leap second delta +const psS64 testTimeLeapSecondDelta1 = 3; + +// Test Time 3: Jan 1, 1999 00:00:00,0 +// MJD = 51179 +// JD = 2451179.5 +const psS64 testTime3SecondsUTC = 915148800; +const psU32 testTime3NanosecondsUTC = 0; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + psLogSetFormat("HLNM"); + plan_tests(50); + psLibInit("pslib.config"); + + // psTimeToLMST() + // Attempt to get LMST with NULL time + // Following should generate an error message for NULL time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psF64 lmst = psTimeToLMST(NULL, 0); + ok(isnan(lmst), "psTimeToLMST(time,0) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToLMST() + // Attempt to get LMST with valid test time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + psF64 lmst = psTimeToLMST(time, 0.0); + ok(fabs(lmst-testTime1LMST0) < ERROR_TOL, "psTimeToLMST() returned the correct time"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeToLMST() + // Attempt to get LMST with invalid input time UT1 + // Following should generate error message for incorrect type + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + time->type = PS_TIME_UT1; + psF64 lmst = psTimeToLMST(time,0.0); + ok(isnan(lmst), "psTimeToLMST() generated a NAN for incorrect type"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeLeapSecondDelta() + // Attempt to get delta with NULL time1 argument + // Following should generate an error message for NULL time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psS64 delta = psTimeLeapSecondDelta(NULL, NULL); + ok(delta == 0, "psTimeLeapSecondDelta(NULL, NULL) returned 0"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Set test time 1 + // Attempt to get delta with NULL time2 argument + // Following should generate an error message for NULL time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + + psS64 delta = psTimeLeapSecondDelta(time1, NULL); + ok(delta == 0, "psTimeLeapSecondDelta(time1, NULL) returned 0"); + psFree(time1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Set test time 2 with invalid time + // Attempt to get delta with invalid time2 + // Following should generate an error message for invalid time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = 0; + time2->nsec = 2e9; + time2->leapsecond = false; + + psS64 delta = psTimeLeapSecondDelta(time1,time2); + ok(delta == 0, "psTimeLeapSecondDelta(time1, time2) returned 0 with incorrect time2"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Set test time 2 valid + // Attempt to get delta with invalid time1 + // Following should generate an error message for invalid time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->leapsecond = false; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->leapsecond = false; + time2->sec = testTime2SecondsUTC; + time2->nsec = testTime2NanosecondsUTC; + // Set test time 1 incorrect + time1->sec = 0; + time1->nsec = 2e9; + + psS64 delta = psTimeLeapSecondDelta(time1,time2); + ok(delta == 0, "psTimeLeapSecondDelta(time1, time2) returned 0 with incorrect time1"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Set test time 1 to greater time + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->leapsecond = false; + time2->sec = testTime2SecondsUTC; + time2->nsec = testTime2NanosecondsUTC; + + psS64 delta = psTimeLeapSecondDelta(time1,time2); + ok(delta == testTimeLeapSecondDelta1, "psTimeLeapSecondDelta() produced the correct result"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Set test time 1 to lesser time + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = testTime2SecondsUTC; + time2->nsec = testTime2NanosecondsUTC; + psS64 delta = psTimeLeapSecondDelta(time2,time1); + ok(delta == testTimeLeapSecondDelta1, "psTimeLeapSecondDelta() produced the correct result"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to get delta with times equal + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + + psS64 delta = psTimeLeapSecondDelta(time1,time1); + ok(delta == 0, "psTimeLeapSecondDelta() produced the correct result"); + psFree(time1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Attempt to determine if leap second with NULL time + // Following should generate an error message for NULL time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psBool leapsecond = psTimeIsLeapSecond(NULL); + ok(!leapsecond, "psTimeIsLeapSecond(NULL) returned correct value"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Set time + // Attempt to determine if leap second with non-UTC time + // Following should generate an error message for invalid type + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + psBool leapsecond = psTimeIsLeapSecond(time); + ok(!leapsecond, "psTimeIsLeapSecond() returned false with incorrect type"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Set time to UTC + // Attempt to determine if leap second with valid time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + time->type = PS_TIME_UTC; + psBool leapsecond = psTimeIsLeapSecond(time); + ok(!leapsecond, "psTimeIsLeapSecond() returned false"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Set time to UTC with leap second + // XXX: This test fails. Looks like it failed in the code as of 2007. + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + psBool leapsecond = psTimeIsLeapSecond(time); + ok(leapsecond, "psTimeIsLeapSecond() returned true"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Set time to 1 second before a known leap second + // XXX: This test fails. Looks like it failed in the code as of 2007. + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + time->sec--; + psBool leapsecond = psTimeIsLeapSecond(time); + ok(leapsecond, "psTimeIsLeapSecond() returned true"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeIsLeapSecond() + // Set time to 1 second after a known leap second + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + time->sec ++; + psBool leapsecond = psTimeIsLeapSecond(time); + ok(!leapsecond, "psTimeIsLeapSecond() returned false"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromTT() + // Attempt to create psTime with invalid time + // Following should generate an error message for invalid time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromTT(0,2e9); + ok(time == NULL, "psTimeFromTT() returned NULL with incorrect time"); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromTT() + // Attempt to create psTime with valid time + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromTT(testTime1SecondsUTC,testTime1NanosecondsUTC); + ok(time != NULL, "psTimeFromTT() returned non-NULL with valid time"); + skip_start(time == NULL, 2, "Skipping tests because psTimeFromTT() returned NULL"); + + ok(time->type == PS_TIME_TT, "psTimeFromTT() returned correct type"); + ok((time->sec == testTime1SecondsUTC) && (time->nsec == testTime1NanosecondsUTC), + "psTimeFromTT() returned correct ->sec and ->nsec"); + skip_end(); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromUTC() + // Attempt to create psTime with invalid time + // Following should generate an error message for invalid time + // XXX: We do not test the error generation + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromUTC(0, 2e9, true); + ok(time == NULL, "psTimeFromUTC() returned NULL with incorrect time input"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromUTC() + // Attempt to create psTime with valid non-leapsecond time and leapsecond flag true + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromUTC(testTime1SecondsUTC, testTime1NanosecondsUTC, true); + ok(time != NULL, "psTimeFromUTC() returned non-NULL with correct input"); + skip_start(time == NULL, 3, "Skipping tests because psTimeFromUTC() returned NULL"); + ok(time->type == PS_TIME_UTC, "psTimeFromUTC() returned the correct type"); + ok((time->sec == testTime1SecondsUTC) && (time->nsec == testTime1NanosecondsUTC), + "psTimeFromUTC() returned the correct ->sec and ->nsec"); + ok(!time->leapsecond, "psTimeFromUTC() returned the correct leapsecond flag"); + psFree(time); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeFromUTC() + // Attempt to create psTime with valid leapsecond time but leapsecond flag false + { + psMemId id = psMemGetId(); + psTime *time = psTimeFromUTC(testTime3SecondsUTC, testTime3NanosecondsUTC, false); + ok(time != NULL, "psTimeFromUTC() returned non-NULL with correct input"); + skip_start(time == NULL, 5, "Skipping tests because psTimeFromUTC() returned NULL"); + ok(time->type == PS_TIME_UTC, "psTimeFromUTC() returned the correct type"); + ok((time->sec == testTime3SecondsUTC) && (time->nsec == testTime3NanosecondsUTC), + "psTimeFromUTC() returned the correct ->sec and ->nsec"); + ok(time->leapsecond, "psTimeFromUTC() returned the correct leapsecond flag"); + psFree(time); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/astro/tap_psTime_03.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psTime_03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psTime_03.c (revision 12167) @@ -0,0 +1,515 @@ +/** @file tst_psTime_03.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) psTimeMath invalid times + * 2) psTimeMath valid time of different types + * 3) psTimeDelta valid times with different types + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-30 20:31:11 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOL 0.001 + +// Test Time 1 : May 9, 2005 00:00:00,0 +// MJD = 53499.00 +// JD = 2453499.5 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1115596900; +const psU32 testTime1NanosecondsUTC = 0; +// TAI Test Time 1 +const psS64 testTime1SecondsTAI = 1115596932; +const psU32 testTime1NanosecondsTAI = 0; +// TT Test Time 1 +const psS64 testTime1SecondsTT = 1115596964; +const psU32 testTime1NanosecondsTT = 184000000; +// UT1 Test Time 1 +const psS64 testTime1SecondsUT1 = 1115596900; +const psU32 testTime1NanosecondsUT1 = 184000000; +// Delta 1 +const psF64 deltaTime1 = -15.5; +// Expected UTC Time 1 +const psS64 newTestTime1SecondsUTC = 1115596884; +const psU32 newTestTime1NanosecondsUTC = 500000000; +// Expected TAI Time 1 +const psS64 newTestTime1SecondsTAI = 1115596916; +const psU32 newTestTime1NanosecondsTAI = 500000000; +// Delta 2 +const psF64 deltaTime2 = 123.066; +// Expected TT Time 1 w/ delta 2 +const psS64 newTestTime1SecondsTT = 1115597087; +const psU32 newTestTime1NanosecondsTT = 250000000; +// Expected UT1 Time 1 w/ delta 2 +const psS64 newTestTime1SecondsUT1 = 1115597023; +const psU32 newTestTime1NanosecondsUT1 = 250000000; + +// Test Time 2 : Dec. 31 1998 23:59:45,0 +// MJD = 51178.99983 +// JD = 2451179.49983 +// UTC Test Time 1 +const psS64 testTime2SecondsUTC = 915148785; +const psU32 testTime2NanosecondsUTC = 0; +// Delta 3 +const psF64 deltaTime3 = 30.0; +// Expected UTC Time +const psS64 newTestTime2SecondsUTC = 915148814; +const psU32 newTestTime2NanosecondsUTC = 0; + +// Appendix B time conversion tests +// +#define APPB_TESTS 8 +const psS64 testTimeBSeconds[APPB_TESTS] = + { + 915148829, + 915148829, + 915148830, + 915148830, + 915148831, + 915148831, + 915148832, + 915148832 + }; +const psU32 testTimeBNanoseconds[APPB_TESTS] = + { + 0, + 500000000, + 0, + 500000000, + 0, + 500000000, + 0, + 500000000 + }; +const psBool testTimeBLeapsecond[APPB_TESTS] = + { + false, + false, + false, + false, + true, + true, + false, + false + }; +// Expected results +const char* testTimeBStrUTC[APPB_TESTS] = + { + "1998-12-31T23:59:58.0Z", + "1998-12-31T23:59:58.5Z", + "1998-12-31T23:59:59.0Z", + "1998-12-31T23:59:59.5Z", + "1998-12-31T23:59:60.0Z", + "1998-12-31T23:59:60.5Z", + "1999-01-01T00:00:00.0Z", + "1999-01-01T00:00:00.5Z" + }; +const char* testTimeBStrTAI[APPB_TESTS] = + { + "1999-01-01T00:00:29.0Z", + "1999-01-01T00:00:29.5Z", + "1999-01-01T00:00:30.0Z", + "1999-01-01T00:00:30.5Z", + "1999-01-01T00:00:31.0Z", + "1999-01-01T00:00:31.5Z", + "1999-01-01T00:00:32.0Z", + "1999-01-01T00:00:32.5Z" + }; +const char* testTimeBStrTT[APPB_TESTS] = + { + "1999-01-01T00:01:01.1Z", + "1999-01-01T00:01:01.6Z", + "1999-01-01T00:01:02.1Z", + "1999-01-01T00:01:02.6Z", + "1999-01-01T00:01:03.1Z", + "1999-01-01T00:01:03.6Z", + "1999-01-01T00:01:04.1Z", + "1999-01-01T00:01:04.6Z" + }; +const char* testTimeBStrUT1[APPB_TESTS] = + { + "1998-12-31T23:59:58.7Z", + "1998-12-31T23:59:59.2Z", + "1998-12-31T23:59:59.7Z", + "1998-12-31T23:59:60.2Z", + "1998-12-31T23:59:60.7Z", + "1999-01-01T00:00:00.2Z", + "1999-01-01T00:00:00.7Z", + "1999-01-01T00:00:01.2Z" + }; + +// Test Time B1 : Dec 31, 1998 23:59:58,0 +// MJD = 51178.99998 +// JD = 2451179.49998 +//const psS64 testTimeB1SecondsUTC = 915148798; +//const psU32 testTimeB1NanosecondsUTC = 0; +// Expected ISO times +//const char testTimeB1StrUTC[] = "1998-12-31T23:59:58,0Z"; +//const char testTimeB1StrTAI[] = "1999-01-01T00:00:29,0Z"; +//const char testTimeB1StrTT[] = "1999-01-01T00:01:01,1Z"; +//const char testTimeB1StrUT1[] = "1998-12-31T23:59:57,7Z"; +// +// Test Time B2 : Dec 31, 1998 23:59:58,5 +// +// +//const psS64 testTimeB2SecondsUTC = 915148798; +//const psU32 testTimeB2NanosecondsUTC = 500000000; +// Expected ISO times +//const char testTimeB2StrUTC[] = "1998-12-31T23:59:58,5Z"; +//const char testTimeB2StrTAI[] = "1991-01-01T00:00:29,5Z"; +//const char testTimeB2StrTT[] = "1999-01-01T00:01:01,6Z"; +//const char testTimeB2StrUT1[] = "1998-12-31T23:59:58,2Z"; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(48); + psLibInit("pslib.config"); + + // psTimeMath() + // Attempt to perform math operation on NULL time + // Following should generate error message for NULL time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + ok(psTimeMath(NULL, -1.1) == NULL, "psTimeMath(NULL, -1.1) returned NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with invalid nanoseconds + // Following should generate error message for invalid time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = 0; + time->nsec = 2e9; + ok(psTimeMath(time, -1.1) == NULL, "psTimeMath() returns NULL for unallowable time input"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with valid time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + psTime *newTime = psTimeMath(time, deltaTime1); + ok(newTime != NULL, "psTimeMath() returns non-NULL for allowable time input (PS_TIME_UTC)"); + skip_start(newTime == NULL, 2, "Skipping tests because psTimeMath() returned NULL"); + ok(newTime->type == PS_TIME_UTC, "psTimeMath() returns the correct type (PS_TIME_UTC)"); + ok((newTime->sec == newTestTime1SecondsUTC) && (newTime->nsec == newTestTime1NanosecondsUTC), + "psTimeMath() returns the correct ->sec and ->nsec (PS_TIME_UTC)"); + skip_end(); + psFree(newTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with valid TAI time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsTAI; + time->nsec = testTime1NanosecondsTAI; + time->type = PS_TIME_TAI; + psTime *newTime = psTimeMath(time, deltaTime1); + ok(newTime != NULL, "psTimeMath() returns non-NULL for allowable time input (PS_TIME_TAI)"); + skip_start(newTime == NULL, 2, "Skipping tests because psTimeMath() returned NULL"); + ok(newTime->type == PS_TIME_TAI, "psTimeMath() returns the correct type (PS_TIME_TAI)"); + ok((newTime->sec == newTestTime1SecondsTAI) && (newTime->nsec == newTestTime1NanosecondsTAI), + "psTimeMath() returns the correct ->sec and ->nsec (PS_TIME_TAI)"); + skip_end(); + psFree(newTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with valid TT time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsTT; + time->nsec = testTime1NanosecondsTT; + time->type = PS_TIME_TT; + psTime *newTime = psTimeMath(time,deltaTime2); + ok(newTime != NULL, "psTimeMath() returns non-NULL for allowable time input (PS_TIME_TT)"); + skip_start(newTime == NULL, 2, "Skipping tests because psTimeMath() returned NULL"); + ok(newTime->type == PS_TIME_TT, "psTimeMath() returns the correct type (PS_TIME_TT)"); + ok((newTime->sec == newTestTime1SecondsTT) && (newTime->nsec == newTestTime1NanosecondsTT), + "psTimeMath() returns the correct ->sec and ->nsec (PS_TIME_TT)"); + skip_end(); + psFree(newTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with valid TT time + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUT1; + time->nsec = testTime1NanosecondsUT1; + time->type = PS_TIME_UT1; + psTime *newTime = psTimeMath(time,deltaTime2); + ok(newTime != NULL, "psTimeMath() returns non-NULL for allowable time input (PS_TIME_UT1)"); + skip_start(newTime == NULL, 2, "Skipping tests because psTimeMath() returned NULL"); + ok(newTime->type == PS_TIME_UT1, "psTimeMath() returns the correct type (PS_TIME_UT1)"); + ok((newTime->sec == newTestTime1SecondsUT1) && (newTime->nsec == newTestTime1NanosecondsUT1), + "psTimeMath() returns the correct ->sec and ->nsec (PS_TIME_UT1)"); + skip_end(); + psFree(newTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeMath() + // Set up input time with valid UTC time and delt which crosses leap second + { + psMemId id = psMemGetId(); + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime2SecondsUTC; + time->nsec = testTime2NanosecondsUTC; + time->type = PS_TIME_UTC; + psTime *newTime = psTimeMath(time,deltaTime3); + ok(newTime != NULL, "psTimeMath() returns non-NULL for allowable time input (PS_TIME_UTC)"); + skip_start(newTime == NULL, 2, "Skipping tests because psTimeMath() returned NULL"); + ok(newTime->type == PS_TIME_UTC, "psTimeMath() returns the correct type (PS_TIME_UTC)"); + ok((newTime->sec == newTestTime2SecondsUTC) && (newTime->nsec == newTestTime2NanosecondsUTC), + "psTimeMath() returns the correct ->sec and ->nsec (PS_TIME_UTC)"); + skip_end(); + psFree(newTime); + psFree(time); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Attempt to get delta with time1 NULL + // Following should generate error message for NULL time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + psF64 delta = psTimeDelta(NULL, NULL); + ok(fabs(delta-0.0) < ERROR_TOL, "psTimeDelta(NULL, NULL) returned 0.0"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Attempt to get delta with time2 NULL + // Following should generate error message for NULL time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + psF64 delta = psTimeDelta(time1, NULL); + ok(fabs(delta-0.0) < ERROR_TOL, "psTimeDelta(time1, NULL) returned 0.0"); + psFree(time1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Attempt to get delta with time1 invalid + // Following should generate error message for invalid time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time1->sec = 0; + time1->nsec = 2e9; + psF64 delta = psTimeDelta(time1, time2); + ok(fabs(delta-0.0) < ERROR_TOL, "psTimeDelta(time1, NULL) returned 0.0 for unallowed time1 arg"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Attempt to get delta with time2 invalid + // Following should generate error message for invalid time + // XXX: We do not test error generation here + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = 0; + time2->nsec = 2e9; + psF64 delta = psTimeDelta(time1, time2); + ok(fabs(delta-0.0) < ERROR_TOL, "psTimeDelta(time1, NULL) returned 0.0 for unallowed time2 arg"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Set time 2 valid but different type + // Attempt to get delta with different time types + // Following should generate error message for incorrect type + // XXX: We do not test error generation here + // XXX: this currently fails; probably because specs have changed + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + psTime *time2 = psTimeAlloc(PS_TIME_TAI); + time2->sec = newTestTime1SecondsUTC; + time2->nsec = newTestTime1NanosecondsUTC; + psF64 delta = psTimeDelta(time1, time2); + ok(fabs(delta-0.0) < ERROR_TOL, "psTimeDelta(time1, NULL) returned 0.0 for different time types"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Set time 2 to same as time 1 + // Attempt to get delta with valid times of the same type + // XXX: this currently fails; probably because specs have changed + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = newTestTime1SecondsUTC; + time2->nsec = newTestTime1NanosecondsUTC; + psF64 delta = psTimeDelta(time2, time1); + ok(fabs(delta-deltaTime1) < ERROR_TOL, "psTimeDelta(time1, NULL) returned correct delta for times of the same type"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Set time 1 and 2 as different times with same type + // Attempt to get delta with valid times of the same type + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = newTestTime1SecondsTT; + time2->nsec = newTestTime1NanosecondsTT; + time2->type = PS_TIME_TT; + psF64 delta = psTimeDelta(time2,time1); + ok(fabs(delta-deltaTime2) < ERROR_TOL, "psTimeDelta(time1, NULL) returned correct delta for times of the same type"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeDelta() + // Set time 1 and 2 as different times with same type + // Attempt to get delta with valid times of the same type + { + psMemId id = psMemGetId(); + psTime *time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime2SecondsUTC; + time1->nsec = testTime2NanosecondsUTC; + time1->type = PS_TIME_UTC; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = newTestTime2SecondsUTC; + time2->nsec = newTestTime2NanosecondsUTC; + time2->type = PS_TIME_UTC; + psF64 delta = psTimeDelta(time2,time1); + ok(fabs(delta-deltaTime3) < ERROR_TOL, "psTimeDelta(time1, NULL) returned correct delta for times of the same type"); + psFree(time1); + psFree(time2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // psTimeConvert() + // XXX: This currently produces lots of errors + { + for(psS32 i = 0; i < APPB_TESTS; i++) + { + bool errorFlag = false; + // Initialize time for test time B1 + psTime *time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTimeBSeconds[i]; + time->nsec = testTimeBNanoseconds[i]; + + // Verify TAI ISO string + char *timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrTAI[i]) != 0) { + diag("TEST ERROR: TAI ISO string %s not as expected %s", + timeStr, testTimeBStrTAI[i]); + errorFlag = true; + } + psFree(timeStr); + + time = psTimeConvert(time,PS_TIME_TT); + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrTT[i]) != 0) { + diag("TEST ERROR: TT ISO string %s not as expected %s", + timeStr, testTimeBStrTT[i]); + errorFlag = true; + } + psFree(timeStr); + + // Verify UTC ISO string + time = psTimeConvert(time,PS_TIME_UTC); + time->leapsecond = testTimeBLeapsecond[i]; + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrUTC[i]) != 0) { + if(strncmp(timeStr,"1999-01-01T00:00:60.0Z", 10) != 0) { + diag("TEST ERROR: UTC ISO string %s not as expected %s", + timeStr, testTimeBStrUTC[i]); + errorFlag = true; + } + } + psFree(timeStr); + + time = psTimeConvert(time,PS_TIME_UT1); + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrUT1[i]) != 0) { + if(strncmp(timeStr,"1999-01-01T00:00:60.2Z", 10) != 0) { + diag("TEST ERROR: UT1 ISO string %s not as expected %s", + timeStr, testTimeBStrUT1[i]); + errorFlag = true; + } + } + psFree(timeStr); + psFree(time); + ok(!errorFlag, "psTimeConvert() successful on test case %d", i); + } + + } +} Index: /branches/rel-1-1/psLib/test/astro/tap_psTime_04.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tap_psTime_04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tap_psTime_04.c (revision 12167) @@ -0,0 +1,139 @@ +/** @file tst_psTime_04.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * Test A - Initialize time + * Test B - Attempt to open non-existant time config file + * Test C - Attempt to open non-existant time data files + * Test D - Attempt to read incorrect number of files + * Test E - Attempt to read incorrect number of from values + * Test F - Attempt to read data file with typo in number + * Test G - Free data + * Test H - Attempt to use all timer functions + * Test I - Tidal Corrections to UT1-UTC + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * @author David Robbins, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 20:42:21 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(15); + + + // Test A - Initialize time + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("pslib.config"); + psLibFinalize(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test B - Attempt to open non-existant time config file + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("zzz"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test C - Attempt to open non-existant time data files + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("test.psTime.config1"); + psLibFinalize(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test D - Attempt to read incorrect number of files + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("test.psTime.config2"); + psLibFinalize(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test E - Attempt to read incorrect number of from values + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("test.psTime.config3"); + psLibFinalize(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test F - Attempt to read data file with typo in number + // XXX: Noting is actually verified here + { + psMemId id = psMemGetId(); + psLibInit("test.psTime.config4"); + psLibFinalize(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testTimer1() + { + psMemId id = psMemGetId(); + psF64 testTime = 0.0; + psF64 testTime2 = 0.0; + psF64 testTime3 = 0.0; + + ok(psTimerStart("newTime"), "psTimerStart successful"); + testTime = psTimerMark("newTime"); + ok(testTime != 0.0, "psTimerMark() successful"); + testTime2 = psTimerClear("newTime"); + ok(testTime2 != 0.0, "psTimerClear() successful"); + psTimerStart("newTime"); + testTime3 = psTimerStop(); + ok(testTime3 != 0.0, "psTimerStop() successful"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // testTideUT1Corr() + { + psMemId id = psMemGetId(); + psTime *empty = NULL; + psTime *tide = NULL; + psTime *noTide = psTimeAlloc(PS_TIME_UTC); + noTide->sec = 1049160600; + noTide->nsec = 0; + noTide->leapsecond = false; + // Following should generate error message + // XXX: We do not test error generation here + empty = psTime_TideUT1Corr(tide); + ok(empty == NULL, "psTime_TideUT1Corr() returned NULL for NULL input time"); + + empty = psTime_TideUT1Corr(noTide); + ok((empty->sec == 1049160599) && (empty->nsec == 656981971), + "psTime_TideUT1Corr() returned correct values"); + + ok(p_psTimeFinalize(), "p_psTimeFinalize() successful"); + psFree(empty); + psFree(noTide); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/astro/tst_psCoord.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psCoord.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psCoord.c (revision 12167) @@ -0,0 +1,469 @@ +/** @file tst_psCoord.c +* +* @brief The code will ... +* +* +* @author GLG, MHPCC +* +* @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-28 02:53:03 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" +static psS32 testPlaneTransformAlloc(void); +static psS32 testPlaneDistortAlloc(void); +static psS32 testPlaneAlloc(void); +static psS32 testPlaneTransformApply(void); +static psS32 testPlaneDistortApply(void); +static psS32 testPixelsTransform(void); + +testDescription tests[] = { + {testPlaneTransformAlloc, 826, "psPlaneTransformAlloc()", 0, false}, + {testPlaneDistortAlloc, 827, "psPlaneDistortAlloc()", 0, false}, + {testPlaneAlloc, -1, "psPlaneAlloc()", 0, false}, + {testPlaneTransformApply, 831, "psPlaneTransformApply()", 0, false}, + {testPlaneDistortApply, 832, "psPlaneDistortApply()", 0, false}, + {testPixelsTransform, 833, "psPixelsTransform()", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psCoord", tests, argc, argv ) ); +} + +#define ORDER_X 2 +#define ORDER_Y 3 +#define ORDER_Z 4 +#define ORDER_T 5 + +psS32 testPlaneAlloc( void ) +{ + // Allocate psPlane. + psPlane *myP = psPlaneAlloc(); + + // Verify returned value is not NULL + if(myP == NULL) { + psError(PS_ERR_UNKNOWN, true, "psPlaneAlloc() returned NULL not expected."); + return 1; + } + + // Verify returned transform has members set properly + if (!isnan(myP->x)) { + psError(PS_ERR_UNKNOWN,true,"myP->x is %d, should be %d", myP->x, NAN); + return 2; + } + + if (!isnan(myP->y)) { + psError(PS_ERR_UNKNOWN,true,"myP->y is %d, should be %d", myP->y, NAN); + return 3; + } + + if (!isnan(myP->xErr)) { + psError(PS_ERR_UNKNOWN,true,"myP->xErr is %d, should be %d", myP->xErr, NAN); + return 4; + } + + if (!isnan(myP->yErr)) { + psError(PS_ERR_UNKNOWN,true,"myP->yErr is %d, should be %d", myP->yErr, NAN); + return 5; + } + + // Free psPlane + psFree(myP); + + return 0; +} + +psS32 testPlaneTransformAlloc( void ) +{ + // Allocate psPlaneTransform with known x and y terms + psPlaneTransform *myPT = psPlaneTransformAlloc(ORDER_X, ORDER_Y); + + // Verify returned value is not NULL + if(myPT == NULL) { + psError(PS_ERR_UNKNOWN,true,"Function returned NULL not expected."); + return 1; + } + + // Verify returned transform has members set properly + if (myPT->x->nX != ORDER_X) { + psError(PS_ERR_UNKNOWN,true,"myPT->x->nX is %d, should be %d", + myPT->x->nX, ORDER_X); + return 2; + } + if (myPT->y->nX != ORDER_X) { + psError(PS_ERR_UNKNOWN,true,"myPT->y->nX is %d, should be %d", + myPT->y->nX, ORDER_X); + return 3; + } + if (myPT->x->nY != ORDER_Y) { + psError(PS_ERR_UNKNOWN,true,"myPT->x->nY is %d, should be %d", + myPT->x->nY, ORDER_Y); + return 4; + } + if (myPT->y->nY != ORDER_Y) { + psError(PS_ERR_UNKNOWN,true,"myPT->y->nY is %d, should be %d", + myPT->y->nY, ORDER_Y); + return 5; + } + + // Free plane transform + psFree(myPT); + + // Attempt to specify negative x order and verify NULL returned and errror message generated + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: negative x order"); + myPT = psPlaneTransformAlloc(-1, 1); + if (myPT != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneTransformAlloc() did not return NULL."); + return 6; + } + + // Attempt to specify negative y order and verify NULL returned and error message generated + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: negative y order"); + myPT = psPlaneTransformAlloc(1, -1); + if (myPT != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneTransformAlloc() did not return NULL."); + return 7; + } + + psFree(myPT); + + return 0; +} + + +psS32 testPlaneDistortAlloc( void ) +{ + // Invoke function with known parameters + psPlaneDistort *myPD = psPlaneDistortAlloc(ORDER_X, ORDER_Y, ORDER_Z, ORDER_T); + + // Verify NULL is not returned + if(myPD == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return of NULL not expected"); + return 1; + } + // Verify the terms are properly set after allocation + if (myPD->x->nX != ORDER_X) { + psError(PS_ERR_UNKNOWN,true,"myPD->x->nX is %d, should be %d", + myPD->x->nX, ORDER_X); + return 2; + } + if (myPD->y->nX != ORDER_X) { + psError(PS_ERR_UNKNOWN,true,"myPD->y->nX is %d, should be %d", + myPD->y->nX, ORDER_X); + return 3; + } + if (myPD->x->nY != ORDER_Y) { + psError(PS_ERR_UNKNOWN,true,"myPD->x->nY is %d, should be %d", + myPD->x->nY, ORDER_Y); + return 4; + } + if (myPD->y->nY != ORDER_Y) { + psError(PS_ERR_UNKNOWN,true,"myPD->y->nY is %d, should be %d", + myPD->y->nY, ORDER_Y); + return 5; + } + if (myPD->x->nZ != ORDER_Z) { + psError(PS_ERR_UNKNOWN,true,"myPD->x->nZ is %d, should be %d", + myPD->x->nZ, ORDER_Z); + return 6; + } + if (myPD->y->nZ != ORDER_Z) { + psError(PS_ERR_UNKNOWN,true,"myPD->y->nZ is %d, should be %d", + myPD->y->nZ, ORDER_Z); + return 7; + } + if (myPD->x->nT != ORDER_T) { + psError(PS_ERR_UNKNOWN,true,"myPD->x->nT is %d, should be %d", + myPD->x->nT, ORDER_T); + return 8; + } + if (myPD->y->nT != ORDER_T) { + psError(PS_ERR_UNKNOWN,true,"myPD->y->nT is %d, should be %d", + myPD->y->nT, ORDER_T); + return 9; + } + // Free psPlaneTransform + psFree(myPD); + + // Invoke function with negative x order parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for negative x order"); + myPD = psPlaneDistortAlloc(-1, 1, 1, 1); + if (myPD != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneDistortAlloc() did not return NULL."); + return 10; + } + + // Invoke function with negative y order parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for negative y order"); + myPD = psPlaneDistortAlloc(1, -1, 1, 1); + if (myPD != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneDistortAlloc() did not return NULL."); + return 11; + } + + // Invoke function with negative z order parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for negative z order"); + myPD = psPlaneDistortAlloc(1, 1, -1, 1); + if (myPD != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneDistortAlloc() did not return NULL."); + return 12; + } + + // Invoke function with negative t order parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for negative w order"); + myPD = psPlaneDistortAlloc(1, 1, 1, -1); + if (myPD != NULL) { + psError(PS_ERR_UNKNOWN,true,"psPlaneDistortAlloc() did not return NULL."); + } + + return 0; +} + +#define N 10 +// We do a simple identity transformation on a few x,y pairs. +psS32 testPlaneTransformApply( void ) +{ + psPlane* out = NULL; + psPolynomial2D* tmp2DPoly = NULL; + psPlane* rc; + + // Create input coordinate + psPlane* in = psPlaneAlloc(); + if(in == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return from psPlaneAlloc"); + return 1; + } + + // Create transform + psPlaneTransform* pt = psPlaneTransformAlloc(2,2); + + // Set transform coefficients so the x coord input will equal x coord output, same for y + pt->x->coeff[1][0] = 1.0; + pt->y->coeff[0][1] = 1.0; + + // Apply transform for several points + for (psS32 i = 0; i < N; i++) { + in->x = (psF64) i; + in->y = (psF64) (i + 5.0); + in->xErr = 0.0; + in->yErr = 0.0; + + // Verify function does not return NULL + out = psPlaneTransformApply(out, pt, in); + if( out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Expected non-NULL return value"); + return 1; + } + // Verify the expected values are returned + if (FLT_EPSILON < fabs(out->x - in->x)) { + psError(PS_ERR_UNKNOWN,true,"out.x is %lf, should be %lf", out->x, in->x); + return 3; + } + if (FLT_EPSILON < fabs(out->y - in->y)) { + psError(PS_ERR_UNKNOWN,true,"out.y is %lf, should be %lf", out->y, in->y); + return 4; + } + } + psFree(out); + + // Verify return null and error message generater for null specified transform + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL psPlaneTransform"); + rc = psPlaneTransformApply(NULL, NULL, in); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Function did not return NULL as expected for NULL psPlaneTransform."); + return 5; + } + + // Verify return null and error message generated for null psPlaneTransform x coeff + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL x coeff psPlaneTransform"); + tmp2DPoly = pt->x; + pt->x = NULL; + rc = psPlaneTransformApply(NULL, pt, in); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Function did not return NULL as expected for NULL x coeff psPlaneTransform"); + return 6; + } + pt->x = tmp2DPoly; + + // Verify return null and error message generated for null psPlaneTransform y coeff + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL y coeff psPlaneTransform"); + tmp2DPoly = pt->y; + pt->y = NULL; + rc = psPlaneTransformApply(NULL, pt, in); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Function did not return NULL as expected for NULL y coeff psPlaneTransform"); + return 7; + } + pt->y = tmp2DPoly; + + // Verify return null and error message generated for null psPlane coordinate + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL psPlane"); + rc = psPlaneTransformApply(NULL, pt, NULL); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Function did not return NULL as expected for NULL psPlane"); + return 8; + } + + psFree(pt); + psFree(in); + + return 0; +} + +#define COLOR 1.0 +#define MAGNITUDE 1.0 +// We do a simple identity transformation on a few x,y pairs. For x and y, +// we add in the COLOR and MAGNITUDE. +psS32 testPlaneDistortApply( void ) +{ + psPlane* out = NULL; + psPlane* rc = NULL; + psPolynomial4D* tmp4DPoly = NULL; + + // Allocate input coordinate + psPlane* in = psPlaneAlloc(); + + // Create psPlaneTransform structure + psPlaneDistort* pt = psPlaneDistortAlloc(2, 2, 2, 2); + + pt->x->coeff[1][0][0][0] = 1.0; + pt->x->coeff[0][0][1][0] = 1.0; + pt->x->coeff[0][0][0][1] = 1.0; + + pt->y->coeff[0][1][0][0] = 1.0; + pt->y->coeff[0][0][1][0] = 1.0; + pt->y->coeff[0][0][0][1] = 1.0; + + for (psS32 i = 0; i < N; i++) { + in->x = (psF64) i; + in->y = (psF64) (i + 5.0); + in->xErr = 0.0; + in->yErr = 0.0; + out = psPlaneDistortApply(out, pt, in, COLOR, MAGNITUDE); + + // Verify return value is not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Expected non-NULL return"); + return 1; + } + // Verify return value contains expected values + if (FLT_EPSILON < fabs(out->x - COLOR - MAGNITUDE - in->x)) { + psError(PS_ERR_UNKNOWN,true,"out->x is %lf, should be %lf", + out->x, in->x + COLOR + MAGNITUDE); + return 2; + } + if (FLT_EPSILON < fabs(out->y - COLOR - MAGNITUDE - in->y)) { + psError(PS_ERR_UNKNOWN,true,"out->y is %lf, should be %lf", + out->y, in->y + COLOR + MAGNITUDE); + return 3; + } + } + psFree(out); + + // Attempt to invoke psPlaneDistortApply with NULL psPlaneDistort + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null psPlaneDistort"); + rc = psPlaneDistortApply(NULL, NULL, in, COLOR, MAGNITUDE); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL."); + return 4; + } + + // Attempt to invoke psPlaneDistortApply with NULL psPlaneDistort x member + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null x member psPlaneDistort"); + tmp4DPoly = pt->x; + pt->x = NULL; + rc = psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL."); + return 5; + } + pt->x = tmp4DPoly; + + // Attempt to invoke psPlaneDistortApply with NULL psPlaneDistort y member + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null y member psPlaneDistort"); + tmp4DPoly = pt->y; + pt->y = NULL; + rc = psPlaneDistortApply(NULL, pt, in, COLOR, MAGNITUDE); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL."); + return 6; + } + pt->y = tmp4DPoly; + + // Attempt to invoke psPlaneDistortApply with NULL input psPlane + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null input psPlane"); + rc = psPlaneDistortApply(NULL, pt, NULL, COLOR, MAGNITUDE); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL"); + return 7; + } + + psFree(pt); + psFree(in); + + return 0; +} + +psS32 testPixelsTransform(void) +{ + psPixels *input = NULL; + psPixels *output = NULL; + psPlaneTransform *trans = psPlaneTransformAlloc(1, 3); + + //Return NULL for NULL input pixels + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + output = psPixelsTransform(output, input, trans); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psPixelsTransform failed to return NULL for NULL input pixels.\n"); + return 1; + } + //Return NULL for NULL input PlaneTransform + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + output = psPixelsTransform(output, input, NULL); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psPixelsTransform failed to return NULL for NULL psPlaneTransform.\n"); + return 2; + } + + input = psPixelsAlloc(2); + input->n = 2; + input->data[0].x = 1.0; + input->data[0].y = 1.0; + input->data[1].x = 1.0; + input->data[1].y = 6.0; + trans->x->coeff[0][0] = 0; + trans->x->coeff[1][0] = 1.0; + trans->y->coeff[0][0] = 0; + trans->y->coeff[0][0] = 0; + trans->y->coeff[0][2] = 0.5; + + //Verify that the output pixels are what we expected + output = psPixelsTransform(output, input, trans); + int nExpected = 9; + if (output->n != nExpected) { + psError(PS_ERR_BAD_PARAMETER_SIZE, false, + "psPixelsTransform failed to return the expected number of pixels.\n"); + printf("\n output returned with %ld pixels\n\n", output->n); + for (int i = 0; i < output->n; i++) { + printf(" (%6.2lf, %6.2lf) pixel %d\n", output->data[i].x, output->data[i].y, i+1); + } + return 3; + } + + psFree(trans); + psFree(input); + psFree(output); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/astro/tst_psCoord01.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psCoord01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psCoord01.c (revision 12167) @@ -0,0 +1,999 @@ +/** @file tst_psCoord01.c +* +* @brief The code will test several functions with PSLib source file +* psCoord.c +* +* @author Eric Van Alst, MHPCC +* +* XXX: must do (r,d) -> (x, y) -> (r, d) test to ensure correctness. +* XXX: The (Xs, Ys) scales are not be used properly. +* +* +* @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-26 01:23:41 $ +* @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-26 01:23:41 $ +* +* Copyright 2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testProjectionAlloc(void); +static psS32 testProjectTan(void); +static psS32 testDeprojectTan(void); +static psS32 testProjectSin(void); +static psS32 testDeprojectSin(void); +static psS32 testProjectAit(void); +static psS32 testDeprojectAit(void); +static psS32 testProjectPar(void); +static psS32 testDeprojectPar(void); +static psS32 testProjectFail(void); +static psS32 testDeprojectFail(void); +static psS32 testSetOffsetSphere(void); +static psS32 testSetOffsetLinear(void); +static psS32 testGetOffsetSphere(void); +static psS32 testGetOffsetLinear(void); +static psS32 testProjectTanDeProjectTan(void); + +testDescription tests[] = { + {testProjectionAlloc, 833, "psProjectionAlloc",0,false}, + {testProjectFail, 834, "psProject",0,false}, + {testDeprojectFail, 835, "psProject",0,false}, + {testSetOffsetSphere, 0000, "psSphereSetOffset",0,false}, + {testSetOffsetLinear, 0000, "psSphereSetOffset",0,false}, + {testGetOffsetSphere, 0000, "psSphereGetOffset",0,false}, + {testGetOffsetLinear, 0000, "psSphereGetOffset",0,false}, + {NULL}, + /* XXX: Tests removed pending valuation -- test itself may be faulty. */ + {testProjectTan, 834, "psProject(TAN)",0,false}, + {testDeprojectTan, 835, "psDeproject(TAN)",0,false}, + {testProjectSin, 834, "psProject(SIN)",0,false}, + {testDeprojectSin, 835, "psDeproject(SIN)",0,false}, + {testProjectAit, 834, "psProject(AIT)",0,false}, + {testDeprojectAit, 835, "psDeproject(AIT)",0,false}, + {testProjectPar, 834, "psProject(PAR)",0,false}, + {testDeprojectPar, 835, "psDeproject(PAR)",0,false}, + {testProjectTanDeProjectTan, 0000, "psProject(TAN) -> psDeproject(TAN)",0,false} + }; + + +#define ERROR_TOL 0.0001 +#define TESTPOINTS 4 +#define DEG_INC 30.0 + +#define MY_TINY 0.0001 +#define PS_COMPARE_TINY_THEN_PRINT_ERROR(ACTUAL, EXPECT, TESTSTATUS) \ +if (MY_TINY < fabs(EXPECT - ACTUAL)) { \ + psError(PS_ERR_UNKNOWN,true,"%s is %lg, should be %lg", #ACTUAL, ACTUAL, EXPECT, TESTSTATUS); \ + return TESTSTATUS; \ +} + + +// alpha, delta, alpha-center, delta-center, scale-x, scale-y +psF64 projectionTestPoint[TESTPOINTS][6] = { + { 0.785398, 0.785398, 0.000000, 0.000000, 1.000000, 1.000000 }, + { 0.100000, 1.500000, 0.500000, 0.250000, 1.000000, 1.000000 }, + { 0.628319, 0.448799, 0.000000, 0.000000, 0.250000, 0.750000 }, + { -1.047196, 0.222222, -0.250000, 0.000000, 1.500000, 1.250000 } + }; + +// Expected values for TAN +psF64 projectionTanExpected[TESTPOINTS][2] = { + { -1.000000, -1.414214 }, + { 0.088884, -3.066567 }, + { -0.181636, -0.446444 }, + { 1.535818, -0.404231 } + }; + +// Expected values for SIN +psF64 projectionSinExpected[TESTPOINTS][2] = { + { -0.500000, -0.707101 }, + { 0.027546, -0.950366 }, + { -0.132394, -0.325413 }, + { 1.046712, -0.275497 } + }; + +// Expected values for AIT +psF64 projectionAitExpected[TESTPOINTS][2] = { + { -0.549175, 0.523375 }, + { 0.027895, 0.313807 }, + { -0.162822, 0.607646 }, + { 1.455312, 0.955388 } + }; + +// Expected values for PAR +psF64 projectionParExpected[TESTPOINTS][2] = { + { -0.541244, 0.545532 }, + { 0.027703, 0.329366 }, + { -0.157157, 0.633550 }, + { 1.432951, 0.971372 } + }; + +// Testpoints, offset and expected values for psSphereSetOffset test +#define TESTPOINTS_OFFSET 4 +psF64 setOffsetTestpoint[TESTPOINTS_OFFSET][2] = { + { 0.50, 0.50 }, + {-0.50, 0.50 }, + { 0.00, 0.00 }, + { 1.50, -0.10 } + }; + +psF64 setOffsetOffset[TESTPOINTS_OFFSET][2] = { + { 0.190761, -0.272205 }, + {-0.553049, -0.460926 }, + { 0.100335,-14.172222 }, + {14.172222, -0.100335 } + }; + +psF64 setOffsetResult[TESTPOINTS_OFFSET][2] = { + //XXX: Eugene says his values are correct, so i'm changing these values to the output. + // { 0.25, 0.75 }, + // { 0.20, 0.80 }, + // {-0.10, 1.50 }, + // { 0.00, 0.00 } + { 0.68702, 0.230294}, + { -0.966388, 0.0608434 }, + {0.10, -1.50 }, + { 3.00141, -0.0140538 } + }; + +psF64 getOffsetTestpoint1[TESTPOINTS_OFFSET][2] = { + { 0.00, 0.00 }, + {-0.25, 0.50 }, + { 0.50, -0.25 }, + { 0.25, -0.10 } + }; + +psF64 getOffsetTestpoint2[TESTPOINTS_OFFSET][2] = { + { 0.75, 0.25 }, + { 0.40, -0.60 }, + { 1.50, 0.50 }, + { 0.10, 0.75 } + }; + +psF64 getOffsetResult[TESTPOINTS_OFFSET][2] = { + //XXX: Eugene says his values are correct, so i'm changing these values to the output. + // { -0.931596, -0.348976 }, + // { -1.632830, 2.649629 }, + // { -2.166795, -1.707211 }, + // { 0.167752, -1.151351 } + { 0.931596, 0.348976 }, + { 1.632830, -2.649629 }, + { 2.166795, 1.707211 }, + { -0.167752, 1.151351 } + }; + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel( PS_LOG_INFO ); + + return ( !runTestSuite(stderr,"psCoord",tests,argc,argv) ); +} + +psS32 testProjectionAlloc(void) +{ + // Allocate new psProjection structure + psProjection* myProjection = psProjectionAlloc(1.1, 2.2, 3.3, 4.4, PS_PROJ_AIT); + + // Verify NULL is not returned + if(myProjection == NULL) { + psError(PS_ERR_UNKNOWN,true,"Unexpected return of NULL"); + return 1; + } + // Verify the members are set correctly + if(myProjection->R != 1.1) { + psError(PS_ERR_UNKNOWN,true,"R member set to %lg, but expected %lg", + myProjection->R, 1.1); + return 2; + } + if(myProjection->D != 2.2) { + psError(PS_ERR_UNKNOWN,true,"D member set to %lg, but expected %lg", + myProjection->D, 2.2); + return 3; + } + if(myProjection->Xs != 3.3) { + psError(PS_ERR_UNKNOWN,true,"Xs member set to %lg, but expected %lg", + myProjection->Xs, 3.3); + return 4; + } + if(myProjection->Ys != 4.4) { + psError(PS_ERR_UNKNOWN,true,"Ys member set to %lg, but expected %lg", + myProjection->Ys, 4.4); + return 5; + } + if(myProjection->type != PS_PROJ_AIT) { + psError(PS_ERR_UNKNOWN,true,"type member set to %d, but expected %d", + myProjection->type, PS_PROJ_AIT); + return 6; + } + + // Free projection + psFree(myProjection); + + return 0; +} + +//HEY +psS32 testProjectTan(void) +{ + psPlane* out = NULL; + psSphere* in = psSphereAlloc(); + psSphere* inTest = NULL; + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + out = psProject(in, myProjection); + inTest = psDeproject(out, myProjection); + + // Verify output not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return i*10+3; + } + + // Verify output is as expected + if(fabs(out->x - projectionTanExpected[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionTanExpected[i][0]); + return i*10+1; + } + if(fabs(out->y - projectionTanExpected[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionTanExpected[i][1]); + return i*10+2; + } + + // Verify output is as expected + if(fabs(in->r - inTest->r) > ERROR_TOL) { + printf("TEST ER (in->r, inTest->r) (%.2f %.2f)\n", in->r, inTest->r); + return i*10+4; + } + if(fabs(in->d - inTest->d) > ERROR_TOL) { + printf("TEST ERROR: (in->d, inTest->d) (%.2f %.2f)\n", in->d, inTest->d); + return i*10+5; + } + + psFree(inTest); + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testDeprojectTan(void) +{ + psSphere* out = NULL; + psPlane* in = psPlaneAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and projection members + in->x = projectionTanExpected[i][0]; + in->y = projectionTanExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + out = psDeproject(in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return 20*i; + } + + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + return 20*i + 1; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + return 20*i + 2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testProjectSin(void) +{ + psPlane* out = NULL; + psSphere* in = psSphereAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_SIN); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + out = psProject(in, myProjection); + + // Verify output not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return i*10; + } + + // Verify output is as expected + if(fabs(out->x - projectionSinExpected[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionSinExpected[i][0]); + return i*10+1; + } + if(fabs(out->y - projectionSinExpected[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionSinExpected[i][1]); + return i*10+2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testDeprojectSin(void) +{ + psSphere* out = NULL; + psPlane* in = psPlaneAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_SIN); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and projection members + in->x = projectionSinExpected[i][0]; + in->y = projectionSinExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + out = psDeproject(in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return 20*i; + } + + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + return 20*i + 1; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + return 20*i + 2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testProjectAit(void) +{ + psPlane* out = NULL; + psSphere* in = psSphereAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_AIT); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + out = psProject(in, myProjection); + + // Verify output not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return i*10; + } + + // Verify output is as expected + if(fabs(out->x - projectionAitExpected[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionAitExpected[i][0]); + return i*10+1; + } + if(fabs(out->y - projectionAitExpected[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionAitExpected[i][1]); + return i*10+2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testDeprojectAit(void) +{ + psSphere* out = NULL; + psPlane* in = psPlaneAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_AIT); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and projection members + in->x = projectionAitExpected[i][0]; + in->y = projectionAitExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + out = psDeproject(in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return 20*i; + } + + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + return 20*i + 1; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + return 20*i + 2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testProjectPar(void) +{ + psPlane* out = NULL; + psSphere* in = psSphereAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_PAR); + + // Perform projecton on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and project members + in->r = projectionTestPoint[i][0]; + in->d = projectionTestPoint[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform projection + out = psProject(in, myProjection); + + // Verify output not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return i*10; + } + + // Verify output is as expected + if(fabs(out->x - projectionParExpected[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psPlane->x = %lg expected %lg", + i,out->x, projectionParExpected[i][0]); + return i*10+1; + } + if(fabs(out->y - projectionParExpected[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint % d psPlane->y = %lg expected %lg", + i,out->y, projectionParExpected[i][1]); + return i*10+2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testDeprojectPar(void) +{ + psSphere* out = NULL; + psPlane* in = psPlaneAlloc(); + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_PAR); + + // Perform deprojection on various test points + for(psS32 i = 0; i < TESTPOINTS; i++) { + + // Initialize input and projection members + in->x = projectionParExpected[i][0]; + in->y = projectionParExpected[i][1]; + myProjection->R = projectionTestPoint[i][2]; + myProjection->D = projectionTestPoint[i][3]; + myProjection->Xs = projectionTestPoint[i][4]; + myProjection->Ys = projectionTestPoint[i][5]; + + // Perform deprojection + out = psDeproject(in, myProjection); + + // Verify output is not NULL + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return null not expected"); + return 20*i; + } + + // Verify output is as expected + if(fabs(out->r - projectionTestPoint[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->r = %lg expected %lg", + i,out->r,projectionTestPoint[i][0]); + return 20*i + 1; + } + if(fabs(out->d - projectionTestPoint[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d psSphere->d = %lg expected %lg", + i, out->d, projectionTestPoint[i][1]); + return 20*i + 2; + } + psFree(out); + } + + psFree(in); + psFree(myProjection); + + return 0; +} + +psS32 testProjectFail(void) +{ + psPlane* out = NULL; + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + psSphere* in = psSphereAlloc(); + + // Invoke function with null coordinate argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null coord arg"); + out = psProject(NULL, myProjection); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 1; + } + + // Invoke function with null projection argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null projection arg"); + out = psProject(in, NULL); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 2; + } + + // Invoke function with invalid projection type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid projection type"); + myProjection->type = PS_PROJ_NTYPE; + out = psProject(in,myProjection); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 3; + } + + psFree(myProjection); + psFree(in); + + return 0; +} + +psS32 testDeprojectFail(void) +{ + psSphere* out = NULL; + psProjection* myProjection = psProjectionAlloc(0.0,0.0,1.0,1.0,PS_PROJ_TAN); + psPlane* in = psPlaneAlloc(); + + // Invoke function with null coordinate argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null coord arg"); + out = psDeproject(NULL, myProjection); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 1; + } + + // Invoke function with null projection argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null projection arg"); + out = psDeproject(in, NULL); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 2; + } + + // Invoke function with invalid projection type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid projection type"); + myProjection->type = PS_PROJ_NTYPE; + out = psDeproject(in,myProjection); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return null as expected"); + return 3; + } + + psFree(myProjection); + psFree(in); + + return 0; +} + +psS32 testSetOffsetSphere( void ) +{ + psSphere* position1 = psSphereAlloc(); + psSphere* position2 = NULL; + psSphere* offset = psSphereAlloc(); + psSphere* tmpOffset = psSphereAlloc(); + + // Initialize first position + position1->r = DEG_TO_RAD(90.0); + position1->d = DEG_TO_RAD(45.0); + position1->rErr = 0.0; + position1->dErr = 0.0; + + // Using various offset verify spherical offset + // Use all the valid unit types + for (psF64 r = 0.0; r < 180.0; r += DEG_INC) { + for (psF64 d = 0.0; d < 90.0; d += DEG_INC) { + + offset->r = DEG_TO_RAD(r); + offset->d = DEG_TO_RAD(d); + offset->rErr = 0.0; + offset->dErr = 0.0; + + position2 = psSphereSetOffset(position1, offset, PS_SPHERICAL, PS_RADIAN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 1); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 2); + psFree(position2); + + tmpOffset->r = RAD_TO_DEG(offset->r); + tmpOffset->d = RAD_TO_DEG(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_DEGREE); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 3); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 4); + psFree(position2); + + tmpOffset->r = RAD_TO_MIN(offset->r); + tmpOffset->d = RAD_TO_MIN(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_ARCMIN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 5); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 6); + psFree(position2); + + tmpOffset->r = RAD_TO_SEC(offset->r); + tmpOffset->d = RAD_TO_SEC(offset->d); + tmpOffset->rErr = 0.0; + tmpOffset->dErr = 0.0; + position2 = psSphereSetOffset(position1, tmpOffset, PS_SPHERICAL, PS_ARCSEC); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->r, (position1->r + offset->r), 7); + PS_COMPARE_TINY_THEN_PRINT_ERROR(position2->d, (position1->d + offset->d), 8); + psFree(position2); + } + } + + // Attempt to call function with null input coordinate + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message null input coord"); + position2 = psSphereSetOffset(NULL, offset, PS_LINEAR, PS_ARCSEC); + if (position2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL"); + return 30; + } + + // Attempt to call function with null offset + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message null offset"); + position2 = psSphereSetOffset(position1, NULL, PS_LINEAR, PS_ARCSEC); + if (position2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL"); + return 31; + } + + // Attempt to call function with invalid mode + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid mode"); + position2 = psSphereSetOffset(position1, offset, 0x54321, 0); + if (position2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL"); + return 32; + } + + // Attempt to call function with invalid unit + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message invalid unit"); + position2 = psSphereSetOffset(position1, offset, PS_SPHERICAL, 0x54321); + if (position2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL"); + return 33; + } + + psFree(position1); + psFree(offset); + psFree(tmpOffset); + + return 0; +} + +psS32 testSetOffsetLinear(void) +{ + psSphere* coord = psSphereAlloc(); + psSphere* offset = psSphereAlloc(); + psSphere* out = NULL; + + for(psS32 i = 0; i < TESTPOINTS_OFFSET; i++) { + + coord->r = setOffsetTestpoint[i][0]; + coord->d = setOffsetTestpoint[i][1]; + + offset->r = setOffsetOffset[i][0]; + offset->d = setOffsetOffset[i][1]; + + out = psSphereSetOffset(coord, offset, PS_LINEAR, PS_RADIAN); + + if(fabs(out->r - setOffsetResult[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d: Result out->r = %lg not equal to expected %lg", + i, out->r, setOffsetResult[i][0]); + return i*10+1; + } + if(fabs(out->d - setOffsetResult[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d: Result out->d = %lg not equal to expected %lg", + i,out->d, setOffsetResult[i][1]); + return i*10+2; + } + + psFree(out); + } + + psFree(coord); + psFree(offset); + + return 0; +} + +psS32 testGetOffsetSphere( void ) +{ + psSphere* position1 = psSphereAlloc(); + psSphere* position2 = psSphereAlloc(); + psSphere *offset = NULL; + + position1->r = DEG_TO_RAD(90.0); + position1->d = DEG_TO_RAD(45.0); + position1->rErr = 0.0; + position1->dErr = 0.0; + + for (psF64 r = 0.0; r < 180.0;r += DEG_INC) { + for (psF64 d = 0.0;d < 90.0; d += DEG_INC) { + position2->r = DEG_TO_RAD(r); + position2->d = DEG_TO_RAD(d); + position2->rErr = 0.0; + position2->dErr = 0.0; + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_RADIAN); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 1); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 1); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_DEGREE); + offset->r = DEG_TO_RAD(offset->r); + offset->d = DEG_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_ARCMIN); + offset->r = MIN_TO_RAD(offset->r); + offset->d = MIN_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + + offset = psSphereGetOffset( position1, position2, + PS_SPHERICAL, PS_ARCSEC); + offset->r = SEC_TO_RAD(offset->r); + offset->d = SEC_TO_RAD(offset->d); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->r, (position2->r - position1->r), 2); + PS_COMPARE_TINY_THEN_PRINT_ERROR(offset->d, (position2->d - position1->d), 3); + psFree(offset); + } + } + + // Attempt to invoke function with null position 1 parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null position"); + offset = psSphereGetOffset(NULL, position2, PS_LINEAR, 0); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 10; + } + + // Attempt to invoke function with null position 2 parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for null position"); + offset = psSphereGetOffset(position1, NULL, PS_LINEAR, 0); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 11; + } + + // Attempt to invoke function with invalid mode + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid mode"); + offset = psSphereGetOffset(position1, position2, 0x54321, 0); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 12; + } + + // Attempt to invoke function with invalid unit type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid unit type"); + offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, 0x54321); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 13; + } + + // Attempt to invoke function with coordinate 1 declination value 90.0 degree + position1->d = DEG_TO_RAD(90.0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate warning message"); + offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, PS_RADIAN); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 14; + } + + // Attempt to invoke function with coordinate 2 declination value 90.0 degree + position1->d = DEG_TO_RAD(45.0); + position2->d = DEG_TO_RAD(90.0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate warning message"); + offset = psSphereGetOffset(position1, position2, PS_SPHERICAL, PS_RADIAN); + if (offset != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 15; + } + + psFree(position1); + psFree(position2); + + return 0; +} + +psS32 testGetOffsetLinear(void) +{ + psSphere* coord1 = psSphereAlloc(); + psSphere* coord2 = psSphereAlloc(); + psSphere* out = NULL; + + for(psS32 i = 0; i < TESTPOINTS_OFFSET; i++) { + + coord1->r = getOffsetTestpoint1[i][0]; + coord1->d = getOffsetTestpoint1[i][1]; + + coord2->r = getOffsetTestpoint2[i][0]; + coord2->d = getOffsetTestpoint2[i][1]; + + out = psSphereGetOffset(coord1, coord2, PS_LINEAR, PS_RADIAN); + + if(fabs(out->r - getOffsetResult[i][0]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d: Result out->r = %lg not equal to expected %lg", + i, out->r, getOffsetResult[i][0]); + return i*10+1; + } + if(fabs(out->d - getOffsetResult[i][1]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Testpoint %d: Result out->d = %lg not equal to expected %lg", + i,out->d, getOffsetResult[i][1]); + return i*10+2; + } + + psFree(out); + } + + psFree(coord1); + psFree(coord2); + + return 0; +} + +#define DEG_INC2 15.0 +#define VERBOSE 0 +psS32 testProjectTanDeProjectTan() +{ + psS32 rc = 0; + // + // I'm not convinced that the p_psProject() and p_psDeproject() functions work + // correctly. If we project a set of coordinates over a wide range of (R, D) + // values, then deproject them, the original (R, D) values are only produced + // when D is larger than 0. This code demonstrates that. + // + psProjection *tmpProj = psProjectionAlloc(0.0,0.0,10.0,10.0,PS_PROJ_TAN); + if (1) { //HEY + psPlane planeCoord01; + psSphere skyCoord01; + psSphere skyCoord02; + for (psF32 R = -90.0 ; R <= 90.0 ; R+= DEG_INC2) { + for (psF32 D = -90.0 ; D <= 90.0 ; D+= DEG_INC2) { + if ((fabs(R) != 90.0) && (fabs(D) != 90.0)) { + skyCoord01.r = DEG_TO_RAD(R); + skyCoord01.d = DEG_TO_RAD(D); + p_psProject(&planeCoord01, &skyCoord01, tmpProj); + p_psDeproject(&skyCoord02, &planeCoord01, tmpProj); + if ((fabs(skyCoord01.r - skyCoord02.r) < FLT_EPSILON) && + (fabs(skyCoord01.d - skyCoord02.d) < FLT_EPSILON)) { + if (VERBOSE) { + printf("CORRECT: (%.2fr %.2fd) (%.2fr %.2fd) -> (%.2f %.2f) -> (%.2fr %.2fd)\n", R, D, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d); + } + rc = 1; + } else { + printf("TEST ERROR: (%.2fr %.2fd) (%.2fr %.2fd) -> (%.2f %.2f) -> (%.2fr %.2fd)\n", R, D, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d); + rc = 1; + } + } + } + } + } + return(rc); +} + + + Index: /branches/rel-1-1/psLib/test/astro/tst_psCoord02.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psCoord02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psCoord02.c (revision 12167) @@ -0,0 +1,572 @@ +/** @file tst_psCoord02.c +* +* @brief This file contains test code for: +* +* @author GLG, MHPCC +* +* @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-17 03:24:46 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 test04( void ); +static psS32 test05( void ); +static psS32 test06( void ); +static psS32 test07( void ); + +testDescription tests[] = { + {test04, 660, "psPlaneTransformCombine()", 0, false}, + {test05, 662, "psPlaneTransformFit()", 0, false}, + {test06, 663, "psPlaneTransformInvert()", 0, false}, + {test07, 666, "psPlaneTransformDeriv()", 0, false}, + {NULL} + }; + +#define PS_PERCENT_COMPARE(X, Y, PERCENT_FRACTION) (fabs((Y)-(X))/fabs(X) < (PERCENT_FRACTION)) + +//#define PS_GEN_RAN_FLOAT (-1.0 + (psF32) (rand() % 2)) +#define PS_GEN_RAN_FLOAT (-0.5 + ((psF32)rand()) / ((psF32) RAND_MAX)) +#define RANDOM_SEED 1995 + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psPlaneTransformCombine", 0); + psTraceSetLevel("multiplyDPoly2D", 0); + srand(RANDOM_SEED); + + return ( ! runTestSuite( stderr, "psImage", tests, argc, argv ) ); +} + + +/****************************************************************************** +TEST04: The strategy behind test04() is to generate a pair of transforms t1 +and t2 with a wide variety of sizes for the x/y components of the x/y +transforms, then set the coefficients of t1/t2 to arbitray values, then +generate a new transform t3 via psPlaneTransformCombine() function. Then, for +several arbitrary input plane coordinates, we tarnsform them via the new +transform t3, as well as individually via t1 then t2, and verify that they +produce identical output coordinates. + *****************************************************************************/ +// These macros determine the number of x/y test points which will be x-formed. +#define TST04_X_MIN 0.0 +#define TST04_X_MAX 10.0 +#define TST04_Y_MIN 0.0 +#define TST04_Y_MAX 10.0 +#define TST04_NUM 5.0 +// These macros define the max sizes of the various input transforms. +#define TST04_T1_X_X 2 +#define TST04_T1_X_Y 3 +#define TST04_T1_Y_X 3 +#define TST04_T1_Y_Y 3 +#define TST04_T2_X_X 3 +#define TST04_T2_X_Y 3 +#define TST04_T2_Y_X 3 +#define TST04_T2_Y_Y 3 +/****************************************************************************** +tstTransforms(t1, t2, t3): this function generates a set of arbitrary x/y +coordinates, then transforms them into output coordinates via the t3 +transform, as well as the t1 followed by the t2 transform. It verifies the +output coordinates are identical and returns TRUE if so. Otherwise, it prints +an error message and returns FALSE. + *****************************************************************************/ +bool tstTransforms(psPlaneTransform *t1, psPlaneTransform *t2, psPlaneTransform *t3) +{ + bool testStatus = true; + psPlane *in = psPlaneAlloc(); + in->xErr = 0.0; + in->yErr = 0.0; + + for (in->x = TST04_X_MIN ; in->x <= TST04_X_MAX ; in->x+= (TST04_X_MAX-TST04_X_MIN) / TST04_NUM) { + for (in->y = TST04_Y_MIN ; in->y <= TST04_Y_MAX ; in->y+= (TST04_Y_MAX-TST04_Y_MIN) / TST04_NUM) { + // Apply the t1/t2 transforms individually to the in coords. + psPlane *mid = psPlaneTransformApply(NULL, t1, in); + if (mid == NULL) { + printf("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(in); + return(false); + } + + psPlane *outT1T2 = psPlaneTransformApply(NULL, t2, mid); + if (outT1T2 == NULL) { + printf("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(mid); + return(false); + } + + // Apply the t3 transforms individually to the in coords. + psPlane *outT3 = psPlaneTransformApply(NULL, t3, in); + if (outT3 == NULL) { + printf("TEST ERROR: intermediate psPlane coords are NULL.\n"); + psFree(mid); + psFree(outT1T2); + return(false); + } + + // Verify that the results are identical. + if (!PS_PERCENT_COMPARE(outT3->x, outT1T2->x, 0.01)) { + printf("TEST ERROR: x is %f, should be %f\n", outT3->x, outT1T2->x); + testStatus = false; + } + // Verify that the results are identical. + if (!PS_PERCENT_COMPARE(outT3->y, outT1T2->y, 0.01)) { + printf("TEST ERROR: y is %f, should be %f\n", outT3->y, outT1T2->y); + testStatus = false; + } + if (0) { + if (fabs(outT3->x - outT1T2->x) > FLT_EPSILON) { + printf("TEST ERROR: x is %f, should be %f\n", outT3->x, outT1T2->x); + testStatus = false; + printf("(in->x, in->y) is (%f, %f)\n", in->x, in->y); + printf("(mid->x, mid->y) is (%f, %f)\n", mid->x, mid->y); + printf("(outT1T2->x, outT1T2->y) is (%f, %f)\n", outT1T2->x, outT1T2->y); + printf("(outT3->x, outT3->y) is (%f, %f)\n", outT3->x, outT3->y); + PS_POLY_PRINT_2D(t1->x); + PS_POLY_PRINT_2D(t1->y); + PS_POLY_PRINT_2D(t2->x); + PS_POLY_PRINT_2D(t2->y); + PS_POLY_PRINT_2D(t3->x); + PS_POLY_PRINT_2D(t3->y); + } + if (fabs(outT3->y - outT1T2->y) > FLT_EPSILON) { + printf("TEST ERROR: y is %f, should be %f\n", outT3->y, outT1T2->y); + testStatus = false; + printf("(in->x, in->y) is (%f, %f)\n", in->x, in->y); + printf("(mid->x, mid->y) is (%f, %f)\n", mid->x, mid->y); + printf("(outT1T2->x, outT1T2->y) is (%f, %f)\n", outT1T2->x, outT1T2->y); + printf("(outT3->x, outT3->y) is (%f, %f)\n", outT3->x, outT3->y); + PS_POLY_PRINT_2D(t1->x); + PS_POLY_PRINT_2D(t1->y); + PS_POLY_PRINT_2D(t2->x); + PS_POLY_PRINT_2D(t2->y); + PS_POLY_PRINT_2D(t3->x); + PS_POLY_PRINT_2D(t3->y); + } + } + psFree(mid); + psFree(outT1T2); + psFree(outT3); + } + } + + psFree(in); + return(testStatus); +} + +/****************************************************************************** +setCoeffs(t1, t2): this function sets the coefficients of the t1 and t2 +transforms to somewhat arbitrary values. + *****************************************************************************/ +int setCoeffs(psPlaneTransform *t1, psPlaneTransform *t2) +{ + for (psS32 t1xx = 0 ; t1xx < t1->x->nX+1 ; t1xx++) { + for (psS32 t1xy = 0 ; t1xy < t1->x->nY+1 ; t1xy++) { + t1->x->coeff[t1xx][t1xy] = PS_GEN_RAN_FLOAT; + //printf("%f\n", t1->x->coeff[t1xx][t1xy]); + } + } + + for (psS32 t1yx = 0 ; t1yx < t1->y->nX+1 ; t1yx++) { + for (psS32 t1yy = 0 ; t1yy < t1->y->nY+1 ; t1yy++) { + t1->y->coeff[t1yx][t1yy] = PS_GEN_RAN_FLOAT; + //printf("%f\n", t1->y->coeff[t1yx][t1yy]); + } + } + for (psS32 t2xx = 0 ; t2xx < t2->x->nX+1 ; t2xx++) { + for (psS32 t2xy = 0 ; t2xy < t2->x->nY+1 ; t2xy++) { + t2->x->coeff[t2xx][t2xy] = PS_GEN_RAN_FLOAT; + //printf("%f\n", t2->x->coeff[t2xx][t2xy]); + } + } + for (psS32 t2yx = 0 ; t2yx < t2->y->nX+1 ; t2yx++) { + for (psS32 t2yy = 0 ; t2yy < t2->y->nY+1 ; t2yy++) { + t2->y->coeff[t2yx][t2yy] = PS_GEN_RAN_FLOAT; + //printf("%f\n", t2->y->coeff[t2yx][t2yy]); + } + } + + return(0); +} + +/****************************************************************************** +test04(): We test psPlaneTransformCombine() with a variety of input +transforms, as well as input coordinates, as well as erroneous input +parameters. + *****************************************************************************/ +psS32 test04( void ) +{ + bool testStatus = true; + + //HEY + // Create a variety of input transforms, then test them. + // + for (psS32 t1xx = 0 ; t1xx < TST04_T1_X_X ; t1xx++) { + for (psS32 t1xy = 0 ; t1xy < TST04_T1_X_Y ; t1xy++) { + for (psS32 t1yx = 0 ; t1yx < TST04_T1_Y_X ; t1yx++) { + for (psS32 t1yy = 0 ; t1yy < TST04_T1_Y_Y ; t1yy++) { + for (psS32 t2xx = 0 ; t2xx < TST04_T2_X_X ; t2xx++) { + for (psS32 t2xy = 0 ; t2xy < TST04_T2_X_Y ; t2xy++) { + for (psS32 t2yx = 0 ; t2yx < TST04_T2_Y_X ; t2yx++) { + for (psS32 t2yy = 0 ; t2yy < TST04_T2_Y_Y ; t2yy++) { + //printf("(%d %d %d %d %d %d %d %d)\n", t1xx, t1xy, t1yx, t1yy, t2xx, t2xy, t2yx, t2yy); + psPlaneTransform *trans1 = psPlaneTransformAlloc(PS_MAX(t1xx, t1yx), PS_MAX(t1xy, t1yy)); + psPlaneTransform *trans2 = psPlaneTransformAlloc(PS_MAX(t2xx, t2yx), PS_MAX(t2xy, t2yy)); + psPlaneTransform *trans3 = NULL; + setCoeffs(trans1, trans2); + trans3 = psPlaneTransformCombine(NULL, trans1, + trans2, psRegionSet(NAN,NAN,NAN,NAN), 0); + //XXX: the last two parameters are bogus. Needs to change. -rdd + + if (trans3 == NULL) { + printf("TEST ERROR: psPlaneTransformCombine() returned NULL/\n"); + testStatus = false; + } else { + testStatus = tstTransforms(trans1, trans2, trans3); + } + psFree(trans1); + psFree(trans2); + psFree(trans3); + } + } + } + } + } + } + } + } + + + // + // Test erroneous input parameter combinations + // + psPlaneTransform *trans1 = psPlaneTransformAlloc(2, 2); + psPlaneTransform *trans2 = psPlaneTransformAlloc(2, 2); + psPlaneTransform *trans3 = NULL; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformCombine with NULL trans1. Should generate error and return NULL.\n"); + trans3 = psPlaneTransformCombine(NULL, NULL, trans2, psRegionSet(0,0,0,0), 10); + if (trans3 != NULL) { + printf("TEST ERROR: psPlaneTransformCombine() returned a non-NULL psPlaneTransform.\n"); + testStatus = false; + psFree(trans3); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformCombine with NULL trans2. Should generate error and return NULL.\n"); + trans3 = psPlaneTransformCombine(NULL, trans1, NULL, psRegionSet(0,0,0,0), 10); + if (trans3 != NULL) { + printf("TEST ERROR: psPlaneTransformCombine() returned a non-NULL psPlaneTransform.\n"); + testStatus = false; + psFree(trans3); + } + + psFree(trans1); + psFree(trans2); + return(!testStatus); +} + + +#define TST05_X_MIN 0.0 +#define TST05_X_MAX 10.0 +#define TST05_Y_MIN 0.0 +#define TST05_Y_MAX 10.0 +#define TST05_NUM_X 5.0 +#define TST05_NUM_Y 5.0 +#define TST05_X_POLY_ORDER 3 +#define TST05_Y_POLY_ORDER 3 +#define TST05_NUM_DATA (TST05_NUM_X * TST05_NUM_Y) +#define TST05_IGNORE 1 +#define TST05_VERBOSE 0 +/****************************************************************************** +XXX: This is only a rudimentary test of the psPlaneTransformFit() function. +It tests a few NULL input parameter conditions, and some simple linear +transformations. + +// HEY + *****************************************************************************/ +psS32 test05( void ) +{ + bool testStatus = true; + psPlaneTransform *trans = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psPlaneTransform *transInit = psPlaneTransformAlloc(TST05_X_POLY_ORDER, TST05_Y_POLY_ORDER); + psArray *src = psArrayAlloc((int) TST05_NUM_DATA); + psArray *dst = psArrayAlloc((int) TST05_NUM_DATA); + bool rc; + + // + // We set an arbitrary non-linear transformation. + // + for (psS32 x = 0 ; x < TST05_X_POLY_ORDER+1 ; x++) { + for (psS32 y = 0 ; y < TST05_Y_POLY_ORDER+1 ; y++) { + transInit->x->coeff[x][y] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + transInit->y->coeff[x][y] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + } + } + if (TST05_VERBOSE) { + PS_POLY_PRINT_2D(transInit->x); + PS_POLY_PRINT_2D(transInit->y); + } + + // + // We generate a grid of input data points in the x1,y1 plane, calculate the + // corresponding values in the transformed plane, and set these to + // the src and dst psVectors. + // + psS32 i = 0; + for (psF32 x = TST05_X_MIN ; x < TST05_X_MAX ; x+= (TST05_X_MAX-TST05_X_MIN)/TST05_NUM_X) { + for (psF32 y = TST05_Y_MIN ; y < TST05_Y_MAX ; y+= (TST05_Y_MAX-TST05_Y_MIN)/TST05_NUM_Y) { + if (i == src->n) { + if (src->n == src->nalloc) { + src = psArrayRealloc(src, src->n+1); + } + src->n++; + } + if (i == dst->n) { + if (dst->n == dst->nalloc) { + dst = psArrayRealloc(dst, dst->n+1); + } + dst->n++; + } + src->data[i] = (psPtr *) psPlaneAlloc(); + ((psPlane *) src->data[i])->x = x; + ((psPlane *) src->data[i])->y = y; + + dst->data[i] = psPlaneTransformApply(NULL, transInit, ((psPlane *) src->data[i])); + i++; + } + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformFit with NULL trans. Should generate error and return NULL.\n"); + rc = psPlaneTransformFit(NULL, src, dst, 100, 100.0); + if (rc == true) { + printf("TEST ERROR1: psPlaneTransformFit() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformFit with NULL src psArray. Should generate error and return NULL.\n"); + rc = psPlaneTransformFit(trans, NULL, dst, 100, 100.0); + if (rc == true) { + printf("TEST ERROR2: psPlaneTransformFit() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformFit with NULL dst psArray. Should generate error and return NULL.\n"); + rc = psPlaneTransformFit(trans, src, NULL, 100, 100.0); + if (rc == true) { + printf("TEST ERROR3: psPlaneTransformFit() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformFit with acceptable data.\n"); + rc = psPlaneTransformFit(trans, src, dst, 100, 100.0); + if (rc != true) { + printf("TEST ERROR4: psPlaneTransformFit() returned FALSE.\n"); + testStatus = false; + } else { + if (TST05_VERBOSE) { + PS_POLY_PRINT_2D(trans->x); + PS_POLY_PRINT_2D(trans->y); + } + + // + // For the initial grid of input points, we transform them to output points with + // the derived transformation, and verify that they are within 10%. + // + + for (psS32 i = TST05_IGNORE ; i < src->n-TST05_IGNORE ; i++) { + psPlane *inData = (psPlane *) src->data[i]; + psPlane *outData = (psPlane *) dst->data[i]; + psPlane *outDataDeriv = psPlaneTransformApply(NULL, trans, inData); + if (!PS_PERCENT_COMPARE(outDataDeriv->x, outData->x, 0.20) || + !PS_PERCENT_COMPARE(outDataDeriv->y, outData->y, 0.20)) { + printf("TEST ERROR: the derived output coords (%d) were (%.2f, %.2f) should have been (%.2f, %.2f).\n", + i, outDataDeriv->x, outDataDeriv->y, outData->x, outData->y); + testStatus = false; + } else if (TST05_VERBOSE) { + printf("GOOD: the derived output coords (%d) were (%.2f, %.2f) should have been (%.2f, %.2f).\n", + i, outDataDeriv->x, outDataDeriv->y, outData->x, outData->y); + } + psFree(outDataDeriv); + } + } + + psFree(transInit); + psFree(trans); + psFree(src); + psFree(dst); + + return(!testStatus); +} + +#define NUM_TRANSFORMS 100 +/****************************************************************************** +This is only a rudimentary test of the psPlaneTransformInvert() function. +It tests: + A few NULL input parameter conditions. + Several random linear transformations. +XXX: Must extensively test: + Non-linear transformations. + *****************************************************************************/ +psS32 test06( void ) +{ + bool testStatus = true; + psPlaneTransform *trans = psPlaneTransformAlloc(1, 1); + psPlaneTransform *transInverse = NULL; + psRegion myRegion = psRegionSet(1.0, 5.0, 1.0, 5.0); + + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[0][1] = 1.0; + trans->x->coeff[1][0] = 2.0; + trans->x->coeff[1][1] = 3.0; + trans->y->coeff[0][0] = 4.0; + trans->y->coeff[0][1] = 5.0; + trans->y->coeff[1][0] = 6.0; + trans->y->coeff[1][1] = 7.0; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformInvert with NULL trans. Should generate error and return NULL.\n"); + transInverse = psPlaneTransformInvert(NULL, NULL, myRegion, 10); + if (transInverse != NULL) { + printf("TEST ERROR: psPlaneTransformInvert() returned a non-NULL psPlaneTransform.\n"); + testStatus = false; + psFree(transInverse); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling psPlaneTransformInvert with zero nSamples. Should generate error and return NULL.\n"); + transInverse = psPlaneTransformInvert(NULL, trans, myRegion, 0); + if (transInverse != NULL) { + printf("TEST ERROR: psPlaneTransformInvert() returned a non-NULL psPlaneTransform.\n"); + testStatus = false; + psFree(transInverse); + } + + printf("Calling psPlaneTransformInvert with acceptable linear transformations.\n"); + for (psS32 n = 0 ; n < NUM_TRANSFORMS ; n++) { + if (n == 0) { + // I ensure that we test the identity transformation since this was + // giving us probs before. + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[0][1] = 0.0; + trans->x->coeff[1][0] = 1.0; + trans->x->coeff[1][1] = 0.0; + trans->y->coeff[0][0] = 0.0; + trans->y->coeff[0][1] = 1.0; + trans->y->coeff[1][0] = 0.0; + trans->y->coeff[1][1] = 0.0; + } else { + // We create a random linear transformation and hope it is invertible. + trans->x->coeff[0][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[0][1] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[1][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->x->coeff[1][1] = 0.0; + trans->y->coeff[0][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[0][1] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[1][0] = (psF32)rand() / (psF32)RAND_MAX * 10.0f; + trans->y->coeff[1][1] = 0.0; + } + + transInverse = psPlaneTransformInvert(NULL, trans, myRegion, 10); + if (transInverse == NULL) { + printf("TEST ERROR: psPlaneTransformInvert() returned a NULL psPlaneTransform.\n"); + testStatus = false; + } + // + // Transform the "in" coords to "mid" with psPlaneTransform "trans", then + // transform "mid" to "out" with psPlaneTransform "transInverse". + // + // XXX: Loop on a few data points. + // + psPlane *in = psPlaneAlloc(); + in->x = 2.0; + in->y = 3.0; + psPlane *mid = psPlaneTransformApply(NULL, trans, in); + psPlane *out = psPlaneTransformApply(NULL, transInverse, mid); + + if (((fabs(in->x - out->x) > FLT_EPSILON)) || + ((fabs(in->y - out->y) > FLT_EPSILON)) || + isnan(out->x) || + isnan(out->y)) { + printf("TEST ERROR: in coords were (%f, %f), out coords were (%f, %f).\n", + in->x, in->y, out->x, out->y); + testStatus = false; + } + + psFree(in); + psFree(mid); + psFree(out); + psFree(transInverse); + } + + psFree(trans); + + fflush(stdout); + + return(!testStatus); +} + +psS32 test07( void ) +{ + psPlane *coord = psPlaneAlloc(); + psPlane *deriv = NULL; + psPlaneTransform *trans = NULL; + + //Set fxn values for evaluation + coord->x = 3.0; + coord->y = 1.0; + + //Return NULL for NULL input plane transform + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + deriv = psPlaneTransformDeriv(NULL, trans, coord); + if (deriv != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psPlaneTransformDeriv failed to return NULL for NULL plane transform input.\n"); + return 1; + } + + trans = psPlaneTransformAlloc(1, 3); + + //Set Polynomials. f(x) = x, f(y) = 0.5*y^2 --> f'(x) = 1, f'(y) = y + //So for 1,1 -> f'(1) = 1, f'(1) = 1 + trans->x->coeff[0][0] = 0.0; + trans->x->coeff[1][0] = 1.0; + trans->y->coeff[0][0] = 0.0; + trans->y->coeff[0][1] = 0.0; + trans->y->coeff[0][2] = 0.5; + + //Return NULL for NULL input plane + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + deriv = psPlaneTransformDeriv(NULL, trans, NULL); + if (deriv != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psPlaneTransformDeriv failed to return NULL for NULL plane input.\n"); + return 2; + } + + //Return correct values. Should have x=1.0, y=1.0. + deriv = psPlaneTransformDeriv(NULL, trans, coord); + if (deriv->x != 1.0 || deriv->y != 1.0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPlaneTransformDeriv failed to return the correct values.\n"); + printf("\n f' values are = %lf, %lf \n", deriv->x, deriv->y); + return 3; + } + + psFree(trans); + psFree(deriv); + psFree(coord); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/astro/tst_psEarthOrientation.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psEarthOrientation.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psEarthOrientation.c (revision 12167) @@ -0,0 +1,1205 @@ +/** @file tst_psEarthOrientation.c +* +* @brief The code will perform earth orientation calculations and sphere rotations. +* +* @author d-Rob, MHPCC +* +* @version $Revision: 1.35 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-26 01:23:41 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + + +static psS32 testAberration(void); +static psS32 testGravityDeflect(void); +static psS32 testEOCPrecession(void); +static psS32 testEOCPrecessionCorr(void); +static psS32 testEOCPolar(void); +static psS32 testEOCPolarTide(void); +static psS32 testEOCNutation(void); +static psS32 testSphereRot_TEOtoCEO(void); +static psS32 testSphereRot_CEOtoGCRS(void); +static psS32 testSphereRot_ITRStoTEO(void); +static psS32 testSphereRotPrecess(void); + +testDescription tests[] = { + {testAberration, 666, "psAberration()", 0, false}, + {testGravityDeflect, 667, "psGravityDeflect()", 0, false}, + {testEOCPrecession, 669, "psEOCPrecession()", 0, false}, + {testEOCPrecessionCorr, 670, "psEOCPrecessionCorr()", 0, false}, + {testEOCPolar, 671, "psEOCPolar()", 0, false}, + {testEOCPolarTide, 672, "psEOCPolarTide()", 0, false}, + {testEOCNutation, 673, "psEOCNutation()", 0, false}, + {testSphereRot_TEOtoCEO, 674, "psSphereRot_TEOtoCEO()", 0, false}, + {testSphereRot_CEOtoGCRS, 675, "psSphereRot_CEOtoGCRS()", 0, false}, + {testSphereRot_ITRStoTEO, 676, "psSphereRRot_ITRStoTEO()", 0, false}, + {testSphereRotPrecess, 677, "psSphereRotPrecess()", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + // Initialize library internal structures + psLibInit("pslib.config"); + + if( !runTestSuite(stderr,"psEarthOrientation",tests,argc,argv)) { + return 1; + } + + // Cleanup library + psLibFinalize(); + + return 0; + + // return ( ! runTestSuite( stderr, "psEarthOrientation", tests, argc, argv ) ); +} + +#define timesec 1049160600 +#define objR DEG_TO_RAD(122.9153182445501) +#define objD DEG_TO_RAD(48.562968978679194) +#define VERBOSE 0 +static psSphere *obj = NULL; +static void objSetup(void); +static double greatCircle(psSphere *in1, psSphere *in2); + +static void objSetup(void) +{ + if (obj == NULL) { + // obj = psSphereAlloc(); + // obj->r = objR; + // obj->d = objD; + psCube *tempCube = psCubeAlloc(); + tempCube->x = -0.3598480726985338; + tempCube->y = 0.5555012823608123; + tempCube->z = 0.7496183628158023; + obj = psCubeToSphere(tempCube); + psFree(tempCube); + } +} + +//returns the great circle ANGULAR distance between 2 positions (psSphere's) +static double greatCircle(psSphere *in1, psSphere *in2) +{ + double r1, r2, d1, d2; + d1 = in1->r; + d2 = in2->r; + r1 = in1->d; + r2 = in2->d; + double out = 0.0; + double c1, c2, cd, s1, s2, sum, ac; + c1 = cos(r1); + c2 = cos(r2); + cd = cos(d1-d2); + s1 = sin(r1); + s2 = sin(r2); + sum = c1*c2*cd + s1*s2; + if (sum > 1.0) + sum = 1.0 - (sum - 1.0); + + ac = acos(sum); + out = ac; + // printf("\n c1=%lf, c2=%lf, cd=%lf, s1=%lf, s2=%lf, sum=%.19g, ac=%g\n", c1,c2,cd,s1,s2,sum,ac); + // out = acos(cos(r1)*cos(r2)*cos(d1-d2) + sin(r1)*sin(r2)); + // if (out != 0.0) printf("\n in greatCircle, out = %lf\n", out); + return out; +} + +psS32 testAberration(void) +{ + psSphere *apparent = NULL; + psSphere *empty = NULL; + psCube *actualCube = psCubeAlloc(); + //values from After gravity deflection// + actualCube->x = -0.35961949760293604; + actualCube->y = 0.5555613950298085; + actualCube->z = 0.7496835020836093; + psSphere *actual = psCubeToSphere(actualCube); + psCube *cubeDir = psCubeAlloc(); + cubeDir->x = 5148.713262821658; + cubeDir->y = -26945.04752348012; + cubeDir->z = -11682.787302030947; + cubeDir->x += -357.6031690489248; + cubeDir->y += 248.46429758174693; + cubeDir->z += 0.09694774143797581; + psSphere *direction = psCubeToSphere(cubeDir); + double speed = sqrt(cubeDir->x*cubeDir->x + cubeDir->y*cubeDir->y + cubeDir->z*cubeDir->z); + double c = 299792458.0; // Speed of light in vacuum (src:NIST) /* m/s */ + speed /= c; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + empty = psAberration(empty, apparent, direction, speed); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psAberration failed to return NULL for NULL actual input.\n"); + return 1; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + empty = psAberration(empty, actual, apparent, speed); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psAberration failed to return NULL for NULL direction input.\n"); + return 2; + } + + apparent = psAberration(apparent, actual, direction, speed); + psCube *outCube = psSphereToCube(apparent); + if (VERBOSE) { + printf("\n -- resultCube = x,y,z = %.13g, %.13g, %.13g -- \n", + outCube->x, outCube->y, outCube->z); + } + //expected cube values + double x, y, z; + x = -0.35963388069046304; + y = 0.5555192509816625; + z = 0.7497078321908413; + + if (VERBOSE) { + printf(" -- expectedCube = x,y,z = %.13g, %.13g, %.13g -- \n", x, y, z); + printf("Cube Difference = x,y,z = %.13g, %.13g, %.13g \n\n", + (x - outCube->x), (y - outCube->y), (z - outCube->z) ); + } + psFree(actual); + actualCube->x = x; + actualCube->y = y; + actualCube->z = z; + actual = psCubeToSphere(actualCube); + double xxx = greatCircle(actual, apparent); + if (VERBOSE) { + printf(" The great circle angular distance between expected & result = %.13g\n", + xxx); + } + if ( fabs(x - outCube->x) > FLT_EPSILON || fabs(y - outCube->y) > FLT_EPSILON || + fabs(z - outCube->z) > FLT_EPSILON ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psAberration returned incorrect values.\n"); + // printf("\nMagnitude of expected change = x,y,z = %.13g, %.13g, %.13g \n", + // (actualCube->x - x), (actualCube->y - y), (actualCube->z - z) ); + // printf("Magnitude of actual change = x,y,z = %.13g, %.13g, %.13g \n", + // (actualCube->x - outCube->x), (actualCube->y - outCube->y), + // (actualCube->z - outCube->z) ); + psFree(actual); + actualCube->x = x; + actualCube->y = y; + actualCube->z = z; + actual = psCubeToSphere(actualCube); + x = greatCircle(actual, apparent); + if (VERBOSE) { + printf(" The great circle angular distance between expected & result = %.13g\n", + x); + } + return 3; + } + + psFree(outCube); + psFree(actualCube); + psFree(cubeDir); + psFree(apparent); + psFree(actual); + psFree(direction); + + return 0; +} + +psS32 testGravityDeflect(void) +{ + psSphere *apparent = NULL; + psSphere *empty = NULL; + psCube *actualCube = psCubeAlloc(); + actualCube->x = -0.3596195125758298; + actualCube->y = 0.5555613903455866; + actualCube->z = 0.7496834983724809; + psSphere *actual = psCubeToSphere(actualCube); + psCube *sunCube = psCubeAlloc(); + sunCube->x = 1.467797790127511e11; + sunCube->y = 2.5880956908748722e10; + sunCube->z = 1.1220046291457653e10; + double sunLength = sqrt(sunCube->x*sunCube->x + sunCube->y*sunCube->y + sunCube->z*sunCube->z); + sunCube->x /= sunLength; + sunCube->y /= sunLength; + sunCube->z /= sunLength; + if (VERBOSE) { + printf("sunCube = x,y,z = %.13g, %.13g, %.13g\n", + sunCube->x, sunCube->y, sunCube->z); + } + psSphere *sun = psCubeToSphere(sunCube); + if (VERBOSE) { + printf("sunSphere = r, d = %.13g, %.13g\n", sun->r, sun->d); + } + psCube *outCube = psCubeAlloc(); + + empty = psGravityDeflection(apparent, empty, sun); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psGravityDeflection Failed to return NULL for NULL actual input sphere.\n"); + return 1; + } + empty = psGravityDeflection(apparent, actual, empty); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psGravityDeflection Failed to return NULL for NULL sun input sphere.\n"); + return 2; + } + + apparent = psGravityDeflection(NULL, actual, sun); + // apparent->r *= -1.0; + // apparent->d *= -1.0; + psSphere *result2; + // psSphere *result2 = psSphereSetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + // psSphere *result = psSphereSetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + // psSphere *result = psSphereGetOffset(apparent, actual, PS_SPHERICAL, PS_RADIAN); + if (VERBOSE) { + printf(" -- actualCube = x,y,z = %.13g, %.13g, %.13g -- \n", + actualCube->x, actualCube->y, actualCube->z); + } + // psCube *outCube = psSphereToCube(result); + // printf(" -- resultCube = x,y,z = %.13g, %.13g, %.13g -- \n", + // outCube->x, outCube->y, outCube->z); + psCube *outCube2 = psSphereToCube(apparent); + if (VERBOSE) { + printf(" -- resultCube2= x,y,z = %.13g, %.13g, %.13g -- \n", + outCube2->x, outCube2->y, outCube2->z); + } + double x, y, z; + x = -0.35961949760293604; + y = 0.5555613950298085; + z = 0.7496835020836093; + + if (VERBOSE) { + printf(" -- expectCube = x,y,z = %.13g, %.13g, %.13g -- \n\n", x, y, z); + + // if ( fabs(x - outCube->x) > DBL_EPSILON || fabs(y - outCube->y) > DBL_EPSILON || + // fabs(z - outCube->z) > DBL_EPSILON ) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // "psGravityDeflection returned incorrect values.\n"); + printf("expect-actual= x,y,z = %.13g, %.13g, %.13g \n", + (x - actualCube->x), (y - actualCube->y), (z - actualCube->z) ); + printf("expect-result= x,y,z = %.13g, %.13g, %.13g \n", + (x - outCube2->x), (y - outCube2->y), (z - outCube2->z) ); + printf("result-actual= x,y,z = %.13g, %.13g, %.13g \n", + (outCube2->x - actualCube->x), (outCube2->y - actualCube->y), + (outCube2->z - actualCube->z) ); + } + // return 1; + // } + // psFree(result2); + outCube2->x = x; + outCube2->y = y; + outCube2->z = z; + result2 = psCubeToSphere(outCube2); + // psFree(result); + psSphere *result = psSphereGetOffset(actual, result2, PS_SPHERICAL, PS_RADIAN); + psFree(result2); + result2 = psSphereGetOffset(actual, apparent, PS_SPHERICAL, PS_RADIAN); + if (VERBOSE) { + printf("The apparent output sphere = r,d = %.13g, %.13g\n", result2->r, result2->d); + printf("The expected output sphere = r,d = %.13g, %.13g\n\n", result->r, result->d); + } + psFree(result2); + + psFree(outCube); + psFree(outCube2); + psFree(sunCube); + psFree(actualCube); + psFree(result); + psFree(actual); + psFree(apparent); + psFree(sun); + + return 0; +} + +psS32 testEOCPrecession(void) +{ + psTime *empty = NULL; + psTime *time = psTimeAlloc(PS_TIME_UTC); + time->sec = timesec; + time->nsec = 0; + time->leapsecond = false; + + //Tests for Precession Model // + psEarthPole *pmodel = NULL; + //Return NULL for NULL time input + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + pmodel = psEOC_PrecessionModel(empty); + if (pmodel != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionModel failed to return NULL for NULL time input.\n"); + return 1; + } + //Return NULL for UT1 time input + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + psTime *UT1time = psTimeAlloc(PS_TIME_UT1); + pmodel = psEOC_PrecessionModel(UT1time); + if (pmodel != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionModel failed to return NULL for UT1 input time.\n"); + return 2; + } + psFree(UT1time); + //Check return values from valid precession input + pmodel = psEOC_PrecessionModel(time); + if ( pmodel == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PrecessionModel returned NULL for valid input.\n"); + return 3; + } else { + double x, y, s; + x = 2.857175590089105e-4; + y = 2.3968739377734732e-5; + s = -1.3970066457904322e-8; + if ( fabs(pmodel->x - x) > FLT_EPSILON || fabs(pmodel->y - y) > FLT_EPSILON + || fabs(pmodel->s - s) > FLT_EPSILON) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + " psEOC_PrecessionModel return incorrect values.\n"); + return 4; + } + if (VERBOSE) { + printf("\n PrecessionModel output = x,y,s = %.13g, %.13g, %.13g\n", + pmodel->x, pmodel->y, pmodel->s); + printf(" Expected output = x,y,s = %.13g, %.13g, %.13g\n", x, y, s); + printf(" A difference of: %.13g, %.13g, %.13g\n", + (pmodel->x - x), (pmodel->y - y), (pmodel->s - s) ); + } + } + psFree(pmodel); + + psFree(time); + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + return 0; +} + +psS32 testEOCPrecessionCorr(void) +{ + psTime *empty = NULL; + psTime *time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = timesec; + time2->nsec = 0; + time2->leapsecond = false; + // time2 = psTimeConvert(time2, PS_TIME_TAI); + + //Tests for Precession Correction function// + //Return NULL for NULL time input + psEarthPole *pcorr = NULL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + pcorr = psEOC_PrecessionCorr(empty, PS_IERS_A); + if (pcorr != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionCorr failed to return NULL for NULL time input.\n"); + return 5; + } + + //Return NULL for Invalid IERS table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + pcorr = psEOC_PrecessionCorr(time2, 3); + if (pcorr != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PrecessionCorr failed to return NULL for incorrect IERS table.\n"); + return 6; + } + psFree(pcorr); + + //Check values from IERS table A + pcorr = psEOC_PrecessionCorr(time2, PS_IERS_A); + if ( pcorr == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PrecessionCorr returned NULL for valid inputs.\n"); + return 7; + } else { + if (VERBOSE) { + printf("\nPrecessionCorr output (IERSA) = x,y,s = %.13g, %.13g, %.13g\n", + pcorr->x, pcorr->y, pcorr->s); + } + } + psFree(pcorr); + + //Check values from IERS table B + pcorr = psEOC_PrecessionCorr(time2, PS_IERS_B); + if ( pcorr == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PrecessionCorr returned NULL for valid inputs.\n"); + return 9; + } else { + double xx, yy, ss; + xx = 0.06295703125; + yy = -0.0287618408203125; + ss = 0.0; + xx = SEC_TO_RAD(xx) * 1e-3; + yy = SEC_TO_RAD(yy) * 1e-3; + // if ( fabs(pcorr->x - xx) > DBL_EPSILON || fabs(pcorr->y - yy) > DBL_EPSILON + // || fabs(pcorr->s - ss) > DBL_EPSILON) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // " psEOC_PrecessionCorr return incorrect values.\n"); + if (VERBOSE) { + printf("PrecessionCorr output (IERSB) = x,y,s = %.13g, %.13g, %.13g\n", + pcorr->x, pcorr->y, pcorr->s); + printf("Expected output = x,y,s = %.13g, %.13g, %.13g\n", xx, yy, ss); + printf(" A difference of: %.13g, %.13g, %.13g\n\n", + (pcorr->x - xx), (pcorr->y - yy), (pcorr->s - ss) ); + } + // return 10; + // } + } + //precess is the *actual* output from PrecessionModel + PrecessionCorr + psEarthPole *precess = psEOC_PrecessionModel(time2); + precess->x += pcorr->x; + precess->y += pcorr->y; + double xCorr, yCorr; + xCorr = 3.05224300720406e-10; + yCorr = -1.39441339235822e-10; + //pcorr is the *expected* output from PrecessionModel// + pcorr->x = 2.857175590089105e-4; + pcorr->y = 2.3968739377734732e-5; + pcorr->s = -1.3970066457904322e-8; + pcorr->x += xCorr; + pcorr->y += yCorr; + psSphereRot *precessNutInv = psSphereRot_CEOtoGCRS(precess); + psSphereRot *precessNut = psSphereRotConjugate(NULL, precessNutInv); + double q0, q1, q2; + q0 = -1.1984522406756289e-5; + q1 = 1.4285893358610674e-4; + q2 = 1.2191193518914336e-10; + psSphereRot *pni = psSphereRot_CEOtoGCRS(pcorr); + if (fabs(pni->q0-q0) > FLT_EPSILON || fabs(pni->q1-q1) > FLT_EPSILON || + fabs(pni->q2-q2) > FLT_EPSILON ) { + printf("\n Error at CEOtoGCRS, output psSphereRot doesn't match expected.\n"); + } + // printf(" Output from CEOtoGCRS only = %.13g,%.13g,%.13g,%.13g\n", + // pni->q0, pni->q1, pni->q2, pni->q3); + if (VERBOSE) { + printf(" Expected sphere rotation = %.13g, %.13g, %.13g\n", q0,q1,q2); + printf(" Result sphere rotation = %.13g, %.13g, %.13g\n", + precessNutInv->q0, precessNutInv->q1, precessNutInv->q2); + printf(" Difference = %.13g, %.13g, %.13g\n\n", + precessNutInv->q0-q0, precessNutInv->q1-q1, precessNutInv->q2-q2); + } + psCube *objC = psCubeAlloc(); + // objC->x = -3.5963388069046304; + // objC->y = 0.5555192509816625; + // objC->z = 0.7497078321908413; + // objSetup(); + + //This is the sphere rotation for the *expected* precession output// + psSphereRot *pn = psSphereRotConjugate(NULL, pni); + + // psSphere *sphere = psSphereAlloc(); + // *sphere = *obj; + // psFree(obj); + + //create a psSphere for (from) the start position given in eoc_testing// + objC->x = -0.35963388069046304; + objC->y = 0.5555192509816625; + objC->z = 0.7497078321908413; + psSphere *sphere = psCubeToSphere(objC); + + psSphere *expect = psSphereRotApply(NULL, pn, sphere); + //expected results below - stored in: sphere // + double x,y,z; + x = -0.3598480726985338; + y = 0.5555012823608123; + z = 0.7496183628158023; + if (VERBOSE) { + printf("\n<x, objC->y, objC->z); + //printf(" Difference = %.13g, %.13g, %.13g\n", objC->x-x, objC->y-y, objC->z-z); + // x = objC->x; + // y = objC->y; + // z = objC->z; + psSphere *result = psSphereRotApply(NULL, precessNut, sphere); + psFree(objC); + objC = psSphereToCube(result); + double xx = greatCircle(result, expect); + if (VERBOSE) { + printf("<x, objC->y, objC->z); + printf(" Difference = %.13g, %.13g, %.13g\n\n", + objC->x-x, objC->y-y, objC->z-z); + printf("GREAT CIRCLE DIFFERENCE = %.13g \n", xx); + } + + psFree(precess); + psFree(precessNut); + psFree(precessNutInv); + psFree(expect); + psFree(objC); + + psFree(sphere); + psFree(result); + psFree(pn); + psFree(pni); + psFree(pcorr); + psFree(time2); + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + return 0; +} + +psS32 testEOCPolar(void) +{ + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = timesec; + in->nsec = 0; + in->leapsecond = false; + psTime *empty = NULL; + psEarthPole *polarMotion = NULL; + + //Return NULL for NULL input time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + polarMotion = psEOC_GetPolarMotion(empty, PS_IERS_B); + if (polarMotion != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_GetPolarMotion failed to return NULL for NULL input time.\n"); + return 1; + } + //Return NULL for incorrect Bulletin. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + polarMotion = psEOC_GetPolarMotion(empty, 3); + if (polarMotion != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_GetPolarMotion failed to return NULL for NULL input time.\n"); + return 1; + } + + //Test for IERS bulletin A. + double x, y, s; + x = -6.454389659777e-07; + y = 2.112606414597e-06; + s = 0.0; + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_A); + if (polarMotion == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_GetPolarMotion returned NULL for valid input time.\n"); + return 4; + } + // if ( fabs(polarMotion->x - x) > DBL_EPSILON || fabs(polarMotion->y - y) > DBL_EPSILON + // || fabs(polarMotion->s - s) > DBL_EPSILON) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // "psEOC_GetPolarMotion returned incorrect values.\n"); + if (VERBOSE) { + printf(" <>PolarMotion output (IERSA) = x,y,s = %.13g, %.13g, %.13g\n", + polarMotion->x, polarMotion->y, polarMotion->s); + } + // printf(" <>PolarMotion expected (IERSA) = x,y,s = %.13g, %.13g, %.13g\n", + // x, y, s); + // return 5; + // } + psFree(polarMotion); + + //Return valid values for correct input time. Test IERS Bulletin B. + polarMotion = psEOC_GetPolarMotion(in, PS_IERS_B); + // x = -6.45381397904e-07; + // y = 2.112819726698e-06; + // s = 0.0; + if (polarMotion == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_GetPolarMotion returned NULL for valid input time.\n"); + return 2; + } + // if ( fabs(polarMotion->x - x) > DBL_EPSILON || fabs(polarMotion->y - y) > DBL_EPSILON + // || fabs(polarMotion->s - s) > DBL_EPSILON) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // "psEOC_GetPolarMotion returned incorrect values.\n"); + if (VERBOSE) { + printf(" <>PolarMotion output (IERSB) = x,y,s = %.13g, %.13g, %.13g\n", + polarMotion->x, polarMotion->y, polarMotion->s); + } + // printf(" <>PolarMotion expected (IERSB) = x,y,s = %.13g, %.13g, %.13g\n", + // x, y, s); + // return 3; + // } + psEarthPole *nutationCorr = psEOC_NutationCorr(in); + if (nutationCorr == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, "Nutation Correction returned NULL.\n"); + return 6; + } + polarMotion->x += nutationCorr->x; + polarMotion->y += nutationCorr->y; + polarMotion->s += nutationCorr->s; + psEarthPole *polarTide = psEOC_PolarTideCorr(in); + polarMotion->x += polarTide->x; + polarMotion->y += polarTide->y; + psFree(polarTide); + x = -6.43607313124045e-7; + y = 2.11351436973568e-6; + s = -7.39617581324646e-12; + // if ( fabs(polarMotion->x - x) > DBL_EPSILON || fabs(polarMotion->y - y) > DBL_EPSILON + // || fabs(polarMotion->s - s) > DBL_EPSILON) { + // psError(PS_ERR_BAD_PARAMETER_VALUE, false, + // " psEOC_GetPolarMotion returned incorrect values.\n"); + if (VERBOSE) { + printf("\n PolarMotion + NutationCorr out = x,y,s = %.13g, %.13g, %.13g\n", + polarMotion->x, polarMotion->y, polarMotion->s); + printf(" Expected output = x,y,s = %.13g, %.13g, %.13g\n", x, y, s); + printf(" Difference = x,y,s = %.13g, %.13g, %.13g\n", + polarMotion->x - x, polarMotion->y - y, polarMotion->s - s); + } + // } + + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + psFree(nutationCorr); + psFree(in); + psFree(polarMotion); + return 0; +} + +psS32 testEOCPolarTide(void) +{ + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = timesec; + in->nsec = 0; + in->leapsecond = false; + psTime *empty = NULL; + psEarthPole *eop = NULL; + + //Return NULL for NULL input time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + eop = psEOC_PolarTideCorr(empty); + if (eop != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_PolarTideCorr failed to return NULL for NULL input time.\n"); + return 1; + } + + eop = psEOC_PolarTideCorr(in); + if (eop == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_PolarTideCorr returned NULL for valid input time.\n"); + return 2; + } else { + if (VERBOSE) { + printf("\nPolarTideCorr output = x,y,s = %.13g, %.13g, %.13g\n", + eop->x, eop->y, eop->s); + } + } + + psFree(in); + psFree(eop); + + return 0; +} + +psS32 testEOCNutation(void) +{ + psTime *in = psTimeAlloc(PS_TIME_UTC); + in->sec = timesec; + in->nsec = 0; + in->leapsecond = false; + psTime *empty = NULL; + psEarthPole *nute = NULL; + + //Return NULL for NULL input time. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + nute = psEOC_NutationCorr(empty); + if (nute != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_NutationCorr failed to return NULL for NULL input time.\n"); + return 1; + } + //Return NULL for UT1 time input + /* psTime *UT1time = psTimeAlloc(PS_TIME_UT1); + nute = psEOC_NutationCorr(UT1time); + if (nute != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psEOC_NutationCorr failed to return NULL for UT1 input time.\n"); + return 2; + } + psFree(UT1time); + */ + //Check return values from valid nutation time input + nute = psEOC_NutationCorr(in); + if ( nute == NULL ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psEOC_NutationCorr returned NULL for valid input.\n"); + return 3; + } else { + if (VERBOSE) { + printf("Nutation Correction output = x,y,s = %.13g, %.13g, %.13g\n\n", + nute->x, nute->y, nute->s); + } + } + psFree(nute); + psFree(in); + + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + + return 0; +} + +psS32 testSphereRot_TEOtoCEO(void) +{ + psSphereRot *rot = NULL; + psTime *empty = NULL; + psTime *time = psTimeAlloc(PS_TIME_UT1); + time->sec = timesec-1; + time->nsec = 657017200; + time->leapsecond = false; + + //return NULL for NULL input time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + rot = psSphereRot_TEOtoCEO(empty, NULL); + if (rot != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_TEOtoCEO failed to return NULL for NULL input time.\n"); + return 1; + } + + psEarthPole *polarTideCorr = psEOC_PolarTideCorr(time); + psSphereRot *teoceo = psSphereRot_TEOtoCEO(time, polarTideCorr); + //Make sure values match for other psTime type + empty = psTimeAlloc(PS_TIME_UTC); + empty->sec = timesec; + empty->nsec = 0; + empty->leapsecond = false; + + rot = psSphereRot_TEOtoCEO(empty, polarTideCorr); + if (fabs(rot->q0-teoceo->q0) > 0.00001 || fabs(rot->q1-teoceo->q1) > 0.00001 || + fabs(rot->q2-teoceo->q2) > 0.00001 || fabs(rot->q3-teoceo->q3) > 0.00001) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_TEOtoCEO failed to return matching values for different time types.\n"); + if (VERBOSE) { + printf("\n Output Rotation1 = q0,q1,q2,q3 = %.13g, %.13g, %.13g, %.13g\n", + teoceo->q0, teoceo->q1, teoceo->q2, teoceo->q3 ); + printf("\n Output Rotation2 = q0,q1,q2,q3 = %.13g, %.13g, %.13g, %.13g\n", + rot->q0, rot->q1, rot->q2, rot->q3 ); + } + return 2; + } + if (VERBOSE) { + printf("\n Output Rotation = q0,q1,q2,q3 = %.13g, %.13g, %.13g, %.13g\n", + teoceo->q0, teoceo->q1, teoceo->q2, teoceo->q3 ); + } + + objSetup(); + psSphereRot *earthRot = psSphereRotConjugate(NULL, teoceo); + psSphere *result = psSphereRotApply(NULL, earthRot, obj); + // psSphere *result = psSphereRotApply(NULL, teoceo, obj); + psCube *cube = psSphereToCube(result); + + double x, y, z; + x = 0.01698625430807123; + y = -0.6616523084626379; + z = 0.7496183628158023; + if ( fabs(x-cube->x) > FLT_EPSILON || fabs(y-cube->y) > FLT_EPSILON || + fabs(z-cube->z) > FLT_EPSILON) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_TEOtoCEO returned incorrect values.\n"); + if (VERBOSE) { + printf("\nOutput cube = x,y,z = %.13g, %.13g, %.13g\n", + cube->x, cube->y, cube->z); + printf("Expected cube = x,y,z = %.13g, %.13g, %.13g\n", x, y, z); + printf("A difference of: %.13g, %.13g, %.13g\n\n", + (x-cube->x), (y-cube->y), (z-cube->z)); + } + return 3; + } + + psFree(polarTideCorr); + psFree(rot); + psFree(empty); + psFree(result); + psFree(obj); + psFree(earthRot); + psFree(cube); + psFree(time); + psFree(teoceo); + return 0; +} + +psS32 testSphereRot_CEOtoGCRS(void) +{ + psEarthPole *in = psEarthPoleAlloc(); + psEarthPole *empty = NULL; + psSphereRot *rot = NULL; + in->x = 2.857175590089105e-4; + in->y = 2.3968739377734732e-5; + in->s = -1.3970066457904322e-8; + + double q0,q1,q2,q3; + q0 = -1.1984522406756289e-5; + q1 = 1.4285893358610674e-4; + q2 = 1.2191193518914336e-10; + q3 = -0.9999999897238481; + + //Return NULL for NULL input earthpole + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + rot = psSphereRot_CEOtoGCRS(empty); + if (rot != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_CEOtoGCRS failed to return NULL for NULL input psEarthPole.\n"); + return 1; + } + + rot = psSphereRot_CEOtoGCRS(in); + if (rot == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psSphereRot_CEOtoGCRS returned NULL for valid psEarthPole input.\n"); + return 2; + } + + if (VERBOSE) { + printf("\n Output sphere rotation = %.13g, %.13g, %.13g, %.13g\n", + rot->q0, rot->q1, rot->q2, rot->q3); + printf(" Expected sphere rotation = %.13g, %.13g, %.13g, %.13g\n", q0,q1,q2,q3); + printf(" difference: %.13g, %.13g, %.13g \n", + (rot->q0-q0), (rot->q1-q1), (rot->q2-q2) ); + } + if (fabs(rot->q0-q0) > FLT_EPSILON || fabs(rot->q1-q1) > FLT_EPSILON || + fabs(rot->q2-q2) > FLT_EPSILON || fabs(rot->q3+q3) > FLT_EPSILON) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_CEOtoGCRS failed to return expected values.\n"); + return 3; + } + psCube *tempCube = psCubeAlloc(); + tempCube->x = -0.35963388069046304; + tempCube->y = 0.5555192509816625; + tempCube->z = 0.7497078321908413; + obj = psCubeToSphere(tempCube); + psFree(tempCube); + psSphereRot *precessionNutation = psSphereRotConjugate(NULL, rot); + psSphere *result = psSphereRotApply(NULL, precessionNutation, obj); + psCube *cube = psSphereToCube(result); + double x, y, z; + x = -0.3598480726985338; + y = 0.5555012823608123; + z = 0.7496183628158023; + if (VERBOSE) { + printf("\n Output cube = x,y,z = %.13g, %.13g, %.13g\n", cube->x, cube->y, cube->z); + printf("Expected cube = x,y,z = %.13g, %.13g, %.13g\n", x, y, z); + printf(" A difference of: %.13g, %.13g, %.13g\n\n", + (x-cube->x), (y-cube->y), (z-cube->z)); + } + psCube *expect = psCubeAlloc(); + expect->x = x; + expect->y = y; + expect->z = z; + psSphere *expected = psCubeToSphere(expect); + double d = greatCircle(result, expected); + if (VERBOSE) { + printf(" The great circle angular distance between expected & result = %.13g\n", d); + } + + psFree(expect); + psFree(expected); + psFree(obj); + psFree(precessionNutation); + psFree(result); + psFree(cube); + psFree(rot); + psFree(in); + + return 0; +} + +psS32 testSphereRot_ITRStoTEO(void) +{ + psEarthPole *in = psEarthPoleAlloc(); + psEarthPole *empty = NULL; + psSphereRot *rot = NULL; + in->x = -0.13275353774074533; + in->y = 0.4359436319739848; + in->s = -4.2376965863576153e-10; + in->x = SEC_TO_RAD(in->x); + in->y = SEC_TO_RAD(in->y); + in->s = SEC_TO_RAD(in->s); + + //Return NULL for NULL input earthpole + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + rot = psSphereRot_ITRStoTEO(empty); + if (rot != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_ITRStoTEO failed to return NULL for NULL input psEarthPole.\n"); + return 1; + } + + rot = psSphereRot_ITRStoTEO(in); + if (rot == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psSphereRot_ITRStoTEO return NULL for valid psEarthPole input.\n"); + return 2; + } + + double q0,q1,q2,q3; + q0 = -1.0567571848664005e-6; + q1 = 3.218036562931509e-7; + q2 = -3.3580195807204483e-12; + q3 = -0.9999999999993899; + if (fabs(rot->q0-q0) > FLT_EPSILON || fabs(rot->q1-q1) > FLT_EPSILON || + fabs(rot->q2-q2) > FLT_EPSILON + // || fabs(rot->q3-q3) > DBL_EPSILON + ) { + if (VERBOSE) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereRot_ITRStoTEO failed to return expected values.\n"); + printf("\n Output sphere rotation = %.13g, %.13g, %.13g, %.13g\n", + rot->q0, rot->q1, rot->q2, rot->q3); + printf(" Expected sphere rotation = %.13g, %.13g, %.13g, %.13g\n", q0,q1,q2,q3); + printf(" a difference: %.13g, %.13g, %.13g, %.13g \n", (rot->q0-q0), (rot->q1-q1), + (rot->q2-q2), (rot->q3-q3) ); + } + // printf("Error #3\n"); + // return 3; + } + if (VERBOSE) { + printf("\n Output sphere rotation = %.13g, %.13g, %.13g, %.13g\n", + rot->q0, rot->q1, rot->q2, rot->q3); + printf(" Expected sphere rotation = %.13g, %.13g, %.13g, %.13g\n", q0,q1,q2,q3); + } + + psCube *temp = psCubeAlloc(); + // temp->x = -0.3596195125758298; + // temp->y = 0.5555613903455866; + // temp->z = 0.7496834983724809; + temp->x = 0.01698625430807123; + temp->y = -0.6616523084626379; + temp->z = 0.7496183628158023; + + obj = psCubeToSphere(temp); + psSphere *test = NULL; + psFree(temp); + psSphereRot *newRot = psSphereRotConjugate(NULL, rot); + test = psSphereRotApply(NULL, newRot, obj); + temp = psSphereToCube(test); + double x, y, z; + x = 0.01698577185310146; + y = -0.6616538927902393; + z = 0.7496169753347885; + if (VERBOSE) { + printf("\n Cube -test- has x,y,z = %.13g, %.13g, %.13g \n", + temp->x, temp->y, temp->z); + printf("\n Cube -expected- has x,y,z = %.13g, %.13g, %.13g \n", x, y, z ); + } + temp->x = x; + temp->y = y; + temp->z = z; + psSphere *sphere = psCubeToSphere(temp); + double d = greatCircle(sphere, test); + if (VERBOSE) { + printf("Great circle difference of: %.13g \n", d); + } + + psFree(sphere); + psFree(newRot); + psFree(obj); + psFree(temp); + psFree(test); + psFree(rot); + psFree(in); + + return 0; +} + +#define SPHERE_PRECESS_TP1_R 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP1_D 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP1_EXPECT_R 6.238453 // 357.437 degrees +#define SPHERE_PRECESS_TP1_EXPECT_D -0.019426 // -1.113 degrees +#define SPHERE_PRECESS_TP2_R 0.0 // 0.0 degrees +#define SPHERE_PRECESS_TP2_D 1.570796 // 90.0 degrees +#define SPHERE_PRECESS_TP2_EXPECT_R 6.260828 // 358.719 degrees +#define SPHERE_PRECESS_TP2_EXPECT_D 1.551353 // 88.886 degrees +#define SPHERE_PRECESS_TP3_R 3.141593 // 180.0 degrees +#define SPHERE_PRECESS_TP3_D 0.523599 // 30.0 degrees +#define SPHERE_PRECESS_TP3_EXPECT_R 3.096616 // 177.423 degrees +#define SPHERE_PRECESS_TP3_EXPECT_D 0.543024 // 31.113 degrees +#define ERROR_TOL 0.0001 +#define MJD_1900 15021.0 // Modified Julian Day 1/1/1900 00:00:00 +#define MJD_2100 88069.0 // Modified Julian Day 1/1/2100 00:00:00 + +psS32 testSphereRotPrecess( void ) +{ + + psSphere* inputCoord = psSphereAlloc(); + psSphere* outputCoord = NULL; + // psTime* fromTime = psTimeFromMJD(MJD_1900); + // psTime* toTime = psTimeFromMJD(MJD_2100); + psTime* fromTime = psTimeFromMJD(MJD_2100); + psTime* toTime = psTimeFromMJD(MJD_1900); + psSphereRot *rot = NULL; + // Set input coordinate + inputCoord->r = SPHERE_PRECESS_TP1_R; + inputCoord->d = SPHERE_PRECESS_TP1_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + // Calculate precess + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) { + outputCoord->r += 2.0 * M_PI; + } + // outputCoord = psSpherePrecess(inputCoord, fromTime, toTime, PS_PRECESS_ROUGH); + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 1; + } + // Verify return with expected values + if( fabs(outputCoord->r - SPHERE_PRECESS_TP1_EXPECT_R) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess r = %lg not equal to expected = %lg", + outputCoord->r,SPHERE_PRECESS_TP1_EXPECT_R); + return 2; + } + if( fabs(outputCoord->d - SPHERE_PRECESS_TP1_EXPECT_D) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess d = %lg not equal to expected = %lg", + outputCoord->d,SPHERE_PRECESS_TP1_EXPECT_D); + return 3; + } + psFree(outputCoord); + psFree(rot); + + // Set input coordinate + inputCoord->r = SPHERE_PRECESS_TP2_R; + inputCoord->d = SPHERE_PRECESS_TP2_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + // Calculate precess + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) { + outputCoord->r += 2.0 * M_PI; + } + // outputCoord = psSpherePrecess(inputCoord, fromTime, toTime, PS_PRECESS_ROUGH); + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 4; + } + // Verify return with expected values + if( fabs(outputCoord->r - SPHERE_PRECESS_TP2_EXPECT_R) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess r = %lg not equal to expected = %lg", + outputCoord->r,SPHERE_PRECESS_TP2_EXPECT_R); + return 5; + } + if( fabs(outputCoord->d - SPHERE_PRECESS_TP2_EXPECT_D) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess d = %lg not equal to expected = %lg", + outputCoord->d,SPHERE_PRECESS_TP2_EXPECT_D); + return 6; + } + psFree(outputCoord); + psFree(rot); + + // Set input coordinate + inputCoord->r = SPHERE_PRECESS_TP3_R; + inputCoord->d = SPHERE_PRECESS_TP3_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + + // Calculate precess + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_ROUGH); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.0001) { + outputCoord->r += 2.0 * M_PI; + } + // outputCoord = psSpherePrecess(inputCoord, fromTime, toTime, PS_PRECESS_ROUGH); + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 7; + } + // Verify return with expected values + if( fabs(outputCoord->r - SPHERE_PRECESS_TP3_EXPECT_R) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess r = %lg not equal to expected = %lg", + outputCoord->r,SPHERE_PRECESS_TP3_EXPECT_R); + return 8; + } + if( fabs(outputCoord->d - SPHERE_PRECESS_TP3_EXPECT_D) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Precess d = %lg not equal to expected = %lg", + outputCoord->d,SPHERE_PRECESS_TP3_EXPECT_D); + return 9; + } + psFree(outputCoord); + psFree(rot); + + //Test other modes (IAU2000A, COMPLETE_[A,B]) + // Set input coordinate + inputCoord->r = SPHERE_PRECESS_TP1_R; + inputCoord->d = SPHERE_PRECESS_TP1_D; + inputCoord->rErr = 0.0; + inputCoord->dErr = 0.0; + // Calculate precess + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_COMPLETE_A); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.000001) { + outputCoord->r += 2.0 * M_PI; + } + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 10; + } + psFree(outputCoord); + psFree(rot); + + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_COMPLETE_B); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.000001) { + outputCoord->r += 2.0 * M_PI; + } + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 11; + } + psFree(outputCoord); + psFree(rot); + + rot = psSpherePrecess(fromTime, toTime, PS_PRECESS_IAU2000A); + outputCoord = psSphereRotApply(NULL, rot, inputCoord); + if (outputCoord->r < -0.000001) { + outputCoord->r += 2.0 * M_PI; + } + // Verify return is not NULL + if(outputCoord == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 12; + } + psFree(outputCoord); + psFree(rot); + + // Invoke precess with invalid parameter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + rot = psSpherePrecess(fromTime, toTime, 10); + if(rot != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with invalid input"); + return 14; + } + // Return NULL for NULL input times + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + rot = psSpherePrecess(NULL, NULL, PS_PRECESS_ROUGH); + if(rot != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with invalid input"); + return 15; + } + + if (!p_psEOCFinalize() ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "EOC failed finalization!\n"); + return 12; + } + // Free objects + psFree(fromTime); + psFree(toTime); + psFree(inputCoord); + + return 0; +} Index: /branches/rel-1-1/psLib/test/astro/tst_psSphereOps.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psSphereOps.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psSphereOps.c (revision 12167) @@ -0,0 +1,390 @@ +/** @file tst_psSphereOps.c +* +* @brief The code will perform sphere rotations and transformations. +* +* @author d-Rob, MHPCC +* +* @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-02 23:19:58 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 testSphereRotAlloc(void); +static psS32 testSphereRotQuat(void); +static psS32 testSphereRotApply1(void); +static psS32 testSphereRotApplyCelestial(void); +static psS32 testSphereOffset(void); + +testDescription tests[] = { + {testSphereRotAlloc, 819, "psSphereRotAlloc()", 0, false}, + {testSphereRotQuat, 820, "psSphereRotQuat()", 0, false}, + {testSphereRotApply1, 821, "psSphereRotApply()", 0, false}, + {testSphereRotApplyCelestial, 822, "psSphereRotApplyCel()", 0, false}, + {testSphereOffset, 825, "testSphereOffset()", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + psLogSetFormat("HLNM"); + + return ( ! runTestSuite( stderr, "psSphereOps", tests, argc, argv ) ); +} + +#define DEG_INC 30.0 + +#define MJD_1900 15021.0 // Modified Julian Day 1/1/1900 00:00:00 +#define MJD_2000 51544.0 // Modified Julian Day 1/1/2000 00:00:00 +#define MJD_2100 88069.0 // Modified Julian Day 1/1/2100 00:00:00 + +#define ERROR_TOL 0.0001 + +#define ALPHA_P 4*M_PI/3 +#define DELTA_P M_PI/4 +#define PHI_P M_PI/3 + +psS32 testSphereRotAlloc( void ) +{ + // Allocate data structure + psSphereRot* myST = psSphereRotAlloc(ALPHA_P, DELTA_P, PHI_P); + + // Verify null not returned + if(myST == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL with valid parameters"); + return 1; + } + + double a0 = (ALPHA_P - PHI_P)/2.0; + double a1 = (ALPHA_P - PHI_P)/2.0; + double a2 = (ALPHA_P + PHI_P)/2.0; + double a3 = (ALPHA_P + PHI_P)/2.0; + //From Mathworld, this is another way to calculate the quaternions of a rotation + double q0 = sin(a0)*sin(DELTA_P/2); + double q1 = cos(a1)*sin(DELTA_P/2); + double q2 = sin(a2)*cos(DELTA_P/2); + double q3 = cos(a3)*cos(DELTA_P/2); + //Check that the quaternion components all match + if (DBL_EPSILON < fabs(q0 - myST->q0)) { + psError(PS_ERR_UNKNOWN,true,"myST->q0 is %lf, should be %lf\n", myST->q0, q0); + return 2; + } + if (DBL_EPSILON < fabs(q1 - myST->q1)) { + psError(PS_ERR_UNKNOWN,true,"myST->q1 is %f, should be %f\n", myST->q1, q1); + return 3; + } + if (DBL_EPSILON < fabs(q2 - myST->q2)) { + psError(PS_ERR_UNKNOWN,true,"myST->q2 is %f, should be %f\n", myST->q2, q2); + return 4; + } + if (DBL_EPSILON < fabs(q3 - myST->q3)) { + psError(PS_ERR_UNKNOWN,true,"myST->q0 is %f, should be %f\n", myST->q3, q3); + return 5; + } + + // Free data structure + psFree(myST); + + return 0; +} + +psS32 testSphereRotQuat(void) +{ + double a0 = (ALPHA_P - PHI_P)/2.0; + double a1 = (ALPHA_P - PHI_P)/2.0; + double a2 = (ALPHA_P + PHI_P)/2.0; + double a3 = (ALPHA_P + PHI_P)/2.0; + //From Mathworld, this is another way to calculate the quaternions of a rotation + double q0 = sin(a0)*sin(DELTA_P/2); + double q1 = cos(a1)*sin(DELTA_P/2); + double q2 = sin(a2)*cos(DELTA_P/2); + double q3 = cos(a3)*cos(DELTA_P/2); + + psSphereRot *myST = psSphereRotQuat(q0*2.0, q1*2.0, q2*2.0, q3*2.0); + // Verify null not returned + if(myST == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL with valid parameters"); + return 1; + } + //Check that the quaternion components all match + if (FLT_EPSILON < fabs(q0 - myST->q0)) { + psError(PS_ERR_UNKNOWN,true,"myST->q0 is %lf, should be %lf\n", myST->q0, q0); + return 2; + } + if (FLT_EPSILON < fabs(q1 - myST->q1)) { + psError(PS_ERR_UNKNOWN,true,"myST->q1 is %f, should be %f\n", myST->q1, q1); + return 3; + } + if (FLT_EPSILON < fabs(q2 - myST->q2)) { + psError(PS_ERR_UNKNOWN,true,"myST->q2 is %f, should be %f\n", myST->q2, q2); + return 4; + } + if (FLT_EPSILON < fabs(q3 - myST->q3)) { + psError(PS_ERR_UNKNOWN,true,"myST->q0 is %f, should be %f\n", myST->q3, q3); + return 5; + } + + // Free data structure + psFree(myST); + + return 0; +} + +// We do a simple identity transformation on a few RA, DEC pairs. +psS32 testSphereRotApply1( void ) +{ + psSphere *in = psSphereAlloc(); + psSphere *out = psSphereAlloc(); + psSphere *temp = NULL; + psSphere *rc = NULL; + psSphere *temp2 = psSphereAlloc(); + psSphereRot *myST = psSphereRotAlloc(ALPHA_P, DELTA_P, PHI_P); + psSphereRot *yourST = psSphereRotInvert(ALPHA_P, DELTA_P, PHI_P); + + for (float r=0.0;r<180.0;r+=DEG_INC) { + for (float d=0.0;d<90.0;d+=DEG_INC) { + in->r = DEG_TO_RAD(r); + in->d = DEG_TO_RAD(d); + in->rErr = 0.0; + in->dErr = 0.0; + //Here we apply the sphere rotation, then the inverse + temp2 = psSphereRotApply(temp2, myST, in); + out = psSphereRotApply(out, yourST, temp2); + //Check that out matches in + if (ERROR_TOL < fabs(out->r - in->r)) { + psError(PS_ERR_UNKNOWN,true,"out->r is %f, should be %f\n", out->r, in->r); + return 2; + } + if (ERROR_TOL < fabs(out->d - in->d)) { + psError(PS_ERR_UNKNOWN,true,"out->d is %f, should be %f\n", out->d, in->d); + return 3; + } + } + } + // Verify new sphere object is created if out parameter NULL + temp = psSphereRotApply(NULL, myST, in); + if ( temp == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL when out parameter was null"); + return 4; + } + psFree(temp); + + // Verify NULL returned if transform structure null + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + rc = psSphereRotApply(NULL, NULL, in); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"psSphereRotApply() did not return NULL."); + return 5; + } + + // Verify NULL returned when input sphere is NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + rc = psSphereRotApply(NULL, myST, NULL); + if (rc != NULL) { + psError(PS_ERR_UNKNOWN,true,"psSphereRotApply() did not return NULL"); + return 6; + } + + psFree(myST); + psFree(yourST); + psFree(temp2); + psFree(out); + psFree(in); + + return 0; +} + +#define ERROR_PERCENT 0.01 + +psS32 testSphereRotApplyCelestial( void) +{ + //Test cases below were provided in ADD. + int numTestPoints = 3; + // ICRS coordinates + double alpha[] = { 0.0, 0.0, 180.0 }; + double delta[] = { 0.0, 90.0, 30.0 }; + //Ecliptic coordinates + double lambda[] ={ 0.0, 90.0, 167.072470}; + double beta[] = { 0.0, 66.560719, 27.308813}; + // Galactic coordinates + double l[] = { 96.337272, 122.93192, 195.639488}; + double b[] = {-60.188553, 27.12825, 78.353806}; + double t[] = { MJD_2000, MJD_2000, MJD_2100}; + double TOLERANCE = 0.001; + + for (int x = 0; x < numTestPoints; x++) { + //Setup the appropriate rotations + psTime* time = psTimeFromMJD(t[x]); + psSphereRot* toEcliptic = psSphereRotICRSToEcliptic(time); + psSphereRot* fromEcliptic = psSphereRotEclipticToICRS(time); + psSphereRot* toGalactic = psSphereRotICRSToGalactic(); + psSphereRot* fromGalactic = psSphereRotGalacticToICRS(); + psFree(time); + + // set the ICRS coordinate + psSphere* icrs = psSphereAlloc(); + icrs->r = DEG_TO_RAD(alpha[x]); + icrs->d = DEG_TO_RAD(delta[x]); + + // apply/unapply Ecliptic + psSphere* ecliptic = psSphereRotApply(NULL, toEcliptic, icrs); + psSphere* icrsFromEcliptic = psSphereRotApply(NULL, fromEcliptic, ecliptic); + + // check ecliptic transforms for correctness + if (fabs(RAD_TO_DEG(ecliptic->r) - lambda[x]) > TOLERANCE || + fabs(RAD_TO_DEG(ecliptic->d) - beta[x]) > TOLERANCE) { + psError(PS_ERR_UNKNOWN, false, + "Ecliptic tranformation incorrect. Result is (%g,%g), expected (%g,%g)", + RAD_TO_DEG(ecliptic->r),RAD_TO_DEG(ecliptic->d), + lambda[x], beta[x]); + return 1; + } + //The second condition here (d - 90) is used b/c 90 is a pole. + if ( (fabs(RAD_TO_DEG(icrsFromEcliptic->r) - alpha[x]) > TOLERANCE && + fabs(RAD_TO_DEG(icrsFromEcliptic->d) - 90.0) > TOLERANCE ) || + fabs(RAD_TO_DEG(icrsFromEcliptic->d) - delta[x]) > TOLERANCE) { + psError(PS_ERR_UNKNOWN, false, + "ICRS for Ecliptic tranformation incorrect. Result is (%g,%g), expected (%g,%g)", + RAD_TO_DEG(icrsFromEcliptic->r),RAD_TO_DEG(icrsFromEcliptic->d), + alpha[x], delta[x]); + return 2; + } + psFree(ecliptic); + psFree(icrsFromEcliptic); + + //Setup galactic transformations + psSphere* galactic = psSphereRotApply(NULL, toGalactic, icrs); + psSphere* icrsFromGalactic = psSphereRotApply(NULL, fromGalactic, galactic); + + // check ecliptic transforms for correctness + if (fabs(RAD_TO_DEG(galactic->r) - l[x]) > TOLERANCE || + fabs(RAD_TO_DEG(galactic->d) - b[x]) > TOLERANCE) { + psError(PS_ERR_UNKNOWN, false, + "Galactic tranformation incorrect. Result is (%g,%g), expected (%g,%g)", + RAD_TO_DEG(galactic->r),RAD_TO_DEG(galactic->d), + l[x], b[x]); + return 3; + } + //The second condition here (d - 90) is used b/c 90 is a pole. + if ( (fabs(RAD_TO_DEG(icrsFromGalactic->r) - alpha[x]) > TOLERANCE && + fabs(RAD_TO_DEG(icrsFromGalactic->d) - 90.0) > TOLERANCE ) || + fabs(RAD_TO_DEG(icrsFromGalactic->d) - delta[x]) > TOLERANCE) { + psError(PS_ERR_UNKNOWN, false, + "ICRS for Galactic tranformation incorrect. Result is (%g,%g), expected (%g,%g)", + RAD_TO_DEG(icrsFromGalactic->r),RAD_TO_DEG(icrsFromGalactic->d), + alpha[x], delta[x]); + return 4; + } + psFree(galactic); + psFree(icrsFromGalactic); + psFree(icrs); + psFree(toEcliptic); + psFree(fromEcliptic); + psFree(toGalactic); + psFree(fromGalactic); + } + return 0; +} + +psS32 testSphereOffset(void) +{ + psSphere *origin = psSphereAlloc(); + psSphere *offset = psSphereAlloc(); + psSphere *dest = psSphereAlloc(); + psSphere *empty = NULL; + psSphere *output = NULL; + + //Test Set for NULL position + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + output = psSphereSetOffset(empty, offset, PS_SPHERICAL, PS_DEGREE); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereSetOffset Failed to return NULL for NULL input.\n"); + return 1; + } + //Test Set for NULL offset + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + output = psSphereSetOffset(offset, empty, PS_SPHERICAL, PS_DEGREE); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereSetOffset Failed to return NULL for NULL input.\n"); + return 2; + } + //Test Get for NULL position1 + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + output = psSphereGetOffset(empty, origin, PS_LINEAR, PS_RADIAN); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereGetOffset Failed to return NULL for NULL input.\n"); + return 3; + } + //Test Get for NULL position2 + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + output = psSphereGetOffset(origin, empty, PS_LINEAR, PS_RADIAN); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereGetOffset Failed to return NULL for NULL input.\n"); + return 4; + } + + //Test Set using Spherical mode, Degree units + origin->r = 0.0; + origin->d = 0.0; + offset->r = 45.0; + offset->d = 30.0; + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_DEGREE); + if ( fabs(output->r - M_PI/4.0) > 0.0001 || + fabs(output->d - M_PI/6.0) > 0.0001 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereSetOffset failed to return correct spherical offset values.\n"); + return 5; + } + psFree(output); + + //Test Set and Get using Linear mode, Radian units + origin->r = 0.0; + origin->d = 0.0; + offset->r = 1.0; + offset->d = 1.0; + output = psSphereSetOffset(origin, offset, PS_LINEAR, PS_RADIAN); + + empty = psSphereGetOffset(origin, output, PS_LINEAR, PS_RADIAN); + if ( fabs(offset->r - empty->r) > 0.0001 || fabs(offset->d - empty->d) > 0.0001 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereGetOffset failed to return correct linear offset values.\n"); + return 7; + } + psFree(output); + psFree(empty); + + //Test Set using Linear mode, Arcmin units + origin->r = 0.0; + origin->d = 0.0; + offset->r = RAD_TO_MIN(M_PI / 4.0); //45 deg + offset->d = RAD_TO_MIN(M_PI / 6.0); //30 deg + output = psSphereSetOffset(origin, offset, PS_SPHERICAL, PS_ARCMIN); + //Test Get using Spherical mode, Arcsec units + empty = psSphereGetOffset(origin, output, PS_SPHERICAL, PS_ARCSEC); + empty->r = SEC_TO_RAD(empty->r); + empty->d = SEC_TO_RAD(empty->d); + if (fabs(empty->r - (M_PI / 4.0)) > 0.001 || fabs(empty->d - (M_PI / 6.0)) > 0.001) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psSphereGetOffset failed to return correct offset unit values.\n"); + printf("\n SphereGetOffset should be %lf, %lf and is %lf, %lf\n", output->r, output->d, + empty->r, empty->d); + return 8; + } + psFree(output); + + psFree(origin); + psFree(dest); + psFree(offset); + psFree(empty); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/astro/tst_psTime_01.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psTime_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psTime_01.c (revision 12167) @@ -0,0 +1,1163 @@ +/** @file tst_psTime_01.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) Allocate psTime structure + * 2) Get current time + * 3) Get UT1 UTC delta + * 4) Convert psTime to MJD + * 5) Convert psTime to JD + * 6) Convert psTime to ISO + * 7) Convert psTime to timeval + * 8) Create psTime from MJD + * 9) Create psTime from JD + * 10) Create psTime from ISO + * 11) Create psTime from timeval + * 12) Create psTime from TM + * 13) Convert time between different types + * + * O) Convert psTime time to LMST + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-07-21 00:08:15 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" +#include + +#define ERROR_TOL 0.0001 + +static psS32 testTimeAlloc(void); +static psS32 testTimeGetNow(void); +static psS32 testTimeGetUT1Delta(void); +static psS32 testTimeToMJD(void); +static psS32 testTimeToJD(void); +static psS32 testTimeToISO(void); +static psS32 testTimeToTimeval(void); +static psS32 testTimeFromMJD(void); +static psS32 testTimeFromJD(void); +static psS32 testTimeFromISO(void); +static psS32 testTimeFromTimeval(void); +static psS32 testTimeFromTM(void); +static psS32 testTimeConvert(void); + +testDescription tests[] = { + {testTimeAlloc,1,"psTimeAlloc",0,false}, + {testTimeGetNow,2,"psTimeGetNow",0,false}, + {testTimeGetUT1Delta,3,"psTimeGetUT1Delta",0,false}, + {testTimeToMJD,4,"psTimeToMJD",0,false}, + {testTimeToJD,5,"psTimeToJD",0,false}, + {testTimeToISO,6,"psTimeToISO",0,false}, + {testTimeToTimeval,7,"psTimeToTimeval",0,false}, + {testTimeFromMJD,8,"psTimeFromMJD",0,false}, + {testTimeFromJD,9,"psTimeFromJD",0,false}, + {testTimeFromISO,10,"psTimeFromISO",0,false}, + {testTimeFromTimeval,11,"psTimeFromTimeval",0,false}, + {testTimeFromTM,12,"p_psTimeFromTM",0,false}, + {testTimeConvert,666,"psTimeConvert",0,false}, + {NULL} + }; + +// Test Time 1 : July 21, 2004 18:22:24.3 +// MJD = 53207.765559 +// JD = 2453208.265559 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1090434144; +const psU32 testTime1NanosecondsUTC = 272044000; +// TAI Test Time 1 +const psS64 testTime1SecondsTAI = 1090434176; +const psU32 testTime1NanosecondsTAI = 272044000; +const psF64 testTime1MJDTAI = 53207.76592937; +const psF64 testTime1JDTAI = 2453208.26592937; + +// TT Test Time 1 +const psS64 testTime1SecondsTT = 1090434208; +const psU32 testTime1NanosecondsTT = 456044000; +// Expected UT1-UTC IERS A & B +const psF64 testTime1UT1DeltaBullA = -0.457233186; +const psF64 testTime1UT1DeltaBullB = -0.457227; +// UT1 Test Time 1 +const psS64 testTime1SecondsUT1 = 1090434143; +//const psU32 testTime1NanosecondsUT1 = 814810814; +const psU32 testTime1NanosecondsUT1 = 814810861; +// Expected MJD & JD +const psF64 testTime1MJD = 53207.765559; +const psF64 testTime1JD = 2453208.265559; +// Expected ISO string +const char* testTime1Str = "2004-07-21T18:22:24.2Z"; +const char* testTime1StrLeap = "2004-07-21T18:22:60.2Z"; +// Expected timeval values +const psS32 testTime1TimevalSec = 1090434144; +const psS32 testTime1TimevalUsec = 272044; + +// Test Time 2 : Jan. 1, 1973 00:00:00.0000 +// MJD = 41683.0000 +// JD = 2441683.5000 +const psS64 testTime2SecondsUTC = 94694400; +const psU32 testTime2NanosecondsUTC = 0; + +// Expected UT1-UTC IERS A & B +const psF64 testTime2UT1DeltaBullA = 0.000000; +const psF64 testTime2UT1DeltaBullB = 0.000000; + +// Test Time 3 : Sept. 21, 2006 00:00:00.0000 +// MJD = 53999 +// JD = 2453999.5 +const psS64 testTime3SecondsUTC = 1158796800; +const psU32 testTime3NanosecondsUTC = 0; +// Expected UT1-UTC IERS A & B +const psF64 testTime3UT1DeltaBullA = -0.63574; +const psF64 testTime3UT1DeltaBullB = -0.63574; + +// Test Time 4 : Jan. 1, 1969 00:00:00.0000 +// MJD = 40222 +// JD = 2440222.5 +const psS64 testTime4SecondsUTC = -31536000; +const psU32 testTime4NanosecondsUTC = 0; +// Expected MJD and JD +const psF64 testTime4MJD = 40222.0; +const psF64 testTime4JD = 2440222.5; + +// Test Time 5 : Dec 31, 0001 BC 23:59:59 +// MJD = -1397755 +// JD = 1002245.4999 +const psS64 testTime5SecondsUTC = -62125920001; +const psU32 testTime5NanosecondsUTC = 0; + +// Test Time 6 : Jan. 1, 10000 AD 00:00:00 +const psS64 testTime6SecondsUTC = 253202544001; +const psU32 testTime6NanosecondsUTC = 0; + +// Test Time 7 : Jan. 1, 2004 00:00:00,0 +const psS64 testTime7Seconds = 1072915200; +const psU32 testTime7Nanoseconds = 0; +const psS32 testTime7TmYear = 104; +const psS32 testTime7TmMon = 0; +const psS32 testTime7TmDay = 1; +const psS32 testTime7TmHour = 0; +const psS32 testTime7TmMin = 0; +const psS32 testTime7TmSec = 0; + +// Test Time 8 : Dec. 31, 2003 00:00:00,0 +const psS64 testTime8Seconds = 1072828800; +const psU32 testTime8Nanoseconds = 0; +const psS32 testTime8TmYear = 103; +const psS32 testTime8TmMon = 11; +const psS32 testTime8TmDay = 31; +const psS32 testTime8TmHour = 0; +const psS32 testTime8TmMin = 0; +const psS32 testTime8TmSec = 0; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + // Initialize library internal structures + psLibInit("pslib.config"); + + if( !runTestSuite(stderr,"psTime",tests,argc,argv)) { + return 1; + } + + // Cleanup library + psLibFinalize(); + + return 0; +} + +psS32 testTimeAlloc(void) +{ + psTime* time = NULL; + + // Allocate new psTime with valid time type + time = psTimeAlloc(PS_TIME_TAI); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return NULL when psTime object ptr expected"); + return 1; + } + // Verify members set properly + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Member type = %d not as expected %d",time->type,PS_TIME_TAI); + return 2; + } + if((time->sec != 0) && (time->nsec != 0) && (time->leapsecond != false)) { + psError(PS_ERR_UNKNOWN,true,"Members not set appropriately"); + return 3; + } + psFree(time); + + // Allocate new psTime with invalid time type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + time = psTimeAlloc(-100); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time type"); + return 4; + } + + return 0; +} +psS32 testTimeGetNow(void) +{ + psTime* timeNow = NULL; + + // Get current time and verify return is psTime structure + timeNow = psTimeGetNow(PS_TIME_TAI); + if(timeNow == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return valid psTime struct"); + return 1; + } + if(timeNow->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Time type %d not as expected %d", + timeNow->type, PS_TIME_TAI); + return 2; + } + psFree(timeNow); + + // Attempt to get time with invalid type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time type"); + timeNow = psTimeGetNow(-100); + if(timeNow != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time type"); + return 3; + } + + return 0; +} + +psS32 testTimeGetUT1Delta(void) +{ + psTime* time = NULL; + psF64 ut1Delta = 0.0; + + // Attempt to convert NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + if( !isnan(ut1Delta)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for NULL psTime"); + return 1; + } + + // Attempt to convert invalid time + time = psTimeAlloc(PS_TIME_TAI); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + if( !isnan(ut1Delta)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid time"); + return 2; + } + + // Attempt to convert time with invalid bulletin + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid bulletin"); + time->nsec = 2; + ut1Delta = psTimeGetUT1Delta(time,-100); + if( !isnan(ut1Delta)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid bulletin"); + return 3; + } + + // Attempt to get delta with valid time and bulletin A + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->type = PS_TIME_UTC; + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_A); + if(fabs(ut1Delta - testTime1UT1DeltaBullA) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 1 bulletin A", + ut1Delta,testTime1UT1DeltaBullA); + return 4; + } + + // Attempt to get delta with valid time and bulletin B + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + if(fabs(ut1Delta - testTime1UT1DeltaBullB) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 1 bulletin B", + ut1Delta,testTime1UT1DeltaBullB); + return 5; + } + + // Attempt to get delta with valid time and bulletin A + time->sec = testTime2SecondsUTC; + time->nsec = testTime2NanosecondsUTC; + time->type = PS_TIME_UTC; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning message predating table"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_A); + if(fabs(ut1Delta - testTime2UT1DeltaBullA) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 2 bulletin A", + ut1Delta,testTime2UT1DeltaBullA); + return 6; + } + + // Attempt to get delta with valid time and bulletin B + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning message predating table"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + if(fabs(ut1Delta - testTime2UT1DeltaBullB) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 2 bulletin B", + ut1Delta,testTime2UT1DeltaBullB); + return 7; + } + + // Attempt to get delta with valid time and bulletin A + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + time->type = PS_TIME_UTC; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning message postdating table"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_A); + if(fabs(ut1Delta - testTime3UT1DeltaBullA) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 3 bulletin A", + ut1Delta,testTime3UT1DeltaBullA); + return 8; + } + + // Attempt to get delta with valid time and bulletin B + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning message postdating table"); + ut1Delta = psTimeGetUT1Delta(time,PS_IERS_B); + if(fabs(ut1Delta - testTime3UT1DeltaBullB) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"UT1 Delta %lf not as expected %lf test time 3 bulletin B", + ut1Delta,testTime3UT1DeltaBullB); + return 9; + } + + psFree(time); + + return 0; +} + +psS32 testTimeToMJD(void) +{ + psTime* time = NULL; + psF64 mjd = 0.0; + + // Attempt to convert with time NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + mjd = psTimeToMJD(NULL); + if(!isnan(mjd)) { + psError(PS_ERR_UNKNOWN,true,"Expected NaN for NULL time"); + return 1; + } + + // Attempt to convert invalid time + time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + mjd = psTimeToMJD(time); + if( !isnan(mjd)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid time"); + return 2; + } + + // Check valid time conversion to MJD after 1/1/1970 epoch + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + mjd = psTimeToMJD(time); + // if(fabs(mjd - testTime1MJD) > ERROR_TOL) { + if(fabs(mjd - 53207.765929) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Expected MJD = %lf not as expected %lf", + mjd, testTime1MJD); + return 3; + } + + // Check valid time conversion to MJD before 1/1/1970 epoch + time->sec = testTime4SecondsUTC; + time->nsec = testTime4NanosecondsUTC; + mjd = psTimeToMJD(time); + if(fabs(mjd - testTime4MJD) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Expected MJD = %lf not as expected %lf", + mjd, testTime4MJD); + return 4; + } + + psFree(time); + + return 0; +} + +psS32 testTimeToJD(void) +{ + psTime* time = NULL; + psF64 jd = 0.0; + + // Attempt to convert with time NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + jd = psTimeToJD(NULL); + if(!isnan(jd)) { + psError(PS_ERR_UNKNOWN,true,"Expected NaN for NULL time"); + return 1; + } + + // Attempt to convert invalid time + time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + jd = psTimeToJD(time); + if( !isnan(jd)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid time"); + return 2; + } + + // Check valid time conversion to MJD after 1/1/1970 epoch + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + jd = psTimeToJD(time); + // if(fabs(jd - testTime1JD) > ERROR_TOL) { + if(fabs(jd - 2453208.265929) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Expected JD = %lf not as expected %lf", + jd, testTime1JD); + return 3; + } + + // Check valid time conversion to MJD before 1/1/1970 epoch + time->sec = testTime4SecondsUTC; + time->nsec = testTime4NanosecondsUTC; + jd = psTimeToJD(time); + if(fabs(jd - testTime4JD) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Expected JD = %lf not as expected %lf", + jd, testTime4JD); + return 4; + } + + psFree(time); + + return 0; +} + +psS32 testTimeToISO(void) +{ + psTime* time = NULL; + char* timeStr = NULL; + + // Attempt to convert with NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL time"); + timeStr = psTimeToISO(time); + if(timeStr != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 1; + } + + // Attempt to convert invalid time + time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + timeStr = psTimeToISO(time); + if( timeStr != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time"); + return 2; + } + + // Verify return NULL for time prior to year 0000 + time->sec = testTime5SecondsUTC; + time->nsec = testTime5NanosecondsUTC; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for time prior year 0000"); + timeStr = psTimeToISO(time); + if(timeStr != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for time prior to year 0000"); + return 3; + } + + // Verify return NULL for time after to year 9999 + time->sec = testTime6SecondsUTC; + time->nsec = testTime6NanosecondsUTC; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for time after year 9999"); + timeStr = psTimeToISO(time); + if(timeStr != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for time after to year 9999"); + return 4; + } + + // Verify return string with valid time + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTime1Str) != 0) { + psError(PS_ERR_UNKNOWN,true,"String %s not as expected %s", + timeStr, testTime1Str); + return 5; + } + psFree(timeStr); + + // Verify return string with valid time and leap second set + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = true; + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTime1StrLeap) != 0) { + psError(PS_ERR_UNKNOWN,true,"String %s not as expected %s", + timeStr, testTime1StrLeap); + return 6; + } + psFree(timeStr); + psFree(time); + + return 0; +} + +psS32 testTimeToTimeval(void) +{ + psTime* time = NULL; + struct timeval* timevalTime = NULL; + + // Attempt to convert with NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL time"); + timevalTime = psTimeToTimeval(time); + if(timevalTime != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 1; + } + + // Attempt to convert invalid time + time = psTimeAlloc(PS_TIME_UTC); + time->sec = 1; + time->nsec = 2e9; + time->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + timevalTime = psTimeToTimeval(time); + if( timevalTime != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time"); + return 2; + } + + // Attempt to convert invalid time + time->sec = -1; + time->nsec = 0; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + timevalTime = psTimeToTimeval(time); + if( timevalTime != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time"); + return 2; + } + + // Verify convert to timeval with valid time + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + timevalTime = psTimeToTimeval(time); + if(timevalTime->tv_sec != testTime1TimevalSec) { + psError(PS_ERR_UNKNOWN,true,"Timeval seconds %ld not as expectd %ld", + timevalTime->tv_sec,testTime1TimevalSec); + return 4; + } + if(timevalTime->tv_usec != testTime1TimevalUsec) { + psError(PS_ERR_UNKNOWN,true,"Timeval useconds %ld not as expected %ld", + timevalTime->tv_usec,testTime1TimevalUsec); + return 5; + } + + psFree(timevalTime); + psFree(time); + + return 0; +} + +psS32 testTimeFromMJD(void) +{ + psTime* time = NULL; + + // Attempt to convert valid time to psTime + time = psTimeFromMJD(testTime1MJDTAI); + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + time->type,PS_TIME_TAI); + return 1; + } + if(time->sec != testTime1SecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec,testTime1SecondsTAI); + return 2; + } + psFree(time); + + // Attempt to convert valid time before 1970 epoch + time = psTimeFromMJD(testTime4MJD); + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + time->type,PS_TIME_TAI); + return 3; + } + if(time->sec != testTime4SecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec,testTime4SecondsUTC); + return 4; + } + psFree(time); + + return 0; +} + +psS32 testTimeFromJD(void) +{ + psTime* time = NULL; + + // Attempt to convert valid time to psTime + time = psTimeFromJD(testTime1JDTAI); + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + time->type,PS_TIME_TAI); + return 1; + } + if(time->sec != testTime1SecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec,(long int)testTime1SecondsTAI); + return 2; + } + psFree(time); + + // Attempt to convert valid time before 1970 epoch + time = psTimeFromJD(testTime4JD); + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + time->type,PS_TIME_TAI); + return 3; + } + if(time->sec != testTime4SecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec,testTime4SecondsUTC); + return 4; + } + psFree(time); + + return 0; +} + +psS32 testTimeFromISO(void) +{ + psTime* time = NULL; + + // Attempt to convert NULL string + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL ISO string"); + time = psTimeFromISO(NULL, PS_TIME_TAI); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected for NULL ISO string"); + return 1; + } + + // Convert valid ISO string + time = psTimeFromISO(testTime1Str, PS_TIME_TAI); + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + time->type, PS_TIME_TAI); + return 2; + } + if(time->sec != testTime1SecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec,testTime1SecondsTAI); + return 3; + } + psFree(time); + + // Attempt to convert invalid ISO string + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid ISO string"); + time = psTimeFromISO("Here I am", PS_TIME_TAI); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected for invalid ISO string"); + return 4; + } + psFree(time); + + return 0; +} + +psS32 testTimeFromTimeval(void) +{ + psTime* time = NULL; + struct timeval* timevalTime = NULL; + + // Attempt to create psTime from NULL timeval ptr + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL timeval"); + time = psTimeFromTimeval(NULL); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL timeval ptr"); + return 1; + } + + // Convert valid timeval structure + timevalTime = (struct timeval*)psAlloc(sizeof(struct timeval)); + timevalTime->tv_sec = testTime1SecondsTAI; + timevalTime->tv_usec = testTime1NanosecondsTAI / 1000; + time = psTimeFromTimeval(timevalTime); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return value for valid timeval"); + return 2; + } + if(time->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"psTime type %d not as expected %d", + time->type, PS_TIME_TAI); + return 3; + } + if(time->sec != testTime1SecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + time->sec, testTime1SecondsTAI); + return 4; + } + if(time->nsec != testTime1NanosecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"psTime nanosec %ld not as expected %ld", + time->nsec, testTime1NanosecondsTAI); + return 5; + } + psFree(timevalTime); + psFree(time); + + return 0; +} + +psS32 testTimeFromTM(void) +{ + psTime* time = NULL; + struct tm* tmTime = NULL; + + // Attempt to convert from NULL tm structure ptr + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL tm ptr"); + time = psTimeFromTM(tmTime); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL tm ptr"); + return 1; + } + + // Verify convert for valid tm structure + tmTime = (struct tm*)psAlloc(sizeof(struct tm)); + tmTime->tm_year = testTime7TmYear; + tmTime->tm_mon = testTime7TmMon; + tmTime->tm_mday = testTime7TmDay; + tmTime->tm_hour = testTime7TmHour; + tmTime->tm_min = testTime7TmMin; + tmTime->tm_sec = testTime7TmSec; + time = psTimeFromTM(tmTime); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return value for valid tm structure"); + return 2; + } + if(time->sec != testTime7Seconds) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec, (long int)testTime7Seconds); + return 3; + } + if(time->nsec != testTime7Nanoseconds) { + psError(PS_ERR_UNKNOWN,true,"psTime nanoseconds %ld not as expected %ld", + time->nsec, testTime7Nanoseconds); + return 4; + } + psFree(tmTime); + psFree(time); + + // Verify convert for valid tm structure + tmTime = (struct tm*)psAlloc(sizeof(struct tm)); + tmTime->tm_year = testTime8TmYear; + tmTime->tm_mon = testTime8TmMon; + tmTime->tm_mday = testTime8TmDay; + tmTime->tm_hour = testTime8TmHour; + tmTime->tm_min = testTime8TmMin; + tmTime->tm_sec = testTime8TmSec; + time = psTimeFromTM(tmTime); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return value for valid tm structure"); + return 2; + } + if(time->sec != testTime8Seconds) { + psError(PS_ERR_UNKNOWN,true,"psTime seconds %ld not as expected %ld", + (long int)time->sec, (long int)testTime8Seconds); + return 3; + } + if(time->nsec != testTime8Nanoseconds) { + psError(PS_ERR_UNKNOWN,true,"psTime nanoseconds %ld not as expected %ld", + time->nsec, testTime8Nanoseconds); + return 4; + } + psFree(tmTime); + psFree(time); + + return 0; +} + +psS32 testTimeConvert(void) +{ + psTime* time1 = NULL; + psTime* time2 = NULL; + + // Attempt to convert NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + time2 = psTimeConvert(time1,PS_TIME_TAI); + // Verify return value is NULL + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL time specified"); + return 1; + } + + // Attempt to convert to invalid type + time1 = psTimeAlloc(PS_TIME_TAI); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid type"); + time2 = psTimeConvert(time1,-100); + // Verify return value is NULL + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for invalid type to convert to"); + return 2; + } + time1->type = PS_TIME_UTC; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid type"); + time2 = psTimeConvert(time1,-100); + // Verify return value is NULL + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for invalid type to convert to"); + return 2; + } + time1->type = PS_TIME_TT; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid type"); + time2 = psTimeConvert(time1,-100); + // Verify return value is NULL + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for invalid type to convert to"); + return 2; + } + time1->type = -100; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid type"); + time2 = psTimeConvert(time1,PS_TIME_TAI); + // Verify return value is NULL + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for invalid type to convert to"); + return 2; + } + + // Attempt to convert with invalid time nsec > 1e9 + time1->nsec = 2e9; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + time2 = psTimeConvert(time1,PS_TIME_TAI); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for invalid time specified"); + return 3; + } + + //Attempt to convert a time to the same type + time2 = NULL; + time1->sec = 1; + time1->nsec = 2; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_TAI); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion to same type"); + return 4; + } + // Verify time not changed + if((time2->sec != 1) || (time2->nsec != 2) || (time2->type != PS_TIME_TAI) || + (time2->leapsecond != false) ) { + psError(PS_ERR_UNKNOWN,true,"Time member changes when no change expected"); + return 5; + } + + // Attempt to convert a UTC time to a TAI + time2 = NULL; + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_TAI); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from UTC to TAI"); + return 6; + } + // Verify time type + if(time2->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_TAI); + return 7; + } + // Verify time is TAI as expected + if(time2->sec != testTime1SecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"TAI seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsTAI); + return 7; + } + if(time2->nsec != testTime1NanosecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"TAI nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsTAI); + return 8; + } + + // Attempt to convert a UTC time to a TT + time2 = NULL; + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_TT); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from UTC to TT"); + return 6; + } + // Verify time type + if(time2->type != PS_TIME_TT) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_TT); + return 7; + } + // Verify time is TT as expected + if(time2->sec != testTime1SecondsTT) { + psError(PS_ERR_UNKNOWN,true,"TT seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsTT); + return 7; + } + if(time2->nsec != testTime1NanosecondsTT) { + psError(PS_ERR_UNKNOWN,true,"TT nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsTT); + return 8; + } + + // Attempt to convert a UTC time to UT1 + time2 = NULL; + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->type = PS_TIME_UTC; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_UT1); + if(time1 != time2) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from UTC to UT1"); + return 9; + } + // Verify time type + if(time2->type != PS_TIME_UT1) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_UT1); + return 7; + } + // Verify time is UT1 as expected + if(time2->sec != testTime1SecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsUT1); + return 9; + } + if(time2->nsec != testTime1NanosecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 nanoseconds = %d not as expected %d",time2->nsec, + testTime1NanosecondsUT1); + return 10; + } + + // Attempt to convert a TAI time to UTC + time2 = NULL; + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_UTC); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TAI to UTC"); + return 11; + } + // Verify time type + if(time2->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_UTC); + return 7; + } + // Verify time is UTC as expected + if(time2->sec != testTime1SecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"UTC seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsUTC); + return 12; + } + if(time2->nsec != testTime1NanosecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"UTC nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsUTC); + return 13; + } + + // Attempt to convert a TAI time to TT + time2 = NULL; + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_TT); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TAI to TT"); + return 14; + } + // Verify time type + if(time2->type != PS_TIME_TT) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_TT); + return 7; + } + // Verify time is TT as expected + if(time2->sec != testTime1SecondsTT) { + psError(PS_ERR_UNKNOWN,true,"TT seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsTT); + return 15; + } + if(time2->nsec != testTime1NanosecondsTT) { + psError(PS_ERR_UNKNOWN,true,"TT nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsTT); + return 16; + } + + // Attempt to convert a TAI time to UT1 + time2 = NULL; + time1->sec = testTime1SecondsTAI; + time1->nsec = testTime1NanosecondsTAI; + time1->type = PS_TIME_TAI; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_UT1); + if(time1 != time2) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TAI to UT1"); + return 9; + } + // Verify time type + if(time2->type != PS_TIME_UT1) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_UT1); + return 7; + } + // Verify time is UT1 as expected + if(time2->sec != testTime1SecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsUT1); + return 9; + } + if(time2->nsec != testTime1NanosecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 nanoseconds = %d not as expected %d",time2->nsec, + testTime1NanosecondsUT1); + return 10; + } + + // Attempt to convert a TT time to UTC + time2 = NULL; + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_UTC); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TT to UTC"); + return 17; + } + // Verify time type + if(time2->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_UTC); + return 7; + } + // Verify time is UTC as expected + if(time2->sec != testTime1SecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"UTC seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsUTC); + return 18; + } + if(time2->nsec != testTime1NanosecondsUTC) { + psError(PS_ERR_UNKNOWN,true,"UTC nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsUTC); + return 19; + } + + // Attempt to convert a TT time to TAI + time2 = NULL; + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_TAI); + if(time2 != time1) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TT to TAI"); + return 20; + } + // Verify time type + if(time2->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_TAI); + return 7; + } + // Verify time is TAI as expected + if(time2->sec != testTime1SecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"TAI seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsTAI); + return 21; + } + if(time2->nsec != testTime1NanosecondsTAI) { + psError(PS_ERR_UNKNOWN,true,"TT nanoseconds = %ld not as expected %ld",(long int)time2->nsec, + (long int)testTime1NanosecondsTAI); + return 22; + } + + // Attempt to convert a TT time to UT1 + time2 = NULL; + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time1->leapsecond = false; + time2 = psTimeConvert(time1,PS_TIME_UT1); + if(time1 != time2) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from TT to UT1"); + return 9; + } + // Verify time type + if(time2->type != PS_TIME_UT1) { + psError(PS_ERR_UNKNOWN,true,"Returned time type %d not as expected %d", + time2->type, PS_TIME_UT1); + return 7; + } + // Verify time is UT1 as expected + if(time2->sec != testTime1SecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 seconds = %ld not as expected %ld",(long int)time2->sec, + (long int)testTime1SecondsUT1); + return 9; + } + if(time2->nsec != testTime1NanosecondsUT1) { + psError(PS_ERR_UNKNOWN,true,"UT1 nanoseconds = %d not as expected %d",time2->nsec, + testTime1NanosecondsUT1); + return 10; + } + + // Attempt to convert from UT1 to TAI, UTC, TT + time2 = NULL; + time1->sec = 1; + time1->nsec = 2; + time1->type = PS_TIME_UT1; + time1->leapsecond = false; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message converting from UT1"); + time2 = psTimeConvert(time1,PS_TIME_UTC); + if(time2 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return time for conversion from UT1"); + return 23; + } + + psFree(time1); + + return 0; +} + +//psS32 testTimeOther(void) +//{ +// psTime *testTime; +// char *testString = "2004-07-21T18:22:24.272Z"; +// +// psLibInit("pslib.config"); +// +// Test time was taken at July 21, 2004 at 18:22:24.272044 +// testTime = (psTime*)psAlloc(sizeof(psTime)); +// testTime->sec = 1090434144; +// testTime->nsec = 272044000; +// testTime->type = PS_TIME_TAI; + +// Test O - psTime to LMST +// printPositiveTestHeader(stdout, "psTime", "Convert psTime time to LST"); +// char *testString2 = "2004-09-10T1:00:00.00Z"; +// psTime* testTime2 = NULL; +// testTime2 = psTimeFromISO(testString2); +// double dblTime = psTimeToLMST(testTime2, 1); +// printf("LST (rad): %lf\n", dblTime); +// psFree(testTime2); +// printFooter(stdout, "psTime", "Convert psTime time to LST", true); + + +// return 0; +//} Index: /branches/rel-1-1/psLib/test/astro/tst_psTime_02.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psTime_02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psTime_02.c (revision 12167) @@ -0,0 +1,368 @@ +/** @file tst_psTime_02.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) Convert psTime to Local Mean Sidereal Time (LMST) + * 2) Calculate leap second delta between times + * 3) Creation of psTime of type TT + * 4) Creation of psTime of type UTC + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-01-31 23:24:21 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define ERROR_TOL 0.001 + +static psS32 testTimeLMST(void); +static psS32 testTimeLeapSecondDelta(void); +static psS32 testTimeIsLeapSecond(void); +static psS32 testTimeFromTT(void); +static psS32 testTimeFromUTC(void); + +// Test Time 1 : May 9, 2005 00:00:00,0 +// MJD = 53499.000 +// JD = 2453499.5 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1115596900; +const psU32 testTime1NanosecondsUTC = 0; +// Expected LMST 15:09:18 +const psF64 testTime1LMST0 = 3.967604; + +// Test Time 2 : May 9, 1995 00:00:00,0 +// MJD = 49846.00 +// JD = 2449846.5 +// UTC Test Time 2 +const psS64 testTime2SecondsUTC = 799977600; +const psU32 testTime2NanosecondsUTC = 0; +// Expected leap second delta +const psS64 testTimeLeapSecondDelta1 = 3; + +// Test Time 3: Jan 1, 1999 00:00:00,0 +// MJD = 51179 +// JD = 2451179.5 +const psS64 testTime3SecondsUTC = 915148800; +const psU32 testTime3NanosecondsUTC = 0; + +testDescription tests[] = { + {testTimeLMST,1,"psTimeToLMST",0,false}, + {testTimeLeapSecondDelta,2,"psTimeLeapSecondDelta",0,false}, + {testTimeIsLeapSecond,6,"psTimeIsLeapSecond",0,false}, + {testTimeFromTT,66,"psTimeFromTT",0,false}, + {testTimeFromUTC,666,"psTimeFromUTC",0,false}, + {NULL} + }; +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + // Initialize library internal structures + psLibInit("pslib.config"); + + if( !runTestSuite(stderr,"psTime",tests,argc,argv)) { + return 1; + } + + // Clean up library + psLibFinalize(); + + return 0; +} + +psS32 testTimeLMST(void) +{ + psTime* time = NULL; + psF64 lmst = 0.0; + + // Attempt to get LMST with NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + lmst = psTimeToLMST(time,0); + if(!isnan(lmst)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NaN as expected %lf",lmst); + return 1; + } + + // Attempt to get LMST with valid test time + // Allocate test time + time = psTimeAlloc(PS_TIME_UTC); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + lmst = psTimeToLMST(time,0.0); + if(fabs(lmst-testTime1LMST0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"LMST %lf not as expected %lf",lmst,testTime1LMST0); + return 2; + } + + // Attempt to get LMST with invalid input time UT1 + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for incorrect type"); + time->type = PS_TIME_UT1; + lmst = psTimeToLMST(time,0.0); + if(!isnan(lmst)) { + psError(PS_ERR_UNKNOWN,true,"Did not return NaN as expected %lf",lmst); + return 3; + } + psFree(time); + + return 0; +} + +psS32 testTimeLeapSecondDelta(void) +{ + psTime* time1 = NULL; + psTime* time2 = NULL; + psS64 delta = 0; + + // Attempt to get delta with NULL time1 argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + delta = psTimeLeapSecondDelta(time1,time2); + if(delta != 0) { + psError(PS_ERR_UNKNOWN,true,"Delta of %ld not as expected 0",(long int)delta); + return 1; + } + + // Set test time 1 + time1 = psTimeAlloc(PS_TIME_UTC); + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + time1->leapsecond = false; + + // Attempt to get delta with NULL time2 argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + delta = psTimeLeapSecondDelta(time1,time2); + if(delta != 0) { + psError(PS_ERR_UNKNOWN,true,"Delta of %ld not as expected 0",(long int)delta); + return 2; + } + + // Set test time 2 with invalid time + time2 = psTimeAlloc(PS_TIME_UTC); + time2->sec = 0; + time2->nsec = 2e9; + time2->leapsecond = false; + + // Attempt to get delta with invalid time2 + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + delta = psTimeLeapSecondDelta(time1,time2); + if(delta != 0) { + psError(PS_ERR_UNKNOWN,true,"Delta of %ld not as expected 0",(long int)delta); + return 3; + } + + // Set test time 2 valid + time2->sec = testTime2SecondsUTC; + time2->nsec = testTime2NanosecondsUTC; + + // Set test time 1 invalid + time1->sec = 0; + time1->nsec = 2e9; + + // Attempt to get delta with invalid time1 + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + delta = psTimeLeapSecondDelta(time1,time2); + if(delta != 0) { + psError(PS_ERR_UNKNOWN,true,"Delta of %ld not as expected 0",(long int)delta); + return 4; + } + + // Set test time 1 to greater time + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + delta = psTimeLeapSecondDelta(time1,time2); + if(delta != testTimeLeapSecondDelta1) { + psError(PS_ERR_UNKNOWN,true,"Delta %ld not as expected %ld", + (long int)delta,(long int)testTimeLeapSecondDelta1); + return 5; + } + + // Set test time 1 to lesser time + delta = psTimeLeapSecondDelta(time2,time1); + if(delta != testTimeLeapSecondDelta1) { + psError(PS_ERR_UNKNOWN,true,"Delta %ld not as expected %ld", + (long int)delta,(long int)testTimeLeapSecondDelta1); + return 6; + } + + // Attempt to get delta with times equal + delta = psTimeLeapSecondDelta(time1,time1); + if(delta != 0) { + psError(PS_ERR_UNKNOWN,true,"Delta %ld not as expected 0",(long int)delta); + return 7; + } + + psFree(time2); + psFree(time1); + + return 0; +} + +psS32 testTimeIsLeapSecond(void) +{ + psTime* time = NULL; + psBool leapsecond = false; + + // Attempt to determine if leap second with NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL time"); + leapsecond = psTimeIsLeapSecond(time); + if(leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 0",leapsecond); + return 1; + } + + // Set time + time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + time->leapsecond = false; + + // Attempt to determine if leap second with non-UTC time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid type"); + leapsecond = psTimeIsLeapSecond(time); + if(leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 0",leapsecond); + return 2; + } + + // Set time to UTC + time->type = PS_TIME_UTC; + + // Attempt to determine if leap second with valid time + leapsecond = psTimeIsLeapSecond(time); + if(leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not a expected 0",leapsecond); + return 3; + } + + // Set time to UTC with leap second + time->sec = testTime3SecondsUTC; + time->nsec = testTime3NanosecondsUTC; + leapsecond = psTimeIsLeapSecond(time); + if(!leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 1",leapsecond); + // return 4; + } + + // Set time to 1 second before a known leap second + time->sec--; + leapsecond = psTimeIsLeapSecond(time); + if(leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 0",leapsecond); + return 5; + } + + // Set time to 1 second after a known leap second + time->sec +=2; + leapsecond = psTimeIsLeapSecond(time); + if(leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 0",leapsecond); + return 6; + } + + psFree(time); + + return 0; +} + +psS32 testTimeFromTT(void) +{ + psTime* time = NULL; + + // Attempt to create psTime with invalid time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + time = psTimeFromTT(0,2e9); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 1; + } + + // Attempt to create psTime with valid time + time = psTimeFromTT(testTime1SecondsUTC,testTime1NanosecondsUTC); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return NULL when not expected"); + return 2; + } + if(time->type != PS_TIME_TT) { + psError(PS_ERR_UNKNOWN,true,"Type of time object %d not as expected %d", + time->type,PS_TIME_TT); + return 3; + } + if((time->sec != testTime1SecondsUTC) || (time->nsec != testTime1NanosecondsUTC)) { + psError(PS_ERR_UNKNOWN,true,"Seconds %ld nanoseconds %d not as expected seconds %ld nanoseconds %d", + (long int)time->sec,time->nsec,(long int)testTime1SecondsUTC,testTime1NanosecondsUTC); + return 4; + } + psFree(time); + + return 0; +} + +psS32 testTimeFromUTC(void) +{ + psTime* time = NULL; + + // Attempt to create psTime with invalid time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid time"); + time = psTimeFromUTC(0,2e9,true); + if(time != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL as expected"); + return 1; + } + + // Attempt to create psTime with valid non-leapsecond time and leapsecond flag true + time = psTimeFromUTC(testTime1SecondsUTC,testTime1NanosecondsUTC,true); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return NULL when not expected"); + return 2; + } + if(time->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"Type of time object %d not as expected %d", + time->type,PS_TIME_UTC); + return 3; + } + if((time->sec != testTime1SecondsUTC) || (time->nsec != testTime1NanosecondsUTC)) { + psError(PS_ERR_UNKNOWN,true,"Seconds %ld nanoseconds %d not as expected seconds %ld nanoseconds %d", + (long int)time->sec,time->nsec,(long int)testTime1SecondsUTC,testTime1NanosecondsUTC); + return 4; + } + if(time->leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 0",time->leapsecond); + return 5; + } + psFree(time); + + // Attempt to create psTime with valid leapsecond time but leapsecond flag false + time = psTimeFromUTC(testTime3SecondsUTC,testTime3NanosecondsUTC,false); + if(time == NULL) { + psError(PS_ERR_UNKNOWN,true,"Return NULL when not expected"); + return 6; + } + if(time->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"Type of time object %d not as expected %d", + time->type,PS_TIME_UTC); + return 7; + } + if((time->sec != testTime3SecondsUTC) || (time->nsec != testTime3NanosecondsUTC)) { + psError(PS_ERR_UNKNOWN,true,"Seconds %ld nanoseconds %d not as expected seconds %ld nanoseconds %d", + (long int)time->sec,time->nsec,(long int)testTime1SecondsUTC,testTime1NanosecondsUTC); + return 8; + } + if(!time->leapsecond) { + psError(PS_ERR_UNKNOWN,true,"Leapsecond flag %d not as expected 1",time->leapsecond); + return 9; + } + + + psFree(time); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/astro/tst_psTime_03.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psTime_03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psTime_03.c (revision 12167) @@ -0,0 +1,505 @@ +/** @file tst_psTime_03.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * 1) psTimeMath invalid times + * 2) psTimeMath valid time of different types + * 3) psTimeDelta valid times with different types + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-06-27 20:33:22 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" +#include + +#define ERROR_TOL 0.001 + +static psS32 testTimeMath(void); +static psS32 testTimeDelta(void); +static psS32 testTimeConvert1(void); + +// Test Time 1 : May 9, 2005 00:00:00,0 +// MJD = 53499.00 +// JD = 2453499.5 +// UTC Test Time 1 +const psS64 testTime1SecondsUTC = 1115596900; +const psU32 testTime1NanosecondsUTC = 0; +// TAI Test Time 1 +const psS64 testTime1SecondsTAI = 1115596932; +const psU32 testTime1NanosecondsTAI = 0; +// TT Test Time 1 +const psS64 testTime1SecondsTT = 1115596964; +const psU32 testTime1NanosecondsTT = 184000000; +// UT1 Test Time 1 +const psS64 testTime1SecondsUT1 = 1115596900; +const psU32 testTime1NanosecondsUT1 = 184000000; +// Delta 1 +const psF64 deltaTime1 = -15.5; +// Expected UTC Time 1 +const psS64 newTestTime1SecondsUTC = 1115596884; +const psU32 newTestTime1NanosecondsUTC = 500000000; +// Expected TAI Time 1 +const psS64 newTestTime1SecondsTAI = 1115596916; +const psU32 newTestTime1NanosecondsTAI = 500000000; +// Delta 2 +const psF64 deltaTime2 = 123.066; +// Expected TT Time 1 w/ delta 2 +const psS64 newTestTime1SecondsTT = 1115597087; +const psU32 newTestTime1NanosecondsTT = 250000000; +// Expected UT1 Time 1 w/ delta 2 +const psS64 newTestTime1SecondsUT1 = 1115597023; +const psU32 newTestTime1NanosecondsUT1 = 250000000; + +// Test Time 2 : Dec. 31 1998 23:59:45,0 +// MJD = 51178.99983 +// JD = 2451179.49983 +// UTC Test Time 1 +const psS64 testTime2SecondsUTC = 915148785; +const psU32 testTime2NanosecondsUTC = 0; +// Delta 3 +const psF64 deltaTime3 = 30.0; +// Expected UTC Time +const psS64 newTestTime2SecondsUTC = 915148814; +const psU32 newTestTime2NanosecondsUTC = 0; + +// Appendix B time conversion tests +// +#define APPB_TESTS 8 +const psS64 testTimeBSeconds[APPB_TESTS] = + { + 915148829, + 915148829, + 915148830, + 915148830, + 915148831, + 915148831, + 915148832, + 915148832 + }; +const psU32 testTimeBNanoseconds[APPB_TESTS] = + { + 0, + 500000000, + 0, + 500000000, + 0, + 500000000, + 0, + 500000000 + }; +const psBool testTimeBLeapsecond[APPB_TESTS] = + { + false, + false, + false, + false, + true, + true, + false, + false + }; +// Expected results +const char* testTimeBStrUTC[APPB_TESTS] = + { + "1998-12-31T23:59:58.0Z", + "1998-12-31T23:59:58.5Z", + "1998-12-31T23:59:59.0Z", + "1998-12-31T23:59:59.5Z", + "1998-12-31T23:59:60.0Z", + "1998-12-31T23:59:60.5Z", + "1999-01-01T00:00:00.0Z", + "1999-01-01T00:00:00.5Z" + }; +const char* testTimeBStrTAI[APPB_TESTS] = + { + "1999-01-01T00:00:29.0Z", + "1999-01-01T00:00:29.5Z", + "1999-01-01T00:00:30.0Z", + "1999-01-01T00:00:30.5Z", + "1999-01-01T00:00:31.0Z", + "1999-01-01T00:00:31.5Z", + "1999-01-01T00:00:32.0Z", + "1999-01-01T00:00:32.5Z" + }; +const char* testTimeBStrTT[APPB_TESTS] = + { + "1999-01-01T00:01:01.1Z", + "1999-01-01T00:01:01.6Z", + "1999-01-01T00:01:02.1Z", + "1999-01-01T00:01:02.6Z", + "1999-01-01T00:01:03.1Z", + "1999-01-01T00:01:03.6Z", + "1999-01-01T00:01:04.1Z", + "1999-01-01T00:01:04.6Z" + }; +const char* testTimeBStrUT1[APPB_TESTS] = + { + "1998-12-31T23:59:58.7Z", + "1998-12-31T23:59:59.2Z", + "1998-12-31T23:59:59.7Z", + "1998-12-31T23:59:60.2Z", + "1998-12-31T23:59:60.7Z", + "1999-01-01T00:00:00.2Z", + "1999-01-01T00:00:00.7Z", + "1999-01-01T00:00:01.2Z" + }; + +// Test Time B1 : Dec 31, 1998 23:59:58,0 +// MJD = 51178.99998 +// JD = 2451179.49998 +//const psS64 testTimeB1SecondsUTC = 915148798; +//const psU32 testTimeB1NanosecondsUTC = 0; +// Expected ISO times +//const char testTimeB1StrUTC[] = "1998-12-31T23:59:58,0Z"; +//const char testTimeB1StrTAI[] = "1999-01-01T00:00:29,0Z"; +//const char testTimeB1StrTT[] = "1999-01-01T00:01:01,1Z"; +//const char testTimeB1StrUT1[] = "1998-12-31T23:59:57,7Z"; +// +// Test Time B2 : Dec 31, 1998 23:59:58,5 +// +// +//const psS64 testTimeB2SecondsUTC = 915148798; +//const psU32 testTimeB2NanosecondsUTC = 500000000; +// Expected ISO times +//const char testTimeB2StrUTC[] = "1998-12-31T23:59:58,5Z"; +//const char testTimeB2StrTAI[] = "1991-01-01T00:00:29,5Z"; +//const char testTimeB2StrTT[] = "1999-01-01T00:01:01,6Z"; +//const char testTimeB2StrUT1[] = "1998-12-31T23:59:58,2Z"; + +testDescription tests[] = { + {testTimeMath,1,"psTimeMath",0,false}, + {testTimeDelta,2,"psTimeDelta",0,false}, + {testTimeConvert1,666,"psTimeConvert",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + // Initialize library internal structures + psLibInit("pslib.config"); + + if( !runTestSuite(stderr,"psTime",tests,argc,argv)) { + return 1; + } + + // Clean up library + psLibFinalize(); + + return 0; +} + +psS32 testTimeMath(void) +{ + psTime* time = NULL; + psTime* newTime = NULL; + + // Attempt to perform math operation on NULL time + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL time"); + if(psTimeMath(time,-1.1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL time"); + return 1; + } + + // Set up input time with invalid nanoseconds + time = psTimeAlloc(PS_TIME_UTC); + time->sec = 0; + time->nsec = 2e9; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid time"); + if(psTimeMath(time,-1.1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid time"); + return 2; + } + + // Set up input time with valid time + time->sec = testTime1SecondsUTC; + time->nsec = testTime1NanosecondsUTC; + newTime = psTimeMath(time,deltaTime1); + if(newTime == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return"); + return 3; + } + if(newTime->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"New time type %d not as expected %d", + newTime->type,PS_TIME_UTC); + return 4; + } + if((newTime->sec != newTestTime1SecondsUTC) || (newTime->nsec != newTestTime1NanosecondsUTC)) { + psError(PS_ERR_UNKNOWN,true,"UTC sec %ld nsec %d not as expected sec %ld nsec %d", + (long int)newTime->sec,newTime->nsec,(long int)newTestTime1SecondsUTC, + newTestTime1NanosecondsUTC); + return 5; + } + psFree(newTime); + + // Set up input time with valid TAI time + time->sec = testTime1SecondsTAI; + time->nsec = testTime1NanosecondsTAI; + time->type = PS_TIME_TAI; + newTime = psTimeMath(time,deltaTime1); + if(newTime == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return"); + return 3; + } + if(newTime->type != PS_TIME_TAI) { + psError(PS_ERR_UNKNOWN,true,"New time type %d not as expected %d", + newTime->type,PS_TIME_TAI); + return 4; + } + if((newTime->sec != newTestTime1SecondsTAI) || (newTime->nsec != newTestTime1NanosecondsTAI)) { + psError(PS_ERR_UNKNOWN,true,"TAI sec %ld nsec %d not as expected sec %ld nsec %d", + (long int)newTime->sec,newTime->nsec,(long int)newTestTime1SecondsTAI, + newTestTime1NanosecondsTAI); + return 5; + } + psFree(newTime); + + // Set up input time with valid TT time + time->sec = testTime1SecondsTT; + time->nsec = testTime1NanosecondsTT; + time->type = PS_TIME_TT; + newTime = psTimeMath(time,deltaTime2); + if(newTime == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return"); + return 3; + } + if(newTime->type != PS_TIME_TT) { + psError(PS_ERR_UNKNOWN,true,"New time type %d not as expected %d", + newTime->type,PS_TIME_TT); + return 4; + } + if((newTime->sec != newTestTime1SecondsTT) || (newTime->nsec != newTestTime1NanosecondsTT)) { + psError(PS_ERR_UNKNOWN,true,"TT sec %ld nsec %d not as expected sec %ld nsec %d", + (long int)newTime->sec,newTime->nsec,(long int)newTestTime1SecondsTT, + newTestTime1NanosecondsTT); + return 5; + } + psFree(newTime); + + // Set up input time with valid TT time + time->sec = testTime1SecondsUT1; + time->nsec = testTime1NanosecondsUT1; + time->type = PS_TIME_UT1; + newTime = psTimeMath(time,deltaTime2); + if(newTime == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return"); + return 3; + } + if(newTime->type != PS_TIME_UT1) { + psError(PS_ERR_UNKNOWN,true,"New time type %d not as expected %d", + newTime->type,PS_TIME_UT1); + return 4; + } + if((newTime->sec != newTestTime1SecondsUT1) || (newTime->nsec != newTestTime1NanosecondsUT1)) { + psError(PS_ERR_UNKNOWN,true,"UT1 sec %ld nsec %d not as expected sec %ld nsec %d", + (long int)newTime->sec,newTime->nsec,(long int)newTestTime1SecondsUT1, + newTestTime1NanosecondsUT1); + return 5; + } + psFree(newTime); + + // Set up input time with valid UTC time and delt which crosses leap second + time->sec = testTime2SecondsUTC; + time->nsec = testTime2NanosecondsUTC; + time->type = PS_TIME_UTC; + newTime = psTimeMath(time,deltaTime3); + if(newTime == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return"); + return 3; + } + if(newTime->type != PS_TIME_UTC) { + psError(PS_ERR_UNKNOWN,true,"New time type %d not as expected %d", + newTime->type,PS_TIME_UTC); + return 4; + } + if((newTime->sec != newTestTime2SecondsUTC) || (newTime->nsec != newTestTime2NanosecondsUTC)) { + psError(PS_ERR_UNKNOWN,true,"UTC sec %ld nsec %d not as expected sec %ld nsec %d", + (long int)newTime->sec,newTime->nsec,(long int)newTestTime2SecondsUTC, + newTestTime2NanosecondsUTC); + return 5; + } + psFree(newTime); + + psFree(time); + + return 0; +} + +psS32 testTimeDelta(void) +{ + psTime* time1 = NULL; + psTime* time2 = NULL; + psF64 delta = 0.0; + + // Attempt to get delta with time1 NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL time"); + delta = psTimeDelta(time1,time2); + if(fabs(delta-0.0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for NULL time argument"); + return 1; + } + + // Set time 1 + time1 = psTimeAlloc(PS_TIME_UTC); + + // Attempt to get delta with time2 NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL time"); + delta = psTimeDelta(time1,time2); + if(fabs(delta-0.0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for NULL time argument"); + return 2; + } + + // Set time 2 + time2 = psTimeAlloc(PS_TIME_UTC); + + // Set time1 invalid + time1->sec = 0; + time1->nsec = 2e9; + // Attempt to get delta with time1 invalid + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid time"); + delta = psTimeDelta(time1,time2); + if(fabs(delta-0.0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for invalid time argument"); + return 3; + } + + // Set time 1 valid + time1->sec = testTime1SecondsUTC; + time1->nsec = testTime1NanosecondsUTC; + + // Set time 2 invalid + time2->sec = 0; + time2->nsec = 2e9; + // Attempt to get delta with time2 invalid + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid time"); + delta = psTimeDelta(time1,time2); + if(fabs(delta-0.0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for invalid time argument"); + return 4; + } + + // Set time 2 valid but different type + time2->sec = newTestTime1SecondsUTC; + time2->nsec = newTestTime1NanosecondsUTC; + time2->type = PS_TIME_TAI; + // Attempt to get delta with different time types + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for incorrect type"); + delta = psTimeDelta(time1,time2); + if(fabs(delta-0.0) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for invalid time argument"); + return 5; + } + + // Set time 2 to same as time 1 + time2->type = PS_TIME_UTC; + // Attempt to get delta with valid times of the same type + delta = psTimeDelta(time2,time1); + if(fabs(delta-deltaTime1) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Delta %lf not as expected %lf", + delta,deltaTime1); + return 6; + } + + // Set time 1 and 2 as different times with same type + time1->sec = testTime1SecondsTT; + time1->nsec = testTime1NanosecondsTT; + time1->type = PS_TIME_TT; + time2->sec = newTestTime1SecondsTT; + time2->nsec = newTestTime1NanosecondsTT; + time2->type = PS_TIME_TT; + // Attempt to get delta with valid times of the same type + delta = psTimeDelta(time2,time1); + if(fabs(delta-deltaTime2) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Delta %lf not as expected %lf", + delta,deltaTime2); + return 7; + } + + // Set time 1 and 2 as different times with same type + time1->sec = testTime2SecondsUTC; + time1->nsec = testTime2NanosecondsUTC; + time1->type = PS_TIME_UTC; + time2->sec = newTestTime2SecondsUTC; + time2->nsec = newTestTime2NanosecondsUTC; + time2->type = PS_TIME_UTC; + // Attempt to get delta with valid times of the same type + delta = psTimeDelta(time2,time1); + if(fabs(delta-deltaTime3) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Delta %lf not as expected %lf", + delta,deltaTime3); + return 7; + } + + psFree(time1); + psFree(time2); + + return 0; +} + +psS32 testTimeConvert1(void) +{ + psTime* time = NULL; + char* timeStr = NULL; + + for(psS32 i = 0; i < APPB_TESTS; i++) { + + // Initialize time for test time B1 + time = psTimeAlloc(PS_TIME_TAI); + time->sec = testTimeBSeconds[i]; + time->nsec = testTimeBNanoseconds[i]; + + // Verify TAI ISO string + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrTAI[i]) != 0) { + psError(PS_ERR_UNKNOWN,true,"TAI ISO string %s not as expected %s",timeStr,testTimeBStrTAI[i]); + return i+1; + } + psFree(timeStr); + + time = psTimeConvert(time,PS_TIME_TT); + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrTT[i]) != 0) { + psError(PS_ERR_UNKNOWN,true,"TT ISO string %s not as expected %s",timeStr,testTimeBStrTT[i]); + return i+10; + } + psFree(timeStr); + + // Verify UTC ISO string + time = psTimeConvert(time,PS_TIME_UTC); + time->leapsecond = testTimeBLeapsecond[i]; + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrUTC[i]) != 0) { + if(strncmp(timeStr,"1999-01-01T00:00:60.0Z", 10) != 0) { + psError(PS_ERR_UNKNOWN,true,"UTC ISO string %s not as expected %s",timeStr,testTimeBStrUTC[i]); + return i+20; + } + } + psFree(timeStr); + + time = psTimeConvert(time,PS_TIME_UT1); + timeStr = psTimeToISO(time); + if(strcmp(timeStr,testTimeBStrUT1[i]) != 0) { + if(strncmp(timeStr,"1999-01-01T00:00:60.2Z", 10) != 0) { + psError(PS_ERR_UNKNOWN,true,"UT1 ISO string %s not as expected %s",timeStr,testTimeBStrUT1[i]); + return i+30; + } + } + psFree(timeStr); + + psFree(time); + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/astro/tst_psTime_04.c =================================================================== --- /branches/rel-1-1/psLib/test/astro/tst_psTime_04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/astro/tst_psTime_04.c (revision 12167) @@ -0,0 +1,177 @@ +/** @file tst_psTime_04.c + * + * @brief Test driver for psTime functions + * + * This test driver contains the following tests for psTime: + * Test A - Initialize time + * Test B - Attempt to open non-existant time config file + * Test C - Attempt to open non-existant time data files + * Test D - Attempt to read incorrect number of files + * Test E - Attempt to read incorrect number of from values + * Test F - Attempt to read data file with typo in number + * Test G - Free data + * Test H - Attempt to use all timer functions + * Test I - Tidal Corrections to UT1-UTC + * + * @author Ross Harman, MHPCC + * @author Eric Van Alst, MHPCC + * @author David Robbins, MHPCC + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-01-31 23:24:21 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include "config.h" + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testTimeInit1(void); +static psS32 testTimeInit2(void); +static psS32 testTimeInit3(void); +static psS32 testTimeInit4(void); +static psS32 testTimeInit5(void); +static psS32 testTimeInit6(void); +static psS32 testTimer1(void); +static psS32 testTideUT1Corr(void); + +testDescription tests[] = { + {testTimeInit1,1,"p_psTimeInit",0,false}, + {testTimeInit2,2,"p_psTimeInit",0,false}, + {testTimeInit3,3,"p_psTimeInit",0,false}, + {testTimeInit4,4,"p_psTimeInit",0,false}, + {testTimeInit5,5,"p_psTimeInit",0,false}, + {testTimeInit6,6,"p_psTimeInit",0,false}, + {testTimer1,8,"psTimer",0,false}, + {testTideUT1Corr,9,"psTime_TideUT1Corr",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + if(!runTestSuite(stderr,"psTime",tests,argc,argv)) { + return 1; + } + + return 0; +} + +psS32 testTimeInit1(void) +{ + // Test A - Initialize time + psLibInit("pslib.config"); + psLibFinalize(); + + return 0; +} + +psS32 testTimeInit2(void) +{ + // Test B - Attempt to open non-existant time config file + psLibInit("zzz"); + + return 0; +} + +psS32 testTimeInit3(void) +{ + // Test C - Attempt to open non-existant time data files + psLibInit("test.psTime.config1"); + psLibFinalize(); + + return 0; +} + +psS32 testTimeInit4(void) +{ + // Test D - Attempt to read incorrect number of files + psLibInit("test.psTime.config2"); + psLibFinalize(); + + return 0; +} + +psS32 testTimeInit5(void) +{ + // Test E - Attempt to read incorrect number of from values + psLibInit("test.psTime.config3"); + psLibFinalize(); + + return 0; +} + +psS32 testTimeInit6(void) +{ + // Test F - Attempt to read data file with typo in number + psLibInit("test.psTime.config4"); + psLibFinalize(); + + return 0; +} + +psS32 testTimer1(void) +{ + psF64 testTime = 0.0; + psF64 testTime2 = 0.0; + psF64 testTime3 = 0.0; + + if ( !psTimerStart("newTime") ) { + printf("TimerStart Failed\n"); + return 1; + } + testTime = psTimerMark("newTime"); + if (testTime == 0.0) { + printf("TimerMark Failed\n"); + return 2; + } + testTime2 = psTimerClear("newTime"); + if (testTime2 == 0.0) { + printf("TimerClear Failed\n"); + return 3; + } + psTimerStart("newTime"); + testTime3 = psTimerStop(); + if (testTime3 == 0.0) { + printf("TimerStop Failed\n"); + return 4; + } + return 0; +} + +psS32 testTideUT1Corr(void) +{ + psTime *empty = NULL; + psTime *tide = NULL; + psTime *noTide = psTimeAlloc(PS_TIME_UTC); + noTide->sec = 1049160600; + noTide->nsec = 0; + noTide->leapsecond = false; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + empty = psTime_TideUT1Corr(tide); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psTime_TideUT1Corr failed to return NULL for NULL input time.\n"); + return 1; + } + + empty = psTime_TideUT1Corr(noTide); + if (empty->sec != 1049160599 || empty->nsec != 656981971) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psTime_TideUT1Corr failed to return correct values.\n"); + printf("\nsec = %ld, nsec = %u\n", (long int)empty->sec, empty->nsec); + return 2; + } + + if (!p_psTimeFinalize()) { + return 3; + } + + psFree(empty); + psFree(noTide); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/db/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/db/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/db/.cvsignore (revision 12167) @@ -0,0 +1,10 @@ +temp +.deps +.libs +Makefile +Makefile.in +tst_psDB +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/db/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/db/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/db/Makefile.am (revision 12167) @@ -0,0 +1,39 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psDB + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* core core.* *~ *.bb *.bbg *.da gmon.out + +clean-local: + mysql test -e "drop table1" 2> /dev/null || \ + mysql test -e "drop table2" 2> /dev/null || \ + mysql test -e "drop table3" 2> /dev/null || \ + mysql test -e "drop table4" 2> /dev/null || \ + mysql test -e "drop table5" 2> /dev/null || \ + mysql test -e "drop table6" 2> /dev/null || \ + mysql test -e "drop table7" 2> /dev/null || \ + mysql test -e "drop table8" 2> /dev/null || \ + mysql test -e "drop table9" 2> /dev/null || \ + mysql test -e "drop table10" 2> /dev/null || \ + mysql test -e "drop table11" 2> /dev/null || \ + true + +test: check Index: /branches/rel-1-1/psLib/test/db/tap_psDB.c =================================================================== --- /branches/rel-1-1/psLib/test/db/tap_psDB.c (revision 12167) +++ /branches/rel-1-1/psLib/test/db/tap_psDB.c (revision 12167) @@ -0,0 +1,2161 @@ +/** @file tap_psDB.c + * + * @brief Contains the tests for psDB.[ch] + * + * @author Aaron Culliney, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 23:56:12 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "tap.h" +#include "pstap.h" + +#include "pslib.h" + +#define STR_1 "hello world!" +#define STR_2 "foobar" +#define S32_1 1974 +#define S32_2 -18 +#define F32_1 3.14159 +#define F32_2 3.33 +#define F64_1 2.7182818 +#define F64_2 1.23456789 +#define B_1 TRUE +#define B_2 FALSE + +#define ERROR_TOL 0.001 + +#define CONST_ROW_1_STR "randrow1" +#define CONST_ROW_1_S32 12345 +#define CONST_ROW_1_F32 9876.5 +#define CONST_ROW_1_F64 456.75 +#define CONST_ROW_1_BOOL TRUE + +#define CONST_ROW_2_STR "randrow2" +#define CONST_ROW_2_S32 2345 +#define CONST_ROW_2_F32 876.5 +#define CONST_ROW_2_F64 56.75 +#define CONST_ROW_2_BOOL FALSE + +#define TAB_COL_0_NAME "key_string" +#define TAB_COL_1_NAME "key_s32" +#define TAB_COL_2_NAME "key_f32" +#define TAB_COL_3_NAME "key_f64" +#define TAB_COL_4_NAME "key_bool" +#define TAB_COL_5_NAME "key_s32_0" + +#define HOST "localhost" +#define USER "test" +#define PASSWD "" +#define DBNAME "test" +#define PORT 0 + +int main(int argc, char* argv[]) +{ + plan_tests(2); + + // Initialize database connection with test database + psDB *dbh = psDBInit(HOST, USER, PASSWD, DBNAME, PORT); + ok(dbh, "open a database handle"); + if (!dbh) { + done(); + } + + done(); +} + +#if 0 +psMetadata *_get_CreateTableMetadata( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", "90000", // value used to determine size of field + TAB_COL_1_NAME, "Primary Key", 0, // values unused here ... + TAB_COL_2_NAME, "Key", 0.0, + TAB_COL_3_NAME, "", 0.0, + TAB_COL_4_NAME, "", FALSE, + TAB_COL_5_NAME, "Key,AUTO_INCREMENT", 0); +} + +psMetadata *_get_RowMetadataValues(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", val0, + TAB_COL_1_NAME, "comment-s32", val1, + TAB_COL_2_NAME, "comment-f32", val2, + TAB_COL_3_NAME, "comment-f64", val3, + TAB_COL_4_NAME, "comment-bool", val4, + NULL, NULL, 0.0); +} + +psMetadata *_get_RowMetadata( + const char *key0, const char *comm0, const char *val0, + const char *key1, const char *comm1, psS32 val1, + const char *key2, const char *comm2, psF32 val2, + const char *key3, const char *comm3, psF64 val3, + const char *key4, const char *comm4, psBool val4, + const char *key5, const char *comm5, psS32 val5) +{ + psMetadata *md = NULL; + psMetadataItem *str=NULL, *s32_0=NULL, *s32=NULL, *f32=NULL, *f64=NULL, *b; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + if (key0 != NULL) { + str = psMetadataItemAllocStr(key0, comm0, val0); + } + if (key5 != NULL) { + s32_0 = psMetadataItemAllocS32(key5, comm5, val5); + } + s32 = psMetadataItemAllocS32 (key1, comm1, val1); + f32 = psMetadataItemAllocF32 (key2, comm2, val2); + f64 = psMetadataItemAllocF64 (key3, comm3, val3); + b = psMetadataItemAllocBool(key4, comm4, val4); + + if ( ((key0 != NULL) && (str == NULL)) || (s32 == NULL) || (f32 == NULL) || (f64 == NULL) || (b == NULL) || + ((key5 != NULL) && (s32_0 == NULL)) ) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem(s) in %s!", __func__ ); + return NULL; + } + if ( ((key0 != NULL) && !psMetadataAddItem(md, str, 0, 0)) || + !psMetadataAddItem(md, s32, 0, 0) || !psMetadataAddItem(md, f32, 0, 0) || + !psMetadataAddItem(md, f64, 0, 0) || !psMetadataAddItem(md, b, 0, 0) || + ((key5 != NULL) && !psMetadataAddItem(md, s32_0, 0, 0))) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + if (str != NULL) { + psFree(str); + } + psFree(s32); + psFree(f32); + psFree(f64); + psFree(b); + if (s32_0 != NULL) { + psFree(s32_0); + } + + return md; +} + +psMetadata *_get_const_row1( void ) +{ + char buf[32]; + snprintf(buf, 32, "%s", CONST_ROW_1_STR ); + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", buf, + TAB_COL_1_NAME, "comment-s32", CONST_ROW_1_S32, + TAB_COL_2_NAME, "comment-f32", CONST_ROW_1_F32, + TAB_COL_3_NAME, "comment-f64", CONST_ROW_1_F64, + TAB_COL_4_NAME, "comment-bool", CONST_ROW_1_BOOL, + NULL, NULL, 0.0); +} + +psMetadata *_get_const_row2( void ) +{ + char buf[32]; + snprintf(buf, 32, "%s",CONST_ROW_2_STR); + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", buf, + TAB_COL_1_NAME, "comment-s32", CONST_ROW_2_S32, + TAB_COL_2_NAME, "comment-f32", CONST_ROW_2_F32, + TAB_COL_3_NAME, "comment-f64", CONST_ROW_2_F64, + TAB_COL_4_NAME, "comment-bool", CONST_ROW_2_BOOL, + NULL, NULL, 0.0); +} + +psMetadata *_get_row( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", STR_1, + TAB_COL_1_NAME, "comment-s32", S32_1, + TAB_COL_2_NAME, "comment-f32", F32_1, + TAB_COL_3_NAME, "comment-f64", F64_1, + TAB_COL_4_NAME, "comment-bool", B_1, + NULL, NULL, 0.0); +} + +psMetadata *_get_invalid_row( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", STR_1, + TAB_COL_1_NAME, "comment-s32", S32_1, + "key_999", "comment-f32", F32_1, + TAB_COL_3_NAME, "comment-f64", F64_1, + TAB_COL_4_NAME, "comment-bool", B_1, + NULL, NULL, 0.0); +} + +psMetadata *_get_where( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32(TAB_COL_1_NAME, "", S32_1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_invalid_where( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32("col999", "", S32_1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_where_bad_value( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32(TAB_COL_1_NAME, "", S32_1 + 1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_update_values(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4) +{ + return _get_RowMetadataValues(val0, val1, val2, val3, val4); +} + +bool _check_row(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,STR_1)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,STR_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != S32_1)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, S32_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-F32_1)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, F32_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-F64_1)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,F64_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != B_1)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, B_1); + return false; + } + + return returnValue; +} + +bool _check_row_update(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,STR_2)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,STR_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != S32_2)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, S32_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-F32_2)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, F32_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-F64_2)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,F64_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != B_2)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, B_2); + return false; + } + + return returnValue; +} + +bool _check_const_row1(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,CONST_ROW_1_STR)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,CONST_ROW_1_STR); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != CONST_ROW_1_S32)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, CONST_ROW_1_S32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-CONST_ROW_1_F32)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, CONST_ROW_1_F32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-CONST_ROW_1_F64)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,CONST_ROW_1_F64); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != CONST_ROW_1_BOOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, CONST_ROW_1_BOOL); + return false; + } + + return returnValue; +} + +bool _check_const_row2(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,CONST_ROW_2_STR)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,CONST_ROW_2_STR); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != CONST_ROW_2_S32)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, CONST_ROW_2_S32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-CONST_ROW_2_F32)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, CONST_ROW_2_F32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-CONST_ROW_2_F64)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,CONST_ROW_2_F64); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != CONST_ROW_2_BOOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, CONST_ROW_2_BOOL); + return false; + } + + return returnValue; +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel( PS_LOG_INFO ); + + srand(time(NULL)); + + return ( ! runTestSuite( stderr, "psDB", tests, argc, argv ) ); +} + +// Testpoint #841, initialize/break-down MySQL connection. +psS32 TPDBInit( void ) +{ + psDB *dbh = NULL; + + // Initialize database with valid arguments + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL to be returned for valid arguments"); + return 1; + } + + // Cleanup database/connection with valid psDB object + psDBCleanup(dbh); + + // Attempt to initialize database with invalid arguments + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid host"); + dbh = psDBInit("xxx",NULL,NULL,NULL); + if(dbh != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL psDB with invalid arguments"); + return 2; + } + + // Attempt cleanup database/connection with NULL psDB object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database objec"); + psDBCleanup(NULL); + + return 0; +} + +// Testpoint #842, psDBChange shall change databases. +psS32 TPDBChange( void ) +{ + psDB *dbh = NULL; + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for valid arguments"); + return 1; + } + + // Attempt to change database with valid arguments + if(!psDBChange(dbh, dbname)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for valid arguments"); + return 2; + } + + // Attemp to change database to invalid database name + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid database"); + if(psDBChange(dbh,"abc")) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return true for unknown database name"); + return 3; + } + + // Cleanup database connection + psDBCleanup(dbh); + + // Attempt to change database with NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for null database object"); + if(psDBChange(NULL,dbname)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return true for NULL database object"); + return 4; + } + + return 0; +} + +// Testpoint #843, psDBCreateTable shall create tables in the test database ... +psS32 TPDBCreateTable( void ) +{ + psDB *dbh = NULL; + const char* table = "table1"; + + // Create metadata for table definition + psMetadata *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for valid argument in database connection"); + return 1; + } + + // Attempt to create database table with valid arguments + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for valid arguments"); + return 2; + } else { + // Drop the table from the test database + psDBDropTable(dbh, table); + } + + // Free metadata definition of table + psFree(md); + + // Attempt to create table with NULL table definition + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL parameter"); + if(psDBCreateTable(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL metadata object"); + return 3; + } + + // Attempt to create table with NULL connection + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL parameter"); + if(psDBCreateTable(NULL, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL database object"); + return 4; + } + + // Close/cleanup database connection + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #844, psDBDropTable shall remove tables in the test database ... +psS32 TPDBDropTable( void ) +{ + psDB *dbh = NULL; + const char* table = "table2"; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return to initialize database"); + return 1; + } + + // Create table in database + if(psDBCreateTable(dbh, table, md)) { + + // Drop table with valid arguments + if(!psDBDropTable(dbh, table)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for valid arguments"); + return 2; + } + + // insert should fail since the table has been drop from database + psLogMsg( __func__, PS_LOG_INFO, "psDBDropTable: insert should fail here...\n" ); + row = _get_row(); + if (psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect to successfully insert row into dropped table"); + return 3; + } + psFree(row); + } else { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false to create table"); + return 4; + } + + // Attempt to drop table from NULL psDB object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database object"); + if(psDBDropTable(NULL,table)) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for NULL database object"); + return 5; + } + + // Attempt to drop table from valid psDB but invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBDropTable(dbh,"table99")) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for invalid table"); + return 6; + } + + // Attempt to drop table from valid psDB but NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBDropTable(dbh,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for NULL table"); + return 7; + } + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #845, TPDBSelectColumn shall write/select a column from a test table ... +psS32 TPDBSelectColumn( void ) +{ + psDB *dbh = NULL; + const char* table = "table3"; + psArray *ary = NULL; + char *ptr=NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL to initialize database connection"); + return 1; + } + + // Create database table + if(!psDBCreateTable(dbh,table,md)) { + psError(PS_ERR_UNKNOWN,true,"Unable to create database table for testing"); + psDBCleanup(dbh); + return 2; + } + + // Insert known constant row #1 + row = _get_const_row1(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 3; + } + psFree(row); + + // Insert known constant row #2 + row = _get_const_row2(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 4; + } + psFree(row); + + // Insert known row + row = _get_row(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 5; + } + psFree(row); + + // Select all items in column key_string with valid arguments + ary = psDBSelectColumn(dbh, table, TAB_COL_0_NAME, 0); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value of NULL"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 6; + } + + // Verify array contents + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Array number of items %d not equal to expected %d", + ary->n, 3); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 60; + } + ptr = psArrayGet(ary, 2); + if (strcmp(ptr, CONST_ROW_1_STR)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 2,CONST_ROW_1_STR,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 7; + } + // psFree(ptr); + ptr = psArrayGet(ary, 1); + if (strcmp(ptr, CONST_ROW_2_STR)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 1,CONST_ROW_2_STR,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 8; + } + // psFree(ptr); + ptr = psArrayGet(ary, 0); + if (strcmp(ptr, STR_1)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 0,STR_1,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 9; + } + // psFree(ptr); + psFree(ary); + + // Select items in column key_bool with limit 10 and valid arguments + ary = psDBSelectColumn(dbh, table, TAB_COL_4_NAME, 10); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value of NULL"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 10; + } + + // Verify array contents + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Array number of items %d not equal to expected %d", + ary->n, 3); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 100; + } + ptr = psArrayGet(ary, 2); + if(atoi(ptr) != CONST_ROW_1_BOOL) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 2,CONST_ROW_1_BOOL,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 11; + } + // psFree(ptr); + ptr = psArrayGet(ary, 1); + if(atoi(ptr) != CONST_ROW_2_BOOL) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 1,CONST_ROW_2_BOOL,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 12; + } + // psFree(ptr); + ptr = psArrayGet(ary, 0); + if(atoi(ptr) != B_1) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 0,B_1,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 13; + } + // psFree(ptr); + psFree(ary); + + // Attempt to select columns from NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBSelectColumn(NULL,table,"key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for selecting from NULL database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 14; + } + + // Attempt to select column from NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL table"); + if(psDBSelectColumn(dbh,NULL,"key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL table"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 15; + } + + // Attempt to select column from invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + if(psDBSelectColumn(dbh,"table99","key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for invalid table"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 16; + } + + // Attempt to select invalid column from valid database object and valid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column"); + if(psDBSelectColumn(dbh,table,"key_null",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for invalid column"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 17; + } + + // Clean up table and memory + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #846, TPDBSelectColumnNum shall write/select a column from a test table ... +psS32 TPDBSelectColumnNum( void ) +{ + psDB *dbh = NULL; + const char* table = "table4"; + psVector *vec = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected NULL return to initialize database"); + return 1; + } + + // Create database table for test + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create table"); + return 2; + } + + // Initialize database table with known rows + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Use valid arguments to select column with numeric values to return vector + vec = psDBSelectColumnNum(dbh, table, TAB_COL_1_NAME, PS_TYPE_S32, 0); + + // Verify vector returned + if (vec == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return with valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + // Verify vector values + if(vec->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector size not equal to 3"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + if(vec->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector type not equal to PS_TYPE_S32"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 31; + } + if ((vec->data.S32)[0] != S32_1) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.S32[0], S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + if ((vec->data.S32)[1] != CONST_ROW_2_S32) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 1,vec->data.S32[1], CONST_ROW_2_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + if ((vec->data.S32)[2] != CONST_ROW_1_S32) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 2,vec->data.S32[2], CONST_ROW_1_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(vec); + + // Use valid arguments to select column with numeric values to return vector + vec = psDBSelectColumnNum(dbh, table, TAB_COL_4_NAME, PS_TYPE_BOOL, 0); + + // Verify vector returned + if (vec == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return with valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // Verify vector values + if(vec->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector size not equal to 3"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + if(vec->type.type != PS_TYPE_BOOL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector type not equal to PS_TYPE_BOOL"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + if ((vec->data.U8)[0] != B_1) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],B_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + if ((vec->data.U8)[1] != CONST_ROW_2_BOOL) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],CONST_ROW_2_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + if ((vec->data.U8)[2] != CONST_ROW_1_BOOL) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],CONST_ROW_1_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + psFree(vec); + + // Attempt to select columns from NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL database object"); + if(psDBSelectColumnNum(NULL,table,TAB_COL_4_NAME,PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 13; + } + + // Attempt to select columns from NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL table"); + if(psDBSelectColumnNum(dbh,NULL,TAB_COL_4_NAME,PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 14; + } + + // Attempt to select columns from invalid column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid column"); + if(psDBSelectColumnNum(dbh,table,"key_999",PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL column"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 15; + } + + // Attempt to select columns from invalid column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid type"); + if(psDBSelectColumnNum(dbh,table,TAB_COL_0_NAME,0,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with invalid type"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 16; + } + + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #847, TPDBSelectRows shall write/select data from a test table ... +psS32 TPDBSelectRows( void ) +{ + int i; + psDB *dbh = NULL; + const char* table = "table5"; + psArray *ary=NULL, *ary1=NULL, *ary2=NULL; + psMetadataItem *item = NULL; + + // Create database table definition + psMetadata *where=NULL, *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected NULL return to initialize database"); + return 1; + } + + psDBDropTable(dbh,table); + // Create database table for test + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create table"); + psDBCleanup(dbh); + return 2; + } + + // Initialize database table with known rows + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Generate valid where clause + where = _get_where(); + + // Select rows with non limit + ary1 = psDBSelectRows(dbh, table, where, 0); + + // Select rows with a limit + ary2 = psDBSelectRows(dbh, table, where, 1); + psFree(where); + + // Cycle through both arrays to verify results + for (i=0; i<2; i++) { + ary = i ? ary2 : ary1; + + // Verify return array not NULL + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 1; + } + + if(ary->n != 1) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n, 1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + + // Get metadata which contains row from array + row = (psMetadata*)psArrayGet(ary, 0); + + // Get key_s32 item from metadata + item = psMetadataLookup(row, TAB_COL_1_NAME); + if (item == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not find key_s32 item in row metadata"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + if (item->data.S32 != S32_1) { + psError(PS_ERR_UNKNOWN,true,"Row item %d not as expected %d", + item->data.S32,S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Get key_bool item from metadata + item = psMetadataLookup(row, TAB_COL_4_NAME); + if (item == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not find key_bool item in row metadata"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + if (item->data.B != B_1) { + psError(PS_ERR_UNKNOWN,true,"Row item %d not as expected %d", + item->data.S32,S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + psFree(ary); + // psFree(row); + } + + // Attempt to select rows with NULL database object + psLogMsg(__func__,PS_LOG_INFO, + "Following should generate an error message for NULL database object"); + if(psDBSelectRows(NULL, table, where, 0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Attempt to select rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBSelectRows(dbh, NULL, where, 0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Select rows with no where specified + ary1 = psDBSelectRows(dbh, table, NULL, 0); + if(ary1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return using NULL where"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + if(ary1->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Rows return %d not as expected %d", + ary->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + psFree(ary1); + + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #848, TPDBInsertOneRow shall write a row of data into a test table ... +psS32 TPDBInsertOneRow( void ) +{ + psDB *dbh = NULL; + const char* table = "table6"; + psMetadata *invalidRow = NULL; + psArray* ary = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for database initialization"); + return 1; + } + + // Create database table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create database"); + psDBCleanup(dbh); + return 2; + } + + // Insert a single row with valid arguments + row = _get_const_row1(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting row w/ valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + // Verify row was added to table + ary = psDBSelectRows(dbh,table,NULL,0); + if(ary->n != 1) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n,1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + psFree(ary); + + // Insert a single row with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBInsertOneRow(NULL,table,row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + // Insert a single row which has column which does not match table + invalidRow = _get_invalid_row(); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column item"); + if(psDBInsertOneRow(dbh,table,invalidRow)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid column item"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + + // Insert a single row with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + if(psDBInsertOneRow(dbh,"table999",row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Insert a single row with NULL row + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL row"); + if(psDBInsertOneRow(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for NULL row"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + + psFree(row); + psFree(invalidRow); + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #849, TPDBInsertRows shall write rows of data into a test table ... +psS32 TPDBInsertRows( void ) +{ + psDB *dbh = NULL; + const char* table = "table7"; + psArray *rowSet = NULL; + psArray* dumpRowSet = NULL; + psMetadataItem *item=NULL; + psArray* ary = NULL; + psMetadata* invalidRow = NULL; + psArray* invalidRowSet = NULL; + + //Create database table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for initializing database connection"); + return 1; + } + + // Create database table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for creating table"); + psDBCleanup(dbh); + return 2; + } + + // Create array of row elements + rowSet = psArrayAlloc(3); + rowSet->n = 0; + + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + // Insert rows with valid arguments + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting rows w/ valid args"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Verify row was added to table + ary = psDBSelectRows(dbh,table,NULL,0); + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + psFree(ary); + + // extra checks ... + dumpRowSet = psDBDumpRows(dbh, table); + if (dumpRowSet == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + // Get first row from array + row = (psMetadata*)psArrayGet(dumpRowSet, 0); + // Verify contents for column key_s32 + item = psMetadataLookup(row, TAB_COL_1_NAME); + if ((item == NULL) || (item->data.S32 != S32_1)) { + psError(PS_ERR_UNKNOWN,true,"Column value %d not as expected %d", + item->data.S32, S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + // Verify contents for column key_bool + item = psMetadataLookup(row, TAB_COL_4_NAME); + if ((item == NULL) || (item->data.B != B_1)) { + psError(PS_ERR_UNKNOWN,true,"Column value %d not as expected %d", + item->data.B, B_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(dumpRowSet); + // psFree(row); + + // Insert rows with NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + if(psDBInsertRows(NULL,table,rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + + // Insert rows with NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBInsertRows(dbh,NULL,rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 70; + } + + // Insert rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBInsertRows(dbh,"table999",rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for invalid table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Insert rows with NULL array of rows to be inserted + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL row array"); + if(psDBInsertRows(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL row array"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + // Insert a single row which has column which does not match table + invalidRow = _get_invalid_row(); + // Create array of invalid row element + invalidRowSet = psArrayAlloc(1); + invalidRowSet->n = 0; + psArrayAdd(invalidRowSet, 0, invalidRow); + psFree(invalidRow); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column item"); + if(psDBInsertRows(dbh,table,invalidRowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid column item"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + psFree(invalidRowSet); + + psFree(rowSet); + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #850, TPDBDumpRows shall dump all rows from a test table ... +psS32 TPDBDumpRows( void ) +{ + psDB *dbh = NULL; + const char* table = "table8"; + psArray *ary = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL from initializing database"); + return 1; + } + + // Create table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false from creating table"); + psDBCleanup(dbh); + return 2; + } + + // Insert known data rows into table + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Dump row with valid parameters + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Rows dumped %d not as expected %d", + ary->n, 3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + // psFree(row); + row = (psMetadata*)psArrayGet(ary, 1); + if(!_check_const_row2(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + // psFree(row); + row = (psMetadata*)psArrayGet(ary, 2); + if(!_check_const_row1(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // psFree(row); + psFree(ary); + + // Attempt to dump row with database NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBDumpRows(NULL,table)!=NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return non-NULL for NULL database specified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to dump row with table NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL table"); + if(psDBDumpRows(dbh,NULL)!=NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return non-NULL for NULL table specified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #851, TPDBDumpCols shall dump all cols from a test table ... +psS32 TPDBDumpCols( void ) +{ + psDB* dbh = NULL; + const char* table = "table9"; + psMetadata* row = NULL; + psMetadata* meta = NULL; + psMetadata* md = NULL; + psMetadataIterator* mdIter = NULL; + psMetadataItem* mdItem = NULL; + int itemNum = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return to initialize database"); + return 1; + } + + // Create database table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false to create test table"); + psDBCleanup(dbh); + return 2; + } + + // Add row with known data values + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Dump columns with valid arguments + meta = psDBDumpCols(dbh, table); + mdIter = psMetadataIteratorAlloc(meta,PS_LIST_HEAD,NULL); + + // Verify contents of metadata returned + if (meta == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value NULL for dumpCols with valid args"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + if(meta->list->n != 6) { + psError(PS_ERR_UNKNOWN,true,"Number of cols = %d not as expected %d", + meta->list->n,6); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify the metadata items + itemNum = 0; + while ((mdItem = psMetadataGetAndIncrement(mdIter)) != NULL) { + switch(itemNum) { + case 0: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_5_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_5_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 1: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_BOOL) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_4_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_4_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 2: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_F64); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_3_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_3_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 3: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_F32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_2_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_2_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 4: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_1_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_1_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 5: + if(mdItem->type != PS_DATA_ARRAY) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_ARRAY); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psArray*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psArray*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_0_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_0_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + + default: + break; + } + itemNum++; + } + psFree(mdIter); + psFree(meta); + + // Attempt to dump columns from NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + if(psDBDumpCols(NULL,table) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL when dumping columns from NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + + // Attempt to dump columns for NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBDumpCols(dbh,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL when dumping columns from NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + + + psDBDropTable(dbh, table); + + psFree(md); + + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #852, TPDBUpdateRows shall update rows in a test table ... +psS32 TPDBUpdateRows( void ) +{ + psDB* dbh = NULL; + const char* table = "table10"; + psArray* ary = NULL; + psArray* rowSet = NULL; + psMetadata* row = NULL; + psMetadata* where = NULL; + psMetadata* updates = NULL; + psMetadata* md = NULL; + int chgRows = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL when initializing database"); + return 1; + } + + // Create test table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false to create test table"); + psDBCleanup(dbh); + return 2; + } + + // Create array to hold rows to be added to test table + rowSet = psArrayAlloc(3); + rowSet->n = 0; + + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + // Insert rows into test table + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Create where metadata to specify update - only one row + where = _get_where(); + + // Create update metadata to specify values + updates = _get_update_values(STR_2, S32_2, F32_2, F64_2, B_2); + + // Perform database update with valid parameters + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != 1) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return other than 1 for valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify row contents after update + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row_update(row)) { + psError(PS_ERR_UNKNOWN,true,"Update row not verified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + // psFree(row); + psFree(ary); + + // Attempt to update rows with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + chgRows = psDBUpdateRows(NULL,table,where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + + // Attempt to update rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + chgRows = psDBUpdateRows(dbh,"table999",where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to update rows with NULL updates + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL updates"); + chgRows = psDBUpdateRows(dbh,table,where,NULL); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to update rows with invalid where specifying non-existent column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid where"); + psFree(where); + where = _get_invalid_where(); + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + // Attempt to update rows with bad value in where statement + psFree(where); + where = _get_where_bad_value(); + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + // Verify row contents after update - no change + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row_update(row)) { + psError(PS_ERR_UNKNOWN,true,"Update row not verified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + // psFree(row); + psFree(ary); + + psFree(updates); + psFree(where); + psFree(rowSet); + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #853, TPDBDeleteRows shall update rows in a test table ... +psS32 TPDBDeleteRows( void ) +{ + psDB* dbh = NULL; + const char* table = "table11"; + psArray* ary = NULL; + psArray* rowSet = NULL; + psMetadata* where = NULL; + psMetadata* row = NULL; + psMetadata* md = NULL; + int chgRows = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for initialize database"); + return 1; + } + + // Create test table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for creating test table"); + psDBCleanup(dbh); + return 2; + } + + // Create known data rows to put into test table + rowSet = psArrayAlloc(3); + rowSet->n = 0; + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting data into table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Create where clause to specify the row to remove + where = _get_where(); + + // Delete row with valid arguments + chgRows = psDBDeleteRows(dbh,table,where,10); + if(chgRows != 1) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows,1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + if (ary->n != 2) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(ary); + + // Attempt to delete row just deleted again + chgRows = psDBDeleteRows(dbh,table,where,10); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + if (ary->n != 2) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + psFree(ary); + + // Attempt to delete row with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + chgRows = psDBDeleteRows(NULL,table,where,10); + if(chgRows > 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, -1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + + // Attempt to delete row with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + chgRows = psDBDeleteRows(dbh,"table999",where,10); + if(chgRows > 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, -1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + + // Attempt to delete row with NULL where - deletes all rows + chgRows = psDBDeleteRows(dbh,table,NULL,10); + if(chgRows != 2) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, 2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary != NULL && ary->n != 0) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 14; + } + psFree(ary); + + // Attempt to delete row with NULL where - deletes all rows from an empty table + chgRows = psDBDeleteRows(dbh,table,NULL,10); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %d", + chgRows, 0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 15; + } + + psFree(where); + psFree(rowSet); + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// +// Tests for psDBCreate and psDBDrop can only be executed if the user +// has system admin privileges for the SQL server so the tests have been +// commented out. +// +// Testpoint #XXX, psDBCreate shall create a new test database. +//psS32 TPDBCreate( void ) +//{ +// const char *test_db = "ps_test_db"; +// psS32 failed = 0; +// psDB *dbh = NULL; +// +// dbh = _init_psDB(); +// if (dbh == NULL) { +// return 1; +// } +// +// psLogMsg( __func__, PS_LOG_INFO, "psDBCreate shall create new new test database.\n" ); +// +// failed = ! psDBCreate(dbh, test_db); +// if (!failed) { +// psDBDrop(dbh, test_db); +// } +// +// psDBCleanup(dbh); +// +// return failed; +//} + +// Testpoint #XXX, psDBDrop shall create a new test database. +//psS32 TPDBDrop( void ) +//{ +// const char *test_db = "ps_test_db"; +// psS32 failed = 0; +// psDB *dbh = NULL; +// +// dbh = _init_psDB(); +// if (dbh == NULL) { +// return 1; +// } +// +// psLogMsg( __func__, PS_LOG_INFO, "psDBDrop shall create/drop a new new test database.\n" ); +// +// failed = psDBCreate(dbh, test_db); +// if (!failed) { +// failed = ! psDBDrop(dbh, test_db); +// } +// +// psDBCleanup(dbh); +// +// return failed; +//} + +#endif Index: /branches/rel-1-1/psLib/test/db/tst_psDB.c =================================================================== --- /branches/rel-1-1/psLib/test/db/tst_psDB.c (revision 12167) +++ /branches/rel-1-1/psLib/test/db/tst_psDB.c (revision 12167) @@ -0,0 +1,2224 @@ +/** @file tst_psDB.c + * + * -*- mode: C; c-basic-indent: 4; tab-width: 8; indent-tabs-mode: nil -*- + * vim: set cindent ts=8 sw=4 expandtab: + * + * @brief Contains the tests for psDB.[ch] + * + * + * @author Aaron Culliney, MHPCC + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-04-20 01:13:11 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include +#include +#include +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" + +#define STR_1 "hello world!" +#define STR_2 "foobar" +#define S32_1 1974 +#define S32_2 -18 +#define F32_1 3.14159 +#define F32_2 3.33 +#define F64_1 2.7182818 +#define F64_2 1.23456789 +#define B_1 TRUE +#define B_2 FALSE + +#define ERROR_TOL 0.001 + +#define CONST_ROW_1_STR "randrow1" +#define CONST_ROW_1_S32 12345 +#define CONST_ROW_1_F32 9876.5 +#define CONST_ROW_1_F64 456.75 +#define CONST_ROW_1_BOOL TRUE + +#define CONST_ROW_2_STR "randrow2" +#define CONST_ROW_2_S32 2345 +#define CONST_ROW_2_F32 876.5 +#define CONST_ROW_2_F64 56.75 +#define CONST_ROW_2_BOOL FALSE + +#define TAB_COL_0_NAME "key_string" +#define TAB_COL_1_NAME "key_s32" +#define TAB_COL_2_NAME "key_f32" +#define TAB_COL_3_NAME "key_f64" +#define TAB_COL_4_NAME "key_bool" +#define TAB_COL_5_NAME "key_s32_0" + +static psDB *_init_psDB( void ); +static psMetadata *_get_CreateTableMetadata( void ); +static psMetadata *_get_RowMetadataValues(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4); +static psMetadata *_get_RowMetadata( + const char *key0, const char *comm0, const char *val0, + const char *key1, const char *comm1, psS32 val1, + const char *key2, const char *comm2, psF32 val2, + const char *key3, const char *comm3, psF64 val3, + const char *key4, const char *comm4, psBool val4, + const char *key5, const char *comm5, psS32 val5); +static psMetadata *_get_row( void ); +static psMetadata *_get_invalid_row( void ); +static psMetadata *_get_where( void ); +static psMetadata *_get_invalid_where( void ); +static psMetadata *_get_where_bad_value( void ); +static psMetadata *_get_update_values(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4); +static bool _check_row(psMetadata* row); +static bool _check_row_update(psMetadata* row); +static bool _check_const_row1(psMetadata* row); +static bool _check_const_row2(psMetadata* row); + +//static psS32 TPDBCreate( void ); +//static psS32 TPDBDrop( void ); +static psS32 TPDBInit( void ); +static psS32 TPDBChange( void ); +static psS32 TPDBCreateTable( void ); +static psS32 TPDBDropTable( void ); +static psS32 TPDBSelectColumn( void ); +static psS32 TPDBSelectColumnNum( void ); +static psS32 TPDBSelectRows( void ); +static psS32 TPDBInsertOneRow( void ); +static psS32 TPDBInsertRows( void ); +static psS32 TPDBDumpRows( void ); +static psS32 TPDBDumpCols( void ); +static psS32 TPDBUpdateRows( void ); +static psS32 TPDBDeleteRows( void ); + +testDescription tests[] = { + {TPDBInit, 841, "dbInit", 0, false}, + {TPDBChange, 842, "dbChange", 0, false}, + {TPDBCreateTable, 843, "dbCreateTable", 0, false}, + {TPDBDropTable, 844, "dbDropTable", 0, false}, + {TPDBSelectColumn, 845, "dbSelectColumn", 0, false}, + {TPDBSelectColumnNum,846, "dbSelectColumnNum", 0, false}, + {TPDBSelectRows, 847, "dbSelectRows", 0, false}, + {TPDBInsertOneRow, 848, "dbInsertOneRow", 0, false}, + {TPDBInsertRows, 849, "dbInsertRows", 0, false}, + {TPDBDumpRows, 850, "dbDumpRows", 0, false}, + {TPDBDumpCols, 851, "dbDumpCols", 0, false}, + {TPDBUpdateRows, 852, "dbUpdateRows", 0, false}, + {TPDBDeleteRows, 853, "dbDeleteRows", 0, false}, + //{TPDBCreate, -14, "dbCreate", 0, false}, + //{TPDBDrop, -15, "dbDrop", 0, false}, + {NULL} + }; + +static const char *host = "localhost"; +static const char *user = "test"; +static const char *passwd = ""; +static const char *dbname = "test"; + +// internal method to initialize DB +psDB *_init_psDB( void ) +{ + psDB *dbh = NULL; + + // Initialize database connection with test database + dbh = psDBInit(host, user, passwd, dbname); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not initialize DB connection in %s!", __func__ ); + } + + return dbh; +} + +psMetadata *_get_CreateTableMetadata( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", "90000", // value used to determine size of field + TAB_COL_1_NAME, "Primary Key", 0, // values unused here ... + TAB_COL_2_NAME, "Key", 0.0, + TAB_COL_3_NAME, "", 0.0, + TAB_COL_4_NAME, "", FALSE, + TAB_COL_5_NAME, "Key,AUTO_INCREMENT", 0); +} + +psMetadata *_get_RowMetadataValues(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", val0, + TAB_COL_1_NAME, "comment-s32", val1, + TAB_COL_2_NAME, "comment-f32", val2, + TAB_COL_3_NAME, "comment-f64", val3, + TAB_COL_4_NAME, "comment-bool", val4, + NULL, NULL, 0.0); +} + +psMetadata *_get_RowMetadata( + const char *key0, const char *comm0, const char *val0, + const char *key1, const char *comm1, psS32 val1, + const char *key2, const char *comm2, psF32 val2, + const char *key3, const char *comm3, psF64 val3, + const char *key4, const char *comm4, psBool val4, + const char *key5, const char *comm5, psS32 val5) +{ + psMetadata *md = NULL; + psMetadataItem *str=NULL, *s32_0=NULL, *s32=NULL, *f32=NULL, *f64=NULL, *b; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + if (key0 != NULL) { + str = psMetadataItemAllocStr(key0, comm0, val0); + } + if (key5 != NULL) { + s32_0 = psMetadataItemAllocS32(key5, comm5, val5); + } + s32 = psMetadataItemAllocS32 (key1, comm1, val1); + f32 = psMetadataItemAllocF32 (key2, comm2, val2); + f64 = psMetadataItemAllocF64 (key3, comm3, val3); + b = psMetadataItemAllocBool(key4, comm4, val4); + + if ( ((key0 != NULL) && (str == NULL)) || (s32 == NULL) || (f32 == NULL) || (f64 == NULL) || (b == NULL) || + ((key5 != NULL) && (s32_0 == NULL)) ) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem(s) in %s!", __func__ ); + return NULL; + } + if ( ((key0 != NULL) && !psMetadataAddItem(md, str, 0, 0)) || + !psMetadataAddItem(md, s32, 0, 0) || !psMetadataAddItem(md, f32, 0, 0) || + !psMetadataAddItem(md, f64, 0, 0) || !psMetadataAddItem(md, b, 0, 0) || + ((key5 != NULL) && !psMetadataAddItem(md, s32_0, 0, 0))) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + if (str != NULL) { + psFree(str); + } + psFree(s32); + psFree(f32); + psFree(f64); + psFree(b); + if (s32_0 != NULL) { + psFree(s32_0); + } + + return md; +} + +psMetadata *_get_const_row1( void ) +{ + char buf[32]; + snprintf(buf, 32, "%s", CONST_ROW_1_STR ); + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", buf, + TAB_COL_1_NAME, "comment-s32", CONST_ROW_1_S32, + TAB_COL_2_NAME, "comment-f32", CONST_ROW_1_F32, + TAB_COL_3_NAME, "comment-f64", CONST_ROW_1_F64, + TAB_COL_4_NAME, "comment-bool", CONST_ROW_1_BOOL, + NULL, NULL, 0.0); +} + +psMetadata *_get_const_row2( void ) +{ + char buf[32]; + snprintf(buf, 32, "%s",CONST_ROW_2_STR); + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", buf, + TAB_COL_1_NAME, "comment-s32", CONST_ROW_2_S32, + TAB_COL_2_NAME, "comment-f32", CONST_ROW_2_F32, + TAB_COL_3_NAME, "comment-f64", CONST_ROW_2_F64, + TAB_COL_4_NAME, "comment-bool", CONST_ROW_2_BOOL, + NULL, NULL, 0.0); +} + +psMetadata *_get_row( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", STR_1, + TAB_COL_1_NAME, "comment-s32", S32_1, + TAB_COL_2_NAME, "comment-f32", F32_1, + TAB_COL_3_NAME, "comment-f64", F64_1, + TAB_COL_4_NAME, "comment-bool", B_1, + NULL, NULL, 0.0); +} + +psMetadata *_get_invalid_row( void ) +{ + return _get_RowMetadata( + TAB_COL_0_NAME, "comment-string", STR_1, + TAB_COL_1_NAME, "comment-s32", S32_1, + "key_999", "comment-f32", F32_1, + TAB_COL_3_NAME, "comment-f64", F64_1, + TAB_COL_4_NAME, "comment-bool", B_1, + NULL, NULL, 0.0); +} + +psMetadata *_get_where( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32(TAB_COL_1_NAME, "", S32_1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_invalid_where( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32("col999", "", S32_1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_where_bad_value( void ) +{ + psMetadata *md = NULL; + psMetadataItem *s32=NULL; + + md = psMetadataAlloc(); + if (md == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadata in %s!", __func__ ); + return NULL; + } + s32 = psMetadataItemAllocS32(TAB_COL_1_NAME, "", S32_1 + 1); + if (s32 == NULL) { + psError(PS_ERR_UNKNOWN, true, "could not create psMetadataItem in %s!", __func__ ); + return NULL; + } + if (!psMetadataAddItem(md, s32, 0, 0)) { + psError(PS_ERR_UNKNOWN, true, "could not add psMetadataItem(s) to psMetadata in %s!", __func__ ); + return NULL; + } + + psFree(s32); + return md; +} + +psMetadata *_get_update_values(const char *val0, psS32 val1, psF32 val2, psF64 val3, psBool val4) +{ + return _get_RowMetadataValues(val0, val1, val2, val3, val4); +} + +bool _check_row(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,STR_1)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,STR_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != S32_1)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, S32_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-F32_1)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, F32_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-F64_1)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,F64_1); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != B_1)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, B_1); + return false; + } + + return returnValue; +} + +bool _check_row_update(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,STR_2)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,STR_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != S32_2)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, S32_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-F32_2)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, F32_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-F64_2)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,F64_2); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != B_2)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, B_2); + return false; + } + + return returnValue; +} + +bool _check_const_row1(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,CONST_ROW_1_STR)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,CONST_ROW_1_STR); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != CONST_ROW_1_S32)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, CONST_ROW_1_S32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-CONST_ROW_1_F32)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, CONST_ROW_1_F32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-CONST_ROW_1_F64)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,CONST_ROW_1_F64); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != CONST_ROW_1_BOOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, CONST_ROW_1_BOOL); + return false; + } + + return returnValue; +} + +bool _check_const_row2(psMetadata* row) +{ + bool returnValue = true; + psMetadataItem* item = NULL; + + item = psMetadataLookup(row,TAB_COL_0_NAME); + if((item==NULL) || (strcmp(item->data.V,CONST_ROW_2_STR)!=0)) { + psError(PS_ERR_UNKNOWN,true,"Column key_string item %s not as expected %s", + item->data.V,CONST_ROW_2_STR); + return false; + } + + item = psMetadataLookup(row,TAB_COL_1_NAME); + if((item==NULL) || (item->data.S32 != CONST_ROW_2_S32)) { + psError(PS_ERR_UNKNOWN,true,"Column key_s32 item %d not as expected %d", + item->data.S32, CONST_ROW_2_S32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_2_NAME); + if((item==NULL) || (fabs(item->data.F32-CONST_ROW_2_F32)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f32 item %f not as expected %f", + item->data.F32, CONST_ROW_2_F32); + return false; + } + + item = psMetadataLookup(row,TAB_COL_3_NAME); + if((item==NULL) || (fabs(item->data.F64-CONST_ROW_2_F64)>ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_f64 item %lf not as expected %lf", + item->data.F64,CONST_ROW_2_F64); + return false; + } + + item = psMetadataLookup(row,TAB_COL_4_NAME); + if((item==NULL) || (item->data.B != CONST_ROW_2_BOOL)) { + psError(PS_ERR_UNKNOWN,true,"Column key_bool item %d not as expected %d", + item->data.B, CONST_ROW_2_BOOL); + return false; + } + + return returnValue; +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel( PS_LOG_INFO ); + + srand(time(NULL)); + + return ( ! runTestSuite( stderr, "psDB", tests, argc, argv ) ); +} + +// Testpoint #841, initialize/break-down MySQL connection. +psS32 TPDBInit( void ) +{ + psDB *dbh = NULL; + + // Initialize database with valid arguments + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL to be returned for valid arguments"); + return 1; + } + + // Cleanup database/connection with valid psDB object + psDBCleanup(dbh); + + // Attempt to initialize database with invalid arguments + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid host"); + dbh = psDBInit("xxx",NULL,NULL,NULL); + if(dbh != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL psDB with invalid arguments"); + return 2; + } + + // Attempt cleanup database/connection with NULL psDB object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database objec"); + psDBCleanup(NULL); + + return 0; +} + +// Testpoint #842, psDBChange shall change databases. +psS32 TPDBChange( void ) +{ + psDB *dbh = NULL; + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for valid arguments"); + return 1; + } + + // Attempt to change database with valid arguments + if(!psDBChange(dbh, dbname)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for valid arguments"); + return 2; + } + + // Attemp to change database to invalid database name + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid database"); + if(psDBChange(dbh,"abc")) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return true for unknown database name"); + return 3; + } + + // Cleanup database connection + psDBCleanup(dbh); + + // Attempt to change database with NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for null database object"); + if(psDBChange(NULL,dbname)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return true for NULL database object"); + return 4; + } + + return 0; +} + +// Testpoint #843, psDBCreateTable shall create tables in the test database ... +psS32 TPDBCreateTable( void ) +{ + psDB *dbh = NULL; + const char* table = "table1"; + + // Create metadata for table definition + psMetadata *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for valid argument in database connection"); + return 1; + } + + // Attempt to create database table with valid arguments + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for valid arguments"); + return 2; + } else { + // Drop the table from the test database + psDBDropTable(dbh, table); + } + + // Free metadata definition of table + psFree(md); + + // Attempt to create table with NULL table definition + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL parameter"); + if(psDBCreateTable(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL metadata object"); + return 3; + } + + // Attempt to create table with NULL connection + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL parameter"); + if(psDBCreateTable(NULL, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL database object"); + return 4; + } + + // Close/cleanup database connection + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #844, psDBDropTable shall remove tables in the test database ... +psS32 TPDBDropTable( void ) +{ + psDB *dbh = NULL; + const char* table = "table2"; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return to initialize database"); + return 1; + } + + // Create table in database + if(psDBCreateTable(dbh, table, md)) { + + // Drop table with valid arguments + if(!psDBDropTable(dbh, table)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for valid arguments"); + return 2; + } + + // insert should fail since the table has been drop from database + psLogMsg( __func__, PS_LOG_INFO, "psDBDropTable: insert should fail here...\n" ); + row = _get_row(); + if (psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect to successfully insert row into dropped table"); + return 3; + } + psFree(row); + } else { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false to create table"); + return 4; + } + + // Attempt to drop table from NULL psDB object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database object"); + if(psDBDropTable(NULL,table)) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for NULL database object"); + return 5; + } + + // Attempt to drop table from valid psDB but invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBDropTable(dbh,"table99")) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for invalid table"); + return 6; + } + + // Attempt to drop table from valid psDB but NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBDropTable(dbh,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not return false as expected for NULL table"); + return 7; + } + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #845, TPDBSelectColumn shall write/select a column from a test table ... +psS32 TPDBSelectColumn( void ) +{ + psDB *dbh = NULL; + const char* table = "table3"; + psArray *ary = NULL; + char *ptr=NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL to initialize database connection"); + return 1; + } + + // Create database table + if(!psDBCreateTable(dbh,table,md)) { + psError(PS_ERR_UNKNOWN,true,"Unable to create database table for testing"); + psDBCleanup(dbh); + return 2; + } + + // Insert known constant row #1 + row = _get_const_row1(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 3; + } + psFree(row); + + // Insert known constant row #2 + row = _get_const_row2(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 4; + } + psFree(row); + + // Insert known row + row = _get_row(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Unable to add rows to test database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 5; + } + psFree(row); + + // Select all items in column key_string with valid arguments + ary = psDBSelectColumn(dbh, table, TAB_COL_0_NAME, 0); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value of NULL"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 6; + } + + // Verify array contents + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Array number of items %d not equal to expected %d", + ary->n, 3); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 60; + } + ptr = psArrayGet(ary, 2); + if (strcmp(ptr, CONST_ROW_1_STR)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 2,CONST_ROW_1_STR,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 7; + } + // psFree(ptr); + ptr = psArrayGet(ary, 1); + if (strcmp(ptr, CONST_ROW_2_STR)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 1,CONST_ROW_2_STR,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 8; + } + // psFree(ptr); + ptr = psArrayGet(ary, 0); + if (strcmp(ptr, STR_1)) { + psError(PS_ERR_UNKNOWN,true,"key_str column entry[%d] = %s not as expected %s", + 0,STR_1,ptr); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 9; + } + // psFree(ptr); + psFree(ary); + + // Select items in column key_bool with limit 10 and valid arguments + ary = psDBSelectColumn(dbh, table, TAB_COL_4_NAME, 10); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value of NULL"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 10; + } + + // Verify array contents + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Array number of items %d not equal to expected %d", + ary->n, 3); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 100; + } + ptr = psArrayGet(ary, 2); + if(atoi(ptr) != CONST_ROW_1_BOOL) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 2,CONST_ROW_1_BOOL,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 11; + } + // psFree(ptr); + ptr = psArrayGet(ary, 1); + if(atoi(ptr) != CONST_ROW_2_BOOL) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 1,CONST_ROW_2_BOOL,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 12; + } + // psFree(ptr); + ptr = psArrayGet(ary, 0); + if(atoi(ptr) != B_1) { + psError(PS_ERR_UNKNOWN,true,"key_bool column entry[%d] = %d not as expected %d", + 0,B_1,atoi(ptr)); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 13; + } + // psFree(ptr); + psFree(ary); + + // Attempt to select columns from NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBSelectColumn(NULL,table,"key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for selecting from NULL database"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 14; + } + + // Attempt to select column from NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL table"); + if(psDBSelectColumn(dbh,NULL,"key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL table"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 15; + } + + // Attempt to select column from invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + if(psDBSelectColumn(dbh,"table99","key_str",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for invalid table"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 16; + } + + // Attempt to select invalid column from valid database object and valid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column"); + if(psDBSelectColumn(dbh,table,"key_null",10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for invalid column"); + psDBDropTable(dbh, table); + psDBCleanup(dbh); + return 17; + } + + // Clean up table and memory + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #846, TPDBSelectColumnNum shall write/select a column from a test table ... +psS32 TPDBSelectColumnNum( void ) +{ + psDB *dbh = NULL; + const char* table = "table4"; + psVector *vec = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected NULL return to initialize database"); + return 1; + } + + // Create database table for test + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create table"); + return 2; + } + + // Initialize database table with known rows + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Use valid arguments to select column with numeric values to return vector + vec = psDBSelectColumnNum(dbh, table, TAB_COL_1_NAME, PS_TYPE_S32, 0); + + // Verify vector returned + if (vec == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return with valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + // Verify vector values + if(vec->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector size not equal to 3"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + if(vec->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector type not equal to PS_TYPE_S32"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 31; + } + if ((vec->data.S32)[0] != S32_1) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.S32[0], S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + if ((vec->data.S32)[1] != CONST_ROW_2_S32) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 1,vec->data.S32[1], CONST_ROW_2_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + if ((vec->data.S32)[2] != CONST_ROW_1_S32) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 2,vec->data.S32[2], CONST_ROW_1_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(vec); + + // Use valid arguments to select column with numeric values to return vector + vec = psDBSelectColumnNum(dbh, table, TAB_COL_4_NAME, PS_TYPE_BOOL, 0); + + // Verify vector returned + if (vec == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return with valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // Verify vector values + if(vec->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector size not equal to 3"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + if(vec->type.type != PS_TYPE_BOOL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return vector type not equal to PS_TYPE_BOOL"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + if ((vec->data.U8)[0] != B_1) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],B_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + if ((vec->data.U8)[1] != CONST_ROW_2_BOOL) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],CONST_ROW_2_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + if ((vec->data.U8)[2] != CONST_ROW_1_BOOL) { + psError(PS_ERR_UNKNOWN,true,"vector value[%d] = %d not as expected %d", + 0,vec->data.U8[0],CONST_ROW_1_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + psFree(vec); + + // Attempt to select columns from NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL database object"); + if(psDBSelectColumnNum(NULL,table,TAB_COL_4_NAME,PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 13; + } + + // Attempt to select columns from NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL table"); + if(psDBSelectColumnNum(dbh,NULL,TAB_COL_4_NAME,PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 14; + } + + // Attempt to select columns from invalid column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid column"); + if(psDBSelectColumnNum(dbh,table,"key_999",PS_TYPE_BOOL,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with NULL column"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 15; + } + + // Attempt to select columns from invalid column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid type"); + if(psDBSelectColumnNum(dbh,table,TAB_COL_0_NAME,0,10) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return with invalid type"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 16; + } + + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #847, TPDBSelectRows shall write/select data from a test table ... +psS32 TPDBSelectRows( void ) +{ + int i; + psDB *dbh = NULL; + const char* table = "table5"; + psArray *ary=NULL, *ary1=NULL, *ary2=NULL; + psMetadataItem *item = NULL; + + // Create database table definition + psMetadata *where=NULL, *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected NULL return to initialize database"); + return 1; + } + + psDBDropTable(dbh,table); + // Create database table for test + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create table"); + psDBCleanup(dbh); + return 2; + } + + // Initialize database table with known rows + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Generate valid where clause + where = _get_where(); + + // Select rows with non limit + ary1 = psDBSelectRows(dbh, table, where, 0); + + // Select rows with a limit + ary2 = psDBSelectRows(dbh, table, where, 1); + psFree(where); + + // Cycle through both arrays to verify results + for (i=0; i<2; i++) { + ary = i ? ary2 : ary1; + + // Verify return array not NULL + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 1; + } + + if(ary->n != 1) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n, 1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + + // Get metadata which contains row from array + row = (psMetadata*)psArrayGet(ary, 0); + + // Get key_s32 item from metadata + item = psMetadataLookup(row, TAB_COL_1_NAME); + if (item == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not find key_s32 item in row metadata"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + if (item->data.S32 != S32_1) { + psError(PS_ERR_UNKNOWN,true,"Row item %d not as expected %d", + item->data.S32,S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Get key_bool item from metadata + item = psMetadataLookup(row, TAB_COL_4_NAME); + if (item == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not find key_bool item in row metadata"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 2; + } + if (item->data.B != B_1) { + psError(PS_ERR_UNKNOWN,true,"Row item %d not as expected %d", + item->data.S32,S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + psFree(ary); + // psFree(row); + } + + // Attempt to select rows with NULL database object + psLogMsg(__func__,PS_LOG_INFO, + "Following should generate an error message for NULL database object"); + if(psDBSelectRows(NULL, table, where, 0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Attempt to select rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBSelectRows(dbh, NULL, where, 0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL return for NULL database object"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Select rows with no where specified + ary1 = psDBSelectRows(dbh, table, NULL, 0); + if(ary1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return using NULL where"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + if(ary1->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Rows return %d not as expected %d", + ary->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + psFree(ary1); + + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #848, TPDBInsertOneRow shall write a row of data into a test table ... +psS32 TPDBInsertOneRow( void ) +{ + psDB *dbh = NULL; + const char* table = "table6"; + psMetadata *invalidRow = NULL; + psArray* ary = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for database initialization"); + return 1; + } + + // Create database table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for create database"); + psDBCleanup(dbh); + return 2; + } + + // Insert a single row with valid arguments + row = _get_const_row1(); + if(!psDBInsertOneRow(dbh, table, row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting row w/ valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + // Verify row was added to table + ary = psDBSelectRows(dbh,table,NULL,0); + if(ary->n != 1) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n,1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + psFree(ary); + + // Insert a single row with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBInsertOneRow(NULL,table,row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + // Insert a single row which has column which does not match table + invalidRow = _get_invalid_row(); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column item"); + if(psDBInsertOneRow(dbh,table,invalidRow)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid column item"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + + // Insert a single row with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + if(psDBInsertOneRow(dbh,"table999",row)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + + // Insert a single row with NULL row + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL row"); + if(psDBInsertOneRow(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for NULL row"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + + psFree(row); + psFree(invalidRow); + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #849, TPDBInsertRows shall write rows of data into a test table ... +psS32 TPDBInsertRows( void ) +{ + psDB *dbh = NULL; + const char* table = "table7"; + psArray *rowSet = NULL; + psArray* dumpRowSet = NULL; + psMetadataItem *item=NULL; + psArray* ary = NULL; + psMetadata* invalidRow = NULL; + psArray* invalidRowSet = NULL; + + //Create database table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL for initializing database connection"); + return 1; + } + + // Create database table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for creating table"); + psDBCleanup(dbh); + return 2; + } + + // Create array of row elements + rowSet = psArrayAlloc(3); + rowSet->n = 0; + + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + // Insert rows with valid arguments + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting rows w/ valid args"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Verify row was added to table + ary = psDBSelectRows(dbh,table,NULL,0); + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Number of rows %d not as expected %d", + ary->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 30; + } + psFree(ary); + + // extra checks ... + dumpRowSet = psDBDumpRows(dbh, table); + if (dumpRowSet == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + // Get first row from array + row = (psMetadata*)psArrayGet(dumpRowSet, 0); + // Verify contents for column key_s32 + item = psMetadataLookup(row, TAB_COL_1_NAME); + if ((item == NULL) || (item->data.S32 != S32_1)) { + psError(PS_ERR_UNKNOWN,true,"Column value %d not as expected %d", + item->data.S32, S32_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + // Verify contents for column key_bool + item = psMetadataLookup(row, TAB_COL_4_NAME); + if ((item == NULL) || (item->data.B != B_1)) { + psError(PS_ERR_UNKNOWN,true,"Column value %d not as expected %d", + item->data.B, B_1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(dumpRowSet); + // psFree(row); + + // Insert rows with NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + if(psDBInsertRows(NULL,table,rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + + // Insert rows with NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBInsertRows(dbh,NULL,rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 70; + } + + // Insert rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + if(psDBInsertRows(dbh,"table999",rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for invalid table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Insert rows with NULL array of rows to be inserted + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL row array"); + if(psDBInsertRows(dbh,table,NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false for NULL row array"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + // Insert a single row which has column which does not match table + invalidRow = _get_invalid_row(); + // Create array of invalid row element + invalidRowSet = psArrayAlloc(1); + invalidRowSet->n = 0; + psArrayAdd(invalidRowSet, 0, invalidRow); + psFree(invalidRow); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid column item"); + if(psDBInsertRows(dbh,table,invalidRowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value true for invalid column item"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + psFree(invalidRowSet); + + psFree(rowSet); + psDBDropTable(dbh, table); + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #850, TPDBDumpRows shall dump all rows from a test table ... +psS32 TPDBDumpRows( void ) +{ + psDB *dbh = NULL; + const char* table = "table8"; + psArray *ary = NULL; + + // Create table definition metadata + psMetadata *row=NULL, *md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL from initializing database"); + return 1; + } + + // Create table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false from creating table"); + psDBCleanup(dbh); + return 2; + } + + // Insert known data rows into table + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Dump row with valid parameters + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + if(ary->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Rows dumped %d not as expected %d", + ary->n, 3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + // psFree(row); + row = (psMetadata*)psArrayGet(ary, 1); + if(!_check_const_row2(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + // psFree(row); + row = (psMetadata*)psArrayGet(ary, 2); + if(!_check_const_row1(row)) { + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // psFree(row); + psFree(ary); + + // Attempt to dump row with database NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + if(psDBDumpRows(NULL,table)!=NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return non-NULL for NULL database specified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to dump row with table NULL + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL table"); + if(psDBDumpRows(dbh,NULL)!=NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return non-NULL for NULL table specified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #851, TPDBDumpCols shall dump all cols from a test table ... +psS32 TPDBDumpCols( void ) +{ + psDB* dbh = NULL; + const char* table = "table9"; + psMetadata* row = NULL; + psMetadata* meta = NULL; + psMetadata* md = NULL; + psMetadataIterator* mdIter = NULL; + psMetadataItem* mdItem = NULL; + int itemNum = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return to initialize database"); + return 1; + } + + // Create database table for testing + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of false to create test table"); + psDBCleanup(dbh); + return 2; + } + + // Add row with known data values + row = _get_const_row1(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_const_row2(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + row = _get_row(); + psDBInsertOneRow(dbh, table, row); + psFree(row); + + // Dump columns with valid arguments + meta = psDBDumpCols(dbh, table); + mdIter = psMetadataIteratorAlloc(meta,PS_LIST_HEAD,NULL); + + // Verify contents of metadata returned + if (meta == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return value NULL for dumpCols with valid args"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + if(meta->list->n != 6) { + psError(PS_ERR_UNKNOWN,true,"Number of cols = %d not as expected %d", + meta->list->n,6); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify the metadata items + itemNum = 0; + while ((mdItem = psMetadataGetAndIncrement(mdIter)) != NULL) { + switch(itemNum) { + case 0: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_5_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_5_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 1: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_BOOL) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_BOOL); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_4_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_4_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 2: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_F64); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_3_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_3_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 3: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_F32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_2_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_2_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 4: + if(mdItem->type != PS_DATA_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_VECTOR); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->type.type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector type %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->type.type, PS_TYPE_S32); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6*(itemNum+1); + } + if(((psVector*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psVector*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_1_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_1_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + case 5: + if(mdItem->type != PS_DATA_ARRAY) { + psError(PS_ERR_UNKNOWN,true,"Column #%d type %d not as expected %d", + itemNum,mdItem->type,PS_DATA_ARRAY); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5*(itemNum+1); + } + if(((psArray*)mdItem->data.V)->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Column #%d vector size %d not as expected %d", + itemNum,((psArray*)mdItem->data.V)->n,3); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7*(itemNum+1); + } + if(strcmp(mdItem->name,TAB_COL_0_NAME) != 0) { + psError(PS_ERR_UNKNOWN,true,"Column #%d name %s not as expected %s", + itemNum,mdItem->name,TAB_COL_0_NAME); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8*(itemNum+1); + } + break; + + default: + break; + } + itemNum++; + } + psFree(mdIter); + psFree(meta); + + // Attempt to dump columns from NULL database object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + if(psDBDumpCols(NULL,table) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL when dumping columns from NULL database"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + + // Attempt to dump columns for NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + if(psDBDumpCols(dbh,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL when dumping columns from NULL table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + + + psDBDropTable(dbh, table); + + psFree(md); + + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #852, TPDBUpdateRows shall update rows in a test table ... +psS32 TPDBUpdateRows( void ) +{ + psDB* dbh = NULL; + const char* table = "table10"; + psArray* ary = NULL; + psArray* rowSet = NULL; + psMetadata* row = NULL; + psMetadata* where = NULL; + psMetadata* updates = NULL; + psMetadata* md = NULL; + int chgRows = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL when initializing database"); + return 1; + } + + // Create test table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false to create test table"); + psDBCleanup(dbh); + return 2; + } + + // Create array to hold rows to be added to test table + rowSet = psArrayAlloc(3); + rowSet->n = 0; + + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + + // Insert rows into test table + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Create where metadata to specify update - only one row + where = _get_where(); + + // Create update metadata to specify values + updates = _get_update_values(STR_2, S32_2, F32_2, F64_2, B_2); + + // Perform database update with valid parameters + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != 1) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return other than 1 for valid arguments"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify row contents after update + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row_update(row)) { + psError(PS_ERR_UNKNOWN,true,"Update row not verified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + // psFree(row); + psFree(ary); + + // Attempt to update rows with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL database"); + chgRows = psDBUpdateRows(NULL,table,where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + + // Attempt to update rows with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid table"); + chgRows = psDBUpdateRows(dbh,"table999",where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to update rows with NULL updates + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL updates"); + chgRows = psDBUpdateRows(dbh,table,where,NULL); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + + // Attempt to update rows with invalid where specifying non-existent column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid where"); + psFree(where); + where = _get_invalid_where(); + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != -1) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,-1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + + // Attempt to update rows with bad value in where statement + psFree(where); + where = _get_where_bad_value(); + chgRows = psDBUpdateRows(dbh,table,where,updates); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Updated rows %ld not as expected %ld", + chgRows,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + // Verify row contents after update - no change + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return from dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + row = (psMetadata*)psArrayGet(ary, 0); + if(!_check_row_update(row)) { + psError(PS_ERR_UNKNOWN,true,"Update row not verified"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + // psFree(row); + psFree(ary); + + psFree(updates); + psFree(where); + psFree(rowSet); + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// Testpoint #853, TPDBDeleteRows shall update rows in a test table ... +psS32 TPDBDeleteRows( void ) +{ + psDB* dbh = NULL; + const char* table = "table11"; + psArray* ary = NULL; + psArray* rowSet = NULL; + psMetadata* where = NULL; + psMetadata* row = NULL; + psMetadata* md = NULL; + int chgRows = 0; + + // Create database table definition + md = _get_CreateTableMetadata(); + + // Initialize database connection + dbh = _init_psDB(); + if (dbh == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for initialize database"); + return 1; + } + + // Create test table + if(!psDBCreateTable(dbh, table, md)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for creating test table"); + psDBCleanup(dbh); + return 2; + } + + // Create known data rows to put into test table + rowSet = psArrayAlloc(3); + rowSet->n = 0; + row = _get_const_row1(); + psArrayAdd(rowSet, 0, row); + psFree(row); + row = _get_const_row2(); + psArrayAdd(rowSet, 0, row); + psFree(row); + row = _get_row(); + psArrayAdd(rowSet, 0, row); + psFree(row); + if(!psDBInsertRows(dbh, table, rowSet)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return false for inserting data into table"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 3; + } + + // Create where clause to specify the row to remove + where = _get_where(); + + // Delete row with valid arguments + chgRows = psDBDeleteRows(dbh,table,where,10); + if(chgRows != 1) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows,1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 4; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 5; + } + if (ary->n != 2) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 6; + } + psFree(ary); + + // Attempt to delete row just deleted again + chgRows = psDBDeleteRows(dbh,table,where,10); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 7; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return NULL for dump rows"); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 8; + } + if (ary->n != 2) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 9; + } + psFree(ary); + + // Attempt to delete row with NULL database + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL database"); + chgRows = psDBDeleteRows(NULL,table,where,10); + if(chgRows > 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, -1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 10; + } + + // Attempt to delete row with invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + chgRows = psDBDeleteRows(dbh,"table999",where,10); + if(chgRows > 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, -1); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 11; + } + + // Attempt to delete row with NULL where - deletes all rows + chgRows = psDBDeleteRows(dbh,table,NULL,10); + if(chgRows != 2) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %ld", + chgRows, 2); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 12; + } + // Verify table contents + ary = psDBDumpRows(dbh, table); + if (ary != NULL && ary->n != 0) { + psError(PS_ERR_UNKNOWN,true,"Remaining rows %d not as expected %d", + ary->n,0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 14; + } + psFree(ary); + + // Attempt to delete row with NULL where - deletes all rows from an empty table + chgRows = psDBDeleteRows(dbh,table,NULL,10); + if(chgRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Deleted rows %ld not as expected %d", + chgRows, 0); + psDBDropTable(dbh,table); + psDBCleanup(dbh); + return 15; + } + + psFree(where); + psFree(rowSet); + psDBDropTable(dbh, table); + + psFree(md); + psDBCleanup(dbh); + + return 0; +} + +// +// Tests for psDBCreate and psDBDrop can only be executed if the user +// has system admin privileges for the SQL server so the tests have been +// commented out. +// +// Testpoint #XXX, psDBCreate shall create a new test database. +//psS32 TPDBCreate( void ) +//{ +// const char *test_db = "ps_test_db"; +// psS32 failed = 0; +// psDB *dbh = NULL; +// +// dbh = _init_psDB(); +// if (dbh == NULL) { +// return 1; +// } +// +// psLogMsg( __func__, PS_LOG_INFO, "psDBCreate shall create new new test database.\n" ); +// +// failed = ! psDBCreate(dbh, test_db); +// if (!failed) { +// psDBDrop(dbh, test_db); +// } +// +// psDBCleanup(dbh); +// +// return failed; +//} + +// Testpoint #XXX, psDBDrop shall create a new test database. +//psS32 TPDBDrop( void ) +//{ +// const char *test_db = "ps_test_db"; +// psS32 failed = 0; +// psDB *dbh = NULL; +// +// dbh = _init_psDB(); +// if (dbh == NULL) { +// return 1; +// } +// +// psLogMsg( __func__, PS_LOG_INFO, "psDBDrop shall create/drop a new new test database.\n" ); +// +// failed = psDBCreate(dbh, test_db); +// if (!failed) { +// failed = ! psDBDrop(dbh, test_db); +// } +// +// psDBCleanup(dbh); +// +// return failed; +//} + Index: /branches/rel-1-1/psLib/test/fft/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/fft/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +temp +.deps +.libs +Makefile +Makefile.in +tst_psImageFFT +tst_psVectorFFT +*.bb +*.bbg +*.da +gmon.out +tap_psImageFFT2 +tap_psVectorFFT2 Index: /branches/rel-1-1/psLib/test/fft/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/fft/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/Makefile.am (revision 12167) @@ -0,0 +1,26 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psImageFFT \ + tap_psVectorFFT + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/fft/tap_psImageFFT.c =================================================================== --- /branches/rel-1-1/psLib/test/fft/tap_psImageFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/tap_psImageFFT.c (revision 12167) @@ -0,0 +1,129 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define TOL 2.0e-5 // Tolerance for comparison + + +// Generate image with single high pixel +static psImage *generateImage(int numCols, int numRows) +{ + psImage *image = psImageAlloc(numCols, numRows, PS_TYPE_F32); + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + image->data.F32[y][x] = 1.2 * cos(2.0 * M_PI * x / numCols + M_PI / 4.0) + + 3.4 * sin(2.0 * M_PI * y / numRows + M_PI); + } + } + return image; +} + +// FFT forward, then back --- do I get what I started with? +// A total of 6 tests here. +static void testFFT(int numCols, int numRows) +{ + psMemId id = psMemGetId(); + + psImage *old = generateImage(numCols, numRows); + psImage *fftReal = NULL, *fftImag = NULL; + bool result = psImageForwardFFT(&fftReal, &fftImag, old); + ok(result, "forward fft result"); + skip_start(!result || !fftReal || !fftImag, 3, "forward fft failed"); + ok(fftReal->type.type == PS_TYPE_F32 && fftImag->type.type == PS_TYPE_F32, "forward fft types"); + psImage *new = NULL; + result = psImageBackwardFFT(&new, fftReal, fftImag, old->numCols); + ok(result, "backward fft result"); + skip_start(!result || !new, 2, "backward fft failed"); + ok(new->type.type == PS_TYPE_F32, "backward fft type"); + float maxDev = 0.0; // Maximum deviation from expected + for (int y = 0; y < old->numRows; y++) { + for (int x = 0; x < old->numCols; x++) { + float dev = fabs(new->data.F32[y][x] / numCols / numRows - old->data.F32[y][x]); + if (dev > maxDev) { + maxDev = dev; + } + } + } + ok(maxDev < TOL, "maximum deviation: %f", maxDev); + psFree(new); + skip_end(); + skip_end(); + + psFree(fftReal); + psFree(fftImag); + psFree(old); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + + return; +} + + +int main(int argc, char *argv[]) +{ + plan_tests(8 + 6 * 5); + + // Test with NULL real arg + { + psMemId id = psMemGetId(); + psImage *real = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *imag = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *in = psImageAlloc(512, 512, PS_TYPE_F32); + bool rc = psImageForwardFFT(NULL, &imag, in); + ok(rc == false, "psImageForwardFFT() returned FALSE with a NULL real image input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with NULL imag arg + { + psMemId id = psMemGetId(); + psImage *real = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *imag = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *in = psImageAlloc(512, 512, PS_TYPE_F32); + bool rc = psImageForwardFFT(&real, NULL, in); + ok(rc == false, "psImageForwardFFT() returned FALSE with a NULL imaginary image input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with NULL input arg + { + psMemId id = psMemGetId(); + psImage *real = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *imag = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *in = psImageAlloc(512, 512, PS_TYPE_F32); + bool rc = psImageForwardFFT(&real, &imag, NULL); + ok(rc == false, "psImageForwardFFT() returned FALSE with a NULL real image input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with incorrect input image type + { + psMemId id = psMemGetId(); + psImage *real = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *imag = psImageAlloc(512, 512, PS_TYPE_F32); + psImage *in = psImageAlloc(512, 512, PS_TYPE_F64); + bool rc = psImageForwardFFT(NULL, &imag, in); + ok(rc == false, "psImageForwardFFT() returned FALSE with incorrect input image type"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + testFFT(10, 10); // Real quick test + testFFT(10, 20); // Testing differing numCols, numRows + testFFT(20, 10); // Testing differing numCols, numRows + testFFT(611, 610); // Test something like an OTA cell + testFFT(2048, 4096); // Test something like a megacam chip +} Index: /branches/rel-1-1/psLib/test/fft/tap_psVectorFFT.c =================================================================== --- /branches/rel-1-1/psLib/test/fft/tap_psVectorFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/tap_psVectorFFT.c (revision 12167) @@ -0,0 +1,123 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define TOL 2.5e-5 // Tolerance for comparison + + +// Generate image with single high pixel +static psVector *generateVector(long num) +{ + psVector *vector = psVectorAlloc(num, PS_TYPE_F32); + for (long i = 0; i < num; i++) { + vector->data.F32[i] = 1.2 * cos(2.0 * M_PI * i / num + M_PI / 4.0) + + 3.4 * sin(0.5 * 2.0 * M_PI * i / num + M_PI); + } + return vector; +} + +// FFT forward, then back --- do I get what I started with? +// A total of 6 tests here. +static void testFFT(long num) +{ + psMemId id = psMemGetId(); + + psVector *old = generateVector(num); + psVector *fftReal = NULL, *fftImag = NULL; + bool result = psVectorForwardFFT(&fftReal, &fftImag, old); + ok(result, "forward fft result"); + skip_start(!result || !fftReal || !fftImag, 3, "forward fft failed"); + ok(fftReal->type.type == PS_TYPE_F32 && fftImag->type.type == PS_TYPE_F32, "forward fft types"); + psVector *new = NULL; + result = psVectorBackwardFFT(&new, fftReal, fftImag, old->n); + ok(result, "backward fft result"); + skip_start(!result || !new, 2, "backward fft failed"); + ok(new->type.type == PS_TYPE_F32, "backward fft type"); + float maxDev = 0.0; // Maximum deviation from expected + for (long i = 0; i < old->n; i++) { + float dev = fabs(new->data.F32[i] / num - old->data.F32[i]); + if (dev > maxDev) { + maxDev = dev; + } + } + ok(maxDev < TOL, "maximum deviation: %f", maxDev); + psFree(new); + skip_end(); + skip_end(); + + psFree(fftReal); + psFree(fftImag); + psFree(old); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + + return; +} + + +int main(int argc, char *argv[]) +{ + plan_tests(8 + 6 * 3); + + // Test with NULL real arg + { + psMemId id = psMemGetId(); + psVector *real = psVectorAlloc(512, PS_TYPE_F32);; + psVector *imag = psVectorAlloc(512, PS_TYPE_F32); + psVector *in = psVectorAlloc(512, PS_TYPE_F32); + bool rc = psVectorForwardFFT(NULL, &imag, in); + ok(rc == false, "psVectorForwardFFT() returned FALSE with a null real vector input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with NULL imag arg + { + psMemId id = psMemGetId(); + psVector *real = psVectorAlloc(512, PS_TYPE_F32);; + psVector *imag = psVectorAlloc(512, PS_TYPE_F32); + psVector *in = psVectorAlloc(512, PS_TYPE_F32); + bool rc = psVectorForwardFFT(&real, NULL, in); + ok(rc == false, "psVectorForwardFFT() returned FALSE with a null imag vector input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with NULL input arg + { + psMemId id = psMemGetId(); + psVector *real = psVectorAlloc(512, PS_TYPE_F32);; + psVector *imag = psVectorAlloc(512, PS_TYPE_F32); + psVector *in = psVectorAlloc(512, PS_TYPE_F32); + bool rc = psVectorForwardFFT(&real, &imag, NULL); + ok(rc == false, "psVectorForwardFFT() returned FALSE with a null input vector input"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + // Test with incorrect type for input arg + { + psMemId id = psMemGetId(); + psVector *real = psVectorAlloc(512, PS_TYPE_F32);; + psVector *imag = psVectorAlloc(512, PS_TYPE_F32); + psVector *in = psVectorAlloc(512, PS_TYPE_F64); + bool rc = psVectorForwardFFT(&real, &imag, in); + ok(rc == false, "psVectorForwardFFT() returned FALSE with a incorrect input vector type"); + psFree(real); + psFree(imag); + psFree(in); + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + testFFT(128); // Real quick test + testFFT(2048); // Test something big + testFFT(123456); // Test something really big +} Index: /branches/rel-1-1/psLib/test/fft/tst_psImageFFT.c =================================================================== --- /branches/rel-1-1/psLib/test/fft/tst_psImageFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/tst_psImageFFT.c (revision 12167) @@ -0,0 +1,664 @@ +/** @file tst_psImageFFT.c + * + * @brief Contains the tests for psFFT.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:46:59 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" + +#define GENIMAGE(img,c,r,TYP, valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for (psU32 row=0;rowdata.TYP[row]; \ + for (psU32 col=0;coltype.type != PS_TYPE_C32) { + psError(PS_ERR_UNKNOWN, true,"FFT didn't produce complex values?"); + return 1; + } + if (img2->numCols != m || img2->numRows != n) { + psError(PS_ERR_UNKNOWN, true,"FFT didn't produce proper size result (%dx%d vs. expected %dx%d).", + img2->numCols,img2->numRows,m,n); + return 2; + } + + // 3. verify that the only significant component cooresponds to the freqency of the input in step 1. + for (psU32 row=0;rowdata.C32[row]; + for (psU32 col=0;col 0.1f) { + // must be (0,1) or (0,n-1) or (1,0) or (m-1,0) + if (! (col == 0 && (row == 1 || row == n-1)) + && ! (row == 0 && (col==1 || col == m-1)) ) { + psError(PS_ERR_UNKNOWN, true,"Result invalid at %d,%d (%.2f)",col,row,mag); + return 3; + } + } else + if ( (col == 0 && (row == 1 || row == n-1)) + || (row == 0 && (col==1 || col == m-1)) ) { + psError(PS_ERR_UNKNOWN, true,"Result invalid at %d,%d (%.2f)",col,row,mag); + return 4; + } + } + } + + + // 4. perform a reverse transform + img3 = psImageFFT(img3,img2,PS_FFT_REVERSE); + + if (img3->type.type != PS_TYPE_C32) { + psError(PS_ERR_UNKNOWN, true,"FFT didn't produce complex values?"); + return 5; + } + + if (img3->numCols != m || img3->numRows != n) { + psError(PS_ERR_UNKNOWN, true,"FFT didn't produce proper size result (%dx%d vs. expected %dx%d).", + img3->numCols,img3->numRows,m,n); + return 6; + } + + for (psU32 row=0;rowdata.C32[row]; + psF32* imgRow = img->data.F32[row]; + for (psU32 col=0;col 0.1) { + psError(PS_ERR_UNKNOWN, true,"Reverse FFT didn't give original image back (%d,%d %.2f vs %.2f)", + col,row,pixel,imgRow[col]); + return 7; + } + } + } + + // 4. perform a reverse transform to real result + img3 = psImageFFT(img3,img2,PS_FFT_REVERSE|PS_FFT_REAL_RESULT); + + if (img3->type.type != PS_TYPE_F32) { + char* typeStr; + PS_TYPE_NAME(typeStr,img3->type.type) + psError(PS_ERR_UNKNOWN, true,"FFT asked to make real result, but I got a %s type image?",typeStr); + return 8; + } + + if (img3->numCols != m || img3->numRows != n) { + psError(PS_ERR_UNKNOWN, true,"FFT didn't produce proper size result (%dx%d vs. expected %dx%d).", + img3->numCols,img3->numRows,m,n); + return 9; + } + + for (psU32 row=0;rowdata.F32[row]; + psF32* imgRow = img->data.F32[row]; + for (psU32 col=0;col 0.1) { + psError(PS_ERR_UNKNOWN, true,"Reverse FFT didn't give original image back (%d,%d %.2f vs %.2f)", + col,row,pixel,imgRow[col]); + return 10; + } + } + } + + // check if error occurs if FORWARD and REVERSE are both given. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + if (psImageFFT(NULL,img2,PS_FFT_REVERSE|PS_FFT_FORWARD) != NULL) { + psError(PS_ERR_UNKNOWN, true,"PS_FFT_REVERSE|PS_FFT_FORWARD option produced something?"); + return 11; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + if (psImageFFT(NULL,img2,PS_FFT_FORWARD|PS_FFT_REAL_RESULT) != NULL) { + psError(PS_ERR_UNKNOWN, true,"PS_FFT_FORWARD|PS_FFT_REAL_RESULT option produced something?"); + return 12; + } + + /* Verify return null and program execution doesn't stop if input image is null */ + img4 = psImageFFT(NULL,NULL,PS_FFT_FORWARD); + if (img4 != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psImageFFT should return null for a null input image."); + return 10; + } + + /* Verify return null and program execution doesn't stop if input image is invalid direction */ + GENIMAGE(img4,8,8,S8,row+col); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for invalid direction."); + img5 = psImageFFT(NULL,img4,PS_FFT_REAL_RESULT); + if (img5 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageFFT should return null for an invalid FFT direction."); + return 11; + } + psFree(img4); + + psFree(img); + psFree(img2); + psFree(img3); + + return 0; +} + +psS32 testImageRealImaginary(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psImage* img3 = NULL; + psImage* c64Img = NULL; + psImage* c64Img2 = NULL; + psImage* c64Img3 = NULL; + psImage* ncImg = NULL; + psImage* ncImg2 = NULL; + psImage* ncImg3 = NULL; + + psU32 m = 128; + psU32 n = 64; + + /* + 1. create a C32 complex vector with distinctly different real and imaginary parts. + 2. call psImageReal and psImageImaginary + 3. compare results to the real/imaginary components of input + */ + + // 1. create a C32 complex vector with distinctly different real and imaginary parts. + GENIMAGE(img,m,n,C32, row + I * col); + + // 2. call psImageReal and psImageImaginary + img2 = psImageReal(img2,img); + if (img2 == NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageReal returned a NULL?"); + return 1; + } + if (img2->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN, true,"psImageReal returned a wrong type (%d)?", + img2->type.type); + return 2; + } + + img3 = psImageImaginary(img3,img); + if (img3 == NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary returned a NULL?"); + return 3; + } + if (img3->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary returned a wrong type (%d)?", + img3->type.type); + return 4; + } + + // 3. compare results to the real/imaginary components of input + for (psU32 row=0;rowdata.F32[row]; + psF32* img3Row = img3->data.F32[row]; + for (psU32 col=0;col FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageReal didn't return the real portion at n=%d", + n); + return 5; + } + if (fabsf(img3Row[col] - col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary didn't return the imag portion at n=%d", + n); + return 6; + } + } + } + + psFree(img); + psFree(img2); + psFree(img3); + + /* + 1. create a C64 complex vector with distinctly different real and imaginary parts. + 2. call psImageReal and psImageImaginary + 3. compare results to the real/imaginary components of input + */ + + // 1. create a C64 complex vector with distinctly different real and imaginary parts. + GENIMAGE(c64Img,m,n,C64, row + I * col); + + // 2. call psImageReal and psImageImaginary + c64Img2 = psImageReal(c64Img2,c64Img); + if (c64Img2 == NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageReal returned a NULL?"); + return 1; + } + if (c64Img2->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN, true,"psImageReal returned a wrong type (%d)?", + img2->type.type); + return 2; + } + + c64Img3 = psImageImaginary(c64Img3,c64Img); + if (c64Img3 == NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary returned a NULL?"); + return 3; + } + if (c64Img3->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary returned a wrong type (%d)?", + c64Img3->type.type); + return 4; + } + + // 3. compare results to the real/imaginary components of input + for (psU32 row=0;rowdata.F64[row]; + psF64* img3Row = c64Img3->data.F64[row]; + for (psU32 col=0;col FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageReal didn't return the real portion at n=%d", + n); + return 5; + } + if (fabsf(img3Row[col] - col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageImaginary didn't return the imag portion at n=%d", + n); + return 6; + } + } + } + + GENIMAGE(ncImg,m,n,F32,row+col); + ncImg2 = psImageReal(ncImg2,ncImg); + ncImg3 = psImageImaginary(ncImg3,ncImg); + if(ncImg2 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageReal returned NULL"); + return 40; + } + if(ncImg2->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psImageReal returned a wrong type"); + return 41; + } + if(ncImg3 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageImaginary returned NULL"); + return 42; + } + if(ncImg3->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psImageImaginary returned NULL"); + return 43; + } + for(psU32 row=0; rowdata.F32[row]; + psF32* ncImg3Row = ncImg3->data.F32[row]; + for(psU32 col=0; col FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImageReal didn't return the real portion"); + return 45; + } + if(fabsf(ncImg3Row[col] - 0) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImageImaginary didn't return the imaginary portion"); + return 46; + } + } + } + psFree(ncImg); + psFree(ncImg2); + psFree(ncImg3); + + psFree(c64Img); + psFree(c64Img2); + psFree(c64Img3); + + // Perform psImageReal with null input + if(psImageReal(NULL,NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImageReal did not return null with null input"); + return 10; + } + + // Perform psImageImaginary with null input + if(psImageImaginary(NULL,NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImageImaginary did not return null with null input"); + return 10; + } + + return 0; +} + +psS32 testImageComplex(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psImage* img3 = NULL; + psImage* c64Img = NULL; + psImage* c64Img2 = NULL; + psImage* c64Img3 = NULL; + psImage* pImg = NULL; + psImage* pImg2 = NULL; + psImage* pImg3 = NULL; + + psU32 m = 128; + psU32 n = 64; + + /* + 1. create two unique psF32 vectors of the same size + 2. call psImageComplex + 3. verify that the result is a psC32 + 4. use crealf and cimagf on step 2 results + 5. compare step 4 results to input. + + 6. create a psF32 and a psF64 vector of the same size + 7. call psImageComplex + 8. verify that an appropriate error occurred. + + 9. create two psf32 vectors of different sizes + 10. call psImageComplex + 11. verify thet an appropriate error occurred. + */ + + // 1. create two unique psF32 vectors of the same size + GENIMAGE(img,m,n,F32,row); + GENIMAGE(img2,m,n,F32,col); + GENIMAGE(c64Img,m,n,F64,row); + GENIMAGE(c64Img2,m,n,F64,col); + GENIMAGE(pImg,m,n,S16,row); + GENIMAGE(pImg2,m,n,S16,col); + + // 2. call psImageComplex + img3 = psImageComplex(img3,img,img2); + c64Img3 = psImageComplex(c64Img3,c64Img,c64Img2); + + // 3. verify that the result is a psC32 + if (img3->type.type != PS_TYPE_C32) { + psError(PS_ERR_UNKNOWN, true,"Image Type from psImageComplex is not complex? (%d)", + img3->type.type); + return 1; + } + if (c64Img3->type.type != PS_TYPE_C64) { + psError(PS_ERR_UNKNOWN,true,"Image type from psImageComplex is not complex"); + return 10; + } + + // 4. call psImageReal and psImageImaginary on step 2 results (not needed, just use crealf/cimagf) + // 5. compare step 4 results to input. + for (psU32 row=0;rowdata.C32[row]; + psC64* c64Img3Row = c64Img3->data.C64[row]; + for (psU32 col=0;col FLT_EPSILON || + fabsf(cimagf(img3Row[col]) - col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageComplex result is invalid (%d,%d, %.2f+%.2fi)", + col,row,crealf(img3Row[col]),cimagf(img3Row[col])); + return 2; + } + if (fabsf(crealf(c64Img3Row[col]) - row) > FLT_EPSILON || + fabsf(cimagf(c64Img3Row[col]) - col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImageComplex result is invalid"); + return 3; + } + } + } + + // 6. create a psF32 and a psF64 image of the same size + img2 = psImageRecycle(img2,m,n,PS_TYPE_F64); + + // 7. call psImageComplex + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error (type mismatch)."); + img3 = psImageComplex(img3,img,img2); + // 8. verify that an appropriate error occurred. (this partially has to be done via inspection) + if (img3 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageComplex returned a image though input types mismatched."); + return 3; + } + + // 9. create two psf32 vectors of different sizes + img2 = psImageRecycle(img2,m/2,n,PS_TYPE_F32); + + // 10. call psImageComplex + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error (size mismatch)."); + img3 = psImageComplex(img3,img,img2); + + // 11. verify thet an appropriate error occurred. + if (img3 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageComplex returned a image though input sizes mismatched."); + return 4; + } + + // Perform psImageComplex with invalid type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + pImg3 = psImageComplex(pImg3,pImg,pImg2); + if ( pImg3 != NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageComplex did not return NULL"); + return 50; + } + + psFree(img); + psFree(img2); + psFree(img3); + psFree(c64Img); + psFree(c64Img2); + psFree(c64Img3); + psFree(pImg); + psFree(pImg2); + + // Perform psImageComplex with null input + if(psImageComplex(NULL,NULL,NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImageComplex did not return null with null input"); + return 20; + } + + return 0; +} + +psS32 testImageConjugate(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psImage* c64Img = NULL; + psImage* c64Img2 = NULL; + psImage* pImg = NULL; + psImage* pImg2 = NULL; + + psU32 m = 128; + psU32 n = 64; + + /* + 1. create a psC32 with unique real and imaginary values. + 2. call psImageConjugate + 3. verify result is psC32 + 4. verify each value is conjugate of input (a+bi -> a-bi) + */ + + // 1. create a psC32 with unique real and imaginary values. + GENIMAGE(img,m,n,C32, row + I * col); + GENIMAGE(c64Img,m,n,C64,row + I*col); + GENIMAGE(pImg,m,n,F32,row+col); + + // 2. call psImageConjugate + img2 = psImageConjugate(img2,img); + c64Img2 = psImageConjugate(c64Img2,c64Img); + pImg2 = psImageConjugate(pImg2,pImg); + + // 3. verify result is psC32 + if (img2->type.type != PS_TYPE_C32) { + psError(PS_ERR_UNKNOWN, true,"the psImageConjugate didn't return a C32 image."); + return 1; + } + if (c64Img2->type.type != PS_TYPE_C64) { + psError(PS_ERR_UNKNOWN,true,"psImageConjugate did not return a C64 image"); + return 10; + } + if (pImg2->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psImageConjugate did not return a F32 image"); + return 11; + } + + // 4. verify each value is conjugate of input (a+bi -> a-bi) + for (psU32 row=0;rowdata.C32[row]; + psC64* c64Img2Row = c64Img2->data.C64[row]; + psF32* pImg2Row = pImg2->data.F32[row]; + for (psU32 col=0;col FLT_EPSILON || + fabsf(cimagf(img2Row[col]) + col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImageComplex result is invalid (%d,%d, %.2f+%.2fi)", + col,row,crealf(img2Row[col]),cimagf(img2Row[col])); + return 2; + } + if (fabsf(crealf(c64Img2Row[col]) - row) > FLT_EPSILON || + fabsf(cimagf(c64Img2Row[col]) + col) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImageComplex result is invalid"); + return 20; + } + if (fabsf(pImg2Row[col] - (row+col)) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImageComplex result is invalid"); + return 21; + } + } + } + + psFree(img); + psFree(img2); + psFree(c64Img); + psFree(c64Img2); + psFree(pImg); + psFree(pImg2); + + // Perform psImageConjugate with null input + if(psImageConjugate(NULL,NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImageConjugate did not return null with null input"); + return 30; + } + + return 0; +} + +psS32 testImagePowerSpectrum(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psImage* c64Img = NULL; + psImage* c64Img2 = NULL; + psImage* pImg = NULL; + + psU32 m = 128; + psU32 n = 64; + + /* + 1. create a psC32 vector with unique real and imaginary components + 2. call psImagePowerSpectrum + 3. verify result is psF32 + 4. verify the values are the square of the absolute values of the original + */ + + // 1. create a psC32 vector with unique real and imaginary components + GENIMAGE(img,m,n,C32, row + I * col); + GENIMAGE(c64Img,m,n,C64,row+I*col); + GENIMAGE(pImg,m,n,F32,row+col); + + // 2. call psImagePowerSpectrum + img2 = psImagePowerSpectrum(img2,img); + c64Img2 = psImagePowerSpectrum(c64Img2, c64Img); + + // 3. verify result is psF32 + if (img2->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN, true,"the type was not PS_TYPE_F32."); + return 1; + } + if (c64Img2->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"psImagePowerSpectrum did not return PS_TYPE_F64"); + return 10; + } + + // 4. verify the values are the square of the absolute values of the original + for (psU32 row=0;rowdata.C32[row]; + psF32* img2Row = img2->data.F32[row]; + psC64* c64ImgRow = c64Img->data.C64[row]; + psF64* c64Img2Row = c64Img2->data.F64[row]; + for (psU32 col=0;col 2.0f*FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psImagePowerSpectrum result is invalid (%d,%d, %.2f vs %.2f)", + col,row,img2Row[col],power); + return 2; + } + if (fabsf(c64Img2Row[col] - power64) > 2.0f*FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psImagePowerSpectrum result is invalid"); + return 22; + } + } + } + + psFree(img); + psFree(img2); + psFree(c64Img); + psFree(c64Img2); + + // Perform psImagePowerSpectrum with invalid input + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message."); + if(psImagePowerSpectrum(NULL,pImg) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImagePowerSpectrum did not return null with invalid type"); + return 41; + } + psFree(pImg); + + // Perform psImagePowerSpectrum with null input + if(psImagePowerSpectrum(NULL,NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psImagePowerSpectrum did not return null with null input"); + return 40; + } + + return 0; +} Index: /branches/rel-1-1/psLib/test/fft/tst_psVectorFFT.c =================================================================== --- /branches/rel-1-1/psLib/test/fft/tst_psVectorFFT.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fft/tst_psVectorFFT.c (revision 12167) @@ -0,0 +1,642 @@ +/** @file tst_psVectorFFT.c +* +* @brief Contains the tests for psFFT.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-07-13 02:46:59 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" + +#define GENIMAGE(img,c,r,TYP, valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for (psU32 row=0;rowdata.TYP[row]; \ + for (psU32 col=0;coln = vec->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.F32[ n ] = sinf( ( psF32 ) n / 50.0f * M_PI ); + } + + // 2. perform a forward transform + vec2 = psVectorFFT( NULL, vec, PS_FFT_FORWARD ); + if ( vec2->type.type != PS_TYPE_C32 ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't produce complex values?" ); + return 1; + } + + // 2a. verify output vector is same size as input + if ( vec2->n != vec->n ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't return vector with same size as input"); + return 10; + } + + + // 3. verify that the only significant component cooresponds to the freqency of the input in step 1. + for ( psU32 n = 0; n < 100; n++ ) { + if ( n == 1 || n == 99 ) { + if ( fabsf( cabsf( vec2->data.C32[ n ] ) - 50.0f ) > 0.1f ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't work for vector (n=%d)", n ); + return 2; + } + } else { + if ( fabsf( cabsf( vec2->data.C32[ n ] ) ) > 0.1f ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't work for vector (n=%d)", n ); + return 3; + } + } + } + + // 4. perform a reverse transform + vec3 = psVectorFFT( NULL, vec2, PS_FFT_REVERSE ); + if ( vec3->type.type != PS_TYPE_C32 ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't produce complex values?" ); + return 4; + } + if ( vec3->n != vec2->n ) { + psError(PS_ERR_UNKNOWN,true, "FFT didn't return vector with same size as input"); + return 40; + } + for ( psU32 n = 0; n < 100; n++ ) { + psF32 val = sinf( ( psF32 ) n / 50.0f * M_PI ); + psF32 vecVal = crealf( vec3->data.C32[ n ] ) / 100; + if ( fabsf( vecVal - val ) > 0.1f ) { + psError(PS_ERR_UNKNOWN,true, "Reverse FFT didn't give me the original vector back (n=%d) (%.2f vs %.2f)", + n, vecVal, val ); + return 5; + } + } + + // Perform a reverse transform with real flag set + vec4 = psVectorFFT(NULL,vec2, (PS_FFT_REVERSE | PS_FFT_REAL_RESULT)); + if(vec4->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"FFT with real result did not produce real values"); + return 80; + } + + // Perform vector FFT with invalid direction flags + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + if ( psVectorFFT(NULL,vec2,(psFFTFlags)0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with invalid direction"); + return 70; + } + + psFree( vec ); + psFree( vec2 ); + psFree( vec3 ); + psFree( vec4 ); + + // Perform vector FFT with null input + if ( psVectorFFT(NULL,NULL,PS_FFT_FORWARD) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 64; + } + + return 0; +} + +psS32 testVectorRealImaginary( void ) +{ + psVector * vec = NULL; + psVector* vec2 = NULL; + psVector* vec3 = NULL; + psVector* vec4 = NULL; + psVector* vec5 = NULL; + psVector* vec6 = NULL; + psVector* vec7 = NULL; + psVector* vec8 = NULL; + psVector* vec9 = NULL; + psVector* vec10 = NULL; + psVector* vec11 = NULL; + + /* + 1. create a C32 complex vector with distinctly different real and imaginary parts. + 2. call psVectorReal and psVectorImaginary + 3. compare results to the real/imaginary components of input + */ + + // 1. create a C32 complex vector with distinctly different real and imaginary parts. + vec = psVectorAlloc( 100, PS_TYPE_C32 ); + vec8 = psVectorAlloc( 100, PS_TYPE_C64 ); + vec10 = psVectorAlloc( 100, PS_TYPE_C64 ); + vec->n = vec->nalloc; + vec8->n = vec8->nalloc; + vec10->n = vec10->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.C32[ n ] = n + I * ( n * 2 ); + vec8->data.C64[n] = n + I * ( n * 2 ); + vec10->data.C64[n] = n + I * ( n * 2 ); + } + vec4 = psVectorAlloc( 100, PS_TYPE_F32); + vec4->n = vec4->nalloc; + vec6 = psVectorAlloc( 100, PS_TYPE_F32); + vec6->n = vec6->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec4->data.F32[n] = n; + vec6->data.F32[n] = n; + } + + // 2. call psVectorReal and psVectorImaginary + vec2 = psVectorReal( vec2, vec ); + if ( vec2 == NULL ) { + psError(PS_ERR_UNKNOWN,true, "psVectorReal returned a NULL?" ); + return 1; + } + if ( vec2->type.type != PS_TYPE_F32 ) { + psError(PS_ERR_UNKNOWN,true, "psVectorReal returned a wrong type (%d)?", + vec2->type.type ); + return 2; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning."); + vec5 = psVectorReal(vec5, vec4); + if (vec5 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal returned NULL"); + return 10; + } + if ( vec5->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal returned the wrong type"); + return 11; + } + + vec9 = psVectorReal(vec9,vec8); + if(vec9 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal returned NULL"); + return 20; + } + if(vec9->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal returned the wrong type"); + return 21; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning."); + vec3 = psVectorImaginary( vec3, vec ); + if ( vec3 == NULL ) { + psError(PS_ERR_UNKNOWN,true, "psVectorImaginary returned a NULL?" ); + return 3; + } + if ( vec3->type.type != PS_TYPE_F32 ) { + psError(PS_ERR_UNKNOWN,true, "psVectorImaginary returned a wrong type (%d)?", + vec3->type.type ); + return 4; + } + + vec7 = psVectorImaginary(vec7, vec6); + if(vec7 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psVectorImage returned NULL"); + return 12; + } + if(vec7->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psVectorImaginary returned the wrong type"); + return 13; + } + + vec11 = psVectorImaginary(vec11, vec10); + if(vec11 == NULL) { + psError(PS_ERR_UNKNOWN,true,"psVectorImaginary returned NULL"); + return 14; + } + if(vec11->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"psVectorImaginary returned the wrong type"); + return 15; + } + + // 3. compare results to the real/imaginary components of input + for ( psU32 n = 0; n < 100; n++ ) { + psF32 r = n; + psF32 i = ( n * 2 ); + psF64 rr = n; + psF64 ii = ( n * 2 ); + if ( fabsf( vec2->data.F32[ n ] - r ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorReal didn't return the real portion at n=%d", + n ); + return 5; + } + if ( fabsf( vec3->data.F32[ n ] - i ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorImaginary didn't return the real portion at n=%d", + n ); + return 6; + } + if ( fabsf( vec5->data.F32[n] - r) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal didn't return the real portion at n=%d",n); + return 50; + } + if ( fabsf( vec7->data.F32[n] - 0) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psVectorImaginary did not return the imaginary portion at n=%d",n); + return 51; + } + if ( fabsf(vec9->data.F64[n] - rr) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"psVectorReal did not return the real portion at n=%d",n); + return 52; + } + if ( fabsf(vec11->data.F64[n] - ii) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psVectorImaginary did not return the imaginary portion at n=%d",n); + return 53; + } + } + + psFree( vec ); + psFree( vec2 ); + psFree( vec3 ); + psFree( vec4 ); + psFree( vec5 ); + psFree( vec6 ); + psFree( vec7 ); + psFree( vec8 ); + psFree( vec9 ); + psFree( vec10 ); + psFree( vec11 ); + + // Perform vector Real with null input + if ( psVectorReal(NULL,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 63; + } + // Perform vector Imaginary with null input + if ( psVectorImaginary(NULL,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 73; + } + + return 0; +} + +psS32 testVectorComplex( void ) +{ + psVector * vec = NULL; + psVector* vec2 = NULL; + psVector* vec3 = NULL; + psVector* vec4 = NULL; + psVector* vec5 = NULL; + psVector* vec6 = NULL; + + /* + 1. create two unique psF32 vectors of the same size + 2. call psVectorComplex + 3. verify that the result is a psC32 + 4. call psVectorReal and psVectorImaginary on step 2 results + 5. compare step 4 results to input. + + 6. create a psF32 and a psF64 vector of the same size + 7. call psVectorComplex + 8. verify that an appropriate error occurred. + + 9. create two psf32 vectors of different sizes + 10. call psVectorComplex + 11. verify thet an appropriate error occurred. + */ + + // 1. create two unique psF32 vectors of the same size + vec = psVectorAlloc( 100, PS_TYPE_F32 ); + vec2 = psVectorAlloc( 100, PS_TYPE_F32 ); + vec4 = psVectorAlloc( 100, PS_TYPE_F64 ); + vec5 = psVectorAlloc( 100, PS_TYPE_F64 ); + vec->n = vec->nalloc; + vec2->n = vec2->nalloc; + vec4->n = vec4->nalloc; + vec5->n = vec5->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.F32[ n ] = n; + vec2->data.F32[ n ] = ( n * 2 ); + vec4->data.F64[ n ] = n; + vec5->data.F64[ n ] = ( n * 2 ); + } + + // 2. call psVectorComplex + vec3 = psVectorComplex( vec3, vec, vec2 ); + + // 3. verify that the result is a psC32 + if ( vec3->type.type != PS_TYPE_C32 ) { + psError(PS_ERR_UNKNOWN,true, "Vector Type from psVectorComplex is not complex? (%d)", + vec3->type.type ); + return 1; + } + + // 4. call psVectorReal and psVectorImaginary on step 2 results (not needed, just use crealf/cimagf) + // 5. compare step 4 results to input. + for ( psU32 n = 0; n < 100; n++ ) { + if ( fabsf( crealf( vec3->data.C32[ n ] ) - n ) > FLT_EPSILON || + fabsf( cimagf( vec3->data.C32[ n ] ) - ( n * 2 ) ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorComplex result is invalid (n=%d, %.2f+%.2fi)", + n, crealf( vec3->data.C32[ n ] ), cimagf( vec3->data.C32[ n ] ) ); + return 2; + }; + } + + + // 6. create a psF32 and a psF64 vector of the same size + vec2 = psVectorRecycle( vec2, 100, PS_TYPE_F64 ); + + // 7. call psVectorComplex + psLogMsg(__func__, PS_LOG_INFO, "Following should be an error (type mismatch)." ); + vec3 = psVectorComplex( vec3, vec, vec2 ); + // 8. verify that an appropriate error occurred. (this partially has to be done via inspection) + if ( vec3 != NULL ) { + psError(PS_ERR_UNKNOWN,true, "psVectorComplex returned a vector though input types mismatched." ); + return 3; + } + + // 9. create two psf32 vectors of different sizes + vec2 = psVectorRecycle( vec2, 200, PS_TYPE_F32 ); + + // 10. call psVectorComplex + vec3 = psVectorComplex( vec3, vec, vec2 ); + + // 11. verify thet an appropriate error occurred. (actually, it isn't an error...) + if ( vec3->n != 100 ) { + psError(PS_ERR_UNKNOWN,true, "psVectorComplex returned a larger vector than the input supported (%d).", vec3->n ); + return 4; + } + + // Verify the function works with psF64 type + vec6 = psVectorComplex(vec6, vec4, vec5); + if( vec6->type.type != PS_TYPE_C64 ) { + psError(PS_ERR_UNKNOWN,true,"Vector return type is not complex"); + return 40; + } + + // Verify error message generated with input of invalid type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + vec4->type.type = PS_TYPE_S8; + vec5->type.type = PS_TYPE_S8; + vec6 = psVectorComplex(vec6, vec4, vec5); + if(vec6 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid type"); + return 50; + } + vec4->type.type = PS_TYPE_F64; + vec5->type.type = PS_TYPE_F64; + + psFree( vec ); + psFree( vec2 ); + psFree( vec3 ); + psFree( vec4 ); + psFree( vec5 ); + + // Perform vector complex with null input + if ( psVectorComplex(NULL,NULL,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 62; + } + + return 0; +} + +psS32 testVectorConjugate( void ) +{ + psVector * vec = NULL; + psVector* vec2 = NULL; + + /* + 1. create a psC32 with unique real and imaginary values. + 2. call psVectorConjugate + 3. verify result is psC32 + 4. verify each value is conjugate of input (a+bi -> a-bi) + */ + + // 1. create a psC32 with unique real and imaginary values. + vec = psVectorAlloc( 100, PS_TYPE_C32 ); + vec->n = vec->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.C32[ n ] = n + I * ( n * 2 ); + } + + // 2. call psVectorConjugate + vec2 = psVectorConjugate( vec2, vec ); + + // 3. verify result is psC32 + if ( vec2->type.type != PS_TYPE_C32 ) { + psError(PS_ERR_UNKNOWN,true, "the psVectorConjugate didn't return a C32 vector" ); + return 1; + } + + // 4. verify each value is conjugate of input (a+bi -> a-bi) + for ( psU32 n = 0; n < 100; n++ ) { + if ( fabsf( crealf( vec->data.C32[ n ] ) - crealf( vec2->data.C32[ n ] ) ) > FLT_EPSILON || + fabsf( cimagf( vec->data.C32[ n ] ) + cimagf( vec2->data.C32[ n ] ) ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorConjugate result is invalid (n=%d, %.2f+%.2fi)", + n, crealf( vec2->data.C32[ n ] ), cimagf( vec2->data.C32[ n ] ) ); + return 2; + }; + } + + psFree( vec ); + + // Perform conjugate for non-complex number + vec = psVectorAlloc( 100, PS_TYPE_F32 ); + vec->n = vec->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.F32[ n ] = n; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate a warning message."); + vec2 = psVectorConjugate(vec2,vec); + if(vec2->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN,true,"psVectorConjugate did not return a F32 vector"); + return 10; + } + for ( psU32 n = 0; n < 100; n++ ) { + if( vec->data.F32[n] != vec2->data.F32[n] ) { + psError(PS_ERR_UNKNOWN,true,"psVectorConjugate result is invalid (n=%d)",n); + return 11; + } + } + psFree(vec); + + // Perform vector conjugate with C64 type + vec = psVectorAlloc( 100, PS_TYPE_C64 ); + vec->n = vec->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.C64[n] = n + I * ( n * 2 ); + } + vec2 = psVectorConjugate(vec2,vec); + if(vec2->type.type != PS_TYPE_C64) { + psError(PS_ERR_UNKNOWN,true,"psVectorConjugate did not return a C64 vector"); + return 12; + } + for ( psU32 n = 0; n < 100; n++ ) { + if ( fabsf( crealf(vec->data.C64[n]) - crealf(vec2->data.C64[n])) > FLT_EPSILON || + fabsf( cimagf(vec->data.C64[n]) + cimagf(vec2->data.C64[n])) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"psVectorConjugate result is invalid (n=%d)",n); + return 13; + } + } + psFree(vec); + + // Perform vector conjugate with null input (vec2 should be freed too) + if ( psVectorConjugate(vec2,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 61; + } + + return 0; +} + +psS32 testVectorPowerSpectrum( void ) +{ + psVector * vec = NULL; + psVector* vec2 = NULL; + psVector* vec3 = NULL; + psVector* vec4 = NULL; + + psF32 val; + psF64 val1; + + /* + 1. create a psC32 vector with unique real and imaginary components + 2. call psVectorPowerSpectrum + 3. verify result is psF32 + 4. verify the values are the square of the absolute values of the original + */ + + // 1. create a psC32 vector with unique real and imaginary components + vec = psVectorAlloc( 100, PS_TYPE_C32 ); + vec->n = vec->nalloc; + vec3 = psVectorAlloc(100,PS_TYPE_C64); + vec3->n = vec3->nalloc; + for ( psU32 n = 0; n < 100; n++ ) { + vec->data.C32[ n ] = n + I * sinf( ( ( psF32 ) n ) / 50.f * M_PI ); + vec3->data.C64[ n ] = n + I * sinf( ( ( psF64 ) n ) / 50.f * M_PI ); + } + + // 2. call psVectorPowerSpectrum + vec2 = psVectorPowerSpectrum( vec2, vec ); + vec4 = psVectorPowerSpectrum( vec4, vec3 ); + + // 3. verify result is psF32 + if ( vec2->type.type != PS_TYPE_F32 ) { + psError(PS_ERR_UNKNOWN,true, "the type was not PS_TYPE_F32." ); + return 1; + } + if ( vec4->type.type != PS_TYPE_F64 ) { + psError(PS_ERR_UNKNOWN,true,"psPowerSpectrum did not return type PS_TYPE_F64 type = %d",vec4->type.type); + return 20; + } + + // 3a. verify result is the same size a input + // Awaiting IfA direction on bug #228 + // if ( vec2->n != vec->n ) { + // psError(PS_ERR_UNKNOWN,true, "Output vector size different(%d) than input vector(%d)",vec2->n, vec->n); + // return 10; + // } + + // 4. verify the values are the square of the absolute values of the original + // (ADD specifies something else) + // P_0 = |C_0|^2/N^2 + // P_j = (|C_j|^2+|C_N-j|^2)/N^2 + // P_N/2 = |C_N/2|^2/N^2 + // where j = 1,2,...,(N/2-1) + + val = cabsf( vec->data.C32[ 0 ] ) * cabsf( vec->data.C32[ 0 ] ) / 100 / 100; + val1= cabsf( vec3->data.C64[0] ) * cabsf(vec3->data.C64[0])/100/100; + if ( fabsf( vec2->data.F32[ 0 ] - val ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorPowerSpectrum result is invalid (n=0, %.2f %.2f)", + vec2->data.F32[ 0 ], val ); + return 2; + } + if ( fabsf( vec4->data.C64[0] - val1 ) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"psVectorPowerSpectrum result is invalid (n=0)"); + return 21; + } + + for ( psU32 n = 1; n < 50; n++ ) { + val = ( cabsf( vec->data.C32[ n ] ) * cabsf( vec->data.C32[ n ] ) + + cabsf( vec->data.C32[ 100 - n ] ) * cabsf( vec->data.C32[ 100 - n ] ) ) / 100 / 100; + val1 = (cabsf(vec3->data.C64[n]) * cabsf(vec3->data.C64[n]) + + cabsf(vec3->data.C64[100-n]) * cabsf(vec3->data.C64[100-n]))/100/100; + if ( fabsf( val - vec2->data.F32[ n ] ) > 10*FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorPowerSpectrum result is invalid (n=%d, %.2f %.2f)", + n, vec2->data.F32[ n ], val ); + return 2; + } + if (fabsf(val1 - vec4->data.F64[n]) > 10*FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"psVectorPowerSpectrum result is invalid (n=%d, %.2f %.2f)",n,vec4->data.F64[n],val1); + return 22; + } + } + + val = cabsf( vec->data.C32[ 50 ] ) * cabsf( vec->data.C32[ 50 ] ) / 100 / 100; + if ( fabsf( vec2->data.F32[ 50 ] - val ) > 10*FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true, "psVectorPowerSpectrum result is invalid (n=50, %.2f %.2f)", + vec2->data.F32[ 0 ], val ); + return 2; + }; + + psFree( vec ); + psFree( vec2 ); + psFree( vec3 ); + psFree( vec4 ); + + // Perform vector power spectrum with non-complex number + vec = psVectorAlloc(100,PS_TYPE_F32); + vec->n = vec->nalloc; + for( psU32 n=0; n<100; n++) { + vec->data.F32[n] = n; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + if(psVectorPowerSpectrum(NULL,vec) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psVectorPowerSpectrum did not return a null vector."); + return 10; + } + + // Perform vector power spectrum with null input + if ( psVectorPowerSpectrum(NULL,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with null input vector"); + return 60; + } + + psFree(vec); + + return 0; +} Index: /branches/rel-1-1/psLib/test/fits/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/fits/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/fits/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +temp +.deps +.libs +Makefile +Makefile.in +multi.fits +table.fits +tmpImages +tap_psFitsBlank_00 +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/fits/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/fits/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/fits/Makefile.am (revision 12167) @@ -0,0 +1,29 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psFits + tap_psFitsBlank_00 + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* multi.fits table.fits tmpImages/* core core.* *~ \ + *.bb *.bbg *.da gmon.out + +test: check + +tests: $(check_PROGRAMS) + $(top_srcdir)/test/test.pl Index: /branches/rel-1-1/psLib/test/fits/tap_psFits.c =================================================================== --- /branches/rel-1-1/psLib/test/fits/tap_psFits.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fits/tap_psFits.c (revision 12167) @@ -0,0 +1,1255 @@ +/** @file tst_psFits.c +* +* @brief Contains the tests for psFits.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 21:32:57 $ +* +* XXXX: All of the makeTable() tests are failing, as well as one additional one. +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#include + +#define GENIMAGE(img,c,r,TYP, valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for (psU32 row=0;rowdata.TYP[row]; \ + for (psU32 col=0;coldata.S32[x] = x*10+row; + vec->n++; + } + psMetadataAdd(header,PS_LIST_TAIL, "MYVEC", + PS_DATA_VECTOR, + "psVector Item", + vec); + psFree(vec); + + table->data[row] = header; + table->n++; + } + + printf("XXX: The following call to psFitsWriteTable() seg faults\n"); + psFitsWriteTable(fitsFile, NULL, table, NULL); + + psFree(table); + psFree(fitsFile); + return (!psMemCheckLeaks(15,NULL,stderr,false)); +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(509); + + // tst_psFitsOpen() + { + psMemId id = psMemGetId(); + ok(makeMulti(), "Created 'multi' FITS file"); + psFits* fitsFile = psFitsOpen(multiFilename,"r"); + ok(fitsFile != NULL, "psFitsOpen returned non-NULL on existing file"); + int extNum = psFitsGetExtNum(fitsFile); + ok(extNum == 0, "psFitsOpen was queued to the PHU"); + psFitsClose(fitsFile); + + // make sure the file doesn't already exist. + // XXX: What is F_OK? + // if (access("new.fits", F_OK) == 0) { + // if (remove + // ("new.fits") != 0) { + // psError(PS_ERR_UNKNOWN, false, + // "Couldn't delete the new.fits file"); + // return 3; + // } + // } + + fitsFile = psFitsOpen("new.fits","w"); + ok(fitsFile != NULL, "psFitsOpen returned non-NULL on w mode"); + + // write something to the file, otherwise CFITSIO will complain on close + psImage* img = psImageAlloc(16,16,PS_TYPE_F32); + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + // psFree should be equivalent to psFitsClose + psFree(fitsFile); + + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + ok(remove + ("new.fits") == 0, "psFitsOpen seemed to have created a new file"); + + fitsFile = psFitsOpen("new.fits","w+"); + ok(fitsFile != NULL, "psFitsOpen returned non-NULL on w+ mode"); + + // write something to the file, otherwise CFITSIO will complain on close + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + psFitsClose(fitsFile); + + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + ok(remove + ("new.fits") == 0, "psFitsOpen seemed to have created a new file"); + + fitsFile = psFitsOpen("new.fits","a"); + ok(fitsFile != NULL, "psFitsOpen returned non-NULL on a mode"); + + // write something to the file, otherwise CFITSIO will complain on close + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + psFitsClose(fitsFile); + fitsFile = psFitsOpen("new.fits","a+"); + ok(fitsFile != NULL, "psFitsOpen returned non-NULL on a+ mode"); + + psFitsClose(fitsFile); + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + ok(remove + ("new.fits") == 0, "psFitsOpen seemed to have created a new file"); + + // Attempt to allocate with NULL filename + // Following should generate an error message + // XXX: Verify error + fitsFile = psFitsOpen(NULL,"r"); + ok(fitsFile == NULL, "psFitsOpen returned NULL for NULL input"); + + // Attempt to use an unallowed mode + // Following should generate an error message + // XXX: Verify error + fitsFile = psFitsOpen("new.fits","b+"); + ok(fitsFile == NULL, "psFitsOpen returned NULL for NULL input"); + + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsMoveExtName() + { + psMemId id = psMemGetId(); + + ok(makeMulti(), "Created 'multi' FITS file"); + if (! makeMulti() ) + { + return 1; + } + + psFits* fits = psFitsOpen(multiFilename,"r"); + + if (fits == NULL) + { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file"); + return 1; + } + + int numHDUs = psFitsGetSize(fits); + + if (numHDUs < 2) + { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs"); + return 2; + } + + char extName[80]; + psRegion region = {0,0,0,0}; + + for (int lcv = 0; lcv < numHDUs; lcv++) + { + snprintf(extName,80,"ext-%d",lcv); + // try to move to the named extension. + if (! psFitsMoveExtName(fits, extName) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to ext-%d", + lcv); + return 3; + } + + // check to see if I can retrieve the name back from the psFits object. + char* nameFromFile = psFitsGetExtName(fits); + if (strcmp(nameFromFile,extName) != 0) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension name back ('%s' vs '%s'", + nameFromFile, extName); + return 3; + } + psFree(nameFromFile); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (image == NULL || abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv,image->data.F32[0][0],lcv); + return 4; + } + psFree(image); + } + + for (int lcv = numHDUs-1; lcv >= 0; lcv--) + { + snprintf(extName,80,"ext-%d",lcv); + // try to move to the named extension. + if (! psFitsMoveExtName(fits, extName) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to ext-%d", + lcv); + return 5; + } + + // check to see if I can retrieve the name back from the psFits object. + char* nameFromFile = psFitsGetExtName(fits); + if (strcmp(nameFromFile,extName) != 0) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension name back ('%s' vs '%s'", + nameFromFile, extName); + return 5; + } + psFree(nameFromFile); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv,image->data.F32[0][0],lcv); + return 6; + } + psFree(image); + } + + // check to see if given a bogus extension name, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error"); + // XXX: Verify error + if (psFitsMoveExtName(fits, "bogus") || psErrorGetStackSize() != 1) + { + psError(PS_ERR_UNKNOWN, false, + "Moving to non-existant HDU didn't fail"); + return 7; + } + + // check to see if given a NULL psFits, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error"); + // XXX: Verify error + if (psFitsMoveExtName(NULL, "bogus") || psErrorGetStackSize() != 1) + { + psError(PS_ERR_UNKNOWN, false, + "Operation of NULL psFits didn't fail"); + return 8; + } + + // check to see if given a NULL extname, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error"); + // XXX: Verify error + if (psFitsMoveExtName(fits, NULL) || psErrorGetStackSize() != 1) + { + psError(PS_ERR_UNKNOWN, false, + "Operation of NULL extname didn't fail"); + return 9; + } + + psFree(fits); + + // Attempt to get ext name from null fits file + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL fits file"); + if(psFitsGetExtName(NULL) != NULL) + { + psError(PS_ERR_UNKNOWN,true,"Expected NULL return from psFitsGetExtName with NULL fits file"); + return 10; + } + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsMoveExtNum() + { + psMemId id = psMemGetId(); + + ok(makeMulti(), "Created 'multi' FITS file"); + psFits* fits = psFitsOpen(multiFilename,"r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + int numHDUs = psFitsGetSize(fits); + // as a side test, let's make sure psFitsGetSize can handle NULL. + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(psFitsGetSize(NULL) == 0 && psErrorGetStackSize() == 1, + "The 'multi' FITS file has multiple HDUs"); + + ok(numHDUs == 8, "The 'multi' FITS file does not have multiple HDUs"); + + psRegion region = {0,0,0,0}; + // test absolute positioning + for (int lcv = 0; lcv < numHDUs; lcv++) + { + // try to move to the extension + ok(psFitsMoveExtNum(fits, lcv, false), "Moved to extension %d", lcv); + + // check to see if I can retrieve the number back from the psFits object. + ok(psFitsGetExtNum(fits) == lcv, "Retrieved the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + ok(image != NULL && abs(image->data.F32[0][0] - (float)lcv) <= FLT_EPSILON, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv,image->data.F32[0][0],lcv); + psFree(image); + } + + for (int lcv = numHDUs-1; lcv >= 0; lcv--) + { + // try to move to the extension + ok(psFitsMoveExtNum(fits, lcv, false), "Moved to extension %d", lcv); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + ok(abs(image->data.F32[0][0] - (float)lcv) <= FLT_EPSILON, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv, image->data.F32[0][0],lcv); + psFree(image); + } + + // test relative positioning + psFitsMoveExtNum(fits,0,false); + for (int lcv = 1; lcv < numHDUs; lcv++) + { + // try to move to the extension + if (psFitsMoveExtNum(fits, 1, true), "Failed to move to extension %d", lcv) + ; + + // check to see if I can retrieve the number back from the psFits object. + ok(psFitsGetExtNum(fits) == lcv, + "Failed to retrieve the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + ok(image != NULL && abs(image->data.F32[0][0] - (float)lcv) <= FLT_EPSILON, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv,image->data.F32[0][0],lcv); + psFree(image); + } + + for (int lcv = numHDUs-2; lcv >= 0; lcv--) + { + // try to move to the extension + ok(psFitsMoveExtNum(fits, -1, true), "Failed to move to extension %d", lcv); + + // check to see if I can retrieve the number back from the psFits object. + ok(psFitsGetExtNum(fits) == lcv, + "Failed to retrieve the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + ok(abs(image->data.F32[0][0] - (float)lcv) <= FLT_EPSILON, + "The image pixel 0,0 of ext-%d was %g, expected %d", + lcv,image->data.F32[0][0],lcv); + psFree(image); + } + + + // check to see if given a negative extension number, it errors. + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(!psFitsMoveExtNum(fits, -1, false) && psErrorGetStackSize() == 1, + "Moving to negative HDU did fail"); + + // check to see if relative positioning beyond PHU, it errors. + psFitsMoveExtNum(fits,0,false); + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(!psFitsMoveExtNum(fits, -1, true) && psErrorGetStackSize() == 1, + "Moving to negative HDU did fail"); + + // check to see if given a extension greater than the total #HDUs, it errors. + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(!psFitsMoveExtNum(fits, numHDUs, false) && psErrorGetStackSize() == 1, + "Moving to a HDU beyond the file's contents did fail"); + + // check to see if relative positioning beyond PHU, it errors. + psFitsMoveExtNum(fits,numHDUs-1,false); + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(!psFitsMoveExtNum(fits, 1, true) && psErrorGetStackSize() == 1, + "Moving to negative HDU did fail"); + + // check to see if given a NULL psFits, it errors. + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(!psFitsMoveExtNum(NULL, 0, false) && psErrorGetStackSize() == 1, + "Operation of NULL psFits didt fail"); + psFitsClose(fits); + + // Attempt to get ext name from null fits file + // Following should generate an error for NULL fits file + // XXX: Verify error + ok(psFitsGetExtNum(NULL) == PS_FITS_TYPE_NONE, + "Expected NULL return from psFitsGetExtNum with NULL fits file"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + + } + + + // tst_psFitsReadHeader() + { + psMemId id = psMemGetId(); + ok(makeMulti(), "Created 'multi' FITS file"); + + psFits* fits = psFitsOpen(multiFilename,"r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + int numHDUs = psFitsGetSize(fits); + ok(numHDUs >= 8, "The 'multi' FITS file has multiple HDUs"); + + char extname[80]; + for (int hdunum = 0; hdunum < numHDUs; hdunum++) + { + snprintf(extname,80,"ext-%d",hdunum); + psFitsMoveExtNum(fits,hdunum,false); + + psMetadata* header = psFitsReadHeader(NULL,fits); + ok(header != NULL, "Read header"); + + psMetadata* header2 = psMetadataAlloc(); + header2 = psFitsReadHeader(header2,fits); + ok(header2 != NULL, "Read header"); + + ok(header->list->n >= 1 && header->list->n == header2->list->n, + "Reading the header given a NULL input psMetadata did not differ from giving an existing psMetadata"); + + // check for the extra metadata items + psS32 intItem = psMetadataLookupS32(NULL,header, "MYINT"); + psF32 fltItem = psMetadataLookupF32(NULL,header, "MYFLT"); + psF64 dblItem = psMetadataLookupF64(NULL,header, "MYDBL"); + psMetadataItem* boolItem = psMetadataLookup(header, "MYBOOL"); + psString strItem = psMetadataLookupStr(NULL, header, "MYSTR"); + + ok(intItem == hdunum, "Retrieved psS32 metadata item from file"); + + ok(fabsf(fltItem - 1.0f/(float)(1+hdunum)) <= FLT_EPSILON, + "Retrieved psF32 metadata item from file. Got %f vs %f", + fltItem,1.0f/(float)(1+hdunum)); + + ok(abs(dblItem - 1.0/(double)(1+hdunum)) <= DBL_EPSILON, + "Retrieved psF64 metadata item from file. Got %g vs %g", + dblItem, 1.0/(double)(1+hdunum)); + + ok(boolItem != NULL && boolItem->type == PS_DATA_BOOL, + "Retrieved psBool metadata item from file"); + + ok(strItem != NULL && strncmp(strItem,extname,strlen(extname)) == 0, + "Retrieved string metadata item from file. Got '%s' vs '%s' (%d)", + strItem,extname,strlen(extname)); + + psFree(header); + psFree(header2); + } + + // Following should be an error (input psFits = NULL) + // XXX: Verify error + psMetadata* header = psFitsReadHeader(NULL,NULL); + ok(header == NULL && psErrorGetStackSize() == 1, + "psFitsReadHeader didn't error on a NULL psFits"); + + psFree(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsReadHeaderSet() + { + psMemId id = psMemGetId(); + ok(makeMulti(), "Created 'multi' FITS file"); + + psFits* fits = psFitsOpen(multiFilename,"r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + int numHDUs = psFitsGetSize(fits); + ok(numHDUs >= 8, "The 'multi' FITS file has multiple HDUs"); + + // move to the middle + psFitsMoveExtNum(fits,numHDUs/2, false); + psMetadata* headerSet = psFitsReadHeaderSet(NULL,fits); + ok(headerSet != NULL, "psFitsReadHeaderSet returned non-NULL"); + + ok(psFitsGetExtNum(fits) == numHDUs/2, "psFitsReadHeaderSet did not change the CHU"); + + char extname[80]; + for (int i = 0; i < numHDUs; i++) + { + if (i == 0) { + snprintf(extname, 80, "PHU"); + } else { + snprintf(extname, 80, "ext-%d", i); + } + + psMetadata* header = psMetadataLookupPtr(NULL,headerSet, extname); + + ok(header != NULL, "psFitsReadHeader returned non-NULL for HDU#%d", i); + + psS32 intItem = psMetadataLookupS32(NULL, header, "MYINT"); + ok(intItem == i, "psFitsReadHeader for HDU#%d had a MYINT of %d, expected %d", + intItem, i); + } + + psMetadata* set3 = psFitsReadHeaderSet(NULL,fits); + ok(set3 != NULL, "psFitsReadHeaderSet returned non-NULL"); + + for (int i = 0; i < numHDUs; i++) + { + if (i == 0) { + snprintf(extname, 80, "PHU"); + } else { + snprintf(extname, 80, "ext-%d", i); + } + + psMetadata* header = psMetadataLookupPtr(NULL, set3, extname); + ok(header != NULL, "psFitsReadHeader returned non-NULL for HDU#%d", i); + + psS32 intItem = psMetadataLookupS32(NULL, header, "MYINT"); + ok(intItem == i, "psFitsReadHeader for HDU#%d had a MYINT of %d, expected %d", + intItem, i); + } + + set3 = psFitsReadHeaderSet(set3,NULL); + ok(set3 == NULL, "psFitsReadHeaderSet returned NULL given a NULL psFits"); + + + psFree(headerSet); + psFitsClose(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsReadTable() + // XXXX: This is if'ed out because the call to makeTable() is seg faulting + if (0) { + psMemId id = psMemGetId(); + ok(makeTable(), "Created 'table' FITS file"); + psFits* fits = psFitsOpen(tableFilename, "r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + psFitsMoveExtNum(fits,1,false); + psArray* table = psFitsReadTable(fits); + ok(table != NULL, "psFitsReadTable returned non-NULL"); + ok(table->n == tableNumRows, "Expected %d rows, read %d", + tableNumRows, table->n); + + for (int row = 0; row < table->n; row++) { + psMetadata* rowData = table->data[row]; + + psS32 intItem = psMetadataLookupS32(NULL, rowData, "MYINT"); + psF32 fltItem = psMetadataLookupF32(NULL, rowData, "MYFLT"); + psF64 dblItem = psMetadataLookupF64(NULL, rowData, "MYDBL"); + psBool boolItem = psMetadataLookupBool(NULL, rowData, "MYBOOL"); + psString strItem = psMetadataLookupStr(NULL, rowData, "MYSTR"); + psVector* vecItem = psMetadataLookupPtr(NULL, rowData, "MYVEC"); + + ok(intItem == row, + "Failed to retrieve psS32 metadata item from file (row=%d). Got %d vs %d", + row, intItem, row); + + ok(fabsf(fltItem - 1.0f/(float)(1+row)) <= FLT_EPSILON, + "Retrieved psF32 metadata item from file (row=%d). Got %f vs %f", + row, fltItem,1.0f/(float)(1+row)); + + ok(abs(dblItem - 1.0/(double)(1+row)) <= DBL_EPSILON, + "Retrieved psF64 metadata item from file (row=%d). Got %g vs %g", + row, dblItem, 1.0/(double)(1+row)); + + ok(!(boolItem != ((row&0x01) == 0)), + "Retrieved psBool metadata item from file (row=%d). Got %d vs %d", + row, boolItem, ((row&0x01) == 0)); + + char strValue[16]; + snprintf(strValue,16,"row=%d",row+1); + ok(strncmp(strItem,strValue,strlen(strValue)) == 0, + "Retrieved psString metadata item from file (row=%d). Got '%s' vs '%s'", + row, strItem, strValue); + + ok(vecItem != NULL, "Retrieved psVector metadata item from file (row=%d)", row); + + ok(vecItem->type.type == PS_DATA_S32 && + vecItem->data.S32[0] == row && + vecItem->data.S32[3] == row+30, + "Retrieved psVector (row=%d) had expected values [%d,%d,%d,%d] vs [%d,%d,%d,%d]", + row,vecItem->data.S32[0], vecItem->data.S32[1], + vecItem->data.S32[2], vecItem->data.S32[3], + row,row+10,row+20,row+30); + } + + psFree(table); + psFree(fits); + + psArray* nullTest = psFitsReadTable(NULL); + ok(nullTest == NULL && psErrorGetStackSize() == 1, + "psFitsReadTable returned NULL when given NULL"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsReadTableColumnNum() + // XXXX: This is if'ed out because the call to makeTable() is seg faulting + if (0) { + psMemId id = psMemGetId(); + ok(makeTable(), "Created 'table' FITS file"); + psFits* fits = psFitsOpen(tableFilename,"r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + psFitsMoveExtNum(fits,1,false); + // read the column data via number + psVector* colData; + psElemType type[4] = {PS_TYPE_S32, PS_TYPE_F32, PS_TYPE_F32, PS_TYPE_BOOL}; + psElemType altType[4] = {PS_TYPE_S64, PS_TYPE_F64, PS_TYPE_F64, PS_TYPE_BOOL}; + char* colname[4] = {"MYINT","MYFLT","MYDBL","MYBOOL"}; + psF64 expectedValues[4][10] = { + {0,1,2,3,4,5,6,7,8,9}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0} + }; + + for (int col = 0; col < 4; col++) { + colData = psFitsReadTableColumnNum(fits,colname[col]); + ok(colData != NULL, "psFitsReadTableColumnNum returned non-NULL for col=%d"); + + if (colData->type.type != type[col] && + colData->type.type != altType[col]) { + char* typeRead; + char* typeExpected; + PS_TYPE_NAME(typeRead, colData->type.type); + PS_TYPE_NAME(typeExpected, type[col]); + + ok(false, "psFitsReadTableColumnNum returned different type, %s vs %s, for col=%d", + typeRead, typeExpected, col); + } else { + ok(true, "psFitsReadTableColumnNum returned same type"); + } + ok(colData->n == tableNumRows, + "psFitsReadTableColumnNum returned same number of rows, %d vs %d, for col=%d", + colData->n, tableNumRows, col); + for (int row = 0; row < tableNumRows; row++) { + ok(abs(p_psVectorGetElementF64(colData,row) - expectedValues[col][row]) <= FLT_EPSILON, + "psFitsReadTableColumnNum returned values (%g vs %g) for col=%d", + p_psVectorGetElementF64(colData,row), expectedValues[col][row], col); + } + psFree(colData); + } + + // Following should be an error + // XXX: Verify error + psErrorClear(); + psVector* data = psFitsReadTableColumnNum(NULL,colname[0]); + psErr* err = psErrorLast(); + ok(data == NULL, "psFitsReadTableColumnNum did return NULL with NULL psFits"); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psFitsReadTableColumnNum did return error with NULL psFits"); + psFree(err); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + data = psFitsReadTableColumnNum(fits,"BOGUS"); + err = psErrorLast(); + ok(data == NULL, "psFitsReadTableColumnNum did return NULL with bogus column name"); + ok(err->code == PS_ERR_IO, "psFitsReadTableColumnNum did return error with bogus column name"); + psFree(err); + psFree(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsReadTableColumn() + // XXXX: This is if'ed out because the call to makeTable() is seg faulting + if (0) { + psMemId id = psMemGetId(); + ok(makeTable(), "Created 'table' FITS file"); + psFits* fits = psFitsOpen(tableFilename,"r"); + ok(fits != NULL, "psFitsOpen returned non-NULL on existing file"); + + psFitsMoveExtNum(fits,1,false); + // read the column data via number + psArray* colData; + char* colname[4] = {"MYINT","MYFLT","MYDBL","MYBOOL"}; + psF64 expectedValues[3][10] = { + {0,1,2,3,4,5,6,7,8,9}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0} + }; + char* expectedBoolValues[10] = {"T","F","T","F","T","F","T","F","T","F"}; + char* expectedStrValues[10] = {"row=1","row=2","row=3","row=4","row=5","row=6","row=7","row=8","row=9","row=10"}; + + bool errorFlag = false; + for (int col = 0; col < 4; col++) { + colData = psFitsReadTableColumn(fits,colname[col]); + if (colData == NULL) { + diag("psFitsReadTableColumn returned NULL for col=%d", col); + errorFlag = true; + } + if (colData->n != tableNumRows) { + diag("psFitsReadTableColumn returned different number of rows, %d vs %d, for col=%d", + colData->n, tableNumRows, col); + errorFlag = true; + } + if (col < 3) { + for (int row = 0; row < tableNumRows; row++) { + if (abs(atof((char*)colData->data[row]) - expectedValues[col][row]) > 0.0001) { + diag("psFitsReadTableColumn returned unexpected values (%g vs %g) for col=%d", + atof((char*)colData->data[row]), expectedValues[col][row], col); + errorFlag = true; + } + } + } else if (col == 3) { + for (int row = 0; row < tableNumRows; row++) { + if (strncmp(colData->data[row],expectedBoolValues[row], + strlen(expectedBoolValues[row])) != 0) { + diag("psFitsReadTableColumn returned unexpected values ('%s' vs '%s') for col=%d", + (char*)colData->data[row], expectedBoolValues[row], col); + errorFlag = true; + } + } + } else if (col == 4) { + for (int row = 0; row < tableNumRows; row++) { + if (strncmp(colData->data[row],expectedStrValues[row], + strlen(expectedStrValues[row])) != 0) { + diag("psFitsReadTableColumn returned unexpected values ('%s' vs '%s') for col=%d", + (char*)colData->data[row], expectedStrValues[row], col); + errorFlag = true; + } + } + } + psFree(colData); + } + ok(!errorFlag, "psFitsReadTableColumn() produced the correct data"); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + psArray* data = psFitsReadTableColumn(NULL,"MYINT"); + psErr* err = psErrorLast(); + ok(data == NULL, "psFitsReadTableColumn did return NULL with NULL psFits"); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psFitsReadTableColumn did error with NULL psFits"); + psFree(err); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + data = psFitsReadTableColumn(fits,"BOGUS"); + err = psErrorLast(); + ok(data == NULL, "psFitsReadTableColumn did return NULL with col=\"BOGUS\""); + ok(err->code == PS_ERR_IO, "psFitsReadTableColumn did error with col=\"BOGUS\""); + psFree(err); + + psFree(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsUpdateTable() + // XXXX: This is if'ed out because the call to makeTable() is seg faulting + if (0) { + psMemId id = psMemGetId(); + psErr* err; + char* strValue[] = { + "row A", + "row B", + "row C", + "row D", + "row E", + "row F", + "row G", + "row H", + "row I", + "row J", + "row K" + }; + ok(makeTable(), "Created 'table' FITS file"); + psFits* fits = psFitsOpen(tableFilename,"rw"); + ok(fits != NULL, "psFitsOpen returned NULL on existing file"); + psFitsMoveExtNum(fits,1,false); + // change the data in the file, going past by one (implicit new row of data) + bool errorFlag = false; + for (int row = 0; row < tableNumRows+1; row++) { + psMetadata* md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"MYFLT", 0,"",(float)row/-10.0); + psMetadataAddF64(md,PS_LIST_TAIL,"MYDBL", 0,"",(double)row/-100.0); + psMetadataAddS32(md,PS_LIST_TAIL,"MYINT", 0,"",-row); + psMetadataAddBool(md,PS_LIST_TAIL,"MYBOOL", 0,"",((row & 1) == 1)); + psMetadataAddStr(md,PS_LIST_TAIL,"MYSTR", 0,"",strValue[row]); + + + + + + + + + + + + + + + if (!psFitsUpdateTable(fits,md,row)) { + diag("psFitsUpdateTable returned false, but expected true for row=%d", row); + errorFlag = true; + } + psFree(md); + } + ok(!errorFlag, "psFitsUpdateTable() produced the correct data"); + + for (int row = 0; row < tableNumRows+1; row++) { + psMetadata* md = psFitsReadTableRow(fits, row); + if (abs(psMetadataLookupF32(NULL,md,"MYFLT") - (float)row/-10.0) > FLT_EPSILON) { + diag("psFitsUpdateTable did not change the float value for row=%d", row); + errorFlag = true; + } + if (abs(psMetadataLookupF64(NULL,md,"MYDBL") - (float)row/-100.0) > FLT_EPSILON) { + diag("psFitsUpdateTable did not change the double value for row=%d", row); + errorFlag = true; + } + if (psMetadataLookupS32(NULL,md,"MYINT") != -row) { + diag("psFitsUpdateTable did not change the integer value for row=%d", row); + errorFlag = true; + } + if (psMetadataLookupBool(NULL,md,"MYBOOL") != ((row &1) == 1)) { + diag("psFitsUpdateTable did not change the boolean value for row=%d", row); + errorFlag = true; + } + psString mystr = psMetadataLookupStr(NULL,md,"MYSTR"); + if (strncmp(mystr,strValue[row], strlen(strValue[row])) != 0) { + diag("psFitsUpdateTable did not change the string value for row=%d", row); + errorFlag = true; + } + psFree(md); + } + ok(!errorFlag, "psFitsUpdateTable() produced the correct data"); + + psMetadata* md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"BOGUS", 0,"",-1.0f); + // Following should be a warning + // XXX: Verify warning + psErrorClear(); + ok(psFitsUpdateTable(fits,md,0), "psFitsUpdateTable did return false with bogus column data"); + psFree(md); + + md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"MYFLT", 0,"",-1.0f); + psMetadataAddF64(md,PS_LIST_TAIL,"MYDBL", 0,"",-2.0); + psMetadataAddS32(md,PS_LIST_TAIL,"MYINT", 0,"",-3); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(psFitsUpdateTable(NULL,md,0), "psFitsUpdateTable did return false with NULL psFits"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, "psFitsUpdateTable did error with NULL psFits"); + psFree(err); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(psFitsUpdateTable(fits,NULL,0), "psFitsUpdateTable did return false with NULL psMetadata"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, "psFitsUpdateTable did error with NULL psMetadata"); + psFree(err); + + // Following should be an error + // XXX: Verify error + psErrorClear(); + ok(psFitsUpdateTable(fits,md,-1), "psFitsUpdateTable did return false with row=-1"); + err = psErrorLast(); + ok(err->code == PS_ERR_IO, "psFitsUpdateTable did error with row=-1"); + + psFree(err); + psFree(md); + psFitsClose(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRead() + { + psS32 N = 256; + psS32 M = 128; + + // This function shall open the specified FITS file, read the specified data + // and place the data into a psImage structure. This function shall generate + // an error message and return NULL if any of the input parameters are out of + // range, image file doesn't exist or image is zero or one dimensional. + // Verify the returned psImage structure contains expected values, if the input + // parameter filename specifies an available FITS file with known 2dimensional + // data, input parameters col, row, ncol, nrow, z specify data range with the + // FITS file. Cases should include 1x1, Nx1, 1xN, NxN and MxN sub images and + // total FITS file image. (done in macro) + // Verify the returned psImage structure is equal to the input parameter + // 'output', if specified. (done in macro) + + #define testReadTypeSize(m, n, readM0, readN0, readM, readN, TYP, filename) \ + { \ + psMemId id = psMemGetId(); \ + psImage* img = NULL; \ + psImage* img2 = NULL; \ + psImage* img3 = NULL; \ + psImage* img4 = NULL; \ + \ + GENIMAGE(img,m,n,TYP,row+2*col); \ + img2 = psImageCopy(img2,img,PS_TYPE_##TYP); \ + GENIMAGE(img3,m,n,TYP,row+2*col); \ + psImageClip(img3,32.0,32.0,120.0,120.0); \ + img4 = psImageCopy(img4,img3,PS_TYPE_##TYP); \ + psFits* fits = psFitsOpen(filename, "w"); \ + ok(psFitsWriteImage(fits, NULL, img, 2, NULL), "Wrote test image %s",filename); \ + ok(psFitsUpdateImage(fits,img3, 0,0, 1), "Wrote test image %s",filename); \ + ok(psFitsWriteImage(fits,NULL, img3, 2, NULL), "Wrote test image %s",filename); \ + ok(psFitsUpdateImage(fits,img, 0, 0, 1), "Wrote test image %s",filename); \ + psFree(img); \ + psFree(fits); \ + img = NULL; \ + psFree(img3); \ + img3 = NULL; \ + fits = psFitsOpen(filename,"r"); \ + psRegion reg = {readM0, readM, readN0, readN}; \ + img = psFitsReadImage(fits, reg, 0); \ + img3 = psFitsReadImage(fits, reg, 1); \ + ok(img3 != NULL, "Read test image %s",filename); \ + bool errorFlag = false; \ + for (psU32 row = readN0; row < readN; row++) { \ + ps##TYP* imgRow = img->data.TYP[row-readN0]; \ + ps##TYP* img2Row = img2->data.TYP[row]; \ + ps##TYP* img3Row = img3->data.TYP[row-readN0]; \ + ps##TYP* img4Row = img4->data.TYP[row]; \ + for (psU32 col = readM0; col < readM; col++) { \ + if (fabsf(imgRow[col-readM0]-img2Row[col]) > FLT_EPSILON) { \ + diag("Image changed in I/O operation at %d,%d,0 (%.2f vs %.2f) for %s", \ + col,row,(psF32)imgRow[col-readM0],(psF32)img2Row[col],filename); \ + errorFlag = true; \ + } \ + if (fabsf(img3Row[col-readM0]-img4Row[col]) > FLT_EPSILON) { \ + diag("Image changed in I/O operation at %d,%d,1 (%.2f vs %.2f) for %s", \ + col,row,(psF32)img3Row[col-readM0],(psF32)img4Row[col],filename); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psFitsReadImage() produced the correct data"); \ + psFree(img); \ + img = NULL; \ + psFree(img3); \ + img3 = NULL; \ + psFitsMoveExtNum(fits,1, false); \ + img3 = psFitsReadImage(fits, reg, 0); \ + img = psFitsReadImage(fits, reg, 1); \ + ok(img != NULL, "Read test image %s",filename); \ + errorFlag = false; \ + for (psU32 row = readN0; row < readN; row++) { \ + ps##TYP* imgRow = img->data.TYP[row-readN0]; \ + ps##TYP* img2Row = img2->data.TYP[row]; \ + ps##TYP* img3Row = img3->data.TYP[row-readN0]; \ + ps##TYP* img4Row = img4->data.TYP[row]; \ + for (psU32 col = readM0; col < readM; col++) { \ + if (fabsf(imgRow[col-readM0]-img2Row[col]) > FLT_EPSILON) { \ + diag("Image changed in I/O operation at %d,%d,0 (%.2f vs %.2f) for %s", \ + col,row,(psF32)imgRow[col-readM0],(psF32)img2Row[col],filename); \ + errorFlag = true; \ + } \ + if (fabsf(img3Row[col-readM0]-img4Row[col]) > FLT_EPSILON) { \ + diag("Image changed in I/O operation at %d,%d,1 (%.2f vs %.2f) for %s", \ + col,row,(psF32)img3Row[col-readM0],(psF32)img4Row[col],filename); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psFitsReadImage() produced the correct data"); \ + psFree(img); \ + psFree(img2); \ + psFree(img3); \ + psFree(img4); \ + psFree(fits); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + #define testReadType(TYP,filename) \ + testReadTypeSize(1,1,0,0,0,0,TYP,"tmpImages/1x1_" filename); \ + testReadTypeSize(M,1,M/4,0,M*3/4,0,TYP,"tmpImages/Mx1_" filename); \ + testReadTypeSize(1,N,0,N/4,0,N*3/4,TYP,"tmpImages/1xN_" filename); \ + testReadTypeSize(M,N,M/4,N/4,M*3/4,N*3/4,TYP,"tmpImages/MxN_" filename); + + system("mkdir tmpImages"); + + testReadType(U8,"U8.fits"); + testReadType(S8,"S8.fits"); // Not a requirement + testReadType(S16,"S16.fits"); + testReadType(U16,"U16.fits"); // Not a requirement + testReadType(S32,"S32.fits"); + testReadType(U32,"U32.fits"); // Not a requirement + testReadType(F32,"F32.fits"); + testReadType(F64,"F64.fits"); + + // Attempt to read from NULL fits object + // Following should generate error message for NULL psFits + // XXX: Verify error + // XXXX: This is seg-faulting + if (0) + { + psMemId id = psMemGetId(); + psRegion region = { + 0,0,0,0 + }; + ok(psFitsReadImage(NULL,region,0) == NULL, "Did return NULL for NULL psFits"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + \ + } + } + + + // testImageWrite() + { + psMemId id = psMemGetId(); + psImage* img = NULL; + psImage* img2 = NULL; + psS32 m = 64; + psS32 n = 96; + + // This function shall write the specified section within a psImage structure + // to a FITS file. If the specifiedfile exists, then data should overwrite the + // section to write. If the specified file doesn't exist, it shall be created. + // If an extenstion is specified, then a basic primary header data unit shall + // be created. + // + // Verify a FITS file named filename is generated and contains expected + // values, if the input parameter input contains known data values, input + // parameters col, row, ncol, nrow specify a valid data region within psImage + // structure. + // + // Verify a FITS file named filename is generated and contains a primary + // header data unit with extension with expected values, if the input + // parameter input contains known data values, input parameters col, row, + // ncol, nrow specify a valid data region within psImage structure and + // extname and/or extnum specify an extenstion to write. + // + // N.B. : these are done in testImageRead tests, see above. + // + // Verify a FITS file named filename is overwritten and contains + // expected values, if the input parameter input contains known data values, + // input parameters col, row, ncol, nrow specify a valid data region within + // psImage structure. + + GENIMAGE(img,m,n,F32,0); + GENIMAGE(img2,m,n,F32,row+2*col); + system("mkdir tmpImages"); + psFits* fits = psFitsOpen("tmpImages/writeTest.fits","w"); + + ok(psFitsWriteImage(fits, NULL, img,1, NULL), "Wrote writeTest.fits"); + ok(psFitsUpdateImage(fits, img2, 0, 0, 0), "Updated writeTest.fits"); + psFree(img); + psFree(img2); + + // Did it really overwrite the pixel values? Let's read it in and see. + psFitsClose(fits); + + psRegion region = {0,0,0,0}; + fits = psFitsOpen("tmpImages/writeTest.fits","r"); + img = NULL; + img = psFitsReadImage(fits, region, 0); + ok(img != NULL, "Read in writeTest.fits"); + bool errorFlag = false; + for (psU32 row=0;rowdata.F32[row]; + for (psU32 col=0;col FLT_EPSILON) { + diag("The image values were not overwritten at %d,%d (%.2f vs %.2f)", + col,row,imgRow[col],(row+2*col)); + errorFlag = true; + } + } + } + ok(!errorFlag, "psFitsReadImage() produced the correct data"); + + psFree(img); + + // Verify false is returned and program execution is not stopped, if the input image + // is null. + // Following should generate an error message because input image is null + // XXX: Verify error + ok(!psFitsWriteImage(fits,NULL,NULL, 1, NULL), + "psImageWriteSection did return false when input image is NULL"); + psFree(fits); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // tst_psFitsWriteHeader() + { + psMemId id = psMemGetId(); + ok(makeMulti(), "Created 'multi' FITS file"); + + psMetadata* header = psMetadataAlloc(); + psFits* fitsFile = psFitsOpen(multiFilename,"a+"); + + // Test psFitsReadWrite generates files from psFitsWriteImage which calls psFitsWriteHeader + // so these additional tests check for error conditions + // Attempt call function with NULL metadata + ok(!psFitsWriteHeader(fitsFile, NULL), "Expected return of true for NULL metadata pointer"); + psFree(fitsFile); + + // Attempt to call function with NULL fits + ok(!psFitsWriteHeader(NULL, header), "Expected return of true for NULL fits file pointer"); + psFree(header); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/fits/tap_psFitsBlank_00.c =================================================================== --- /branches/rel-1-1/psLib/test/fits/tap_psFitsBlank_00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fits/tap_psFitsBlank_00.c (revision 12167) @@ -0,0 +1,82 @@ +#include +#include +#include // needed for unlink() + +#include "tap.h" +#include "pstap.h" + +int main(void) + +{ + plan_tests(15); + + psArray *table = psArrayAllocEmpty (10); + for (int i = 0; i < table->nalloc; i++) { + psMetadata *row = psMetadataAlloc (); + psMetadataAdd (row, PS_LIST_TAIL, "X_PIX", PS_DATA_F32, "", 2.0*i); + psMetadataAdd (row, PS_LIST_TAIL, "Y_PIX", PS_DATA_F32, "", 4.0*i); + psArrayAdd (table, 10, row); + } + + psImage *image = psImageAlloc (512, 512, PS_DATA_F32); + + psFits *fits = psFitsOpen ("test.fits", "w"); + + psMetadata *header = psMetadataAlloc (); + + for (int i = 0; i < 5; i++) { + char name[80]; + + sprintf (name, "blank.%02d", i); + psMetadataAddStr (header, PS_LIST_TAIL, "TESTNAME", PS_META_REPLACE, "test name", name); + // psFitsMoveLast (fits); + psFitsWriteBlank (fits, header, "testext"); + + sprintf (name, "image.%02d", i); + psMetadataAddStr (header, PS_LIST_TAIL, "TESTNAME", PS_META_REPLACE, "test name", name); + psFitsWriteImage (fits, header, image, 1, "testext"); + + sprintf (name, "table.%02d", i); + psMetadataAddStr (header, PS_LIST_TAIL, "TESTNAME", PS_META_REPLACE, "test name", name); + psMetadataAddStr (header, PS_LIST_TAIL, "EXTTYPE", PS_META_REPLACE, "type", "SMPDATA"); + psMetadataAddStr (header, PS_LIST_TAIL, "EXTHEAD", PS_META_REPLACE, "head", "image.00"); + psMetadataAddStr (header, PS_LIST_TAIL, "EXTDATA", PS_META_REPLACE, "data", "blank.00"); + psFitsWriteTable (fits, header, table, "testext"); + } + + psFitsClose (fits); + + fits = psFitsOpen ("test.fits", "r"); + for (int i = 0; i < 5; i++) { + char *name, expect[80]; + + psMetadata *outhead = psMetadataAlloc (); + + fprintf (stderr, "top: %d\n", psFitsGetExtNum (fits)); + + psFitsReadHeader (outhead, fits); + sprintf (expect, "blank.%02d", i); + name = psMetadataLookupStr (NULL, outhead, "TESTNAME"); + ok (!strcmp(name, expect), "got TESTNAME = %s, expected %s", name, expect); + psFitsMoveExtNum (fits, 1, true); + fprintf (stderr, "curr: %d\n", psFitsGetExtNum (fits)); + + psFitsReadHeader (outhead, fits); + sprintf (expect, "image.%02d", i); + name = psMetadataLookupStr (NULL, outhead, "TESTNAME"); + ok (!strcmp(name, expect), "got TESTNAME = %s, expected %s", name, expect); + psFitsMoveExtNum (fits, 1, true); + fprintf (stderr, "curr: %d\n", psFitsGetExtNum (fits)); + + psFitsReadHeader (outhead, fits); + sprintf (expect, "table.%02d", i); + name = psMetadataLookupStr (NULL, outhead, "TESTNAME"); + ok (!strcmp(name, expect), "got TESTNAME = %s, expected %s", name, expect); + psFitsMoveExtNum (fits, 1, true); + fprintf (stderr, "curr: %d\n", psFitsGetExtNum (fits)); + } + psFitsClose (fits); + unlink ("test.fits"); + + exit (0); +} Index: /branches/rel-1-1/psLib/test/fits/tst_psFits.c =================================================================== --- /branches/rel-1-1/psLib/test/fits/tst_psFits.c (revision 12167) +++ /branches/rel-1-1/psLib/test/fits/tst_psFits.c (revision 12167) @@ -0,0 +1,1665 @@ +/** @file tst_psFits.c +* +* @brief Contains the tests for psFits.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.25 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-07-26 03:37:04 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" + +#define GENIMAGE(img,c,r,TYP, valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for (psU32 row=0;rowdata.TYP[row]; \ + for (psU32 col=0;coln = tableNumRows; + psMetadata* header = NULL; + for (int row = 0; row < tableNumRows; row++) { + header = psMetadataAlloc(); + + psMetadataAdd(header,PS_LIST_TAIL, "MYINT", + PS_DATA_S32, + "psS32 Item", + (psS32)row); + + psMetadataAdd(header,PS_LIST_TAIL, "MYFLT", + PS_DATA_F32, + "psF32 Item", + (float)(1.0f/(float)(1+row))); + + psMetadataAdd(header,PS_LIST_TAIL, "MYDBL", + PS_DATA_F64, + "psF64 Item", + (double)(1.0/(double)(1+row))); + + psMetadataAdd(header,PS_LIST_TAIL, "MYBOOL", + PS_DATA_BOOL, + "psBool Item", + (row%2 == 0)); + + char* str = NULL; + psStringAppend(&str,"row=%d",row+1); + psMetadataAdd(header,PS_LIST_TAIL, "MYSTR", + PS_DATA_STRING, + "psString Item", + str); + psFree(str); + + psVector* vec = psVectorAlloc(5,PS_TYPE_S32); + for (int x=0; x < 4; x++) { + vec->data.S32[x] = x*10+row; + vec->n++; + } + psMetadataAdd(header,PS_LIST_TAIL, "MYVEC", + PS_DATA_VECTOR, + "psVector Item", + vec); + psFree(vec); + + table->data[row] = header; + table->n++; + } + + psFitsWriteTable(fitsFile, NULL, table, NULL); + + psFree(table); + psFree(fitsFile); + // return 1; + return (!psMemCheckLeaks(15,NULL,stderr,false)); +} + +psS32 tst_psFitsOpen( void ) +{ + + if (! makeMulti() ) { + return 1; + } + + psFits* fitsFile = psFitsOpen(multiFilename,"r"); + + if (fitsFile == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + int extNum = psFitsGetExtNum(fitsFile); + if (extNum != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen was not queued to the PHU, but to extension #%d.", + extNum); + return 2; + } + + psFitsClose(fitsFile); + + // make sure the file doesn't already exist. + if (access("new.fits", F_OK) == 0) { + if (remove + ("new.fits") != 0) { + psError(PS_ERR_UNKNOWN, false, + "Couldn't delete the new.fits file."); + return 3; + } + } + + fitsFile = psFitsOpen("new.fits","w"); + + if (fitsFile == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on w mode."); + return 4; + } + + // write something to the file, otherwise CFITSIO will complain on close + psImage* img = psImageAlloc(16,16,PS_TYPE_F32); + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + + psFree(fitsFile); // psFree should be equivalent to psFitsClose + + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + if (remove + ("new.fits") != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen seemed to not have created a new file."); + return 5; + } + + fitsFile = psFitsOpen("new.fits","w+"); + + if (fitsFile == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on w+ mode."); + return 6; + } + + // write something to the file, otherwise CFITSIO will complain on close + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + + psFitsClose(fitsFile); + + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + if (remove + ("new.fits") != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen seemed to not have created a new file."); + return 7; + } + + fitsFile = psFitsOpen("new.fits","a"); + + if (fitsFile == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on a mode."); + return 8; + } + + // write something to the file, otherwise CFITSIO will complain on close + psFitsWriteImage(fitsFile,NULL,img,1,NULL); + + psFitsClose(fitsFile); + + fitsFile = psFitsOpen("new.fits","a+"); + + if (fitsFile == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on a+ mode."); + return 9; + } + + psFitsClose(fitsFile); + + // now, if psFitsOpen actually created the file, I shouldn't error in removing it. + if (remove + ("new.fits") != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen seemed to not have created a new file."); + return 10; + } + + // Attempt to allocate with NULL filename + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + fitsFile = psFitsOpen(NULL,"r"); + if(fitsFile != NULL) { + psError(PS_ERR_UNKNOWN,true,"psFitsOpen did not return NULL for NULL input"); + return 11; + } + + // Attempt to use an invalid mode + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + fitsFile = psFitsOpen("new.fits","b+"); + if(fitsFile != NULL) { + psError(PS_ERR_UNKNOWN,true,"psFitsOpen did not return NULL for NULL input"); + return 12; + } + + psFree(img); + + return 0; +} + +psS32 tst_psFitsMoveExtName( void ) +{ + + if (! makeMulti() ) { + return 1; + } + + psFits* fits = psFitsOpen(multiFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + int numHDUs = psFitsGetSize(fits); + + if (numHDUs < 2) { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs."); + return 2; + } + + char extName[80]; + psRegion region = {0,0,0,0}; + + for (int lcv = 0; lcv < numHDUs; lcv++) { + snprintf(extName,80,"ext-%d",lcv); + // try to move to the named extension. + if (! psFitsMoveExtName(fits, extName) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to ext-%d.", + lcv); + return 3; + } + + // check to see if I can retrieve the name back from the psFits object. + char* nameFromFile = psFitsGetExtName(fits); + if (strcmp(nameFromFile,extName) != 0) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension name back ('%s' vs '%s'", + nameFromFile, extName); + return 3; + } + psFree(nameFromFile); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (image == NULL || abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 4; + } + psFree(image); + } + + for (int lcv = numHDUs-1; lcv >= 0; lcv--) { + snprintf(extName,80,"ext-%d",lcv); + // try to move to the named extension. + if (! psFitsMoveExtName(fits, extName) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to ext-%d.", + lcv); + return 5; + } + + // check to see if I can retrieve the name back from the psFits object. + char* nameFromFile = psFitsGetExtName(fits); + if (strcmp(nameFromFile,extName) != 0) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension name back ('%s' vs '%s'", + nameFromFile, extName); + return 5; + } + psFree(nameFromFile); + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 6; + } + psFree(image); + } + + // check to see if given a bogus extension name, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + if (psFitsMoveExtName(fits, "bogus") || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Moving to non-existant HDU didn't fail."); + return 7; + } + + // check to see if given a NULL psFits, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + if (psFitsMoveExtName(NULL, "bogus") || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Operation of NULL psFits didn't fail."); + return 8; + } + + // check to see if given a NULL extname, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + if (psFitsMoveExtName(fits, NULL) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Operation of NULL extname didn't fail."); + return 9; + } + + psFree(fits); + + // Attempt to get ext name from null fits file + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL fits file"); + if(psFitsGetExtName(NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Expected NULL return from psFitsGetExtName with NULL fits file"); + return 10; + } + + return 0; +} + +psS32 tst_psFitsMoveExtNum( void ) +{ + + if (! makeMulti() ) { + return 1; + } + + psFits* fits = psFitsOpen(multiFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + int numHDUs = psFitsGetSize(fits); + + // as a side test, let's make sure psFitsGetSize can handle NULL. + psLogMsg(__func__,PS_LOG_INFO, + "Following should be an error."); + psErrorClear(); + if (psFitsGetSize(NULL) != 0 || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs."); + return 2; + } + + if (numHDUs != 8) { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs."); + return 2; + } + + psRegion region = {0,0,0,0}; + + // test absolute positioning + for (int lcv = 0; lcv < numHDUs; lcv++) { + // try to move to the extension + if (! psFitsMoveExtNum(fits, lcv, false) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to extension %d.", + lcv); + return 3; + } + + // check to see if I can retrieve the number back from the psFits object. + if (psFitsGetExtNum(fits) != lcv) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + return 5; + } + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + if (image == NULL || abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 4; + } + psFree(image); + } + + for (int lcv = numHDUs-1; lcv >= 0; lcv--) { + // try to move to the extension + if (! psFitsMoveExtNum(fits, lcv, false) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to extension %d.", + lcv); + return 5; + } + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 6; + } + psFree(image); + } + + // test relative positioning + psFitsMoveExtNum(fits,0,false); + for (int lcv = 1; lcv < numHDUs; lcv++) { + // try to move to the extension + if (! psFitsMoveExtNum(fits, 1, true) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to extension %d.", + lcv); + return 13; + } + + // check to see if I can retrieve the number back from the psFits object. + if (psFitsGetExtNum(fits) != lcv) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + return 13; + } + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (image == NULL || abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 14; + } + psFree(image); + } + + for (int lcv = numHDUs-2; lcv >= 0; lcv--) { + // try to move to the extension + if (! psFitsMoveExtNum(fits, -1, true) ) { + psError(PS_ERR_UNKNOWN, false, + "Failed to move to extension %d.", + lcv); + return 15; + } + + // check to see if I can retrieve the number back from the psFits object. + if (psFitsGetExtNum(fits) != lcv) { // hey, it didn't move? + psError(PS_ERR_UNKNOWN, false, + "Failed to retrieve the extension number back (%d vs %d)", + psFitsGetExtNum(fits), lcv); + return 15; + } + + // check that the image is associated to the extension moved, i.e., + // did we really move to the proper extension? + psImage* image = NULL; + image = psFitsReadImage(fits,region,0); + + if (abs(image->data.F32[0][0] - (float)lcv) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "The image pixel 0,0 of ext-%d was %g, expected %d.", + lcv,image->data.F32[0][0],lcv); + return 16; + } + psFree(image); + } + + // check to see if given a negative extension number, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psErrorClear(); + if (psFitsMoveExtNum(fits, -1, false) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Moving to negative HDU didn't fail."); + return 21; + } + + // check to see if relative positioning beyond PHU, it errors. + psFitsMoveExtNum(fits,0,false); + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psErrorClear(); + if (psFitsMoveExtNum(fits, -1, true) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Moving to negative HDU didn't fail."); + return 22; + } + + + // check to see if given a extension greater than the total #HDUs, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psErrorClear(); + if (psFitsMoveExtNum(fits, numHDUs, false) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Moving to a HDU beyond the file's contents didn't fail."); + return 31; + } + + // check to see if relative positioning beyond PHU, it errors. + psFitsMoveExtNum(fits,numHDUs-1,false); + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psErrorClear(); + if (psFitsMoveExtNum(fits, 1, true) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Moving to negative HDU didn't fail."); + return 32; + } + + // check to see if given a NULL psFits, it errors. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psErrorClear(); + if (psFitsMoveExtNum(NULL, 0, false) || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, false, + "Operation of NULL psFits didn't fail."); + return 40; + } + + psFitsClose(fits); + + // Attempt to get ext name from null fits file + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL fits file"); + if(psFitsGetExtNum(NULL) != PS_FITS_TYPE_NONE) { + psError(PS_ERR_UNKNOWN,true,"Expected NULL return from psFitsGetExtNum with NULL fits file"); + return 10; + } + + return 0; +} + +static psS32 tst_psFitsReadHeader( void ) +{ + if (! makeMulti() ) { + return 1; + } + + psFits* fits = psFitsOpen(multiFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + int numHDUs = psFitsGetSize(fits); + + if (numHDUs < 8) { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs."); + return 2; + } + + char extname[80]; + for (int hdunum = 0; hdunum < numHDUs; hdunum++) { + snprintf(extname,80,"ext-%d",hdunum); + + psFitsMoveExtNum(fits,hdunum,false); + + psMetadata* header = psFitsReadHeader(NULL,fits); + if (header == NULL) { + psError(PS_ERR_UNKNOWN, false, + "Failed to read header"); + return 3; + } + + psMetadata* header2 = psMetadataAlloc(); + header2 = psFitsReadHeader(header2,fits); + if (header2 == NULL) { + psError(PS_ERR_UNKNOWN, false, + "Failed to read header"); + return 11; + } + + if (header->list->n < 1 || header->list->n != header2->list->n) { + psError(PS_ERR_UNKNOWN, true, + "Reading the header given a NULL input psMetadata differed " + "from giving an existing psMetadata."); + return 12; + } + + // check for the extra metadata items + psS32 intItem = psMetadataLookupS32(NULL,header, "MYINT"); + psF32 fltItem = psMetadataLookupF32(NULL,header, "MYFLT"); + psF64 dblItem = psMetadataLookupF64(NULL,header, "MYDBL"); + psMetadataItem* boolItem = psMetadataLookup(header, "MYBOOL"); + psString strItem = psMetadataLookupStr(NULL, header, "MYSTR"); + + if (intItem != hdunum) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psS32 metadata item from file."); + return 20; + } + + if (fabsf(fltItem - 1.0f/(float)(1+hdunum)) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psF32 metadata item from file. Got %f vs %f", + fltItem,1.0f/(float)(1+hdunum)); + return 21; + } + + if (abs(dblItem - 1.0/(double)(1+hdunum)) > DBL_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psF64 metadata item from file. Got %g vs %g", + dblItem, 1.0/(double)(1+hdunum)); + return 22; + } + + if (boolItem == NULL || + boolItem->type != PS_DATA_BOOL) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psBool metadata item from file."); + return 23; + } + + if (strItem == NULL || strncmp(strItem,extname,strlen(extname)) != 0) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve string metadata item from file. Got '%s' vs '%s' (%d)", + strItem,extname,strlen(extname)); + return 24; + } + + psFree(header); + psFree(header2); + } + + psLogMsg(__func__,PS_LOG_INFO,"following should be an error (input psFits = NULL)"); + psMetadata* header = psFitsReadHeader(NULL,NULL); + + if (header != NULL || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, true, + "psFitsReadHeader didn't error on a NULL psFits."); + return 30; + } + + + psFree(fits); + + return 0; +} + +static psS32 tst_psFitsReadHeaderSet( void ) +{ + if (! makeMulti() ) { + return 1; + } + + psFits* fits = psFitsOpen(multiFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + int numHDUs = psFitsGetSize(fits); + + if (numHDUs < 8) { + psError(PS_ERR_UNKNOWN,true, + "The 'multi' FITS file does not have multiple HDUs."); + return 2; + } + + // move to the middle + psFitsMoveExtNum(fits,numHDUs/2, false); + + psMetadata* headerSet = psFitsReadHeaderSet(NULL,fits); + + if (headerSet == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeaderSet returned NULL unexpectedly."); + return 3; + } + + if (psFitsGetExtNum(fits) != numHDUs/2) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeaderSet changed the CHU."); + return 4; + } + + char extname[80]; + for (int i = 0; i < numHDUs; i++) { + if (i == 0) { + snprintf(extname, 80, "PHU"); + } else { + snprintf(extname, 80, "ext-%d", i); + } + + psMetadata* header = psMetadataLookupPtr(NULL,headerSet, extname); + + if (header == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeader returned NULL unexpectedly for HDU#%d.", + i); + return 5; + } + + psS32 intItem = psMetadataLookupS32(NULL, header, "MYINT"); + + if (intItem != i) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeader for HDU#%d had a MYINT of %d, expected %d.", + intItem, i); + return 6; + } + } + + psMetadata* set3 = psFitsReadHeaderSet(NULL,fits); + if (set3 == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeaderSet returned NULL unexpectedly."); + return 11; + } + + for (int i = 0; i < numHDUs; i++) { + if (i == 0) { + snprintf(extname, 80, "PHU"); + } else { + snprintf(extname, 80, "ext-%d", i); + } + + psMetadata* header = psMetadataLookupPtr(NULL, set3, extname); + + if (header == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeader returned NULL unexpectedly for HDU#%d.", + i); + return 5; + } + + psS32 intItem = psMetadataLookupS32(NULL, header, "MYINT"); + + if (intItem != i) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeader for HDU#%d had a MYINT of %d, expected %d.", + intItem, i); + return 6; + } + } + + set3 = psFitsReadHeaderSet(set3,NULL); + if (set3 != NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadHeaderSet returned non-NULL given a NULL psFits."); + return 10; + } + + psFree(headerSet); + + psFitsClose(fits); + + return 0; +} + +static psS32 tst_psFitsReadTable( void ) +{ + + + if (! makeTable()) { + return 111; + } + + psFits* fits = psFitsOpen(tableFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + psFitsMoveExtNum(fits,1,false); + + psArray* table = psFitsReadTable(fits); + + if (table == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTable returned NULL unexpectedly."); + return 2; + } + + if (table->n != tableNumRows) { + psError(PS_ERR_UNKNOWN, false, + "Expected %d rows, but read %d.", + tableNumRows, table->n); + return 3; + } + + + for (int row = 0; row < table->n; row++) { + psMetadata* rowData = table->data[row]; + + psS32 intItem = psMetadataLookupS32(NULL, rowData, "MYINT"); + psF32 fltItem = psMetadataLookupF32(NULL, rowData, "MYFLT"); + psF64 dblItem = psMetadataLookupF64(NULL, rowData, "MYDBL"); + psBool boolItem = psMetadataLookupBool(NULL, rowData, "MYBOOL"); + psString strItem = psMetadataLookupStr(NULL, rowData, "MYSTR"); + psVector* vecItem = psMetadataLookupPtr(NULL, rowData, "MYVEC"); + + if (intItem != row) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psS32 metadata item from file (row=%d). Got %d vs %d", + row, intItem, row); + return 20; + } + + if (fabsf(fltItem - 1.0f/(float)(1+row)) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psF32 metadata item from file (row=%d). Got %f vs %f", + row, fltItem,1.0f/(float)(1+row)); + return 21; + } + + if (abs(dblItem - 1.0/(double)(1+row)) > DBL_EPSILON) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psF64 metadata item from file (row=%d). Got %g vs %g", + row, dblItem, 1.0/(double)(1+row)); + return 22; + } + + if ( boolItem != ((row&0x01) == 0)) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psBool metadata item from file (row=%d). Got %d vs %d", + row, boolItem, ((row&0x01) == 0)); + return 23; + } + + char strValue[16]; + snprintf(strValue,16,"row=%d",row+1); + if ( strncmp(strItem,strValue,strlen(strValue)) != 0) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psString metadata item from file (row=%d). Got '%s' vs '%s'", + row, strItem, strValue); + return 24; + } + + if ( vecItem == NULL ) { + psError(PS_ERR_UNKNOWN, true, + "Failed to retrieve psVector metadata item from file (row=%d).", + row); + return 25; + } + + if ( vecItem->type.type != PS_DATA_S32 || + vecItem->data.S32[0] != row || + vecItem->data.S32[3] != row+30 ) { + psError(PS_ERR_UNKNOWN, true, + "Retrieved psVector (row=%d) didn't match expected values [%d,%d,%d,%d] vs [%d,%d,%d,%d].", + row,vecItem->data.S32[0], vecItem->data.S32[1], + vecItem->data.S32[2], vecItem->data.S32[3], + row,row+10,row+20,row+30); + return 26; + } + + } + + psFree(table); + psFree(fits); + + psArray* nullTest = psFitsReadTable(NULL); + + if (nullTest != NULL || psErrorGetStackSize() != 1) { + psError(PS_ERR_UNKNOWN, true, + "psFitsReadTable returned non-NULL when given NULL."); + return 30; + } + + return 0; +} + +static psS32 tst_psFitsReadTableColumnNum( void ) +{ + if (! makeTable()) { + return 111; + } + + psFits* fits = psFitsOpen(tableFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + psFitsMoveExtNum(fits,1,false); + + // read the column data via number + psVector* colData; + psElemType type[4] = {PS_TYPE_S32, PS_TYPE_F32, PS_TYPE_F32, PS_TYPE_BOOL}; + psElemType altType[4] = {PS_TYPE_S64, PS_TYPE_F64, PS_TYPE_F64, PS_TYPE_BOOL}; + char* colname[4] = {"MYINT","MYFLT","MYDBL","MYBOOL"}; + psF64 expectedValues[4][10] = { + {0,1,2,3,4,5,6,7,8,9}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0,1.0,0.0} + }; + + for (int col = 0; col < 4; col++) { + colData = psFitsReadTableColumnNum(fits,colname[col]); + if (colData == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum returned NULL for col=%d", + col); + return 2; + } + if (colData->type.type != type[col] && + colData->type.type != altType[col]) { + char* typeRead; + char* typeExpected; + PS_TYPE_NAME(typeRead, colData->type.type); + PS_TYPE_NAME(typeExpected, type[col]); + + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum returned different type, %s vs %s, for col=%d", + typeRead, typeExpected, col); + return 3; + } + if (colData->n != tableNumRows) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum returned different number of rows, %d vs %d, for col=%d", + colData->n, tableNumRows, col); + return 4; + } + for (int row = 0; row < tableNumRows; row++) { + if (abs(p_psVectorGetElementF64(colData,row) - expectedValues[col][row]) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum returned unexpected values (%g vs %g) for col=%d", + p_psVectorGetElementF64(colData,row), expectedValues[col][row], col); + return 5; + } + } + psFree(colData); + } + + psWarning("Following should be an error."); + psErrorClear(); + psVector* data = psFitsReadTableColumnNum(NULL,colname[0]); + psErr* err = psErrorLast(); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum did not return NULL with NULL psFits"); + return 6; + } + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum did not error with NULL psFits"); + return 7; + } + psFree(err); + + psWarning("Following should be an error."); + psErrorClear(); + data = psFitsReadTableColumnNum(fits,"BOGUS"); + err = psErrorLast(); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum did not return NULL with bogus column name."); + return 8; + } + if (err->code != PS_ERR_IO) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumnNum did not error with bogus column name."); + return 9; + } + psFree(err); + + psFree(fits); + + return 0; +} + +static psS32 tst_psFitsReadTableColumn( void ) +{ + if (! makeTable()) { + return 111; + } + + psFits* fits = psFitsOpen(tableFilename,"r"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 1; + } + + psFitsMoveExtNum(fits,1,false); + + // read the column data via number + psArray* colData; + char* colname[4] = {"MYINT","MYFLT","MYDBL","MYBOOL"}; + psF64 expectedValues[3][10] = { + {0,1,2,3,4,5,6,7,8,9}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0}, + {1.0,1.0/2.0,1.0/3.0,1.0/4.0,1.0/5.0,1.0/6.0,1.0/7.0,1.0/8.0,1.0/9.0} + }; + char* expectedBoolValues[10] = {"T","F","T","F","T","F","T","F","T","F"}; + char* expectedStrValues[10] = {"row=1","row=2","row=3","row=4","row=5","row=6","row=7","row=8","row=9","row=10"}; + + for (int col = 0; col < 4; col++) { + colData = psFitsReadTableColumn(fits,colname[col]); + if (colData == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn returned NULL for col=%d", + col); + return 2; + } + if (colData->n != tableNumRows) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn returned different number of rows, %d vs %d, for col=%d", + colData->n, tableNumRows, col); + return 4; + } + if (col < 3) { + for (int row = 0; row < tableNumRows; row++) { + if (abs(atof((char*)colData->data[row]) - expectedValues[col][row]) > 0.0001) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn returned unexpected values (%g vs %g) for col=%d", + atof((char*)colData->data[row]), expectedValues[col][row], col); + return 5; + } + } + } else if (col == 3) { + for (int row = 0; row < tableNumRows; row++) { + if (strncmp(colData->data[row],expectedBoolValues[row], + strlen(expectedBoolValues[row])) != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn returned unexpected values ('%s' vs '%s') for col=%d", + (char*)colData->data[row], expectedBoolValues[row], col); + return 5; + } + } + } else if (col == 4) { + for (int row = 0; row < tableNumRows; row++) { + if (strncmp(colData->data[row],expectedStrValues[row], + strlen(expectedStrValues[row])) != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn returned unexpected values ('%s' vs '%s') for col=%d", + (char*)colData->data[row], expectedStrValues[row], col); + return 5; + } + } + } + + psFree(colData); + } + + psWarning("Following should be an error."); + psErrorClear(); + psArray* data = psFitsReadTableColumn(NULL,"MYINT"); + psErr* err = psErrorLast(); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn did not return NULL with NULL psFits"); + return 6; + } + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn did not error with NULL psFits"); + return 7; + } + psFree(err); + + psWarning(__func__,"Following should be an error."); + psErrorClear(); + data = psFitsReadTableColumn(fits,"BOGUS"); + err = psErrorLast(); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn did not return NULL with col=\"BOGUS\""); + return 8; + } + if (err->code != PS_ERR_IO) { + psError(PS_ERR_UNKNOWN, false, + "psFitsReadTableColumn did not error with col=\"BOGUS\""); + return 9; + } + psFree(err); + + psFree(fits); + + return 0; +} + +static psS32 tst_psFitsUpdateTable( void ) +{ + psErr* err; + char* strValue[] = { + "row A", + "row B", + "row C", + "row D", + "row E", + "row F", + "row G", + "row H", + "row I", + "row J", + "row K" + }; + + + if (! makeTable()) { + return 111; + } + + psFits* fits = psFitsOpen(tableFilename,"rw"); + + if (fits == NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsOpen returned NULL on existing file."); + return 2; + } + + psFitsMoveExtNum(fits,1,false); + + // change the data in the file, going past by one (implicit new row of data) + for (int row = 0; row < tableNumRows+1; row++) { + psMetadata* md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"MYFLT", 0,"",(float)row/-10.0); + psMetadataAddF64(md,PS_LIST_TAIL,"MYDBL", 0,"",(double)row/-100.0); + psMetadataAddS32(md,PS_LIST_TAIL,"MYINT", 0,"",-row); + psMetadataAddBool(md,PS_LIST_TAIL,"MYBOOL", 0,"",((row & 1) == 1)); + psMetadataAddStr(md,PS_LIST_TAIL,"MYSTR", 0,"",strValue[row]); + + if (! psFitsUpdateTable(fits,md,row)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable returned false, but expected true for row=%d.", + row); + return 3; + } + psFree(md); + } + + for (int row = 0; row < tableNumRows+1; row++) { + psMetadata* md = psFitsReadTableRow(fits, row); + if (abs(psMetadataLookupF32(NULL,md,"MYFLT") - (float)row/-10.0) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not change the float value for row=%d.", + row); + return 4; + } + if (abs(psMetadataLookupF64(NULL,md,"MYDBL") - (float)row/-100.0) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not change the double value for row=%d.", + row); + return 5; + } + if (psMetadataLookupS32(NULL,md,"MYINT") != -row) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not change the integer value for row=%d.", + row); + return 6; + } + if (psMetadataLookupBool(NULL,md,"MYBOOL") != ((row &1) == 1)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not change the boolean value for row=%d.", + row); + return 7; + } + psString mystr = psMetadataLookupStr(NULL,md,"MYSTR"); + if (strncmp(mystr,strValue[row], + strlen(strValue[row])) != 0) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not change the string value for row=%d.", + row); + return 8; + } + psFree(md); + } + + psMetadata* md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"BOGUS", 0,"",-1.0f); + psWarning("Following should be a warning."); + psErrorClear(); + if (! psFitsUpdateTable(fits,md,0)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not return false with bogus column data"); + return 10; + } + psFree(md); + + md = psMetadataAlloc(); + psMetadataAddF32(md,PS_LIST_TAIL,"MYFLT", 0,"",-1.0f); + psMetadataAddF64(md,PS_LIST_TAIL,"MYDBL", 0,"",-2.0); + psMetadataAddS32(md,PS_LIST_TAIL,"MYINT", 0,"",-3); + + psWarning("Following should be an error."); + psErrorClear(); + if (psFitsUpdateTable(NULL,md,0)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not return false with NULL psFits"); + return 20; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not error with NULL psFits"); + return 21; + } + psFree(err); + + psWarning("Following should be an error."); + psErrorClear(); + if (psFitsUpdateTable(fits,NULL,0)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not return false with NULL psMetadata"); + return 22; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not error with NULL psMetadata"); + return 23; + } + psFree(err); + + psWarning("Following should be an error."); + psErrorClear(); + if (psFitsUpdateTable(fits,md,-1)) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not return false with row=-1"); + return 24; + } + err = psErrorLast(); + if (err->code != PS_ERR_IO) { + psError(PS_ERR_UNKNOWN, false, + "psFitsUpdateTable did not error with row=-1"); + return 25; + } + + psFree(err); + psFree(md); + psFitsClose(fits); + + return 0; +} + +psS32 testImageRead(void) +{ + psS32 N = 256; + psS32 M = 128; + + /* + This function shall open the specified FITS file, read the specified data + and place the data into a psImage structure. This function shall generate + an error message and return NULL if any of the input parameters are out of + range, image file doesn't exist or image is zero or one dimensional. + + Verify the returned psImage structure contains expected values, if the input + parameter filename specifies an available FITS file with known 2dimensional + data, input parameters col, row, ncol, nrow, z specify data range with the + FITS file. Cases should include 1x1, Nx1, 1xN, NxN and MxN sub images and + total FITS file image. (done in macro) + + Verify the returned psImage structure is equal to the input parameter + 'output', if specified. (done in macro) + + */ + + /* generate FITS file to read */ + + #define testReadTypeSize(m, n, readM0, readN0, readM, readN, TYP, filename) \ + { \ + psImage* img = NULL; \ + psImage* img2 = NULL; \ + psImage* img3 = NULL; \ + psImage* img4 = NULL; \ + /* psImagimge* img_ref = NULL; */ \ + \ + GENIMAGE(img,m,n,TYP,row+2*col); \ + img2 = psImageCopy(img2,img,PS_TYPE_##TYP); \ + GENIMAGE(img3,m,n,TYP,row+2*col); \ + psImageClip(img3,32.0,32.0,120.0,120.0); \ + img4 = psImageCopy(img4,img3,PS_TYPE_##TYP); \ + psFits* fits = psFitsOpen(filename, "w"); \ + if (! psFitsWriteImage(fits, NULL, img, 2, NULL)) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to write test image %s",filename); \ + return 1; \ + } \ + if (! psFitsUpdateImage(fits,img3, 0,0, 1)) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to write test image %s",filename); \ + return 2; \ + } \ + if (! psFitsWriteImage(fits,NULL, img3, 2, NULL)) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to write test image %s",filename); \ + return 3; \ + } \ + if (! psFitsUpdateImage(fits,img, 0, 0, 1)) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to write test image %s",filename); \ + return 4; \ + } \ + psFree(img); \ + psFree(fits); \ + img = NULL; \ + psFree(img3); \ + img3 = NULL; \ + fits = psFitsOpen(filename,"r"); \ + psRegion reg = {readM0, readM, readN0, readN}; \ + img = psFitsReadImage(fits, reg, 0); \ + img3 = psFitsReadImage(fits, reg, 1); \ + if (img3 == NULL) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to read test image %s",filename); \ + return 6; \ + } \ + for (psU32 row = readN0; row < readN; row++) { \ + ps##TYP* imgRow = img->data.TYP[row-readN0]; \ + ps##TYP* img2Row = img2->data.TYP[row]; \ + ps##TYP* img3Row = img3->data.TYP[row-readN0]; \ + ps##TYP* img4Row = img4->data.TYP[row]; \ + for (psU32 col = readM0; col < readM; col++) { \ + if (fabsf(imgRow[col-readM0]-img2Row[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Image changed in I/O operation at %d,%d,0 (%.2f vs %.2f) for %s", \ + col,row,(psF32)imgRow[col-readM0],(psF32)img2Row[col],filename); \ + return 7; \ + } \ + if (fabsf(img3Row[col-readM0]-img4Row[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Image changed in I/O operation at %d,%d,1 (%.2f vs %.2f) for %s", \ + col,row,(psF32)img3Row[col-readM0],(psF32)img4Row[col],filename); \ + return 8; \ + } \ + } \ + } \ + psFree(img); \ + img = NULL; \ + psFree(img3); \ + img3 = NULL; \ + psFitsMoveExtNum(fits,1, false); \ + img3 = psFitsReadImage(fits, reg, 0); \ + img = psFitsReadImage(fits, reg, 1); \ + if (img == NULL) { \ + psError(PS_ERR_UNKNOWN, true,"Failed to read test image %s",filename); \ + return 9; \ + } \ + for (psU32 row = readN0; row < readN; row++) { \ + ps##TYP* imgRow = img->data.TYP[row-readN0]; \ + ps##TYP* img2Row = img2->data.TYP[row]; \ + ps##TYP* img3Row = img3->data.TYP[row-readN0]; \ + ps##TYP* img4Row = img4->data.TYP[row]; \ + for (psU32 col = readM0; col < readM; col++) { \ + if (fabsf(imgRow[col-readM0]-img2Row[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Image changed in I/O operation at %d,%d,0 (%.2f vs %.2f) for %s", \ + col,row,(psF32)imgRow[col-readM0],(psF32)img2Row[col],filename); \ + return 10; \ + } \ + if (fabsf(img3Row[col-readM0]-img4Row[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Image changed in I/O operation at %d,%d,1 (%.2f vs %.2f) for %s", \ + col,row,(psF32)img3Row[col-readM0],(psF32)img4Row[col],filename); \ + return 11; \ + } \ + } \ + } \ + psFree(img); \ + psFree(img2); \ + psFree(img3); \ + psFree(img4); \ + psFree(fits); \ + } + + #define testReadType(TYP,filename) \ + testReadTypeSize(1,1,0,0,0,0,TYP,"tmpImages/1x1_" filename); \ + testReadTypeSize(M,1,M/4,0,M*3/4,0,TYP,"tmpImages/Mx1_" filename); \ + testReadTypeSize(1,N,0,N/4,0,N*3/4,TYP,"tmpImages/1xN_" filename); \ + testReadTypeSize(M,N,M/4,N/4,M*3/4,N*3/4,TYP,"tmpImages/MxN_" filename); + + mkdir("tmpImages",0777); + + testReadType(U8,"U8.fits"); + testReadType(S8,"S8.fits"); // Not a requirement + testReadType(S16,"S16.fits"); + testReadType(U16,"U16.fits"); // Not a requirement + testReadType(S32,"S32.fits"); + testReadType(U32,"U32.fits"); // Not a requirement + testReadType(F32,"F32.fits"); + testReadType(F64,"F64.fits"); + + // Attempt to read from NULL fits object + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL psFits"); + psRegion region = { + 0,0,0,0 + }; + if(psFitsReadImage(NULL,region,0) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL psFits"); + return 100; + } + + return 0; +} + +psS32 testImageWrite(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psS32 m = 64; + psS32 n = 96; + + /* + This function shall write the specified section within a psImage structure + to a FITS file. If the specifiedfile exists, then data should overwrite the + section to write. If the specified file doesn't exist, it shall be created. + If an extenstion is specified, then a basic primary header data unit shall + be created. + */ + + /* + Verify a FITS file named filename is generated and contains expected + values, if the input parameter input contains known data values, input + parameters col, row, ncol, nrow specify a valid data region within psImage + structure. + + Verify a FITS file named filename is generated and contains a primary + header data unit with extension with expected values, if the input + parameter input contains known data values, input parameters col, row, + ncol, nrow specify a valid data region within psImage structure and + extname and/or extnum specify an extenstion to write. + + N.B. : these are done in testImageRead tests, see above. + */ + + /* + Verify a FITS file named filename is overwritten and contains + expected values, if the input parameter input contains known data values, + input parameters col, row, ncol, nrow specify a valid data region within + psImage structure. + */ + + GENIMAGE(img,m,n,F32,0); + GENIMAGE(img2,m,n,F32,row+2*col); + mkdir("tmpImages",0777); + psFits* fits = psFitsOpen("tmpImages/writeTest.fits","w"); + + if (! psFitsWriteImage(fits, NULL, img,1, NULL)) { + psError(PS_ERR_UNKNOWN, true,"Couldn't write writeTest.fits."); + return 14; + } + if (! psFitsUpdateImage(fits, img2, 0, 0, 0)) { + psError(PS_ERR_UNKNOWN, true,"Couldn't update writeTest.fits."); + return 15; + } + psFree(img); + psFree(img2); + + // Did it really overwrite the pixel values? Let's read it in and see. + psFitsClose(fits); + + psRegion region = {0,0,0,0}; + fits = psFitsOpen("tmpImages/writeTest.fits","r"); + img = NULL; + img = psFitsReadImage(fits, region, 0); + if (img == NULL) { + psError(PS_ERR_UNKNOWN, true,"Could not read in writeTest.fits."); + return 16; + } + for (psU32 row=0;rowdata.F32[row]; + for (psU32 col=0;col FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"The image values were not overwritten at %d,%d (%.2f vs %.2f)", + col,row,imgRow[col],(row+2*col)); + return 17; + } + } + } + + psFree(img); + + /* + Verify false is returned and program execution is not stopped, if the input image + is null. + */ + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message because input image is null."); + if ( psFitsWriteImage(fits,NULL,NULL, 1, NULL) ) { + psError(PS_ERR_UNKNOWN, true,"psImageWriteSection did not return false when input image is NULL."); + return 20; + } + + psFree(fits); + + return 0; +} + +psS32 tst_psFitsWriteHeader(void) +{ + if (! makeMulti() ) { + return 1; + } + + psMetadata* header = psMetadataAlloc(); + psFits* fitsFile = psFitsOpen(multiFilename,"a+"); + + // Test psFitsReadWrite generates files from psFitsWriteImage which calls psFitsWriteHeader + // so these additional tests check for error conditions + // Attempt call function with NULL metadata + if(psFitsWriteHeader(fitsFile, NULL)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL metadata pointer"); + return 2; + } + + psFree(fitsFile); + + // Attempt to call function with NULL fits + if(psFitsWriteHeader(NULL, header)) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return of true for NULL fits file pointer"); + return 3; + } + psFree(header); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/fits/verified/fBiOut.fits =================================================================== --- /branches/rel-1-1/psLib/test/fits/verified/fBiOut.fits (revision 12167) +++ 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþXTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿ‚ÿƒÿ„ÿ +ÿ†ÿ‡ÿˆÿ‰ÿŠÿ‹ÿŒÿÿŽÿÿÿ‘ÿ’ÿ“ÿ”ÿ•ÿ–ÿ—ÿ˜ÿ™ÿšÿ›ÿœÿÿžÿŸÿ ÿ¡ÿ¢ÿ£ÿ€ÿ¥ÿŠÿ§ÿšÿ©ÿªÿ«ÿ¬ÿ­ÿ®ÿ¯ÿ°ÿ±ÿ²ÿ³ÿŽÿµÿ¶ÿ·ÿžÿ¹ÿºÿ»ÿŒÿœÿŸÿ¿ÿÀÿÁÿ„ÿ 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!"#$%&'()*+,-./0123456789:;<= + + + + + + + !"#$%&'()*+,-./0123456789:;<=>?XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿƒÿƒÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ +ÿ„ÿƒÿ„ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿˆÿ‡ÿ†ÿ +ÿ +ÿ 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿ‚ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ +ÿƒÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ 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ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿûÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿùÿøÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿýÿûÿùÿ÷ÿõÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿúÿøÿöÿôÿòÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿùÿ÷ÿõÿóÿñÿïÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ 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ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿì)('&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿê'&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿè%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæ#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿä!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâ + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿà + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØÿ×ÿÖ + + + + 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+ÿ„ÿÁÿÀÿ¿ÿŸÿœÿŒÿ»ÿºÿ¹ÿžÿ·ÿ¶ÿµÿŽÿ³ÿ²ÿ±ÿ°ÿ¯ÿ®ÿ­ÿ¬ÿ«ÿªÿ©ÿšÿ§ÿŠÿ¥ÿ€ÿ£ÿ¢ÿ¡ÿ ÿŸÿžÿÿœÿ›ÿšÿ™ÿ˜ÿ—ÿ–ÿ•ÿ”ÿ“ÿ’ÿ‘ÿÿÿŽÿÿŒÿ‹ÿŠÿ‰ÿˆÿ‡ÿ†ÿ +ÿ„ÿƒÿ‚XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþXTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿ‚ÿƒÿ„ÿ +ÿ†ÿ‡ÿˆÿ‰ÿŠÿ‹ÿŒÿÿŽÿÿÿ‘ÿ’ÿ“ÿ”ÿ•ÿ–ÿ—ÿ˜ÿ™ÿšÿ›ÿœÿÿžÿŸÿ ÿ¡ÿ¢ÿ£ÿ€ÿ¥ÿŠÿ§ÿšÿ©ÿªÿ«ÿ¬ÿ­ÿ®ÿ¯ÿ°ÿ±ÿ²ÿ³ÿŽÿµÿ¶ÿ·ÿžÿ¹ÿºÿ»ÿŒÿœÿŸÿ¿ÿÀÿÁÿ„ÿ 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!"#$%&'()*+,-./0123456789:;<= + + + + + + + !"#$%&'()*+,-./0123456789:;<=>?XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ„ÿƒÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ†ÿ +ÿ 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿ‚ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ +ÿƒÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ 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ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿì)('&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿê'&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿè%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæ#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿä!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâ + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿà + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØÿ×ÿÖ + + + + 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+ÿ„ÿÁÿÀÿ¿ÿŸÿœÿŒÿ»ÿºÿ¹ÿžÿ·ÿ¶ÿµÿŽÿ³ÿ²ÿ±ÿ°ÿ¯ÿ®ÿ­ÿ¬ÿ«ÿªÿ©ÿšÿ§ÿŠÿ¥ÿ€ÿ£ÿ¢ÿ¡ÿ ÿŸÿžÿÿœÿ›ÿšÿ™ÿ˜ÿ—ÿ–ÿ•ÿ”ÿ“ÿ’ÿ‘ÿÿÿŽÿÿŒÿ‹ÿŠÿ‰ÿˆÿ‡ÿ†ÿ +ÿ„ÿƒÿ‚XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþ Index: /branches/rel-1-1/psLib/test/imageops/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/imageops/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/.cvsignore (revision 12167) @@ -0,0 +1,27 @@ +temp +.deps +.libs +Makefile +Makefile.in +tst_psImageConvolve +tst_psImageGeomManip +tst_psImageInterpolate +tst_psImagePixelExtract +tst_psImagePixelManip +tst_psImageStats +tst_psImageStructManip +fBiOut.fits +fOut.fits +sBiOut.fits +sOut.fits +tst_psImageMaskOps +tst_psImageSmooth +*.bb +*.bbg +*.da +gmon.out +tap_psImageShift +tap_psImageShiftKernel +tap_psImageConvolve +tap_psImageConvolve2 +convolutionBench Index: /branches/rel-1-1/psLib/test/imageops/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/imageops/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/Makefile.am (revision 12167) @@ -0,0 +1,36 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psImageShift \ + tap_psImageShiftKernel \ + tap_psImageGeomManip \ + tap_psImageInterpolate \ + tap_psImagePixelManip \ + tap_psImageSmooth \ + tap_psImageStructManip \ + tap_psImageConvolve \ + tap_psImageConvolve2 \ + tap_psImagePixelExtract + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* fOut.fits sOut.fits fBiOut.fits sBiOut.fits \ + core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/imageops/convolutionBench.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/convolutionBench.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/convolutionBench.c (revision 12167) @@ -0,0 +1,95 @@ +#include +#include + +// Generate image with single high pixel +static psImage *generateImage(int numCols, int numRows, psRandom *rng) +{ + psImage *image = psImageAlloc(numCols, numRows, PS_TYPE_F32); + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + image->data.F32[y][x] = psRandomGaussian(rng); + } + } + return image; +} + + +static psKernel *generateKernel(int numCols, int numRows) +{ + psKernel *kernel = psKernelAlloc(-numCols, numCols, -numRows, numRows); + for (int y = -numRows; y <= numRows; y++) { + for (int x = -numCols; x <= numCols; x++) { + kernel->kernel[y][x] = psGaussian(sqrtf((float)(x*x + y*y)), 0.0, + (float)PS_MIN(numCols, numRows) / 3.0, true); + } + } + return kernel; +} + +static void runBench(int imageCols, int imageRows, int kernelCols, int kernelRows, int iter, psRandom *rng) +{ + double direct = 0.0, fft = 0.0; // Sum of elapsed times for the two methods + for (int i = 0; i < iter; i++) { + { + psImage *image = generateImage(imageCols, imageRows, rng); + psKernel *kernel = generateKernel(kernelCols, kernelRows); + psTimerStart("direct"); + psImage *convolved = psImageConvolveDirect(NULL, image, kernel); + direct += psTimerMark("direct"); + psFree(convolved); + psFree(kernel); + psFree(image); + psTimerClear("direct"); + } + + { + psImage *image = generateImage(imageCols, imageRows, rng); + psKernel *kernel = generateKernel(kernelCols, kernelRows); + psTimerStart("fft"); + psImage *convolved = psImageConvolveFFT(NULL, image, kernel, 0.0); + fft += psTimerMark("fft"); + psFree(convolved); + psFree(kernel); + psFree(image); + psTimerClear("fft"); + } + } + + char size[16]; + sprintf(size, "%dx%d", imageCols, imageRows); + printf("%15s", size); + sprintf(size, "%dx%d", 2*kernelCols+1, 2*kernelRows+1); + printf(" %15s", size); + printf(" %8f %8f\n", direct / iter, fft / iter); +} + + + +int main(int argc, char *argv[]) +{ + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 0); // Random number generator + + printf("#%14s%16s %8s %8s\n", "Image", "Kernel", "Direct", "FFT"); + runBench( 100, 100, 3, 3, 10, rng); + runBench( 200, 200, 3, 3, 10, rng); + runBench( 400, 400, 3, 3, 10, rng); + runBench( 600, 600, 3, 3, 10, rng); + runBench( 800, 800, 3, 3, 8, rng); + runBench(1000, 1000, 3, 3, 6, rng); + runBench(2000, 2000, 3, 3, 4, rng); + runBench(4000, 4000, 3, 3, 2, rng); + + runBench(600, 600, 1, 1, 10, rng); + runBench(600, 600, 2, 2, 10, rng); + runBench(600, 600, 3, 3, 10, rng); + runBench(600, 600, 4, 4, 10, rng); + runBench(600, 600, 6, 6, 8, rng); + runBench(600, 600, 8, 8, 4, rng); + runBench(600, 600, 10, 10, 2, rng); + runBench(600, 600, 15, 15, 2, rng); + + psFree(rng); + psTimerStop(); + + return EXIT_SUCCESS; +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve.c (revision 12167) @@ -0,0 +1,388 @@ +/** @file tst_psImageConvolve.c + * + * @brief Contains the tests for psImageConvolve.[ch] + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 23:56:12 $ + * + * XXX: Must test the tRelative parameter to psKernelGenerate() + * XXX: Must test psImageConvolveFFT() + * XXX: Make sure psImageConvolveDirect() is correct. + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +bool testKernelAlloc(psS32 xMin, psS32 xMax, psS32 yMin, psS32 yMax) +{ + { + psMemId id = psMemGetId(); + psKernel *k = psKernelAlloc(xMin, xMax, yMin, yMax); + ok(k != NULL, "psKernelAlloc returned non-NULL for [%d:%d,%d:%d]", + xMin, xMax, yMin, yMax); + skip_start(k == NULL, 2, "Skipping tests because psKernelAlloc() returned NULL"); + ok(k->xMin == xMin && k->xMax == xMax && + k->yMin == yMin && k->yMax == yMax, "Min/max members, [%d:%d,%d:%d]. Should be [%d:%d,%d:%d]", + k->xMin,k->xMax, k->yMin, k->yMax, + xMin, xMax, yMin, yMax); + + ok(k->image->numCols == xMax-xMin+1 && k->image->numRows == yMax-yMin+1, + "Size of the kernel image (%dx%d vs %dx%d)", + xMax-xMin+1, yMax-yMin+1, k->image->numCols, k->image->numRows); + + bool errorFlag = false; + for (psS32 j=yMin; jkernel[j]+xMin != k->image->data.PS_TYPE_KERNEL_DATA[j-yMin]) { + diag("ERROR: The kernel pointer was set wrong for row %d", j); + errorFlag = true; + } + } + ok(!errorFlag, "psKernelAlloc() produced the correct data values"); + skip_end(); + psFree(k); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Following should be a warning (xMin > xMax) + { + psMemId id = psMemGetId(); + psKernel *k = psKernelAlloc(5, -5, -2, 2); + ok(k != NULL, "psKernelAlloc returned non-NULL with xMin > xMax"); + skip_start(k == NULL, 1, "Skipping tests because psKernelAlloc() returned NULL"); + ok(k->xMin == -5 && k->xMax == 5, "psKernelAlloc did swap xMin & xMax"); + skip_end(); + psFree(k); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Following should be a warning (yMin > yMax) + { + psMemId id = psMemGetId(); + psKernel *k = psKernelAlloc(-2, 2, 5, -5); + ok(k != NULL, "psKernelAlloc returned non-NULL with yMin > yMax"); + skip_start(k == NULL, 1, "Skipping tests because psKernelAlloc() returned NULL"); + ok(k->yMin == -5 && k->yMax == 5, "psKernelAlloc did swap yMin & yMax"); + skip_end(); + psFree(k); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return(true); +} + +bool testKernelGenerate(void) +{ + psS32 size = 5; + psS32 t[] = { 1, 2, 8, 9, 10 }; + psS32 x[] = { 0, 1, 0, -1, 0 }; + psS32 y[] = { 2, 1, -1, -2, 0 }; + float sum; + + { + psMemId id = psMemGetId(); + psVector* xVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* yVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* tVec = psVectorAlloc(size,PS_TYPE_U32); + + for (psS32 i = 0; i < size; i++) { + xVec->data.U32[i] = x[i]; + yVec->data.U32[i] = y[i]; + tVec->data.U32[i] = t[i]; + } + + psKernel* result = psKernelGenerate(tVec, xVec, yVec, false, false); + ok(result != NULL, "psKernelGenerate() returned non-NULL"); + skip_start(result == NULL, 3, "Skipping tests because psKernelGenerate() returned NULL"); + ok(result->xMin == -1 && result->xMax == 1 && + result->yMin == -2 && result->yMax == 2, + "psKernelGenerate result had a range of [%d:%d,%d:%d]. Suppose to be [-2:2,-1:1]", + result->xMin, result->xMax, result->yMin, result->yMax); + + sum = 0.0; + printf("Resulting kernel:\n"); + for (psS32 y = result->yMin; y <= result->yMax; y++) { + for (psS32 x = result->xMin; x <= result->xMax; x++) { + printf(" %6.2f ", result->kernel[y][x]); + sum += result->kernel[y][x]; + } + printf("\n"); + } + ok(fabsf(1.0 - sum) <= FLT_EPSILON, "psKernelGenerate result is normalized (sum=%g)", sum); + + ok(fabsf(result->kernel[-2][0] - 0.1) <= FLT_EPSILON && + fabsf(result->kernel[ -1][ -1] - 0.1) <= FLT_EPSILON && + fabsf(result->kernel[ 1][ 0] - 0.6) <= FLT_EPSILON && + fabsf(result->kernel[2][1] - 0.1) <= FLT_EPSILON, + "psKernelGenerate result values, %g,%g,%g,%g. Suppose to be 0.1,0.1,0.6,0.1", + result->kernel[-2][0], result->kernel[-1][-1], + result->kernel[1][0], result->kernel[2][1]); + skip_end(); + psFree(result); + psFree(xVec); + psFree(yVec); + psFree(tVec); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + ok(false, "XXXX: Skipping this psKernelGenerate() because of bugs"); + if (0) { + psMemId id = psMemGetId(); + psVector* xVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* yVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* tVec = psVectorAlloc(size,PS_TYPE_U32); + + for (psS32 i = 0; i < size; i++) { + xVec->data.S16[i] = x[i]; + yVec->data.S16[i] = y[i]; + tVec->data.S16[i] = t[i]; + } + + psKernel *result = psKernelGenerate(tVec, xVec, yVec, false, true); + ok(result != NULL, "psKernelGenerate() returned non-NULL"); + skip_start(result == NULL, 3, "Skipping tests because psKernelGenerate() returned NULL"); + ok (result->xMin == 0 && result->xMax == 1 && + result->yMin == 0 && result->yMax == 3, + "psKernelGenerate result had a range of [%d:%d,%d:%d]. Suppose to be [0:1,1:2]", + result->xMin, result->xMax, result->yMin, result->yMax); + + // XXXX: The bug surfaces here + sum = 0.0; + if (1) { + printf("Resulting kernel (relative=true) (%u - %u) (%u - %u):\n", + result->yMin, result->yMax, result->xMin, result->xMax); + for (psS32 y = result->yMin; y <= result->yMax; y++) { + printf("HERE y is %d\n", y); + for (psS32 x = result->xMin; x <= result->xMax; x++) { + printf(" %6.2f ", result->kernel[y][x]); + sum += result->kernel[y][x]; + } + printf("\n"); + } + } + ok(fabsf(1.0 - sum) <= FLT_EPSILON, "psKernelGenerate result is normalized (sum=%g)", sum); + + ok(fabsf(result->kernel[0][0] - 19.0/30.0) <= FLT_EPSILON && + fabsf(result->kernel[2][0] - 1.0/30.0) <= FLT_EPSILON && + fabsf(result->kernel[2][1] - 8.0/30.0) <= FLT_EPSILON && + fabsf(result->kernel[3][1] - 2.0/30.0) <= FLT_EPSILON, + "psKernelGenerate result values, %g,%g;%g,%g. Suppose to be 2,6;1,0", + result->kernel[0][0], result->kernel[2][0], + result->kernel[2][1], result->kernel[3][1]); + skip_end(); + psFree(result); + psFree(xVec); + psFree(yVec); + psFree(tVec); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Following should be an error + if (1) { + psMemId id = psMemGetId(); + psVector* xVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* yVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* tVec = psVectorAlloc(size,PS_TYPE_U32); + + for (psS32 i = 0; i < size; i++) { + psVectorSet(xVec, i, x[i]+0.1); + yVec->data.F32[i] = y[i]+0.2; + tVec->data.F32[i] = t[i]+0.3; + } + + tVec->n--; // decrease size by one to make vectors unequal in length. + psKernel *result = psKernelGenerate(tVec, xVec, yVec, false, false); + ok(result == NULL, "psKernelGenerate returned NULL given differing sized vectors"); + psFree(result); + psFree(xVec); + psFree(yVec); + psFree(tVec); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + psVector* xVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* yVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* tVec = psVectorAlloc(size,PS_TYPE_U32); + // Following should be a error (time vector NULL) + { + psMemId id = psMemGetId(); + psKernel *result = psKernelGenerate(NULL, xVec, yVec, false, true); + ok(result == NULL, "psKernelGenerate returned NULL with no time vector"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Following should be a error (x vector NULL) + { + psMemId id = psMemGetId(); + psKernel *result = psKernelGenerate(tVec, NULL, yVec, false, true); + ok(result == NULL, "psKernelGenerate returned NULL with no x vector"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Following should be a error (y vector NULL + { + psMemId id = psMemGetId(); + psKernel *result = psKernelGenerate(tVec, xVec, NULL, false, true); + ok(result == NULL, "psKernelGenerate returned NULL with no y vector"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(xVec); + psFree(yVec); + psFree(tVec); + return(true); +} + + +bool testImageConvolve(void) +{ + psMemId id = psMemGetId(); + const psS32 r = 200; + const psS32 c = 300; + psS32 sum; + + // approximate a normalized gaussian kernel. + psKernel* g = psKernelAlloc(-1,1,-1,1); + g->kernel[-1][-1] = g->kernel[-1][1] = g->kernel[1][-1] = g->kernel[1][1] = 0.0113; + g->kernel[1][0] = g->kernel[-1][0] = g->kernel[0][-1] = g->kernel[0][1] = 0.0838; + g->kernel[0][0] = 0.6193; + + // create a normalized non-symetric kernel. + psKernel* nsk = psKernelAlloc(0,2,0,2); + sum = 0.0; + for (psS32 i=0;i<2;i++) { + for (psS32 j=0;j<2;j++) { + nsk->kernel[i][j] = i+j; + sum = i+j; + } + } + for (psS32 i=0;i<2;i++) { + for (psS32 j=0;j<2;j++) { + nsk->kernel[i][j] /= sum; + } + } + + + psImage* img = psImageAlloc(c,r,PS_TYPE_F32); + memset(img->data.F32[0],0,c*r*PSELEMTYPE_SIZEOF(PS_TYPE_F32)); + img->data.F32[0][0] = 1.0f; + img->data.F32[r/2][c/2] = 1.0f; + img->data.F32[r-1][c/2] = 1.0f; + + // test spacial convolution of gaussian + ok(false, "XXXX: Skipping this psImageConvolve() because of bugs"); + if (0) { + psMemId id = psMemGetId(); + psImage* out = psImageConvolveDirect(NULL, img, g); + ok(out != NULL, "psImageConvolveDirect() returned non-NULL"); + skip_start(out == NULL, 3, "Skipping tests because psImageConvolveDirect() returned NULL"); + ok(out->numCols == c && out->numRows == r, + "psImageConvolveDirect result image is %dx%d, expected %dx%d", + out->numCols, out->numRows, c,r); + ok(out->type.type == PS_TYPE_F32, "psImageConvolveDirect() produced the correct type"); + + // test values + bool errorFlag = false; + for (psS32 i=-1;i<1;i++) { + for (psS32 j=-1;j<1;j++) { + if (fabsf(out->data.F32[r/2+i][c/2+j] - g->kernel[i][j]) > 0.0001) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + c/2+j,r/2+i, out->data.F32[r/2+i][c/2+j], g->kernel[i][j]); + errorFlag = true; + } + if (i >= 0 && j >= 0 && fabsf(out->data.F32[i][j] - g->kernel[i][j]) > 0.0001) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + j, i, out->data.F32[i][j], g->kernel[i][j]); + errorFlag = true; + } + if (i <= 0 && fabsf(out->data.F32[r-1+i][c/2+j] - g->kernel[i][j]) > 0.0001) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + c/2+j,r-1+i, out->data.F32[r-1+i][c/2+j], g->kernel[i][j]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psKernelGenerate() produced the correct data values"); + skip_end(); + psFree(out); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test fourier convolution of gaussian + ok(false, "XXXX: Skipping this psImageConvolveDirect() because of bugs"); + if (0) { + psMemId id = psMemGetId(); + psImage* out = psImageConvolveDirect(NULL, img, g); + psImage* out2 = psImageConvolveDirect(out, img, g); + + ok(out != NULL, "psImageConvolveDirect() returned non-NULL"); + ok(out2 != NULL, "psImageConvolveDirect() returned non-NULL"); + skip_start(out == NULL || out2 == NULL, 3, "Skipping tests because psImageConvolveDirect() returned NULL"); + ok(out == out2, "psImageConvolveDirect did recycle the supplied out image struct"); + ok(out->numCols == c && out->numRows == r, + "psImageConvolveDirect result image is %dx%d, expected %dx%d", + out->numCols, out->numRows, c,r); + ok(out->type.type == PS_TYPE_F32, "psImageConvolveDirect() produced the correct type"); + + // test values + bool errorFlag = false; + for (psS32 i=-1;i<1;i++) { + for (psS32 j=-1;j<1;j++) { + if (fabsf(out->data.F32[r/2+i][c/2+j] - g->kernel[i][j]) > 0.01) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + c/2+j,r/2+i, out->data.F32[r/2+i][c/2+j], g->kernel[i][j]); + errorFlag = true; + } + if (i >= 0 && j >= 0 && fabsf(out->data.F32[i][j] - g->kernel[i][j]) > 0.01) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + j,i, out->data.F32[i][j], g->kernel[i][j]); + errorFlag = true; + } + if (i <= 0 && fabsf(out->data.F32[r-1+i][c/2+j] - g->kernel[i][j]) > 0.01) { + diag("Convolved image wrong at %d,%d. Value is %g, expected %g", + c/2+j,r-1+i, out->data.F32[r-1+i][c/2+j], g->kernel[i][j]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psKernelGenerate() produced the correct data values"); + skip_end(); + psFree(out); + psFree(out2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(g); + psFree(img); + psFree(nsk); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(true); +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(62); + + testKernelAlloc(-5, 0, -4, 0); + testKernelAlloc(0, 5, 0, 4); + testKernelAlloc(-10, -5, -8, -4); + testKernelAlloc(5, 10, 4, 8); + testKernelGenerate(); + testImageConvolve(); +} + Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve2.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve2.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageConvolve2.c (revision 12167) @@ -0,0 +1,114 @@ +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define IMAGE_SIZE 21 +#define KERNEL_SIZE 3 +#define TOL 1.0e-6 + + +// Generate image with single high pixel +static psImage *generateImage(void) +{ + psImage *image = psImageAlloc(IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32); + psImageInit(image, 0.0); + image->data.F32[IMAGE_SIZE/2][IMAGE_SIZE/2] = 1.0; + return image; +} + +// Generate Gaussian kernel +static psKernel *generateKernel(void) +{ + psKernel *kernel = psKernelAlloc(- KERNEL_SIZE, KERNEL_SIZE, - KERNEL_SIZE, KERNEL_SIZE); + for (int y = - KERNEL_SIZE; y <= KERNEL_SIZE; y++) { + for (int x = - KERNEL_SIZE; x <= KERNEL_SIZE; x++) { + kernel->kernel[y][x] = exp(- x*x - y*y); + } + } + return kernel; +} + +// Check the convolved image matches the kernel +static bool checkConvolved(const psImage *image, const psKernel *kernel) +{ + bool correct = true; + for (int y = 0; y < IMAGE_SIZE; y++) { + for (int x = 0; x < IMAGE_SIZE; x++) { + if (x < IMAGE_SIZE/2 - KERNEL_SIZE || x > IMAGE_SIZE/2 + KERNEL_SIZE || + y < IMAGE_SIZE/2 - KERNEL_SIZE || y > IMAGE_SIZE/2 + KERNEL_SIZE) { + if (fabs(image->data.F32[y][x]) > TOL) { + diag("%d,%d --> %f", x, y, fabs(image->data.F32[y][x])); + correct = false; + } + } else { + // Position relative to the centre + int kx = x - IMAGE_SIZE/2; + int ky = y - IMAGE_SIZE/2; + if (fabs(image->data.F32[y][x] - kernel->kernel[ky][kx]) > TOL) { + diag("%d,%d --> %f", x, y, fabs(image->data.F32[y][x] - kernel->kernel[ky][kx])); + correct = false; + } + } + } + } + return correct; +} + + +int main(int argc, char *argv[]) +{ + plan_tests(10); + + diag("psImageConvolve tests"); + + { + // Direct convolution: 5 tests + psMemId id = psMemGetId(); + + psImage *image = generateImage(); + psKernel *kernel = generateKernel(); + + psImage *convolved = psImageConvolveDirect(NULL, image, kernel); + ok(convolved, "convolution result"); + skip_start(!convolved, 3, "convolution failed"); + ok(convolved->type.type == PS_TYPE_F32, "output type"); + ok(convolved->numCols == IMAGE_SIZE && convolved->numRows == IMAGE_SIZE, "output size %dx%d", + convolved->numCols, convolved->numRows); + ok(checkConvolved(convolved, kernel), "convolved image correct"); + psFree(convolved); + skip_end(); + + psFree(kernel); + psFree(image); + + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + { + // FFT convolution: 5 tests + psMemId id = psMemGetId(); + + psImage *image = generateImage(); + psKernel *kernel = generateKernel(); + + psImage *convolved = psImageConvolveFFT(NULL, image, kernel, 0.0); + ok(convolved, "convolution result"); + skip_start(!convolved, 3, "convolution failed"); + ok(convolved->type.type == PS_TYPE_F32, "output type"); + ok(convolved->numCols == IMAGE_SIZE && convolved->numRows == IMAGE_SIZE, "output size %dx%d", + convolved->numCols, convolved->numRows); + ok(checkConvolved(convolved, kernel), "convolved image correct"); + psFree(convolved); + skip_end(); + + psFree(kernel); + psFree(image); + + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); + } + + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageGeomManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageGeomManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageGeomManip.c (revision 12167) @@ -0,0 +1,1001 @@ +/** @file tst_psImageGeomManip.c + * + * @brief Contains the tests for psImageManip.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-30 00:13:01 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + + +bool testImageShiftCase(psS32 cols, + psS32 rows, + float colShift, + float rowShift) +{ + psImage *fOut = NULL; + psImage *sOut = NULL; + psImage *fImg = psImageAlloc(cols,rows,PS_TYPE_F32); + psImage *sImg = psImageAlloc(cols,rows,PS_TYPE_S16); + psImage *fBiOut = psImageAlloc(cols,rows,PS_TYPE_F32); + psImage *sBiOut = psImageAlloc(cols,rows,PS_TYPE_S16); + bool errorFlag = false; + + for(psS32 row=0;rowdata.F32[row]; + psS16 *sRow = sImg->data.S16[row]; + for (psS32 col=0;coldata.F32[row]; + psS16 *sRow = sOut->data.S16[row]; + psF32 *fBiRow = fBiOut->data.F32[row]; + psS16 *sBiRow = sBiOut->data.S16[row]; + + for (psS32 col=0;col FLT_EPSILON) { + diag("Float image not shifted correctly at %d,%d (%g vs %g)", + col,row,fRow[col],fValue); + errorFlag = true; + } + if (sRow[col] != sValue) { + diag("Short image not shifted correctly at %d,%d (%d vs %d)", + col,row,sRow[col],sValue); + errorFlag = true; + } + if (fabsf(fBiRow[col] - fBiValue) > FLT_EPSILON) { + diag("Float image not shifted correctly at %d,%d (%g vs %g)", + col,row,fBiRow[col],fBiValue); + errorFlag = true; + } + if (sBiRow[col] != sBiValue) { + diag("Short image not shifted correctly at %d,%d (%d vs %d)", + col,row,sBiRow[col],sBiValue); + errorFlag = true; + } + } + } + + psFree(fImg); + psFree(sImg); + psFree(fOut); + psFree(sOut); + psFree(fBiOut); + psFree(sBiOut); + + return !errorFlag; +} + + +psS32 main(psS32 argc, char *argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(178); + + // testImageRebin() + // This function shall generate a rescaled version of a psImage structure + // derived from a specified statistics method. + { + psMemId id = psMemGetId(); + psImage *in = NULL; + psImage *out = NULL; + psImage *out2 = NULL; + psImage *out3 = NULL; + psImage *mask = NULL; + psImage *meanTruth = NULL; + psImage *meanTruthWMask = NULL; + psImage *maxTruth = NULL; + psStats stats; + + // Verify the returned psImage structure contains expected values, if the + // input parameter input contains known data, the input scale is a known + // value with a known statistical method specified in stats. Cases should + // include at least two different scales and statistical methods. Comparison + // of expected values should include a delta to allow testing on different + // platforms. + #define testRebinType(DATATYPE) \ + { \ + psMemId id = psMemGetId();\ + in = psImageAlloc(16,16,PS_TYPE_##DATATYPE); \ + mask = psImageAlloc(16,16,PS_TYPE_U8); \ + meanTruth = psImageAlloc(4,4,PS_TYPE_F32); \ + meanTruthWMask = psImageAlloc(4,4,PS_TYPE_F32); \ + maxTruth = psImageAlloc(6,6,PS_TYPE_F32); \ + memset(meanTruth->data.F32[0],0,sizeof(psF32)*4*4); \ + memset(meanTruthWMask->data.F32[0],0,sizeof(psF32)*4*4); \ + memset(maxTruth->data.F32[0],0,sizeof(psF32)*6*6); \ + for (psS32 row = 0; row<16; row++) { \ + ps##DATATYPE *inRow = in->data.DATATYPE[row]; \ + psF32 *meanTruthRow = meanTruth->data.F32[row/4]; \ + psF32 *meanTruthWMaskRow = meanTruthWMask->data.F32[row/4]; \ + psF32 *maxTruthRow = maxTruth->data.F32[row/3]; \ + psU8 *maskRow = mask->data.U8[row]; \ + for (psS32 col = 0; col<16; col++) { \ + if(col != 15) { \ + maskRow[col] = 0; \ + } else { \ + maskRow[col] = 1; \ + } \ + inRow[col] = row + col; \ + meanTruthRow[col/4] += row + col; \ + if (maxTruthRow[col/3] < row + col) { \ + maxTruthRow[col/3] = row+col; \ + } \ + if(maskRow[col] == 0 ) { \ + meanTruthWMaskRow[col/4] += row + col; \ + } \ + } \ + } \ + for (psS32 row = 0; row<4; row++) { \ + psF32 *meanTruthRow = meanTruth->data.F32[row]; \ + psF32 *meanTruthWMaskRow = meanTruthWMask->data.F32[row]; \ + for (psS32 col = 0; col<4; col++) { \ + meanTruthRow[col] /= 16; \ + if ( col == 3 ) { \ + meanTruthWMaskRow[col] /= 12; \ + } else { \ + meanTruthWMaskRow[col] /= 16; \ + } \ + } \ + } \ + stats.options = PS_STAT_SAMPLE_MEAN; \ + ok(false, "XXXX: Skipping test because of a known seg fault"); \ + if (0) { \ + out = psImageRebin(NULL,in,NULL,0,4,&stats); \ + ok(out != NULL, "psImageRebin returned non-NULL"); \ + ok(out->numRows == 4 && out->numCols == 4, \ + "psImageRebin did produce the proper size image"); \ + bool errorFlag = false; \ + for (psS32 row = 0; row<4; row++) { \ + ps##DATATYPE *outRow = out->data.DATATYPE[row]; \ + psF32 *truthRow = meanTruth->data.F32[row]; \ + for (psS32 col = 0; col<4; col++) { \ + if (fabsf((float)outRow[col]-(float)truthRow[col]) > FLT_EPSILON) { \ + diag("psImageRebin didn't produce the proper mean " \ + "result at (%d,%d) [%f vs %f]", \ + col,row,outRow[col],truthRow[col]); \ + errorFlag = true;\ + } \ + } \ + } \ + ok(!errorFlag, "psImageRebin() produced the correct data"); \ + } \ + ok(false, "XXXX: Skipping test because of a known seg fault"); \ + if (0) { \ + stats.options = PS_STAT_SAMPLE_MEAN; \ + out3 = psImageRebin(NULL,in,mask,1,4,&stats); \ + bool errorFlag = false; \ + for (psS32 row = 0; row<4; row++) { \ + ps##DATATYPE *outRow = out3->data.DATATYPE[row]; \ + psF32 *truthRow = meanTruthWMask->data.F32[row]; \ + for ( psS32 col = 0; col<4; col++) { \ + if(abs((psS32)outRow[col]-(psS32)truthRow[col]) > FLT_EPSILON) { \ + diag("psImageRebin with mask didn't produce the proper mean " \ + "result at (%d,%d) [%f vs %f]", \ + col,row,outRow[col],truthRow[col]); \ + errorFlag = true;\ + } \ + } \ + ok(!errorFlag, "psImageRebin() produced the correct data"); \ + } \ + } \ + stats.options = PS_STAT_MAX; \ + ok(false, "XXXX: Skipping test because of a known seg fault"); \ + if (0) { \ + out2 = psImageRebin(out,in,NULL,0,3,&stats); \ + ok(out == out2, "psImageRebin didt recycle a psImage properly"); \ + ok(out != NULL, "psImageRebin returned non-NULL"); \ + ok(out->numRows == 6 && out->numCols == 6, \ + "psImageRebin did produce the proper size image"); \ + bool errorFlag = false; \ + for (psS32 row = 0; row<6; row++) { \ + ps##DATATYPE *outRow = out->data.DATATYPE[row]; \ + psF32 *truthRow = maxTruth->data.F32[row]; \ + for (psS32 col = 0; col<6; col++) { \ + if (fabsf((float)outRow[col]-(float)truthRow[col]) > FLT_EPSILON) { \ + diag("psImageRebin didn't produce the proper " \ + "max result at (%d,%d) [%f vs %f]", \ + col,row,outRow[col],truthRow[col]); \ + errorFlag = true;\ + } \ + } \ + } \ + ok(!errorFlag, "psImageRebin() produced the correct data"); \ + } \ + psFree(in); \ + psFree(out); \ + psFree(out3); \ + psFree(mask); \ + psFree(meanTruth); \ + psFree(meanTruthWMask); \ + psFree(maxTruth); \ + ok(!psMemCheckLeaks(id, NULL, NULL, false), "no memory leaks"); \ + } + + testRebinType(F32); + testRebinType(F64); + testRebinType(U16); + testRebinType(S8); + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input image type is not supported. + // Following should be an error for unsupported type + // XXX: Verify error + in = psImageAlloc(16,16,PS_TYPE_U8); + mask = psImageAlloc(16,16,PS_TYPE_F32); + stats.options = PS_STAT_SAMPLE_MEAN; + out = psImageRebin(NULL,in,NULL,0,4,&stats); + ok(out == NULL, "psImageRebin returned NULL for unsupported type"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the mask type is not U8 + // Following should be an error for invallid mask type + // XXX: Verify error + out = psImageRebin(NULL,in,mask,1,4,&stats); + ok(out == NULL, "psImageRebin returned NULL for incorrect mask"); + psFree(mask); + psFree(in); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter input is null. + out2 = psImageRebin(NULL,NULL,NULL,0,1,&stats); + ok(out2 == NULL, "psImageRebin returned NULL with NULL input"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter scale is less than or equal to zero. + in = psImageAlloc(16, 16, PS_TYPE_F32); + // Following should be an error for scale < 0 + // XXX: Verify error + out2 = psImageRebin(NULL,in,NULL,0,0,&stats); + ok(out2 == NULL, "psImageRebin returned NULL when the scale was zero"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter stats is null. + // Following should be an error for stats null + // XXX: Verify error + out2 = psImageRebin(NULL,in,NULL,0,1,NULL); + ok(out2 == NULL, "psImageRebin returned an NULL when the stats was NULL"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter psStats structure member options + // is zero or any value which doesn't correspond to a valid statistical + // method. + // Following should be an error for stats options 0 + // XXX: Verify error + stats.options = 0; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + ok(out2 == NULL, "psImageRebin returned an NULL when the stats options was zero"); + + //Following should be an error for stat options use range"); + // XXX: Verify error + stats.options = PS_STAT_USE_RANGE; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + ok(out2 == NULL, "psImageRebin returned an image though the stats options was PS_STAT_USE_RANGE"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter psStats structure member options + // specifies more than one valid statistical method. + // Following should be an error for stats with multiple options + // XXX: Verify error + stats.options = PS_STAT_SAMPLE_MEAN + PS_STAT_MAX; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + ok(out2 == NULL, "psImageRebin returned an NULL when the stats options was PS_STAT_SAMPLE_MEAN+PS_STAT_MAX"); + + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRoll() + { + psMemId id = psMemGetId(); + psImage *in; + psImage *out; + psImage *out2; + psS32 rows = 64; + psS32 cols = 64; + psS32 rows1 = 8; + psS32 cols1 = 8; + + // The function psImageRoll shall generate a new psImage structure by + // rolling the input image the correponding number of pixels in the vertical + // and/or horizontal direction. The image output image shall be the same size + // as the input image. Values which roll off the image are wrapped to the + // other side. + // + // Verify the returned psImage structure contains expected values, if the + // input image contains known values and the roll performed is known. + // Cases should include no roll, vertical roll, horizontal roll and + // combination vertical/horizontal rolls. Positive and negative rolls + // should be performed. + + in = psImageAlloc(cols,rows,PS_TYPE_F32); + for (psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows/4)%rows]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows/4)%rows]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows-rows/4)%rows]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows-rows/4)%rows]; + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;coldata.DATATYPE[row]; \ + for (psS32 col=0;coldata.DATATYPE[(row+rows1/4)%rows1]; \ + ps##DATATYPE *outRow = out->data.DATATYPE[row]; \ + for (psS32 col=0;coldata.F32[row]; + psS16 *sRow = sImg->data.S16[row]; + for (psS32 col=0;colnumRows != fOut->numRows || fTruth->numCols != fOut->numCols) { + diag("Rotated float image size did not equal truth image for %d deg rotation (%dx%d vs %dx%d)", + rot,fOut->numCols,fOut->numRows,fTruth->numCols,fTruth->numRows); + errorFlag = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psF32 *truthRow = fTruth->data.F32[row]; + psF32 *outRow = fOut->data.F32[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + diag("Float Image mismatch (%f vs %f) at %d,%d", + outRow[col], truthRow[col],col,row); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageRotate() produced the correct data values (%d degree rotation)", rot); + + + errorFlag = false; + if (sTruth == NULL) { + diag("verified psS16 image failed to be read (%d deg. rotation)",rot); + errorFlag = true; + } else { + if (sTruth->numRows != sOut->numRows || + sTruth->numCols != sOut->numCols) { + diag("Rotated psS16 image size did not match truth image for %d deg rotation",rot); + errorFlag = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psS16 *truthRow = sTruth->data.S16[row]; + psS16 *outRow = sOut->data.S16[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + diag("Short Image mismatch (%d vs %d) at %d,%d", + outRow[col], truthRow[col],col,row); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageRotate() produced the correct data values (%d degree rotation)", rot); + + + errorFlag = false; + if (fBiTruth == NULL) { + diag("verified psF32 Bi image failed to be read (%d deg. rotation)", + rot); + errorFlag = true; + } else { + if (fBiTruth->numRows != fBiOut->numRows || fBiTruth->numCols != fBiOut->numCols) { + diag("Rotated float image size did not match truth " + "image for %d deg rotation (%dx%d vs %dx%d). BILINEAR", + rot,fBiOut->numCols,fBiOut->numRows,fBiTruth->numCols,fBiTruth->numRows); + errorFlag = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psF32 *truthRow = fBiTruth->data.F32[row]; + psF32 *outRow = fBiOut->data.F32[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + diag("Float Image mismatch (%f vs %f) at %d,%d. BILINEAR", + outRow[col], truthRow[col],col,row); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageRotate() produced the correct data values (%d degree rotation)", rot); + + + if (sBiTruth == NULL) { + diag("verified psS16 image failed to be read " + "(%d deg. rotation) BILINEAR",rot); + errorFlag = true; + fail = true; + } else { + if (sBiTruth->numRows != sBiOut->numRows || + sBiTruth->numCols != sBiOut->numCols) { + diag("Rotated psS16 image size did not match truth " + "image for %d deg rotation. BILINEAR",rot); + errorFlag = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psS16 *truthRow = sBiTruth->data.S16[row]; + psS16 *outRow = sBiOut->data.S16[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + diag("Short Image mismatch (%d vs %d) " + "at %d,%d. BILINEAR", + outRow[col], truthRow[col],col,row); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageRotate() produced the correct data values (%d degree rotation)", rot); + + index++; + } + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameter input is null. + // Following should be an error + // XXX: Verify error + fOut = psImageRotate(fOut,NULL,0,0,PS_INTERPOLATE_FLAT); + ok(fOut == NULL, "NULL was returned when the input image was NULL"); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the specified interpolation mode is unallowed + // Following should be an error for unallowed interpolation type + // XXX: Verify error + fOut = psImageRotate(fOut, fImg, 33, 0, -1); + ok(fOut == NULL, "NULL was returned when the interpolation mode is unallowed"); + + psFree(sOut); + psFree(fImg); + psFree(sImg); + psFree(fTruth); + psFree(sTruth); + psFree(sBiOut); + psFree(fBiTruth); + psFree(sBiTruth); + psFree(fBiOut); + + psFree(fOutFile); + psFree(sOutFile); + psFree(fBiOutFile); + psFree(sBiOutFile); + + psFree(fTruthFile); + psFree(sTruthFile); + psFree(fBiTruthFile); + psFree(sBiTruthFile); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageShift() + { + psMemId id = psMemGetId(); + // This functions shall generate a new psImage structure by shifting the + // input psImage structure a specified number of pixels in the horizontal + // and/or vertical directions. + // + // Verify the returned psImage structure contains expected values, if the + // input psImage structure contains known values and a know shift in the + // vertical and/or horizontal directions. Cases should include no shift, + // vertical only(up,down), horizontal only(right, left), and combination + // shift. Cases should include fractional shifts. Comparison of expected + // values should include a delta to allow for testing on different + // platforms. + // + // Verify the returned psImage structure contains values for pixels not in + // the original image set to the input parameter exposed. + + // integer shift + // XXXX: These fail + ok(false, "XXXX: Skipping psImageShift() tests because of known failures"); + if (0) + { + ok(testImageShiftCase(64,128,0.0f,0.0f), "psImageShift (0, 0)"); + ok(testImageShiftCase(64,128,0.0f,16.0f), "psImageShift (0, 16)"); + ok(testImageShiftCase(64,128,0.0f,-16.0f), "psImageShift (0, -16)"); + ok(testImageShiftCase(64,128,32.0f,0.0f), "psImageShift (32, 0)"); + ok(testImageShiftCase(64,128,-32.0f,0.0f), "psImageShift (-32, 0)"); + ok(testImageShiftCase(64,128,32.0f,16.0f), "psImageShift (32, 16)"); + ok(testImageShiftCase(64,128,32.0f,-16.0f), "psImageShift (32, -16)"); + ok(testImageShiftCase(64,128,-32.0f,16.0f), "psImageShift (-32, 16)"); + ok(testImageShiftCase(64,128,-32.0f,-16.0f), "psImageShift (-32, -16)"); + + // fractional shift + ok(testImageShiftCase(64,128,0.0f,16.4f), "psImageShift (0, 16.4)"); + ok(testImageShiftCase(64,128,0.0f,-16.4f), "psImageShift (0, -16.4)"); + ok(testImageShiftCase(64,128,32.7f,0.0f), "psImageShift (32.7, 0)"); + ok(testImageShiftCase(64,128,-32.7f,0.0f), "psImageShift (-32.7, 0)"); + ok(testImageShiftCase(64,128,32.6f,16.2f), "psImageShift (32.6, 16.2)"); + ok(testImageShiftCase(64,128,32.6f,-16.2f), "psImageShift (32.6, -16.2)"); + ok(testImageShiftCase(64,128,-32.6f,16.2f), "psImageShift (-32.6, 16.2)"); + ok(testImageShiftCase(64,128,-32.6f,-16.2f), "psImageShift (-32.6, -16.2)"); + } + + // Verify the returned psImage structure pointer is equal to the input + // parameter out if provided. + psImage *fImg = psImageAlloc(32,32,PS_TYPE_F32); + psImage *fRecycle = psImageAlloc(32,32,PS_TYPE_F32); + psImage *fOut = psImageShift(fRecycle, fImg, 8,8, NAN, PS_INTERPOLATE_FLAT); + ok(fRecycle == fOut, "psImageShift did recycle my image"); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input psImage structure pointer is null. + // Following should be an error + // XXX: Verify error + fOut = psImageShift(fOut,NULL,8,8,NAN,PS_INTERPOLATE_FLAT); + ok(fOut == NULL, "psImageShift did return NULL given a NULL input image"); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the specified interpolation mode is unallowed. + // Following should be an error for unallowed interpolation mode + // XXX: Verify error + fOut = psImageShift(fOut,fImg,8,8,NAN,-1); + ok(fOut == NULL, "psImageShift did return NULL given an unallowed interpolation mode"); + + psFree(fImg); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageResample() + { + psMemId id = psMemGetId(); + + psS32 rows = 60; + psS32 cols = 80; + psImage *result = NULL; + psS32 scale = 4; + psErr *err; + + psImage *image = psImageAlloc(cols,rows,PS_TYPE_F32); + for(psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;coltype.type == PS_TYPE_F32, "psImageResample() produced the correct type"); + + + ok(result->numCols == image->numCols*scale && result->numRows == image->numRows*scale, + "psImageResample() produced the correct size"); + + + bool errorFlag = false; + psF32 truthValue; + for(psS32 row=0;rownumRows;row++) + { + for (psS32 col=0;colnumCols;col++) { + truthValue = psImagePixelInterpolate(image, + (float)col/(float)scale,(float)row/(float)scale, + NULL,0,-1,PS_INTERPOLATE_FLAT); + if (fabs(truthValue - result->data.F32[row][col]) > FLT_EPSILON) { + diag("value bad at (%d,%d). Got %g, expected %g", + col,row,result->data.F32[row][col], truthValue); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageResample() produced the correct data values"); + + // verify that image=null is handled properly. + psErrorClear(); + result = psImageResample(result,NULL,scale,PS_INTERPOLATE_FLAT); + ok(result == NULL, "psImageResample() returned NULL with NULL input"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, "psImageResample() produced the correct error message"); + psFree(err); + + // verify that scale < 1 is handled properly + psErrorClear(); + result = psImageResample(result,image,0,PS_INTERPOLATE_FLAT); + ok(result == NULL, "psImageResample() returned NULL with scale < 1"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, "psImageResample() produced the correct error message"); + psFree(err); + + // verify that unallowed interpolation mode is handled properly + psErrorClear(); + result = psImageResample(result,image,2,-1); + ok(result == NULL, "psImageResample() returned NULL with unallowed interpolation mode"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, "psImageResample() produced the correct error message"); + psFree(err); + + // Verify that that an unallowed image type is handled properly + psErrorClear(); + psImage *invImage = psImageAlloc(cols,rows,PS_TYPE_BOOL); + memset(invImage->p_rawDataBuffer,0,cols*rows*PSELEMTYPE_SIZEOF(PS_TYPE_BOOL)); // make sure the image is of all NULLs + result = psImageResample(result,invImage,2,PS_INTERPOLATE_FLAT); + ok(result == NULL, "psImageResample() returned NULL with unallowed image type"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_TYPE, "psImageResample() produced the correct error message"); + psFree(err); + + psFree(image); + psFree(result); + psFree(invImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageTransform() + { + psMemId id = psMemGetId(); + int cols = 16; + int rows = 32; + + psPlaneTransform *trans = psPlaneTransformAlloc(2,2); + trans->x->coeff[1][0] = 0.5; + trans->y->coeff[0][1] = 1.5; + + psImage *in = psImageAlloc(cols,rows,PS_TYPE_F32); + for (psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;colcol0 = 1; + psImage *out = psImageTransform(NULL, + NULL, + in, + NULL, + 0, + trans, + psRegionSet(1,1+cols*2,0,rows*2), + NULL, + PS_INTERPOLATE_FLAT, + -1); + + ok(out != NULL, "psImageTransform() returned non-NULL"); + ok(out->type.type == PS_TYPE_F32, "psImageTransform() produced the correct type"); + ok(out->numRows == rows*2 && out->numCols == cols*2, "psImageTransform() produced the correct size"); + + bool errorFlag = false; + for (psS32 row=0;rownumRows;row++) + { + psF32 *outRow = out->data.F32[row]; + for (psS32 col=0;colx->coeff[1][0]+trans->x->coeff[0][0]+1, + row*trans->y->coeff[0][1]+trans->y->coeff[0][0], + NULL, 0, + -1); + if (fabsf(outRow[col] - inValue) > 0.01) { + diag("out at %d,%d was %g, expected %g", col,row,outRow[col], inValue); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageTransform() produced the correct data values"); + + psFree(out); + psFree(in); + psFree(trans); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageInterpolate.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageInterpolate.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageInterpolate.c (revision 12167) @@ -0,0 +1,329 @@ +/** @file tst_psImageInterpolate.c + * + * @brief Contains the tests for psImagePixelInterpolate + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ + * $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-30 00:13:01 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define GENIMAGE(img,c,r,TYP,valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for(psU32 row=0; rowdata.TYP[row]; \ + for(psU32 col=0; coldata.U8[1][1] = 1; + CHECK_INTERP_VALUE(img1,1.9,1.6,msk1,1,10.0,FLAT,10.0) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (upper left pixel) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.25) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (upper right pixel) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.75) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (lower left pixel) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.25) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (lower right pixel) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.75) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (upper pixels) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.5) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (lower pixels) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.5) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (left pixels) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.5) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask and one mask value for bilinear (right pixels) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.5) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask only one valid pixel (upper left) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.0) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask only one valid pixel (upper right) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.0) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask only one valid pixel (lower left) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.0) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask only one valid pixel (lower right) + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,6.0) + psFree(msk1); + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Perform interpolate with mask no valid pixels + { + psMemId id = psMemGetId(); + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,0.0) + psFree(msk1); + psFree(img1); + return 0; + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Perform interpolation for a 1D image + { + psMemId id = psMemGetId(); + psImage* img1 = NULL; + GENIMAGE(img1,10,1,F32,row+col) + CHECK_INTERP_VALUE(img1,4.0,0.0,NULL,0,100.0,BILINEAR,3.5) + psFree(img1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} + Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageMaskOps.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageMaskOps.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageMaskOps.c (revision 12167) @@ -0,0 +1,739 @@ +/** @file tst_psImageMaskOps.c + * + * @brief Contains the tests for psMaskOps.[ch] + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-09 20:40:22 $ + * + * XXX: In general, the image tests with (1, N) and (N, 1) failed and have + * been excluded. + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define N 20 +#define MASK_VAL 10 +#define GROW_SIZE 5 +#define GROW_VAL 15 + +bool genericImageGrowMaskTest(int rows, int cols, int maskVal, int growSize, int growVal) +{ + // Try with legitimate data + // XXX: psImageGrowMask() is currently growing a circular mask when the SCD + // specs a square mask. + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(rows, cols, PS_TYPE_MASK); + psImage *inout = psImageAlloc(rows, cols, PS_TYPE_MASK); + for (int i = 0 ; i < rows ; i++) { + for (int j = 0 ; j < cols ; j++) { + in->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + in->data.PS_TYPE_MASK_DATA[N/2][N/2] = maskVal; + psImage *out = psImageGrowMask(NULL, in, maskVal, growSize, growVal); + ok(out != NULL, "psImageGrowMask() returned non-NULL with legitimate data"); + skip_start(out == NULL, 1, "Skipping tests because psImageGrowMask() returned NULL"); + ok(out->type.type == PS_TYPE_MASK, "psImageGrowMask() returned correct type mask"); + ok((out->numRows == in->numRows) && (out->numCols == in->numCols), + "psImageGrowMask() returned correct size mask"); + bool errorFlag = false; + for (int i = 0 ; i < rows ; i++) { + for (int j = 0 ; j < cols ; j++) { + if (((rows/2-i)*(rows/2-i)+(cols/2-j)*(cols/2-j)) <= (growSize*growSize)) { + if (out->data.PS_TYPE_MASK_DATA[i][j] != growVal) { + diag("out[%d][%d] is incorrect (%d)", i, j, out->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } else { + if (out->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("out[%d][%d] is incorrect (%d)", i, j, out->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + ok(!errorFlag, "psImageGrowMask() produced the correct data values"); + skip_end(); + psFree(in); + psFree(out); + psFree(inout); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return true; +} + +bool testInRegion(psRegion region, int row, int col) +{ + return(row >= region.y0 && row <= region.y1 && col >= region.x0 && col <= region.x1); +} + + +bool genericImageMaskRegionTest(int numRows, int numCols) +{ + psMemId id = psMemGetId(); + psMaskType maskVal = 1; + psRegion reg; + reg.x0 = numCols/4; + reg.x1 = 3 * numCols/4; + reg.y0 = numRows/4; + reg.y1 = 3 * numRows/4; + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + + psBool errorFlag = false; + // psImageMaskRegion(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageMaskRegion(img, reg, "|", maskVal); + errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskRegion() produced the correct results for logical or"); + + // psImageMaskRegion(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageMaskRegion(img, reg, "=", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskRegion() produced the correct results for ="); + + // psImageMaskRegion(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageMaskRegion(img, reg, "&", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskRegion() produced the correct results for logical and"); + + // psImageMaskRegion(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageMaskRegion(img, reg, "^", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xf0) { + diag("ERROR: img[%d][%d] is %d, should be 0xf0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskRegion() produced the correct results for logical xor"); + + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(true); +} + + + +bool genericImageKeepRegionTest(int numRows, int numCols) +{ + psMemId id = psMemGetId(); + psMaskType maskVal = 1; + psRegion reg; + reg.x0 = numCols/4; + reg.x1 = 3 * numCols/4; + reg.y0 = numRows/4; + reg.y1 = 3 * numRows/4; + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + + psBool errorFlag = false; + // psImageKeepRegion(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageKeepRegion(img, reg, "|", maskVal); + errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepRegion() produced the correct results for logical or"); + + // psImageKeepRegion(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageKeepRegion(img, reg, "=", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepRegion() produced the correct results for ="); + + // psImageKeepRegion(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageKeepRegion(img, reg, "&", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepRegion() produced the correct results for logical and"); + + // psImageKeepRegion(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageKeepRegion(img, reg, "^", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInRegion(reg, i, j)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xf0) { + diag("ERROR: img[%d][%d] is %d, should be 0xf0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepRegion() produced the correct results for logical xor"); + + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(true); +} + + +bool testInCircle(psImage *img, double xCenter, double yCenter, double radius, double xCoord, double yCoord) +{ + return((((xCoord+img->col0)-xCenter) * ((xCoord+img->col0)-xCenter) + + ((yCoord+img->row0) - yCenter) * ((yCoord+img->row0) - yCenter)) <= (radius * radius)); +} + + + +bool genericImageMaskCircleTest(int numRows, int numCols, int x, int y, int radius) +{ + psMemId id = psMemGetId(); + psMaskType maskVal = 1; + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + + psBool errorFlag = false; + // psImageMaskCircle(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageMaskCircle(img, (psF64) x, (psF64) y, (psF64) radius, "|", maskVal); + errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskCircle() produced the correct results for logical or"); + + // psImageMaskCircle(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageMaskCircle(img, (psF64) x, (psF64) y, (psF64) radius, "=", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskCircle() produced the correct results for ="); + + // psImageMaskCircle(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageMaskCircle(img, (psF64) x, (psF64) y, (psF64) radius, "&", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskCircle() produced the correct results for logical and"); + + // psImageMaskCircle(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageMaskCircle(img, (psF64) x, (psF64) y, (psF64) radius, "^", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xf0) { + diag("ERROR: img[%d][%d] is %d, should be 0xf0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageMaskCircle() produced the correct results for logical xor"); + + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(true); +} + + +bool genericImageKeepCircleTest(int numRows, int numCols, int x, int y, int radius) +{ + psMemId id = psMemGetId(); + psMaskType maskVal = 1; + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + + psBool errorFlag = false; + // psImageKeepCircle(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageKeepCircle(img, (psF64) x, (psF64) y, (psF64) radius, "|", maskVal); + errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepCircle() produced the correct results for logical or"); + + // psImageKeepCircle(): logical or + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + psImageKeepCircle(img, (psF64) x, (psF64) y, (psF64) radius, "=", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0) { + diag("ERROR: img[%d][%d] is %d, should be 0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepCircle() produced the correct results for ="); + + // psImageKeepCircle(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageKeepCircle(img, (psF64) x, (psF64) y, (psF64) radius, "&", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != maskVal) { + diag("ERROR: img[%d][%d] is %d, should be %d", i, j, img->data.PS_TYPE_MASK_DATA[i][j], maskVal); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepCircle() produced the correct results for logical and"); + + // psImageKeepCircle(): logical and + { + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + img->data.PS_TYPE_MASK_DATA[i][j] = 0xff; + } + } + maskVal = 0xf; + psImageKeepCircle(img, (psF64) x, (psF64) y, (psF64) radius, "^", maskVal); + psBool errorFlag = false; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (!testInCircle(img, (psF64) x, (psF64) y, (psF64) radius, (psF64) j, (psF64) i)) { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xf0) { + diag("ERROR: img[%d][%d] is %d, should be 0xf0", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } else { + if (img->data.PS_TYPE_MASK_DATA[i][j] != 0xff) { + diag("ERROR: img[%d][%d] is %d, should be 0xff", i, j, img->data.PS_TYPE_MASK_DATA[i][j]); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psImageKeepCircle() produced the correct results for logical xor"); + + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(true); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(47); + + // psImageGrowMask() + // *psImageGrowMask(psImage *out, const psImage *in, + // psMaskType maskVal, unsigned int growSize, + // psMaskType growVal) + // psImageGrowMask grows specified values on the input mask image, in, + // returning the result. If out is NULL, then a new image of the same type + // and dimension as in shall be allocated and returned; otherwise out shall + // be modified. If out is non-NULL and does not have the same size and type + // as in, the function shall generate an error and return NULL. Pixels in + // the in image within growSize pixels (either horizontal or vertical) of a + // pixel which matches the maskVal shall have the corresponding pixel in the + // out image set to the growValue. + + psMaskType maskVal = 0; + psMaskType growVal = 0; + unsigned int growSize = 0; + + // return null for null input image + { + psMemId id = psMemGetId(); + psImage *inout = psImageAlloc(N, N, PS_TYPE_MASK); + psImage *out = psImageGrowMask(inout, NULL, maskVal, growSize, growVal); + ok(out == NULL, "psImageGrowMask() returned NULL with NULL input image"); + psFree(out); + psFree(inout); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // return null for incompatible image size + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(5, 5, PS_TYPE_MASK); + psImage *inout = psImageAlloc(2, 2, PS_TYPE_MASK); + psImage *out = psImageGrowMask(inout, in, maskVal, growSize, growVal); + ok(out == NULL, "psImageGrowMask() returned NULL with incompatible image size"); + psFree(in); + psFree(out); + psFree(inout); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // return null for incompatible out image type + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(5, 5, PS_TYPE_MASK); + psImage *inout = psImageAlloc(5, 5, PS_TYPE_F32); + psImage *out = psImageGrowMask(inout, in, maskVal, growSize, growVal); + ok(out == NULL, "psImageGrowMask() returned NULL with incompatible out image type"); + psFree(in); + psFree(out); + psFree(inout); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // return NULL for input image that doesn't match PS_TYPE_MASK + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(5, 5, PS_TYPE_F32); + psImage *inout = psImageAlloc(5, 5, PS_TYPE_MASK); + psImage *out = psImageGrowMask(inout, in, maskVal, growSize, growVal); + ok(out == NULL, "psImageGrowMask() returned NULL with incompatible in image type"); + psFree(in); + psFree(out); + psFree(inout); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + // XXX: These tests fail + if (0) { + genericImageGrowMaskTest(N, 1, MASK_VAL, GROW_SIZE, GROW_VAL); + } + if (0) { + genericImageGrowMaskTest(1, N, MASK_VAL, GROW_SIZE, GROW_VAL); + } + // Try with grow region outside image + genericImageGrowMaskTest(N, N, MASK_VAL, N*2, GROW_VAL); + // Try with zero-size grow region + genericImageGrowMaskTest(N, N, MASK_VAL, 0, GROW_VAL); + // Try with sensible parameters + genericImageGrowMaskTest(N, N, MASK_VAL, GROW_SIZE, GROW_VAL); + + + + // psImageMaskRegion + // Generate error NULL input image that doesn't match PS_TYPE_MASK + // XXX: Verify error + { + psMemId id = psMemGetId(); + psRegion reg; + reg.x0 = 1; + reg.x1 = 2; + reg.y0 = 1; + reg.y1 = 2; + psMaskType maskVal = 2; + psImageMaskRegion(NULL, reg, "|", maskVal); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + if (0) genericImageMaskRegionTest(N, 1); + if (0) genericImageMaskRegionTest(1, N); + genericImageMaskRegionTest(N, N); + + + // psImageKeepRegion + // Generate error NULL input image that doesn't match PS_TYPE_MASK + // XXX: Verify error + { + psMemId id = psMemGetId(); + psRegion reg; + reg.x0 = 1; + reg.x1 = 2; + reg.y0 = 1; + reg.y1 = 2; + psImageKeepRegion(NULL, reg, "|", 1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + if (0) genericImageKeepRegionTest(N, 1); + if (0) genericImageKeepRegionTest(1, N); + genericImageKeepRegionTest(N, N); + + + // psImageMaskCircle + // Generate error NULL input image that doesn't match PS_TYPE_MASK + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImageMaskCircle(NULL, 1.0, 2.0, 3.0, "|", 1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + if (0) genericImageMaskCircleTest(N, 1, N/2, 1, N/4); + if (0) genericImageMaskCircleTest(1, N, 1, N/2, N/4); + genericImageMaskCircleTest(N, N, N/2, N/2, N/4); + + + // psImageKeepCircle + // Generate error NULL input image that doesn't match PS_TYPE_MASK + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImageKeepCircle(NULL, 1.0, 2.0, 3.0, "|", 1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + if (0) genericImageKeepCircleTest(N, 1, N/2, 1, N/4); + if (0) genericImageKeepCircleTest(1, N, 1, N/2, N/4); + genericImageKeepCircleTest(N, N, N/2, N/2, N/4); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelExtract.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelExtract.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelExtract.c (revision 12167) @@ -0,0 +1,1251 @@ +/** @file tst_psImageExtraction.c +* +* @brief Contains the tests for psImageExtraction.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 01:26:20 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(244); + + // testImageSlice() + { + psMemId id = psMemGetId(); + const psS32 r = 200; + const psS32 c = 300; + const psS32 m = r / 2 -1; + const psS32 n = r / 4 -1; + psImage* image; + psPixels* positions = psPixelsAlloc( r ); + psImage* mask = psImageAlloc( c, r, PS_TYPE_MASK ); + psStats* stat = psStatsAlloc( PS_STAT_SAMPLE_MEDIAN ); + + + // This function shall extract pixels from a specified region of a psImage + // structure into a vector using a specified statistical method. + // + // Verify the returned psVector structure contains expected data, if the + // input psImage input has known data and the psStats structure specifies + // a known statistical method. At least two different statistical methods + // should be used within a valid range of psImage data. Allow for a delta + // when comparing results to allow for testing a different platforms. Two + // cases should be used for each possible direction. Data region cases + // should include 0x0, 1x1, Nx1, 1xN, NxN, MxN + for ( psS32 row = 0;row < r;row++ ) { + psMaskType* maskRow = mask->data.PS_TYPE_MASK_DATA[row]; + for ( psS32 col = 0;col < c;col++ ) { + maskRow[ col ] = 0; + } + } + + #define PSIMAGESLICE_TEST1(TYPE,M,N,DIRECTION,TRUTH_SIZE,TRUTHPIX_X,TRUTHPIX_Y,TESTNUM) \ + { \ + psMemId id = psMemGetId(); \ + psVector* out = NULL; \ + bool errorFlag = false; \ + image = psImageAlloc( c, r, PS_TYPE_##TYPE ); \ + for ( psS32 row = 0;row < r;row++ ) { \ + ps##TYPE *imageRow = image->data.TYPE[ row ]; \ + ps##TYPE rowOffset = row * 2; \ + for ( psS32 col = 0;col < c;col++ ) { \ + imageRow[ col ] = col + rowOffset; \ + } \ + } \ + image->col0 = 1; \ + image->row0 = 1; \ + out = psImageSlice(out,positions,image,mask,1, \ + psRegionSet(1+c/10,1+c/10+M,1+r/10,1+r/10+N),DIRECTION,stat); \ + \ + if (out->n != TRUTH_SIZE) { \ + diag("Number of results is wrong (%d, not %d)", \ + out->n,TRUTH_SIZE); \ + errorFlag = true; \ + } \ + \ + if (positions->n != TRUTH_SIZE) { \ + diag("Number of results for positions vector is wrong (%d, not %d)", \ + positions->n,TRUTH_SIZE); \ + errorFlag = true; \ + } \ + \ + for (psS32 i=0;in;i++) { \ + if (fabs(out->data.F64[i]-image->data.TYPE[r/10+TRUTHPIX_Y][c/10+TRUTHPIX_X]) > 1.0/(psF64)r) { \ + diag("Improper result at position %d. Got %g, expected %g",i, \ + out->data.F64[i],image->data.TYPE[r/10+TRUTHPIX_Y][c/10+TRUTHPIX_X]); \ + errorFlag = true; \ + } \ + if (DIRECTION == PS_CUT_X_POS || DIRECTION == PS_CUT_X_NEG) { \ + if (positions->data[i].x != c/10+TRUTHPIX_X) { \ + diag("Improper positions (%d vs %d) result @ %d.", \ + positions->data[i].x,c/10+TRUTHPIX_X,i); \ + errorFlag = true; \ + } \ + } else { \ + if (positions->data[i].y != r/10+TRUTHPIX_Y) { \ + diag("Improper positions (%d vs %d) result @ %d.", \ + positions->data[i].y,r/10+TRUTHPIX_Y,i); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageSlice() produced correct data values (test number %d", TESTNUM); \ + psFree(out); \ + psFree(image); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + // + #define PSIMAGESLICE_TEST(TYPE) \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_X_POS, m, i, n / 2, 0 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_X_NEG, m, m - 1 - i, n / 2, 1 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_Y_POS, n, m / 2, i, 2 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_Y_NEG, n, m / 2, n - 1 - i, 3 ); \ + \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_X_POS, m, i, 0, 4 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_X_NEG, m, m - 1 - i, 0, 5 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_Y_POS, 1, m / 2, 0, 6 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_Y_NEG, 1, m / 2, 0, 7 ); \ + \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_X_POS, 1, 0, n / 2, 8 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_X_NEG, 1, 0, n / 2, 9 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_Y_POS, n, 0, i, 10 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_Y_NEG, n, 0, n - 1 - i, 11 ); \ + \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_X_POS, 1, 0, 0, 12 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_X_NEG, 1, 0, 0, 13 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_Y_POS, 1, 0, 0, 14 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_Y_NEG, 1, 0, 0, 15 ); \ + + PSIMAGESLICE_TEST(F32); + + PSIMAGESLICE_TEST(F64); + PSIMAGESLICE_TEST(U16); + + image = psImageAlloc(c, r, PS_TYPE_F32); + // Verify the returned psVector structure pointer is null and program + // execution doesn't stop, if input psImage input is null. + // Following should be an error + // XXX: Verify error + + + psVector *out = NULL; + out = psImageSlice(out, + NULL, NULL, + NULL, 0, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat ); + ok(out == NULL, "psImageSlice() returned NULL with NULL input"); + + // Verify the returned psVector structure pointer is null and program + // execution doesn't stop, if input psStats stats is null. + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, + NULL, image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + NULL ); + ok(out == NULL, "psImageSlice() returned NULL with NULL psStats"); + psError( PS_ERR_UNKNOWN,true, "Giving a NULL stat struct, psImageSlice didn't return NULL as expected" ); + + // Verify the returned psVector structure pointer is null and program + // executions doesn't stop, if the input direction is not set to one of + // the two valid values. + // Following should be an error + // XXX: Verify error + out = psImageSlice(out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + 5, + stat); + ok(out == NULL, "psImageSlice() returned NULL with bogus direction flag"); + + // Verify the returned psVector structure pointer is null and program + // execution doesn't stop, if the input nrow and/or ncol are zero. + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, + NULL, + image, + mask, 1, + psRegionSet(c/10, c/10, r/10, r/10), + PS_CUT_X_POS, + stat ); + ok(out == NULL, "psImageSlice() returned NULL with 0x0 region"); + + // Verify the returned psVector structure pointer is null and program + // execution doesn't stop, if the inputs row, col, nrow, ncol specify a + // regions of data that is not within the input psImage structure. + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c+1, c+2, r/10, r/10 + 10), + PS_CUT_X_POS, + stat ); + ok(out == NULL, "psImageSlice() returned NULL with unallowed x position"); + + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r+1,r+5), + PS_CUT_X_POS, + stat ); + ok(out == NULL, "psImageSlice() returned NULL with unallowed y position"); + + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c+1, r/10, r/10+1), + PS_CUT_X_POS, + stat); + ok(out == NULL, "psImageSlice() returned NULL with unallowed numCols"); + + // Following should be an error + // XXX: Verify error + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r + 1), + PS_CUT_X_POS, + stat); + ok(out == NULL, "psImageSlice() returned NULL with unallowed numRows"); + + // Verify the returned psVector structure pointer is null and program + // execution doesn't stop, if the input psStat structure member options is + // zero which indicates no statistic method specified. + // Following should be an error + // XXX: Verify error + stat->options = 0; + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10+1), + PS_CUT_X_POS, + stat); + ok(out == NULL, "psImageSlice() returned NULL with unallowed numRows"); + + // Verify that a mask of different size than the input image returns null and program + // execution doesn't stop. + // Following should be an error mask size != image size + // XXX: Verify error + stat->options = PS_STAT_SAMPLE_MEDIAN; + psImage* maskSz = psImageAlloc( r, c, PS_TYPE_MASK ); + out = psImageSlice( out, NULL, + image, + maskSz, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat); + ok(out == NULL, "psImageSlice() returned NULL with differing mask size and image size"); + + // Verify the a unallowed type mask returns null and program execution doesn't stop. + // Following should be an error unallowed mask type + // XXX: Verify error + psImage* maskS8 = psImageAlloc( c, r, PS_TYPE_S8 ); + out = psImageSlice( out, NULL, + image, + maskS8, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat); + ok(out == NULL, "psImageSlice() returned NULL with unallowed mask type"); + + //Added tests after subimage changes. + psFree(image); + image = psImageAlloc( c, r, PS_TYPE_F64 ); + for ( psS32 row = 0;row < r;row++ ) { + psF64 *imageRow = image->data.F64[ row ]; + psF64 rowOffset = row * 2; + for ( psS32 col = 0;col < c;col++ ) { + imageRow[ col ] = col + rowOffset; + } + } + image->col0 = 1; + image->row0 = 1; + psFree(out); + out = NULL; + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + ok(out != NULL, "psImageSlice() with correct inputs"); + psFree(out); + out = NULL; + + //Return NULL for incorrect image inputs. + image->row0 = -1; + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + image->col0 = -1; + image->row0 = 1; + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + image->col0 = 1; + // Return NULL for incorrect region inputs. + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(0,c,1,r),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r+1),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,-r-2),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(c,1,1,r),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + + // Following should generate error message + // XXX: Verify error + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,1,1,1),PS_CUT_X_POS,stat); + ok(out == NULL, "psImageSlice returned NULL for unallowed specified input"); + + + //Make sure that regions match appropriately... + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,-1,1,-1),PS_CUT_Y_NEG,stat); + psVector *out2 = NULL; + out2 = psImageSlice(out2,positions,image,mask,1, + psRegionSet(0,0,0,0),PS_CUT_Y_NEG,stat); + ok(out != NULL, "psImageSlice returned non-NULL for valid inputs"); + ok(out2 != NULL, "psImageSlice returned non-NULL for valid inputs"); + skip_start(out == NULL || out2 == NULL, 2, "Skipping tests because psImageSlice() returned NULL"); + ok(out->n == out2->n, "psImageSlice returned matching vectors for equivalent inputs"); + ok(out->data.F64[out->n-1] == out2->data.F64[out2->n-1], "psImageSlice returned matching vectors for equivalent inputs"); + skip_end(); + psFree(out2); + psFree(image); + psFree(positions); + psFree(mask); + psFree(out); + psFree(stat); + psFree(maskS8); + psFree(maskSz); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageCut() + { + psMemId id = psMemGetId(); + psS32 c = 300; + psS32 r = 200; + psS32 numPoints = 15; + float startCol[] = { 40,150, 40, 0,280, 40,280, -1,300, 20, 20, 20, 20, 20, 20}; + float endCol[] = {240,150,240,299, 40,240, 40,240,240, -1,300,240,240,240,240}; + float startRow[] = { 20, 10,100, 0, 20,180,180, 10, 10, 10, 10, -1,200, 10, 10}; + float endRow[] = {160,180,100,199,160, 10, 10,180,180,180,180,180,180, -1,200}; + psBool success[] = {true,true,true,true,true,true,true,false,false,false,false,false,false,false,false}; + psU32 length = 100; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + psImage* mask = psImageAlloc(c,r,PS_TYPE_MASK); + for (psS32 row = 0; row < image->numRows; row++) { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = (psF32)col + (psF32)row/1000.0f; + if ((row & 0x0F) == 0) { + mask->data.PS_TYPE_MASK_DATA[row][col] = 1; + } else { + mask->data.PS_TYPE_MASK_DATA[row][col] = 0; + } + } + } + psVector* rows = psVectorAlloc(length,PS_TYPE_F32); + psVector* cols = psVectorAlloc(length,PS_TYPE_F32); + + psVector* result = NULL; + for (psS32 n = 0; n < numPoints; n++) { + psVector* orig = result; + if (! success[n]) { + // The following should be an error + // XXX: Verify error + } + if (n == 1) { + result = psImageCut(result, + cols,rows, + image, + NULL,0, + psRegionSet(startCol[n], endCol[n], startRow[n],endRow[n]), + length, + PS_INTERPOLATE_FLAT); + } else { + result = psImageCut(result, + cols,rows, + image, + mask,1, + psRegionSet(startCol[n], endCol[n], startRow[n], endRow[n]), + length, + PS_INTERPOLATE_FLAT); + } + + bool errorFlag = false; + if (success[n]) { + ok(result != NULL, "psImageCut returned non-NULL"); + ok(orig != NULL, "orig image is non-NULL"); + ok(orig == result, "psImageCut did recycle the out parameter properly"); + + float deltaRow = (endRow[n]-startRow[n])/(length-1); + float deltaCol = (endCol[n]-startCol[n])/(length-1); + psF32 truth; + for (psS32 i = 0; i < length; i++) { + float x = (float)startCol[n]+(float)i*deltaCol; + float y = (float)startRow[n]+(float)i*deltaRow; + if (n == 1) { + truth = psImagePixelInterpolate( image, x, y, + NULL,0,0,PS_INTERPOLATE_FLAT); + } else { + truth = psImagePixelInterpolate( image, x, y, + mask,1,0,PS_INTERPOLATE_FLAT); + } + if (fabs(result->data.F32[i]-truth) > FLT_EPSILON) { + diag("Bad result in position %d; Found %g but expected %g.", + i, result->data.F32[i], truth); + errorFlag = true; + } + if (fabsf(x - cols->data.F32[i]) > FLT_EPSILON || + fabsf(y - rows->data.F32[i]) > FLT_EPSILON) { + diag("Bad resulting col/row at index %d; Found (%g,%g) but expected (%g,%g).", + i, cols->data.F32[i], rows->data.F32[i], x, y); + errorFlag = true; + } + } + } else { + if (result != NULL) { + diag("psImageCut did not return NULL with a cut of (%g,%g)->(%g,%g).", + startCol[n],startRow[n],endCol[n],endRow[n]); + errorFlag = true; + } + psErr* err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + diag("psImageCut did not generate proper error message."); + errorFlag = true; + } + psFree(err); + } + ok(!errorFlag, "psImageCut() produced the correct data values"); + } + + + // Following should be an error (NULL image) + // XXX: Verify error + result = psImageCut(result, + cols,rows, + NULL, + mask,1, + psRegionSet(startCol[0], endCol[0], startRow[0], endRow[0]), + length, + PS_INTERPOLATE_FLAT); + ok(result == NULL, "psImageCut did return NULL given NULL image"); + psErr* err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psImageCut did generate proper error message given NULL image"); + psFree(err); + + // Following should be an error (length=0) + // XXX: Verify error + result = psImageCut(result, + cols,rows, + image, + mask,1, + psRegionSet(startCol[0], endCol[0], startRow[0], endRow[0]), + 0, + PS_INTERPOLATE_FLAT); + ok(result == NULL, "psImageCut did return NULL given length=0"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageCut did generate proper error message given length=0"); + psFree(err); + + psFree(result); + psFree(image); + psFree(mask); + psFree(rows); + psFree(cols); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRadialCut() + { + psMemId id = psMemGetId(); + psS32 c = 300; + psS32 r = 200; + psS32 centerX = c/2; + psS32 centerY = r/2; + psErr* err = NULL; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + psImage* mask = psImageAlloc(c,r,PS_TYPE_MASK); + for (psS32 row = 0; row < image->numRows; row++) { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = sqrtf((col-centerX)*(col-centerX)+(row-centerY)*(row-centerY)); + if ((row & 0x0F) == 0) { + mask->data.PS_TYPE_MASK_DATA[row][col] = 1; + } else { + mask->data.PS_TYPE_MASK_DATA[row][col] = 0; + } + } + } + + psStats* stat = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector* radii = psVectorAlloc(10,PS_TYPE_F32); + for (psS32 i=0; i < 10; i++) { + radii->data.F32[i] = 10+i*10; + radii->n++; + } + + bool errorFlag = false; + psVector* result = NULL; + ok(false, "Skipping psImageRadialCut() test because of bugs"); + if (0) { + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,stat); + ok(result != NULL, "psImageRadialCut returned non-NULL"); + ok(result->type.type == PS_TYPE_F64, "psImageRadialCut produced the correct type"); + for (psS32 i=0; i < 9; i++) { + if (fabs(result->data.F64[i] - (15.0+i*10)) > 1) { + diag("Result was not as expected for radii #%d (%g, expected %d +/- 1)", + result->data.F64[i], (15.0+i*10) ); + errorFlag = true; + } + } + ok(!errorFlag, "psImageRadialCut() produced the correct data values"); + } + + // again, but without mask + psVector* orig = result; + ok(false, "Skipping psImageRadialCut() test because of bugs"); + if (0) { + result = psImageRadialCut(result,image,NULL,1,centerX,centerY,radii,stat); + ok(result != NULL, "psImageRadialCut returned non-NULL"); + ok(result == orig, "psImageRadialCut recycle output parameter"); + + errorFlag = false; + for (psS32 i=0; i < 9; i++) { + if (fabs(result->data.F64[i] - (15.0+i*10)) > 1) { + diag("Result was not as expected for radii #%d (%g, expected %d +/- 1)", + result->data.F64[i], (15.0+i*10) ); + errorFlag = true; + } + } + ok(!errorFlag, "psImageRadialCut() produced the correct data values"); + } + + + // NULL input image... + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,NULL,NULL,1,centerX,centerY,radii,stat); + ok(result == NULL, "psImageRadialCut returned NULL with NULL input"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // NULL input radii... + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image,mask,1,centerX,centerY,NULL,stat); + ok(result == NULL, "psImageRadialCut returned NULL with NULL input radii"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // NULL input stat... + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,NULL); + ok(result == NULL, "psImageRadialCut returned NULL with NULL input stats"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // Bad center X + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image,mask,1, + c+1,centerY,radii,stat); + ok(result == NULL, "psImageRadialCut returned NULL with bad center X"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // Bad center Y + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image,mask,1, + centerX,r+1,radii,stat); + ok(result == NULL, "psImageRadialCut returned NULL with bad center Y"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // Bad mask type (N.B., swapped image/mask to do this) + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,mask,image,1, + centerX,r+1,radii,stat); + ok(result == NULL, "psImageRadialCut returned NULL with bad mask type"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_TYPE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // Bad mask size + psImage* mask2 = psImageAlloc(c/2,r/2,PS_TYPE_MASK); + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image, mask2, 1, + centerX,centerY,radii,stat); + psFree(mask2); + ok(result == NULL, "psImageRadialCut returned NULL with bad mask size"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_SIZE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // Bad radii size + psVector* radii2 = psVectorAlloc(1,PS_TYPE_MASK); + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image, mask, 1, + centerX,centerY,radii2,stat); + psFree(radii2); + ok(result == NULL, "psImageRadialCut returned NULL with bad radii size"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_SIZE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + + // bad input stat option... + stat->options = 0; + // Following should be an error + // XXX: Verify error + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,stat); + stat->options = PS_STAT_SAMPLE_MEAN; + ok(result == NULL, "psImageRadialCut returned NULL with bad input stat option"); + err = psErrorLast(); + ok(err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageRadialCut did generate proper error message"); + psFree(err); + + psFree(image); + psFree(mask); + psFree(radii); + psFree(stat); + psFree(result); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColError() + { + psMemId id = psMemGetId(); + psImage *image = NULL; + psVector *out = NULL; + int num = 0; + + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with NULL input image"); + + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImagecol() returned NULL with NULL input image"); + + image = psImageAlloc(3, 3, PS_TYPE_F64); + + + //Test for unallowed row0. + *(psS32*)&(image->row0) = -1; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with unallowed row0"); + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL with unallowed row0"); + + + //Test for unallowed col0. + *(psS32*)&(image->row0) = 5; + *(psS32*)&(image->col0) = -1; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with unallowed col0"); + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL with unallowed col0"); + + + //Test for unallowed numRows + *(psS32*)&(image->col0) = 10; + *(int*)&(image->numRows) = -1; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with unallowed numRows"); + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL with unallowed numRows"); + + + //Test for unallowed numCols + *(int*)&(image->numRows) = 3; + *(int*)&(image->numCols) = -1; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with unallowed numCols"); + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL with unallowed numCols"); + + + //Test for unallowed row/col number specified. + *(int*)&(image->numCols) = 3; + num = 8; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL with unallowed row/col number"); + num = 13; + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL with unallowed row/col number"); + + + num = 3; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL"); + num = 8; + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL"); + + + num = -10; + // Following should generate error message(for row) + // XXX: Verify error + out = psImageRow(NULL, image, num); + ok(out == NULL, "psImageRow() returned NULL"); + num = -14; + // Following should generate error message(for col) + // XXX: Verify error + out = psImageCol(NULL, image, num); + ok(out == NULL, "psImageCol() returned NULL"); + + + //Test valid cases. + image->col0 = 10; + image->row0 = 5; + *(int*)&(image->numRows) = 3; + *(int*)&(image->numCols) = 3; + image->data.F64[0][0] = 666.666; + image->data.F64[1][0] = 66.6; + image->data.F64[2][0] = 6.66; + image->data.F64[0][1] = 6.6; + image->data.F64[1][1] = 6.666; + image->data.F64[2][1] = 66.666; + image->data.F64[0][2] = 666.6; + image->data.F64[1][2] = 666.66; + image->data.F64[2][2] = 66.66; + num = 7; + out = psImageRow(out, image, num); + + + ok(out != NULL, "psImageRow returned non-NULL"); + psFree(out); + out = NULL; + num = 11; + out = psImageCol(NULL, image, num); + ok(out != NULL, "psImageCol returned non-NULL"); + psFree(out); + out = NULL; + + + num = -3; + out = psImageRow(out, image, num); + ok(out != NULL, "psImageRow returned non-NULL"); + psFree(out); + out = NULL; + + + num = -1; + out = psImageCol(NULL, image, num); + ok(out != NULL, "psImageCol returned non-NULL"); + psFree(out); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColF64() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_F64); + rowcol = psVectorAlloc(3, PS_TYPE_F64); + + image->data.F64[0][0] = 666.666; + image->data.F64[1][0] = 66.6; + image->data.F64[2][0] = 6.66; + image->data.F64[0][1] = 6.6; + image->data.F64[1][1] = 6.666; + image->data.F64[2][1] = 66.666; + image->data.F64[0][2] = 666.6; + image->data.F64[1][2] = 666.66; + image->data.F64[2][2] = 66.66; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + rowcol->data.F64[0] = 1.1; + rowcol->data.F64[2] = 2.2; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + double test1, test2; + double TOLTST = .001; + test1 = fabs(rowcol->data.F64[0]-6.6); + test2 = fabs(rowcol->data.F64[2]-66.666); + ok((test1<=TOLTST) && (test2<=TOLTST), "psImageCol returned correct values"); + + rowcol = psImageRow(rowcol, image, 1); + test1 = fabs(rowcol->data.F64[0]-66.6); + test2 = fabs(rowcol->data.F64[2]-666.66); + ok(!( (test1>TOLTST) || (test2>TOLTST)), + "psImageRow returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColF32() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + float test1; + float test2; + float TOLTST = .01; + + image = psImageAlloc(3, 3, PS_TYPE_F32); + rowcol = psVectorAlloc(3, PS_TYPE_F32); + rowcol->n = rowcol->nalloc; + + image->data.F32[0][0] = 666.666; + image->data.F32[1][0] = 66.6; + image->data.F32[2][0] = 6.66; + image->data.F32[0][1] = 6.6; + image->data.F32[1][1] = 6.666; + image->data.F32[2][1] = 66.666; + image->data.F32[0][2] = 666.6; + image->data.F32[1][2] = 666.66; + image->data.F32[2][2] = 66.66; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + rowcol->data.F32[0] = 1.1; + rowcol->data.F32[2] = 2.2; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + test1 = fabs(rowcol->data.F32[0]-6.6); + test2 = fabs(rowcol->data.F32[2]-66.666); + ok((test1<=TOLTST) && (test2<=TOLTST), "psImageCol returned correct values"); + + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColU64() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U64); + rowcol = psVectorAlloc(3, PS_TYPE_U64); + + image->data.U64[0][0] = 1; + image->data.U64[1][0] = 2; + image->data.U64[2][0] = 3; + image->data.U64[0][1] = 4; + image->data.U64[1][1] = 5; + image->data.U64[2][1] = 6; + image->data.U64[0][2] = 7; + image->data.U64[1][2] = 8; + image->data.U64[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok((rowcol->data.U64[0] == 4) && (rowcol->data.U64[2] == 6), + "psImageCol returned correct values (%u %u)", + rowcol->data.U64[0], rowcol->data.U64[2]); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColU32() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U32); + rowcol = psVectorAlloc(3, PS_TYPE_U32); + + image->data.U32[0][0] = 1; + image->data.U32[1][0] = 2; + image->data.U32[2][0] = 3; + image->data.U32[0][1] = 4; + image->data.U32[1][1] = 5; + image->data.U32[2][1] = 6; + image->data.U32[0][2] = 7; + image->data.U32[1][2] = 8; + image->data.U32[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.U32[0] == 4 && rowcol->data.U32[2] == 6, + "psImageCol returned correct values (%d %d)", + rowcol->data.U32[0] == 4, rowcol->data.U32[2]); + + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColS32() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S32); + rowcol = psVectorAlloc(3, PS_TYPE_S32); + + image->data.S32[0][0] = 1; + image->data.S32[1][0] = 2; + image->data.S32[2][0] = 3; + image->data.S32[0][1] = 4; + image->data.S32[1][1] = 5; + image->data.S32[2][1] = 6; + image->data.S32[0][2] = 7; + image->data.S32[1][2] = 8; + image->data.S32[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.S32[0] == 4 && rowcol->data.S32[2] == 6, + "psImageCol returned correct values (%d %d)", + rowcol->data.S32[0], rowcol->data.S32[2]); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColS64() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S64); + rowcol = psVectorAlloc(3, PS_TYPE_S64); + + image->data.S64[0][0] = 1; + image->data.S64[1][0] = 2; + image->data.S64[2][0] = 3; + image->data.S64[0][1] = 4; + image->data.S64[1][1] = 5; + image->data.S64[2][1] = 6; + image->data.S64[0][2] = 7; + image->data.S64[1][2] = 8; + image->data.S64[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.S64[0] == 4 && rowcol->data.S64[2] == 6, + "psImageCol returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColS16() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S16); + rowcol = psVectorAlloc(3, PS_TYPE_S16); + + image->data.S16[0][0] = 1; + image->data.S16[1][0] = 2; + image->data.S16[2][0] = 3; + image->data.S16[0][1] = 4; + image->data.S16[1][1] = 5; + image->data.S16[2][1] = 6; + image->data.S16[0][2] = 7; + image->data.S16[1][2] = 8; + image->data.S16[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.S16[0] == 4 && rowcol->data.S16[2] == 6, + "psImageRow returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColU16() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U16); + rowcol = psVectorAlloc(3, PS_TYPE_U16); + + image->data.U16[0][0] = 1; + image->data.U16[1][0] = 2; + image->data.U16[2][0] = 3; + image->data.U16[0][1] = 4; + image->data.U16[1][1] = 5; + image->data.U16[2][1] = 6; + image->data.U16[0][2] = 7; + image->data.U16[1][2] = 8; + image->data.U16[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.U16[0] == 4 && rowcol->data.U16[2] == 6, + "psImageRow returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColU8() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U8); + rowcol = psVectorAlloc(3, PS_TYPE_U8); + + image->data.U8[0][0] = 1; + image->data.U8[1][0] = 2; + image->data.U8[2][0] = 3; + image->data.U8[0][1] = 4; + image->data.U8[1][1] = 5; + image->data.U8[2][1] = 6; + image->data.U8[0][2] = 7; + image->data.U8[1][2] = 8; + image->data.U8[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.U8[0] == 4 && rowcol->data.U8[2] == 6, + "psImageRow returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageRowColS8() + { + psMemId id = psMemGetId(); + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S8); + rowcol = psVectorAlloc(3, PS_TYPE_S8); + + image->data.S8[0][0] = 1; + image->data.S8[1][0] = 2; + image->data.S8[2][0] = 3; + image->data.S8[0][1] = 4; + image->data.S8[1][1] = 5; + image->data.S8[2][1] = 6; + image->data.S8[0][2] = 7; + image->data.S8[1][2] = 8; + image->data.S8[2][2] = 9; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + ok(empty == NULL, "psImageCol returned NULL for NULL image input"); + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + ok(empty == NULL, "psImageRow returned NULL for out of range row input"); + + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + ok(rowcol->data.S8[0] == 4 && rowcol->data.S8[2] == 6, + "psImageRow returned correct values"); + psFree(rowcol); + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +/* HERE +*/ +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImagePixelManip.c (revision 12167) @@ -0,0 +1,706 @@ +/** @file tst_psImageManip.c + * + * @brief Contains the tests for psImageManip.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 23:56:12 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(85); + + // testImageClip() + { + psMemId id = psMemGetId(); + + //psImageClip shall limit the minimum and maximum data value within a psImage structure + + // psImageClip shall limit the minimum and maximum data value within a + // psImage structure to a specified min and max value. + // + // Verify the returned integer is equal to the number of pixels clipped, + // if the input psImage structure contains known values and input parameters + // min and max have know values. + // + // Verify the psImage structure specified by the input parameter input is + // modified to contain the expected values, if the input psImage structure + // contains known values, min and max are specified and vmin and vmax + // parameters are known. + // + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter psImage structure + // pointer is null. + // + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter min is larger than max. + // create image + #define testImageClipByType(datatype) \ + { \ + psU32 c = 128; \ + psU32 r = 256; \ + psF64 min; \ + psF64 max; \ + psS32 numClipped = 0; \ + psS32 retVal; \ + psMemId id = psMemGetId(); \ + psImage *img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (psU32 row=0;rowdata.datatype[row]; \ + for (psU32 col=0;coldata.datatype[row]; \ + for (psU32 col=0;col max) { \ + numClipped++; \ + value = PS_MAX_##datatype; \ + } \ + if (fabsf(imgRow[col]-value) > FLT_EPSILON) { \ + diag("Pixel value is not as expected (%g vs %g) at %u,%u", \ + (psF64)imgRow[col],(psF64)value,col,row); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageClip() produced the correct data values"); \ + ok(retVal == numClipped, "Got the expected number of clips"); \ + psFree(img); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + #define testImageClipByComplexType(datatype) \ + { \ + psU32 c = 128; \ + psU32 r = 256; \ + psF64 min; \ + psF64 max; \ + psS32 numClipped = 0; \ + psS32 retVal; \ + psMemId id = psMemGetId(); \ + psImage *img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (psU32 row=0;rowdata.datatype[row]; \ + for (psU32 col=0;coldata.datatype[row]; \ + for (psU32 col=0;col max) { \ + numClipped++; \ + value = -2.0f; \ + } \ + if (fabsf(creal(imgRow[col])-creal(value)) > FLT_EPSILON || \ + fabsf(cimag(imgRow[col])-cimag(value)) > FLT_EPSILON) { \ + diag("Pixel value is not as expected (%.2f+%.2fi vs %.2f+%.2fi) at %u,%u", \ + creal(imgRow[col]),cimag(imgRow[col]),creal(value),cimag(value),col,row); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageClip() produced the correct data values"); \ + ok(retVal == numClipped, "Got the expected number of clips"); \ + psFree(img); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + testImageClipByType(F64); + testImageClipByType(F32); + testImageClipByType(S32); + testImageClipByType(S16); + testImageClipByType(S8); + testImageClipByType(U32); + testImageClipByType(U16); + testImageClipByType(U8); + testImageClipByComplexType(C32); + testImageClipByComplexType(C64); + + + psF64 min=0.0; + psF64 max=0.0; + psS32 retVal; + psImage *img = NULL; + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter psImage structure + // pointer is null. + retVal = psImageClip(NULL,min,-1.0f,max,-2.0f); + ok(retVal == 0, "Expected zero return for clips of a NULL image"); + + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter min is larger than max. + // Following should be an error (maxdata.datatype[row]; \ + for (unsigned col=0;coldata.datatype[row]; \ + for (unsigned col=0;col FLT_EPSILON) { \ + diag("Pixel value is not as expected (%f vs %f) at %d,%d", \ + imgRow[col],value,col,row); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageClip() produced the correct data values"); \ + ok(retVal == numClipped, "Got the expected number of clips"); \ + psFree(img); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + testImageClipNaNByType(F32); + testImageClipNaNByType(F64); + testImageClipNaNByType(C32); + testImageClipNaNByType(C64); + + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter psImage structure + // pointer is null. + retVal = psImageClipNaN(NULL,-1.0f); + ok(retVal == 0, "Expected zero return for clips of a NULL image"); + + // Verify program execution doesn't stop if the input image type is something + // other than F32, F64, C32, C64. + img = psImageAlloc(c,r,PS_TYPE_S32); + // Following should be an error (incorrect type) + // XXX: Verify error + retVal = psImageClipNaN(img,2.0f); + ok(retVal == 0, "Expected zero return for clip of incorrect image type"); + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageClipComplexRegion() + { + psMemId id = psMemGetId(); + psImage* img = NULL; + psU32 c = 1024; + psU32 r = 2048; + psS32 numClipped = 0; + psS32 retVal; + + // psImageClipNaN shall modified pixel values of NaN with a specified value + + // 1. Create a complex image with a wide range of complex values + // + // 2. call psImageClipComplexRegion with min and max where there is at least + // 2 pixels in the image above) that is: + // a) real(p) < real(min) && complex(p) < complex(min), + // b) real(p) < real(min) && complex(min) < complex(p) < complex(max) + // c) real(min) < real(p) < real(max) && complex(p) < complex(min) + // d) real(min) < real(p) < real(max) && complex(min) < complex(p) < complex(max) + // e) real(p) > real(max) && complex(min) < complex(p) < complex(max) + // f) real(pmin) < real(p) < real(max) && complex(p) > complex(max) + // g) real(p) > real(max) && complex(p) > complex(max) + // h) real(p) < real(min) && complex(p) > complex(max) + // i) real(p) > real(max) && complex(p) < complex(min) + // + // 3. verify that All pixels in case (a), (b), and (c) have the value vmin + // + // 4. verify that all pixels in case (d) are unchanged from input + // + // 5. verify that all pixels in case (e), (f), (g), (h), and (i) have the + // value vmax + #define testImageClipComplexByType(datatype,MIN,MAX) \ + { \ + psMemId id = psMemGetId(); \ + img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (unsigned row=0;rowdata.datatype[row]; \ + for (unsigned col=0;coldata.datatype[row]; \ + for (unsigned col=0;col creal(MAX)) || (col > cimag(MAX)) ) { \ + numClipped++; \ + value = -2.0-2.0*I; \ + } else if ((row < creal(MIN)) || (col < cimag(MIN)) ) { \ + numClipped++; \ + value = -1.0-1.0*I; \ + } \ + if (cabs(imgRow[col]-value) > FLT_EPSILON) { \ + diag("Pixel value is not as expected (%g%+gi vs %g%+gi) at %d,%d", \ + creal(imgRow[col]),cimag(imgRow[col]),creal(value),cimag(value),col,row); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageClip() produced the correct data values"); \ + ok(retVal == numClipped, "Got the expected number of clips"); \ + psFree(img); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + complex double min = ((double)r)/5.0+I*((double)c)/4.0; + complex double max = ((double)r)/3.0+I*((double)c)/2.0; + + // Testing clipping at %g%+gi to %g%+gi for psC32, creal(min),cimag(min),creal(max),cimag(max)); + + testImageClipComplexByType(C32,min,max); + + // Testing clipping at %g%+gi to %g%+gi for psC64, creal(min),cimag(min),creal(max),cimag(max)); + testImageClipComplexByType(C64,min,max); + + // 6. Call psImageClipComplexRegion with NULL input parameter; should error + // but not stop execution. + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(NULL,0,0,0,0); + ok(retVal == 0, "Expected zero return for clips of a NULL image"); + + img = psImageAlloc(c,r,PS_TYPE_C32); + for (unsigned row=0;rowdata.C32[row]; + for (unsigned col=0;col max; should error and return 0, + // but not stop execution + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img,10.0+I*1.0,-1.0,5.0+5.0*I,-2.0); + ok(retVal == 0, "Expected zero return for creal(min)>creal(max)"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img,1.0+I*10.0,-1.0,5.0+5.0*I,-2.0); + ok(retVal == 0, "Expected zero return for cimag(min)>cimag(max)"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img,10.0+I*10.0,-1.0,5.0+5.0*I,-2.0); + ok(retVal == 0, "Expected zero return for min>max"); + + // 8. Call psImageClipComplexRegion with the follow vmin/vmax values; each + // should error and return 0, but not stop execution + // a) vmin < datatype region's minimum + // b) vmax < datatype region's minimum + // c) vmin > datatype region's maximum + // d) vmax > datatype region's maximum + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + -2.0*(double)FLT_MAX, + 5.0+5.0*I, + 0.0); + ok(retVal == 0, "Expected zero return for vmin not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 2.0*(double)FLT_MAX, + 5.0+5.0*I, + 0.0); + ok(retVal == 0, "Expected zero return for vmin not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + FLT_EPSILON-2.0*(double)FLT_MAX*I, + 5.0+5.0*I, + 0.0); + ok(retVal == 0, "Expected zero return for vmin not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + FLT_EPSILON+2.0*(double)FLT_MAX*I, + 5.0+5.0*I, + 0.0); + ok(retVal == 0, "Expected zero return for vmin not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + -2.0*(double)FLT_MAX); + ok(retVal == 0, "Expected zero return for vmax not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + 2.0*(double)FLT_MAX); + ok(retVal == 0, "Expected zero return for vmax not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + FLT_EPSILON-2.0*(double)FLT_MAX*I); + ok(retVal == 0, "Expected zero return for vmax not in datatype range"); + + // Following should be an error + // XXX: Verify error + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + FLT_EPSILON+2.0*(double)FLT_MAX*I); + ok(retVal == 0, "Expected zero return for vmax not in datatype range"); + + // now check if vmin > vmax is OK + for (unsigned row=0;rowdata.C32[row]; + for (unsigned col=0;col vmax"); + psFree(img); + img = NULL; + + // 9. Call psImageClipComplexRegion with the max value out of datatype's + // range; should clip as expected (see step 1-5). Repeat with min value + // out of datatype's range. + + testImageClipComplexByType(C32,-(double)FLT_MAX*2.0-I*(double)FLT_MAX*2.0,10.0+I*10.0); + testImageClipComplexByType(C32,10.0+I*10.0,(double)FLT_MAX*2.0+I*(double)FLT_MAX*2.0); + + // Verify program execution doesn't stop if the input image type is something + // other than C32, C64. + img = psImageAlloc(c,r,PS_TYPE_S32); + // Following should be an error (incorrect type) + // XXX: Verify error + retVal = psImageClipComplexRegion(img,2.0,10.0,5.0,0.0); + ok(retVal == 0, "Expected zero return for clip of incorrect image type"); + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testImageOverlay() + { + psMemId id = psMemGetId(); + psImage* img = NULL; + psImage* img2 = NULL; + psImage* img3 = NULL; + psImage* img4 = NULL; + psU32 c = 128; + psU32 r = 256; + psS32 retVal; + + // psImageSectionOverlay shall modified pixel values in a psImage structure to + // be equal to the value of the originaldata and an overlay image with a + // specified operation. Valid operations include =, +, -, *, /. + // + // Verify the returned integer is zero + // and the input parameter psImage structure is modified at the specified + // location and range with the given overlay image and the specified + // function. Cases should include all the valid operations. Comparison of + // expected values should include a delta to allow for testing on + // different platforms. + #define testOverlayTypeOP(DATATYPE,OP,OPSTRING) \ + { \ + psMemId id = psMemGetId(); \ + img = psImageAlloc(c,r,PS_TYPE_##DATATYPE); \ + for (unsigned row=0;rowdata.DATATYPE[row]; \ + for (unsigned col=0;coldata.DATATYPE[row]; \ + for (unsigned col=0;coldata.DATATYPE[row]; \ + ps##DATATYPE* img2Row = img2->data.DATATYPE[row]; \ + for (unsigned col=0;col= r/2+r/4 || col < c/4 || col >= c/2+c/4)) { \ + val OP 2.0; \ + } \ + if (fabsf(imgRow[col] - val) > FLT_EPSILON) { \ + diag("Value incorrect at %d,%d (%.2f vs %.2f for %s)", \ + col,row,imgRow[col],val,OPSTRING); \ + errorFlag = true; \ + } \ + if (row < r/2 && col < c/2 && fabsf(img2Row[col] - 2.0) > FLT_EPSILON) { \ + diag("Overlay modified at %d,%d (%.2f for %s)", \ + col,row,img2Row[col],OPSTRING); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageOverlaySection() produced the correct data values"); \ + psFree(img); \ + psFree(img2); \ + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); \ + } + + #define testOverlayType(DATATYPE) \ + testOverlayTypeOP(DATATYPE,+=,"+"); \ + testOverlayTypeOP(DATATYPE,-=,"-"); \ + testOverlayTypeOP(DATATYPE,*=,"*");\ + testOverlayTypeOP(DATATYPE,/=,"/");\ + testOverlayTypeOP(DATATYPE,=,"="); + + + // testOverlayType(C64); + // testOverlayType(C32); + // testOverlayType(F64); + // testOverlayType(F32); + // testOverlayType(S16); + // testOverlayType(S8); + // testOverlayType(U16); + // testOverlayType(U8); + + // Verify the returned integer is equal to non-zero and the input psImage structure + // is unmodified, if the overlay specified is not within the data range of the + // input psImage structure. + img = psImageAlloc(c,r,PS_TYPE_F32); + for (unsigned row=0;rowdata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.S64[row]; + for (unsigned col=0;coldata.S64[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;col +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(39); + + diag("psImageShift() tests"); + + // tests using BILINEAR interpolation + { + psMemId id = psMemGetId(); + + diag("shift a delta function by an integer offset"); + + // generate simple image (delta function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // use delta function as input test image + image->data.F32[10][10] = 1; + + // integer shifts should be exact + psImage *shift = psImageShift (NULL, image, 1.0, 1.0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (shift->data.F32[10][10], 0.0, "point 10,10 should be 0.0 : %f", shift->data.F32[10][10]); + ok_float (shift->data.F32[10][11], 0.0, "point 10,11 should be 0.0 : %f", shift->data.F32[10][11]); + ok_float (shift->data.F32[10][12], 0.0, "point 10,12 should be 0.0 : %f", shift->data.F32[10][12]); + ok_float (shift->data.F32[11][10], 0.0, "point 11,10 should be 0.0 : %f", shift->data.F32[11][10]); + ok_float (shift->data.F32[11][11], 1.0, "point 11,11 should be 1.0 : %f", shift->data.F32[11][11]); + ok_float (shift->data.F32[11][12], 0.0, "point 11,12 should be 0.0 : %f", shift->data.F32[11][12]); + ok_float (shift->data.F32[12][10], 0.0, "point 12,10 should be 0.0 : %f", shift->data.F32[12][10]); + ok_float (shift->data.F32[12][11], 0.0, "point 12,11 should be 0.0 : %f", shift->data.F32[12][11]); + ok_float (shift->data.F32[12][12], 0.0, "point 12,12 should be 0.0 : %f", shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // tests using BILINEAR interpolation + { + psMemId id = psMemGetId(); + + diag("shift a delta function by an fractional pixel offset"); + + // generate simple image (delta function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // XXX is this needed? + psImageInit (image, 0.0); + + // use delta function as input test image + image->data.F32[10][10] = 1; + + // fractional shifts introduce smoothing, + psImage *shift = psImageShift (NULL, image, 0.2, 0.4, 0.0, PS_INTERPOLATE_BILINEAR); + diag("these require tolerance of 4 epsilon (why?)"); + ok_float_tol (shift->data.F32[10][10], 0.8*0.6, 4*FLT_EPSILON, "point 10,10 should be %f : %f", 0.8*0.6, shift->data.F32[10][10]); + ok_float_tol (shift->data.F32[10][11], 0.2*0.6, 4*FLT_EPSILON, "point 10,11 should be %f : %f", 0.2*0.6, shift->data.F32[10][11]); + ok_float_tol (shift->data.F32[10][12], 0.0, 4*FLT_EPSILON, "point 10,12 should be %f : %f", 0.0, shift->data.F32[10][12]); + ok_float_tol (shift->data.F32[11][10], 0.8*0.4, 4*FLT_EPSILON, "point 11,10 should be %f : %f", 0.8*0.4, shift->data.F32[11][10]); + ok_float_tol (shift->data.F32[11][11], 0.2*0.4, 4*FLT_EPSILON, "point 11,11 should be %f : %f", 0.2*0.4, shift->data.F32[11][11]); + ok_float_tol (shift->data.F32[11][12], 0.0, 4*FLT_EPSILON, "point 11,12 should be %f : %f", 0.0, shift->data.F32[11][12]); + ok_float_tol (shift->data.F32[12][10], 0.0, 4*FLT_EPSILON, "point 12,10 should be %f : %f", 0.0, shift->data.F32[12][10]); + ok_float_tol (shift->data.F32[12][11], 0.0, 4*FLT_EPSILON, "point 12,11 should be %f : %f", 0.0, shift->data.F32[12][11]); + ok_float_tol (shift->data.F32[12][12], 0.0, 4*FLT_EPSILON, "point 12,12 should be %f : %f", 0.0, shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test by measuring gaussian centroid before and after + // using BILINEAR interpolation + { + psMemId id = psMemGetId(); + + diag("shift a gaussian and measure centroid"); + + // generate simple image (gauss function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // build a simple gaussian (16,16),(2,1) as input test image + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + float z = PS_SQR(i - 16.0)/8.0 + PS_SQR(j - 16.0)/2.0; + image->data.F32[j][i] = exp(-z); + } + } + + // measure centroid of unshifted gaussian (should be 16.0,16.0) + float xo = 0.0; + float yo = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.0, xo); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "y-centroid should be %f : %f", 16.0, yo); + + // fractional shifts introduce smoothing, + psImage *shift = psImageShift (NULL, image, 1.2, -1.2, 0.0, PS_INTERPOLATE_BILINEAR); + + // measure centroid of shifted gaussian (should be 17.2,14.8) + xo = yo = no = 0.0; + for (int j = 0; j < shift->numRows; j++) + { + for (int i = 0; i < shift->numCols; i++) { + xo += i*shift->data.F32[j][i]; + yo += j*shift->data.F32[j][i]; + no += shift->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 17.2, 100*FLT_EPSILON, "x-centroid should be %f : %f", 17.2, xo); + ok_float_tol (yo, 14.8, 100*FLT_EPSILON, "y-centroid should be %f : %f", 14.8, yo); + + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // tests using BICUBE interpolation + { + psMemId id = psMemGetId(); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // use delta function as input test image + image->data.F32[11][11] = 1; + + // fractional shifts introduce smoothing, + psImage *shift = psImageShift (NULL, image, 0.2, 0.4, 0.0, PS_INTERPOLATE_BICUBE); + ok_float_tol (shift->data.F32[10][10], -0.157778, 4*FLT_EPSILON, "point 10,10 should be %f : %f", -0.157778, shift->data.F32[10][10]); + ok_float_tol (shift->data.F32[10][11], +0.168889, 4*FLT_EPSILON, "point 10,11 should be %f : %f", +0.168889, shift->data.F32[10][11]); + ok_float_tol (shift->data.F32[10][12], -0.131111, 4*FLT_EPSILON, "point 10,12 should be %f : %f", -0.131111, shift->data.F32[10][12]); + ok_float_tol (shift->data.F32[11][10], +0.142221, 4*FLT_EPSILON, "point 11,10 should be %f : %f", +0.142221, shift->data.F32[11][10]); + ok_float_tol (shift->data.F32[11][11], +0.488884, 4*FLT_EPSILON, "point 11,11 should be %f : %f", +0.488884, shift->data.F32[11][11]); + ok_float_tol (shift->data.F32[11][12], +0.208878, 4*FLT_EPSILON, "point 11,12 should be %f : %f", +0.208878, shift->data.F32[11][12]); + ok_float_tol (shift->data.F32[12][10], -0.064500, 4*FLT_EPSILON, "point 12,10 should be %f : %f", -0.064500, shift->data.F32[12][10]); + ok_float_tol (shift->data.F32[12][11], +0.302066, 4*FLT_EPSILON, "point 12,11 should be %f : %f", +0.302066, shift->data.F32[12][11]); + ok_float_tol (shift->data.F32[12][12], +0.041884, 4*FLT_EPSILON, "point 12,12 should be %f : %f", +0.041884, shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageShiftKernel.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageShiftKernel.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageShiftKernel.c (revision 12167) @@ -0,0 +1,353 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(34); + + diag("psImageShiftKernel() tests"); + + // tests using BILINEAR interpolation + // skip until we implement the integer shift portion + if (0) { + psMemId id = psMemGetId(); + + diag("shift a delta function by an integer offset"); + + // generate simple image (delta function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // use delta function as input test image + image->data.F32[10][10] = 1; + + // integer shifts should be exact + psImage *shift = psImageShiftKernel (NULL, image, 1.0, 1.0, PS_INTERPOLATE_BILINEAR); + ok_float (shift->data.F32[10][10], 0.0, "point 10,10 should be 0.0 : %f", shift->data.F32[10][10]); + ok_float (shift->data.F32[10][11], 0.0, "point 10,11 should be 0.0 : %f", shift->data.F32[10][11]); + ok_float (shift->data.F32[10][12], 0.0, "point 10,12 should be 0.0 : %f", shift->data.F32[10][12]); + ok_float (shift->data.F32[11][10], 0.0, "point 11,10 should be 0.0 : %f", shift->data.F32[11][10]); + ok_float (shift->data.F32[11][11], 1.0, "point 11,11 should be 1.0 : %f", shift->data.F32[11][11]); + ok_float (shift->data.F32[11][12], 0.0, "point 11,12 should be 0.0 : %f", shift->data.F32[11][12]); + ok_float (shift->data.F32[12][10], 0.0, "point 12,10 should be 0.0 : %f", shift->data.F32[12][10]); + ok_float (shift->data.F32[12][11], 0.0, "point 12,11 should be 0.0 : %f", shift->data.F32[12][11]); + ok_float (shift->data.F32[12][12], 0.0, "point 12,12 should be 0.0 : %f", shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // tests using BILINEAR interpolation + // XXX skip until we implement BILINEAR + if (0) { + psMemId id = psMemGetId(); + + diag("shift a delta function by an fractional pixel offset"); + + // generate simple image (delta function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // XXX is this needed? + psImageInit (image, 0.0); + + // use delta function as input test image + image->data.F32[10][10] = 1; + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 0.2, 0.4, PS_INTERPOLATE_BICUBE); + diag("these require tolerance of 4 epsilon (why?)"); + ok_float_tol (shift->data.F32[10][10], 0.8*0.6, 4*FLT_EPSILON, "point 10,10 should be %f : %f", 0.8*0.6, shift->data.F32[10][10]); + ok_float_tol (shift->data.F32[10][11], 0.2*0.6, 4*FLT_EPSILON, "point 10,11 should be %f : %f", 0.2*0.6, shift->data.F32[10][11]); + ok_float_tol (shift->data.F32[10][12], 0.0, 4*FLT_EPSILON, "point 10,12 should be %f : %f", 0.0, shift->data.F32[10][12]); + ok_float_tol (shift->data.F32[11][10], 0.8*0.4, 4*FLT_EPSILON, "point 11,10 should be %f : %f", 0.8*0.4, shift->data.F32[11][10]); + ok_float_tol (shift->data.F32[11][11], 0.2*0.4, 4*FLT_EPSILON, "point 11,11 should be %f : %f", 0.2*0.4, shift->data.F32[11][11]); + ok_float_tol (shift->data.F32[11][12], 0.0, 4*FLT_EPSILON, "point 11,12 should be %f : %f", 0.0, shift->data.F32[11][12]); + ok_float_tol (shift->data.F32[12][10], 0.0, 4*FLT_EPSILON, "point 12,10 should be %f : %f", 0.0, shift->data.F32[12][10]); + ok_float_tol (shift->data.F32[12][11], 0.0, 4*FLT_EPSILON, "point 12,11 should be %f : %f", 0.0, shift->data.F32[12][11]); + ok_float_tol (shift->data.F32[12][12], 0.0, 4*FLT_EPSILON, "point 12,12 should be %f : %f", 0.0, shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test by measuring gaussian centroid before and after + // using BILINEAR interpolation + // XXX skip until we implement BILINEAR + if (0) { + psMemId id = psMemGetId(); + + diag("shift a gaussian and measure centroid"); + + // generate simple image (gauss function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // build a simple gaussian (16,16),(2,1) as input test image + for (int j = 0; j < image->numRows; j++) { + for (int i = 0; i < image->numCols; i++) { + float z = PS_SQR(i - 16.0)/8.0 + PS_SQR(j - 16.0)/2.0; + image->data.F32[j][i] = exp(-z); + } + } + + // measure centroid of unshifted gaussian (should be 16.0,16.0) + float xo = 0.0; + float yo = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.0, xo); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "y-centroid should be %f : %f", 16.0, yo); + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 1.2, -1.2, PS_INTERPOLATE_BILINEAR); + + // measure centroid of shifted gaussian (should be 17.2,14.8) + xo = yo = no = 0.0; + for (int j = 0; j < shift->numRows; j++) { + for (int i = 0; i < shift->numCols; i++) { + xo += i*shift->data.F32[j][i]; + yo += j*shift->data.F32[j][i]; + no += shift->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 17.2, 100*FLT_EPSILON, "x-centroid should be %f : %f", 17.2, xo); + ok_float_tol (yo, 14.8, 100*FLT_EPSILON, "y-centroid should be %f : %f", 14.8, yo); + + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // tests using BICUBE interpolation + { + psMemId id = psMemGetId(); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // use delta function as input test image + image->data.F32[11][11] = 1; + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 0.2, 0.4, PS_INTERPOLATE_BICUBE); + diag ("please check these values: this kernel is very steep and ringy. what is the right BICUBE kernel?"); + ok_float_tol (shift->data.F32[10][10], -1.444445, 4*FLT_EPSILON, "point 10,10 should be %f : %f", -1.444445, shift->data.F32[10][10]); + ok_float_tol (shift->data.F32[10][11], -0.277778, 4*FLT_EPSILON, "point 10,11 should be %f : %f", -0.277778, shift->data.F32[10][11]); + ok_float_tol (shift->data.F32[10][12], -0.777778, 4*FLT_EPSILON, "point 10,12 should be %f : %f", -0.777778, shift->data.F32[10][12]); + ok_float_tol (shift->data.F32[11][10], +0.055556, 4*FLT_EPSILON, "point 11,10 should be %f : %f", +0.055556, shift->data.F32[11][10]); + ok_float_tol (shift->data.F32[11][11], +1.222222, 4*FLT_EPSILON, "point 11,11 should be %f : %f", +1.222222, shift->data.F32[11][11]); + ok_float_tol (shift->data.F32[11][12], +0.722222, 4*FLT_EPSILON, "point 11,12 should be %f : %f", +0.722222, shift->data.F32[11][12]); + ok_float_tol (shift->data.F32[12][10], -0.111111, 4*FLT_EPSILON, "point 12,10 should be %f : %f", -0.111111, shift->data.F32[12][10]); + ok_float_tol (shift->data.F32[12][11], +1.055556, 4*FLT_EPSILON, "point 12,11 should be %f : %f", +1.055556, shift->data.F32[12][11]); + ok_float_tol (shift->data.F32[12][12], +0.555556, 4*FLT_EPSILON, "point 12,12 should be %f : %f", +0.555556, shift->data.F32[12][12]); + + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test by measuring gaussian centroid before and after + // using BICUBE interpolation + { + psMemId id = psMemGetId(); + + diag("shift a gaussian and measure centroid"); + + // generate simple image (gauss function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // build a simple gaussian (16,16),(2,1) as input test image + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + float z = PS_SQR(i - 16.0)/8.0 + PS_SQR(j - 16.0)/2.0; + image->data.F32[j][i] = exp(-z); + } + } + + // measure centroid of unshifted gaussian (should be 16.0,16.0) + float xo = 0.0; + float yo = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.0, xo); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "y-centroid should be %f : %f", 16.0, yo); + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 0.2, -0.2, PS_INTERPOLATE_BICUBE); + + // measure centroid of shifted gaussian (should be 17.2,14.8) + xo = yo = no = 0.0; + for (int j = 0; j < shift->numRows; j++) + { + for (int i = 0; i < shift->numCols; i++) { + xo += i*shift->data.F32[j][i]; + yo += j*shift->data.F32[j][i]; + no += shift->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.2, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.2, xo); + ok_float_tol (yo, 15.8, 100*FLT_EPSILON, "y-centroid should be %f : %f", 15.8, yo); + + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // tests using GAUSS interpolation + { + psMemId id = psMemGetId(); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // use delta function as input test image + image->data.F32[11][11] = 1; + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 0.0, 0.0, PS_INTERPOLATE_GAUSS); + ok_float_tol (shift->data.F32[10][10], -0.157778, 4*FLT_EPSILON, "point 10,10 should be %f : %f", -0.157778, shift->data.F32[10][10]); + ok_float_tol (shift->data.F32[10][11], +0.168889, 4*FLT_EPSILON, "point 10,11 should be %f : %f", +0.168889, shift->data.F32[10][11]); + ok_float_tol (shift->data.F32[10][12], -0.131111, 4*FLT_EPSILON, "point 10,12 should be %f : %f", -0.131111, shift->data.F32[10][12]); + ok_float_tol (shift->data.F32[11][10], +0.142221, 4*FLT_EPSILON, "point 11,10 should be %f : %f", +0.142221, shift->data.F32[11][10]); + ok_float_tol (shift->data.F32[11][11], +0.488884, 4*FLT_EPSILON, "point 11,11 should be %f : %f", +0.488884, shift->data.F32[11][11]); + ok_float_tol (shift->data.F32[11][12], +0.208878, 4*FLT_EPSILON, "point 11,12 should be %f : %f", +0.208878, shift->data.F32[11][12]); + ok_float_tol (shift->data.F32[12][10], -0.064500, 4*FLT_EPSILON, "point 12,10 should be %f : %f", -0.064500, shift->data.F32[12][10]); + ok_float_tol (shift->data.F32[12][11], +0.302066, 4*FLT_EPSILON, "point 12,11 should be %f : %f", +0.302066, shift->data.F32[12][11]); + ok_float_tol (shift->data.F32[12][12], +0.041884, 4*FLT_EPSILON, "point 12,12 should be %f : %f", +0.041884, shift->data.F32[12][12]); + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test by measuring gaussian centroid before and after + // using GAUSS interpolation + { + psMemId id = psMemGetId(); + + diag("shift a gaussian and measure centroid"); + + // generate simple image (gauss function) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + // build a simple gaussian (16,16),(2,1) as input test image + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + float z = PS_SQR(i - 16.0)/8.0 + PS_SQR(j - 16.0)/2.0; + image->data.F32[j][i] = exp(-z); + } + } + + // measure centroid of unshifted gaussian (should be 16.0,16.0) + float xo = 0.0; + float yo = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.0, xo); + ok_float_tol (xo, 16.0, 100*FLT_EPSILON, "y-centroid should be %f : %f", 16.0, yo); + + // fractional shifts introduce smoothing, + psImage *shift = psImageShiftKernel (NULL, image, 0.2, 0.4, PS_INTERPOLATE_GAUSS); + + // measure centroid of shifted gaussian (should be 17.2,14.8) + xo = yo = no = 0.0; + for (int j = 0; j < shift->numRows; j++) + { + for (int i = 0; i < shift->numCols; i++) { + xo += i*shift->data.F32[j][i]; + yo += j*shift->data.F32[j][i]; + no += shift->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + + diag ("these require a tolerance of 100 epsilon"); + ok_float_tol (xo, 16.2, 100*FLT_EPSILON, "x-centroid should be %f : %f", 16.2, xo); + ok_float_tol (yo, 15.8, 100*FLT_EPSILON, "y-centroid should be %f : %f", 15.8, yo); + + psFits *fits = psFitsOpen ("gauss.fits", "w"); + psFitsWriteImage (fits, NULL, image, 0, NULL); + psFitsClose (fits); + + fits = psFitsOpen ("shift.fits", "w"); + psFitsWriteImage (fits, NULL, shift, 0, NULL); + psFitsClose (fits); + + psFree(shift); + psFree(image); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageSmooth.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageSmooth.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageSmooth.c (revision 12167) @@ -0,0 +1,165 @@ +/** @file tst_psImageConvolve.c + * + * This code will test the psImageSmooth() routine. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 23:56:12 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_ROWS 20 +#define NUM_COLS 20 +#define SIGMA 1.0 +#define NSIGMA 5.0 +#define TS00_IM_NULL 0x00000001 +#define TS00_IM_F32 0x00000002 +#define TS00_IM_F64 0x00000004 +#define TS00_IM_S32 0x00000008 +#define VERBOSE 0 + +static psBool testImageSmoothGeneric( + psU32 flags, + psS32 numCols, + psS32 numRows, + psF64 sigma, + psF64 Nsigma, + psBool expectedRC) +{ + psMemId id = psMemGetId(); + psBool testStatus = true; + psImage *img = NULL; + + if (VERBOSE) { + if (expectedRC == false) { + printf("This test should generate FALSE.\n"); + } else { + printf("This test should generate TRUE.\n"); + } + } + + if (flags & TS00_IM_NULL) { + if (VERBOSE) printf(" using a NULL image\n"); + } + + if (flags & TS00_IM_F32) { + if (VERBOSE) printf(" using a psF32 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_F32); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.F32[i][j] = 1.0; + } else { + img->data.F32[i][j] = 0.0; + } + } + } + } + if (VERBOSE) { + p_psImagePrint(1, img, "The Smoothed Image"); + } + + if (flags & TS00_IM_F64) { + if (VERBOSE) + printf(" using a psF64 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_F64); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.F64[i][j] = 1.0; + } else { + img->data.F64[i][j] = 0.0; + } + } + } + } + + if (flags & TS00_IM_S32) { + if (VERBOSE) + printf(" using a psS32 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_S32); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.S32[i][j] = 1; + } else { + img->data.S32[i][j] = 0; + } + } + } + } + if (VERBOSE) { + printf(" %d columns\n", numCols); + printf(" %d rows\n", numRows); + printf(" sigma is %.2f\n", sigma); + printf(" Nsigma is %.2f\n", Nsigma); + } + + psBool rc = psImageSmooth(img, sigma, Nsigma); + if (rc == false) { + if (expectedRC == true) { + diag("TEST ERROR: psImageSmooth returned FALSE\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: psImageSmooth returned TRUE\n"); + testStatus = false; + } + if (VERBOSE) { + p_psImagePrint(1, img, "The Smoothed Image"); + } + + if (flags & TS00_IM_F32) { + for (psS32 i = 1 ; i < numRows-1 ; i++) { + for (psS32 j = 1 ; j < numCols-1 ; j++) { + if ((fabs(img->data.F32[i][j] - 0.5) > 0.1)) { + diag("TEST ERROR: img[%d][%d] was %f, expected 0.5\n", + i, j, img->data.F32[i][j]); + testStatus = false; + } + } + } + } + + if (flags & TS00_IM_F64) { + for (psS32 i = 1 ; i < numRows-1 ; i++) { + for (psS32 j = 1 ; j < numCols-1 ; j++) { + if ((fabs(img->data.F64[i][j] - 0.5) > 0.1)) { + diag("TEST ERROR: img[%d][%d] was %f, expected 0.5\n", + i, j, img->data.F64[i][j]); + testStatus = false; + } + } + } + } + } + psFree(img); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return(testStatus); +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(14); + + ok(testImageSmoothGeneric(TS00_IM_F32, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, true), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_F32, 1, NUM_ROWS, SIGMA, NSIGMA, true), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_F32, NUM_COLS, 1, SIGMA, NSIGMA, true), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_F32, 1, 1, SIGMA, NSIGMA, true), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_F64, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, true), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_S32, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, false), "testImageSmoothGeneric() successful"); + ok(testImageSmoothGeneric(TS00_IM_NULL, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, false), "testImageSmoothGeneric() successful"); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageStats.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageStats.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageStats.c (revision 12167) @@ -0,0 +1,615 @@ +/* +* C Implementation: %{MODULE} +* +* Description: +* +* XXX: Must do sub Region tests +* XXX: Must do (1, N) and (N, 1) size tests +* +* Copyright: See COPYING file that comes with this distribution +* +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +bool testInRegion(psRegion region, int row, int col) +{ + return(row >= region.y0 && row < region.y1 && col >= region.x0 && col < region.x1); +} + +void genericImageCountPixelMaskTest(int numRows, int numCols) +{ + psMemId id = psMemGetId(); + + psRegion reg; + reg.x0 = 0; + reg.x1 = 0; + reg.y0 = 0; + reg.y1 = 0; + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + int expNumPix = 0; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (0 == i%2) { + img->data.PS_TYPE_MASK_DATA[i][j] = 1; + expNumPix++; + } else { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + } + psS32 numPix = psImageCountPixelMask(img, reg, 1); + ok(numPix == expNumPix, "psImageCountPixelMask() returned the correct number of pixels (no region)"); + + reg.x0 = numCols/4; + reg.x1 = 3 * numCols/4; + reg.y0 = numRows/4; + reg.y1 = 3 * numRows/4; + expNumPix = 0; + img->col0 = 0; + img->row0 = 0; + for (int i = 0 ; i < numRows ; i++) { + for (int j = 0 ; j < numCols ; j++) { + if (testInRegion(reg, i, j)) { + if (0 == i%2) { + img->data.PS_TYPE_MASK_DATA[i][j] = 1; + expNumPix++; + } else { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } else { + img->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + } + numPix = psImageCountPixelMask(img, reg, 1); + ok(numPix == expNumPix, "psImageCountPixelMask() returned the correct number of pixels (with region)"); + psFree(img); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + + +void genericImageStatsTest(int numRows, int numCols) +{ + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(numRows, numCols, PS_TYPE_F32); + psImage *msk = psImageAlloc(numRows, numCols, PS_TYPE_MASK); + psImage *imgSub = psImageSubset(img, psRegionSet(numRows/4, 3*numRows/4, + numCols/4, 3*numCols/4)); + psImage *mskSub = psImageSubset(img, psRegionSet(numRows/4, 3*numRows/4, + numCols/4, 3*numCols/4)); + float meanNoMask = 0.0; + float numPixelsNoMask = 0.0; + float meanMask = 0.0; + float numPixelsMask = 0.0; + for (int i = 0; i < numRows; i++) { + for (int j = 0; j < numRows; j++) { + if (0 == i%2) { + img->data.F32[i][j] = (float) (i + j); + msk->data.PS_TYPE_MASK_DATA[i][j] = 1; + meanNoMask+= img->data.F32[i][j]; + numPixelsNoMask+= 1.0; + } else { + img->data.F32[i][j] = (float) (i + j + 100); + msk->data.PS_TYPE_MASK_DATA[i][j] = 0; + meanNoMask+= img->data.F32[i][j]; + meanMask+= img->data.F32[i][j]; + numPixelsMask+= 1.0; + numPixelsNoMask+= 1.0; + } + } + } + meanNoMask/= numPixelsNoMask; + meanMask/= numPixelsMask; + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psStats* tmpStats = myStats; + + // Calculate Sample Mean with nomask + myStats = psImageStats(myStats, img, NULL, 0); + ok(myStats != NULL, "psImageStats() returned non-NULL"); + ok(myStats == tmpStats, "psImageStats() returned the original psStats struct"); + ok(fabs(myStats->sampleMean - meanNoMask) < .001, "psImageStats() calculated the mean correctly (no mask)"); + + // Calculate Sample Mean with mask + myStats = psImageStats(myStats, img, msk, 1); + ok(myStats != NULL, "psImageStats() returned non-NULL"); + ok(fabs(myStats->sampleMean - meanMask) < .001, "psImageStats() calculated the mean correctly (with mask)"); + + + // Repeat previous tests using the sub image + meanNoMask = 0.0; + numPixelsNoMask = 0.0; + meanMask = 0.0; + numPixelsMask = 0.0; + for (int i = 0; i < imgSub->numRows; i++) { + for (int j = 0; j < imgSub->numRows; j++) { + if (0 == i%2) { + imgSub->data.F32[i][j] = (float) (i + j); + mskSub->data.PS_TYPE_MASK_DATA[i][j] = 1; + meanNoMask+= imgSub->data.F32[i][j]; + numPixelsNoMask+= 1.0; + } else { + imgSub->data.F32[i][j] = (float) (i + j + 100); + mskSub->data.PS_TYPE_MASK_DATA[i][j] = 0; + meanNoMask+= imgSub->data.F32[i][j]; + meanMask+= imgSub->data.F32[i][j]; + numPixelsMask+= 1.0; + numPixelsNoMask+= 1.0; + } + } + } + meanNoMask/= numPixelsNoMask; + meanMask/= numPixelsMask; + tmpStats = myStats; + + // Calculate Sample Mean with nomask (sub image) + // XXXX: We skip these tests because they seg-fault. Not sure if the source + // is wrong or the tests are. + ok(false, "XXXX: skipping psImageStats() tests on a subRegion because of seg faults"); + if (0) { + myStats = psImageStats(myStats, imgSub, NULL, 0); + ok(myStats != NULL, "psImageStats() returned non-NULL"); + ok(myStats == tmpStats, "psImageStats() returned the original psStats struct"); + ok(fabs(myStats->sampleMean - meanNoMask) < .001, "psImageStats() calculated the mean correctly (no mask) (subImage)"); + printf("Expected %f, got %f\n", meanNoMask, myStats->sampleMean); + + // Calculate Sample Mean with mask (sub image) + myStats = psImageStats(myStats, imgSub, mskSub, 1); + ok(myStats != NULL, "psImageStats() returned non-NULL"); + ok(fabs(myStats->sampleMean - meanMask) < .001, "psImageStats() calculated the mean correctly (with mask) (subImage)"); + } + + psFree(myStats); + psFree(img); + psFree(msk); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + + +#define I_POLY(X, Y) ((A) + (B * X) + (C * Y) + (D * X * Y) + (E * X * X) + (F * Y * Y)) + +void genericFitChebyF32Test(int numCols, int numRows) +{ + psMemId id = psMemGetId(); + const double A = 1.0; + const double B = 2.0; + const double C = 3.0; + const double D = 4.0; + const double E = 5.0; + const double F = 6.0; + const double ERROR_TOL = 0.1; + psImage *tmpImage = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *outImage = psImageAlloc(numCols, numRows, PS_TYPE_F32); + for (int i=0;idata.F32[i][j] = I_POLY(((float) i), ((float) j)); + } + } + + psPolynomial2D *chebys = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + skip_start(chebys == NULL, 5, "Skipping tests because psPolynomial2DAlloc() returned NULL"); + psPolynomial2D *chebys2 = psImageFitPolynomial(chebys, tmpImage); + ok(chebys2 != NULL, "psImageFitPolynomial() returned non-NULL"); + ok(chebys2 == chebys, "psImageFitPolynomial() correctly recylced polynomial input"); + psImage *outImage2 = psImageEvalPolynomial(outImage, chebys); + ok(outImage2 != NULL, "psImageEvalPolynomial() returned non-NULL"); + ok(outImage2 == outImage, "psImageEvalPolynomial() correctly recylced input image"); + + bool errorFlag = false; + for (int i=1 ; i < numRows ; i++) { + for (int j=0 ; j < numCols ; j++) { + float expect = tmpImage->data.F32[i][j]; + float actual = outImage->data.F32[i][j]; + if (fabs((actual - expect) / expect) > ERROR_TOL) { + diag("ERROR: pixel [%d][%d] is %.2f should be %.2f\n", i, j, actual, expect); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageFitPolynomial() and psImageEvalPolynomial() produced the correct results (F32)"); + skip_end(); + psFree(tmpImage); + psFree(outImage); + psFree(chebys); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + +void genericFitChebyF64Test(int numCols, int numRows) +{ + psMemId id = psMemGetId(); + const double A = 1.0; + const double B = 2.0; + const double C = 3.0; + const double D = 4.0; + const double E = 5.0; + const double F = 6.0; + const double ERROR_TOL = 0.1; + psImage *tmpImage = psImageAlloc(numCols, numRows, PS_TYPE_F64); + psImage *outImage = psImageAlloc(numCols, numRows, PS_TYPE_F64); + for (int i=0;idata.F64[i][j] = I_POLY(((float) i), ((float) j)); + } + } + + psPolynomial2D *chebys = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + skip_start(chebys == NULL, 5, "Skipping tests because psPolynomial2DAlloc() returned NULL"); + psPolynomial2D *chebys2 = psImageFitPolynomial(chebys, tmpImage); + ok(chebys2 != NULL, "psImageFitPolynomial() returned non-NULL"); + ok(chebys2 == chebys, "psImageFitPolynomial() correctly recylced polynomial input"); + psImage *outImage2 = psImageEvalPolynomial(outImage, chebys); + ok(outImage2 != NULL, "psImageEvalPolynomial() returned non-NULL"); + ok(outImage2 == outImage, "psImageEvalPolynomial() correctly recylced input image"); + + bool errorFlag = false; + for (int i=1 ; i < numRows ; i++) { + for (int j=0 ; j < numCols ; j++) { + psF64 expect = tmpImage->data.F64[i][j]; + psF64 actual = outImage->data.F64[i][j]; + if (fabs((actual - expect) / expect) > ERROR_TOL) { + diag("ERROR: pixel [%d][%d] is %.2f should be %.2f\n", i, j, actual, expect); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageFitPolynomial() and psImageEvalPolynomial() produced the correct results (F64)"); + skip_end(); + psFree(tmpImage); + psFree(outImage); + psFree(chebys); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + + +void testPsImageFitPolynomial() +{ + psMemId id = psMemGetId(); + const int IMAGE_SIZE = 16; + const int CHEBY_X_DIM = 8; + const int CHEBY_Y_DIM = 8; + const int THRESHOLD = 1; + psImage *imgIn = psImageAlloc( IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32 ); + psImage *imgOut = psImageAlloc( IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32 ); + for (int i = 0;i < IMAGE_SIZE;i++ ) { + for (int j = 0;j < IMAGE_SIZE;j++ ) { + imgIn->data.F32[ i ][ j ] = 4.0; + imgIn->data.F32[ i ][ j ] = ( float ) ( i + j ); + imgIn->data.F32[ i ][ j ] = ( float ) ( i + j ) + ( 4.0 * ( float ) i ); + imgOut->data.F32[ i ][ j ] = 0.0; + } + } + psPolynomial2D *my2DPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, CHEBY_X_DIM-1, CHEBY_Y_DIM-1); + my2DPoly = psImageFitPolynomial(my2DPoly, imgIn ); + ok(my2DPoly != NULL, "psImageFitPolynomial() returned non-NULL"); + + imgOut = psImageEvalPolynomial( imgOut, my2DPoly ); + bool errorFlag = false; + for (int i = 0;i < IMAGE_SIZE;i++ ) { + for (int j = 0;j < IMAGE_SIZE;j++ ) { + if ( fabs( imgOut->data.F32[ i ][ j ] - imgIn->data.F32[ i ][ j ] ) > THRESHOLD ) { + diag("Pixel (%d, %d) is %.2f, should be %.2f\n", i, j, + imgOut->data.F32[ i ][ j ], + imgIn->data.F32[ i ][ j ]); + errorFlag = true; + } + + } + } + ok(!errorFlag, "psImageFitPolynomial() and psImageEvalPolynomial() produced the correct result"); + psFree(imgIn); + psFree(imgOut); + psFree(my2DPoly); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + +void genericpsImageHistogramTest(int numRows, int numCols, int numBins) +{ + if ((0 != numRows%4) || + (0 != numRows%numBins) || + (0 != numBins%2)) { + ok(false, "numRows must be a multiple of 4, and must be a integer multiple of numBins"); + } + + psImage *img = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *msk = psImageAlloc(numCols, numRows, PS_TYPE_MASK); + // XXX: Do subRegion tests later +// psImage *imgSub = psImageSubset(img, psRegionSet(numRows/4, 3*numRows/4, +// numCols/4, 3*numCols/4)); +// psImage *mskSub = psImageSubset(img, psRegionSet(numRows/4, 3*numRows/4, +// numCols/4, 3*numCols/4)); + for (int i = 0; i < numRows; i++) { + for (int j = 0; j < numCols; j++) { + img->data.F32[i][j] = 0.4 + (float) (i); + if (i >= numRows/2) { + msk->data.PS_TYPE_MASK_DATA[i][j] = 1; + } else { + msk->data.PS_TYPE_MASK_DATA[i][j] = 0; + } + } + } + + if (0) { + for (int i = 0; i < numRows; i++) { + for (int j = 0; j < numCols; j++) { + printf("(%.1f) ", img->data.F32[i][j]); + } + printf("\n"); + } + for (int i = 0; i < numRows; i++) { + for (int j = 0; j < numCols; j++) { + printf("(%d) ", msk->data.PS_TYPE_MASK_DATA[i][j]); + } + printf("\n"); + } + } + + // Calculate Histogram with no mask + { + psMemId id = psMemGetId(); + psHistogram *hist = psHistogramAlloc(0.0, (float) (numRows), numBins); + psHistogram *hist2 = psImageHistogram(hist, img, NULL, 0); + ok(hist2 != NULL, "psImageHistogram() returned non-NULL"); + skip_start(hist2 == NULL, 1, "Skipping tests because psImageHistogram() returned NULL"); + ok(hist2 == hist, "psImageHistogram() correctly recycled the input psHistogram"); + bool errorFlag = false; + for (int i = 0;i < numBins;i++ ) { + if (hist2->nums->data.F32[i] != (numCols * (numRows/numBins))) { + diag("ERROR: Bin number %d bounds: (%.1f - %.1f) data (%.2f)\n", i, + hist2->bounds->data.F32[i], + hist2->bounds->data.F32[i+1], + hist2->nums->data.F32[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psImageHistogram() produced the correct results (no mask)"); + skip_end(); + psFree(hist); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Calculate Histogram with mask + { + psMemId id = psMemGetId(); + psHistogram *hist = psHistogramAlloc(0.0, (float) (numRows), numBins); + psHistogram *hist2 = psImageHistogram(hist, img, msk, 1); + ok(hist2 != NULL, "psImageHistogram() returned non-NULL"); + skip_start(hist2 == NULL, 1, "Skipping tests because psImageHistogram() returned NULL"); + ok(hist2 == hist, "psImageHistogram() correctly recycled the input psHistogram"); + bool errorFlag = false; + for (int i = 0 ; i < numBins ; i++) { + if (i < numBins/2) { + if (hist2->nums->data.F32[i] != (numCols * (numRows/numBins))) { + diag("ERROR: Bin number %d bounds: (%.1f - %.1f) data (%.2f)\n", i, + hist2->bounds->data.F32[i], + hist2->bounds->data.F32[i+1], + hist2->nums->data.F32[i]); + errorFlag = true; + } + } else { + if (hist2->nums->data.F32[i] != 0) { + diag("ERROR: Bin number %d bounds: (%.1f - %.1f) data (%.2f)\n", i, + hist2->bounds->data.F32[i], + hist2->bounds->data.F32[i+1], + hist2->nums->data.F32[i]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageHistogram() produced the correct results (no mask)"); + skip_end(); + psFree(hist); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(img); + psFree(msk); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(58); + + // -------------------------------------------------------------- + // psImageCountPixelMask() + // Ensure psImageCountPixelMask returns -1 for NULL input image + // Following should generate error + // XXX: Verify error + { + psMemId id = psMemGetId(); + psRegion reg; + reg.x0 = 0; + reg.x1 = 1; + reg.y0 = 0; + reg.y1 = 4; + psS32 numPix = psImageCountPixelMask(NULL, reg, 1); + ok(numPix == -1, "psImageCountPixelMask() returned -1 for NULL input image"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Ensure psImageCountPixelMask returns -1 for NULL input image + // Following should generate error + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(16, 16, PS_TYPE_F32); + psRegion reg; + reg.x0 = 0; + reg.x1 = 1; + reg.y0 = 0; + reg.y1 = 4; + psS32 numPix = psImageCountPixelMask(in, reg, 1); + ok(numPix == -1, "psImageCountPixelMask() returned -1 for incorrect input image type"); + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Ensure psImageCountPixelMask returns -1 for bad region + // Following should generate error + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *in = psImageAlloc(16, 16, PS_TYPE_MASK); + psRegion reg; + reg.x0 = -1; + reg.x1 = 0; + reg.y0 = 0; + reg.y1 = 0; + psS32 numPix = psImageCountPixelMask(in, reg, 1); + ok(numPix == -1, "psImageCountPixelMask() returned -1 for bad region x0"); + reg.x0 = 0; + reg.y0 = -1; + numPix = psImageCountPixelMask(in, reg, 1); + ok(numPix == -1, "psImageCountPixelMask() returned -1 for bad region y0"); + // XXX: Should this fail? + if (0) { + reg.x0 = 1; + reg.x1 = 1; + reg.y0 = 1; + reg.y1 = 1; + numPix = psImageCountPixelMask(in, reg, 1); + ok(numPix == -1, "psImageCountPixelMask() returned -1 for bad region "); + } + psFree(in); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + genericImageCountPixelMaskTest(10, 10); + + + + // -------------------------------------------------------------- + // psImageStats() + // Ensure psImageStats() returnes NULL for NULL input image + // Following should generate error + // XXX: Verify error + { + psMemId id = psMemGetId(); + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psStats *myStats2 = psImageStats(myStats, NULL, NULL, 0); + ok(myStats2 == NULL, "psImageStats() returned NULL with NULL input image"); + psFree(myStats); + psFree(myStats2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Ensure psImageStats() returnes NULL for NULL psStats + // Following should generate error + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(10, 10, PS_TYPE_F32); + psStats *myStats = psImageStats(NULL, img, NULL, 0); + ok(myStats == NULL, "psImageStats() returned NULL with NULL psStats arg"); + psFree(img); + psFree(myStats); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + genericImageStatsTest(10, 10); + + + + // -------------------------------------------------------------- + // psImageFitPolynomial() and psImageEvalPolynomial() + // Following should be an error message for NULL coeffs argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(10, 10, PS_TYPE_F32); + psImage *img2 = psImageEvalPolynomial(img, NULL); + ok(img2 == NULL, "psImageEvalPolynomial() returned NULL with NULL coeffs argument"); + psFree(img); + psFree(img2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should be a error message for NULL input argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psPolynomial2D *poly2D = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + psImage *img = psImageEvalPolynomial(NULL, poly2D); + ok(img == NULL, "psImageEvalPolynomial() returned NULL with NULL input image"); + psFree(img); + psFree(poly2D); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should be an error message for NULL coeffs argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(10, 10, PS_TYPE_F32); + psPolynomial2D *poly2D = psImageFitPolynomial(NULL, img); + ok(poly2D == NULL, "psImageFitPolynomial() returned a NULL with NULL coeffs arg"); + psFree(img); + psFree(poly2D); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should be a error message for NULL input argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psPolynomial2D *poly2D = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + psPolynomial2D *poly2D2 = psImageFitPolynomial(poly2D, NULL); + ok(poly2D2 == NULL, "psImageFitPolynomial() returned a NULL with NULL input image"); + psFree(poly2D); + psFree(poly2D2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + genericFitChebyF32Test(10, 10); + genericFitChebyF64Test(10, 10); + // XXX: This next test is not necessary. Previous two functions make it redundant. + testPsImageFitPolynomial(); + + + + // -------------------------------------------------------------- + // psImageHistogram() + // Following should be a error message for NULL psHistogram argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(10, 10, PS_TYPE_F32); + psHistogram *hist = psImageHistogram(NULL, img, NULL, 0); + ok(hist == NULL, "psImageHistogram() returned NULL for NULL psHistogram arg"); + psFree(img); + psFree(hist); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should be a error message for NULL psImage argument + // XXX: Verify error + { + psMemId id = psMemGetId(); + psHistogram *hist = psHistogramAlloc(0.0, 100000.0, 1000); + psHistogram *hist2 = psImageHistogram(hist, NULL, NULL, 0); + ok(hist2 == NULL, "psImageHistogram() returned NULL for NULL psHistogram arg"); + psFree(hist); + psFree(hist2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should be a error message for incorrect mask type + // XXX: Verify error + { + psMemId id = psMemGetId(); + psImage *img = psImageAlloc(10, 10, PS_TYPE_F32); + psHistogram *hist = psHistogramAlloc(0.0, 100000.0, 1000); + psImage *msk = psImageAlloc(10, 10, PS_TYPE_S8); + psHistogram *hist2 = psImageHistogram(hist, img, msk, 1); + ok(hist2 == NULL, "psImageHistogram() returned NULL for incorrect mask type"); + psFree(hist); + psFree(hist2); + psFree(img); + psFree(msk); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + genericpsImageHistogramTest(16, 15, 4); +} Index: /branches/rel-1-1/psLib/test/imageops/tap_psImageStructManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tap_psImageStructManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tap_psImageStructManip.c (revision 12167) @@ -0,0 +1,496 @@ +/** @file tst_psImageExtraction.c +* +* @brief Contains the tests for psImageExtraction.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-08 01:21:50 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(185); + + + // psImageSubset shall create child image of a specified size from a + // parent psImage structure + + // psImageSubset() + { + psMemId id = psMemGetId(); + psImage preSubsetStruct; + psS32 c = 128; + psS32 r = 256; + psRegion region1 = psRegionSet(0,c/2,0,r/2); + psRegion region2 = psRegionSet(c/4,c/4+c/2,r/4,r/4+r/2); + + psImage* original = psImageAlloc(c,r,PS_TYPE_U32); + for (psS32 row=0;rowdata.F32[row][col] = row*1000+col; + } + } + + memcpy(&preSubsetStruct,original,sizeof(psImage)); + psImage* subset2 = psImageSubset(original,region2); + ok(subset2, "psImageSubset() returned non-NULL (subset2)"); + skip_start(subset2 == NULL, 25, "Skipping tests because psImageSubset() returned NULL"); + psImage* subset3 = psImageSubset(original,region1); + ok(subset3, "psImageSubset() returned non-NULL (subset3)"); + skip_start(subset3 == NULL, 24, "Skipping tests because psImageSubset() returned NULL"); + + // Verify the returned psImage structure members nrow and ncol are equal to + // the input parameter nrow and ncol respectively + ok(subset2->numCols == c/2 && subset2->numRows == r/2, + "psImageSubset output size set properly"); + ok(subset3->numCols == c/2 && subset3->numRows == r/2, + "psImageSubset output size set properly"); + + // Verify the returned psImage structure contains expected values in the + // row member, if the input psImage structure image contains known values + + bool errorFlag = false; + for (psS32 row=0;rowdata.U32[row][col] != original->data.U32[row+r/4][col+c/4]) { + diag("psImageSubset output #1 was wrong at %dx%d (%d vs %d).", + row,col,subset2->data.U32[row][col], original->data.U32[row+r/4][col+c/4]); + errorFlag = true; + } + if (subset3->data.U32[row][col] != original->data.U32[row][col]) { + diag("psImageSubset output #1 was wrong at %dx%d (%d vs %d).", + row,col,subset2->data.U32[row][col], original->data.U32[row][col]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageSubset() produced the expected values"); + + // Verify the returned psImage structure member type is equal to the input + // psImage structure member type + ok(subset2->type.type == PS_TYPE_U32, "psImageSubset() type was correct (subset2)"); + ok(subset3->type.type == PS_TYPE_U32, "psImageSubset() type was correct (subset3)"); + + // Verify the returned psImage structure members row0 and col0 are equal to + // the input parameters row0 and col0 respectively + ok(subset2->col0 == c/4 && subset2->row0 == r/4, + "psImageSubset() set col0/row0 correctly (subset2)"); + ok(subset3->col0 == 0 && subset3->row0 == 0, + "psImageSubset() set col0/row0 correctly (subset3)"); + + // Verify the returned psImage structure member parent is equal to the + // input psImage structure pointer image + ok(subset2->parent == original && subset3->parent == original, "psImageSubset() set ->parent correctly"); + + // Verify the returned psImage structure member children is null + ok(subset2->children == NULL && subset3->children == NULL, "psImageSubset() set ->children correctly"); + + + // Verify the input psImage structure image only has the following members + // changed: 1) Nchildren is increased by one. 2) parent contains pointer psImage structure + // out at parent[Nchildren-1] + ok(original->children != NULL && original->children->n == 2, "psImageSubset did increment number of children by one per subset."); + ok(original->children->data[0] == subset2 && original->children->data[1] == subset3, + "psImageSubset did properly store the children pointers."); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameter image is null. + // Also verified the input psImage structure is not modified + // An error should follow... + // XXX: Verify error + psImage* subset1 = psImageSubset(NULL,region1); + ok(subset1 == NULL, "psImageSubset returned NULL when input image was NULL."); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameters nrow and/or ncol are zero. + // Also verify input psImage structure is not modified + // An error should follow... + // XXX: Verify error + memcpy(&preSubsetStruct,original,sizeof(psImage)); + subset1 = psImageSubset(original, psRegionSet(0,c/2,r/2,r/2)); + ok(subset1 == NULL, "psImageSubset returned NULL when numRows=0."); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original,psRegionSet(c/2,c/2,0,r/2)); + ok(subset1 == NULL, "psImageSubset returned NULL when numCols=0."); + ok(memcmp(original,&preSubsetStruct,sizeof(psImage)) == 0, + "psImageSubset didn't change the original struct though it failed to subset."); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameters row0 and col0 are not within + // the range of values of psImage structure image + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original, psRegionSet(0,c/2, 0,r*2)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset origin was outside of image (via cols)"); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original,psRegionSet(0,c*2,0,r/2)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset origin was outside of image (via rows)"); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original, psRegionSet(-1,c/2,0,r/2)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset origin was outside of image (col0=-1)"); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original, psRegionSet(0,c/2,-1,r/2)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset origin was outside of image (row0=-1)"); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop if the input parameters nrow, ncol, row0 and col0 + // specify a range of data not within the input psImage structure image. Also + // verify the input psImage structure is not modified + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original,psRegionSet(0,c/2,0,r+1)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset was outside of image (via rows)"); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original, psRegionSet(0,c+1,0,r/2)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset was outside of image (via cols)"); + // An error should follow... + // XXX: Verify error + subset1 = psImageSubset(original,psRegionSet(0,c+1,0,r+1)); + ok(subset1 == NULL, + "psImageSubset returned NULL when subset was outside of image (via row+cols)"); + + + // psImageFreeChildren shall deallocate any children images of a + // psImage structure + memcpy(&preSubsetStruct,original,sizeof(psImage)); + psImageFreeChildren(original); + + // Verify the returned psImage structure member Nchildren is set to zero. + // XXX: This doesn't make sense. + ok(original->children == NULL || original->children->n == 0, + "psImageFreeChildren didn't set children to NULL"); + + //Verify the returned psImage structure members type, nrow, ncol, row0, col0, rows + // and parent are not modified. + ok(preSubsetStruct.numRows == original->numRows && + preSubsetStruct.numCols == original->numCols && + preSubsetStruct.row0 == original->row0 && + preSubsetStruct.col0 == original->col0, + "psImageFreeChildren modified parent's non-children elements"); + + skip_end(); + skip_end(); + psFree(original); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psImageCopy() + { + psMemId id = psMemGetId(); + psU32 c = 128; + psU32 r = 256; + + psImage* img = psImageAlloc(c,r,PS_TYPE_F32); + for (unsigned row=0;rowdata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coltype.type == img->type.type, "psImageCopy() set the correct image type"); + bool errorFlag = false; + for (psU32 row=0;rowdata.F32[row]; + psF32* imgOutRow = img4->data.F32[row]; + for (unsigned col=0;coldata.IN[row]; \ + for (unsigned col=0;coldata.IN[row]; \ + ps##OUT* img2Row = img2->data.OUT[row]; \ + for (psU32 col=0;col 0.5) { \ + diag("Input image was changed at %d,%d", col,row); \ + errorFlag = true; \ + } \ + if (abs(img2Row[col] - (ps##OUT)(imgRow[col])) > 0.5) { \ + diag("returned psImage values after copy don't match at %d,%d " \ + "(%d vs %d)",\ + col,row,img2Row[col], (ps##OUT)(imgRow[col])); \ + errorFlag = true; \ + } \ + } \ + } \ + ok(!errorFlag, "psImageCopy() set image data correctly"); \ + } else {\ + ok(img2, "psImageCopy() returned non-NULL"); \ + } \ + } + + #define testImageCopyTypes(IN) \ + testImageCopyType(IN,F32);\ + testImageCopyType(IN,F64); \ + testImageCopyType(IN,U8); \ + testImageCopyType(IN,U16); \ + testImageCopyType(IN,U32); \ + testImageCopyType(IN,S8);\ + testImageCopyType(IN,S16);\ + testImageCopyType(IN,S32); + + testImageCopyTypes(U8); + testImageCopyTypes(U16); + testImageCopyTypes(U32); + testImageCopyTypes(S8); + testImageCopyTypes(S16); + testImageCopyTypes(S32); + testImageCopyTypes(F32); + testImageCopyTypes(F64); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameter input is null. + // An error should follow... + // XXX: Verify error + img3 = psImageCopy(NULL,NULL,PS_TYPE_F32); + ok(img3 == NULL, "psImageCopy() returned NULL when input image was NULL"); + + psFree(img); + psFree(img2); + psFree(img3); + psFree(img4); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psImageTrim() + // XXX: This should probably be broken into separate blocks + { + psMemId id = psMemGetId(); + psS32 r = 200; + psS32 c = 300; + psS32 qtrR = r/4; + psS32 qtrC = c/4; + psS32 halfR = r/2; + psS32 halfC = c/2; + psRegion centerHalf = {qtrC,qtrC+halfC,qtrR,qtrR+halfR}; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + for (psS32 row = 0; row < image->numRows; row++) + { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = (psF32)col + (psF32)row/1000.0f; + } + } + + // invoke psImageTrim with non-NULL image, and a valid region + // x0,y0->x1,y1 (using only positive values). Verify that: + // a. the return psImage is the same as the input psImage. + // b. the size of the psImage is x1-x0 by y1-y0. + // c. the pixel values coorespond to the region [x0:x1-1,y0:y1-1]. + psImage* image1 = psImageCopy(NULL,image,PS_TYPE_F32); + psImage* image2 = psImageTrim(image1,centerHalf); + ok(image1 == image2, "psImageTrim() Return value same as input value"); + ok(image2->numCols == halfC && image2->numRows == halfR, + "The resulting image size was %dx%d, should be %dx%d.", + image2->numCols, image2->numRows, + halfC, halfR); + + bool errorFlag = false; + for (psS32 row = 0; row < image2->numRows; row++) + { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - image->data.F32[row+qtrR][col+qtrC]) + > FLT_EPSILON) { + diag("The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageTrim() set image data correctly"); + + + // 2. invoke psImageTrim with non-NULL image and valid region where x1=0, + // y1=0. Verify that: + // a. the return psImage size is numCols-x0 by numRows-y0 + // b. the pixel values coorespond to the region + // [x0:numCols-1,y0:numRows-1]. + image1 = psImageCopy(image1,image,PS_TYPE_F32); + image2 = psImageTrim(image1,psRegionSet(qtrC,0,qtrR,0)); + ok(image1 == image2, "psImageTrim() Return value same as input value"); + ok(image2->numCols == image->numCols-qtrC && image2->numRows == image->numRows-qtrR, + "The resulting image size was %dx%d, it should be %dx%d.", + image2->numCols, image2->numRows, + image->numCols-qtrC, image->numRows-qtrR); + + for (psS32 row = 0; row < image2->numRows; row++) + { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - + image->data.F32[row+qtrR][col+qtrC]) > FLT_EPSILON) { + diag("The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageTrim() set image data correctly"); + + // 4. invoke psImageTrim with x1<0, y1<0. Verify: + // a. the psImage size is (numCols+x1)-x0 by (numRows+y1)-y0. + // b. the pixel values coorespond to the region + // [x0:numCols+x1-1,y0:numRows+y1-1]. + image1 = psImageCopy(image1,image,PS_TYPE_F32); + image2 = psImageTrim(image1,psRegionSet(qtrC,-qtrC, qtrR,-qtrR)); + ok(image1 == image2, "psImageTrim() Return value same as input value"); + ok(image2->numCols == image->numCols-qtrC-qtrC && image2->numRows == image->numRows-qtrR-qtrR, + "The resulting image size was %dx%d, but should be %dx%d.", + image2->numCols, image2->numRows, + image->numCols-qtrC, image->numRows-qtrR); + + for (psS32 row = 0; row < image2->numRows; row++) + { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - + image->data.F32[row+qtrR][col+qtrC]) > FLT_EPSILON) { + diag("The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageTrim() set image data correctly"); + psFree(image1); + + // 6. invoke psImageTrim with image=NULL Verify: + // a. execution does not cease. + // b. return value is NULL + // c. appropriate error is generated. + // An error should follow... + // XXX: Verify errors + + + image2 = psImageTrim(NULL, psRegionSet(qtrC,0,qtrR,0)); + ok(image2 == NULL, "psImageTrim returned NULL given a NULL input image"); + psErr* err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_NULL, + "psImageTrim did generate an appropriate error for NULL input image."); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(-1,0,0,0)); + ok(image2 == NULL, "psImageTrim returned NULL given x0=-1."); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for x0=-1."); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,-1,0)); + ok(image2 == NULL, "psImageTrim returned NULL given y0=-1."); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for y0=-1"); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,image->numCols+1,0,0)); + ok(image2 == NULL, "psImageTrim returned NULL given x1=numCols+1"); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for x1=numCols+1"); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,0,image->numRows+1)); + ok(image2 == NULL, "psImageTrim returned NULL given y1=numRows+1"); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for y1=numRows+1"); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,0,(((psF32)image->numRows)*-1.0))); + ok(image2 == NULL, "psImageTrim returned NULL given y1=-numRows"); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for y1=-numRows"); + psFree(err); + + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,(((psF32)image->numCols)*-1.0),0,0)); + ok(image2 == NULL, "psImageTrim returned NULL given x1=-numCols"); + err = psErrorLast(); + ok(err != NULL && err->code == PS_ERR_BAD_PARAMETER_VALUE, + "psImageTrim did generate an appropriate error for x1=-numCols"); + + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageConvolve.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageConvolve.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageConvolve.c (revision 12167) @@ -0,0 +1,445 @@ +/** @file tst_psImageConvolve.c + * + * @brief Contains the tests for psImageConvolve.[ch] + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-02-24 23:43:15 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testKernelAlloc(void); +static psS32 testKernelGenerate(void); +static psS32 testImageConvolve(void); + +testDescription tests[] = { + {testKernelAlloc,731,"psKernelAlloc",0,false}, + {testKernelGenerate,732,"psKernelGenerate",0,false}, + {testImageConvolve,733,"psImageConvolve",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + +static psS32 testKernelAlloc(void) +{ + psS32 numCases = 4; + psS32 xMin[] = { -5, 0,-10, 5}; + psS32 xMax[] = { 0, 5, -5, 10}; + psS32 yMin[] = { -4, 0, -8, 4}; + psS32 yMax[] = { 0, 4, -4, 8}; + psS32 i; + psKernel* k; + + for (i=0;ixMin != xMin[i] || k->xMax != xMax[i] || + k->yMin != yMin[i] || k->yMax != yMax[i]) { + psError(PS_ERR_UNKNOWN, true,"Min/max members, [%d:%d,%d:%d], of psKernel wrong. Should be [%d:%d,%d:%d].", + k->xMin,k->xMax, k->yMin, k->yMax, + xMin[i], xMax[i], yMin[i], yMax[i]); + return i*10+2; + } + + if (k->image->numCols != xMax[i]-xMin[i]+1 || + k->image->numRows != yMax[i]-yMin[i]+1) { + psError(PS_ERR_UNKNOWN, true,"Size of the kernel image is wrong (%dx%d vs %dx%d).", + xMax[i]-xMin[i]+1, yMax[i]-yMin[i]+1, + k->image->numCols, k->image->numRows); + return i*10+2; + } + + for (psS32 j=yMin[i]; jkernel[j]+xMin[i] != k->image->data.PS_TYPE_KERNEL_DATA[j-yMin[i]]) { + psError(PS_ERR_UNKNOWN, true,"The kernel pointer was set wrong for row %d.", + j); + return i*10+4; + } + } + + psFree(k); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be a warning (xMin > xMax)"); + k = psKernelAlloc(5, -5, -2, 2); + if (k == NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelAlloc returned NULL for xMin > xMax."); + return i*10+5; + } + + if (k->xMin != -5 || k->xMax != 5) { + psError(PS_ERR_UNKNOWN, true,"psKernelAlloc didn't swap xMin & xMax."); + return i*10+6; + } + + psFree(k); + + psLogMsg(__func__,PS_LOG_INFO,"Following should be a warning (yMin > yMax)"); + k = psKernelAlloc(-2, 2, 5, -5); + if (k == NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelAlloc returned NULL for yMin > yMax."); + return i*10+7; + } + + if (k->yMin != -5 || k->yMax != 5) { + psError(PS_ERR_UNKNOWN, true,"psKernelAlloc didn't swap yMin & yMax."); + return i*10+8; + } + + psFree(k); + + return 0; +} + +static psS32 testKernelGenerate(void) +{ + psS32 size = 5; + psS32 t[] = { 1, 2, 8, 9, 10 }; + psS32 x[] = { 0, 1, 0, -1, 0 }; + psS32 y[] = { 2, 1, -1, -2, 0 }; + float sum; + + psVector* xVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* yVec = psVectorAlloc(size,PS_TYPE_U32); + psVector* tVec = psVectorAlloc(size,PS_TYPE_U32); + + for (psS32 i = 0; i < size; i++) { + xVec->data.U32[i] = x[i]; + xVec->n++; + yVec->data.U32[i] = y[i]; + yVec->n++; + tVec->data.U32[i] = t[i]; + tVec->n++; + } + + psKernel* result = psKernelGenerate(tVec, xVec, yVec, false); + + if (result == NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned NULL."); + return 1; + } + + if (result->xMin != -1 || result->xMax != 1 || + result->yMin != -2 || result->yMax != 2) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result had a range of [%d:%d,%d:%d]. Suppose to be [-2:2,-1:1].", + result->xMin, result->xMax, result->yMin, result->yMax); + return 2; + } + + sum = 0.0; + printf("Resulting kernel:\n"); + for (psS32 y = result->yMin; y <= result->yMax; y++) { + for (psS32 x = result->xMin; x <= result->xMax; x++) { + printf(" %6.2f ", result->kernel[y][x]); + sum += result->kernel[y][x]; + } + printf("\n"); + } + if (fabsf(1.0 - sum) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result is not normalized (sum=%g).", + sum); + + return 3; + + } + + if (fabsf(result->kernel[-2][0] - 0.1) > FLT_EPSILON || + fabsf(result->kernel[ -1][ -1] - 0.1) > FLT_EPSILON || + fabsf(result->kernel[ 1][ 0] - 0.6) > FLT_EPSILON || + fabsf(result->kernel[2][1] - 0.1) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result values, %g,%g,%g,%g, are wrong. Suppose to be 0.1,0.1,0.6,0.1", + result->kernel[-2][0], result->kernel[-1][-1], + result->kernel[1][0], result->kernel[2][1]); + + return 4; + } + + psFree(result); + psFree(xVec); + psFree(yVec); + psFree(tVec); + + xVec = psVectorAlloc(size,PS_TYPE_S16); + yVec = psVectorAlloc(size,PS_TYPE_S16); + tVec = psVectorAlloc(size,PS_TYPE_S16); + + for (psS32 i = 0; i < size; i++) { + xVec->data.S16[i] = x[i]; + xVec->n++; + yVec->data.S16[i] = y[i]; + yVec->n++; + tVec->data.S16[i] = t[i]; + tVec->n++; + } + + result = psKernelGenerate(tVec, xVec, yVec, true); + + if (result == NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned NULL."); + return 5; + } + + if (result->xMin != 0 || result->xMax != 1 || + result->yMin != 0 || result->yMax != 3) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result had a range of [%d:%d,%d:%d]. Suppose to be [0:1,1:2].", + result->xMin, result->xMax, result->yMin, result->yMax); + return 6; + } + + sum = 0.0; + printf("Resulting kernel (relative=true):\n"); + for (psS32 y = result->yMin; y <= result->yMax; y++) { + for (psS32 x = result->xMin; x <= result->xMax; x++) { + printf(" %6.2f ", result->kernel[y][x]); + sum += result->kernel[y][x]; + } + printf("\n"); + } + if (fabsf(1.0 - sum) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result is not normalized (sum=%g).", + sum); + + return 7; + + } + + if (fabsf(result->kernel[0][0] - 19.0/30.0) > FLT_EPSILON || + fabsf(result->kernel[2][0] - 1.0/30.0) > FLT_EPSILON || + fabsf(result->kernel[2][1] - 8.0/30.0) > FLT_EPSILON || + fabsf(result->kernel[3][1] - 2.0/30.0) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate result values, %g,%g;%g,%g, are wrong. Suppose to be 2,6;1,0.", + result->kernel[0][0], result->kernel[2][0], + result->kernel[2][1], result->kernel[3][1]); + + return 8; + } + + psFree(result); + psFree(xVec); + psFree(yVec); + psFree(tVec); + + xVec = psVectorAlloc(size,PS_TYPE_F32); + yVec = psVectorAlloc(size,PS_TYPE_F32); + tVec = psVectorAlloc(size,PS_TYPE_F32); + + for (psS32 i = 0; i < size; i++) { + // xVec->data.F32[i] = x[i]+0.1; + // xVec->n++; + psVectorSet(xVec, i, x[i]+0.1); + yVec->data.F32[i] = y[i]+0.2; + yVec->n++; + tVec->data.F32[i] = t[i]+0.3; + tVec->n++; + } + + tVec->n--; // decrease size by one to make vectors unequal in length. + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + result = psKernelGenerate(tVec, xVec, yVec, false); + if (result != NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned non-NULL given differing sized vectors."); + return 9; + } + + psFree(result); + + psLogMsg(__func__,PS_LOG_INFO, "Following should be a error (time vector NULL)."); + result = psKernelGenerate(NULL, xVec, yVec, true); + if (result != NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned a kernel with no time vector."); + return 11; + } + + psLogMsg(__func__,PS_LOG_INFO, "Following should be a error (x vector NULL)."); + result = psKernelGenerate(tVec, NULL, yVec, true); + if (result != NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned a kernel with no x vector."); + return 11; + } + + psLogMsg(__func__,PS_LOG_INFO, "Following should be a error (y vector NULL)."); + result = psKernelGenerate(tVec, xVec, NULL, true); + if (result != NULL) { + psError(PS_ERR_UNKNOWN, true,"psKernelGenerate returned a kernel with no y vector."); + return 11; + } + + psFree(xVec); + psFree(yVec); + psFree(tVec); + psFree(result); + + return 0; +} + +static psS32 testImageConvolve(void) +{ + const psS32 r = 200; + const psS32 c = 300; + psS32 sum; + + // approximate a normalized gaussian kernel. + psKernel* g = psKernelAlloc(-1,1,-1,1); + g->kernel[-1][-1] = + g->kernel[-1][1] = + g->kernel[1][-1] = + g->kernel[1][1] = 0.0113; + g->kernel[1][0] = + g->kernel[-1][0] = + g->kernel[0][-1] = + g->kernel[0][1] = 0.0838; + g->kernel[0][0] = 0.6193; + + // create a normalized non-symetric kernel. + psKernel* nsk = psKernelAlloc(0,2,0,2); + sum = 0.0; + for (psS32 i=0;i<2;i++) { + for (psS32 j=0;j<2;j++) { + nsk->kernel[i][j] = i+j; + sum = i+j; + } + } + for (psS32 i=0;i<2;i++) { + for (psS32 j=0;j<2;j++) { + nsk->kernel[i][j] /= sum; + } + } + + + psImage* img = psImageAlloc(c,r,PS_TYPE_F32); + memset(img->data.F32[0],0,c*r*PSELEMTYPE_SIZEOF(PS_TYPE_F32)); + img->data.F32[0][0] = 1.0f; + img->data.F32[r/2][c/2] = 1.0f; + img->data.F32[r-1][c/2] = 1.0f; + + // test spacial convolution of gaussian + psLogMsg(__func__,PS_LOG_INFO,"Testing direct gaussian convolution"); + psImage* out = psImageConvolve(NULL, img, g, true); + + if (out == NULL) { + psError(PS_ERR_UNKNOWN, true, "psImageConvolve returned a NULL for direct gaussian case."); + return 1; + } + + if (out->numCols != c || out->numRows != r) { + psError(PS_ERR_UNKNOWN, true, "psImageConvolve result image is %dx%d, but expected %dx%d.", + out->numCols, out->numRows, + c,r); + return 2; + } + + if (out->type.type != PS_TYPE_F32) { + char* typeStr; + PS_TYPE_NAME(typeStr,out->type.type); + psError(PS_ERR_UNKNOWN, true, "psImageConvolve result image is of type %s, not psF32.", + typeStr); + return 3; + } + + // test values + for (psS32 i=-1;i<1;i++) { + for (psS32 j=-1;j<1;j++) { + if (fabsf(out->data.F32[r/2+i][c/2+j] - g->kernel[i][j]) > 0.0001) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + c/2+j,r/2+i, + out->data.F32[r/2+i][c/2+j], g->kernel[i][j]); + return 4; + } + if (i >= 0 && j >= 0 && fabsf(out->data.F32[i][j] - g->kernel[i][j]) > 0.0001) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + j,i, + out->data.F32[i][j], g->kernel[i][j]); + return 5; + } + if (i <= 0 && fabsf(out->data.F32[r-1+i][c/2+j] - g->kernel[i][j]) > 0.0001) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + c/2+j,r-1+i, + out->data.F32[r-1+i][c/2+j], g->kernel[i][j]); + return 6; + } + } + } + + // test fourier convolution of gaussian + psLogMsg(__func__,PS_LOG_INFO,"Testing fourier gaussian convolution"); + psImage* out2 = psImageConvolve(out, img, g, false); + + if (out == NULL) { + psError(PS_ERR_UNKNOWN, true, "psImageConvolve returned a NULL for gaussian case."); + return 10; + } + + if (out != out2) { + psError(PS_ERR_UNKNOWN, true, "psImageConvolve didn't recycle the supplied out image struct."); + return 11; + } + + if (out->numCols != c || out->numRows != r) { + psError(PS_ERR_UNKNOWN, true, "psImageConvolve result image is %dx%d, but expected %dx%d.", + out->numCols, out->numRows, + c,r); + return 12; + } + + if (out->type.type != PS_TYPE_F32) { + char* typeStr; + PS_TYPE_NAME(typeStr,out->type.type); + psError(PS_ERR_UNKNOWN, true, "psImageConvolve result image is of type %s, not psF32.", + typeStr); + return 13; + } + + // test values + for (psS32 i=-1;i<1;i++) { + for (psS32 j=-1;j<1;j++) { + if (fabsf(out->data.F32[r/2+i][c/2+j] - g->kernel[i][j]) > 0.01) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + c/2+j,r/2+i, + out->data.F32[r/2+i][c/2+j], g->kernel[i][j]); + return 14; + } + if (i >= 0 && j >= 0 && fabsf(out->data.F32[i][j] - g->kernel[i][j]) > 0.01) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + j,i, + out->data.F32[i][j], g->kernel[i][j]); + return 15; + } + if (i <= 0 && fabsf(out->data.F32[r-1+i][c/2+j] - g->kernel[i][j]) > 0.01) { + psError(PS_ERR_UNKNOWN, true,"Convolved image wrong at %d,%d. Value is %g, expected %g.", + c/2+j,r-1+i, + out->data.F32[r-1+i][c/2+j], g->kernel[i][j]); + return 16; + } + } + } + + psFree(g); + psFree(img); + psFree(nsk); + psFree(out); + return 0; +} + Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageGeomManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageGeomManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageGeomManip.c (revision 12167) @@ -0,0 +1,1150 @@ +/** @file tst_psImageGeomManip.c + * + * @brief Contains the tests for psImageManip.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-04-20 01:13:11 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include +#include +#include // for memset +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageRebin(void); +static psS32 testImageRoll(void); +static psS32 testImageRotate(void); +static psS32 testImageShift(void); +static psS32 testImageShiftCase(psS32 cols, psS32 rows, float colShift,float rowShift); +static psS32 testImageResample(void); +static psS32 testImageTransform(void); + +testDescription tests[] = { + {testImageRebin,559,"psImageRebin",0,false}, + {testImageRoll,562,"psImageRoll",0,false}, + {testImageRotate,560,"psImageRotate",0,false}, + {testImageShift,561,"psImageShift",0,false}, + {testImageResample,743,"psImageResample",0,false}, + {testImageTransform,-1,"psImageTransform",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + +static psS32 testImageRebin(void) +{ + + /* + This function shall generate a rescaled version of a psImage structure + derived from a specified statistics method. + */ + + psImage* in = NULL; + psImage* out = NULL; + psImage* out2 = NULL; + psImage* out3 = NULL; + psImage* mask = NULL; + psImage* meanTruth = NULL; + psImage* meanTruthWMask = NULL; + psImage* maxTruth = NULL; + psStats stats; + + /* + Verify the returned psImage structure contains expected values, if the + input parameter input contains known data, the input scale is a known + value with a known statistical method specified in stats. Cases should + include at least two different scales and statistical methods. Comparison + of expected values should include a delta to allow testing on different + platforms. + */ + + #define testRebinType(DATATYPE) \ + in = psImageAlloc(16,16,PS_TYPE_##DATATYPE); \ + mask = psImageAlloc(16,16,PS_TYPE_U8); \ + meanTruth = psImageAlloc(4,4,PS_TYPE_F32); \ + meanTruthWMask = psImageAlloc(4,4,PS_TYPE_F32); \ + maxTruth = psImageAlloc(6,6,PS_TYPE_F32); \ + memset(meanTruth->data.F32[0],0,sizeof(psF32)*4*4); \ + memset(meanTruthWMask->data.F32[0],0,sizeof(psF32)*4*4); \ + memset(maxTruth->data.F32[0],0,sizeof(psF32)*6*6); \ + for (psS32 row = 0; row<16; row++) { \ + ps##DATATYPE* inRow = in->data.DATATYPE[row]; \ + psF32* meanTruthRow = meanTruth->data.F32[row/4]; \ + psF32* meanTruthWMaskRow = meanTruthWMask->data.F32[row/4]; \ + psF32* maxTruthRow = maxTruth->data.F32[row/3]; \ + psU8* maskRow = mask->data.U8[row]; \ + for (psS32 col = 0; col<16; col++) { \ + if(col != 15) { \ + maskRow[col] = 0; \ + } else { \ + maskRow[col] = 1; \ + } \ + inRow[col] = row + col; \ + meanTruthRow[col/4] += row + col; \ + if (maxTruthRow[col/3] < row + col) { \ + maxTruthRow[col/3] = row+col; \ + } \ + if(maskRow[col] == 0 ) { \ + meanTruthWMaskRow[col/4] += row + col; \ + } \ + } \ + } \ + for (psS32 row = 0; row<4; row++) { \ + psF32* meanTruthRow = meanTruth->data.F32[row]; \ + psF32* meanTruthWMaskRow = meanTruthWMask->data.F32[row]; \ + for (psS32 col = 0; col<4; col++) { \ + meanTruthRow[col] /= 16; \ + if ( col == 3 ) { \ + meanTruthWMaskRow[col] /= 12; \ + } else { \ + meanTruthWMaskRow[col] /= 16; \ + } \ + } \ + } \ + stats.options = PS_STAT_SAMPLE_MEAN; \ + out = psImageRebin(NULL,in,NULL,0,4,&stats); \ + if (out == NULL) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned a NULL pointer!?"); \ + return 1; \ + } \ + if (out->numRows != 4 || out->numCols != 4) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin didn't produce the proper size image " \ + "(%d x %d).", \ + out->numCols, out->numRows); \ + return 2; \ + } \ + for (psS32 row = 0; row<4; row++) { \ + ps##DATATYPE* outRow = out->data.DATATYPE[row]; \ + psF32* truthRow = meanTruth->data.F32[row]; \ + for (psS32 col = 0; col<4; col++) { \ + if (fabsf((float)outRow[col]-(float)truthRow[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin didn't produce the proper mean " \ + "result at (%d,%d) [%f vs %f].", \ + col,row,outRow[col],truthRow[col]); \ + return 3; \ + } \ + } \ + } \ + stats.options = PS_STAT_SAMPLE_MEAN; \ + out3 = psImageRebin(NULL,in,mask,1,4,&stats); \ + for (psS32 row = 0; row<4; row++) { \ + ps##DATATYPE* outRow = out3->data.DATATYPE[row]; \ + psF32* truthRow = meanTruthWMask->data.F32[row]; \ + for ( psS32 col = 0; col<4; col++) { \ + if(abs((psS32)outRow[col]-(psS32)truthRow[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin with mask didn't produce the proper mean " \ + "result at (%d,%d) [%f vs %f].", \ + col,row,outRow[col],truthRow[col]); \ + return 3; \ + } \ + } \ + } \ + stats.options = PS_STAT_MAX; \ + out2 = psImageRebin(out,in,NULL,0,3,&stats); \ + if (out != out2) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin didn't recycle a psImage properly!?"); \ + return 7; \ + } \ + if (out == NULL) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned a NULL pointer!?"); \ + return 4; \ + } \ + if (out->numRows != 6 || out->numCols != 6) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin didn't produce the proper size image " \ + "(%d x %d).", \ + out->numCols, out->numRows); \ + return 5; \ + } \ + for (psS32 row = 0; row<6; row++) { \ + ps##DATATYPE* outRow = out->data.DATATYPE[row]; \ + psF32* truthRow = maxTruth->data.F32[row]; \ + for (psS32 col = 0; col<6; col++) { \ + if (fabsf((float)outRow[col]-(float)truthRow[col]) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"psImageRebin didn't produce the proper " \ + "max result at (%d,%d) [%f vs %f].", \ + col,row,outRow[col],truthRow[col]); \ + return 6; \ + } \ + } \ + } \ + psFree(in); \ + psFree(out); \ + psFree(out3); \ + psFree(mask); \ + psFree(meanTruth); \ + psFree(meanTruthWMask); \ + psFree(maxTruth); + + testRebinType(F32); + testRebinType(F64); + testRebinType(U16); + testRebinType(S8); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input image type is not supported. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for unsupported type."); + in = psImageAlloc(16,16,PS_TYPE_U8); + mask = psImageAlloc(16,16,PS_TYPE_F32); + stats.options = PS_STAT_SAMPLE_MEAN; + out = psImageRebin(NULL,in,NULL,0,4,&stats); + if(out != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin return an image eventhough the " + "type is not handled."); + return 14; + } + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the mask type is not U8 + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for invallid mask type."); + out = psImageRebin(NULL,in,mask,1,4,&stats); + if(out != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin return an image eventhough the " + "mask is not the correct type."); + return 17; + } + psFree(mask); + psFree(in); + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter input is null. + + out2 = psImageRebin(NULL,NULL,NULL,0,1,&stats); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the input was " + "NULL!?"); + return 8; + } + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter scale is less than or equal to zero. + in = psImageAlloc(16, 16, PS_TYPE_F32); + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for scale < 0."); + out2 = psImageRebin(NULL,in,NULL,0,0,&stats); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the scale was " + "zero!?"); + return 9; + } + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter stats is null. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for stats null."); + out2 = psImageRebin(NULL,in,NULL,0,1,NULL); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the stats was " + "NULL!?"); + return 10; + } + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter psStats structure member options + // is zero or any value which doesn't correspond to a valid statistical + // method. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for stats options 0."); + stats.options = 0; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the stats " + "options was zero!?"); + return 11; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for stat options use range."); + stats.options = PS_STAT_USE_RANGE; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the stats " + "options was PS_STAT_USE_RANGE!?"); + return 12; + } + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the input parameter psStats structure member options + // specifies more than one valid statistical method. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for stats with multiple options."); + stats.options = PS_STAT_SAMPLE_MEAN + PS_STAT_MAX; + out2 = psImageRebin(NULL,in,NULL,0,1,&stats); + + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageRebin returned an image though the stats " + "options was PS_STAT_SAMPLE_MEAN+PS_STAT_MAX!?"); + return 13; + } + + psFree(in); + + return 0; +} + +static psS32 testImageRoll(void) +{ + + psImage* in; + psImage* out; + psImage* out2; + psS32 rows = 64; + psS32 cols = 64; + psS32 rows1 = 8; + psS32 cols1 = 8; + + /* + The function psImageRoll shall generate a new psImage structure by + rolling the input image the correponding number of pixels in the vertical + and/or horizontal direction. The image output image shall be the same size + as the input image. Values which roll off the image are wrapped to the + other side. + + Verify the returned psImage structure contains expected values, if the + input image contains known values and the roll performed is known. + Cases should include no roll, vertical roll, horizontal roll and + combination vertical/horizontal rolls. Positive and negative rolls + should be performed. + */ + + in = psImageAlloc(cols,rows,PS_TYPE_F32); + for (psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows/4)%rows]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows/4)%rows]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[row]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows-rows/4)%rows]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.F32[(row+rows-rows/4)%rows]; + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;coldata.DATATYPE[row]; \ + for (psS32 col=0;coldata.DATATYPE[(row+rows1/4)%rows1]; \ + ps##DATATYPE* outRow = out->data.DATATYPE[row]; \ + for (psS32 col=0;coldata.F32[row]; + psS16* sRow = sImg->data.S16[row]; + for (psS32 col=0;colnumRows != fOut->numRows || fTruth->numCols != fOut->numCols) { + psError(PS_ERR_UNKNOWN, true,"Rotated float image size did not match truth " + "image for %d deg rotation (%dx%d vs %dx%d).", + rot,fOut->numCols,fOut->numRows,fTruth->numCols,fTruth->numRows); + fail = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psF32* truthRow = fTruth->data.F32[row]; + psF32* outRow = fOut->data.F32[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + psError(PS_ERR_UNKNOWN, true,"Float Image mismatch (%f vs %f) at %d,%d.", + outRow[col], truthRow[col],col,row); + fail = true; + } + } + } + } + } + + if (sTruth == NULL) { + psError(PS_ERR_UNKNOWN, true,"verified psS16 image failed to be read " + "(%d deg. rotation)",rot); + fail = true; + } else { + if (sTruth->numRows != sOut->numRows || + sTruth->numCols != sOut->numCols) { + psError(PS_ERR_UNKNOWN, true,"Rotated psS16 image size did not match truth " + "image for %d deg rotation.",rot); + fail = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psS16* truthRow = sTruth->data.S16[row]; + psS16* outRow = sOut->data.S16[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + psError(PS_ERR_UNKNOWN, true,"Short Image mismatch (%d vs %d) " + "at %d,%d.", + outRow[col], truthRow[col],col,row); + fail = true; + } + } + } + } + } + + + if (fBiTruth == NULL) { + psError(PS_ERR_UNKNOWN, true,"verified psF32 Bi image failed to be read (%d deg. rotation)", + rot); + fail = true; + } else { + if (fBiTruth->numRows != fBiOut->numRows || fBiTruth->numCols != fBiOut->numCols) { + psError(PS_ERR_UNKNOWN, true,"Rotated float image size did not match truth " + "image for %d deg rotation (%dx%d vs %dx%d). BILINEAR", + rot,fBiOut->numCols,fBiOut->numRows,fBiTruth->numCols,fBiTruth->numRows); + fail = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psF32* truthRow = fBiTruth->data.F32[row]; + psF32* outRow = fBiOut->data.F32[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + psError(PS_ERR_UNKNOWN, true,"Float Image mismatch (%f vs %f) at %d,%d. BILINEAR", + outRow[col], truthRow[col],col,row); + fail = true; + } + } + } + } + } + + if (sBiTruth == NULL) { + psError(PS_ERR_UNKNOWN, true,"verified psS16 image failed to be read " + "(%d deg. rotation) BILINEAR",rot); + fail = true; + } else { + if (sBiTruth->numRows != sBiOut->numRows || + sBiTruth->numCols != sBiOut->numCols) { + psError(PS_ERR_UNKNOWN, true,"Rotated psS16 image size did not match truth " + "image for %d deg rotation. BILINEAR",rot); + fail = true; + } else { + for (psS32 row=0;rownumRows;row++) { + psS16* truthRow = sBiTruth->data.S16[row]; + psS16* outRow = sBiOut->data.S16[row]; + for (psS32 col=0;colnumCols;col++) { + if (fabsf(truthRow[col]-outRow[col]) > 1) { + psError(PS_ERR_UNKNOWN, true,"Short Image mismatch (%d vs %d) " + "at %d,%d. BILINEAR", + outRow[col], truthRow[col],col,row); + fail = true; + } + } + } + } + } + + index++; + } + + if (fail) { + psError(PS_ERR_UNKNOWN, true,"One or more images didn't match truth or truth did " + "not exist."); + return 10; + } + + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameter input is null. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + fOut = psImageRotate(fOut,NULL,0,0,PS_INTERPOLATE_FLAT); + if (fOut != NULL) { + psError(PS_ERR_UNKNOWN, true,"NULL wasn't returned though the input image was NULL."); + return 3; + } + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the specified interpolation mode is invalid + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for invalid " + "interpolation type."); + fOut = psImageRotate(fOut, fImg, 33, 0, -1); + if (fOut != NULL) { + psError(PS_ERR_UNKNOWN, true,"NULL wasn't returned though the interpolation mode " + "is invalid."); + return 4; + } + + psFree(sOut); + psFree(fImg); + psFree(sImg); + psFree(fTruth); + psFree(sTruth); + psFree(sBiOut); + psFree(fBiTruth); + psFree(sBiTruth); + psFree(fBiOut); + + psFree(fOutFile); + psFree(sOutFile); + psFree(fBiOutFile); + psFree(sBiOutFile); + + psFree(fTruthFile); + psFree(sTruthFile); + psFree(fBiTruthFile); + psFree(sBiTruthFile); + + return 0; +} + +static psS32 testImageShift(void) +{ + /* psImageShift: + + This functions shall generate a new psImage structure by shifting the + input psImage structure a specified number of pixels in the horizontal + and/or vertical directions. + + Verify the returned psImage structure contains expected values, if the + input psImage structure contains known values and a know shift in the + vertical and/or horizontal directions. Cases should include no shift, + vertical only(up,down), horizontal only(right, left), and combination + shift. Cases should include fractional shifts. Comparison of expected + values should include a delta to allow for testing on different + platforms. + + Verify the returned psImage structure contains values for pixels not in + the original image set to the input parameter exposed. + + */ + + psS32 retVal=0; + + // integer shift + retVal |= testImageShiftCase(64,128,0.0f,0.0f); + retVal |= testImageShiftCase(64,128,0.0f,16.0f); + retVal |= testImageShiftCase(64,128,0.0f,-16.0f); + retVal |= testImageShiftCase(64,128,32.0f,0.0f); + retVal |= testImageShiftCase(64,128,-32.0f,0.0f); + retVal |= testImageShiftCase(64,128,32.0f,16.0f); + retVal |= testImageShiftCase(64,128,32.0f,-16.0f); + retVal |= testImageShiftCase(64,128,-32.0f,16.0f); + retVal |= testImageShiftCase(64,128,-32.0f,-16.0f); + + if (retVal != 0) { + return retVal; + } + + // fractional shift + retVal |= testImageShiftCase(64,128,0.0f,16.4f); + retVal |= testImageShiftCase(64,128,0.0f,-16.4f); + retVal |= testImageShiftCase(64,128,32.7f,0.0f); + retVal |= testImageShiftCase(64,128,-32.7f,0.0f); + retVal |= testImageShiftCase(64,128,32.6f,16.2f); + retVal |= testImageShiftCase(64,128,32.6f,-16.2f); + retVal |= testImageShiftCase(64,128,-32.6f,16.2f); + retVal |= testImageShiftCase(64,128,-32.6f,-16.2f); + + if (retVal != 0) { + return retVal; + } + + /* + Verify the returned psImage structure pointer is equal to the input + parameter out if provided. + */ + psImage* fImg = psImageAlloc(32,32,PS_TYPE_F32); + psImage* fRecycle = psImageAlloc(32,32,PS_TYPE_F32); + psImage* fOut = psImageShift(fRecycle, fImg, 8,8, NAN, PS_INTERPOLATE_FLAT); + + if (fRecycle != fOut) { + psError(PS_ERR_UNKNOWN, true,"psImageShift didn't recycle my image?"); + return 10; + } + + /* + Verify the returned psImage structure pointer is null and program + execution doesn't stop, if the input psImage structure pointer is null. + */ + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error..."); + fOut = psImageShift(fOut,NULL,8,8,NAN,PS_INTERPOLATE_FLAT); + if (fOut != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageShift didn't return NULL given a NULL input image."); + return 11; + } + + // Verify the returned psImage structure is null and program execution + // doesn't stop, if the specified interpolation mode is invalid. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for invalid interpolation mode."); + fOut = psImageShift(fOut,fImg,8,8,NAN,-1); + if (fOut != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psImageShift didn't return NULL given an invalid interpolation mode."); + return 12; + } + + psFree(fImg); + + return 0; +} + +static psS32 testImageShiftCase(psS32 cols, + psS32 rows, + float colShift, + float rowShift) +{ + psImage* fOut = NULL; + psImage* sOut = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"Testing psImageShift with a %dx%d image for " + "a shift of %g,%g.",cols,rows,colShift,rowShift); + + psImage* fImg = psImageAlloc(cols,rows,PS_TYPE_F32); + psImage* sImg = psImageAlloc(cols,rows,PS_TYPE_S16); + psImage* fBiOut = psImageAlloc(cols,rows,PS_TYPE_F32); + psImage* sBiOut = psImageAlloc(cols,rows,PS_TYPE_S16); + + for(psS32 row=0;rowdata.F32[row]; + psS16* sRow = sImg->data.S16[row]; + for (psS32 col=0;coldata.F32[row]; + psS16* sRow = sOut->data.S16[row]; + psF32* fBiRow = fBiOut->data.F32[row]; + psS16* sBiRow = sBiOut->data.S16[row]; + + for (psS32 col=0;col FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"Float image not shifted correctly at %d,%d (%g vs %g)", + col,row,fRow[col],fValue); + return 1; + } + if (sRow[col] != sValue) { + psError(PS_ERR_UNKNOWN, true,"Short image not shifted correctly at %d,%d (%d vs %d)", + col,row,sRow[col],sValue); + return 2; + } + if (fabsf(fBiRow[col] - fBiValue) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"Float image not shifted correctly at %d,%d (%g vs %g)", + col,row,fBiRow[col],fBiValue); + return 1; + } + if (sBiRow[col] != sBiValue) { + psError(PS_ERR_UNKNOWN, true,"Short image not shifted correctly at %d,%d (%d vs %d)", + col,row,sBiRow[col],sBiValue); + return 2; + } + } + } + + psFree(fImg); + psFree(sImg); + psFree(fOut); + psFree(sOut); + psFree(fBiOut); + psFree(sBiOut); + + return 0; +} + +static psS32 testImageResample(void) +{ + + psS32 rows = 60; + psS32 cols = 80; + psImage* result = NULL; + psS32 scale = 4; + psErr* err; + + psImage* image = psImageAlloc(cols,rows,PS_TYPE_F32); + for(psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;coltype.type != PS_TYPE_F32) { + psLogMsg(__func__,PS_LOG_ERROR,"unexpected type"); + return 3; + } + + + if (result->numCols != image->numCols*scale || + result->numRows != image->numRows*scale) { + psLogMsg(__func__,PS_LOG_ERROR,"The size of the result is %dx%d, but %dx%d was expected.", + result->numCols,result->numRows, + image->numCols*scale, image->numRows*scale); + return 4; + } + + psF32 truthValue; + for(psS32 row=0;rownumRows;row++) { + for (psS32 col=0;colnumCols;col++) { + truthValue = psImagePixelInterpolate(image, + (float)col/(float)scale,(float)row/(float)scale, + NULL,0,-1,PS_INTERPOLATE_FLAT); + if (fabs(truthValue - result->data.F32[row][col]) > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR,"value bad at (%d,%d). Got %g, expected %g.", + col,row,result->data.F32[row][col], truthValue); + return 5; + } + } + } + + // verify that image=null is handled properly. + psErrorClear(); + result = psImageResample(result,NULL,scale,PS_INTERPOLATE_FLAT); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "return was not NULL, as expected."); + return 6; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "error message was not appropriate type."); + return 7; + } + psFree(err); + + // verify that scale < 1 is handled properly + psErrorClear(); + result = psImageResample(result,image,0,PS_INTERPOLATE_FLAT); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "return was not NULL, as expected."); + return 8; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "error message was not appropriate type."); + return 9; + } + psFree(err); + + // verify that invalid interpolation mode is handled properly + psErrorClear(); + result = psImageResample(result,image,2,-1); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "return was not NULL, as expected."); + return 10; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "error message was not appropriate type."); + return 11; + } + psFree(err); + + // Verify that that an invalid image type is handled properly + psErrorClear(); + psImage* invImage = psImageAlloc(cols,rows,PS_TYPE_BOOL); + memset(invImage->p_rawDataBuffer,0,cols*rows*PSELEMTYPE_SIZEOF(PS_TYPE_BOOL)); // make sure the image is of all NULLs + result = psImageResample(result,invImage,2,PS_INTERPOLATE_FLAT); + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"return was not NULL, as expected."); + return 20; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_TYPE) { + psLogMsg(__func__,PS_LOG_ERROR,"error message was not appropriate type."); + return 21; + } + psFree(err); + + psFree(image); + psFree(result); + psFree(invImage); + + return 0; +} + +static psS32 testImageTransform(void) +{ + int cols = 16; + int rows = 32; + + psPlaneTransform* trans = psPlaneTransformAlloc(2,2); + trans->x->coeff[1][0] = 0.5; + trans->y->coeff[0][1] = 1.5; + + psImage* in = psImageAlloc(cols,rows,PS_TYPE_F32); + for (psS32 row=0;rowdata.F32[row]; + for (psS32 col=0;colcol0 = 1; + psImage* out = psImageTransform(NULL, + NULL, + in, + NULL, + 0, + trans, + psRegionSet(1,1+cols*2,0,rows*2), + NULL, + PS_INTERPOLATE_FLAT, + -1); + + if (out == NULL) { + psError(PS_ERR_UNKNOWN, false, + "out == NULL"); + return 1; + } + if (out->type.type != PS_TYPE_F32) { + psError(PS_ERR_UNKNOWN, false, + "out->type.type != PS_TYPE_F32, out->type.type == %d", + out->type.type); + return 2; + } + if (out->numRows != rows*2 || out->numCols != cols*2) { + psError(PS_ERR_UNKNOWN, false, + "out size is %dx%d, not %dx%d", + out->numCols, out->numRows, cols*2, rows); + return 3; + } + + for (psS32 row=0;rownumRows;row++) { + psF32* outRow = out->data.F32[row]; + for (psS32 col=0;colx->coeff[1][0]+trans->x->coeff[0][0]+1, + row*trans->y->coeff[0][1]+trans->y->coeff[0][0], + NULL, 0, + -1); + if (fabsf(outRow[col] - inValue) > 0.01) { + psError(PS_ERR_UNKNOWN, false, + "out at %d,%d was %g, expected %g", + col,row,outRow[col], inValue); + return 4; + } + } + } + + psFree(out); + psFree(in); + psFree(trans); + return 0; +} Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageInterpolate.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageInterpolate.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageInterpolate.c (revision 12167) @@ -0,0 +1,282 @@ +/** @file tst_psImageInterpolate.c + * + * @brief Contains the tests for psImagePixelInterpolate + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ + * $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "psTest.h" +#include "pslib_strict.h" + +#define GENIMAGE(img,c,r,TYP,valueFcn) \ +img = psImageAlloc(c,r,PS_TYPE_##TYP); \ +for(psU32 row=0; rowdata.TYP[row]; \ + for(psU32 col=0; colFLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN,true,"Return value is not as expected."); \ + return 1; \ +} + +#define CHECK_INTERP_BY_TYPE(TYPE) \ +GENIMAGE(img1,10,10,TYPE,row+col) \ +CHECK_INTERP_VALUE(img1,1.9,1.6,NULL,0,0,FLAT,2.0) \ +CHECK_INTERP_VALUE(img1,4.0,2.0,NULL,0,0,BILINEAR,5.0) \ +psFree(img1); + +static psS32 testInterpolateFlatBilinear(void); +static psS32 testInterpolateError(void); +static psS32 testInterpolateMaskFlatBilinear(void); +static psS32 testInterpolate1D(void); + +testDescription tests[] = { + {testInterpolateFlatBilinear,999,"psImagePixelInterpolate",0,false}, + {testInterpolateError,999,"psImagePixelInterpolate",0,false}, + {testInterpolateMaskFlatBilinear,999,"psImagePixelInterpolate",0,false}, + {testInterpolate1D,999,"psImagePixelInterpolate",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if ( !runTestSuite(stderr,"psImagePixelInterpolate",tests,argc,argv) ) { + return 1; + } else { + return 0; + } +} + +psS32 testInterpolateFlatBilinear(void) +{ + psImage* img1; + psF32 val = 0; + + // Perform simple(four neighbor) FLAT interpolation for all types + // Perform bilinear interpolation for all types + CHECK_INTERP_BY_TYPE(S8) + CHECK_INTERP_BY_TYPE(S16) + CHECK_INTERP_BY_TYPE(S32) + CHECK_INTERP_BY_TYPE(S64) + CHECK_INTERP_BY_TYPE(U8) + CHECK_INTERP_BY_TYPE(U16) + CHECK_INTERP_BY_TYPE(U32) + CHECK_INTERP_BY_TYPE(U64) + CHECK_INTERP_BY_TYPE(F32) + CHECK_INTERP_BY_TYPE(F64) + CHECK_INTERP_BY_TYPE(C32) + CHECK_INTERP_BY_TYPE(C64) + + return 0; +} + +psS32 testInterpolateError(void) +{ + psF32 val = 0; + psImage* img1 = NULL; + + // Perform interpolation with NULL input image and verify return and error message + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + val = psImagePixelInterpolate(img1,1.2,1.2,NULL,0,5.0,PS_INTERPOLATE_FLAT); + if(val != 5.0) { + psError(PS_ERR_UNKNOWN,true,"Did not return the unexposed value"); + return 10; + } + + // Perform interpolation with invalid input image type + img1 = psImageAlloc(10,10,PS_TYPE_BOOL); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + val = psImagePixelInterpolate(img1,1.2,1.2,NULL,0,10.0,PS_INTERPOLATE_FLAT); + if(val != 10.0) { + psError(PS_ERR_UNKNOWN,true,"Did not return the unexposed value"); + return 11; + } + + // Perform interpolation with invalid method + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + val = psImagePixelInterpolate(img1,1.2,1.2,NULL,0,10.0,PS_INTERPOLATE_BILINEAR+1); + if(val != 10.0) { + psError(PS_ERR_UNKNOWN,true,"Did not return the unexposed value"); + return 12; + } + + psFree(img1); + + return 0; +} + +// The following assumptions about the test image are: +// +// col +// 0 1 2 3 4 5 6 7 ... +// +// row 0 0 1 2 3 4 5 6 7 +// row 1 1 2 3 4 5 6 7 8 +// row 2 2 3 4 5 6 7 8 9 +// ... + +psS32 testInterpolateMaskFlatBilinear(void) +{ + psImage* img1 = NULL; + psImage* msk1 = NULL; + psF32 val = 0; + + // Perform interpolate with mask and mask value set at nearest pixel to verify + // the unexposed value is return + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][1] = 1; + CHECK_INTERP_VALUE(img1,1.9,1.6,msk1,1,10.0,FLAT,10.0) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (upper left pixel) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.25) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (upper right pixel) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.75) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (lower left pixel) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.25) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (lower right pixel) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.75) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (upper pixels) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.5) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (lower pixels) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.5) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (left pixels) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.5) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask and one mask value for bilinear (right pixels) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.5) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask only one valid pixel (upper left) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,4.0) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask only one valid pixel (upper right) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.0) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask only one valid pixel (lower left) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,5.0) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask only one valid pixel (lower right) + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,6.0) + psFree(msk1); + psFree(img1); + + // Perform interpolate with mask no valid pixels + GENIMAGE(img1,10,10,F32,row+col) + GENIMAGE(msk1,10,10,U8,0) + msk1->data.U8[1][3] = 1; + msk1->data.U8[1][4] = 1; + msk1->data.U8[2][3] = 1; + msk1->data.U8[2][4] = 1; + CHECK_INTERP_VALUE(img1,4.0,2.0,msk1,1,0,BILINEAR,0.0) + psFree(msk1); + psFree(img1); + return 0; +} + +// Perform interpolation for a 1D image +psS32 testInterpolate1D(void) +{ + psImage* img1 = NULL; + psF32 val = 0; + + GENIMAGE(img1,10,1,F32,row+col) + CHECK_INTERP_VALUE(img1,4.0,0.0,NULL,0,100.0,BILINEAR,3.5) + + psFree(img1); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageMaskOps.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageMaskOps.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageMaskOps.c (revision 12167) @@ -0,0 +1,222 @@ +/** @file tst_psImageMaskOps.c + * + * @brief Contains the tests for psMaskOps.[ch] + * + * + * @author David Robbins, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-10-08 03:51:20 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include +#include +#include // for memset +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageKeepMask(void); +static psS32 testImageGrowMask(void); + +testDescription tests[] = { + {testImageKeepMask,0,"psImageKeep and Mask",0,false}, + {testImageGrowMask,0,"psImageGrowMask",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + +psS32 testImageKeepMask(void) +{ + //psImageMaskRegion + //psImageKeepRegion + //psImageMaskCircle + //psImageKeepCircle + psImage *in = psImageAlloc(3,3,PS_TYPE_MASK); + psRegion reg; + reg.x0 = 0; + reg.x1 = 1; + reg.y0 = 0; + reg.y1 = 1; + psMaskType mask = 2; + in->data.PS_TYPE_MASK_DATA[0][0] = 2; + in->data.PS_TYPE_MASK_DATA[0][1] = 0; + in->data.PS_TYPE_MASK_DATA[0][2] = 1; + in->data.PS_TYPE_MASK_DATA[1][0] = 4; + in->data.PS_TYPE_MASK_DATA[1][1] = 0; + in->data.PS_TYPE_MASK_DATA[1][2] = 3; + in->data.PS_TYPE_MASK_DATA[2][0] = 2; + in->data.PS_TYPE_MASK_DATA[2][1] = 1; + in->data.PS_TYPE_MASK_DATA[2][2] = 2; + + printf("\n Mask Region------"); + psImageMaskRegion(in, reg, "|", mask); + for(int i = 0; i < 3; i++) { + for (int j = 0; j < 3; j++) { + printf("\nin->data.u8 [i][j] i=%d, j=%d = %u", i, j, in->data.PS_TYPE_MASK_DATA[i][j]); + } + } + + in->data.PS_TYPE_MASK_DATA[0][0] = 2; + in->data.PS_TYPE_MASK_DATA[0][1] = 0; + in->data.PS_TYPE_MASK_DATA[0][2] = 1; + in->data.PS_TYPE_MASK_DATA[1][0] = 4; + in->data.PS_TYPE_MASK_DATA[1][1] = 0; + in->data.PS_TYPE_MASK_DATA[1][2] = 3; + in->data.PS_TYPE_MASK_DATA[2][0] = 2; + in->data.PS_TYPE_MASK_DATA[2][1] = 1; + in->data.PS_TYPE_MASK_DATA[2][2] = 2; + psImageKeepRegion(in, reg, "AND", mask); + printf("\n Keep Region------"); + for(int i = 0; i < 3; i++) { + for (int j = 0; j < 3; j++) { + printf("\nin->data.u8 [i][j] i=%d, j=%d = %u", i, j, in->data.PS_TYPE_MASK_DATA[i][j]); + } + } + + //Mask Circle and Keep Circle Functions + in->data.PS_TYPE_MASK_DATA[0][0] = 2; + in->data.PS_TYPE_MASK_DATA[0][1] = 0; + in->data.PS_TYPE_MASK_DATA[0][2] = 1; + in->data.PS_TYPE_MASK_DATA[1][0] = 4; + in->data.PS_TYPE_MASK_DATA[1][1] = 0; + in->data.PS_TYPE_MASK_DATA[1][2] = 3; + in->data.PS_TYPE_MASK_DATA[2][0] = 2; + in->data.PS_TYPE_MASK_DATA[2][1] = 1; + in->data.PS_TYPE_MASK_DATA[2][2] = 2; + psImageMaskCircle(in, 1, 1, 1, "XOR", mask); + printf("\n Mask Circle------"); + for(int i = 0; i < 3; i++) { + for (int j = 0; j < 3; j++) { + printf("\nin->data.u8 [i][j] i=%d, j=%d = %u", i, j, in->data.PS_TYPE_MASK_DATA[i][j]); + } + } + + in->data.PS_TYPE_MASK_DATA[0][0] = 2; + in->data.PS_TYPE_MASK_DATA[0][1] = 0; + in->data.PS_TYPE_MASK_DATA[0][2] = 1; + in->data.PS_TYPE_MASK_DATA[1][0] = 4; + in->data.PS_TYPE_MASK_DATA[1][1] = 0; + in->data.PS_TYPE_MASK_DATA[1][2] = 3; + in->data.PS_TYPE_MASK_DATA[2][0] = 2; + in->data.PS_TYPE_MASK_DATA[2][1] = 1; + in->data.PS_TYPE_MASK_DATA[2][2] = 2; + psImageKeepCircle(in, 1, 1, 1, "=", mask); + printf("\n Keep Circle------"); + for(int i = 0; i < 3; i++) { + for (int j = 0; j < 3; j++) { + printf("\nin->data.u8 [i][j] i=%d, j=%d = %u", i, j, in->data.PS_TYPE_MASK_DATA[i][j]); + } + } + fflush(stdout); + + //Error Checks + //incorrect logical operation + printf("\n"); + psImageKeepRegion(in, reg, "+", mask); + //null image + psImage *none = NULL; + psImageMaskCircle(none, 1, 1, 1, "&", mask); + + psFree(in); + return 0; +} + +psS32 testImageGrowMask(void) +{ + psImage *in = NULL; + psImage *out = NULL; + psImage *test = NULL; + psMaskType maskVal = 0; + psMaskType growVal = 0; + unsigned int growSize = 0; + //return null for null input image + out = psImageGrowMask(out, in, maskVal, growSize, growVal); + if (out != NULL) { + fprintf(stderr, + "psImageGrowMask failed to return NULL for NULL image input.\n"); + return 1; + } + in = psImageAlloc(5, 5, PS_TYPE_MASK); + //return null for incompatible image size + test = psImageAlloc(2, 2, PS_TYPE_MASK); + out = psImageGrowMask(test, in, maskVal, growSize, growVal); + if (out != NULL) { + fprintf(stderr, + "psImageGrowMask failed to return NULL for incompatible image size.\n"); + return 2; + } + //return null for incompatible out image type + test = psImageRecycle(test, 5, 5, PS_TYPE_F32); + out = psImageGrowMask(test, in, maskVal, growSize, growVal); + if (out != NULL) { + fprintf(stderr, + "psImageGrowMask failed to return NULL for incompatible output image type.\n"); + return 3; + } + //return NULL for input image that doesn't match PS_TYPE_MASK + in = psImageRecycle(in, 5, 5, PS_TYPE_F32); + out = psImageGrowMask(test, in, maskVal, growSize, growVal); + if (out != NULL) { + fprintf(stderr, + "psImageGrowMask failed to return NULL for incompatible input image type.\n"); + return 4; + } + //Test for valid function (image growth) + in = psImageRecycle(in, 5, 5, PS_TYPE_MASK); + in->data.PS_TYPE_MASK_DATA[0][0] = 1; + in->data.PS_TYPE_MASK_DATA[0][1] = 1; + in->data.PS_TYPE_MASK_DATA[0][2] = 1; + in->data.PS_TYPE_MASK_DATA[0][3] = 1; + in->data.PS_TYPE_MASK_DATA[0][4] = 1; + in->data.PS_TYPE_MASK_DATA[1][0] = 1; + in->data.PS_TYPE_MASK_DATA[1][1] = 1; + in->data.PS_TYPE_MASK_DATA[1][2] = 2; + in->data.PS_TYPE_MASK_DATA[1][3] = 1; + in->data.PS_TYPE_MASK_DATA[1][4] = 1; + in->data.PS_TYPE_MASK_DATA[2][0] = 1; + in->data.PS_TYPE_MASK_DATA[2][1] = 1; + in->data.PS_TYPE_MASK_DATA[2][2] = 2; + in->data.PS_TYPE_MASK_DATA[2][3] = 1; + in->data.PS_TYPE_MASK_DATA[2][4] = 1; + in->data.PS_TYPE_MASK_DATA[3][0] = 1; + in->data.PS_TYPE_MASK_DATA[3][1] = 1; + in->data.PS_TYPE_MASK_DATA[3][2] = 1; + in->data.PS_TYPE_MASK_DATA[3][3] = 1; + in->data.PS_TYPE_MASK_DATA[3][4] = 2; + in->data.PS_TYPE_MASK_DATA[4][0] = 1; + in->data.PS_TYPE_MASK_DATA[4][1] = 1; + in->data.PS_TYPE_MASK_DATA[4][2] = 1; + in->data.PS_TYPE_MASK_DATA[4][3] = 1; + in->data.PS_TYPE_MASK_DATA[4][4] = 1; + maskVal = 2; + growSize = 1; + growVal = 2; + + out = psImageGrowMask(out, in, maskVal, growSize, growVal); + //0,2 1,1 1,3 2,1 2,3 3,2 should all be 3. All other should be unchanged. + for (int i = 0; i < 5; i++) { + printf("\n "); + for (int j = 0; j < 5; j++) { + printf(" %d,%d= %d ", i, j, out->data.PS_TYPE_MASK_DATA[i][j]); + } + } + psFree(out); + psFree(in); + psFree(test); + return 0; +} Index: /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelExtract.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelExtract.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelExtract.c (revision 12167) @@ -0,0 +1,1557 @@ +/** @file tst_psImageExtraction.c +* +* @brief Contains the tests for psImageExtraction.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-16 23:12:20 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageSlice(void); +static psS32 testImageCut(void); +static psS32 testImageRadialCut(void); +static psS32 testImageRowColError(void); +static psS32 testImageRowColF32(void); +static psS32 testImageRowColF64(void); +static psS32 testImageRowColS8(void); +static psS32 testImageRowColS16(void); +static psS32 testImageRowColS32(void); +static psS32 testImageRowColS64(void); +static psS32 testImageRowColU8(void); +static psS32 testImageRowColU16(void); +static psS32 testImageRowColU32(void); +static psS32 testImageRowColU64(void); + + + +testDescription tests[] = { + {testImageSlice, 552, "psImageSlice", 0, false}, + {testImageCut, 555, "psImageCut", 0, false}, + {testImageRadialCut, 556, "psImageRadialCut", 0, false}, + {testImageRowColError, 557, "testImageRowColError", 0, false}, + {testImageRowColF32, 558, "psImageRowColF32", 0, false}, + {testImageRowColF64, 559, "psImageRowColF64", 0, false}, + {testImageRowColU8, 560, "psImageRowColU8", 0, false}, + {testImageRowColU16, 561, "psImageRowColU16", 0, false}, + {testImageRowColU32, 562, "psImageRowColU32", 0, false}, + {testImageRowColU64, 563, "psImageRowColU64", 0, false}, + {testImageRowColS8, 564, "psImageRowColS8", 0, false}, + {testImageRowColS16, 565, "psImageRowColS16", 0, false}, + {testImageRowColS32, 566, "psImageRowColS32", 0, false}, + {testImageRowColS64, 567, "psImageRowColS64", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + return ! runTestSuite( stderr, "psImage", tests, argc, argv ); +} + +psS32 testImageSlice(void) +{ + const psS32 r = 200; + const psS32 c = 300; + const psS32 m = r / 2 -1; + const psS32 n = r / 4 -1; + psVector* out = NULL; + psImage* image; + psPixels* positions = psPixelsAlloc( r ); + psImage* mask = psImageAlloc( c, r, PS_TYPE_MASK ); + psStats* stat = psStatsAlloc( PS_STAT_SAMPLE_MEDIAN ); + + /* + This function shall extract pixels from a specified region of a psImage + structure into a vector using a specified statistical method. + + Verify the returned psVector structure contains expected data, if the + input psImage input has known data and the psStats structure specifies + a known statistical method. At least two different statistical methods + should be used within a valid range of psImage data. Allow for a delta + when comparing results to allow for testing a different platforms. Two + cases should be used for each possible direction. Data region cases + should include 0x0, 1x1, Nx1, 1xN, NxN, MxN + + */ + + for ( psS32 row = 0;row < r;row++ ) { + psMaskType* maskRow = mask->data.PS_TYPE_MASK_DATA[row]; + for ( psS32 col = 0;col < c;col++ ) { + maskRow[ col ] = 0; + } + } + + #define PSIMAGESLICE_TEST1(TYPE,M,N,DIRECTION,TRUTH_SIZE,TRUTHPIX_X,TRUTHPIX_Y,TESTNUM) \ + image = psImageAlloc( c, r, PS_TYPE_##TYPE ); \ + for ( psS32 row = 0;row < r;row++ ) { \ + ps##TYPE *imageRow = image->data.TYPE[ row ]; \ + ps##TYPE rowOffset = row * 2; \ + for ( psS32 col = 0;col < c;col++ ) { \ + imageRow[ col ] = col + rowOffset; \ + } \ + } \ + image->col0 = 1; \ + image->row0 = 1; \ + out = psImageSlice(out,positions,image,mask,1, \ + psRegionSet(1+c/10,1+c/10+M,1+r/10,1+r/10+N),DIRECTION,stat); \ + \ + if (out->n != TRUTH_SIZE) { \ + psError(PS_ERR_UNKNOWN,true,"Number of results is wrong (%d, not %d)", \ + out->n,TRUTH_SIZE); \ + return TESTNUM*4+1; \ + } \ + \ + if (positions->n != TRUTH_SIZE) { \ + psError(PS_ERR_UNKNOWN,true,"Number of results for positions vector is wrong (%d, not %d)", \ + positions->n,TRUTH_SIZE); \ + return TESTNUM*4+2; \ + } \ + \ + for (psS32 i=0;in;i++) { \ + if (fabs(out->data.F64[i]-image->data.TYPE[r/10+TRUTHPIX_Y][c/10+TRUTHPIX_X]) > 1.0/(psF64)r) { \ + psError(PS_ERR_UNKNOWN,true,"Improper result at position %d. Got %g, expected %g",i, \ + out->data.F64[i],image->data.TYPE[r/10+TRUTHPIX_Y][c/10+TRUTHPIX_X]); \ + return TESTNUM*4+3; \ + } \ + if (DIRECTION == PS_CUT_X_POS || DIRECTION == PS_CUT_X_NEG) { \ + if (positions->data[i].x != c/10+TRUTHPIX_X) { \ + psError(PS_ERR_UNKNOWN,true,"Improper positions (%d vs %d) result @ %d.", \ + positions->data[i].x,c/10+TRUTHPIX_X,i); \ + return TESTNUM*4+4; \ + } \ + } else { \ + if (positions->data[i].y != r/10+TRUTHPIX_Y) { \ + psError(PS_ERR_UNKNOWN,true,"Improper positions (%d vs %d) result @ %d.", \ + positions->data[i].y,r/10+TRUTHPIX_Y,i); \ + return TESTNUM*4+4; \ + } \ + } \ + } \ + psFree(image); + + #define PSIMAGESLICE_TEST(TYPE) \ + /* test MxN case */ \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_X_POS, m, i, n / 2, 0 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_X_NEG, m, m - 1 - i, n / 2, 1 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_Y_POS, n, m / 2, i, 2 ); \ + PSIMAGESLICE_TEST1(TYPE, m, n, PS_CUT_Y_NEG, n, m / 2, n - 1 - i, 3 ); \ + \ + /* test Mx1 case */ \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_X_POS, m, i, 0, 4 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_X_NEG, m, m - 1 - i, 0, 5 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_Y_POS, 1, m / 2, 0, 6 ); \ + PSIMAGESLICE_TEST1(TYPE, m, 1, PS_CUT_Y_NEG, 1, m / 2, 0, 7 ); \ + \ + /* test 1xN case */ \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_X_POS, 1, 0, n / 2, 8 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_X_NEG, 1, 0, n / 2, 9 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_Y_POS, n, 0, i, 10 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, n, PS_CUT_Y_NEG, n, 0, n - 1 - i, 11 ); \ + \ + /* test 1x1 case */ \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_X_POS, 1, 0, 0, 12 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_X_NEG, 1, 0, 0, 13 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_Y_POS, 1, 0, 0, 14 ); \ + PSIMAGESLICE_TEST1(TYPE, 1, 1, PS_CUT_Y_NEG, 1, 0, 0, 15 ); \ + + PSIMAGESLICE_TEST(F32); + PSIMAGESLICE_TEST(F64); + PSIMAGESLICE_TEST(U16); + + image = psImageAlloc( c, r, PS_TYPE_F32 ); + + /* + Verify the returned psVector structure pointer is null and program + execution doesn't stop, if input psImage input is null. + + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, + NULL, NULL, + NULL, 0, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat ); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving a NULL image, psImageSlice didn't return NULL as expected" ); + return 101; + } + + + /* + Verify the returned psVector structure pointer is null and program + execution doesn't stop, if input psStats stats is null. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, + NULL, image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + NULL ); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving a NULL stat struct, psImageSlice didn't return NULL as expected" ); + return 102; + } + /* + + Verify the returned psVector structure pointer is null and program + executions doesn't stop, if the input direction is not set to one of + the two valid values. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + 5, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving a bogus direction flag, psImageSlice didn't return NULL as expected" ); + return 103; + } + + /* + Verify the returned psVector structure pointer is null and program + execution doesn't stop, if the input nrow and/or ncol are zero. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, + NULL, + image, + mask, 1, + psRegionSet(c/10, c/10, r/10, r/10), + PS_CUT_X_POS, + stat ); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving a 0x0 region, psImageSlice didn't return NULL as expected" ); + return 104; + } + + /* + Verify the returned psVector structure pointer is null and program + execution doesn't stop, if the inputs row, col, nrow, ncol specify a + regions of data that is not within the input psImage structure. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c+1, c+2, r/10, r/10 + 10), + PS_CUT_X_POS, + stat ); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving an invalid x position, psImageSlice didn't return NULL as expected" ); + return 105; + } + + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r+1,r+5), + PS_CUT_X_POS, + stat ); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving an invalid y position, psImageSlice didn't return NULL as expected" ); + return 106; + } + + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c+1, r/10, r/10+1), + PS_CUT_X_POS, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving an invalid numCols, psImageSlice didn't return NULL as expected" ); + return 107; + } + + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r + 1), + PS_CUT_X_POS, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving an invalid numRows, psImageSlice didn't return NULL as expected" ); + return 108; + } + + /* + Verify the returned psVector structure pointer is null and program + execution doesn't stop, if the input psStat structure member options is + zero which indicates no statistic method specified. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error." ); + stat->options = 0; + out = psImageSlice( out, NULL, + image, + mask, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10+1), + PS_CUT_X_POS, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Giving an invalid numRows, psImageSlice didn't return NULL as expected" ); + return 109; + } + + /* Verify that a mask of different size than the input image returns null and program + execution doesn't stop. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error mask size != image size."); + stat->options = PS_STAT_SAMPLE_MEDIAN; + psImage* maskSz = psImageAlloc( r, c, PS_TYPE_MASK ); + out = psImageSlice( out, NULL, + image, + maskSz, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Mask size different than image size didn't return NULL as expected" ); + return 110; + } + + /* Verify the a invalid type mask returns null and program execution doesn't stop. + */ + psLogMsg( __func__, PS_LOG_INFO, "Following should be an error invalid mask type."); + psImage* maskS8 = psImageAlloc( c, r, PS_TYPE_S8 ); + out = psImageSlice( out, NULL, + image, + maskS8, 1, + psRegionSet(c/10, c/10 + 1, r/10, r/10 + 1), + PS_CUT_X_POS, + stat); + if ( out != NULL ) { + psError( PS_ERR_UNKNOWN,true, "Mask invalid type didn't return NULL as expected."); + return 111; + } + + //Added tests after subimage changes. + psFree(image); + image = psImageAlloc( c, r, PS_TYPE_F64 ); + for ( psS32 row = 0;row < r;row++ ) { + psF64 *imageRow = image->data.F64[ row ]; + psF64 rowOffset = row * 2; + for ( psS32 col = 0;col < c;col++ ) { + imageRow[ col ] = col + rowOffset; + } + } + image->col0 = 1; + image->row0 = 1; + psFree(out); + out = NULL; + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageSlice failed to return the correct psVector. Got NULL instead.\n"); + return 112; + } + psFree(out); + out = NULL; + //Return NULL for incorrect image inputs. + image->row0 = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 113; + } + image->col0 = -1; + image->row0 = 1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 114; + } + image->col0 = 1; + //Return NULL for incorrect region inputs. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(0,c,1,r),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 115; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,r+1),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 116; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,c,1,-r-2),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 117; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(c,1,1,r),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 118; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,1,1,1),PS_CUT_X_POS,stat); + if (out != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return NULL for invalid specified input.\n"); + return 119; + } + + //Make sure that regions match appropriately... + out = psImageSlice(out,positions,image,mask,1, + psRegionSet(1,-1,1,-1),PS_CUT_Y_NEG,stat); + psVector *out2 = NULL; + out2 = psImageSlice(out2,positions,image,mask,1, + psRegionSet(0,0,0,0),PS_CUT_Y_NEG,stat); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageSlice incorrectly returned NULL for valid inputs.\n"); + return 120; + } else if (out2 == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageSlice incorrectly returned NULL for valid inputs.\n"); + return 121; + } else if (out->n != out2->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return matching vectors for equivalent inputs.\n"); + return 122; + } else if (out->data.F64[out->n-1] != out2->data.F64[out2->n-1] ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSlice failed to return matching vectors for equivalent inputs.\n"); + return 123; + } + psFree(out2); + + psFree( image ); + psFree( positions ); + psFree( mask ); + psFree( out ); + psFree( stat ); + psFree( maskS8 ); + psFree( maskSz ); + + return 0; + +} + +static psS32 testImageCut(void) +{ + psS32 c = 300; + psS32 r = 200; + psS32 numPoints = 15; + float startCol[] = { 40,150, 40, 0,280, 40,280, -1,300, 20, 20, 20, 20, 20, 20}; + float endCol[] = {240,150,240,299, 40,240, 40,240,240, -1,300,240,240,240,240}; + float startRow[] = { 20, 10,100, 0, 20,180,180, 10, 10, 10, 10, -1,200, 10, 10}; + float endRow[] = {160,180,100,199,160, 10, 10,180,180,180,180,180,180, -1,200}; + psBool success[] = {true,true,true,true,true,true,true,false,false,false,false,false,false,false,false}; + psU32 length = 100; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + psImage* mask = psImageAlloc(c,r,PS_TYPE_MASK); + for (psS32 row = 0; row < image->numRows; row++) { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = (psF32)col + (psF32)row/1000.0f; + if ((row & 0x0F) == 0) { + mask->data.PS_TYPE_MASK_DATA[row][col] = 1; + } else { + mask->data.PS_TYPE_MASK_DATA[row][col] = 0; + } + } + } + psVector* rows = psVectorAlloc(length,PS_TYPE_F32); + psVector* cols = psVectorAlloc(length,PS_TYPE_F32); + + psVector* result = NULL; + for (psS32 n = 0; n < numPoints; n++) { + psVector* orig = result; + if (! success[n]) { + psLogMsg(__func__,PS_LOG_INFO,"The following should be an error."); + } + if (n == 1) { + result = psImageCut(result, + cols,rows, + image, + NULL,0, + psRegionSet(startCol[n], endCol[n], startRow[n],endRow[n]), + length, + PS_INTERPOLATE_FLAT); + } else { + result = psImageCut(result, + cols,rows, + image, + mask,1, + psRegionSet(startCol[n], endCol[n], startRow[n], endRow[n]), + length, + PS_INTERPOLATE_FLAT); + } + + if (success[n]) { + if (result == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut returned NULL instead of a valid result."); + return n*10+1; + } + + if (orig != NULL && orig != result) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut didn't recycle the out parameter properly."); + return n*10+2; + } + + float deltaRow = (endRow[n]-startRow[n])/(length-1); + float deltaCol = (endCol[n]-startCol[n])/(length-1); + psF32 truth; + for (psS32 i = 0; i < length; i++) { + float x = (float)startCol[n]+(float)i*deltaCol; + float y = (float)startRow[n]+(float)i*deltaRow; + if (n == 1) { + truth = psImagePixelInterpolate( image, x, y, + NULL,0,0,PS_INTERPOLATE_FLAT); + } else { + truth = psImagePixelInterpolate( image, x, y, + mask,1,0,PS_INTERPOLATE_FLAT); + } + if (fabs(result->data.F32[i]-truth) > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR, + "Bad result in position %d; Found %g but expected %g.", + i, result->data.F32[i], truth); + return n*10+5; + } + if (fabsf(x - cols->data.F32[i]) > FLT_EPSILON || + fabsf(y - rows->data.F32[i]) > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR, + "Bad resulting col/row at index %d; Found (%g,%g) but expected (%g,%g).", + i, cols->data.F32[i], rows->data.F32[i], x, y); + return n*10+6; + } + } + } else { + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not return NULL with a cut of (%g,%g)->(%g,%g).", + startCol[n],startRow[n],endCol[n],endRow[n]); + return n*10+7; + } + psErr* err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not generate proper error message."); + return 105; + } + psFree(err); + } + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error (NULL image)."); + result = psImageCut(result, + cols,rows, + NULL, + mask,1, + psRegionSet(startCol[0], endCol[0], startRow[0], endRow[0]), + length, + PS_INTERPOLATE_FLAT); + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not return NULL given NULL image."); + return 100; + } + psErr* err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not generate proper error message given NULL image."); + return 101; + } + psFree(err); + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error (length=0)."); + result = psImageCut(result, + cols,rows, + image, + mask,1, + psRegionSet(startCol[0], endCol[0], startRow[0], endRow[0]), + 0, + PS_INTERPOLATE_FLAT); + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not return NULL given length=0."); + return 102; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageCut did not generate proper error message given length=0."); + return 103; + } + psFree(err); + + psFree(result); + psFree(image); + psFree(mask); + psFree(rows); + psFree(cols); + + return 0; +} + +static psS32 testImageRadialCut(void) +{ + psS32 c = 300; + psS32 r = 200; + psS32 centerX = c/2; + psS32 centerY = r/2; + psErr* err = NULL; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + psImage* mask = psImageAlloc(c,r,PS_TYPE_MASK); + for (psS32 row = 0; row < image->numRows; row++) { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = sqrtf((col-centerX)*(col-centerX)+(row-centerY)*(row-centerY)); + if ((row & 0x0F) == 0) { + mask->data.PS_TYPE_MASK_DATA[row][col] = 1; + } else { + mask->data.PS_TYPE_MASK_DATA[row][col] = 0; + } + } + } + + psStats* stat = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector* radii = psVectorAlloc(10,PS_TYPE_F32); + for (psS32 i=0; i < 10; i++) { + radii->data.F32[i] = 10+i*10; + radii->n++; + } + + psVector* result = NULL; + + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,stat); + + if (result == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value of NULL unexpected."); + return 1; + } + + if (result->type.type != PS_TYPE_F64) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return type not psF64, as expected."); + return 2; + } + + for (psS32 i=0; i < 9; i++) { + if (fabs(result->data.F64[i] - (15.0+i*10)) > 1) { + psLogMsg(__func__,PS_LOG_ERROR, + "Result was not as expected for radii #%d (%g, expected %d +/- 1)", + result->data.F64[i], (15.0+i*10) ); + return 3+i; + } + } + + // again, but without mask + psVector* orig = result; + result = psImageRadialCut(result,image,NULL,1,centerX,centerY,radii,stat); + + if (result == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value of NULL unexpected."); + return 12; + } + + if (result != orig) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value of is not same as input parameter 'out'."); + return 13; + } + + for (psS32 i=0; i < 9; i++) { + if (fabs(result->data.F64[i] - (15.0+i*10)) > 1) { + psLogMsg(__func__,PS_LOG_ERROR, + "Result was not as expected for radii #%d (%g, expected %d +/- 1)", + result->data.F64[i], (15.0+i*10) ); + return 14+i; + } + } + + // NULL input image... + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,NULL,NULL,1,centerX,centerY,radii,stat); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 23; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 24; + } + psFree(err); + + // NULL input radii... + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image,mask,1,centerX,centerY,NULL,stat); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 23; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 24; + } + psFree(err); + + // NULL input stat... + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,NULL); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 23; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 24; + } + psFree(err); + + // Bad center X + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image,mask,1, + c+1,centerY,radii,stat); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 25; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 26; + } + psFree(err); + + // Bad center Y + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image,mask,1, + centerX,r+1,radii,stat); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 27; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 28; + } + psFree(err); + + // Bad mask type (N.B., swapped image/mask to do this) + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,mask,image,1, + centerX,r+1,radii,stat); + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 29; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_TYPE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 30; + } + psFree(err); + + // Bad mask size + psImage* mask2 = psImageAlloc(c/2,r/2,PS_TYPE_MASK); + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image, mask2, 1, + centerX,centerY,radii,stat); + psFree(mask2); + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 31; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_SIZE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 32; + } + psFree(err); + + // Bad radii size + psVector* radii2 = psVectorAlloc(1,PS_TYPE_MASK); + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image, mask, 1, + centerX,centerY,radii2,stat); + psFree(radii2); + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 33; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_SIZE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 34; + } + psFree(err); + + // bad input stat option... + stat->options = 0; + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + result = psImageRadialCut(result,image,mask,1,centerX,centerY,radii,stat); + stat->options = PS_STAT_SAMPLE_MEAN; + + if (result != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not NULL as expected."); + return 35; + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageRadialCut did not generate proper error message."); + return 36; + } + psFree(err); + + psFree(image); + psFree(mask); + psFree(radii); + psFree(stat); + psFree(result); + + return 0; +} + +psS32 testImageRowColError(void) +{ + psImage *image = NULL; + psVector *out = NULL; + int num = 0; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 1; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 1; + } + + image = psImageAlloc(3, 3, PS_TYPE_F64); + + //Test for invalid row0. + *(psS32*)&(image->row0) = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 2; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 2; + } + + //Test for invalid col0. + *(psS32*)&(image->row0) = 5; + *(psS32*)&(image->col0) = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 3; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 3; + } + + //Test for invalid numRows + *(psS32*)&(image->col0) = 10; + *(int*)&(image->numRows) = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 4; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 4; + } + //Test for invalid numCols + *(int*)&(image->numRows) = 3; + *(int*)&(image->numCols) = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 5; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 5; + } + //Test for invalid row/col number specified. + *(int*)&(image->numCols) = 3; + num = 8; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 6; + } + num = 13; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 6; + } + num = 3; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 7; + } + num = 8; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 7; + } + num = -10; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for row)"); + out = psImageRow(NULL, image, num); + if (out != NULL) { + return 8; + } + num = -14; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message(for col)"); + out = psImageCol(NULL, image, num); + if (out != NULL) { + return 8; + } + + //Test valid cases. + image->col0 = 10; + image->row0 = 5; + *(int*)&(image->numRows) = 3; + *(int*)&(image->numCols) = 3; + image->data.F64[0][0] = 666.666; + image->data.F64[1][0] = 66.6; + image->data.F64[2][0] = 6.66; + image->data.F64[0][1] = 6.6; + image->data.F64[1][1] = 6.666; + image->data.F64[2][1] = 66.666; + image->data.F64[0][2] = 666.6; + image->data.F64[1][2] = 666.66; + image->data.F64[2][2] = 66.66; + num = 7; + out = psImageRow(out, image, num); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageRow failed to return correct psVector output.\n"); + return 10; + } else { + psFree(out); + out = NULL; + } + num = 11; + out = psImageCol(NULL, image, num); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageCol failed to return correct psVector output.\n"); + return 10; + } else { + psFree(out); + out = NULL; + } + + num = -3; + out = psImageRow(out, image, num); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageRow failed to return correct psVector output.\n"); + return 10; + } else { + psFree(out); + out = NULL; + } + num = -1; + out = psImageCol(NULL, image, num); + if (out == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psImageCol failed to return correct psVector output.\n"); + return 10; + } + psFree(out); + psFree(image); + return 0; +} + +psS32 testImageRowColF64(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_F64); + rowcol = psVectorAlloc(3, PS_TYPE_F64); + + image->data.F64[0][0] = 666.666; + image->data.F64[1][0] = 66.6; + image->data.F64[2][0] = 6.66; + image->data.F64[0][1] = 6.6; + image->data.F64[1][1] = 6.666; + image->data.F64[2][1] = 66.666; + image->data.F64[0][2] = 666.6; + image->data.F64[1][2] = 666.66; + image->data.F64[2][2] = 66.66; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.F64[0] = 1.1; + rowcol->data.F64[2] = 2.2; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + double test1, test2; + double TOLTST = .001; + test1 = fabs(rowcol->data.F64[0]-6.6); + test2 = fabs(rowcol->data.F64[2]-66.666); + if ( (test1>TOLTST) || (test2>TOLTST) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + rowcol = psImageRow(rowcol, image, 1); + test1 = fabs(rowcol->data.F64[0]-66.6); + test2 = fabs(rowcol->data.F64[2]-666.66); + if ( (test1>TOLTST) || (test2>TOLTST) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return correct values.\n"); + return 4; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColF32(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + float test1; + float test2; + float TOLTST = .01; + + image = psImageAlloc(3, 3, PS_TYPE_F32); + rowcol = psVectorAlloc(3, PS_TYPE_F32); + rowcol->n = rowcol->nalloc; + + image->data.F32[0][0] = 666.666; + image->data.F32[1][0] = 66.6; + image->data.F32[2][0] = 6.66; + image->data.F32[0][1] = 6.6; + image->data.F32[1][1] = 6.666; + image->data.F32[2][1] = 66.666; + image->data.F32[0][2] = 666.6; + image->data.F32[1][2] = 666.66; + image->data.F32[2][2] = 66.66; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.F32[0] = 1.1; + rowcol->data.F32[2] = 2.2; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + test1 = fabs(rowcol->data.F32[0]-6.6); + test2 = fabs(rowcol->data.F32[2]-66.666); + if ( (test1>TOLTST) || (test2>TOLTST) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColU64(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U64); + rowcol = psVectorAlloc(3, PS_TYPE_U64); + + image->data.U64[0][0] = 666666; + image->data.U64[1][0] = 666; + image->data.U64[2][0] = 666; + image->data.U64[0][1] = 66; + image->data.U64[1][1] = 6666; + image->data.U64[2][1] = 66666; + image->data.U64[0][2] = 6666; + image->data.U64[1][2] = 66666; + image->data.U64[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.U64[0] = 11; + rowcol->data.U64[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.U64[0] != 666 && rowcol->data.U64[2] != 66666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColU32(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U32); + rowcol = psVectorAlloc(3, PS_TYPE_U32); + + image->data.U32[0][0] = 666666; + image->data.U32[1][0] = 666; + image->data.U32[2][0] = 666; + image->data.U32[0][1] = 66; + image->data.U32[1][1] = 6666; + image->data.U32[2][1] = 66666; + image->data.U32[0][2] = 6666; + image->data.U32[1][2] = 66666; + image->data.U32[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.U32[0] = 11; + rowcol->data.U32[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.U32[0] != 666 && rowcol->data.U32[2] != 66666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColS32(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S32); + rowcol = psVectorAlloc(3, PS_TYPE_S32); + + image->data.S32[0][0] = 666666; + image->data.S32[1][0] = 666; + image->data.S32[2][0] = 666; + image->data.S32[0][1] = 66; + image->data.S32[1][1] = 6666; + image->data.S32[2][1] = 66666; + image->data.S32[0][2] = 6666; + image->data.S32[1][2] = 66666; + image->data.S32[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.S32[0] = 11; + rowcol->data.S32[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.S32[0] != 666 && rowcol->data.S32[2] != 66666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColS64(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S64); + rowcol = psVectorAlloc(3, PS_TYPE_S64); + + image->data.S64[0][0] = 666666; + image->data.S64[1][0] = 666; + image->data.S64[2][0] = 666; + image->data.S64[0][1] = 66; + image->data.S64[1][1] = 6666; + image->data.S64[2][1] = 66666; + image->data.S64[0][2] = 6666; + image->data.S64[1][2] = 66666; + image->data.S64[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.S64[0] = 11; + rowcol->data.S64[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.S64[0] != 666 && rowcol->data.S64[2] != 66666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColS16(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S16); + rowcol = psVectorAlloc(3, PS_TYPE_S16); + + image->data.S16[0][0] = 3333; + image->data.S16[1][0] = 666; + image->data.S16[2][0] = 666; + image->data.S16[0][1] = 66; + image->data.S16[1][1] = 6666; + image->data.S16[2][1] = 4444; + image->data.S16[0][2] = 6666; + image->data.S16[1][2] = 4444; + image->data.S16[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.S16[0] = 11; + rowcol->data.S16[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.S16[0] != 666 && rowcol->data.S16[2] != 4444) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColU16(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U16); + rowcol = psVectorAlloc(3, PS_TYPE_U16); + + image->data.S16[0][0] = 3333; + image->data.S16[1][0] = 666; + image->data.S16[2][0] = 666; + image->data.S16[0][1] = 66; + image->data.S16[1][1] = 6666; + image->data.S16[2][1] = 4444; + image->data.S16[0][2] = 6666; + image->data.S16[1][2] = 4444; + image->data.S16[2][2] = 6666; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.U16[0] = 11; + rowcol->data.U16[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.U16[0] != 666 && rowcol->data.U16[2] != 4444) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} + +psS32 testImageRowColU8(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_U8); + rowcol = psVectorAlloc(3, PS_TYPE_U8); + + image->data.U8[0][0] = 244; + image->data.U8[1][0] = 123; + image->data.U8[2][0] = 123; + image->data.U8[0][1] = 66; + image->data.U8[1][1] = 199; + image->data.U8[2][1] = 249; + image->data.U8[0][2] = 199; + image->data.U8[1][2] = 249; + image->data.U8[2][2] = 199; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.U8[0] = 11; + rowcol->data.U8[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.U8[0] != 123 && rowcol->data.U8[2] != 249) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} +psS32 testImageRowColS8(void) +{ + psVector *rowcol = NULL; + psVector *empty = NULL; + psImage *image = NULL; + psImage *emptyImage = NULL; + + image = psImageAlloc(3, 3, PS_TYPE_S8); + rowcol = psVectorAlloc(3, PS_TYPE_S8); + + image->data.S8[0][0] = 44; + image->data.S8[1][0] = 23; + image->data.S8[2][0] = 23; + image->data.S8[0][1] = 66; + image->data.S8[1][1] = 99; + image->data.S8[2][1] = 49; + image->data.S8[0][2] = 99; + image->data.S8[1][2] = 49; + image->data.S8[2][2] = 99; + + //Test for error with NULL image + empty = psImageCol(empty, emptyImage, 0); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return NULL for NULL image input.\n"); + return 1; + } + //Test for error with Out of Range Row + empty = psImageRow(empty, image, 5); + if (empty != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageRow failed to return NULL for out of range row input.\n"); + return 2; + } + rowcol->data.S8[0] = 11; + rowcol->data.S8[2] = 22; + //Test recycling of non-NULL vector & correct output + rowcol = psImageCol(rowcol, image, 1); + if (rowcol->data.S8[0] != 23 && rowcol->data.S8[2] != 49) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCol failed to return correct values.\n"); + return 3; + } + + psFree(rowcol); + psFree(image); + return 0; +} Index: /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImagePixelManip.c (revision 12167) @@ -0,0 +1,797 @@ +/** @file tst_psImageManip.c + * + * @brief Contains the tests for psImageManip.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-10-06 02:41:07 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include +#include +#include // for memset +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageClip(void); +static psS32 testImageClipNAN(void); +static psS32 testImageClipComplexRegion(void); +static psS32 testImageOverlay(void); + +testDescription tests[] = { + {testImageClip,571,"psImageClip",0,false}, + {testImageClipNAN,572,"psImageClipNAN",0,false}, + {testImageClipComplexRegion,673,"psImageClipComplexRegion",0,false}, + {testImageOverlay,573,"psImageOverlay",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + + +psS32 testImageClip(void) +{ + psImage* img = NULL; + psU32 c = 128; + psU32 r = 256; + psF64 min; + psF64 max; + psS32 numClipped = 0; + psS32 retVal; + + psLogMsg(__func__,PS_LOG_INFO, + "psImageClip shall limit the minimum and maximum data value within a psImage structure"); + + /* + + psImageClip shall limit the minimum and maximum data value within a + psImage structure to a specified min and max value. + + Verify the returned integer is equal to the number of pixels clipped, + if the input psImage structure contains known values and input parameters + min and max have know values. + + Verify the psImage structure specified by the input parameter input is + modified to contain the expected values, if the input psImage structure + contains known values, min and max are specified and vmin and vmax + parameters are known. + + Verify the retuned integer is zero, psImage structure input is unmodified + and program executions doesn't stop, if input parameter psImage structure + pointer is null. + + Verify the retuned integer is zero, psImage structure input is unmodified + and program executions doesn't stop, if input parameter min is larger than max. + */ + + // create image + #define testImageClipByType(datatype) \ + img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (psU32 row=0;rowdata.datatype[row]; \ + for (psU32 col=0;coldata.datatype[row]; \ + for (psU32 col=0;col max) { \ + numClipped++; \ + value = PS_MAX_##datatype; \ + } \ + if (fabsf(imgRow[col]-value) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Pixel value is not as expected (%g vs %g) at %u,%u", \ + (psF64)imgRow[col],(psF64)value,col,row); \ + return 1; \ + } \ + } \ + } \ + if (retVal != numClipped) { \ + psError(PS_ERR_UNKNOWN, true,"Expected %d clips, but got %d", \ + numClipped,retVal); \ + return 2; \ + } \ + psFree(img); + + #define testImageClipByComplexType(datatype) \ + img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (psU32 row=0;rowdata.datatype[row]; \ + for (psU32 col=0;coldata.datatype[row]; \ + for (psU32 col=0;col max) { \ + numClipped++; \ + value = -2.0f; \ + } \ + if (fabsf(creal(imgRow[col])-creal(value)) > FLT_EPSILON || \ + fabsf(cimag(imgRow[col])-cimag(value)) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Pixel value is not as expected (%.2f+%.2fi vs %.2f+%.2fi) at %u,%u", \ + creal(imgRow[col]),cimag(imgRow[col]),creal(value),cimag(value),col,row); \ + return 1; \ + } \ + } \ + } \ + if (retVal != numClipped) { \ + psError(PS_ERR_UNKNOWN, true,"Expected %d clips, but got %d", \ + numClipped,retVal); \ + return 2; \ + } \ + psFree(img); + + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of F64 imagery"); + testImageClipByType(F64); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of F32 imagery"); + testImageClipByType(F32); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of S32 imagery"); + testImageClipByType(S32); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of S16 imagery"); + testImageClipByType(S16); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of S8 imagery"); + testImageClipByType(S8); + // psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of U32 imagery"); + // testImageClipByType(U32); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of U16 imagery"); + testImageClipByType(U16); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of U8 imagery"); + testImageClipByType(U8); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of C32 imagery"); + testImageClipByComplexType(C32); + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping of C64 imagery"); + testImageClipByComplexType(C64); + + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter psImage structure + // pointer is null. + retVal = psImageClip(NULL,min,-1.0f,max,-2.0f); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for clips of a NULL image."); + return 3; + } + + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter min is larger than max. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error (maxdata.datatype[row]; \ + for (unsigned col=0;coldata.datatype[row]; \ + for (unsigned col=0;col FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Pixel value is not as expected (%f vs %f) at %d,%d", \ + imgRow[col],value,col,row); \ + return 1; \ + } \ + } \ + } \ + if (retVal != numClipped) { \ + psError(PS_ERR_UNKNOWN, true,"Expected %d clips, but got %d", \ + numClipped,retVal); \ + return 2; \ + } \ + psFree(img); + + testImageClipNaNByType(F32); + testImageClipNaNByType(F64); + testImageClipNaNByType(C32); + testImageClipNaNByType(C64); + + // Verify the retuned integer is zero, psImage structure input is unmodified + // and program executions doesn't stop, if input parameter psImage structure + // pointer is null. + retVal = psImageClipNaN(NULL,-1.0f); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for clips of a NULL image."); + return 3; + } + + // Verify program execution doesn't stop if the input image type is something + // other than F32, F64, C32, C64. + img = psImageAlloc(c,r,PS_TYPE_S32); + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error (invalid type)"); + retVal = psImageClipNaN(img,2.0f); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for clip of invalid image type."); + return 4; + } + psFree(img); + + return 0; +} + +psS32 testImageClipComplexRegion(void) +{ + psImage* img = NULL; + psU32 c = 1024; + psU32 r = 2048; + psS32 numClipped = 0; + psS32 retVal; + + psLogMsg(__func__,PS_LOG_INFO, + "psImageClipNaN shall modified pixel values of NaN with a specified value"); + + /* + 1. Create a complex image with a wide range of complex values + + 2. call psImageClipComplexRegion with min and max where there is at least + 2 pixels in the image above) that is: + a) real(p) < real(min) && complex(p) < complex(min), + b) real(p) < real(min) && complex(min) < complex(p) < complex(max) + c) real(min) < real(p) < real(max) && complex(p) < complex(min) + d) real(min) < real(p) < real(max) && complex(min) < complex(p) < complex(max) + e) real(p) > real(max) && complex(min) < complex(p) < complex(max) + f) real(pmin) < real(p) < real(max) && complex(p) > complex(max) + g) real(p) > real(max) && complex(p) > complex(max) + h) real(p) < real(min) && complex(p) > complex(max) + i) real(p) > real(max) && complex(p) < complex(min) + + 3. verify that All pixels in case (a), (b), and (c) have the value vmin + + 4. verify that all pixels in case (d) are unchanged from input + + 5. verify that all pixels in case (e), (f), (g), (h), and (i) have the + value vmax + + */ + + #define testImageClipComplexByType(datatype,MIN,MAX) /* datatype must be complex */ \ + /* create image */ \ + img = psImageAlloc(c,r,PS_TYPE_##datatype); \ + for (unsigned row=0;rowdata.datatype[row]; \ + for (unsigned col=0;coldata.datatype[row]; \ + for (unsigned col=0;col creal(MAX)) || (col > cimag(MAX)) ) { \ + numClipped++; \ + value = -2.0-2.0*I; \ + } else if ((row < creal(MIN)) || (col < cimag(MIN)) ) { \ + numClipped++; \ + value = -1.0-1.0*I; \ + } \ + if (cabs(imgRow[col]-value) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Pixel value is not as expected (%g%+gi vs %g%+gi) at %d,%d", \ + creal(imgRow[col]),cimag(imgRow[col]),creal(value),cimag(value),col,row); \ + return 1; \ + } \ + } \ + } \ + if (retVal != numClipped) { \ + psError(PS_ERR_UNKNOWN, true,"Expected %d clips, but got %d", \ + numClipped,retVal); \ + return 2; \ + } \ + psFree(img); + + complex double min = ((double)r)/5.0+I*((double)c)/4.0; + complex double max = ((double)r)/3.0+I*((double)c)/2.0; + + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping at %g%+gi to %g%+gi for psC32", + creal(min),cimag(min),creal(max),cimag(max)); + + testImageClipComplexByType(C32,min,max); + + psLogMsg(__func__,PS_LOG_INFO,"Testing clipping at %g%+gi to %g%+gi for psC64", + creal(min),cimag(min),creal(max),cimag(max)); + testImageClipComplexByType(C64,min,max); + + // 6. Call psImageClipComplexRegion with NULL input parameter; should error + // but not stop execution. + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(NULL,0,0,0,0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for clips of a NULL image."); + return 3; + } + + + img = psImageAlloc(c,r,PS_TYPE_C32); + for (unsigned row=0;rowdata.C32[row]; + for (unsigned col=0;col max; should error and return 0, + // but not stop execution + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img,10.0+I*1.0,-1.0,5.0+5.0*I,-2.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for creal(min)>creal(max)."); + return 3; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img,1.0+I*10.0,-1.0,5.0+5.0*I,-2.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for cimag(min)>cimag(max)."); + return 3; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img,10.0+I*10.0,-1.0,5.0+5.0*I,-2.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for min>max."); + return 3; + } + + // 8. Call psImageClipComplexRegion with the follow vmin/vmax values; each + // should error and return 0, but not stop execution + // a) vmin < datatype region's minimum + // b) vmax < datatype region's minimum + // c) vmin > datatype region's maximum + // d) vmax > datatype region's maximum + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + -2.0*(double)FLT_MAX, + 5.0+5.0*I, + 0.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmin not in datatype range."); + return 80; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 2.0*(double)FLT_MAX, + 5.0+5.0*I, + 0.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmin not in datatype range."); + return 81; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + FLT_EPSILON-2.0*(double)FLT_MAX*I, + 5.0+5.0*I, + 0.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmin not in datatype range."); + return 82; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + FLT_EPSILON+2.0*(double)FLT_MAX*I, + 5.0+5.0*I, + 0.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmin not in datatype range."); + return 83; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + -2.0*(double)FLT_MAX); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmax not in datatype range."); + return 84; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + 2.0*(double)FLT_MAX); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmax not in datatype range."); + return 85; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + FLT_EPSILON-2.0*(double)FLT_MAX*I); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmax not in datatype range."); + return 87; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error:"); + retVal = psImageClipComplexRegion(img, + 1.0+I*1.0, + 0.0, + 5.0+5.0*I, + FLT_EPSILON+2.0*(double)FLT_MAX*I); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for vmax not in datatype range."); + return 88; + } + + + // now check if vmin > vmax is OK + for (unsigned row=0;rowdata.C32[row]; + for (unsigned col=0;col vmax."); + return 83; + } + + + psFree(img); + img = NULL; + + // 9. Call psImageClipComplexRegion with the max value out of datatype's + // range; should clip as expected (see step 1-5). Repeat with min value + // out of datatype's range. + + testImageClipComplexByType(C32,-(double)FLT_MAX*2.0-I*(double)FLT_MAX*2.0,10.0+I*10.0); + testImageClipComplexByType(C32,10.0+I*10.0,(double)FLT_MAX*2.0+I*(double)FLT_MAX*2.0); + + // Verify program execution doesn't stop if the input image type is something + // other than C32, C64. + img = psImageAlloc(c,r,PS_TYPE_S32); + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error (invalid type)"); + retVal = psImageClipComplexRegion(img,2.0,10.0,5.0,0.0); + if (retVal != 0) { + psError(PS_ERR_UNKNOWN, true,"Expected zero return for clip of invalid image type."); + return 84; + } + psFree(img); + + return 0; +} + +psS32 testImageOverlay(void) +{ + + psImage* img = NULL; + psImage* img2 = NULL; + psImage* img3 = NULL; + psImage* img4 = NULL; + psU32 c = 128; + psU32 r = 256; + psS32 retVal; + + /* + psImageSectionOverlay shall modified pixel values in a psImage structure to + be equal to the value of the originaldata and an overlay image with a + specified operation. Valid operations include =, +, -, *, /. + + Verify the returned integer is zero + and the input parameter psImage structure is modified at the specified + location and range with the given overlay image and the specified + function. Cases should include all the valid operations. Comparison of + expected values should include a delta to allow for testing on + different platforms. + + */ + + #define testOverlayTypeOP(DATATYPE,OP,OPSTRING) \ + img = psImageAlloc(c,r,PS_TYPE_##DATATYPE); \ + for (unsigned row=0;rowdata.DATATYPE[row]; \ + for (unsigned col=0;coldata.DATATYPE[row]; \ + for (unsigned col=0;coldata.DATATYPE[row]; \ + ps##DATATYPE* img2Row = img2->data.DATATYPE[row]; \ + for (unsigned col=0;col= r/2+r/4 || col < c/4 || col >= c/2+c/4)) { \ + val OP 2.0; \ + } \ + if (fabsf(imgRow[col] - val) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Value incorrect at %d,%d (%.2f vs %.2f for %s)", \ + col,row,imgRow[col],val,OPSTRING); \ + return 2; \ + } \ + if (row < r/2 && col < c/2 && fabsf(img2Row[col] - 2.0) > FLT_EPSILON) { \ + psError(PS_ERR_UNKNOWN, true,"Overlay modified at %d,%d (%.2f for %s)", \ + col,row,img2Row[col],OPSTRING); \ + return 2; \ + } \ + } \ + } \ + psFree(img); \ + psFree(img2); + + #define testOverlayType(DATATYPE) \ + testOverlayTypeOP(DATATYPE,+=,"+"); \ + testOverlayTypeOP(DATATYPE,-=,"-"); \ + testOverlayTypeOP(DATATYPE,*=,"*");\ + testOverlayTypeOP(DATATYPE,/=,"/");\ + testOverlayTypeOP(DATATYPE,=,"="); + + testOverlayType(C64); + testOverlayType(C32); + testOverlayType(F64); + testOverlayType(F32); + testOverlayType(S16); + testOverlayType(S8); + testOverlayType(U16); + testOverlayType(U8); + + /* + Verify the returned integer is equal to non-zero and the input psImage structure + is unmodified, if the overlay specified is not within the data range of the + input psImage structure. + */ + + img = psImageAlloc(c,r,PS_TYPE_F32); + for (unsigned row=0;rowdata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.S64[row]; + for (unsigned col=0;coldata.S64[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;col +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageSmooth(); + +testDescription tests[] = { + {testImageSmooth, 0, "psImageSmooth", 0, false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr, "psImage", tests, argc, argv); +} + +#define NUM_ROWS 20 +#define NUM_COLS 20 +#define SIGMA 1.0 +#define NSIGMA 5.0 +#define TS00_IM_NULL 0x00000001 +#define TS00_IM_F32 0x00000002 +#define TS00_IM_F64 0x00000004 +#define TS00_IM_S32 0x00000008 +#define VERBOSE 0 + +static psBool testImageSmoothGeneric( + psU32 flags, + psS32 numCols, + psS32 numRows, + psF64 sigma, + psF64 Nsigma, + psBool expectedRC) +{ + psBool testStatus = true; + psImage *img = NULL; + + printPositiveTestHeader(stdout, "psImageConvolve.c", "Image Smoothing Routine"); + + if (expectedRC == false) { + printf("This test should generate FALSE.\n"); + } else { + printf("This test should generate TRUE.\n"); + } + + if (flags & TS00_IM_NULL) { + printf(" using a NULL image\n"); + } + + if (flags & TS00_IM_F32) { + printf(" using a psF32 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_F32); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.F32[i][j] = 1.0; + } else { + img->data.F32[i][j] = 0.0; + } + } + } + } + if (VERBOSE) { + p_psImagePrint(1, img, "The Smoothed Image"); + } + + if (flags & TS00_IM_F64) { + printf(" using a psF64 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_F64); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.F64[i][j] = 1.0; + } else { + img->data.F64[i][j] = 0.0; + } + } + } + } + + if (flags & TS00_IM_S32) { + printf(" using a psS32 image\n"); + img = psImageAlloc(numCols, numRows, PS_TYPE_S32); + // Set a checkboard pattern + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + if ((i%2) != (j%2)) { + img->data.S32[i][j] = 1; + } else { + img->data.S32[i][j] = 0; + } + } + } + } + printf(" %d columns\n", numCols); + printf(" %d rows\n", numRows); + printf(" sigma is %.2f\n", sigma); + printf(" Nsigma is %.2f\n", Nsigma); + + psBool rc = psImageSmooth(img, sigma, Nsigma); + if (rc == false) { + if (expectedRC == true) { + printf("TEST ERROR: psImageSmooth returned FALSE\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: psImageSmooth returned TRUE\n"); + testStatus = false; + } + if (VERBOSE) { + p_psImagePrint(1, img, "The Smoothed Image"); + } + + if (flags & TS00_IM_F32) { + for (psS32 i = 1 ; i < numRows-1 ; i++) { + for (psS32 j = 1 ; j < numCols-1 ; j++) { + if ((fabs(img->data.F32[i][j] - 0.5) > 0.1)) { + printf("TEST ERROR: img[%d][%d] was %f, expected 0.5\n", + i, j, img->data.F32[i][j]); + testStatus = false; + } + } + } + } + + if (flags & TS00_IM_F64) { + for (psS32 i = 1 ; i < numRows-1 ; i++) { + for (psS32 j = 1 ; j < numCols-1 ; j++) { + if ((fabs(img->data.F64[i][j] - 0.5) > 0.1)) { + printf("TEST ERROR: img[%d][%d] was %f, expected 0.5\n", + i, j, img->data.F64[i][j]); + testStatus = false; + } + } + } + } + } + psFree(img); + + return(testStatus); +} + +static psS32 testImageSmooth() +{ + int bad = 0x00; // What's bad? + + bad |= (testImageSmoothGeneric(TS00_IM_F32, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, true) ? 0x00 : 0x01); + bad |= (testImageSmoothGeneric(TS00_IM_F32, 1, NUM_ROWS, SIGMA, NSIGMA, true) ? 0x00 : 0x02); + bad |= (testImageSmoothGeneric(TS00_IM_F32, NUM_COLS, 1, SIGMA, NSIGMA, true) ? 0x00 : 0x04); + bad |= (testImageSmoothGeneric(TS00_IM_F32, 1, 1, SIGMA, NSIGMA, true) ? 0x00 : 0x08); + bad |= (testImageSmoothGeneric(TS00_IM_F64, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, true) ? 0x00 : 0x10); + bad |= (testImageSmoothGeneric(TS00_IM_S32, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, false) ? 0x00 : 0x20); + bad |= (testImageSmoothGeneric(TS00_IM_NULL, NUM_COLS, NUM_ROWS, SIGMA, NSIGMA, false) ? 0x00 : 0x40); + + return bad; +} Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageStats.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageStats.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageStats.c (revision 12167) @@ -0,0 +1,819 @@ +/* +* C Implementation: %{MODULE} +* +* Description: +* +* +* Author: %{AUTHOR} <%{EMAIL}>, (C) %{YEAR} +* +* Copyright: See COPYING file that comes with this distribution +* +*/ + +#include +#include +#include + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testPsImageHistogram(void); +static psS32 testPsImageStats(void); +static psS32 testPsImageFitPolynomial(void); +static psS32 testPsImagePixelInterpolate(void); +static psS32 testPsImageEvalPolynom(void); +static psS32 testImageCountPixel(void); + +static bool FitChebyF32(int numCols, int numRows); +static bool FitChebyF64(int numCols, int numRows); + +testDescription tests[] = { + {testPsImageHistogram, 0, "psImageHistogram", 0, false}, + {testPsImageStats, 1, "psImageStats", 0, false}, + {testPsImageFitPolynomial, 2, "psImageFitPolynomial", 0, false}, + {testPsImagePixelInterpolate, 3, "psImagePixelInterpolate", 0, false}, + {testPsImageEvalPolynom, 4, "psImageEvalPolynom()", 0, false}, + {testImageCountPixel, 5, "psImageCountPixel", 0, false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + + + +static psS32 testPsImageHistogram(void) +{ + const int NUM_BINS = 20; + const int N = 32; + const int M = 64; + + psHistogram * myHist = NULL; + psHistogram *myHist2 = NULL; + psImage *tmpImage = NULL; + psImage *tmpImage2 = NULL; + psImage *tmpMask = NULL; + psImage *tmpMask2 = NULL; + psS32 testStatus = true; + psS32 nb = 0; + psS32 i = 0; + psS32 j = 0; + psS32 IMAGE_X_SIZE = 0; + psS32 IMAGE_Y_SIZE = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + for ( nb = 0;nb < 7;nb++ ) { + if ( nb == 0 ) { + IMAGE_X_SIZE = 1; + IMAGE_Y_SIZE = 1; + } + if ( nb == 1 ) { + IMAGE_X_SIZE = 1; + IMAGE_Y_SIZE = N; + } + if ( nb == 2 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = 1; + } + if ( nb == 3 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = N; + } + if ( nb == 4 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = M; + } + if ( nb == 5 ) { + IMAGE_X_SIZE = M; + IMAGE_Y_SIZE = N; + } + if ( nb == 6 ) { + IMAGE_X_SIZE = M; + IMAGE_Y_SIZE = N; + } + fprintf(stderr, "*******************************\n" ); + if (nb != 6) { + fprintf(stderr, "* IMAGE SIZE is (%d by %d)\n", IMAGE_X_SIZE, IMAGE_Y_SIZE ); + } else { + fprintf(stderr, "* IMAGE SUBSET SIZE is (%d by %d)\n", IMAGE_X_SIZE, IMAGE_Y_SIZE ); + } + fprintf(stderr, "*******************************\n" ); + /*********************************************************************/ + /* Allocate and initialize data structures */ + /*********************************************************************/ + if (nb != 6) { + tmpImage = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_F32 ); + tmpMask = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_U8 ); + tmpImage2 = NULL; + tmpMask2 = NULL; + } else { + tmpImage2 = psImageAlloc( IMAGE_X_SIZE*2, IMAGE_Y_SIZE*2, PS_TYPE_F32 ); + tmpMask2 = psImageAlloc( IMAGE_X_SIZE*2, IMAGE_Y_SIZE*2, PS_TYPE_U8 ); + tmpImage = psImageSubset(tmpImage2, psRegionSet(IMAGE_X_SIZE/4, IMAGE_X_SIZE/4+IMAGE_X_SIZE, + IMAGE_Y_SIZE/4, IMAGE_Y_SIZE/4+IMAGE_Y_SIZE)); + tmpMask= psImageSubset(tmpMask2, psRegionSet(IMAGE_X_SIZE/4, IMAGE_X_SIZE/4+IMAGE_X_SIZE, + IMAGE_Y_SIZE/4, IMAGE_Y_SIZE/4+IMAGE_Y_SIZE)); + } + + + for ( i = 0;i < tmpImage->numRows;i++ ) { + for ( j = 0;j < tmpImage->numCols;j++ ) { + tmpImage->data.F32[ i ][ j ] = ( float ) ( i + j + 0.1 ); + } + } + + + for ( i = 0;i < tmpMask->numRows;i++ ) { + for ( j = 0;j < tmpMask->numCols;j++ ) { + if ( ( i > ( tmpMask->numRows / 2 ) ) && + ( j > ( tmpMask->numCols / 2 ) ) ) { + tmpMask->data.U8[ i ][ j ] = 1; + } else { + tmpMask->data.U8[ i ][ j ] = 0; + } + } + } + + /*************************************************************************/ + /* Calculate Histogram with no mask */ + /*************************************************************************/ + + myHist = psHistogramAlloc( 0.0, ( float ) ( IMAGE_X_SIZE + IMAGE_Y_SIZE ), + NUM_BINS ); + myHist = psImageHistogram( myHist, tmpImage, NULL, 0 ); + for ( i = 0;i < NUM_BINS;i++ ) { + fprintf(stderr, "Bin number %d bounds: (%.1f - %.1f) data (%.2f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ] ); + } + psFree( myHist ); + + /*************************************************************************/ + /* Calculate Histogram with mask */ + /*************************************************************************/ + + myHist = psHistogramAlloc( 0.0, ( float ) ( IMAGE_X_SIZE + IMAGE_Y_SIZE ), + NUM_BINS ); + myHist = psImageHistogram( myHist, tmpImage, tmpMask, 1 ); + for ( i = 0;i < NUM_BINS;i++ ) { + fprintf( stderr, "Bin number %d bounds: (%.2f - %.2f) data (%.2f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ] ); + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree( myHist ); + psFree( tmpImage ); + psFree( tmpImage2 ); + psFree( tmpMask ); + psFree( tmpMask2 ); + } + tmpImage = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_F32 ); + myHist = psHistogramAlloc( 0.0, ( float ) ( IMAGE_X_SIZE + IMAGE_Y_SIZE ), + NUM_BINS ); + myHist2 = psImageHistogram( NULL, tmpImage, NULL, 0 ); + if ( myHist2 != NULL ) { + fprintf(stderr, "ERROR: myHist2 not equal to NULL\n" ); + } + + myHist2 = psImageHistogram( myHist, NULL, NULL, 0 ); + myHist2 = psImageHistogram( NULL, tmpImage, NULL, 0 ); + if ( myHist2 != NULL ) { + fprintf(stderr, "ERROR: myHist2 not equal to NULL\n" ); + } + + + tmpMask = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_S8 ); + for ( i = 0;i < tmpMask->numRows;i++ ) { + for ( j = 0;j < tmpMask->numCols;j++ ) { + if ( ( i > ( tmpMask->numRows / 2 ) ) && + ( j > ( tmpMask->numCols / 2 ) ) ) { + tmpMask->data.S8[ i ][ j ] = 1; + } else { + tmpMask->data.S8[ i ][ j ] = 0; + } + } + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error for invalid mask type."); + myHist2 = psImageHistogram(myHist,tmpImage,tmpMask,1); + if (myHist2 != NULL) { + fprintf(stderr,"ERROR: myHist2 not equal to NULL\n"); + } + + psFree( tmpMask ); + psFree(myHist); + psFree(myHist2); + psFree( tmpImage ); + + return ( !testStatus ); +} + +static psS32 testPsImageFitPolynomial() +{ + const int IMAGE_SIZE = 16; + const int CHEBY_X_DIM = 8; + const int CHEBY_Y_DIM = 8; + const int THRESHOLD = 10; + + psStats * myStats = NULL; + psImage *tmpImage = NULL; + psImage *outImage = NULL; + psImage *nullImage = NULL; + psPolynomial2D *my2DPoly = NULL; + psPolynomial2D *null2DPoly = NULL; + psS32 testStatus = true; + psS32 i = 0; + psS32 j = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + tmpImage = psImageAlloc( IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32 ); + outImage = psImageAlloc( IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32 ); + for ( i = 0;i < IMAGE_SIZE;i++ ) { + for ( j = 0;j < IMAGE_SIZE;j++ ) { + tmpImage->data.F32[ i ][ j ] = 4.0; + tmpImage->data.F32[ i ][ j ] = ( float ) ( i + j ); + tmpImage->data.F32[ i ][ j ] = ( float ) ( i + j ) + ( 4.0 * ( float ) i ); + outImage->data.F32[ i ][ j ] = 0.0; + } + } + my2DPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, CHEBY_X_DIM-1, CHEBY_Y_DIM-1); + /*************************************************************************/ + /* Calculate Chebyshev Polynomials, no mask */ + /*************************************************************************/ + my2DPoly = psImageFitPolynomial( my2DPoly, tmpImage ); + if (my2DPoly == NULL) { + printf("TEST ERROR: psImageFitPolynomial() returned NULL.\n"); + testStatus = false; + } + for ( i = 0;i < CHEBY_X_DIM;i++ ) { + for ( j = 0;j < CHEBY_Y_DIM;j++ ) { + fprintf(stderr, "Cheby Polynomial (%d, %d) coefficient is %.2f\n", i, j, + 0.0001f+my2DPoly->coeff[ i ][ j ] ); + } + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error message for NULL coeffs argument."); + null2DPoly = psImageFitPolynomial( NULL, tmpImage ); + if ( null2DPoly != NULL ) { + fprintf(stderr,"ERROR: psImageFitPolynomial did not return NULL with invalid coeffs argument."); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be a error message for NULL input argument."); + null2DPoly = psImageFitPolynomial( null2DPoly, NULL ); + if ( null2DPoly != NULL ) { + fprintf(stderr,"ERROR: psImageFitPolynomial did not return NULL with null input image."); + } + + /*************************************************************************/ + /* Evaluate Chebyshev Polynomials, no mask */ + /*************************************************************************/ + outImage = psImageEvalPolynomial( outImage, my2DPoly ); + for ( i = 0;i < IMAGE_SIZE;i++ ) { + for ( j = 0;j < IMAGE_SIZE;j++ ) { + + // fprintf(stderr,"pixel[%d][%d] is (%.2f, %.2f)\n", i, j, + // tmpImage->data.F32[i][j], + // outImage->data.F32[i][j]); + if ( fabs( outImage->data.F32[ i ][ j ] - tmpImage->data.F32[ i ][ j ] ) > THRESHOLD ) { + fprintf(stderr, "Pixel (%d, %d) is %.2f, should be %.2f\n", i, j, + outImage->data.F32[ i ][ j ], + tmpImage->data.F32[ i ][ j ] ); + } + + } + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error message for NULL coeffs argument."); + nullImage = psImageEvalPolynomial( outImage, NULL ); + if ( nullImage != NULL ) { + fprintf(stderr,"ERROR: psImageEvalPolynomial did not return NULL with invalid coeffs argument."); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be a error message for NULL input argument."); + nullImage = psImageEvalPolynomial( NULL, my2DPoly ); + if ( nullImage != NULL ) { + fprintf(stderr,"ERROR: psImageEvalPolynomial did not return NULL with null input image."); + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree( myStats ); + psFree( tmpImage ); + psFree( outImage ); + psFree( my2DPoly ); + + return ( !testStatus ); +} + +static psS32 testPsImagePixelInterpolate() +{ + const int IMAGE_SIZE = 10; + + psImage *tmpImage = NULL; + psS32 testStatus = true; + psS32 i = 0; + psS32 j = 0; + float pixel = 0.0; + float x = 0.0; + float y = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + tmpImage = psImageAlloc(IMAGE_SIZE, IMAGE_SIZE, PS_TYPE_F32); + for (i=0;idata.F32[i][j] = 4.0; + tmpImage->data.F32[i][j] = (float) (i + j) + (4.0 * (float) i); + tmpImage->data.F32[i][j] = (float) (i + j); + fprintf(stderr,"%.1f ", tmpImage->data.F32[i][j]); + } + fprintf(stderr,"\n"); + } + for (i=0;idata.F32[i][j] = I_POLY(((float) i), ((float) j)); + } + } + + psPolynomial2D *chebys = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + + chebys = psImageFitPolynomial(chebys, tmpImage); + + outImage = psImageEvalPolynomial(outImage, chebys); + + chi2 = 0.0; + for (i=0;idata.F32[i][j]; + float actual = outImage->data.F32[i][j]; + chi2+= (actual-expect) * (actual-expect); + if (fabs((actual - expect) / expect) > ERROR_TOL) { + fprintf(stderr,"pixel [%d][%d] is %.2f should be %.2f\n", i, j, actual, expect); + } + } + } + chi2/= ((float) (numCols * numRows)); + fprintf(stderr,"The chi-squared per pixel is %.2f\n", chi2); + + psFree(tmpImage); + psFree(outImage); + psFree(chebys); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + + return(testStatus); +} + +static bool FitChebyF64(int numCols, int numRows) +{ + const double A = 1.0; + const double B = 2.0; + const double C = 3.0; + const double D = 4.0; + const double E = 5.0; + const double F = 6.0; + const double ERROR_TOL = 0.1; + + psImage *tmpImage = NULL; + psImage *outImage = NULL; + bool testStatus = true; + psS32 i = 0; + psS32 j = 0; + double chi2 = 0.0; + + + fprintf(stderr,"psImageFitPolynomial(), psImageEvalPolynom(): (%d by %d)\n", numRows, numCols); + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + + tmpImage = psImageAlloc(numCols, numRows, PS_TYPE_F64); + outImage = psImageAlloc(numCols, numRows, PS_TYPE_F64); + for (i=0;idata.F64[i][j] = I_POLY(((double) i), ((double) j)); + } + } + + psPolynomial2D *chebys = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 5, 5); + + chebys = psImageFitPolynomial(chebys, tmpImage); + + outImage = psImageEvalPolynomial(outImage, chebys); + + chi2 = 0.0; + for (i=0;idata.F64[i][j]; + double actual = outImage->data.F64[i][j]; + chi2+= (actual-expect) * (actual-expect); + if (fabs((actual - expect) / expect) > ERROR_TOL) { + fprintf(stderr,"pixel [%d][%d] is %.2f should be %.2f\n", i, j, actual, expect); + } + } + } + chi2/= ((double) (numCols * numRows)); + fprintf(stderr,"The chi-squared per pixel is %.2f\n", chi2); + + psFree(tmpImage); + psFree(outImage); + psFree(chebys); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + + return(testStatus); +} + +static psS32 testPsImageEvalPolynom() +{ + if (!FitChebyF32(1, 1)) { + return 1; + } + if (!FitChebyF32(1, 5)) { + return 2; + } + if (!FitChebyF32(5, 1)) { + return 3; + } + if (!FitChebyF32(5, 5)) { + return 4; + } + if (!FitChebyF64(1, 1)) { + return 5; + } + if (!FitChebyF64(1, 5)) { + return 6; + } + if (!FitChebyF64(5, 1)) { + return 7; + } + if (!FitChebyF64(5, 5)) { + return 8; + } + return 0; +} + +psS32 testImageCountPixel(void) +{ + long numPix = 0; + long numPix2 = 0; + psImage *in = NULL; + psRegion reg; + reg.x0 = 0; + reg.x1 = 1; + reg.y0 = 0; + reg.y1 = 4; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + numPix = psImageCountPixelMask(in, reg, 1); + if (numPix != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask failed to return -1 for NULL Vector input.\n"); + return 1; + } + + numPix = 0; + in = psImageAlloc(5, 5, PS_TYPE_S32); + + psImage *in2 = NULL; + in2 = psImageAlloc(1, 5, PS_TYPE_U8); + + in->data.S32[0][0] = 0; + in->data.S32[1][0] = 1; + in->data.S32[2][0] = 0; + in->data.S32[3][0] = 1; + in->data.S32[4][0] = 0; + in2->data.U8[0][0] = 0; + in2->data.U8[1][0] = 1; + in2->data.U8[2][0] = 0; + in2->data.U8[3][0] = 1; + in2->data.U8[4][0] = 0; + + // numPix = psImageCountPixelMask(in, reg, 1); + numPix2 = psImageCountPixelMask(in2, reg, 1); + numPix = -1; + //numPix should be -1 from using S32's + /* if (numPix != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask failed to return -1 for wrong type of Image input.\n"); + return 2; + } + */ + if (numPix2 == -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned -1 for Correct Image input\n"); + return 3; + } + if (numPix2 != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned incorrect pixel count %ld (!=2)\n", numPix2); + return 4; + } + //Test for smaller region than image returns only 1 pixel counted + reg.y1 = 2.1; + numPix2 = psImageCountPixelMask(in2, reg, 1); + if (numPix2 != 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned incorrect pixel count %ld\n", numPix2); + return 5; + } + //Test for -1 upper bnds in region = 5, 1 limits = 2 pixels returned + reg.x1 = 1; + reg.y1 = -1; + numPix2 = psImageCountPixelMask(in2, reg, 1); + if (numPix2 != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned incorrect pixel count %ld\n", numPix2); + return 100; + } + + //Test for invalid region (1 pixel, lower = upper) + reg.x0 = 1; + reg.y0 = 1; + reg.x1 = 1; + reg.y1 = 1; + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + numPix2 = psImageCountPixelMask(in2, reg, 1); + if (numPix2 != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask failed to return correct value (0) for 1 pixel region.\n"); + return 9; + } + + //Test for whole image (region = 0,0 0,0 ) + reg.x0 = 0; + reg.x1 = 0; + reg.y0 = 0; + reg.y1 = 0; + numPix2 = psImageCountPixelMask(in2, reg, 1); + if (numPix2 != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned incorrect pixel count %ld\n", numPix2); + return 10; + } + + //Test a subimage. + reg.x1 = 1; + reg.y0 = 1; + reg.y1 = 5; + numPix2 = -1; + in2->row0 = 1; + numPix2 = psImageCountPixelMask(in2, reg, 1); + if (numPix2 != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageCountPixelMask returned incorrect pixel count %ld (!=2)\n", numPix2); + return 11; + } + + psFree(in); + psFree(in2); + return 0; +} + +static psS32 testPsImageStats() +{ + psTraceSetLevel("p_psVectorRobustStats", 0); + + const int N = 32; + const int M = 64; + + psStats * myStats = NULL; + psStats *myStats2 = NULL; + psImage *tmpImage = NULL; + psImage *tmpImage2 = NULL; + psImage *tmpMask = NULL; + psImage *tmpMask2 = NULL; + psS32 testStatus = true; + psS32 nb = 0; + psS32 i = 0; + psS32 j = 0; + psS32 IMAGE_X_SIZE = 0; + psS32 IMAGE_Y_SIZE = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + for ( nb = 0;nb < 7;nb++ ) { + if ( nb == 0 ) { + IMAGE_X_SIZE = 1; + IMAGE_Y_SIZE = 1; + } + if ( nb == 1 ) { + IMAGE_X_SIZE = 1; + IMAGE_Y_SIZE = N; + } + if ( nb == 2 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = 1; + } + if ( nb == 3 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = N; + } + if ( nb == 4 ) { + IMAGE_X_SIZE = N; + IMAGE_Y_SIZE = M; + } + if ( nb == 5 ) { + IMAGE_X_SIZE = M; + IMAGE_Y_SIZE = N; + } + if ( nb == 6 ) { + IMAGE_X_SIZE = M; + IMAGE_Y_SIZE = N; + } + fprintf(stderr, "*******************************\n" ); + if (nb != 6) { + fprintf(stderr, "* IMAGE SIZE is (%d by %d)\n", IMAGE_X_SIZE, IMAGE_Y_SIZE ); + } else { + fprintf(stderr, "* IMAGE SUBSET SIZE is (%d by %d)\n", IMAGE_X_SIZE, IMAGE_Y_SIZE ); + } + fprintf(stderr, "*******************************\n" ); + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + if (nb != 6) { + tmpImage = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_F32 ); + tmpMask = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_U8 ); + tmpImage2 = NULL; + tmpMask2 = NULL; + } else { + tmpImage2 = psImageAlloc( IMAGE_X_SIZE*2, IMAGE_Y_SIZE*2, PS_TYPE_F32 ); + tmpMask2 = psImageAlloc( IMAGE_X_SIZE*2, IMAGE_Y_SIZE*2, PS_TYPE_U8 ); + tmpImage = psImageSubset(tmpImage2, psRegionSet(IMAGE_X_SIZE/4, IMAGE_X_SIZE/4+IMAGE_X_SIZE, + IMAGE_Y_SIZE/4, IMAGE_Y_SIZE/4+IMAGE_Y_SIZE)); + tmpMask = psImageSubset(tmpMask2, psRegionSet(IMAGE_X_SIZE/4, IMAGE_X_SIZE/4+IMAGE_X_SIZE, + IMAGE_Y_SIZE/4, IMAGE_Y_SIZE/4+IMAGE_Y_SIZE)); + } + + for ( i = 0;i < tmpImage->numRows;i++ ) { + for ( j = 0;j < tmpImage->numCols;j++ ) { + tmpImage->data.F32[ i ][ j ] = ( float ) ( i + j ); + } + } + + for ( i = 0;i < tmpMask->numRows;i++ ) { + for ( j = 0;j < tmpMask->numCols;j++ ) { + if ( ( i > ( tmpMask->numRows / 2 ) ) && + ( j > ( tmpMask->numCols / 2 ) ) ) { + tmpMask->data.U8[ i ][ j ] = 1; + } else { + tmpMask->data.U8[ i ][ j ] = 0; + } + } + } + + myStats = psStatsAlloc( PS_STAT_SAMPLE_MEAN ); + /*************************************************************************/ + /* Calculate Sample Mean with no mask */ + /*************************************************************************/ + psStats* tmpStats = myStats; + myStats = psImageStats( myStats, tmpImage, NULL, 0 ); + if ( myStats != tmpStats ) { + fprintf(stderr,"ERROR: input psStats not equal to return psStats\n"); + psAbort("Failed input psStats equal to returned psStats"); + } + fprintf(stderr, "The sample mean was %.2f\n", myStats->sampleMean ); + + /*************************************************************************/ + /* Calculate Sample Mean with mask */ + /*************************************************************************/ + + myStats = psImageStats( myStats, tmpImage, tmpMask, 1 ); + if (myStats == NULL) { + fprintf(stderr,"TEST ERROR: psImageStats() returned NULL.\n"); + } else { + fprintf(stderr, "The sample mean was %.2f\n", myStats->sampleMean ); + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree( myStats ); + psFree( tmpImage ); + psFree( tmpMask ); + psFree( tmpImage2 ); + psFree( tmpMask2 ); + } + + /*************************************************************************/ + /* Test With Various Null Inputs */ + /*************************************************************************/ + + tmpImage = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_F32 ); + tmpMask = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_U8 ); + myStats = psStatsAlloc( 0 ); + + myStats2 = psImageStats( myStats, NULL, NULL, 0 ); + if ( myStats2 != NULL ) { + fprintf(stderr, "ERROR: myStats2 = psImageStats(myStats, NULL, NULL, 0) != NULL\n" ); + } + + myStats2 = psImageStats( NULL, tmpImage, NULL, 0 ); + if ( myStats2 != NULL ) { + fprintf(stderr, "ERROR: myStats2 = psImageStats(NULL, tmpImage, NULL, 0) != NULL\n" ); + } + + myStats2 = psImageStats( myStats, tmpImage, NULL, 0 ); + + psFree( myStats ); + psFree( tmpImage ); + psFree( tmpMask ); + + tmpImage = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_F32); + tmpMask = psImageAlloc( IMAGE_X_SIZE, IMAGE_Y_SIZE, PS_TYPE_U32); + myStats = psStatsAlloc( PS_STAT_SAMPLE_MEAN ); + myStats2 = psImageStats( myStats, tmpImage, tmpMask, 0 ); + if ( myStats2 != NULL ) { + fprintf(stderr, "ERROR: psImageStats did not return null when mask is invalid type.\n"); + } + psFree(tmpImage); + psFree(tmpMask); + psFree(myStats); + + return ( !testStatus ); +} + Index: /branches/rel-1-1/psLib/test/imageops/tst_psImageStructManip.c =================================================================== --- /branches/rel-1-1/psLib/test/imageops/tst_psImageStructManip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/tst_psImageStructManip.c (revision 12167) @@ -0,0 +1,702 @@ +/** @file tst_psImageExtraction.c +* +* @brief Contains the tests for psImageExtraction.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-05 02:48:34 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageSubset(void); +static psS32 testImageCopy(void); +static psS32 testImageTrim(void); + + +testDescription tests[] = { + {testImageSubset,547,"psImageSubset",0,false}, + {testImageSubset,550,"psImageSubset",0,true}, + {testImageCopy,551,"psImageCopy",0,false}, + {testImageTrim, 744, "psImageTrim", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + return ! runTestSuite( stderr, "psImage", tests, argc, argv ); +} + +// #547: psImageSubset shall create child image of a specified size from a parent psImage structure +psS32 testImageSubset(void) +{ + psImage preSubsetStruct; + psImage* original; + psImage* subset1 = NULL; + psImage* subset2 = NULL; + psImage* subset3 = NULL; + psS32 c = 128; + psS32 r = 256; + psRegion region1 = psRegionSet(0,c/2,0,r/2); + psRegion region2 = psRegionSet(c/4,c/4+c/2,r/4,r/4+r/2); + + original = psImageAlloc(c,r,PS_TYPE_U32); + for (psS32 row=0;rowdata.F32[row][col] = row*1000+col; + } + } + + memcpy(&preSubsetStruct,original,sizeof(psImage)); + + subset2 = psImageSubset(original,region2); + + subset3 = psImageSubset(original,region1); + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure members nrow and ncol are equal to " + "the input parameter nrow and ncol respectively."); + + if (subset2->numCols != c/2 || subset2->numRows != r/2) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset output size was not proper(%dx%d, should be %dx%d).", + subset2->numCols, subset2->numRows, c/2,r/2); + return 1; + } + + if (subset3->numCols != c/2 || subset3->numRows != r/2) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset output size was not proper(%dx%d, should be %dx%d).", + subset3->numCols, subset3->numRows, c/2,r/2); + return 2; + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure contains expected values in the " + "row member, if the input psImage structure image contains known values."); + + for (psS32 row=0;rowdata.U32[row][col] != original->data.U32[row+r/4][col+c/4]) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset output #1 was wrong at %dx%d (%d vs %d).", + row,col,subset2->data.U32[row][col], original->data.U32[row+r/4][col+c/4]); + return 3; + } + if (subset3->data.U32[row][col] != original->data.U32[row][col]) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset output #1 was wrong at %dx%d (%d vs %d).", + row,col,subset2->data.U32[row][col], original->data.U32[row][col]); + return 4; + } + } + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure member type is equal to the input " + "psImage structure member type."); + + if (subset2->type.type != PS_TYPE_U32) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset output type was not proper(%d, should be %d).", + subset2->type.type, PS_TYPE_U32); + return 6; + } + if (subset3->type.type != PS_TYPE_U32) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset output type was not proper(%d, should be %d).", + subset3->type.type, PS_TYPE_U32); + return 7; + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure members row0 and col0 are equal to " + "the input parameters row0 and col0 respectively."); + + if (subset2->col0 != c/4 || subset2->row0 != r/4) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't set col0/row0 for subset2 (%d/%d, should be %d/%d).", + subset2->col0,subset2->row0,c/4,r/4); + return 8; + } + if (subset3->col0 != 0 || subset3->row0 != 0) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't set col0/row0 for subset3 (%d/%d, should be %d/%d).", + subset3->col0,subset3->row0,0,0); + return 9; + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure member parent is equal to the " + "input psImage structure pointer image."); + + if (subset2->parent != original || subset3->parent != original) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't set parent."); + return 10; + } + + psLogMsg(__func__,PS_LOG_INFO,"Verify the returned psImage structure member children is null."); + + if (subset2->children != NULL || subset3->children != NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't set children to NULL."); + return 11; + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the input psImage structure image only has the following members " + "changed: 1) Nchildren is increased by one. 2) parent contains pointer psImage structure " + "out at parent[Nchildren-1]."); + + if (original->children == NULL || original->children->n != 2) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't increment number of children by one per subset."); + return 12; + } + if (original->children->data[0] != subset2 || original->children->data[1] != subset3) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't properly store the children pointers."); + return 13; + } + + psLogMsg(__func__,PS_LOG_INFO,"Verify the returned psImage structure pointer is null and program " + "execution doesn't stop, if the input parameter image is null. Also verified the input " + "psImage structure is not modified."); + + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(NULL,region1); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't return NULL when input image was NULL."); + return 14; + } + + psLogMsg(__func__,PS_LOG_INFO,"Verify the returned psImage structure pointer is null and program " + " execution doesn't stop, if the input parameters nrow and/or ncol are zero. Also verify " + "input psImage structure is not modified."); + + memcpy(&preSubsetStruct,original,sizeof(psImage)); + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original, psRegionSet(0,c/2,r/2,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't return NULL when numRows=0."); + return 15; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original,psRegionSet(c/2,c/2,0,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"psImageSubset didn't return NULL when numCols=0."); + return 16; + } + if (memcmp(original,&preSubsetStruct,sizeof(psImage)) != 0) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset changed the original struct though it failed to subset."); + return 17; + } + + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure pointer is null and program " + "execution doesn't stop, if the input parameters row0 and col0 are not within " + "the range of values of psImage structure image."); + + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original, psRegionSet(0,c/2, 0,r*2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset origin was outside of " + "image (via cols)."); + return 18; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original,psRegionSet(0,c*2,0,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset origin was outside of " + "image (via rows)."); + return 19; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original, psRegionSet(-1,c/2,0,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset origin was outside of " + "image (col0=-1)."); + return 20; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original, psRegionSet(0,c/2,-1,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset origin was outside of " + "image (row0=-1)."); + return 21; + } + + psLogMsg(__func__,PS_LOG_INFO, + "Verify the returned psImage structure pointer is null and program " + "execution doesn't stop if the input parameters nrow, ncol, row0 and col0 " + "specify a range of data not within the input psImage structure image. Also " + "verify the input psImage structure is not modified."); + + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original,psRegionSet(0,c/2,0,r+1)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset was outside of image (via rows)."); + return 22; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original, psRegionSet(0,c+1,0,r/2)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset was outside of image (via cols)."); + return 23; + } + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + subset1 = psImageSubset(original,psRegionSet(0,c+1,0,r+1)); + if (subset1 != NULL) { + psError(PS_ERR_UNKNOWN,true, + "psImageSubset didn't return NULL when subset was outside of image (via row+cols)."); + return 24; + } + + psLogMsg(__func__, PS_LOG_INFO, + "psImageFreeChildren shall deallocate any children images of a " + "psImage structure"); + + memcpy(&preSubsetStruct,original,sizeof(psImage)); + + psImageFreeChildren(original); + + // Verify the returned psImage structure member Nchildren is set to zero. + if (original->children != NULL && original->children->n > 0) { + psError(PS_ERR_UNKNOWN,true, + "psImageFreeChildren didn't set number of children to zero."); + return 25; + } + + //Verify the returned psImage structure members type, nrow, ncol, row0, col0, rows + // and parent are not modified. + if (preSubsetStruct.numRows != original->numRows || + preSubsetStruct.numCols != original->numCols || + preSubsetStruct.row0 != original->row0 || + preSubsetStruct.col0 != original->col0) { + + psError(PS_ERR_UNKNOWN,true, + "psImageFreeChildren modified parent's non-children elements."); + return 27; + } + + psFree(original); + + return 0; +} + +psS32 testImageCopy(void) +{ + psImage* img = NULL; + psImage* img2 = NULL; + psImage* img3 = NULL; + psImage* img4 = NULL; + psU32 c = 128; + psU32 r = 256; + + img = psImageAlloc(c,r,PS_TYPE_F32); + for (unsigned row=0;rowdata.F32[row]; + for (unsigned col=0;coldata.F32[row]; + for (unsigned col=0;coltype.type != img->type.type) { + psError(PS_ERR_UNKNOWN, true,"output image is not the same type as input image"); + return 4; + } + for (psU32 row=0;rowdata.F32[row]; + psF32* imgOutRow = img4->data.F32[row]; + for (unsigned col=0;coldata.IN[row]; \ + for (unsigned col=0;coldata.IN[row]; \ + ps##OUT* img2Row = img2->data.OUT[row]; \ + for (psU32 col=0;col 0.5) { \ + psError(PS_ERR_UNKNOWN, true,"Input image was changed at %d,%d!", \ + col,row); \ + return 2; \ + } \ + if (abs(img2Row[col] - (ps##OUT)(imgRow[col])) > 0.5) { \ + psError(PS_ERR_UNKNOWN, true, \ + "returned psImage values after copy don't match at %d,%d " \ + "(%d vs %d)",\ + col,row,img2Row[col], (ps##OUT)(imgRow[col])); \ + return 2; \ + } \ + } \ + } + + #define testImageCopyTypes(IN) \ + printf("to psF32\n"); \ + testImageCopyType(IN,F32);\ + printf("to psF64\n"); \ + testImageCopyType(IN,F64); \ + printf("to psU8\n"); \ + testImageCopyType(IN,U8); \ + printf("to psU16\n"); \ + testImageCopyType(IN,U16); \ + printf("to psU32\n"); \ + testImageCopyType(IN,U32); \ + printf("to psS8\n"); \ + testImageCopyType(IN,S8);\ + printf("to psS16\n"); \ + testImageCopyType(IN,S16);\ + printf("to psS32\n"); \ + testImageCopyType(IN,S32); + + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psU8"); + testImageCopyTypes(U8); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psU16"); + testImageCopyTypes(U16); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psU32"); + testImageCopyTypes(U32); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psS8"); + testImageCopyTypes(S8); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psS16"); + testImageCopyTypes(S16); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psS32"); + testImageCopyTypes(S32); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psF32"); + testImageCopyTypes(F32); + psLogMsg(__func__,PS_LOG_INFO,"Image Copy Test for psF64"); + testImageCopyTypes(F64); + + // Verify the returned psImage structure pointer is null and program + // execution doesn't stop, if the input parameter input is null. + psLogMsg(__func__,PS_LOG_INFO,"An error should follow..."); + img3 = psImageCopy(NULL,NULL,PS_TYPE_F32); + if (img3 != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageCopy didn't return NULL when input image was NULL."); + return 3; + } + + psFree(img); + psFree(img2); + psFree(img3); + psFree(img4); + + return 0; +} + +static psS32 testImageTrim(void) +{ + psS32 r = 200; + psS32 c = 300; + psS32 qtrR = r/4; + psS32 qtrC = c/4; + psS32 halfR = r/2; + psS32 halfC = c/2; + psRegion centerHalf = {qtrC,qtrC+halfC,qtrR,qtrR+halfR}; + + psImage* image = psImageAlloc(c,r,PS_TYPE_F32); + for (psS32 row = 0; row < image->numRows; row++) { + for (psS32 col = 0; col < image->numCols; col++) { + image->data.F32[row][col] = (psF32)col + (psF32)row/1000.0f; + } + } + + /* + 1. invoke psImageTrim with non-NULL image, and a valid region + x0,y0->x1,y1 (using only positive values). Verify that: + a. the return psImage is the same as the input psImage. + b. the size of the psImage is x1-x0 by y1-y0. + c. the pixel values coorespond to the region [x0:x1-1,y0:y1-1]. + */ + psImage* image1 = psImageCopy(NULL,image,PS_TYPE_F32); + psImage* image2 = psImageTrim(image1,centerHalf); + + if (image1 != image2) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not same as input value. Not done in-place?"); + return 1; + } + + if (image2->numCols != halfC || + image2->numRows != halfR) { + psLogMsg(__func__,PS_LOG_ERROR, + "The resulting image size was %dx%d, but should be %dx%d.", + image2->numCols, image2->numRows, + halfC, halfR); + return 2; + } + + for (psS32 row = 0; row < image2->numRows; row++) { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - image->data.F32[row+qtrR][col+qtrC]) + > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR, + "The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + return 3; + } + } + } + + /* + 2. invoke psImageTrim with non-NULL image and valid region where x1=0, + y1=0. Verify that: + a. the return psImage size is numCols-x0 by numRows-y0 + b. the pixel values coorespond to the region + [x0:numCols-1,y0:numRows-1]. + */ + image1 = psImageCopy(image1,image,PS_TYPE_F32); + image2 = psImageTrim(image1,psRegionSet(qtrC,0,qtrR,0)); + + if (image1 != image2) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not same as input value. Not done in-place?"); + return 11; + } + + if (image2->numCols != image->numCols-qtrC || + image2->numRows != image->numRows-qtrR) { + psLogMsg(__func__,PS_LOG_ERROR, + "The resulting image size was %dx%d, but should be %dx%d.", + image2->numCols, image2->numRows, + image->numCols-qtrC, image->numRows-qtrR); + return 12; + } + + for (psS32 row = 0; row < image2->numRows; row++) { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - + image->data.F32[row+qtrR][col+qtrC]) > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR, + "The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + return 13; + } + } + } + + /* + 4. invoke psImageTrim with x1<0, y1<0. Verify: + a. the psImage size is (numCols+x1)-x0 by (numRows+y1)-y0. + b. the pixel values coorespond to the region + [x0:numCols+x1-1,y0:numRows+y1-1]. + + */ + image1 = psImageCopy(image1,image,PS_TYPE_F32); + image2 = psImageTrim(image1,psRegionSet(qtrC,-qtrC, qtrR,-qtrR)); + + if (image1 != image2) { + psLogMsg(__func__,PS_LOG_ERROR, + "Return value not same as input value. Not done in-place?"); + return 21; + } + + if (image2->numCols != image->numCols-qtrC-qtrC || + image2->numRows != image->numRows-qtrR-qtrR) { + psLogMsg(__func__,PS_LOG_ERROR, + "The resulting image size was %dx%d, but should be %dx%d.", + image2->numCols, image2->numRows, + image->numCols-qtrC, image->numRows-qtrR); + return 22; + } + + for (psS32 row = 0; row < image2->numRows; row++) { + for (psS32 col = 0; col < image2->numCols; col++) { + if (fabsf(image2->data.F32[row][col] - + image->data.F32[row+qtrR][col+qtrC]) > FLT_EPSILON) { + psLogMsg(__func__,PS_LOG_ERROR, + "The value at (%d,%d) was %g, but should be %g.", + col,row, + image2->data.F32[row][col], + image->data.F32[row+qtrR][col+qtrC]); + return 23; + } + } + } + + psFree(image2); + + /* + 6. invoke psImageTrim with image=NULL Verify: + a. execution does not cease. + b. return value is NULL + c. appropriate error is generated. + */ + + image2 = psImageTrim(NULL, psRegionSet(qtrC,0,qtrR,0)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given a NULL input image."); + return 31; + } + psErr* err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for NULL input image."); + psErrorStackPrint(stderr,"Error Stack:"); + return 32; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(-1,0,0,0)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given x0=-1."); + return 33; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for x0=-1."); + psErrorStackPrint(stderr,"Error Stack:"); + return 34; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,-1,0)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given y0=-1."); + return 35; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for y0=-1."); + psErrorStackPrint(stderr,"Error Stack:"); + return 36; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,image->numCols+1,0,0)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given x1=numCols+1."); + return 37; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for x1=numCols+1."); + psErrorStackPrint(stderr,"Error Stack:"); + return 38; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,0,image->numRows+1)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given y1=numRows+1."); + return 39; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for y1=numRows+1."); + psErrorStackPrint(stderr,"Error Stack:"); + return 40; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,(((psF32)image->numCols)*-1.0),0,0)); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given x1=-numCols."); + return 41; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for x1=-numCols."); + psErrorStackPrint(stderr,"Error Stack:"); + return 42; + } + psFree(err); + + image1 = psImageCopy(NULL,image,PS_TYPE_F32); + image2 = psImageTrim(image1, psRegionSet(0,0,0,(((psF32)image->numRows)*-1.0))); + + if (image2 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not return NULL given y1=-numRows."); + return 41; + } + err = psErrorLast(); + if (err == NULL || err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psImageTrim did not generate an appropriate error for y1=-numRows."); + psErrorStackPrint(stderr,"Error Stack:"); + return 42; + } + psFree(err); + + psFree(image); + return 0; +} Index: /branches/rel-1-1/psLib/test/imageops/verified/fBiOut.fits =================================================================== --- /branches/rel-1-1/psLib/test/imageops/verified/fBiOut.fits (revision 12167) +++ /branches/rel-1-1/psLib/test/imageops/verified/fBiOut.fits (revision 12167) @@ -0,0 +1,6427 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -32 / number of bits per data pixel NAXIS = 3 / number of data axes 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþXTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿ‚ÿƒÿ„ÿ +ÿ†ÿ‡ÿˆÿ‰ÿŠÿ‹ÿŒÿÿŽÿÿÿ‘ÿ’ÿ“ÿ”ÿ•ÿ–ÿ—ÿ˜ÿ™ÿšÿ›ÿœÿÿžÿŸÿ ÿ¡ÿ¢ÿ£ÿ€ÿ¥ÿŠÿ§ÿšÿ©ÿªÿ«ÿ¬ÿ­ÿ®ÿ¯ÿ°ÿ±ÿ²ÿ³ÿŽÿµÿ¶ÿ·ÿžÿ¹ÿºÿ»ÿŒÿœÿŸÿ¿ÿÀÿÁÿ„ÿ 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!"#$%&'()*+,-./0123456789:;<= + + + + + + + !"#$%&'()*+,-./0123456789:;<=>?XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿƒÿƒÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ +ÿ„ÿƒÿ„ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿˆÿ‡ÿ†ÿ +ÿ +ÿ 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿ‚ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ +ÿƒÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ 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ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿûÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿùÿøÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿýÿûÿùÿ÷ÿõÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿúÿøÿöÿôÿòÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿþÿüÿùÿ÷ÿõÿóÿñÿïÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ 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ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿì)('&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿê'&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿè%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæ#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿä!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâ + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿà + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØÿ×ÿÖ + + + + 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+ÿ„ÿÁÿÀÿ¿ÿŸÿœÿŒÿ»ÿºÿ¹ÿžÿ·ÿ¶ÿµÿŽÿ³ÿ²ÿ±ÿ°ÿ¯ÿ®ÿ­ÿ¬ÿ«ÿªÿ©ÿšÿ§ÿŠÿ¥ÿ€ÿ£ÿ¢ÿ¡ÿ ÿŸÿžÿÿœÿ›ÿšÿ™ÿ˜ÿ—ÿ–ÿ•ÿ”ÿ“ÿ’ÿ‘ÿÿÿŽÿÿŒÿ‹ÿŠÿ‰ÿˆÿ‡ÿ†ÿ +ÿ„ÿƒÿ‚XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþXTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿ‚ÿƒÿ„ÿ +ÿ†ÿ‡ÿˆÿ‰ÿŠÿ‹ÿŒÿÿŽÿÿÿ‘ÿ’ÿ“ÿ”ÿ•ÿ–ÿ—ÿ˜ÿ™ÿšÿ›ÿœÿÿžÿŸÿ ÿ¡ÿ¢ÿ£ÿ€ÿ¥ÿŠÿ§ÿšÿ©ÿªÿ«ÿ¬ÿ­ÿ®ÿ¯ÿ°ÿ±ÿ²ÿ³ÿŽÿµÿ¶ÿ·ÿžÿ¹ÿºÿ»ÿŒÿœÿŸÿ¿ÿÀÿÁÿ„ÿ 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!"#$%&'()*+,-./0123456789:;<= + + + + + + + !"#$%&'()*+,-./0123456789:;<=>?XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ„ÿƒÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ†ÿ +ÿ 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'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 64 / length of data axis 1 NAXIS2 = 64 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END ÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿ‚ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ +ÿƒÿþÿüÿúÿøÿöÿôÿòÿðÿîÿìÿêÿèÿæÿäÿâÿàÿÞÿÜÿÚÿØÿÖÿÔÿÒÿÐÿÎÿÌÿÊÿÈÿÆÿÄÿÂÿÀÿŸÿŒÿºÿžÿ¶ÿŽÿ²ÿ°ÿ®ÿ¬ÿªÿšÿŠÿ€ÿ¢ÿ ÿžÿœÿšÿ˜ÿ–ÿ”ÿ’ÿÿŽÿŒÿŠÿˆÿ†ÿ„ÿÿÿýÿûÿùÿ÷ÿõÿóÿñÿïÿíÿëÿéÿçÿåÿãÿáÿßÿÝÿÛÿÙÿ×ÿÕÿÓÿÑÿÏÿÍÿËÿÉÿÇÿÅÿÃÿÁÿ¿ÿœÿ»ÿ¹ÿ·ÿµÿ³ÿ±ÿ¯ÿ­ÿ«ÿ©ÿ§ÿ¥ÿ£ÿ¡ÿŸÿÿ›ÿ™ÿ—ÿ•ÿ“ÿ‘ÿÿÿ‹ÿ‰ÿ‡ÿ 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ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿì)('&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿê'&%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿè%$#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæ#"!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿä!  + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâ + + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿà + + + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØ + + + + ÿÿÿþÿýÿüÿûÿúÿùÿøÿ÷ÿöÿõÿôÿóÿòÿñÿðÿïÿîÿíÿìÿëÿêÿéÿèÿçÿæÿåÿäÿãÿâÿáÿàÿßÿÞÿÝÿÜÿÛÿÚÿÙÿØÿ×ÿÖ + + + + 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+ÿ„ÿÁÿÀÿ¿ÿŸÿœÿŒÿ»ÿºÿ¹ÿžÿ·ÿ¶ÿµÿŽÿ³ÿ²ÿ±ÿ°ÿ¯ÿ®ÿ­ÿ¬ÿ«ÿªÿ©ÿšÿ§ÿŠÿ¥ÿ€ÿ£ÿ¢ÿ¡ÿ ÿŸÿžÿÿœÿ›ÿšÿ™ÿ˜ÿ—ÿ–ÿ•ÿ”ÿ“ÿ’ÿ‘ÿÿÿŽÿÿŒÿ‹ÿŠÿ‰ÿˆÿ‡ÿ†ÿ +ÿ„ÿƒÿ‚XTENSION= 'IMAGE ' / IMAGE extension BITPIX = 16 / number of bits per data pixel NAXIS = 3 / number of data axes NAXIS1 = 91 / length of data axis 1 NAXIS2 = 91 / length of data axis 2 NAXIS3 = 1 / length of data axis 3 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BZERO = 0.000000000000E+00 / Pixel Value Offset BSCALE = 1.000000000000E+00 / Pixel Value Scale END 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+ÿ‡ÿ‰ÿ‹ÿÿÿ‘ÿ“ÿ•ÿ—ÿ™ÿ›ÿÿŸÿ¡ÿ£ÿ¥ÿ§ÿ©ÿ«ÿ­ÿ¯ÿ±ÿ³ÿµÿ·ÿ¹ÿ»ÿœÿ¿ÿÁÿÃÿÅÿÇÿÉÿËÿÍÿÏÿÑÿÓÿÕÿ×ÿÙÿÛÿÝÿßÿáÿãÿåÿçÿéÿëÿíÿïÿñÿóÿõÿ÷ÿùÿûÿýÿÿÿ‚ÿ„ÿ†ÿˆÿŠÿŒÿŽÿÿ’ÿ”ÿ–ÿ˜ÿšÿœÿžÿ ÿ¢ÿ€ÿŠÿšÿªÿ¬ÿ®ÿ°ÿ²ÿŽÿ¶ÿžÿºÿŒÿŸÿÀÿÂÿÄÿÆÿÈÿÊÿÌÿÎÿÐÿÒÿÔÿÖÿØÿÚÿÜÿÞÿàÿâÿäÿæÿèÿêÿìÿîÿðÿòÿôÿöÿøÿúÿüÿþ Index: /branches/rel-1-1/psLib/test/jpeg/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/jpeg/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/jpeg/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +temp +.deps +.libs +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/jpeg/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/jpeg/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/jpeg/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ +AM_CPPFLAGS = $(SRCINC) -I$(top_srcdir)/test/tap/src $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/math/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/math/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/math/.cvsignore (revision 12167) @@ -0,0 +1,46 @@ +temp +.deps +.libs +Makefile +Makefile.in +seed_msglog1.txt +seed_msglog2.txt +*.bb +*.bbg +*.da +gmon.out + +tap_psHist00 +tap_psHist01 +tap_psHist02 +tap_psHist03 +tap_psMD5 +tap_psMatrix01 +tap_psMatrix02 +tap_psMatrix03 +tap_psMatrix04 +tap_psMatrix05 +tap_psMatrix06 +tap_psMatrix07 +tap_psPolyFit1D +tap_psPolyFit2D +tap_psPolyFit3D +tap_psPolyFit4D +tap_psPolynomial +tap_psPolynomialEval1D +tap_psPolynomialEval2D +tap_psPolynomialEval3D +tap_psPolynomialEval4D +tap_psPolynomialUtils_Derivatives +tap_psSparse +tap_psStats00 +tap_psStats01 +tap_psStats02 +tap_psStats03 +tap_psStats05 +tap_psStats06 +tap_psStats07 +tap_psStats08 +tap_psStats09 +tap_psStatsTiming +tap_psStats_Sample_01 Index: /branches/rel-1-1/psLib/test/math/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/math/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/math/Makefile.am (revision 12167) @@ -0,0 +1,61 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psHist00 \ + tap_psHist01 \ + tap_psHist02 \ + tap_psHist03 \ + tap_psMD5 \ + tap_psMatrix01 \ + tap_psMatrix02 \ + tap_psMatrix03 \ + tap_psMatrix04 \ + tap_psMatrix05 \ + tap_psMatrix06 \ + tap_psMatrix07 \ + tap_psPolyFit1D \ + tap_psPolyFit2D \ + tap_psPolyFit3D \ + tap_psPolyFit4D \ + tap_psPolynomial \ + tap_psPolynomialEval1D \ + tap_psPolynomialEval2D \ + tap_psPolynomialEval3D \ + tap_psPolynomialEval4D \ + tap_psPolynomialUtils_Derivatives \ + tap_psSparse \ + tap_psStats00 \ + tap_psStats01 \ + tap_psStats02 \ + tap_psStats03 \ + tap_psStats05 \ + tap_psStats06 \ + tap_psStats07 \ + tap_psStats08 \ + tap_psStats09 \ + tap_psStatsTiming \ + tap_psFunc01 \ + tap_psStats_Sample_01 + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* core core.* *~ *.bb *.bbg *.da gmon.out + +test: check + $(top_srcdir)/test/test.pl Index: /branches/rel-1-1/psLib/test/math/tap_psFunc01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psFunc01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psFunc01.c (revision 12167) @@ -0,0 +1,55 @@ +/***************************************************************************** + This routine must ensure that the psGaussian() shall evaluate a + specified Gaussian at some X. + + It also tests the p_psGaussianDev() procedure. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define MY_MEAN 5.0 +#define MY_STDEV 2.0 +#define TOLERANCE 0.01 +psF32 truth1[10] = {0.008764, 0.026995, 0.064759, 0.120985, 0.176033, 0.199471, 0.176033, 0.120985, 0.064759, 0.026995}; +psF32 truth2[10] = {0.043937, 0.135335, 0.324652, 0.606531, 0.882497, 1.000000, 0.882497, 0.606531, 0.324652, 0.135335}; + +int main() +{ + psLogSetFormat("HLNM"); + plan_tests(4); + + // Test the psGaussian(): normalized version + { + psMemId id = psMemGetId(); + + bool errorFlag = false; + for (psS32 x = 0 ; x < (int) (MY_MEAN * 2.0) ; x++) + { + psF32 actual = psGaussian((psF32) x, MY_MEAN, MY_STDEV, true); + if (fabs(truth1[x] - actual) > TOLERANCE) { + diag("ERROR: the Gaussian at %.2f was %f, should be %f", (psF32) x, actual, truth1[x]); + errorFlag = true; + } + } + ok(!errorFlag, "psGaussian() produced consistent results (normalized)"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test the psGaussian(): non-normalized version + { + psMemId id = psMemGetId(); + bool errorFlag = false; + for (psS32 x = 0 ; x < (int) (MY_MEAN * 2.0) ; x++) + { + psF32 actual = psGaussian((psF32) x, MY_MEAN, MY_STDEV, false); + if (fabs(truth2[x] - actual) > TOLERANCE) { + diag("ERROR: the Gaussian at %.2f was %f, should be %f", (psF32) x, actual, truth1[x]); + errorFlag = true; + } + } + ok(!errorFlag, "psGaussian() produced consistent results (non-normalized)"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psHist00.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psHist00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psHist00.c (revision 12167) @@ -0,0 +1,81 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + allocated and deallocated by the procedure psHistogramAlloc(). + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOLERANCE 0.001 + +psS32 genericTest(psS32 numBins, psS32 lower, psS32 higher) +{ + // Allocate the psHistogram structure + { + psMemId id = psMemGetId(); + psHistogram *myHist = psHistogramAlloc(lower, higher, numBins); + ok(myHist != NULL, "psHistogram allocated successfully"); + skip_start(myHist == NULL, 7, "Skipping tests because psHistogramAlloc() failed"); + ok(myHist->nums->n = numBins, "psHistogramAlloc() set the correct number of bins"); + ok(myHist->bounds->n == numBins+1, "psHistogramAlloc() set the correct number of bounds"); + bool errorFlag = false; + for (int i=0;inums->data.F32[i] != 0.0) { + diag("ERROR: myHist->nums->data.U32[%d] not initialized to 0.\n", i); + errorFlag = true; + } + myHist->nums->data.F32[i] = 0.0; + } + ok(!errorFlag, "psHistogramAlloc() initialized the data to 0.0"); + ok(myHist->minNum == 0, "psHistogramAlloc() initialized minNum to 0.0"); + ok(myHist->maxNum == 0, "psHistogramAlloc() initialized maxNum to 0.0"); + ok(myHist->uniform == true, "psHistogramAlloc() initialized ->uniform to true"); + + errorFlag = false; + for (int i=0;ibounds->data.F32[i]) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%6.3f - %6.3f)\n", i, + myHist->bounds->data.F32[i], + myHist->bounds->data.F32[i+1]); + diag("Was %f, expected %f\n", myHist->bounds->data.F32[i], expectedBound); + errorFlag = true; + } + } + ok(!errorFlag, "psHistogramAlloc() set the histogram bounds correctly"); + + skip_end(); + psFree(myHist); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // XXX: How should we test these kinds of things? + if (0) { + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + psHistogram *myHist = psHistogramAlloc(higher, lower, 1); + if (myHist != NULL) { + printf("ERROR: myHist != NULL\n"); + } + } + return(1); +} + +psS32 main() +{ + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + plan_tests(36); + + genericTest(1, 1, 2); + genericTest(2, 1, 3); + genericTest(10, 1, 11); + genericTest(20, 1, 21); +} Index: /branches/rel-1-1/psLib/test/math/tap_psHist01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psHist01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psHist01.c (revision 12167) @@ -0,0 +1,85 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + allocated and deallocated by the procedure psHistogramAllocGeneric(). + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOLERANCE 0.001 + +psS32 genericTest(psS32 numBins, psS32 lower, psS32 higher) +{ + // Allocate the psHistogram structure + { + psMemId id = psMemGetId(); + psVector *myBounds = psVectorAlloc(numBins+1, PS_TYPE_F32); + myBounds->n = myBounds->nalloc; + for (int i=0;idata.F32[i] = lower + ((higher - lower) / (float) numBins) * + (float) i; + } + psHistogram *myHist = psHistogramAllocGeneric(myBounds); + ok(myHist != NULL, "psHistogram allocated successfully"); + skip_start(myHist == NULL, 7, "Skipping tests because psHistogramAlloc() failed"); + ok(myHist->nums->n = numBins, "psHistogramAllocGeneric() set the correct number of bins"); + ok(myHist->bounds->n == numBins+1, "psHistogramAllocGeneric() set the correct number of bounds"); + bool errorFlag = false; + for (int i=0;inums->data.F32[i] != 0.0) { + diag("ERROR: myHist->nums->data.F32[%d] not initialized to 0.\n", i); + errorFlag = false; + } + myHist->nums->data.F32[i] = 0.0; + } + ok(!errorFlag, "psHistogramAllocGeneric() initialized the data to 0.0"); + ok(myHist->minNum == 0, "psHistogramAllocGeneric() initialized minNum to 0.0"); + ok(myHist->maxNum == 0, "psHistogramAllocGeneric() initialized maxNum to 0.0"); + ok(myHist->uniform == false, "psHistogramAllocGeneric() initialized ->uniform to false"); + + errorFlag = false; + for (int i=0;ibounds->data.F32[i]) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%6.3f - %6.3f)\n", i, + myHist->bounds->data.F32[i], + myHist->bounds->data.F32[i+1]); + diag("Was %f, expected %f\n", myHist->bounds->data.F32[i], expectedBound); + errorFlag = true; + } + } + ok(!errorFlag, "psHistogramAlloc() set the histogram bounds correctly"); + + skip_end(); + psFree(myHist); + psFree(myBounds); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + + } + return(1); +} + + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + plan_tests(36); + + genericTest(1, 1, 2); + genericTest(2, 1, 3); + genericTest(10, 1, 11); + genericTest(20, 1, 21); +} Index: /branches/rel-1-1/psLib/test/math/tap_psHist02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psHist02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psHist02.c (revision 12167) @@ -0,0 +1,172 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + populated by the procedure psGetArrayHistogram(). + +*****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOLERANCE 0.001 +#define NUM_DATA 10000 + +psS32 genericTest(psS32 numBins, psS32 lower, psS32 higher) +{ + if ((numBins%2) != 0) { + diag("Configuration error: must run this test with even number of bins"); + return(0); + } + if ((NUM_DATA%numBins) != 0) { + diag("Configuration error: NUM_DATA must be an integer multiple of numBins"); + return(0); + } + + // Allocate the psHistogram structure, ensure that psVectorHistogram() sets + // the data correctly when called with a NULL mask. + { + psMemId id = psMemGetId(); + psVector *myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + myData->n = myData->nalloc; + for (int i = 0;i < NUM_DATA;i++) + { + myData->data.F32[ i ] = lower + ( ( higher - lower ) / ( float ) NUM_DATA ) * ( float ) i; + } + + psHistogram *myHist = psHistogramAlloc(lower, higher, numBins ); + bool rc = psVectorHistogram( myHist, myData, NULL, NULL, 0 ); + ok(rc == false, "psVectorHistogram() returned TRUE"); + skip_start(myHist == NULL, 1, "Skipping tests because psVectorHistogram() returned NULL"); + + bool errorFlag = false; + for (int i = 0;i < numBins;i++) + { + if (fabs(myHist->nums->data.F32[i] - (NUM_DATA/numBins)) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%.2f - %.2f) data (%.2f) should be (%.2f)\n", + i, + myHist->bounds->data.F32[i], + myHist->bounds->data.F32[i + 1], + myHist->nums->data.F32[i], (float) (NUM_DATA/numBins)); + errorFlag = true; + } + } + ok(!errorFlag, "psVectorHistogram() correctly set the histogram"); + skip_end(); + psFree(myHist); + psFree(myData); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate the psHistogram structure, ensure that psVectorHistogram() sets + // the data correctly when called with a mask. + { + psMemId id = psMemGetId(); + psVector *myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + myData->n = myData->nalloc; + for (int i = 0;i < NUM_DATA;i++) + { + myData->data.F32[ i ] = lower + ( ( higher - lower ) / ( float ) NUM_DATA ) * ( float ) i; + } + + psVector *myMask = psVectorAlloc( NUM_DATA, PS_TYPE_U8 ); + myMask->n = myMask->nalloc; + for (int i = 0;i < NUM_DATA;i++) + { + if ( i >= ( NUM_DATA / 2 ) ) { + myMask->data.U8[ i ] = 1; + } else { + myMask->data.U8[ i ] = 0; + } + } + psHistogram *myHist = psHistogramAlloc(lower, higher, numBins ); + bool rc = psVectorHistogram(myHist, myData, NULL, myMask, 1); + ok(rc == false, "psVectorHistogram() returned TRUE"); + skip_start(myHist == NULL, 1, "Skipping tests because psVectorHistogram() returned NULL"); + + bool errorFlag = false; + for (int i = 0;i < numBins;i++) + { + if (i < numBins/2) { + if (fabs(myHist->nums->data.F32[i] - (NUM_DATA/numBins)) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%6.3f - %6.3f) data (%f) should be (%.2f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ], (float) (NUM_DATA/numBins) ); + errorFlag = true; + } + } else { + if (fabs(myHist->nums->data.F32[i]) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%6.3f - %6.3f) data (%f) should be (%.2f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ], 0.0); + errorFlag = true; + } + } + } + ok(!errorFlag, "psVectorHistogram() correctly set the histogram"); + skip_end(); + psFree(myHist); + psFree(myMask); + psFree(myData); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Verify the return value is null and program execution doesn't stop, + // if input parameter myHist is null. + { + psMemId id = psMemGetId(); + psVector *myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + myData->n = myData->nalloc; + for (int i = 0;i < NUM_DATA;i++) + { + myData->data.F32[ i ] = lower + ( ( higher - lower ) / ( float ) NUM_DATA ) * ( float ) i; + } + ok(false == psVectorHistogram( NULL, myData, NULL, NULL, 0 ), + "psVectorHistogram() returned FALSE with a NULL psHistogram input"); + psFree( myData ); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Verify the return value is the same as the input parameter myHist and + // program execution doesn't stop, if the input parameter myArray is + // null. + { + psMemId id = psMemGetId(); + psHistogram *myHist = psHistogramAlloc(lower, higher, numBins ); + ok(true == psVectorHistogram( myHist, NULL, NULL, NULL, 0 ), + "psVectorHistogram() returns TRUE with a NULL input array"); + psFree(myHist); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Verify the return value is the same as the input parameter myHist and + // program execution doesn't stop, if the input parameter myArray has no + // elements. + // XXX: This code segment is commented out because psVectorAlloc returns + // NULL if called with an N element data. + { + psMemId id = psMemGetId(); + psVector *myData = psVectorAlloc(0, PS_TYPE_F32); + psHistogram *myHist = psHistogramAlloc(lower, higher, numBins); + ok(true == psVectorHistogram( myHist, NULL, NULL, NULL, 0 ), + "psVectorHistogram() returns TRUE with an empty input array"); + psFree(myHist); + psFree(myData); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return(1); +} + +psS32 main() +{ + psLogSetFormat("HLNM"); + plan_tests(48); + + genericTest(2, 1, 3); + genericTest(10, 1, 11); + genericTest(20, 1, 21); + genericTest(500, 1, 501); +} Index: /branches/rel-1-1/psLib/test/math/tap_psHist03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psHist03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psHist03.c (revision 12167) @@ -0,0 +1,94 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + allocated and deallocated by the procedure psHistogramAllocGeneric() and + that it can be populated correctly by psVectorHistogram(). + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define ERROR_TOLERANCE 0.001 +#define NUM_DATA 20 + +psS32 genericTest(psS32 numBins, psS32 lower, psS32 higher) +{ + if (numBins > NUM_DATA) { + diag("Configuration error: NUM_DATA must be larger than numBins"); + return(0); + } + + { + psMemId id = psMemGetId(); + psVector *myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + myData->n = myData->nalloc; + for (int i = 0;i < NUM_DATA;i++ ) { + myData->data.F32[ i ] = lower + ((higher-lower) / (float) NUM_DATA) * (float) i; + } + + psVector *myBounds = psVectorAlloc(numBins+1, PS_TYPE_F32); + myBounds->n = myBounds->nalloc; + for (int i=0;idata.F32[i] = lower + ((higher - lower) / (float) numBins) * (float) i; + } + + psHistogram *myHist = psHistogramAllocGeneric(myBounds); + ok(myHist->nums->n == numBins, "psHistogramAllocGeneric() set correct number of bins"); + ok(myHist->bounds->n == numBins+1, "sHistogramAllocGeneric() set correct number of bounds"); + + bool errorFlag = false; + for (int i=0;inums->data.F32[i]) > ERROR_TOLERANCE) { + diag("ERROR: myHist->nums->data.F32[%d] not initialized to 0.\n", i); + errorFlag = true; + } + myHist->nums->data.F32[i] = 0.0; + } + ok(!errorFlag, "psVectorHistogram() correctly initialized the bins"); + ok(myHist->minNum == 0, "psHistogramAlloc() initialized minNum to 0.0"); + ok(myHist->maxNum == 0, "psHistogramAlloc() initialized maxNum to 0.0"); + ok(myHist->uniform == false, "psHistogramAlloc() initialized ->uniform to false"); + + bool rc = psVectorHistogram( myHist, myData, NULL, NULL, 0 ); + ok(rc == true, "psVectorHistogram() returned TRUE"); + // XXX: skip_start here + for (int i=0;inums->data.F32[i] - expected) > ERROR_TOLERANCE) { + diag("Bin number %d bounds: (%.2f - %.2f): data: (%.2f) should be (%.2f)\n", i, + myHist->bounds->data.F32[i], + myHist->bounds->data.F32[i+1], + myHist->nums->data.F32[i], expected); + errorFlag = true; + } + } + ok(!errorFlag, "psVectorHistogram() correctly initialized the bins"); + + psFree(myData); + psFree(myHist); + psFree(myBounds); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return (1); +} + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel(".psLib", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + plan_tests(36); + + genericTest(1, 1, 2); + genericTest(2, 1, 3); + genericTest(10, 1, 11); + genericTest(20, 1, 21); +} Index: /branches/rel-1-1/psLib/test/math/tap_psMD5.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMD5.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMD5.c (revision 12167) @@ -0,0 +1,142 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +// The official MD5 test cases +#define NUM_TESTS 7 +static const struct +{ + const char *input; // The input string + const char result[16]; // The hash + const char string[34]; // The stringified hash +} +tests[] = + { + { "", + "\xd4\x1d\x8c\xd9\x8f\x00\xb2\x04\xe9\x80\x09\x98\xec\xf8\x42\x7e", + "d41d8cd98f00b204e9800998ecf8427e" }, + { "a", + "\x0c\xc1\x75\xb9\xc0\xf1\xb6\xa8\x31\xc3\x99\xe2\x69\x77\x26\x61", + "0cc175b9c0f1b6a831c399e269772661" }, + { "abc", + "\x90\x01\x50\x98\x3c\xd2\x4f\xb0\xd6\x96\x3f\x7d\x28\xe1\x7f\x72", + "900150983cd24fb0d6963f7d28e17f72" }, + { "message digest", + "\xf9\x6b\x69\x7d\x7c\xb7\x93\x8d\x52\x5a\x2f\x31\xaa\xf1\x61\xd0", + "f96b697d7cb7938d525a2f31aaf161d0" }, + { "abcdefghijklmnopqrstuvwxyz", + "\xc3\xfc\xd3\xd7\x61\x92\xe4\x00\x7d\xfb\x49\x6c\xca\x67\xe1\x3b", + "c3fcd3d76192e4007dfb496cca67e13b" }, + { "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789", + "\xd1\x74\xab\x98\xd2\x77\xd9\xf5\xa5\x61\x1c\x2c\x9f\x41\x9d\x9f", + "d174ab98d277d9f5a5611c2c9f419d9f" }, + { "12345678901234567890123456789012345678901234567890123456789012345678901234567890", + "\x57\xed\xf4\xa2\x2b\xe3\xc9\x55\xac\x49\xda\x2e\x21\x07\xb6\x7a", + "57edf4a22be3c955ac49da2e2107b67a" } + }; + + +int main(void) +{ + plan_tests(NUM_TESTS * 3 + // Strings + NUM_TESTS * 2 + // Vectors + (NUM_TESTS - 1) * 2 + // Images (except the empty string test) + (NUM_TESTS - 2) * 3 + // Sub-images (except the empty and "a" string test) + 1 // Memory leaks + ); + + diag("psMD5 tests"); + + // Strings + for (int i = 0; i < NUM_TESTS; i++) { + psString string = psStringCopy(tests[i].input); // String to test + psVector *hash = psStringMD5(string); // The MD5 hash + ok(hash, "hash generated"); + + skip_start(!hash, 2, "Skipping tests because hash calculation failed"); + + ok(memcmp(hash->data.U8, tests[i].result, 16) == 0, "hash matches"); + + psString hashString = psMD5toString(hash); // String of the hash + ok(strcmp(hashString, tests[i].string) == 0, "hash string matches"); + psFree(hashString); + + skip_end(); + + psFree(hash); + psFree(string); + } + + // Vectors + for (int i = 0; i < NUM_TESTS; i++) { + psVector *vector = psVectorAlloc(strlen(tests[i].input), PS_TYPE_U8); // Vector to test + memcpy(vector->data.U8, tests[i].input, strlen(tests[i].input)); + psVector *hash = psVectorMD5(vector); // The MD5 hash + ok(hash, "hash generated"); + + skip_start(!hash, 1, "Skipping test because hash calculation failed"); + ok(memcmp(hash->data.U8, tests[i].result, 16) == 0, "hash matches"); + skip_end(); + + psFree(hash); + psFree(vector); + } + + // Images + for (int i = 0; i < NUM_TESTS; i++) { + if (strlen(tests[i].input) == 0) { + // We don't like images with size = 0,0 + continue; + } + + psImage *image = psImageAlloc(1, strlen(tests[i].input), PS_TYPE_U8); // Image to test + for (int j = 0; j < strlen(tests[i].input); j++) { + image->data.U8[j][0] = tests[i].input[j]; + } + + { + psVector *hash = psImageMD5(image); + ok(hash, "hash generated"); + + skip_start(!hash, 1, "Skipping test because hash calculation failed"); + ok(memcmp(hash->data.U8, tests[i].result, 16) == 0, "hash matches"); + skip_end(); + + psFree(hash); + } + + if (strlen(tests[i].input) > 1) { + // Generate a subImage (so the source can't assume that everything's contiguous) + psRegion region = { 0, 1, 1, image->numRows }; // Region of interest --- all but the first char + psImage *subImage = psImageSubset(image, region); + + // We're going to test against something that we calculate ourselves. Not the most robust of + // tests, but we've already verified psStringMD5, so we cross our fingers and hope. + psVector *reference = psStringMD5(tests[i].input + 1); + ok(reference, "reference hash generated"); + skip_start(!reference, 2, "Skipping tests because hash calculation failed"); + + psVector *hash = psImageMD5(subImage); + ok(hash, "hash generated"); + + skip_start(!hash, 1, "Skipping test because hash calculation failed"); + ok(memcmp(reference->data.U8, hash->data.U8, 16) == 0, "hash matches"); + skip_end(); + + psFree(hash); + + skip_end(); + + psFree(reference); + + psFree(subImage); + } + + psFree(image); + } + + done(); +} Index: /branches/rel-1-1/psLib/test/math/tap_psMathUtils.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMathUtils.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMathUtils.c (revision 12167) @@ -0,0 +1,222 @@ +/***************************************************************************** +This routine contains code which tests the general math utility functions. + +XXX: This test never really was complete. I simply converted the lates version +to libtap format. It really needs more work. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 10 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define TS00_X_F32 0x00000001 +#define TS00_X_F64 0x00000002 +#define TS00_X_NULL 0x00000004 +#define TS00_DOMAIN_F32 0x00000008 +#define TS00_DOMAIN_F64 0x00000010 +#define TS00_DOMAIN_NULL 0x00000020 +#define TS00_RANGE_F32 0x00000040 +#define TS00_RANGE_F64 0x00000080 +#define TS00_RANGE_NULL 0x00000200 +#define TOLERANCE 0.01 + +psS32 genericInterpolateTest( + psU32 flags, + psS32 order, + psS32 numData, + psF64 xValue, + psBool expectedRC) +{ + psS32 testStatus = true; + psScalar *x = NULL; + psVector *domain = NULL; + psVector *range = NULL; + psScalar *out = NULL; + + psMemId id = psMemGetId(); + if (expectedRC == false && VERBOSE) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_X_NULL) { + if (VERBOSE) + printf(" using a NULL x scalar\n"); + } + + if (flags & TS00_X_F32) { + if (VERBOSE) + printf(" using a psF32 x scalar\n"); + x = psScalarAlloc((psF32) xValue, PS_TYPE_F32); + } + + if (flags & TS00_X_F64) { + if (VERBOSE) + printf(" using a psF64 x scalar\n"); + x = psScalarAlloc((psF64) xValue, PS_TYPE_F64); + } + + if (flags & TS00_DOMAIN_NULL) { + if (VERBOSE) + printf(" using a NULL domain vector\n"); + } + + if (flags & TS00_DOMAIN_F32) { + if (VERBOSE) + printf(" using a psF32 domain vector\n"); + domain = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = (psF32) i; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_DOMAIN_F64) { + if (VERBOSE) + printf(" using a psF64 domain vector\n"); + domain = psVectorAlloc(numData, PS_TYPE_F64); + for (psS64 i=0;idata.F64[i] = (psF64) i; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_RANGE_NULL) { + if (VERBOSE) + printf(" using a NULL range vector\n"); + } + + if (flags & TS00_RANGE_F32) { + if (VERBOSE) + printf(" using a psF32 range vector\n"); + range = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = (psF32) 2*i; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_RANGE_F64) { + if (VERBOSE) + printf(" using a psF64 range vector\n"); + range = psVectorAlloc(numData, PS_TYPE_F64); + for (psS64 i=0;idata.F64[i] = (psF64) 2*i; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + out = p_psVectorInterpolate(NULL, domain, range, order, x); + if (out == NULL) { + if (expectedRC == true) { + diag("TEST ERROR: the p_psVectorInterpolate function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the p_psVectorInterpolate function returned non-NULL.\n"); + testStatus = false; + } + + if (flags & TS00_X_F32) { + if ((out->data.F32 - (2.0 * x->data.F32)) > TOLERANCE) { + diag("The interpolated value was %.2f: should be %.2f\n", out->data.F32, 2.0 * x->data.F32); + testStatus = false; + } + + } else if (flags & TS00_X_F64) { + if ((out->data.F64 - (2.0 * x->data.F64)) > TOLERANCE) { + diag("The interpolated value was %.2f: should be %.2f\n", out->data.F64, 2.0 * x->data.F64); + testStatus = false; + } + } + + /* + if (0) { + if (flags & TS00_F_F32) { + expectData = f->data.F32[i]; + } else if (flags & TS00_F_F64) { + expectData = (psF32) f->data.F64[i]; + } else if (flags & TS00_F_S32) { + expectData = (psF32) f->data.S32[i]; + } + + if (flags & TS00_X_F32) { + xData = x->data.F32[i]; + } else if (flags & TS00_X_F64) { + xData = (psF32) x->data.F64[i]; + } else if (flags & TS00_X_S32) { + xData = (psF32) x->data.S32[i]; + } else if (flags & TS00_X_NULL) { + if (flags & TS00_POLY_ORD) { + xData = (psF32) i; + } else if (flags & TS00_POLY_CHEB) { + xData = ((2.0 / ((psF32) (numData - 1))) * ((psF32) i)) - 1.0; + } + } + + psF32 actualData = psPolynomial1DEval(myPoly, xData); + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: (%.1f %.1f), expected was (%.1f)\n", + i, xData, actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f %.1f), expected was (%.1f)\n", + i, xData, actualData, expectData); + } + } + } + } + */ + } + + psFree(x); + psFree(out); + psFree(domain); + psFree(range); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + + return (testStatus); +} + +/***************************************************************************** + *****************************************************************************/ +psS32 main() +{ + psLogSetFormat("HLNM"); + plan_tests(2); + + // + // F32 tests: + // + // All Vectors non-NULL + + ok(genericInterpolateTest(TS00_X_F32 | TS00_DOMAIN_F32 | TS00_RANGE_F32, 5, NUM_DATA, 5.5, true), + "p_psVectorInterpolate() worked"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix01.c (revision 12167) @@ -0,0 +1,120 @@ +/** @file tst_psMatrix_01.c +* +* @brief Test driver for psMatrix transpose function +* +* This test driver contains the following tests: +* Create input images +* Transpose input image into output image +* Transpose input image into auto allocated NULL output image +* Free input images +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-12-20 20:02:29 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TOLERANCE 0.000001 +double truthMatrix[3][3] = {{1, 4, 7}, + {2, 5, 8}, + {3, 6, 9}}; + +bool check_matrix(psImage *img) +{ + bool errorFlag = false; + + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + +psS32 main( psS32 argc, char* argv[] ) +{ + plan_tests(10); + // Preliminary: Create input images + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 1; + inImage->data.F64[0][1] = 2; + inImage->data.F64[0][2] = 3; + inImage->data.F64[1][0] = 4; + inImage->data.F64[1][1] = 5; + inImage->data.F64[1][2] = 6; + inImage->data.F64[2][0] = 7; + inImage->data.F64[2][1] = 8; + inImage->data.F64[2][2] = 9; + psImage *inImageF32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + psImage *outImageF32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImageF32->data.F32[0][0] = 1; + inImageF32->data.F32[0][1] = 2; + inImageF32->data.F32[0][2] = 3; + inImageF32->data.F32[1][0] = 4; + inImageF32->data.F32[1][1] = 5; + inImageF32->data.F32[1][2] = 6; + inImageF32->data.F32[2][0] = 7; + inImageF32->data.F32[2][1] = 8; + inImageF32->data.F32[2][2] = 9; + + // Test A - Transpose input image into output image + { + psMemId id = psMemGetId(); + psImage *tempImage = outImage; + outImage = psMatrixTranspose(outImage, inImage); + ok(outImage->type.dimen == PS_DIMEN_IMAGE, "psMatrixTranspose(): outImage has correct number of dimensions"); + ok(outImage == tempImage, "psMatrixTranspose(): Return pointer equal to output argument pointer"); + ok(!check_matrix(outImage), "Output image data set correctly"); + + tempImage = outImageF32; + outImageF32 = psMatrixTranspose(outImageF32, inImageF32); + ok(!check_matrix(outImageF32), "Output image data set correctly"); + ok(outImageF32->type.dimen == PS_DIMEN_IMAGE, "psMatrixTranspose(): outImage has correct number of dimensions"); + ok(outImageF32 == tempImage, "psMatrixTranspose(): Return pointer equal to output argument pointer"); + + psFree(outImage); + psFree(outImageF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test B - Transpose input image into auto allocated NULL output image + { + psMemId id = psMemGetId(); + psImage *outImageNull = NULL; + outImageNull = psMatrixTranspose(outImageNull, inImage); + ok(!check_matrix(outImageNull), "Output image data set correctly"); + + psImage *outImageNullF32 = NULL; + outImageNullF32 = psMatrixTranspose(outImageNullF32, inImageF32); + check_matrix(outImageNullF32); + ok(!check_matrix(outImageNullF32), "Output image data set correctly"); + + psFree(outImageNull); + psFree(outImageNullF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(inImage); + psFree(inImageF32); +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix02.c (revision 12167) @@ -0,0 +1,93 @@ +/** @file tst_psMatrix_02.c + * + * @brief Test driver for negative tests for psMatrix transpose function + * + * This test driver contains the following tests for psMatrix test point 2: + * A) Input pointer same as output pointer + * B) Null input psImage + * C) Incorrect type for input pointer + * D) Incorrect type for output pointer + * E) Matrix not square for output pointer + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-20 20:02:29 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +psS32 main(psS32 argc, + char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(11); + + // Test A - Input pointer same as output pointer + if (0) { + psMemId id = psMemGetId(); + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + ok(psMatrixTranspose(inImage, inImage) == NULL, "psMatrixTranspose(): inImage = outImage results in NULL"); + ok(psMemGetRefCounter(inImage) == 1, "psMatrixTranspose(): the output image was freed on an error."); + psFree(inImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test B - Null input psImage + { + psMemId id = psMemGetId(); + psImage *nullImage = NULL; + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMemIncrRefCounter(outImage); + ok(psMatrixTranspose(outImage, nullImage) == NULL, "psMatrixTranspose(): inImage = NULL results in NULL return"); + ok(psMemGetRefCounter(outImage) == 1, "psMatrixTranspose(): the output image was freed on an error."); + psFree(outImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test C - Incorrect type for input pointer + { + psMemId id = psMemGetId(); + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *badImage1 = (psImage*)psImageAlloc(3, 3, PS_TYPE_C32); + psMemIncrRefCounter(outImage); + ok(psMatrixTranspose(outImage, badImage1) == NULL, "psMatrixTranspose(): inImage = outImage results in NULL return"); + ok(psMemGetRefCounter(outImage) == 1, "the output image was freed on the error."); + psFree(outImage); + psFree(badImage1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test D - Incorrect type for output pointer + { + psMemId id = psMemGetId(); + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *badImage1 = (psImage*)psImageAlloc(3, 3, PS_TYPE_C32); + badImage1 = psMatrixTranspose(badImage1, inImage); + ok(badImage1 != NULL, "psMatrixTranspose() results in non-NULL return"); + // check that the type was changed. + ok(badImage1->type.type == PS_TYPE_F64, "the output type was changed to F64"); + psFree(inImage); + psFree(badImage1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test E - Matrix not square for output pointer + // XXX: We should probably do more here. + { + psMemId id = psMemGetId(); + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *badImage2 = (psImage*)psImageAlloc(3, 2, PS_TYPE_F64); + ok(psMatrixTranspose(badImage2, inImage) != NULL, "psMatrixTranspose(): non-square matrix results in non-NULL"); + psFree(inImage); + psFree(badImage2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix03.c (revision 12167) @@ -0,0 +1,225 @@ +/** @file tst_psMatrix_03.c + * + * @brief Test driver for psMatrix LU functions + * + * This test driver contains the following tests for psMatrix test point 3: + * Create input and output images and vectors + * Calculate LU matrix + * Determine solution to matrix equation + * Free input and output images and vectors + * Attempt to use null image input argument + * Attempt to use null input vector argument + * Attempt to use null LU image argument + * + * XXX: Some tests should generate an error or warning, but we don't know how to test that. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-20 20:02:29 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TOLERANCE 0.000001 +double truthVector[3] = {4.000000, -2.000000, 3.000000}; +double truthMatrix[3][3] = {{4.000000, 5.000000, 6.000000}, + {0.750000, -2.750000, -6.500000}, + {0.500000, -0.545455, -0.545455}}; + +psS32 checkMatrix(psImage *img) +{ + bool errorFlag = false; + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + + +psS32 checkVector(psVector *vector) +{ + bool errorFlag = false; + for(psU32 i=0; in; i++) { + if(vector->type.type == PS_TYPE_F64) { + if(fabs(vector->data.F64[i]-truthVector[i]) > TOLERANCE) { + diag("Vector values at element %d don't agree %lf vs %lf\n", i, + vector->data.F64[i], truthVector[i]); + errorFlag = true; + } + } else if(vector->type.type == PS_TYPE_F32) { + if(fabs(vector->data.F32[i]-truthVector[i]) > TOLERANCE) { + diag("Vector values at element %d don't agree %f vs %lf\n", i, + vector->data.F32[i], truthVector[i]); + errorFlag = true; + } + } + } + return(errorFlag); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(16); + + // This test calculates the LU matrix and then solved the linear equations + // in F64 mode. + { + psMemId id = psMemGetId(); + psImage *luImage = (psImage*) psImageAlloc(3, 3, PS_TYPE_F64); + psImage *tempImage = luImage; + psImage *inImage = (psImage*) psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 2; + inImage->data.F64[0][1] = 4; + inImage->data.F64[0][2] = 6; + inImage->data.F64[1][0] = 4; + inImage->data.F64[1][1] = 5; + inImage->data.F64[1][2] = 6; + inImage->data.F64[2][0] = 3; + inImage->data.F64[2][1] = 1; + inImage->data.F64[2][2] = -2; + psVector *perm = (psVector*) psVectorAlloc(3, PS_TYPE_F64); + psVector *outVector = (psVector*) psVectorAlloc(3, PS_TYPE_F32); + psVector *tempVector = outVector; + psVector *inVector = (psVector*) psVectorAlloc(3, PS_TYPE_F64); + + luImage = psMatrixLUD(luImage, &perm, inImage); + ok(luImage != NULL, "psMatrixLUD() produced a non-NULL LU matrix"); + skip_start(luImage == NULL, 6, "Skipping tests because LU matrix was NULL"); + ok(!checkMatrix(luImage), "psMatrixLUD() produced the correct LU matrix"); + ok(luImage->type.dimen == PS_DIMEN_IMAGE, "The LU matrix has the correct ->dimen member"); + ok(luImage == tempImage, "The LU matrix was not created from scratch"); + + // Determine solution to matrix equation + inVector->data.F64[0] = 18.0; + inVector->data.F64[1] = 24.0; + inVector->data.F64[2] = 4.0; + inVector->n = 3; + + outVector = psMatrixLUSolve(outVector, luImage, inVector, perm); + ok(!checkVector(outVector), "psMatrixLUSolve() correctly solved the equations"); + ok(outVector->type.dimen == PS_DIMEN_VECTOR, "The output vector hasthe correct ->dimen member"); + ok(outVector == tempVector, "The output vector was not created from scratch"); + + skip_end(); + psFree(inImage); + psFree(luImage); + psFree(perm); + psFree(outVector); + psFree(inVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // This test calculates the LU matrix and then solved the linear equations + // in F32 mode. + { + psMemId id = psMemGetId(); + psImage *luImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + psImage *tempImage32 = luImage32; + psImage *inImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImage32->data.F32[0][0] = 2; + inImage32->data.F32[0][1] = 4; + inImage32->data.F32[0][2] = 6; + inImage32->data.F32[1][0] = 4; + inImage32->data.F32[1][1] = 5; + inImage32->data.F32[1][2] = 6; + inImage32->data.F32[2][0] = 3; + inImage32->data.F32[2][1] = 1; + inImage32->data.F32[2][2] = -2; + psVector *perm32 = NULL; + psVector *outVector32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + psVector *tempVector32 = outVector32; + psVector *inVector32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + inVector32->data.F32[0] = 18.0; + inVector32->data.F32[1] = 24.0; + inVector32->data.F32[2] = 4.0; + inVector32->n = 3; + + luImage32 = psMatrixLUD(luImage32, &perm32, inImage32); + ok(luImage32 != NULL, "psMatrixLUD() produced a non-NULL LU matrix"); + skip_start(luImage32 == NULL, 6, "Skipping tests because LU matrix was NULL"); + ok(!checkMatrix(luImage32), "psMatrixLUD() produced the correct LU matrix"); + ok(luImage32->type.dimen == PS_DIMEN_IMAGE, "The LU matrix has the correct ->dimen member"); + ok(luImage32 == tempImage32, "The LU matrix was not created from scratch"); + + // Determine solution to matrix equation + + outVector32 = psMatrixLUSolve(outVector32, luImage32, inVector32, perm32); + ok(!checkVector(outVector32), "psMatrixLUSolve() correctly solved the equations"); + ok(outVector32->type.dimen == PS_DIMEN_VECTOR, "The output vector hasthe correct ->dimen member"); + ok(outVector32 == tempVector32, "The output vector was not created from scratch"); + + skip_end(); + psFree(inImage32); + psFree(luImage32); + psFree(perm32); + psFree(outVector32); + psFree(inVector32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use null image input argument + // XXX: This test should generate an error or warning, but we don't know how to test that. + if (0) { + psMemId id = psMemGetId(); + psImage *imageTest = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixLUD(imageTest, NULL, NULL); + psFree(imageTest); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use null input vector argument + // XXX: This test should generate an error or warning, but we don't know how to test that. + if (0) { + psMemId id = psMemGetId(); + psVector *vectorBad = NULL; + psVector *vectorBadOut = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psVector *permBad = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psImage *imageTest = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixLUSolve(vectorBadOut, imageTest, vectorBad, permBad); + psFree(vectorBadOut); + psFree(permBad); + psFree(imageTest); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use null LU image argument + // XXX: This test should generate an error or warning, but we don't know how to test that. + if (0) { + psMemId id = psMemGetId(); + psVector *vectorBadOut = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psVector *vectorBad = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psVector *permBad = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psMatrixLUSolve(vectorBadOut, NULL, vectorBad, permBad); + psFree(vectorBadOut); + psFree(vectorBad); + psFree(permBad); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix04.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix04.c (revision 12167) @@ -0,0 +1,170 @@ +/** @file tst_psMatrix_04.c + * + * @brief Test driver for psMatrix invert function + * + * This test driver contains the following tests for psMatrix test point 4: + * Create input and output images + * Invert matrix and calculate determinant + * Calculate determinant only + * Free input and output images + * Attempt to use null input image argument + * Attempt to use null input float argument + * + * Sme tests should generate an error/warning, but we don't know how to test that. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-20 20:02:29 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define TOLERANCE 0.000001 +double truthMatrix[3][3] = {{4.0000000, -4.333333, -2.333333}, + {-1.000000, 1.666667, 0.666667}, + {-1.000000, 0.666667, 0.666667}}; +double truthValue = 3.0; + +psS32 checkMatrix(psImage *img) +{ + bool errorFlag = false; + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + +psS32 checkValue(psF64 value) +{ + if(fabs(value-truthValue) > TOLERANCE) { + diag("Values don't agree %lf vs %lf\n", value, truthValue); + return(true); + } else { + return(false); + } +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(14); + + // Invert matrix and calculate determinant: F64 + { + psMemId id = psMemGetId(); + float det = 0.0f; + float det2 = 0; + psImage *tempImage = NULL; + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 2; + inImage->data.F64[0][1] = 4; + inImage->data.F64[0][2] = 3; + inImage->data.F64[1][0] = 0; + inImage->data.F64[1][1] = 1; + inImage->data.F64[1][2] = -1; + inImage->data.F64[2][0] = 3; + inImage->data.F64[2][1] = 5; + inImage->data.F64[2][2] = 7; + + tempImage = outImage; + outImage = psMatrixInvert(outImage, inImage, &det); + ok(outImage != NULL, "psMatrixInvert() produced a non-NULL matrix"); + skip_start(outImage == NULL, 4, "Skipping tests because the output matrix is NULL"); + ok(!checkMatrix(outImage), "psMatrixInvert() produced the correct output matrix"); + ok(!checkValue(det), "psMatrixInvert() produced the correct determinant"); + ok(outImage->type.dimen == PS_DIMEN_IMAGE, "psMatrixInvert() produced the correct ->dimen member"); + ok(outImage == tempImage, "psMatrixInvert() did not allocate a new output matrix"); + det = 0.0f; + + det2 = psMatrixDeterminant(inImage); + ok(!checkValue(det2), "psMatrixDeterminant() produced the correct determinant"); + + skip_end() + psFree(outImage); + psFree(inImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Invert matrix and calculate determinant: F32 + { + psMemId id = psMemGetId(); + float det = 0.0f; + float det2 = 0; + psImage *tempImage32 = NULL; + psImage *outImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + psImage *inImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImage32->data.F32[0][0] = 2; + inImage32->data.F32[0][1] = 4; + inImage32->data.F32[0][2] = 3; + inImage32->data.F32[1][0] = 0; + inImage32->data.F32[1][1] = 1; + inImage32->data.F32[1][2] = -1; + inImage32->data.F32[2][0] = 3; + inImage32->data.F32[2][1] = 5; + inImage32->data.F32[2][2] = 7; + + tempImage32 = outImage32; + outImage32 = psMatrixInvert(outImage32, inImage32, &det); + ok(outImage32 != NULL, "psMatrixInvert() produced a non-NULL matrix"); + skip_start(outImage32 == NULL, 4, "Skipping tests because the output matrix is NULL"); + ok(!checkMatrix(outImage32), "psMatrixInvert() produced the correct output matrix"); + ok(!checkValue(det), "psMatrixInvert() produced the correct determinant"); + ok(outImage32->type.dimen == PS_DIMEN_IMAGE, "psMatrixInvert() produced the correct ->dimen member"); + ok(outImage32 == tempImage32, "psMatrixInvert() did not allocate a new output matrix"); + + det2 = psMatrixDeterminant(inImage32); + ok(!checkValue(det2), "psMatrixDeterminant() produced the correct determinant"); + + skip_end() + psFree(outImage32); + psFree(inImage32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use null input image argument + // XXX: This should generate an error/warning, but we don't know how to test that. + if (0) { + psMemId id = psMemGetId(); + float det = 0.0f; + psImage *badOutImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixInvert(badOutImage, NULL, &det); + psFree(badOutImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use null input float argument + // XXX: This should generate an error/warning, but we don't know how to test that. + if (0) { + psMemId id = psMemGetId(); + psImage *badInImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *badOutImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixInvert(badOutImage, badInImage, NULL); + psFree(badInImage); + psFree(badOutImage); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix05.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix05.c (revision 12167) @@ -0,0 +1,120 @@ +/** @file tst_psMatrix_05.c +* +* @brief Test driver for psMatrix multiplication function +* +* This test driver contains the following tests for psMatrix test point 5: +* A) Create input and output images +* B) Multiply images +* C) Free input and output images +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-12-20 20:02:29 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define TOLERANCE 0.000001 +double truthMatrix[3][3] = {{ 0.0, 52.0}, + {-14.0, 51.0}}; + +psS32 checkMatrix(psImage *img) +{ + bool errorFlag = false; + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + +psS32 main(psS32 argc, + char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(6); + + // Create input and output images, then multiple: F64 version + { + psMemId id = psMemGetId(); + psImage * outImage = (psImage*) psImageAlloc(2, 2, PS_TYPE_F64); + psImage *inImage1 = (psImage*) psImageAlloc(3, 2, PS_TYPE_F64); + psImage *inImage2 = (psImage*) psImageAlloc(2, 3, PS_TYPE_F64); + inImage1->data.F64[0][0] = 2; + inImage1->data.F64[0][1] = 3; + inImage1->data.F64[0][2] = 4; + inImage1->data.F64[1][0] = -1; + inImage1->data.F64[1][1] = 2; + inImage1->data.F64[1][2] = 5; + inImage2->data.F64[0][0] = 4; + inImage2->data.F64[0][1] = 1; + inImage2->data.F64[1][0] = 0; + inImage2->data.F64[1][1] = 6; + inImage2->data.F64[2][0] = -2; + inImage2->data.F64[2][1] = 8; + + // Test B - Multiply images + psMatrixMultiply(outImage, inImage1, inImage2); + ok(outImage != NULL, "psMatrixMultiply() produced a non-NULL output matrix"); + ok(!checkMatrix(outImage), "psMatrixMultiply() produced the correct output matrix"); + + // Test C - Free input and output images + psFree(outImage); + psFree(inImage1); + psFree(inImage2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Create input and output images, then multiple: F32 version + { + psMemId id = psMemGetId(); + psImage * outImage32 = NULL; + psImage *inImage132 = NULL; + psImage *inImage232 = NULL; + outImage32 = (psImage*)psImageAlloc(2, 2, PS_TYPE_F32); + inImage132 = (psImage*)psImageAlloc(3, 2, PS_TYPE_F32); + inImage232 = (psImage*)psImageAlloc(2, 3, PS_TYPE_F32); + inImage132->data.F32[0][0] = 2; + inImage132->data.F32[0][1] = 3; + inImage132->data.F32[0][2] = 4; + inImage132->data.F32[1][0] = -1; + inImage132->data.F32[1][1] = 2; + inImage132->data.F32[1][2] = 5; + inImage232->data.F32[0][0] = 4; + inImage232->data.F32[0][1] = 1; + inImage232->data.F32[1][0] = 0; + inImage232->data.F32[1][1] = 6; + inImage232->data.F32[2][0] = -2; + inImage232->data.F32[2][1] = 8; + + // Test B - Multiply images + psMatrixMultiply(outImage32, inImage132, inImage232); + ok(outImage32 != NULL, "psMatrixMultiply() produced a non-NULL output matrix"); + ok(!checkMatrix(outImage32), "psMatrixMultiply() produced the correct output matrix"); + + // Test C - Free input and output images + psFree(outImage32); + psFree(inImage132); + psFree(inImage232); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix06.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix06.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix06.c (revision 12167) @@ -0,0 +1,124 @@ +/** @file tst_psMatrix_06.c +* +* @brief Test driver for psMatrix Eigenvectors function +* +* This test driver contains the following tests for psMatrix test point 6: +* A) Create input and output images +* B) Calculate Eigenvectors +* C) Free input and output images +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-12-20 20:02:29 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define TOLERANCE 0.000001 +double truthMatrix[4][4] = {{0.792608, 0.582076, -0.179186, -0.029193}, + {0.451923, -0.370502, 0.741918, 0.328712}, + {0.322416, -0.509579, -0.100228, -0.791411}, + {0.252161, -0.514048, -0.638283, 0.514553}}; + + +psS32 checkMatrix(psImage *img) +{ + bool errorFlag = false; + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(6); + + // Create input and output images, then produce Eigen vectors: F64 version + { + psMemId id = psMemGetId(); + psImage * outImage = (psImage*) psImageAlloc(4, 4, PS_TYPE_F64); + psImage *inImage = (psImage*) psImageAlloc(4, 4, PS_TYPE_F64); + inImage->data.F64[0][0] = 1./1.; + inImage->data.F64[0][1] = 1./2.; + inImage->data.F64[0][2] = 1./3.; + inImage->data.F64[0][3] = 1./4.; + inImage->data.F64[1][0] = 1./2.; + inImage->data.F64[1][1] = 1./3.; + inImage->data.F64[1][2] = 1./4.; + inImage->data.F64[1][3] = 1./5.; + inImage->data.F64[2][0] = 1./3.; + inImage->data.F64[2][1] = 1./4.; + inImage->data.F64[2][2] = 1./5.; + inImage->data.F64[2][3] = 1./6.; + inImage->data.F64[3][0] = 1./4.; + inImage->data.F64[3][1] = 1./5.; + inImage->data.F64[3][2] = 1./6.; + inImage->data.F64[3][3] = 1./7.; + + psMatrixEigenvectors(outImage, inImage); + ok(outImage != NULL, "psMatrixEigenvectors() produced a NULL output Matrix"); + skip_start(outImage == NULL, 1, "Skipping tests because output matrix was NULL"); + ok(!checkMatrix(outImage), "psMatrixEigenvectors() produced the correct Matrix"); + psFree(outImage); + psFree(inImage); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Create input and output images, then produce Eigen vectors: F32 version + { + psMemId id = psMemGetId(); + psImage * outImage32 = (psImage*) psImageAlloc(4, 4, PS_TYPE_F32); + psImage *inImage32 = (psImage*) psImageAlloc(4, 4, PS_TYPE_F32); + inImage32->data.F32[0][0] = 1./1.; + inImage32->data.F32[0][1] = 1./2.; + inImage32->data.F32[0][2] = 1./3.; + inImage32->data.F32[0][3] = 1./4.; + inImage32->data.F32[1][0] = 1./2.; + inImage32->data.F32[1][1] = 1./3.; + inImage32->data.F32[1][2] = 1./4.; + inImage32->data.F32[1][3] = 1./5.; + inImage32->data.F32[2][0] = 1./3.; + inImage32->data.F32[2][1] = 1./4.; + inImage32->data.F32[2][2] = 1./5.; + inImage32->data.F32[2][3] = 1./6.; + inImage32->data.F32[3][0] = 1./4.; + inImage32->data.F32[3][1] = 1./5.; + inImage32->data.F32[3][2] = 1./6.; + inImage32->data.F32[3][3] = 1./7.; + + psMatrixEigenvectors(outImage32, inImage32); + ok(outImage32 != NULL, "psMatrixEigenvectors() produced a NULL output Matrix"); + skip_start(outImage32 == NULL, 1, "Skipping tests because output matrix was NULL"); + ok(!checkMatrix(outImage32), "psMatrixEigenvectors() produced the correct Matrix"); + psFree(outImage32); + psFree(inImage32); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrix07.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrix07.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrix07.c (revision 12167) @@ -0,0 +1,340 @@ +/** @file tst_psMatrix_07.c + * + * @brief Test driver for psMatrix vector conversion functions + * + * This test driver contains the following tests for psMatrix test point 7: + * Create input and output images and vectors + * Convert matrix to PS_DIMEN_VECTOR vector + * Attempt to use null image input argument + * Convert matrix to PS_DIMEN_TRANSV vector + * XXX: Improper image size (NOT TESTED) + * Convert PS_DIMEN_VECTOR vector to matrix + * XXX: Attempt to use null input vector argument (NOT TESTED) + * Convert PS_DIMEN_TRANSV vector to matrix + * Free input and output images and vectors + * + * XXX: This should produce an error; how can we test it? + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 22:50:18 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define TOLERANCE 0.000001 +psF64 truthVector[3] = {0.0, 1.0, 2.0}; +psF32 truthVector_32[3] = {0.0, 1.0, 2.0}; +psF64 truthMatrix[3][1] = {{0.0}, {1.0}, {2.0}}; +psF32 truthMatrix_32[3][1] = {{0.0}, {1.0}, {2.0}}; + +psS32 checkMatrix(psImage *img) +{ + bool errorFlag = false; + for(psU32 i=0; inumRows; i++) { + for(psU32 j=0; jnumCols; j++) { + if(img->type.type == PS_TYPE_F64) { + if(fabs(img->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, + img->data.F64[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } else if(img->type.type == PS_TYPE_F32) { + if(fabs(img->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { + diag("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, + img->data.F32[i][j], truthMatrix[i][j]); + errorFlag = true; + } + } + } + } + return(errorFlag); +} + +psS32 checkVector(psVector *vector) +{ + bool errorFlag = false; + for(psU32 i=0; in; i++) { + if(vector->type.type == PS_TYPE_F64) { + if(fabs(vector->data.F64[i]-truthVector[i]) > TOLERANCE) { + diag("Vector values at element %d don't agree %lf vs %lf\n", i, + vector->data.F64[i], truthVector[i]); + errorFlag = true; + } + } else if(vector->type.type == PS_TYPE_F32) { + if(fabs(vector->data.F32[i]-truthVector[i]) > TOLERANCE) { + diag("Vector values at element %d don't agree %f vs %lf\n", i, + vector->data.F32[i], truthVector[i]); + errorFlag = true; + } + } + } + return(errorFlag); +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(44); + + // Convert matrix to PS_DIMEN_VECTOR vector: F64 version + { + psMemId id = psMemGetId(); + psVector *v1 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psImage *m1 = (psImage*)psImageAlloc(1, 3, PS_TYPE_F64); + m1->data.F64[0][0] = 0.0; + m1->data.F64[1][0] = 1.0; + m1->data.F64[2][0] = 2.0; + psVector *tempVector = v1; + + v1 = psMatrixToVector(v1, m1); + ok(v1 != NULL, "psMatrixToVector() produced a non-NULL vector"); + skip_start(v1 == NULL, 3, "Skipping tests because vector was NULL"); + ok(!checkVector(v1), "psMatrixToVector() produced the correct vector"); + ok(v1->type.dimen == PS_DIMEN_VECTOR, "psMatrixToVector() produced the correct ->dimen member"); + ok(v1 == tempVector, "psMatrixToVector() did not allocate a new output vector"); + + skip_end(); + psFree(m1); + psFree(v1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert matrix to PS_DIMEN_VECTOR vector: F32 version + { + psMemId id = psMemGetId(); + psVector *v1_32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + psImage *m1_32 = (psImage*)psImageAlloc(1,3,PS_TYPE_F32); + m1_32->data.F32[0][0] = 0.0; + m1_32->data.F32[1][0] = 1.0; + m1_32->data.F32[2][0] = 2.0; + psVector *tempVector_32 = v1_32; + + v1_32 = psMatrixToVector(v1_32, m1_32); + ok(v1_32 != NULL, "psMatrixToVector() produced a non-NULL vector"); + skip_start(v1_32 == NULL, 3, "Skipping tests because vector was NULL"); + ok(!checkVector(v1_32), "psMatrixToVector() produced the correct vector"); + ok(v1_32->type.dimen == PS_DIMEN_VECTOR, "psMatrixToVector() produced the correct ->dimen member"); + ok(v1_32 == tempVector_32, "psMatrixToVector() did not allocate a new output vector"); + + skip_end(); + psFree(m1_32); + psFree(v1_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to use null image input argument: F64 version + { + psMemId id = psMemGetId(); + psVector *v1 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + v1 = psMatrixToVector(v1, NULL); + ok(v1 == NULL, "psMatrixToVector() returned NULL with NULL matrix argument"); + psFree(v1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to use null image input argument: F32 version + { + psMemId id = psMemGetId(); + psVector *v1_32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + v1_32 = psMatrixToVector(v1_32, NULL); + ok(v1_32 == NULL, "psMatrixToVector() returned NULL with NULL matrix argument"); + psFree(v1_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert matrix to PS_DIMEN_TRANSV vector: F64 version + { + psMemId id = psMemGetId(); + psImage *m4 = (psImage*)psImageAlloc(3, 1, PS_TYPE_F64); + m4->data.F64[0][0] = 0.0; + m4->data.F64[0][1] = 1.0; + m4->data.F64[0][2] = 2.0; + psVector *v3 = psVectorAlloc(3, PS_TYPE_F64); + psVector *tempVector = v3; + + v3->type.dimen = PS_DIMEN_TRANSV; + psMatrixToVector(v3, m4); + ok(v3 != NULL, "psMatrixToVector() produced non-NULL output VECTOR"); + skip_start(v3 == NULL, 3, "Skipping tests because of non-NULL output VECTOR"); + ok(!checkVector(v3), "psMatrixToVector() produced the correct vector"); + ok(v3->type.dimen == PS_DIMEN_TRANSV, "psMatrixToVector() produced the correct ->dimen member"); + ok(v3 == tempVector, "psMatrixToVector() did not allocate a new output vector"); + + skip_end(); + psFree(m4); + psFree(v3); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert matrix to PS_DIMEN_TRANSV vector: F32 version + { + psMemId id = psMemGetId(); + psImage *m4_32 = m4_32 = (psImage*)psImageAlloc(3,1,PS_TYPE_F32); + m4_32->data.F32[0][0] = 0.0; + m4_32->data.F32[0][1] = 1.0; + m4_32->data.F32[0][2] = 2.0; + psVector *v3_32 = psVectorAlloc(3, PS_TYPE_F32); + psVector *tempVector_32 = v3_32; + + v3_32->type.dimen = PS_DIMEN_TRANSV; + psMatrixToVector(v3_32, m4_32); + ok(v3_32 != NULL, "psMatrixToVector() produced non-NULL output VECTOR"); + skip_start(v3_32 == NULL, 3, "Skipping tests because of non-NULL output VECTOR"); + ok(!checkVector(v3_32), "psMatrixToVector() produced the correct vector"); + ok(v3_32->type.dimen == PS_DIMEN_TRANSV, "psMatrixToVector() produced the correct ->dimen member"); + ok(v3_32 == tempVector_32, "psMatrixToVector() did not allocate a new output vector"); + + skip_end(); + psFree(m4_32); + psFree(v3_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Improper image size: F64 version + // XXX: This should produce an error; how can we test it? + if (0) { + psMemId id = psMemGetId(); + psImage *badImage = (psImage*)psImageAlloc(2, 2, PS_TYPE_F64); + psVector *v1 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + ok(psMatrixToVector(v1, badImage) == NULL, "psMatrixToVector() returned NULL with improper sizes"); + psFree(badImage); + psFree(v1); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Improper image size: F32 version + // XXX: This should produce an error; how can we test it? + if (0) { + psMemId id = psMemGetId(); + psImage *badImage_32 = (psImage*)psImageAlloc(2,2,PS_TYPE_F32); + psVector *v1_32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + ok(psMatrixToVector(v1_32, badImage_32) == NULL, "psMatrixToVector() returned NULL with improper sizes"); + psFree(badImage_32); + psFree(v1_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert PS_DIMEN_VECTOR vector to matrix: F64 version + { + psMemId id = psMemGetId(); + psImage *m2 = (psImage*)psImageAlloc(1, 3, PS_TYPE_F64); + psVector *v2 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + v2->data.F64[0] = 0.0; + v2->data.F64[1] = 1.0; + v2->data.F64[2] = 2.0; + v2->n = 3; + + psImage *tempImage = m2; + m2 = psVectorToMatrix(m2, v2); + ok(m2 != NULL, "psVectorToMatrix() produced non-NULL output matrix"); + skip_start(m2 == NULL, 3, "Skipping tests because of non-NULL output matrix"); + ok(!checkMatrix(m2), "psVectorToMatrix() produced the correct vector"); + ok(m2->type.dimen == PS_DIMEN_IMAGE, "psVectorToMatrix() produced the correct ->dimen member"); + ok(m2 == tempImage, "psVectorToMatrix() did not allocate a new output matrix"); + + skip_end(); + psFree(m2); + psFree(v2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert PS_DIMEN_VECTOR vector to matrix: F32 version + { + psMemId id = psMemGetId(); + psImage *m2_32 = (psImage*)psImageAlloc(1,3,PS_TYPE_F32); + psVector *v2_32 = (psVector*)psVectorAlloc(3,PS_TYPE_F32); + v2_32->data.F32[0] = 0.0; + v2_32->data.F32[1] = 1.0; + v2_32->data.F32[2] = 2.0; + v2_32->n = 3; + + psImage *tempImage_32 = m2_32; + m2_32 = psVectorToMatrix(m2_32, v2_32); + ok(m2_32 != NULL, "psVectorToMatrix() produced non-NULL output matrix"); + skip_start(m2_32 == NULL, 3, "Skipping tests because of non-NULL output matrix"); + ok(!checkMatrix(m2_32), "psVectorToMatrix() produced the correct vector"); + ok(m2_32->type.dimen == PS_DIMEN_IMAGE, "psVectorToMatrix() produced the correct ->dimen member"); + ok(m2_32 == tempImage_32, "psVectorToMatrix() did not allocate a new output matrix"); + + skip_end(); + psFree(m2_32); + psFree(v2_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to use null input vector argument: F64 version + // XXX: This should produce an error; how can we test it? + if (0) { + psMemId id = psMemGetId(); + psImage *m2 = (psImage*)psImageAlloc(1, 3, PS_TYPE_F64); + ok(psVectorToMatrix(m2, NULL) == NULL, "psVectorToMatrix() returned NULL with NULL input vector"); + psFree(m2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to use null input vector argument: F32 version + // XXX: This should produce an error; how can we test it? + if (0) { + psMemId id = psMemGetId(); + psImage *m2_32 = (psImage*)psImageAlloc(1,3,PS_TYPE_F32); + ok(psVectorToMatrix(m2_32, NULL) == NULL, "psVectorToMatrix() returned NULL with NULL input vector"); + psFree(m2_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert PS_DIMEN_TRANSV vector to matrix: F64 version + { + psMemId id = psMemGetId(); + psVector *v2 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + v2->data.F64[0] = 0.0; + v2->data.F64[1] = 1.0; + v2->data.F64[2] = 2.0; + v2->n = 3; + v2->type.dimen = PS_DIMEN_TRANSV; + psImage *m3 = (psImage*)psImageAlloc(3, 1, PS_TYPE_F64); + psImage *tempImage = m3; + + psVectorToMatrix(m3, v2); + ok(m3 != NULL, "psVectorToMatrix() produced non-NULL output matrix"); + skip_start(m3 == NULL, 3, "Skipping tests because of non-NULL output matrix"); + ok(!checkMatrix(m3), "psVectorToMatrix() produced the correct vector"); + ok(m3->type.dimen == PS_DIMEN_IMAGE, "psVectorToMatrix() produced the correct ->dimen member"); + ok(m3 == tempImage, "psVectorToMatrix() did not allocate a new output matrix"); + + skip_end(); + psFree(v2); + psFree(m3); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Convert PS_DIMEN_TRANSV vector to matrix: F32 version + { + psMemId id = psMemGetId(); + psVector *v2_32 = (psVector*)psVectorAlloc(3,PS_TYPE_F32); + v2_32->data.F32[0] = 0.0; + v2_32->data.F32[1] = 1.0; + v2_32->data.F32[2] = 2.0; + v2_32->n = 3; + v2_32->type.dimen = PS_DIMEN_TRANSV; + psImage *m3_32 = (psImage*)psImageAlloc(3,1,PS_TYPE_F32); + psImage *tempImage_32 = m3_32; + + psVectorToMatrix(m3_32, v2_32); + ok(m3_32 != NULL, "psVectorToMatrix() produced non-NULL output matrix"); + skip_start(m3_32 == NULL, 3, "Skipping tests because of non-NULL output matrix"); + ok(!checkMatrix(m3_32), "psVectorToMatrix() produced the correct vector"); + ok(m3_32->type.dimen == PS_DIMEN_IMAGE, "psVectorToMatrix() produced the correct ->dimen member"); + ok(m3_32 == tempImage_32, "psVectorToMatrix() did not allocate a new output matrix"); + + skip_end(); + psFree(v2_32); + psFree(m3_32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic01.c (revision 12167) @@ -0,0 +1,274 @@ +/** @file tst_psMatrixVectorArithmetic01.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver tests combinations of matrix, vector, and scalar binary operations including: + * Matrix-matrix with +,-,*,/ with S32, F32, F64, C32 + * Matrix-vector with +,-,*,/ with S32, F32, F64, C32 + * Matrix-scalar with +,-,*,/ with S32, F32, F64, C32 + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-30 00:11:31 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define VERBOSE 1 + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +{ \ + ps##TYPE tmpScalar = VALUE; \ + for(psS32 i=0; idata.TYPE[i] = tmpScalar; \ + tmpScalar+= (ps##TYPE) 1; \ + } \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE);\ +{ \ + ps##TYPE tmpScalar = VALUE; \ + for (psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = tmpScalar; \ + tmpScalar+= (ps##TYPE) 1; \ + } \ + } \ +} + +#define testBinaryOpMM(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS,ERRORFLAG,MEMORYFLAG) \ +{ \ + psMemId id = psMemGetId(); \ + ERRORFLAG = false; \ + MEMORYFLAG = false; \ + CREATE_AND_SET_IMAGE(in1,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_IMAGE(in2,TYPE,VALUE2,NROWS,NCOLS); \ + psImage *out = (psImage*)psBinaryOp(NULL, in1, #OP, in2); \ + for (psS32 i = 0 ; i < NROWS ; i++) { \ + for (psS32 j = 0 ; j < NCOLS ; j++) { \ + ps##TYPE expect = in1->data.TYPE[i][j] OP in2->data.TYPE[i][j]; \ + if (fabs((psF32) (out->data.TYPE[i][j] - expect)) > 0.1) { \ + errorFlag = true; \ + if (VERBOSE) { \ + printf("TEST ERROR: outImage[%d][%d] is %f, should be %f\n", i, j, (psF32) out->data.TYPE[i][j], (psF32) expect); \ + } \ + } \ + } \ + } \ + psFree(in1); \ + psFree(in2); \ + psFree(out); \ + MEMORYFLAG = psMemCheckLeaks(id, NULL, NULL, false); \ +} + +#define testBinaryOpMV(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS,ERRORFLAG,MEMORYFLAG) \ +{ \ + psMemId id = psMemGetId(); \ + ERRORFLAG = false; \ + MEMORYFLAG = false; \ + CREATE_AND_SET_IMAGE(in,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_VECTOR(inVector,TYPE,VALUE2,NROWS); \ + psImage *out = (psImage*)psBinaryOp(NULL, in, #OP, inVector); \ + for (psS32 i = 0 ; i < NROWS ; i++) { \ + for (psS32 j = 0 ; j < NCOLS ; j++) { \ + ps##TYPE expect = in->data.TYPE[i][j] OP inVector->data.TYPE[i]; \ + if (fabs((psF32) (out->data.TYPE[i][j] - expect)) > 0.1) { \ + errorFlag = true; \ + if (VERBOSE) { \ + printf("TEST ERROR: outImage[%d][%d] is %f, should be %f\n", i, j, (psF32) out->data.TYPE[i][j], (psF32) expect); \ + } \ + } \ + } \ + } \ + psFree(in); \ + psFree(inVector); \ + psFree(out); \ + MEMORYFLAG = psMemCheckLeaks(id, NULL, NULL, false); \ +} + +#define testBinaryOpMS(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS,ERRORFLAG,MEMORYFLAG) \ +{ \ + psMemId id = psMemGetId(); \ + ERRORFLAG = false; \ + MEMORYFLAG = false; \ + CREATE_AND_SET_IMAGE(in,TYPE,VALUE1,NROWS,NCOLS); \ + psScalar *inScalar = (psScalar*)psScalarAlloc(VALUE2,PS_TYPE_##TYPE); \ + psImage *out = (psImage*)psBinaryOp(NULL, in, #OP, psScalarCopy(inScalar));\ + for (psS32 i = 0 ; i < NROWS ; i++) { \ + for (psS32 j = 0 ; j < NCOLS ; j++) { \ + ps##TYPE expect = in->data.TYPE[i][j] OP inScalar->data.TYPE; \ + if (fabs((psF32) (out->data.TYPE[i][j] - expect)) > 0.1) { \ + errorFlag = true; \ + if (VERBOSE) { \ + printf("TEST ERROR: outImage[%d][%d] is %f, should be %f\n", i, j, (psF32) out->data.TYPE[i][j], (psF32) expect); \ + } \ + } \ + } \ + } \ + psFree(inScalar); \ + psFree(in); \ + psFree(out); \ + MEMORYFLAG = psMemCheckLeaks(id, NULL, NULL, false); \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + bool errorFlag = false; + bool memoryFlag = false; + plan_tests(90); + + //Test matrix-matrix binary operations + testBinaryOpMM(+,S32,10,20,5,4,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, +, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(+,F32,10.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, +, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(+,F64,10.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, +, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(+,C32,10.0+10.0i,10.0+10.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, +, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(-,S32,20,10,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, -, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(-,F32,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, -, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(-,F64,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, -, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(*,S32,20,10,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, *, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(*,F32,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, *, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(*,F64,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, *, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(*,C32,20.0+20.0i,10.0+10.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, *, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(/,S32,20,10,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, /, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(/,F32,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, /, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(/,F64,20.0,10.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, /, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMM(/,C32,20.0+20.0i,10.0+10.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-matrix, /, C32)"); + ok(memoryFlag== false, "no memory leaks"); + + // Test Matrix-Vector binary operations + testBinaryOpMV(+,S32,10,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, +, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(+,F32,10.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, +, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(+,F64,10.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, +, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(+,C32,10.0+10.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, +, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(-,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, -, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(-,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, -, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(-,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, -, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(*,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, *, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(*,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, *, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(*,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, *, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(*,C32,20.0+20.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, *, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(/,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, /, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(/,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, /, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(/,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, /, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMV(/,C32,20.0+20.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-vector, /, C32)"); + ok(memoryFlag== false, "no memory leaks"); + + // Test Matrix-Scalar binary operations + testBinaryOpMS(+,S32,10,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, +, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(+,F32,10.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, +, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(+,F64,10.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, +, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(+,C32,10.0+10.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, +, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(-,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, -, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(-,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, -, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(-,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, -, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(*,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, *, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(*,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, *, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(*,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, *, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(*,C32,20.0+20.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, *, C32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(/,S32,20,5,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, /, S32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(/,F32,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, /, F32)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(/,F64,20.0,5.0,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, /, F64)"); + ok(memoryFlag== false, "no memory leaks"); + testBinaryOpMS(/,C32,20.0+20.0i,5.0+5.0i,3,2,errorFlag,memoryFlag); + ok(errorFlag== false, "psBinaryOp(): was successful: (matrix-scalar, /, C32)"); + ok(memoryFlag== false, "no memory leaks"); + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic02.c (revision 12167) @@ -0,0 +1,547 @@ + +/** @file tst_psMatrixVectorArithmetic02.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver tests combinations of matrix, vector, and scalar unary operations including: + * Matrix with all math operators with S32, F32, F64, C32 + * Vector with all math operators with S32, F32, F64, C32 + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-06 00:48:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define CHECK_VECTOR(VECTOR,TYPE,TRUTH,ERRORFLAG) \ +{ \ + for(psS32 i=0; in; i++) { \ + if(cabs(VECTOR->data.TYPE[i])-cabs(TRUTH) > FLT_EPSILON){ \ + ERRORFLAG = true; \ + diag("ERROR:Truth and calculated values don't match for vector operation:\n"); \ + if(PS_IS_PSELEMTYPE_COMPLEX(VECTOR->type.type)) { \ + diag("Truth: %.2f%+.2fi\n", creal(VECTOR->data.TYPE[i]), cimag(VECTOR->data.TYPE[i])); \ + diag("Calculated: %.2f%+.2fi\n", creal(TRUTH), cimag(TRUTH)); \ + } else if(PS_IS_PSELEMTYPE_INT(VECTOR->type.type)) { \ + diag("Truth: %d\n", (psS32)(VECTOR->data.TYPE[i])); \ + diag("Calculated: %d\n", (psS32)(TRUTH)); \ + } else { \ + diag("Truth: %.2f\n", (double)(VECTOR->data.TYPE[i])); \ + diag("Calculated: %.2f\n", (double)(TRUTH)); \ + } \ + diag("\n"); \ + } \ + } \ +} + +#define CHECK_MATRIX(IMAGE,TYPE,TRUTH,ERRORFLAG) \ +{ \ + for(psS32 i=IMAGE->numRows-1; i>-1; i--) { \ + for(psS32 j=0; jnumCols; j++) { \ + if(cabs(IMAGE->data.TYPE[i][j])-cabs(TRUTH) > FLT_EPSILON){ \ + ERRORFLAG = true; \ + diag("ERROR:Truth and calculated values don't match for matrix operation:\n"); \ + if(PS_IS_PSELEMTYPE_COMPLEX(IMAGE->type.type)) { \ + diag("Truth: %.2f%+.2fi\n", creal(IMAGE->data.TYPE[i][j]), cimag(IMAGE->data.TYPE[i][j])); \ + diag("Calculated: %.2f%+.2fi\n", creal(TRUTH), cimag(TRUTH)); \ + } else if(PS_IS_PSELEMTYPE_INT(IMAGE->type.type)) { \ + diag("Truth: %d\n", (psS32)(IMAGE->data.TYPE[i][j])); \ + diag("Calculated: %d\n", (psS32)(TRUTH)); \ + } else { \ + diag("Truth: %.2f\n", (double)(IMAGE->data.TYPE[i][j])); \ + diag("Calculated: %.2f\n", (double)(TRUTH)); \ + } \ + diag("\n"); \ + diag("\n"); \ + } \ + } \ + } \ +} + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +#define CHECK_MEMORY \ +if( psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { \ + psError(PS_ERR_UNKNOWN, true,"Memory leaks detected."); \ + return 50; \ +} \ +psS32 nBad = psMemCheckCorruption(0); \ +if(nBad) { \ + psError(PS_ERR_UNKNOWN, true,"ERROR: Found %d bad memory blocks\n", nBad); \ + return 51; \ +} + +// Test matrix unary operations +#define testUnaryOpM(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS,TRUTH,ERRORFLAG,MEMORYFLAG) \ +{ \ + psMemId id = psMemGetId(); \ + ERRORFLAG = false; \ + MEMORYFLAG = false; \ + CREATE_AND_SET_IMAGE(inImage,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_IMAGE(outImage,TYPE,VALUE2,NROWS,NCOLS); \ + outImage = (psImage*)psUnaryOp(outImage, inImage, #OP); \ + CHECK_MATRIX(outImage,TYPE,TRUTH,ERRORFLAG); \ + psFree(inImage); \ + psFree(outImage); \ + MEMORYFLAG = psMemCheckLeaks(id, NULL, NULL, false); \ +} + +// Test vector unary operations +#define testUnaryOpV(OP,TYPE,VALUE1,VALUE2,SIZE,TRUTH,ERRORFLAG,MEMORYFLAG) \ +{ \ + psMemId id = psMemGetId(); \ + ERRORFLAG = false; \ + MEMORYFLAG = false; \ + CREATE_AND_SET_VECTOR(inVector,TYPE,VALUE1,SIZE); \ + CREATE_AND_SET_VECTOR(outVector,TYPE,VALUE2,SIZE); \ + outVector = (psVector*)psUnaryOp(outVector, inVector, #OP); \ + CHECK_VECTOR(outVector,TYPE,TRUTH,ERRORFLAG); \ + psFree(inVector); \ + psFree(outVector); \ + MEMORYFLAG = psMemCheckLeaks (id, NULL, NULL, false); \ +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + plan_tests(272); + bool errorFlag = false; + bool memoryFlag = false; + + testUnaryOpM( abs, S32, -10, 0, 3, 2, 10, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( abs, F32, -10.0, 0.0, 3, 2, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( abs, F64, -10.0, 0.0, 3, 2, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( abs, C32, -10.0 - 10.0i, 0.0 + 0.0i, 3, 2,10+10i, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( exp, S32, 10, 0, 3, 2, exp(10), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( exp, F32, 10.0, 0.0, 3, 2, cexp(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( exp, F64, 10.0, 0.0, 3, 2, cexp(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( exp, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, cexp(1.0+1.0i), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ln, S32, 10, 0, 3, 2, clog(10), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ln, F32, 10.0, 0.0, 3, 2, clog(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ln, F64, 10.0, 0.0, 3, 2, clog(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ln, C32, 10.0 + 10.0i, 0.0 + 0.0i, 3, 2, clog(10.0+10.0i), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ten, S32, 3, 0, 3, 2, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ten, F32, 3.0, 0.0, 3, 2, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ten, F64, 3.0, 0.0, 3, 2, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( ten, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( log, S32, 1000, 0, 3, 2, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( log, F32, 1000.0, 0.0, 3, 2, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( log, F64, 1000.0, 0.0, 3, 2, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( log, C32, 1000.0 + 0.0i, 0.0 + 0.0i, 3, 2, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( sin, S32, M_PI_2, 0, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( sin, F32, M_PI_2, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( sin, F64, M_PI_2, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( sin, C32, M_PI_2 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dsin, S32, 90, 0, 3, 2 , 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dsin, F32, 90.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dsin, F64, 90.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dsin, C32, 90.0 + 00.0i, 0.0 + 0.0i, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( cos, S32, 0, 0, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( cos, F32, 0.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( cos, F64, 0.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( cos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dcos, S32, 0, 0, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dcos, F32, 0.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dcos, F64, 0.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dcos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( tan, S32, M_PI_4, 0, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( tan, F32, M_PI_4, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( tan, F64, M_PI_4, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( tan, C32, M_PI_4 + 0.0i, 0.0 + 0.0i, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dtan, S32, 45, 0, 3, 2, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dtan, F32, 45.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dtan, F64, 45.0, 0.0, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dtan, C32, 45.0 + 45.0i, 0.0 + 0.0i, 3, 2, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( asin, S32, 1, 0, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( asin, F32, 1.0, 0.0, 3, 2, M_PI_2 , errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( asin, F64, 1.0, 0.0, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( asin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dasin, S32, 1.0, 0, 3, 2, 90, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dasin, F32, 1.0, 0.0, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dasin, F64, 1.0, 0.0, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dasin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( acos, S32, 0, 0, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( acos, F32, 0.0, 0.0, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( acos, F64, 0.0, 0.0, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( acos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dacos, S32, 0, 0, 3, 2, 90, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dacos, F32, 0.0, 0.0, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dacos, F64, 0.0, 0.0, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( dacos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( atan, S32, 1, 0, 3, 2, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( atan, F32, 1.0, 0.0, 3, 2, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( atan, F64, 1.0, 0.0, 3, 2, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( atan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( datan, S32, 1, 0, 3, 2, 45, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( datan, F32, 1.0, 0.0, 3, 2, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( datan, F64, 1.0, 0.0, 3, 2, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpM( datan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + + testUnaryOpV( abs, S32, -10, 0, 3, 10, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( abs, F32, -10.0, 0.0, 3, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( abs, F64, -10.0, 0.0, 3, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( abs, C32, -10.0 - 10.0i, 0.0 + 0.0i, 3, 10+10i, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): abs was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( exp, S32, 10, 0, 3, cexp(10), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( exp, F32, 10.0, 0.0, 3, cexp(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( exp, F64, 10.0, 0.0, 3, cexp(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( exp, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, cexp(1.0+1.0i), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): exp was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ln, S32, 10, 0, 3, clog(10), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ln, F32, 10.0, 0.0, 3, clog(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ln, F64, 10.0, 0.0, 3, clog(10.0), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ln, C32, 10.0 + 10.0i, 0.0 + 0.0i, 3, clog(10.0+10.0i), errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ln was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ten, S32, 3, 0, 3, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ten, F32, 3.0, 0.0, 3, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ten, F64, 3.0, 0.0, 3, 1000, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( ten, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 10.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): ten was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( log, S32, 1000, 0, 3, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( log, F32, 1000.0, 0.0, 3, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( log, F64, 1000.0, 0.0, 3, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( log, C32, 1000.0 + 0.0i, 0.0 + 0.0i, 3, 3, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): log was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( sin, S32, M_PI_2, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( sin, F32, M_PI_2, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( sin, F64, M_PI_2, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( sin, C32, M_PI_2 + 0.0i, 0.0 + 0.0i, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): sin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dsin, S32, 90, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dsin, F32, 90.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dsin, F64, 90.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dsin, C32, 90.0 + 00.0i, 0.0 + 0.0i, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dsin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( cos, S32, 0, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( cos, F32, 0.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( cos, F64, 0.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( cos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): cos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dcos, S32, 0, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dcos, F32, 0.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dcos, F64, 0.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dcos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dcos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( tan, S32, M_PI_4, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( tan, F32, M_PI_4, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( tan, F64, M_PI_4, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( tan, C32, M_PI_4 + 0.0i, 0.0 + 0.0i, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): tan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dtan, S32, 45, 0, 3, 1, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dtan, F32, 45.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dtan, F64, 45.0, 0.0, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dtan, C32, 45.0 + 45.0i, 0.0 + 0.0i, 3, 1.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dtan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( asin, S32, 1, 0, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( asin, F32, 1.0, 0.0, 3, M_PI_2 , errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( asin, F64, 1.0, 0.0, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( asin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): asin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dasin, S32, 1.0, 0, 3, 90, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dasin, F32, 1.0, 0.0, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dasin, F64, 1.0, 0.0, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dasin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dasin was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( acos, S32, 0, 0, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( acos, F32, 0.0, 0.0, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( acos, F64, 0.0, 0.0, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( acos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, M_PI_2, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): acos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dacos, S32, 0, 0, 3, 90, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dacos, F32, 0.0, 0.0, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dacos, F64, 0.0, 0.0, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( dacos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 90.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): dacos was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( atan, S32, 1, 0, 3, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( atan, F32, 1.0, 0.0, 3, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( atan, F64, 1.0, 0.0, 3, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( atan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, M_PI_4, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): atan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( datan, S32, 1, 0, 3, 45, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( datan, F32, 1.0, 0.0, 3, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( datan, F64, 1.0, 0.0, 3, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + testUnaryOpV( datan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 45.0, errorFlag, memoryFlag); + ok(errorFlag== false, "psUnaryOp(): datan was successful"); + ok(memoryFlag== false, "no memory leaks"); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic03.c (revision 12167) @@ -0,0 +1,281 @@ +/** @file tst_psMatrixVectorArithmetic03.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver contains negative tests for psBinaryOp and psUanryOp: + * Check for NULL arguments + * Inconsistent element types + * Inconsistent element count + * Inconsistent dimensionality + * Division by zero + * Attempt to use min with complex numbers + * Attempt to use max with complex numbers + * Invalid operation + * + * XXX: Many of these tests are desinged to produce an error. They are commented out. + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-06 00:48:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(5); + psMemId idGlobal = psMemGetId(); + + CREATE_AND_SET_IMAGE(image1,F64,0,3,3); + CREATE_AND_SET_IMAGE(image2,F64,0,3,3); + CREATE_AND_SET_IMAGE(image3,F32,0,3,3); + CREATE_AND_SET_IMAGE(image4,F64,0,2,2); + CREATE_AND_SET_IMAGE(image5,C32,1+1i,3,3); + CREATE_AND_SET_VECTOR(vector1,F64,0,2); + CREATE_AND_SET_VECTOR(vector2,F64,0,3); + + // Check for NULL output argument + { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(NULL, image1, "+", image2); + ok(image6 != NULL, "psBinaryOp() produced a non-NULL image given no output to recycle."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for NULL input argument #1 + + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, NULL, "+", image2); + ok(image6 == NULL, "psBinaryOp() returned a NULL result given a NULL first operand."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for NULL input argument #2 + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image1, "+", NULL); + ok(image6 == NULL, "psBinaryOp() returned a NULL given a NULL second operand."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for NULL operand + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image1, NULL, image2); + ok(image6 == NULL, "psBinaryOp returned a NULL given a NULL operator."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for null output + { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psUnaryOp(NULL, image1, "sin"); + ok(image6 != NULL, "psUnaryOp produced an image given no output to recycle."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for NULL input arg + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psUnaryOp(image6, NULL, "sin"); + ok(image6 == NULL, "psUnaryOp returned a NULL given a NULL operand."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check for NULL operand + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psUnaryOp(image6, image1, NULL); + ok(image6 == NULL, "psUnaryOp returned a NULL operand."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent element types + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image3, "+", image2); + ok(image6 == NULL, "psBinaryOp returned a NULL given operands of different types"); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Check unary op to convert to correct type + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = psImageCopy(image6,image2,PS_TYPE_F64); + image6 = (psImage*)psUnaryOp(image6, image3, "sin"); + ok(!(image6 == NULL || image6->type.type != PS_TYPE_F32), + "psUnaryOp converted the type of the output."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent element count + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image4, "+", image2); + ok(image6 == NULL, "psBinaryOp returned a NULL given operands of different sizes."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent element in input and output + // XXX: This fails, but should work. + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = psImageCopy(image6,image2,PS_TYPE_F64); + image6 = (psImage*)psUnaryOp(image6, image4, "sin"); + ok(!(image6 == NULL || + image6->numCols != image6->numCols || + image6->numRows != image6->numRows),"psUnaryOp resized the output."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent size of input 1 and input 2 + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, vector1, "+", image2); + ok(image6 == NULL, "psBinaryOp returned a NULL given operands of different sizes."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent size of input 1 and input 2 + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + vector1->type.dimen = PS_DIMEN_TRANSV; + psImage* image6 = (psImage*)psBinaryOp(image6, vector1, "+", image2); + ok(image6 == NULL, "psBinaryOp returned a NULL given operands of different sizes."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Inconsistent dimensionality + // Following should generate an two error messages + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = psImageCopy(image6,image2,PS_TYPE_F64); + image6 = (psImage*)psUnaryOp(image6, vector2, "sin"); + ok(image6 == NULL, "psUnaryOp returned NULL given wrong type out parameter."); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Attempt to use min with complex numbers + // Following should generate error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image5, "min", image5); + ok(image6 == NULL, "psUnaryOp returned NULL with min of complex numbers"); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Attempt to use max with complex numbers + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image5, "max", image5); + ok(image6 == NULL, "psUnaryOp returned NULL with max of complex numbers"); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Invalid operation + // Following should generate an error messgae + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psBinaryOp(image6, image1, "yarg", image2); + ok(image6 == NULL, "psBinaryOp returned NULL with invalid operator"); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + psImage* image6 = (psImage*)psUnaryOp(image6, image1, "yarg"); + ok(image6 == NULL, "psUnaryOp returned NULL with invalid operator"); + psFree(image6); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + CREATE_AND_SET_VECTOR(vector4,F64,0,3); + CREATE_AND_SET_VECTOR(vector5,F64,0,3); + + // Input parameter with dimension of PS_DIMEN_OTHER + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + vector4->type.dimen = PS_DIMEN_OTHER; + ok(psBinaryOp(NULL,vector4,"+",vector5) == NULL, "psBinaryOp should return null when input dimen PS_DIMEN_OTHER."); + vector4->type.dimen = PS_DIMEN_VECTOR; + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Input parameter with dimension of PS_DIMEN_OTHER + // Following should generate an error message + if (0) { + psMemId id = psMemGetId(); + vector4->type.dimen = PS_DIMEN_OTHER; + ok(psUnaryOp(NULL,vector4,"sin") == NULL, "psUnaryOp should return null when input dimen PS_DIMEN_OTHER"); + vector4->type.dimen = PS_DIMEN_VECTOR; + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(vector4); + psFree(vector5); + psFree(image1); + psFree(image2); + psFree(image3); + psFree(image4); + psFree(image5); + psFree(vector1); + psFree(vector2); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); +} + Index: /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic04.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMatrixVectorArithmetic04.c (revision 12167) @@ -0,0 +1,234 @@ +/** @file tst_psMatrixVectorArithmetic04.c + * + * @brief Test driver for psBinary arithmetic operations with scalars + * + * This test driver will test the following binary operation with scalar inputs + * vector addition with scalar in first argument + * image addition with scalar in second argument + * + * XXX: The scalar functions at the end are producing memory corruption errors + * when they shouldn't. + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-06 00:48:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + + +// Create vector +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = psVectorAlloc(SIZE,PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + +// Create image +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(12); + + // testBinOpScalarFirst(void) + { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_VECTOR(vector1,S8,1,5) + CREATE_AND_SET_VECTOR(vector2,S8,0,5) + psScalar* inScalar1 = psScalarAlloc(2,PS_TYPE_S8); + + // Add vector and scalar + vector2 = (psVector*)psBinaryOp(vector2,inScalar1,"+",vector1); + // Verify the result vector + for(psS32 i=0; in; i++) + { + if(vector2->data.S8[i] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return vector[%d]",i); + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct vector"); + psFree(vector1); + psFree(vector2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_VECTOR(vector3,S8,1,5); + CREATE_AND_SET_VECTOR(vector4,S8,0,3); + + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + vector4->type.dimen = PS_DIMEN_TRANSV; + vector4 = (psVector*)psBinaryOp(vector4,inScalar2,"+",vector3); + for(psS32 i=0; in; i++) + { + if(vector4->data.S8[i] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return vector[%d]",i); + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct vector"); + psFree(vector3); + psFree(vector4); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_IMAGE(image1,S8,1,5,5) + psImage* image2 = NULL; + psScalar* inScalar3 = psScalarAlloc(2,PS_TYPE_S8); + + image2 = (psImage*)psBinaryOp(image2,inScalar3,"+",image1); + for(psS32 i=0; inumRows; i++) + { + for(psS32 j=0; jnumCols; j++) { + if(image2->data.S8[i][j] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return image[%d][%d]",i,j); + } + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct matrix"); + psFree(image1); + psFree(image2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_VECTOR(vector1,S8,1,5) + CREATE_AND_SET_VECTOR(vector2,S8,0,5) + psScalar* inScalar1 = psScalarAlloc(2,PS_TYPE_S8); + + vector2 = (psVector*)psBinaryOp(vector2,vector1,"+",inScalar1); + for(psS32 i=0; in; i++) + { + if(vector2->data.S8[i] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return vector[%d]",i); + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct vector"); + psFree(vector1); + psFree(vector2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_VECTOR(vector3,S8,1,5); + CREATE_AND_SET_VECTOR(vector4,S8,0,3); + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + + vector4->type.dimen = PS_DIMEN_TRANSV; + vector4 = (psVector*)psBinaryOp(vector4,vector3,"+",inScalar2); + for(psS32 i=0; in; i++) + { + if(vector4->data.S8[i] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return vector[%d]",i); + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct vector"); + psFree(vector3); + psFree(vector4); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + if (1) { + psMemId id = psMemGetId(); + bool psErrorFlag = false; + CREATE_AND_SET_IMAGE(image1,S8,1,5,5); + psImage* image2 = NULL; + psScalar* inScalar3 = psScalarAlloc(2,PS_TYPE_S8); + + image2 = (psImage*)psBinaryOp(image2,image1,"+",inScalar3); + for(psS32 i=0; inumRows; i++) { + for(psS32 j=0; jnumCols; j++) { + if(image2->data.S8[i][j] != 3 ) { + psErrorFlag = true; + diag("Unexpected value in return image[%d][%d]",i,j); + } + } + } + ok(!psErrorFlag, "psBinaryOp() produced the correct matrix"); + psFree(image1); + psFree(image2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testBinOpScalarBoth + // This test fails. It shouldn't. + if (0) { + psMemId id = psMemGetId(); + psScalar* inScalar1 = psScalarAlloc(1,PS_TYPE_S8); + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + psScalar* outScalar = psScalarAlloc(4,PS_TYPE_S8); + + outScalar = (psScalar*)psBinaryOp(outScalar,inScalar1,"+",inScalar2); + ok(outScalar->data.S8 == 3, "psBinaryOp() produced the correct result"); + psFree(outScalar); + psFree(inScalar1); + psFree(inScalar2); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // This test fails. It shouldn't. + if (0) { + psMemId id = psMemGetId(); + psScalar* inScalar3 = psScalarAlloc(10,PS_TYPE_S8); + psScalar* inScalar4 = psScalarAlloc(20,PS_TYPE_S8); + psScalar* outScalar1 = NULL; + + outScalar1 = (psScalar*)psBinaryOp(outScalar1,inScalar3,"+",inScalar4); + ok(outScalar1->data.S8 == 30, "psBinaryOp() produced the correct result"); + psFree(outScalar1); + psFree(inScalar3); + psFree(inScalar4); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // This test fails. It shouldn't. + // testUnaryOpScalar + if (0) { + psMemId id = psMemGetId(); + psScalar* inScalar = psScalarAlloc(-1,PS_TYPE_F32); + psScalar* outScalar = NULL; + + outScalar = (psScalar*)psUnaryOp(outScalar,inScalar,"abs"); + ok(outScalar->data.F32 == 1, "psUnaryOp() produced the correct result"); + psFree(outScalar); + psFree(inScalar); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} + Index: /branches/rel-1-1/psLib/test/math/tap_psMinimizeLMM.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMinimizeLMM.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMinimizeLMM.c (revision 12167) @@ -0,0 +1,171 @@ +/***************************************************************************** + This routine must ensure that psMinimizeLM() works correctly. + + XXX: This code needs a lot of additional test case work. + The minimization currently (always?) fails and we don't + attempt to check the output values. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_ITERATIONS 100 +#define ERR_TOL 1e-6 +#define NUM_DATA_POINTS 300 +#define NUM_PARAMS 3 +#define VERBOSE 0 +float expectedParm[NUM_PARAMS]; + + +float function(const psVector *params, const psVector *x) +{ + return params->data.F32[0] * + expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))) + + params->data.F32[2]; +} + +void derivatives(psVector *deriv, const psVector *params, const psVector *x) +{ + deriv->data.F32[0] = expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))); + deriv->data.F32[1] = params->data.F32[0] * (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1])) / params->data.F32[1] / params->data.F32[1] / params->data.F32[1] * expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))); + deriv->data.F32[2] = 1.0; +} + + +/***************************************************************************** +fitFunc(): + sum = param[0] * x[0] * x[1] + + param[1] * x[0] + + param[2] * x[0]^2 + + param[3] * x[1] + + param[4] * x[1]^2 + + *****************************************************************************/ +psF32 fitFunc(psVector *deriv, + psVector *params, + psVector *x) +{ + if ((deriv == NULL) || (params == NULL) || (x == NULL)) { + psError(PS_ERR_UNKNOWN, true, "deriv or params or x is NULL.\n"); + } + + derivatives(deriv, params, x); + return function(params, x); +} + +#define NUM_ITER 10 +#define TOL 20.0 +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(2); + // Test psMinimizationAlloc() + { + psMemId id = psMemGetId(); + psMinimization *tmp = psMinimizationAlloc(NUM_ITER, TOL); + ok(tmp != NULL, "psMinimizationAlloc() returned non-NULL"); + skip_start(tmp == NULL, 5, "Skipping tests because psMinimizationAlloc() failed"); + ok(tmp->maxIter == NUM_ITER, "psMinimizationAlloc() properly set ->maxIter"); + ok(tmp->tol == TOL, "psMinimizationAlloc() properly set ->tol"); + ok(tmp->value == 0.0, "psMinimizationAlloc() properly set ->value"); + ok(tmp->iter == 0, "psMinimizationAlloc() properly set ->iter (%d)", tmp->iter); + ok(isnan(tmp->lastDelta), "psMinimizationAlloc() properly set ->lastDelta (%f)", tmp->lastDelta); + skip_end(); + psFree(tmp); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + /* + // Test psMinConstrainAlloc() + { + psMemId id = psMemGetId(); + psMinConstrain *tmp = psMinConstrainAlloc(NUM_ITER, TOL); + ok(tmp != NULL. "psMinConstrainAlloc() returned non-NULL"); + skip_start(tmp == NULL, 4, "Skipping tests because psMinConstrainAlloc() failed"); + ok(tmp->paramMask == NULL, "psMinConstrainAlloc() properly set ->paramMask"); + ok(tmp->paramMax == NULL, "psMinConstrainAlloc() properly set ->paramMax"); + ok(tmp->paramMin == NULL, "psMinConstrainAlloc() properly set ->paramMin"); + ok(tmp->paramDelta == NULL, "psMinConstrainAlloc() properly set ->paramDelta"); + psFree(tmp); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + */ + + // Test psMinimizeLMChi2() + { + psMemId id = psMemGetId(); + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Random number generator; using known seed + psMinimization *min = psMinimizationAlloc(NUM_ITERATIONS, ERR_TOL); + psArray *ordinates = psArrayAlloc(NUM_DATA_POINTS); + psVector *coordinates = psVectorAlloc(NUM_DATA_POINTS, PS_TYPE_F32); + psVector *errors = psVectorAlloc(NUM_DATA_POINTS, PS_TYPE_F32); + psVector *params = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + psVector *trueParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + bool tmpBool; + trueParams->data.F32[0] = 100.0; // Normalisation + trueParams->data.F32[1] = 3.0; // Width + trueParams->data.F32[2] = 10.0; // Background + + // Set parameters + for (long i = 0; i < NUM_PARAMS; i++) + { + // Ensure we're not starting right on the true value: + params->data.F32[i] = trueParams->data.F32[i] * + (1.0 - psRandomGaussian(rng) / 10.0); + } + + for (long i = 0; i < NUM_DATA_POINTS; i++) + { + psVector *x = psVectorAlloc(2, PS_TYPE_F32); + x->data.F32[0] = 10.0 * psRandomUniform(rng) - 5.0; + x->data.F32[1] = 10.0 * psRandomUniform(rng) - 5.0; + ordinates->data[i] = x; + // Add some noise + coordinates->data.F32[i] = function(params, x) + 0.1 * (2.0 * psRandomGaussian(rng) - 1.0); + errors->data.F32[i] = 0.1; + if (VERBOSE) { + printf("Data %ld: (%f, %f) --> %f\n", + i, x->data.F32[0], x->data.F32[1], coordinates->data.F32[i]); + } + } + + tmpBool = psMinimizeLMChi2(min, NULL, params, NULL, ordinates, coordinates, errors, + (psMinimizeLMChi2Func)fitFunc); + ok(tmpBool, "psMinimizeLMChi2() suceeded"); + skip_start(!tmpBool, 4, "Skipping tests because psMinimizeLMChi2() failed"); + + printf("Minimisation took %d iterations\n", min->iter); + printf("chi^2 at the minimum is %.3g\n", min->value); + for (long i = 0; i < NUM_PARAMS; i++) + { + printf("Parameter %ld at the minimum is %.3f, expected: %f\n", i, + params->data.F32[i], trueParams->data.F32[i]); + } + float diff = 0.0; + for (long i = 0; i < NUM_DATA_POINTS; i++) + { + psVector *x = ordinates->data[i]; + float fitted = function(trueParams, x); + float expected = function(params, x); + diff += (fitted - expected) / fabsf(expected); + if (VERBOSE) { + printf("Data point %ld: Fitted: %f, expected: %f\n", i, fitted, expected); + } + } + printf("Mean relative difference is %f\n", diff/(float)NUM_DATA_POINTS); + + psFree(min); + psFree(params); + psFree(trueParams); + psFree(ordinates); + psFree(coordinates); + psFree(errors); + psFree(rng); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psMinimizePowell.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psMinimizePowell.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psMinimizePowell.c (revision 12167) @@ -0,0 +1,236 @@ +/***************************************************************************** + This routine must ensure that psMinimizePowell() works correctly. + + XXX: This needs extensive work + XXX: We test with a NULL and non-NULL paramMask, however, the mask + has all zero values. + XXX: The tests that should generate errors are if'ed out. + XXX: psMinimizeChi2Powell() is untested. + XXX: Also, the test currently fails because of memory corruption in + psMinimizePowell(). + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define N 5 +#define MIN_VALUE 20.0 +#define NUM_PARAMS 10 +#define ERROR_TOLERANCE 0.10 +float expectedParm[NUM_PARAMS]; +psS32 testStatus = true; + +/***************************************************************************** +myFunc(): This routine subtracts the associate value in expectedParm[] from +each parameter and then squares it, then sums that for all parameters, then +adds MIN_VALUE to it. The minimum for this function will be MIN_VALUE, and +will occur when each parameter equals the associated value in expectedParm[]. + +This procedure ignores the coordinates, other than to ensure that they were +passed correctly from psMinimizePowell(). + *****************************************************************************/ +float myFunc(psVector *myParams, + psArray *myCoords) +{ + float sum = 0.0; + float coordData = 0.0; + float expData = 0.0; + psS32 i; + + // + // Simply ensure that the coordinate data was passed correctly. + // + for (i=0;idata[i]))->data.F32[0]; + expData = (float) (i+10); + if (fabs(coordData - expData) > FLT_EPSILON) { + printf("ERROR(1): coordinate data was incorrectly passed to myFunc()\n"); + printf("ERROR(1): was (%f) should be (%f)\n", coordData, expData); + testStatus = false; + } + coordData = ((psVector *) (myCoords->data[i]))->data.F32[1]; + expData = (float) (i+3); + if (fabs(coordData - expData) > FLT_EPSILON) { + printf("ERROR(2): coordinate data was incorrectly passed to myFunc()\n"); + printf("ERROR(2): was (%f) should be (%f)\n", coordData, expData); + testStatus = false; + } + } + + + sum = 0.0; + for (i=0;idata.F32[i] - expectedParm[i]) * (myParams->data.F32[i] - expectedParm[i]); + } + sum = MIN_VALUE + (sum * sum); + + return(sum); +} + + +psS32 main() +{ + psLogSetFormat("HLNM"); + plan_tests(2); + + // Check for various errors on unallowed input parameters + { + psMemId id = psMemGetId(); + + psVector *myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + psVector *myParamMask = psVectorAlloc(NUM_PARAMS, PS_TYPE_U8); + psMinimization *min = psMinimizationAlloc(100, 0.01); + psArray *myCoords = psArrayAlloc(N); + + for (psS32 i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + ((psVector *) (myCoords->data[i]))->n++; + } + for (psS32 i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParamMask->data.U8[i] = 0; + myParams->n++; + myParamMask->n++; + } + + // Following should generate error for null minimize + if (0) + { + psMinimizePowell(NULL, myParams, myParamMask, myCoords, (psMinimizePowellFunc) myFunc); + } + + // Following should generate error for null parameter vector + if (0) + { + psMinimizePowell(min, NULL, myParamMask, myCoords,(psMinimizePowellFunc) myFunc); + } + + // Following should generate error for null coords + if (0) + { + psMinimizePowell(min, myParams, myParamMask, NULL, (psMinimizePowellFunc) myFunc); + } + + // Following should generate error for null function + if (0) + { + psMinimizePowell(min, myParams, myParamMask, myCoords, NULL); + } + + psFree(myParams); + psFree(myParamMask); + psFree(min); + psFree(myCoords); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Powell minimize with parameter mask + { + psMemId id = psMemGetId(); + psVector *myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + psMinimization *min = psMinimizationAlloc(100, 0.01); + psArray *myCoords = psArrayAlloc(N); + psVector *myParamMask = psVectorAlloc(NUM_PARAMS, PS_TYPE_U8); + + for (psS32 i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + } + for (psS32 i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParamMask->data.U8[i] = 0; + } + + bool tmpBool = psMinimizePowell(min, myParams, myParamMask, myCoords, + (psMinimizePowellFunc) myFunc); + ok(tmpBool, "psMinimizePowell() returned sucessfully"); + skip_start(!tmpBool, 0, "Skipping tests because psMinimizePowell() failed"); + + printf("\nThe minimum is %f (expected: %f)\n", min->value, MIN_VALUE); + for (psS32 i=0;idata.F32[i], expectedParm[i]); + + if (fabs(myParams->data.F32[i] - expectedParm[i]) > fabs(ERROR_TOLERANCE * expectedParm[i])) { + printf("ERROR: Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + testStatus = false; + } else { + printf("Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + } + } + + psFree(myCoords); + psFree(myParams); + psFree(myParamMask); + psFree(min); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Powell minimize with parameter mask + // The only difference from the previous block is that paramMask is now NULL + { + psMemId id = psMemGetId(); + psVector *myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + psMinimization *min = psMinimizationAlloc(100, 0.01); + psArray *myCoords = psArrayAlloc(N); + bool tmpBool; + + myCoords->n = N; + for (psS32 i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + } + for (psS32 i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParams->n++; + } + + tmpBool = psMinimizePowell(min, myParams, NULL, myCoords, + (psMinimizePowellFunc) myFunc); + ok(tmpBool, "psMinimizePowell() returned sucessfully"); + skip_start(!tmpBool, 0, "Skipping tests because psMinimizePowell() failed"); + + printf("\nThe minimum is %f (expected: %f)\n", min->value, MIN_VALUE); + for (psS32 i=0;idata.F32[i], expectedParm[i]); + + if (fabs(myParams->data.F32[i] - expectedParm[i]) > fabs(ERROR_TOLERANCE * expectedParm[i])) { + printf("ERROR: Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + testStatus = false; + } else { + printf("Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + } + } + psFree(myCoords); + psFree(myParams); + psFree(min); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolyFit1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolyFit1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolyFit1D.c (revision 12167) @@ -0,0 +1,518 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 1D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 1D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + +XXX: Try null stats. + +XXX: The tests with "Some Vectors NULL" fail as of 2006/12, they had passed +previously as of 2006/02. They are commented out for now. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 100 +#define POLY_ORDER 5 +#define A 2.0 +#define B 3.0 +#define C 4.0 +#define D 5.0 +#define E 6.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 + +psF32 setData(psF32 x) +{ + return(A + (B * x) + (C * x * x) + (D * x * x * x) + (E * x * x * x * x)); +} + +bool genericTest( + psU32 flags, + psS32 polyOrder, + psS32 numData, + bool expectedRC) +{ + psS32 currentId = psMemGetId(); + bool testStatus = true; + psS32 memLeaks = 0; + psPolynomial1D *myPoly = NULL; + psVector *x = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + stats->options |= PS_STAT_SAMPLE_STDEV; + + if (VERBOSE) + printf("psMinimize functions: 1D Polynomial Fitting Functions"); + + if (expectedRC == false && VERBOSE) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (VERBOSE) { + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + } + + if (flags & TS00_POLY_ORD) { + if (VERBOSE) + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, polyOrder); + } + + if (flags & TS00_POLY_CHEB) { + if (VERBOSE) + printf(" using chebyshev polynomials\n"); + myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, polyOrder); + } + + if (flags & TS00_X_NULL) { + if (VERBOSE) + printf(" using a NULL x vector\n"); + numData = 30; + } + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using a known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = (flags & TS00_X_NULL) ? i : 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i]); + } + if (flags & TS00_X_NULL && flags & TS00_POLY_CHEB) { + // Renormalise the indices + p_psNormalizeVectorRange(xTruth, -1.0, 1.0); + } + psFree(rng); + if (EXTRA_VERBOSE) + for (int i = 0; i < numData; i++) { + printf("Original %d: %f\t%f\n", i, xTruth->data.F64[i], fTruth->data.F64[i]); + } + + if (flags & TS00_X_F32) { + if (VERBOSE) + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1.0, 1.0); + } + #endif + + } + + if (flags & TS00_X_S32) { + if (VERBOSE) + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1, 1); + } + #endif + + } + + if (flags & TS00_X_F64) { + if (VERBOSE) + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1.0, 1.0); + } + #endif + + } + + if (flags & TS00_F_NULL) { + if (VERBOSE) + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + if (VERBOSE) + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + } + + if (flags & TS00_F_S32) { + if (VERBOSE) + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + } + + if (flags & TS00_F_F64) { + if (VERBOSE) + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + } + + if (flags & TS00_FERR_NULL) { + if (VERBOSE) + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + if (VERBOSE) + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + if (VERBOSE) + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + if (VERBOSE) + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + bool rc = false; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial1D(myPoly, stats, mask, MASK_VALUE, f, fErr, x); + } else { + rc = psVectorFitPolynomial1D(myPoly, mask, MASK_VALUE, f, fErr, x); + } + + if (!rc) { + if (expectedRC == true) { + diag("TEST ERROR: the 1D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the 1D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;icoeff[i]); + } + } + + psVector *result = psPolynomial1DEvalVector(myPoly, xTruth); + for (psS32 i=0; idata.F64[i]; + psF32 actualData = result->data.F64[i]; + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + diag("TEST ERROR: Fitted data %d: %.1f --> %.1f vs %.1f\n", + i, xTruth->data.F64[i], actualData, expectData); + testStatus = false; + } else { + if (EXTRA_VERBOSE) { + printf("GOOD: Fitted data %d: %1.f --> %.1f vs %.1f\n", + i, xTruth->data.F64[i], actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(stderr, false); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(f); + psFree(xTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +int main() +{ + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial1D", 0); + psTraceSetLevel("VectorFitPolynomial1DOrd", 0); + psTraceSetLevel("VectorFitPolynomial1DCheb", 0); + psTraceSetLevel("vectorFitPolynomial1DCheb", 0); + psTraceSetLevel("vectorFitPolynomial1DChebSlow", 0); + psTraceSetLevel("vectorFitPolynomial1DChebFast", 0); + psTraceSetLevel("psVectorFitPolynomial1D", 0); + psTraceSetLevel("p_psCreateChebyshevPolys", 0); + + plan_tests(64); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, F Vector NULL"); + // Unallowable vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, Unallowable vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_S32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, Unallowable vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_S32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, Unallowable vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_S32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, Unallowable vector types"); + + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit, Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit, Mismatch vector types"); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit, F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit, Mismatch data type"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Mismatch data type"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit, Mismatch data type"); + + + // + // F32 tests: Chebyshev polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Some Vectors NULL."); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Some Vectors NULL."); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Some Vectors NULL."); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Some Vectors NULL."); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, non-clip fit. F Vector NULL."); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, non-clip fit. Mismatch vector types."); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Mismatch vector types."); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, non-clip fit. Mismatch vector types."); + + + // + // F64 tests: Chebyshev polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, non-clip fit. Mismatch vector types"); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD + | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), + "F64 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_ORD + | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), + "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + + + // + // F32 tests: Chebyshev polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, clip fit"); + // Some Vectors NULL + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F32 tests: Chebyshev polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F32 tests: Chebyshev polys, clip fit. Mismatch vector types"); + + + // + // F64 tests: Chebyshev polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, clip fit"); + // Some Vectors NULL + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, clip fit. Some Vectors NULL"); + // ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true), "F64 tests: Chebyshev polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false), "F64 tests: Chebyshev polys, clip fit. Mismatch vector types"); + + // Note: memory leaks tests are performed in the genericTest() subroutine. +} + Index: /branches/rel-1-1/psLib/test/math/tap_psPolyFit2D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolyFit2D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolyFit2D.c (revision 12167) @@ -0,0 +1,447 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 2D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 2D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 100 +#define POLY_ORDER_X 2 +#define POLY_ORDER_Y 3 +#define A 2.0 +#define B 3.0 +#define C 4.0 +#define D 5.0 +#define E 6.0 +#define F 4.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 + +psF32 setData(psF32 x, psF32 y) +{ + return(A + (B * x) + (C * x * x) + (D * y) + (E * y * y) + (F * x * y)); +} + +psS32 genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 numData, + bool expectedRC) +{ + psS32 currentId = psMemGetId(); + psS32 testStatus = true; + psS32 memLeaks = 0; + psPolynomial2D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + stats->options |= PS_STAT_SAMPLE_STDEV; + + if (VERBOSE) + printf("psMinimize functions: 2D Polynomial Fitting Functions"); + + if (expectedRC == false && VERBOSE) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (VERBOSE) { + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + } + + if (flags & TS00_POLY_ORD) { + if (VERBOSE) + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY); + } + + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using an RNG with a known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i]); + } + psFree(rng); + + if (flags & TS00_X_NULL) { + if (VERBOSE) + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + if (VERBOSE) + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + if (VERBOSE) + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + if (VERBOSE) + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + if (flags & TS00_Y_NULL) { + if (VERBOSE) + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + if (VERBOSE) + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + if (VERBOSE) + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + if (VERBOSE) + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_F_NULL) { + if (VERBOSE) + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + if (VERBOSE) + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_F_S32) { + if (VERBOSE) + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + if (flags & TS00_F_F64) { + if (VERBOSE) + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_FERR_NULL) { + if (VERBOSE) + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + if (VERBOSE) + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + if (VERBOSE) + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + if (VERBOSE) + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + bool rc = false; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial2D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y); + } else { + rc = psVectorFitPolynomial2D(myPoly, mask, MASK_VALUE, f, fErr, x, y); + } + + if (!rc) { + if (expectedRC == true) { + diag("TEST ERROR: the 2D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the 2D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;icoeff[i][j]); + } + } + } + + psVector *result = psPolynomial2DEvalVector(myPoly, xTruth, yTruth); + for (psS32 i=0 ;idata.F64[i]; + psF64 expectData = fTruth->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + diag("TEST ERROR: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (EXTRA_VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(stderr, false); + psFree(myPoly); + psFree(mask); + psFree(xTruth); + psFree(yTruth); + psFree(fTruth); + psFree(x); + psFree(y); + psFree(f); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +psS32 main() +{ + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial2D", 0); + psTraceSetLevel("VectorFitPolynomial2DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial2D", 0); + + plan_tests(44); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolyFit3D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolyFit3D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolyFit3D.c (revision 12167) @@ -0,0 +1,505 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 3D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 3D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 100 +#define POLY_ORDER_X 2 +#define POLY_ORDER_Y 3 +#define POLY_ORDER_Z 2 +#define A 100.0 +#define B 2.0 +#define C 3.0 +#define D 4.0 +#define E 5.0 +#define F 4.0 +#define H 3.0 +#define J 3.0 +#define K 1.0 +#define L 5.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 +#define TS00_Z_NULL 0x01000000 +#define TS00_Z_F32 0x02000000 +#define TS00_Z_F64 0x04000000 +#define TS00_Z_S32 0x08000000 + +psF32 setData(psF32 x, psF32 y, psF32 z) +{ + if (0) { + // Linear case, for testing. + return(A + (B * x) + (D * y) + (H * z)); + } else { + return(A + (B * x) + (C * x * x) + (D * y) + (E * y * y) + (F * x * y) + (H * z) + + (J * z * z) + (K * x * z) + (L * y * z)); + } +} + +psS32 genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 polyOrderZ, + psS32 numData, + bool expectedRC) +{ + psS32 currentId = psMemGetId(); + psS32 testStatus = true; + psS32 memLeaks = 0; + psPolynomial3D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *z = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + stats->options |= PS_STAT_SAMPLE_STDEV; + + if (VERBOSE) + printf("psMinimize functions: 3D Polynomial Fitting Functions"); + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *zTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + zTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + zTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i], zTruth->data.F64[i]); + } + psFree(rng); + + if (expectedRC == false && VERBOSE) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (VERBOSE) { + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + } + + if (flags & TS00_POLY_ORD) { + if (VERBOSE) + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY, polyOrderZ); + } + + if (flags & TS00_X_NULL) { + if (VERBOSE) + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + if (VERBOSE) + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + if (VERBOSE) + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + if (VERBOSE) + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + + if (flags & TS00_Y_NULL) { + if (VERBOSE) + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + if (VERBOSE) + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + if (VERBOSE) + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + if (VERBOSE) + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_Z_NULL) { + if (VERBOSE) + printf(" using a NULL z vector\n"); + } + + if (flags & TS00_Z_F32) { + if (VERBOSE) + printf(" using a psF32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F32); + } + + if (flags & TS00_Z_S32) { + if (VERBOSE) + printf(" using a psS32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_S32); + } + + if (flags & TS00_Z_F64) { + if (VERBOSE) + printf(" using a psF64 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F64); + } + + + if (flags & TS00_F_NULL) { + if (VERBOSE) + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + if (VERBOSE) + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_F_S32) { + if (VERBOSE) + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + if (flags & TS00_F_F64) { + if (VERBOSE) + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_FERR_NULL) { + if (VERBOSE) + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + if (VERBOSE) + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + if (VERBOSE) + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + if (VERBOSE) + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + bool rc = false; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial3D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y, z); + } else { + rc = psVectorFitPolynomial3D(myPoly, mask, MASK_VALUE, f, fErr, x, y, z); + } + + if (!rc) { + if (expectedRC == true) { + diag("TEST ERROR: the 3D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the 3D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;icoeff[i][j][k]); + } + } + } + } + + psVector *result = psPolynomial3DEvalVector(myPoly, xTruth, yTruth, zTruth); + for (psS32 i=0 ;idata.F64[i]; + psF32 actualData = result->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + diag("TEST ERROR: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (EXTRA_VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(stderr, false); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(y); + psFree(z); + psFree(f); + psFree(xTruth); + psFree(yTruth); + psFree(zTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +psS32 main() +{ + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial3D", 0); + psTraceSetLevel("VectorFitPolynomial3DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial3D", 0); + + plan_tests(52); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolyFit4D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolyFit4D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolyFit4D.c (revision 12167) @@ -0,0 +1,701 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 4D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 4D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + +XXX: A few tests which previously worked (2006/02) now fail (2006/12). See +XXX comment below. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 200 +#define POLY_ORDER_X 1 +#define POLY_ORDER_Y 1 +#define POLY_ORDER_Z 1 +#define POLY_ORDER_T 1 +#define A 100.0 +#define B 2.0 +#define C 3.0 +#define D 4.0 +#define E 5.0 +#define F 6.0 +#define H 3.0 +#define J 3.0 +#define K 1.0 +#define L 5.0 +#define M 4.0 +#define N 3.0 +#define O 2.0 +#define P 1.0 +#define Q 5.0 +#define ERROR_TOLERANCE 0.05 +#define YERR 0.1 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 3.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 +#define TS00_Z_NULL 0x01000000 +#define TS00_Z_F32 0x02000000 +#define TS00_Z_F64 0x04000000 +#define TS00_Z_S32 0x08000000 +#define TS00_T_NULL 0x10000000 +#define TS00_T_F32 0x20000000 +#define TS00_T_F64 0x40000000 +#define TS00_T_S32 0x80000000 + +psF32 setData(psF32 x, psF32 y, psF32 z, psF32 t) +{ + if (0) { + // Linear case, for testing. + return(A + (B * x) + (C * y) + (D * z) + (E * t)); + } else { + #if 0 + return(A + (B * x) + (C * y) + (D * z) + (E * t) + + (F * x * x) + (H * y * y) + (J * z * z) + (K * t * t) + + (L * x * y) + (M * x * z) + (N * x * t) + (O * y * z) + (P * y * t) + (Q * z * t)); + #else + + return A + (B * x) + (C * y) + (D * z) + (E * t) + (F * x * y); + #endif + + } +} + +bool genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 polyOrderZ, + psS32 polyOrderT, + psS32 numData, + bool expectedRC) +{ + psS32 currentId = psMemGetId(); + bool testStatus = true; + psS32 memLeaks = 0; + psPolynomial4D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *z = NULL; + psVector *t = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + stats->options |= PS_STAT_SAMPLE_STDEV; + + if (VERBOSE) + printf("psMinimize functions: 4D Polynomial Fitting Functions"); + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *zTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *tTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + zTruth->n = numData; + tTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + zTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + tTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i], + zTruth->data.F64[i], tTruth->data.F64[i]); + } + psFree(rng); + + if (expectedRC == false && VERBOSE) { + printf("This test should generate an error message, and return NULL.\n"); + } + if (VERBOSE) { + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + } + + if (flags & TS00_POLY_ORD) { + if (VERBOSE) + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY, + polyOrderZ, polyOrderT); + + #if 1 + + for (int ix = 0; ix < polyOrderX + 1; ix++) { + for (int iy = 0; iy < polyOrderY + 1; iy++) { + for (int iz = 0; iz < polyOrderZ + 1; iz++) { + for (int it = 0; it < polyOrderT + 1; it++) { + myPoly->mask[ix][iy][iz][it] = 0xff; // Mask it out + } + } + } + } + + // Put these back in + myPoly->mask[0][0][0][0] = 0; // A + myPoly->mask[1][0][0][0] = 0; // B * x + myPoly->mask[0][1][0][0] = 0; // C * y + myPoly->mask[0][0][1][0] = 0; // D * z + myPoly->mask[0][0][0][1] = 0; // E * t + myPoly->mask[1][1][0][0] = 0; // F * xy + #endif + + } + + if (flags & TS00_X_NULL) { + if (VERBOSE) + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + if (VERBOSE) + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + if (VERBOSE) + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + if (VERBOSE) + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + + if (flags & TS00_Y_NULL) { + if (VERBOSE) + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + if (VERBOSE) + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + if (VERBOSE) + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + if (VERBOSE) + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_Z_NULL) { + if (VERBOSE) + printf(" using a NULL z vector\n"); + } + + if (flags & TS00_Z_F32) { + if (VERBOSE) + printf(" using a psF32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F32); + } + + if (flags & TS00_Z_S32) { + if (VERBOSE) + printf(" using a psS32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_S32); + } + + if (flags & TS00_Z_F64) { + if (VERBOSE) + printf(" using a psF64 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F64); + } + + if (flags & TS00_T_NULL) { + if (VERBOSE) + printf(" using a NULL t vector\n"); + } + + if (flags & TS00_T_F32) { + if (VERBOSE) + printf(" using a psF32 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_F32); + } + + if (flags & TS00_T_S32) { + if (VERBOSE) + printf(" using a psS32 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_S32); + } + + if (flags & TS00_T_F64) { + if (VERBOSE) + printf(" using a psF64 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_F64); + } + + + if (flags & TS00_F_NULL) { + if (VERBOSE) + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + if (VERBOSE) + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4] *= 2.0; + f->data.F32[numData/2] *= 2.0; + f->data.F32[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_F_S32) { + if (VERBOSE) + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4] *= 2.0; + f->data.S32[numData/2] *= 2.0; + f->data.S32[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_F_F64) { + if (VERBOSE) + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4] *= 2.0; + f->data.F64[numData/2] *= 2.0; + f->data.F64[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_FERR_NULL) { + if (VERBOSE) + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + if (VERBOSE) + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + if (VERBOSE) + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + if (VERBOSE) + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + bool rc = false; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial4D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y, z, t); + } else { + rc = psVectorFitPolynomial4D(myPoly, mask, MASK_VALUE, f, fErr, x, y, z, t); + } + + if (!rc) { + if (expectedRC == true) { + diag("TEST ERROR: the 4D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the 4D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;icoeff[i][j][k][l]); + } + } + } + } + } + + psVector *result = psPolynomial4DEvalVector(myPoly, xTruth, yTruth, zTruth, tTruth); + for (int i=0;idata.F64[i]; + psF32 actualData = result->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + diag("TEST ERROR: Fitted data %d: (%f), expected was (%f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (EXTRA_VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(stderr, false); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(y); + psFree(z); + psFree(t); + psFree(f); + psFree(xTruth); + psFree(yTruth); + psFree(zTruth); + psFree(tTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +int main() +{ + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial4D", 0); + psTraceSetLevel("VectorFitPolynomial4DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial4D", 0); + + plan_tests(60); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit"); + + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_NULL + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_NULL + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, non-clip fit. Mismatch vector types"); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + + // XXX: These tests are failing; they shouldn't be. + /* + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + */ + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_NULL + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F32 tests: Ordinary polys, clip fit. Mismatch vector types"); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit"); + // Some Vectors NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_NULL + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Some Vectors NULL"); + // F-vector NULL + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + ok(genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. F Vector NULL"); + // Mismatch vector types + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); + ok(genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false), "F64 tests: Ordinary polys, clip fit. Mismatch vector types"); +} + Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomial.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomial.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomial.c (revision 12167) @@ -0,0 +1,272 @@ +/** tst_Func00.c +* +* This routine must ensure that the psPolynomial structures are +* allocated and deallocated by the psPolynomialXXXlloc() procedures. +* It also calls the various psPolynomialXXXEval() procedures. +* +* The F32 and F64 polynomials are tested for all orders (1 - 4) and for +* both ordinary and chebyshev polynomials. +* +* NOTE: This test code requries the stdout file to verify that the results +* are good. +* +* XXX: Modify these tests so that polynomials with a variety of different +* orders are created. +* +* XXX: Compare to FLT_EPSILON +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-12-21 20:05:12 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +*****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define ORDER 3 +#define VERBOSE 0 + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + plan_tests(26); + + // This test will allocate a 1D polynomial and verify the structure allocated + { + psMemId id = psMemGetId(); + psPolynomial1D* my1DPoly = NULL; + + // Allocate polynomial + my1DPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, ORDER); + ok(my1DPoly != NULL, "1D polynomial allocated successfully"); + skip_start(my1DPoly == NULL, 3, "Skipping tests because psPolynomial1DAlloc() failed"); + + // Verify polynomial structure members set properly + ok(my1DPoly->nX == ORDER, "psPolynomial1DAlloc(): Number of terms set correctly"); + ok(my1DPoly->type == PS_POLYNOMIAL_ORD, "psPolynomial1DAlloc(): type set correctly"); + bool errorFlag = false; + for(psS32 i = 0; i < ORDER+1; i++) + { + if (my1DPoly->coeff[i] != 0.0) { + diag("Coeff[%d] %lg not as expected %lg", i, my1DPoly->coeff[i], 0.0); + errorFlag = true; + } + if (my1DPoly->coeffErr[i] != 0.0) { + diag("CoeffErr[%d] %lg not as expected %lg", i, my1DPoly->coeffErr[i], 0.0); + errorFlag = true; + } + if (my1DPoly->mask[i] != 0) { + diag("Mask[%d] %d not as expected %d", i, my1DPoly->mask[i], 0); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial1D coefficients set correctly"); + + skip_end(); + psFree(my1DPoly); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, -1) != NULL) { + diag("psPolynomial1DAlloc() Returned structure but expected NULL"); + } + } + + // This test will allocate a 2D polynomial and verify the structure allocated + { + psMemId id = psMemGetId(); + psPolynomial2D* my2DPoly = NULL; + + // Allocate polynomial + my2DPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, ORDER,ORDER+1); + ok(my2DPoly != NULL, "2D polynomial allocated successfully"); + skip_start(my2DPoly == NULL, 4, "Skipping tests because psPolynomial2DAlloc() failed"); + + // Verify polynomial structure members set properly + ok(my2DPoly->nX == ORDER, "psPolynomial2DAlloc(): Number of terms (nX) set correctly"); + ok(my2DPoly->nY == ORDER+1, "psPolynomial2DAlloc(): Number of terms (nY) set correctly"); + ok(my2DPoly->type == PS_POLYNOMIAL_ORD, "psPolynomial2DAlloc(): type set correctly"); + + bool errorFlag = false; + for(psS32 i = 0; i < ORDER+1; i++) + { + for(psS32 j = 0; j < ORDER+2; j++) { + if (fabs(my2DPoly->coeff[i][j]) > FLT_EPSILON) { + diag("Coeff[%d][%d] %lg not as expected %lg", i, j, my2DPoly->coeff[i][j], 0.0); + errorFlag = true; + } + if (my2DPoly->coeffErr[i][j] != 0.0) { + diag("CoeffErr[%d][%d] %lg not as expected %lg", i, j, my2DPoly->coeffErr[i][j], 0.0); + errorFlag = true; + } + if (my2DPoly->mask[i][j] != 0) { + diag("Mask[%d][%d] %d not as expected %d", i, j, my2DPoly->mask[i][j], 0); + errorFlag = true; + } + } + } + ok(!errorFlag, "psPolynomial2D coefficients set correctly"); + skip_end(); + psFree(my2DPoly); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, -1, 1) != NULL) { + diag("psPolynomial2DAlloc() returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 1, -1) != NULL) { + diag("psPolynomial2DAlloc() returned structure but expected NULL"); + } + } + + // This test will allocate a 3D polynomial and verify the structure allocated + { + psMemId id = psMemGetId(); + psPolynomial3D* my3DPoly = NULL; + + // Allocate polynomial + my3DPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, ORDER, ORDER+1, ORDER+2); + ok(my3DPoly != NULL, "3D polynomial allocated successfully"); + skip_start(my3DPoly == NULL, 5, "Skipping tests because psPolynomial3DAlloc() failed"); + + // Verify polynomial structure members set properly + ok(my3DPoly->nX == ORDER, "psPolynomial3DAlloc(): Number of terms (nX) set correctly"); + ok(my3DPoly->nY == ORDER+1, "psPolynomial3DAlloc(): Number of terms (nY) set correctly"); + ok(my3DPoly->nZ == ORDER+2, "psPolynomial3DAlloc(): Number of terms (nZ) set correctly"); + ok(my3DPoly->type == PS_POLYNOMIAL_ORD, "psPolynomial3DAlloc(): type set correctly"); + + bool errorFlag = false; + for(psS32 i = 0; i < ORDER+1; i++) + { + for(psS32 j = 0; j < ORDER+2; j++) { + for(psS32 k = 0; k < ORDER+3; k++) { + if (my3DPoly->coeff[i][j][k] != 0.0) { + diag("Coeff[%d][%d][%d] %lg not as expected %lg", + i, j, k, my3DPoly->coeff[i][j][k], 0.0); + errorFlag = true; + } + if (my3DPoly->coeffErr[i][j][k] != 0.0) { + diag("CoeffErr[%d][%d][%d] %lg not as expected %lg", + i, j, k, my3DPoly->coeffErr[i][j][k], 0.0); + errorFlag = true; + } + if (my3DPoly->mask[i][j][k] != 0) { + diag("Mask[%d][%d][%d] %d not as expected %d", + i, j, k, my3DPoly->mask[i][j][k], 0); + errorFlag = true; + } + } + } + } + ok(!errorFlag, "psPolynomial3D coefficients set correctly"); + skip_end(); + psFree(my3DPoly); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, -1, 1, 1) != NULL) { + diag("psPolynomial3DAlloc(): returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 1, -1, 1) != NULL) { + diag("psPolynomial3DAlloc() returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 1, 1, -1) != NULL) { + diag("psPolynomial3DAlloc(): returned structure but expected NULL"); + } + } + + // This test will allocate a 4D polynomial and verify the structure allocated + { + psMemId id = psMemGetId(); + psPolynomial4D* my4DPoly = NULL; + + // Allocate polynomial + my4DPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, ORDER,ORDER+1,ORDER+2,ORDER+3); + ok(my4DPoly != NULL, "4D polynomial allocated successfully"); + skip_start(my4DPoly == NULL, 6, "Skipping tests because psPolynomial4DAlloc() failed"); + + // Verify polynomial structure members set properly + ok(my4DPoly->nX == ORDER, "psPolynomial4DAlloc(): Number of terms (nX) set correctly"); + ok(my4DPoly->nY == ORDER+1, "psPolynomial4DAlloc(): Number of terms (nY) set correctly"); + ok(my4DPoly->nZ == ORDER+2, "psPolynomial4DAlloc(): Number of terms (nZ) set correctly"); + ok(my4DPoly->nT == ORDER+3, "psPolynomial4DAlloc(): Number of terms (nT) set correctly"); + ok(my4DPoly->type == PS_POLYNOMIAL_ORD, "psPolynomial4D Alloc(): type set correctly"); + + bool errorFlag = false; + for(psS32 i = 0; i < ORDER+1; i++) + { + for(psS32 j = 0; j < ORDER+2; j++) { + for(psS32 k = 0; k < ORDER+3; k++) { + for(psS32 l = 0; l < ORDER+4; l++) { + if (my4DPoly->coeff[i][j][k][l] != 0.0) { + diag("Coeff[%d][%d][%d][%d] %lg not as expected %lg", + i, j, k, l, my4DPoly->coeff[i][j][k][l], 0.0); + errorFlag = true; + } + if (my4DPoly->coeffErr[i][j][k][l] != 0.0) { + diag("CoeffErr[%d][%d][%d][%d] %lg not as expected %lg", + i, j, k, l, my4DPoly->coeffErr[i][j][k][l], 0.0); + errorFlag = true; + } + if (my4DPoly->mask[i][j][k][l] != 0) { + diag("Mask[%d][%d][%d][%d] %d not as expected %d", + i, j, k, l, my4DPoly->mask[i][j][k][l], 0); + errorFlag = true; + } + } + } + } + } + ok(!errorFlag, "psPolynomial4D coefficients set correctly"); + skip_end(); + psFree(my4DPoly); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, -1, 1, 1, 1) != NULL) { + diag("psPolynomial4DAlloc(): returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, -1, 1, 1) != NULL) { + diag("psPolynomial4DAlloc(): returned structure but expected NULL"); + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, 1, -1, 1) != NULL) { + diag("psPolynomial4DAlloc(): returned structure but expected NULL"); + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if (psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, 1, 1, -1) != NULL) { + diag("psPolynomial4DAlloc(): returned structure but expected NULL"); + } + } +} + Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval1D.c (revision 12167) @@ -0,0 +1,231 @@ +/** +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:49:52 $ +* +* XXX: Probably should test single- and multi-dimensional polynomials in +* which one diminsion is constant (n == 1). +* +* XXX: define ORDERS, not TERMS +* +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +psF32 poly1DCoeff[TERMS] = { -4.3, 2.3, -3.2, 1.9}; +psF64 Dpoly1DCoeff[TERMS] = { -4.3, 2.3, -3.2, 1.9}; +psF32 poly1DMask[TERMS] = { 0, 0, 1, 0 }; + +psF32 poly1DXValue[TESTPOINTS] = { 2.550000, -9.8000, 0.00134, -12.2500, 0.000}; +psF64 Dpoly1DXValue[TESTPOINTS] = { 2.550000, -9.8000, 0.00134, -12.2500, 0.000}; +psF32 poly1DXResult[TESTPOINTS] = {33.069613, -1815.1048, -4.296918, -3525.1797, -4.3000}; +psF64 Dpoly1DXResult[TESTPOINTS] = {33.069613, -1815.1048, -4.296918, -3525.1797, -4.3000}; + +psF32 poly1DXChebValue[TESTPOINTS] = { -0.99, -0.33, 0.125, 0.564, 0.875}; +psF64 Dpoly1DXChebValue[TESTPOINTS] = { -0.99, -0.33, 0.125, 0.564, 0.875}; +psF32 poly1DXChebResult[TESTPOINTS] = { -1.401196, 1.016252, 0.257813, 0.089625, 1.429688}; +psF64 Dpoly1DXChebResult[TESTPOINTS] = { -1.401196, 1.016252, 0.257813, 0.089625, 1.429688}; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(24); + + // Allocate and evaluate an ordinary polynomial structure + { + psMemId id = psMemGetId(); + + // Allocate polynomial structure + psPolynomial1D* polyOrd = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, TERMS-1); + ok(polyOrd != NULL, "Ordinary psPolynomial1D successfully allocated"); + skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial1DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + polyOrd->coeff[i] = poly1DCoeff[i]; + polyOrd->mask[i] = poly1DMask[i]; + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 result = psPolynomial1DEval(polyOrd,poly1DXValue[i]); + if (fabs(poly1DXResult[i]-result) > ERROR_TOL ) { + diag("Evaluated value %g not as expected %g", result, poly1DXResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial1DEval() successful (Ordinary)"); + skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate Cheby polynomial structure + { + bool errorFlag = false; + psMemId id = psMemGetId(); + psPolynomial1D* polyCheb = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1); + ok(polyCheb != NULL, "Chebyshev psPolynomial1D successfully allocated"); + skip_start(polyCheb == NULL, 1, "Skipping tests because psPolynomial1DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + polyCheb->coeff[i] = 1.0; + polyCheb->mask[i] = poly1DMask[i]; + } + // Evaluate test points and verify results + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 resultCheb = psPolynomial1DEval(polyCheb,poly1DXChebValue[i]); + if (fabs(poly1DXChebResult[i]-resultCheb) > ERROR_TOL ) { + diag("Evaluated value %g not as expected %g", resultCheb, poly1DXChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial1DEval() successful (Chebyshev)"); + skip_end(); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Allocate polynomial with unallowable type + // XXX: This is wierd: why the skip()? + { + psMemId id = psMemGetId(); + psPolynomial1D* polyOrd = psPolynomial1DAlloc(99, TERMS-1); + ok(polyOrd==NULL, "psPolynomial1DAlloc() returned NULL, as expected"); + skip_start(polyOrd!=NULL, 1, "Skipping tests because psPolynomial1DAlloc() failed"); + + // Attempt to evaluation invalid polynomial type + psF64 result = psPolynomial1DEval(polyOrd, 0.0); + ok(isnan(result), "psPolynomial1DEval() did not return NAN, as expected"); + skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Allocate polynomial, test the psPolynomial1DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputOrd = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputOrd->data.F64[i] = poly1DXValue[i]; + inputOrd->n++; + } + + psPolynomial1D* polyOrd = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, TERMS-1); + ok(polyOrd != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyOrd == NULL, 6, "Skipping tests because psPolynomial1DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + polyOrd->coeff[i] = poly1DCoeff[i]; + polyOrd->mask[i] = poly1DMask[i]; + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial1DEvalVector(polyOrd, inputOrd); + ok(outputOrd != NULL, "psPolynomial1DEvalVector() generated non-NULL psVector"); + ok(outputOrd->type.type == PS_TYPE_F64, "psPolynomial1DEvalVector() generated correct output type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(poly1DXResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + diag("Result[%d] %lg not equal to expected %lg", + i, outputOrd->data.F64[i], poly1DXResult[i]); + errorFlag = TRUE; + } + } + ok(!errorFlag, "psPolynomial1DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial1DEvalVector(NULL, inputOrd) == NULL, "psPolynomial1DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial1DEvalVector(polyOrd,NULL) == NULL, "psPolynomial1DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputOrd->type.type = PS_TYPE_U8; + ok(psPolynomial1DEvalVector(polyOrd,inputOrd) == NULL, "psPolynomial1DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputOrd); + skip_end(); + psFree(inputOrd); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate polynomial, test the psPolynomial1DEvalVector() routines (Chebyshev) + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputCheb = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputCheb->data.F64[i] = poly1DXChebValue[i]; + inputCheb->n++; + } + + psPolynomial1D* polyCheb = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1); + ok(polyCheb != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyCheb == NULL, 5, "Skipping tests because psPolynomial1DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + polyCheb->coeff[i] = 1.0; + polyCheb->mask[i] = poly1DMask[i]; + } + + // Evaluate the vectors + psVector* outputCheb = psPolynomial1DEvalVector(polyCheb, inputCheb); + ok(outputCheb != NULL, "psPolynomial1DEvalVector() generated non-NULL psVector"); + ok(outputCheb->type.type == PS_TYPE_F64, "psPolynomial1DEvalVector() generated correct output type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(poly1DXChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + diag("ResultCheb[%d] %lg not equal to expected %lg", + i, outputCheb->data.F64[i], poly1DXChebResult[i]); + errorFlag = TRUE; + } + } + ok(!errorFlag, "psPolynomial1DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null input vector + ok(psPolynomial1DEvalVector(polyCheb,NULL) == NULL, "psPolynomial1DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputCheb->type.type = PS_TYPE_U8; + ok(psPolynomial1DEvalVector(polyCheb,inputCheb) == NULL, "psPolynomial1DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputCheb); + skip_end(); + psFree(inputCheb); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval2D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval2D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval2D.c (revision 12167) @@ -0,0 +1,300 @@ +/** tap_psPolynomialEval2D.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:52:42 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +psF32 poly2DCoeff[TERMS][TERMS] = { { -4.3, 2.3, -3.2, 1.9}, + { 1.2, 0.7, -0.3, 1.3}, + { 0.4, -2.9, 0.8, -3.1}, + { -1.1, 2.1, 1.9, 0.6} + }; +psF64 Dpoly2DCoeff[TERMS][TERMS] = { { -4.3, 2.3, -3.2, 1.9}, + { 1.2, 0.7, -0.3, 1.3}, + { 0.4, -2.9, 0.8, -3.1}, + { -1.1, 2.1, 1.9, 0.6} + }; +psF32 poly2DMask[TERMS][TERMS] = { { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }; + +psF32 poly2DXYValue[TESTPOINTS][2] = { { 1.40, 0.55}, + { -0.55, 1.40}, + { 0.00, 2.34}, + { -0.88, 0.00}, + { 3.45, -0.78} + }; +psF32 Dpoly2DXYValue[TESTPOINTS][2] = { { 1.40, 0.55}, + { -0.55, 1.40}, + { 0.00, 2.34}, + { -0.88, 0.00}, + { 3.45, -0.78} + }; +psF32 poly2DResult[TESTPOINTS] = { -3.415938, -14.765687, -16.43992, -4.606381, -22.650702 }; +psF64 Dpoly2DResult[TESTPOINTS] = { -3.415938, -14.765687, -16.43992, -4.606381, -22.650702 }; + +psF32 poly2DXYChebValue[TESTPOINTS][2] = { { 0.500, 0.500}, + { 0.000, 0.250}, + { -0.250, 0.000}, + { 0.990, 0.150}, + { 0.333, -0.666} + }; +psF32 Dpoly2DXYChebValue[TESTPOINTS][2] = { { 0.500, 0.500}, + { 0.000, 0.250}, + { -0.250, 0.000}, + { 0.990, 0.150}, + { 0.333, -0.666} + }; +psF32 poly2DChebResult[TESTPOINTS] = { 0.750000, 1.687500, 0.625000, -0.113040, 0.386786 }; +psF32 Dpoly2DChebResult[TESTPOINTS] = { 0.750000, 1.687500, 0.625000, -0.113040, 0.386786 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(28); + + // Allocate and evaluate an ordinary polynomial structure + { + psMemId id = psMemGetId(); + + // Allocate polynomial structure + psPolynomial2D* polyOrd = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary psPolynomial2D successfully allocated"); + skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial2DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + polyOrd->coeff[i][j] = poly2DCoeff[i][j]; + polyOrd->mask[i][j] = poly2DMask[i][j]; + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 result = psPolynomial2DEval(polyOrd,Dpoly2DXYValue[i][0],Dpoly2DXYValue[i][1]); + if (fabs(Dpoly2DResult[i]-result) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated value %f, should be %f\n", result, Dpoly2DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial2DEval() successful (Ordinary)"); + skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Allocate and evaluate Cheby polynomial structure + { + psMemId id = psMemGetId(); + + // Allocate polynomial structure + psPolynomial2D* polyCheb = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Cheby psPolynomial2D successfully allocated"); + skip_start(polyCheb == NULL, 1, "Skipping tests because psPolynomial2DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + polyCheb->coeff[i][j] = 1.0; + polyCheb->mask[i][j] = poly2DMask[i][j]; + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 resultCheb = psPolynomial2DEval(polyCheb,Dpoly2DXYChebValue[i][0],Dpoly2DXYChebValue[i][1]); + if (fabs(Dpoly2DChebResult[i]-resultCheb) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated value %f, should be %f\n", resultCheb, Dpoly2DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial2DEval() successful (Chebyshev)"); + skip_end(); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Allocate polynomial with unallowed type + { + psMemId id = psMemGetId(); + psPolynomial2D* polyOrd = psPolynomial2DAlloc(99, TERMS-1, TERMS-1); + ok(polyOrd == NULL, "psPolynomial2DAlloc() returned NULL with unallowed tpye"); + // skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial2DAlloc() failed"); + // // Attempt to evaluate invalid polynomial type + // psF64 result = psPolynomial2DEval(polyOrd,0.0, 0.0); + // ok(isnan(result), "psPolynomial2DEval() did not return NAN, as expected"); + // skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Allocate polynomial, test the psPolynomial2DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputOrdX->data.F64[i] = poly2DXYValue[i][0]; + inputOrdY->data.F64[i] = poly2DXYValue[i][1]; + inputOrdX->n++; + inputOrdY->n++; + } + + psPolynomial2D* polyOrd = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyOrd == NULL, 8, "Skipping tests because psPolynomial2DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + polyOrd->coeff[i][j] = poly2DCoeff[i][j]; + polyOrd->mask[i][j] = poly2DMask[i][j]; + } + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial2DEvalVector(polyOrd, inputOrdX, inputOrdY); + ok(outputOrd != NULL, "psPolynomial2DEvalVector() generated non-NULL psVector"); + ok(outputOrd->type.type == PS_TYPE_F64, "psPolynomial2DEvalVector() generated correct type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(poly2DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: Result[%d] %lg not equal to expected %lg.\n", + i, outputOrd->data.F64[i], poly2DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial2DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial2DEvalVector(NULL, inputOrdX, inputOrdY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial2DEvalVector(polyOrd,NULL,inputOrdY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial2DEvalVector(polyOrd,inputOrdX,NULL) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputOrdX->type.type = PS_TYPE_U8; + ok(psPolynomial2DEvalVector(polyOrd,inputOrdX,inputOrdY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdY->type.type = PS_TYPE_U8; + ok(psPolynomial2DEvalVector(polyOrd,inputOrdX, inputOrdY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputOrd); + skip_end(); + psFree(inputOrdX); + psFree(inputOrdY); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + + } + + + + + + // Allocate polynomial, test the psPolynomial2DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputChebX->data.F64[i] = poly2DXYChebValue[i][0]; + inputChebY->data.F64[i] = poly2DXYChebValue[i][1]; + inputChebX->n++; + inputChebY->n++; + } + + psPolynomial2D* polyCheb = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Cheby polynomial allocation successful"); + skip_start(polyCheb == NULL, 8, "Skipping tests because psPolynomial2DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + polyCheb->coeff[i][j] = 1.0; + polyCheb->mask[i][j] = poly2DMask[i][j]; + } + } + + // Evaluate the vectors + psVector* outputCheb = psPolynomial2DEvalVector(polyCheb, inputChebX, inputChebY); + ok(outputCheb != NULL, "psPolynomial2DEvalVector() generated non-NULL psVector"); + ok(outputCheb->type.type == PS_TYPE_F64, "psPolynomial2DEvalVector() generated correct type"); + + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(poly2DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg.\n", + i, outputCheb->data.F64[i], poly2DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial2DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial2DEvalVector(NULL, inputChebX, inputChebY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial2DEvalVector(polyCheb,NULL,inputChebY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial2DEvalVector(polyCheb,inputChebX,NULL) == NULL, "psPolynomial2DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputChebX->type.type = PS_TYPE_U8; + ok(psPolynomial2DEvalVector(polyCheb,inputChebX,inputChebY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with non F64 input vector"); + inputChebX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebY->type.type = PS_TYPE_U8; + ok(psPolynomial2DEvalVector(polyCheb,inputChebX, inputChebY) == NULL, "psPolynomial2DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputCheb); + skip_end(); + psFree(inputChebX); + psFree(inputChebY); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval3D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval3D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval3D.c (revision 12167) @@ -0,0 +1,387 @@ +/** tap_psPolynomialEval3D.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:52:42 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +psF32 poly3DCoeff[TERMS][TERMS][TERMS] = { { { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }; +psF64 Dpoly3DCoeff[TERMS][TERMS][TERMS] = { { { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }; + + +psF32 poly3DMask[TERMS][TERMS][TERMS] = { { { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + }; + +psF32 poly3DXYZValue[TESTPOINTS][3] = { { 0.450, -0.780, 0.500}, + { 0.297, 0.153, -0.354}, + { 0.000, 0.153, -0.354}, + { 0.297, 0.000, -0.354}, + { 0.297, 0.153, 0.000} + }; +psF64 Dpoly3DXYZValue[TESTPOINTS][3] = { { 0.450, -0.780, 0.500}, + { 0.297, 0.153, -0.354}, + { 0.000, 0.153, -0.354}, + { 0.297, 0.000, -0.354}, + { 0.297, 0.153, 0.000} + }; +psF32 poly3DResult[TESTPOINTS] = { -1.298691, -2.011591, -1.359247, -2.548266, -1.139072}; +psF64 Dpoly3DResult[TESTPOINTS] = { -1.298691, -2.011591, -1.359247, -2.548266, -1.139072}; + + +psF32 poly3DXYZChebValue[TESTPOINTS][3] = { { 0.000, 0.250, -0.250}, + { -0.250, 0.000, 0.250}, + { 0.250, -0.250, 0.000}, + { 0.100, -0.300, -0.400}, + { 0.990, -0.010, 0.500} + }; +psF64 Dpoly3DXYZChebValue[TESTPOINTS][3] = { { 0.000, 0.250, -0.250}, + { -0.250, 0.000, 0.250}, + { 0.250, -0.250, 0.000}, + { 0.100, -0.300, -0.400}, + { 0.990, -0.010, 0.500} + }; +psF32 poly3DChebResult[TESTPOINTS] = { 1.230469, 1.687500, 0.187500, -1.452707, 2.032344 }; +psF64 Dpoly3DChebResult[TESTPOINTS] = { 1.230469, 1.687500, 0.187500, -1.452707, 2.032344 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(32); + + // Allocate and evaluate an ordinary polynomial structure + { + psMemId id = psMemGetId(); + + // Allocate polynomial structure + psPolynomial3D* polyOrd = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary psPolynomial3D successfully allocated"); + skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial3DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyOrd->coeff[i][j][k] = Dpoly3DCoeff[i][j][k]; + polyOrd->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 result = psPolynomial3DEval(polyOrd,Dpoly3DXYZValue[i][0],Dpoly3DXYZValue[i][1], + Dpoly3DXYZValue[i][2]); + if (fabs(Dpoly3DResult[i]-result) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated value %lg not as expected %lg.\n", + result, Dpoly3DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEval() successful (Ordinary)"); + + psFree(polyOrd); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate and evaluate Cheby polynomial structure + { + psMemId id = psMemGetId(); + + // Allocate polynomial structure + psPolynomial3D* polyCheb = psPolynomial3DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Ordinary psPolynomial3D successfully allocated"); + skip_start(polyCheb == NULL, 1, "Skipping tests because psPolynomial3DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyCheb->coeff[i][j][k] = 1.0; + polyCheb->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 resultCheb = psPolynomial3DEval(polyCheb,Dpoly3DXYZChebValue[i][0],Dpoly3DXYZChebValue[i][1], + Dpoly3DXYZChebValue[i][2]); + if (fabs(Dpoly3DChebResult[i]-resultCheb) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated Chebyshev value %lg not as expected %lg.\n", + resultCheb, Dpoly3DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEval() successful (Cheby)"); + + psFree(polyCheb); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + + // Allocate polynomial with unallowed type + // XXX: This is odd. + { + psMemId id = psMemGetId(); + psPolynomial3D* polyOrd = psPolynomial3DAlloc(99, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd == NULL, "psPolynomial3DAlloc() returned NULL with unallowed type"); + // skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial3DAlloc() failed"); + // // Attempt to evaluation invalid polynomial type + // psF64 result = psPolynomial3DEval(polyOrd,0.0, 0.0, 0.0); + // ok(isnan(result), "psPolynomial3DEval() did not return NAN, as expected"); + // skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + + } + + // Allocate polynomial, test the psPolynomial3DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputOrdX->data.F64[i] = Dpoly3DXYZValue[i][0]; + inputOrdY->data.F64[i] = Dpoly3DXYZValue[i][1]; + inputOrdZ->data.F64[i] = Dpoly3DXYZValue[i][2]; + inputOrdX->n++; + inputOrdY->n++; + inputOrdZ->n++; + } + + psPolynomial3D* polyOrd = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyOrd == NULL, 10, "Skipping tests because psPolynomial3DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyOrd->coeff[i][j][k] = Dpoly3DCoeff[i][j][k]; + polyOrd->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ); + ok(outputOrd != NULL, "psPolynomial3DEvalVector() generated non-NULL psVector"); + ok(outputOrd->type.type == PS_TYPE_F64, "psPolynomial3DEvalVector() generated correct type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(Dpoly3DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: Result[%d] %lg not equal to expected %lg.\n", + i, outputOrd->data.F64[i], Dpoly3DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial3DEvalVector(NULL,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyOrd,NULL,inputOrdY,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyOrd,inputOrdX,NULL,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,NULL) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputOrdX->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdY->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdY->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdZ->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputOrd); + skip_end(); + psFree(inputOrdX); + psFree(inputOrdY); + psFree(inputOrdZ); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + + + // Allocate polynomial, test the psPolynomial3DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputChebX->data.F64[i] = Dpoly3DXYZChebValue[i][0]; + inputChebY->data.F64[i] = Dpoly3DXYZChebValue[i][1]; + inputChebZ->data.F64[i] = Dpoly3DXYZChebValue[i][2]; + inputChebX->n++; + inputChebY->n++; + inputChebZ->n++; + } + psPolynomial3D* polyCheb = psPolynomial3DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyCheb == NULL, 10, "Skipping tests because psPolynomial3DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyCheb->coeff[i][j][k] = 1.0; + polyCheb->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + + // Evaluate the vectors + psVector* outputCheb = psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,inputChebZ); + ok(outputCheb != NULL, "psPolynomial3DEvalVector() generated non-NULL psVector"); + ok(outputCheb->type.type == PS_TYPE_F64, "psPolynomial3DEvalVector() generated correct type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(Dpoly3DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg.\n", + i, outputCheb->data.F64[i], Dpoly3DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial3DEvalVector(NULL,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyCheb,NULL,inputChebY,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyCheb,inputChebX,NULL,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,NULL) == NULL, "psPolynomial3DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputChebX->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + inputChebX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebY->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + inputChebY->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebZ->type.type = PS_TYPE_U8; + ok(psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial3DEvalVector() produced NULL when called with non F64 input vector"); + psFree(outputCheb); + skip_end(); + psFree(inputChebX); + psFree(inputChebY); + psFree(inputChebZ); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} + Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval4D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval4D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomialEval4D.c (revision 12167) @@ -0,0 +1,658 @@ +/** tst_psFunc11.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:49:52 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +psF32 poly4DCoeff[TERMS][TERMS][TERMS][TERMS] = { + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + } + }; +psF64 Dpoly4DCoeff[TERMS][TERMS][TERMS][TERMS] = { + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + } + }; + +psF32 poly4DMask[TERMS][TERMS][TERMS][TERMS] = { + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + } + }; + +psF32 poly4DWXYZValue[TESTPOINTS][4] = { + { 0.450, -0.780, 0.500, -0.123}, + { 0.297, 0.153, -0.354, 0.000}, + { 0.000, 0.153, -0.354, 0.321}, + { 0.297, 0.000, -0.354, 0.321}, + { 0.297, 0.153, 0.000, 0.321} + }; +psF64 Dpoly4DWXYZValue[TESTPOINTS][4] = { + { 0.450, -0.780, 0.500, -0.123}, + { 0.297, 0.153, -0.354, 0.000}, + { 0.000, 0.153, -0.354, 0.321}, + { 0.297, 0.000, -0.354, 0.321}, + { 0.297, 0.153, 0.000, 0.321} + }; + +psF32 poly4DResult[TESTPOINTS] = { -3.588753, -2.439566, -1.175955, -1.645497, -1.216915}; +psF64 Dpoly4DResult[TESTPOINTS] = { -3.588753, -2.439566, -1.175955, -1.645497, -1.216915}; + +psF32 poly4DWXYZChebValue[TESTPOINTS][4] = { + { 0.100, 0.000, 0.250, -0.250}, + { 0.100, -0.250, 0.000, 0.250}, + { 0.100, 0.250, -0.250, 0.000}, + { 0.300, 0.200, -0.300, -0.400}, + { -0.780, 0.990, -0.010, 0.500} + }; +psF64 Dpoly4DWXYZChebValue[TESTPOINTS][4] = { + { 0.100, 0.000, 0.250, -0.250}, + { 0.100, -0.250, 0.000, 0.250}, + { 0.100, 0.250, -0.250, 0.000}, + { 0.300, 0.200, -0.300, -0.400}, + { -0.780, 0.990, -0.010, 0.500} + }; +psF32 poly4DChebResult[TESTPOINTS] = { -0.216563, -0.297000, -0.033000, 0.432198, 1.785601 }; +psF64 Dpoly4DChebResult[TESTPOINTS] = { -0.216563, -0.297000, -0.033000, 0.432198, 1.785601 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(37); + + // Allocate and evaluate an ordinary polynomial structure + { + psMemId id = psMemGetId(); + // Allocate polynomial structure + psPolynomial4D* polyOrd = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary psPolynomial4D successfully allocated"); + skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial4DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyOrd->coeff[i][j][k][l] = Dpoly4DCoeff[i][j][k][l]; + polyOrd->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 result = psPolynomial4DEval(polyOrd, Dpoly4DWXYZValue[i][0], Dpoly4DWXYZValue[i][1], + Dpoly4DWXYZValue[i][2], Dpoly4DWXYZValue[i][3]); + if (fabs(Dpoly4DResult[i]-result) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated value %lg not as expected %lg.\n", + result, Dpoly4DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEval() successful (Ordinary)"); + + psFree(polyOrd); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate and evaluate an ordinary polynomial structure + { + psMemId id = psMemGetId(); + // Allocate polynomial structure + psPolynomial4D* polyCheb = psPolynomial4DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Ordinary psPolynomial4D successfully allocated"); + skip_start(polyCheb == NULL, 1, "Skipping tests because psPolynomial4DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyCheb->coeff[i][j][k][l] = 1.0; + polyCheb->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Evaluate test points and verify results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + psF64 resultCheb = psPolynomial4DEval(polyCheb, Dpoly4DWXYZChebValue[i][0], Dpoly4DWXYZChebValue[i][1], + Dpoly4DWXYZChebValue[i][2], Dpoly4DWXYZChebValue[i][3]); + if (fabs(Dpoly4DChebResult[i]-resultCheb) > ERROR_TOL ) { + diag("TEST ERROR: Evaluated Chebyshev value %lg not as expected %lg.\n", + resultCheb, Dpoly4DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial3DEval() successful (Ordinary)"); + + psFree(polyCheb); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // XXX: This is wierd: why the skip()? + // Allocate polynomial with unallowed type + { + psMemId id = psMemGetId(); + psPolynomial4D* polyOrd = psPolynomial4DAlloc(99, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd == NULL, "Ordinary polynomial allocation successful"); + skip_start(polyOrd == NULL, 1, "Skipping tests because psPolynomial4DAlloc() failed"); + + // Attempt to evaluation invalid polynomial type + psF64 result = psPolynomial4DEval(polyOrd,0.0, 0.0, 0.0, 0.0); + ok(isnan(result), "psPolynomial3DEval() did not return NAN, as expected"); + skip_end(); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate polynomial, test the psPolynomial4DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputOrdW = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputOrdW->data.F64[i] = Dpoly4DWXYZValue[i][0]; + inputOrdX->data.F64[i] = Dpoly4DWXYZValue[i][1]; + inputOrdY->data.F64[i] = Dpoly4DWXYZValue[i][2]; + inputOrdZ->data.F64[i] = Dpoly4DWXYZValue[i][3]; + inputOrdW->n++; + inputOrdX->n++; + inputOrdY->n++; + inputOrdZ->n++; + } + + // Allocate polynomial + psPolynomial4D* polyOrd = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + ok(polyOrd != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyOrd == NULL, 12, "Skipping tests because psPolynomial4DAlloc() failed"); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyOrd->coeff[i][j][k][l] = Dpoly4DCoeff[i][j][k][l]; + polyOrd->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ); + ok(outputOrd != NULL, "psPolynomial4DEvalVector() generated non-NULL psVector"); + ok(outputOrd->type.type == PS_TYPE_F64, "psPolynomial4DEvalVector() generated correct type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(Dpoly4DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: Result[%d] %lg not equal to expected %lg", + i, outputOrd->data.F64[i], Dpoly4DResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial4DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial4DEvalVector(NULL,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyOrd,NULL,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,NULL,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,NULL,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,NULL) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputOrdX->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdY->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdY->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdZ->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdZ->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputOrdW->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputOrdW->type.type = PS_TYPE_F64; + psFree(outputOrd); + skip_end(); + psFree(inputOrdX); + psFree(inputOrdY); + psFree(inputOrdZ); + psFree(inputOrdW); + psFree(polyOrd); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Allocate polynomial, test the psPolynomial4DEvalVector() routines + { + psMemId id = psMemGetId(); + // Create input vectors + psVector* inputChebW = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) + { + inputChebW->data.F64[i] = Dpoly4DWXYZChebValue[i][0]; + inputChebX->data.F64[i] = Dpoly4DWXYZChebValue[i][1]; + inputChebY->data.F64[i] = Dpoly4DWXYZChebValue[i][2]; + inputChebZ->data.F64[i] = Dpoly4DWXYZChebValue[i][3]; + inputChebW->n++; + inputChebX->n++; + inputChebY->n++; + inputChebZ->n++; + } + + // Allocate polynomial + psPolynomial4D* polyCheb = psPolynomial4DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + ok(polyCheb != NULL, "Ordinary polynomial allocation successful"); + skip_start(polyCheb == NULL, 12, "Skipping tests because psPolynomial4DAlloc() failed"); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) + { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyCheb->coeff[i][j][k][l] = 1.0; + polyCheb->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Evaluate the vectors + psVector* outputCheb = psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ); + ok(outputCheb != NULL, "psPolynomial4DEvalVector() generated non-NULL psVector"); + ok(outputCheb->type.type == PS_TYPE_F64, "psPolynomial4DEvalVector() generated correct type"); + + // Verify the results + bool errorFlag = false; + for(psS32 i = 0; i < TESTPOINTS; i++) + { + if (fabs(Dpoly4DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + diag("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg", + i, outputCheb->data.F64[i], Dpoly4DChebResult[i]); + errorFlag = true; + } + } + ok(!errorFlag, "psPolynomial4DEvalVector() produced the correct answers"); + + // Attempt to invoke function with null polynomial + ok(psPolynomial4DEvalVector(NULL,inputChebW,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL polynomial"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyCheb,NULL,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,NULL,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,NULL,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with null input vector + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,NULL) == NULL, "psPolynomial4DEvalVector() produced NULL when called with NULL input vector"); + + // Attempt to invoke function with a non F64 type input vector + inputChebX->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputChebX->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebY->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputChebY->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebZ->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputChebZ->type.type = PS_TYPE_F64; + + // Attempt to invoke function with a non F64 type input vector + inputChebW->type.type = PS_TYPE_U8; + ok(psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ) == NULL, "psPolynomial4DEvalVector() produced NULL when called with non F64 input vector"); + inputChebW->type.type = PS_TYPE_F64; + psFree(outputCheb); + skip_end(); + psFree(inputChebW); + psFree(inputChebX); + psFree(inputChebY); + psFree(inputChebZ); + psFree(polyCheb); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psPolynomialUtils_Derivatives.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psPolynomialUtils_Derivatives.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psPolynomialUtils_Derivatives.c (revision 12167) @@ -0,0 +1,276 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(54); + + note("psPolynomial2D Derivative tests"); + + // test psPolynomial2D_dX (no supplied output) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dX (no supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dx = 2 - 6x + 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *dX = psPolynomial2D_dX (NULL, poly); + + ok(dX->nX == 1, "new x order is %d", dX->nX); + ok(dX->nY == 2, "new y order is %d", dX->nY); + + ok_float(dX->coeff[0][0], +2.0, "x^0 y^0 coeff is %f", dX->coeff[0][0]); + ok_float(dX->coeff[1][0], -6.0, "x^1 y^0 coeff is %f", dX->coeff[1][0]); + ok_float(dX->coeff[0][1], +4.0, "x^0 y^1 coeff is %f", dX->coeff[0][1]); + + ok(!dX->mask[0][0], "x^0 y^0 coeff is unmasked"); + ok(!dX->mask[1][0], "x^1 y^0 coeff is unmasked"); + ok(!dX->mask[0][1], "x^0 y^1 coeff is unmasked"); + + ok(dX->mask[1][1], "x^1 y^1 coeff is masked"); + ok(dX->mask[1][2], "x^1 y^2 coeff is masked"); + + psFree (dX); + psFree (poly); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psPolynomial2D_dX (supplied output) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dX (supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dx = 2 - 6x + 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *dX = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + psPolynomial2D_dX (dX, poly); + + ok(dX->nX == 1, "new x order is %d", dX->nX); + ok(dX->nY == 2, "new y order is %d", dX->nY); + + ok_float(dX->coeff[0][0], +2.0, "x^0 y^0 coeff is %f", dX->coeff[0][0]); + ok_float(dX->coeff[1][0], -6.0, "x^1 y^0 coeff is %f", dX->coeff[1][0]); + ok_float(dX->coeff[0][1], +4.0, "x^0 y^1 coeff is %f", dX->coeff[0][1]); + + ok(!dX->mask[0][0], "x^0 y^0 coeff is unmasked"); + ok(!dX->mask[1][0], "x^1 y^0 coeff is unmasked"); + ok(!dX->mask[0][1], "x^0 y^1 coeff is unmasked"); + + ok(dX->mask[1][1], "x^1 y^1 coeff is masked"); + ok(dX->mask[1][2], "x^1 y^2 coeff is masked"); + + psFree (dX); + psFree (poly); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psPolynomial2D_dX (inPlace: supplied output == supplied input) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dX (supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dx = 2 - 6x + 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *result = psPolynomial2D_dX (poly, poly); + ok (result == NULL, "psPolynomial2D_dX failed as expected: cannot assign output to input"); + + psFree (poly); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psPolynomial2D_dY (no supplied output) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dY (no supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dy = 3 + 4x - 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *dY = psPolynomial2D_dY (NULL, poly); + + ok(dY->nX == 2, "new x order is %d", dY->nX); + ok(dY->nY == 1, "new y order is %d", dY->nY); + + ok_float(dY->coeff[0][0], +3.0, "x^0 y^0 coeff is %f", dY->coeff[0][0]); + ok_float(dY->coeff[1][0], +4.0, "x^1 y^0 coeff is %f", dY->coeff[1][0]); + ok_float(dY->coeff[0][1], -4.0, "x^0 y^1 coeff is %f", dY->coeff[0][1]); + + ok(!dY->mask[0][0], "x^0 y^0 coeff is unmasked"); + ok(!dY->mask[1][0], "x^1 y^0 coeff is unmasked"); + ok(!dY->mask[0][1], "x^0 y^1 coeff is unmasked"); + + ok(dY->mask[1][1], "x^1 y^1 coeff is masked"); + ok(dY->mask[1][2], "x^1 y^2 coeff is masked"); + + psFree (dY); + psFree (poly); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psPolynomial2D_dY (supplied output) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dY (supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dy = 3 + 4x - 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *dY = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + psPolynomial2D_dY (dY, poly); + + ok(dY->nX == 2, "new x order is %d", dY->nX); + ok(dY->nY == 1, "new y order is %d", dY->nY); + + ok_float(dY->coeff[0][0], +3.0, "x^0 y^0 coeff is %f", dY->coeff[0][0]); + ok_float(dY->coeff[1][0], +4.0, "x^1 y^0 coeff is %f", dY->coeff[1][0]); + ok_float(dY->coeff[0][1], -4.0, "x^0 y^1 coeff is %f", dY->coeff[0][1]); + + ok(!dY->mask[0][0], "x^0 y^0 coeff is unmasked"); + ok(!dY->mask[1][0], "x^1 y^0 coeff is unmasked"); + ok(!dY->mask[0][1], "x^0 y^1 coeff is unmasked"); + + ok(dY->mask[1][1], "x^1 y^1 coeff is masked"); + ok(dY->mask[1][2], "x^1 y^2 coeff is masked"); + + psFree (dY); + psFree (poly); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psPolynomial2D_dY (supplied output) + { + psMemId id = psMemGetId(); + + note ("test psPolynomial2D_dY (supplied output)"); + + psPolynomial2D *poly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 2); + ok(poly != NULL, "psPolynomial2D successfully allocated"); + skip_start(poly == NULL, 5, "Skipping tests because psPolynomial2DAlloc() failed"); + + // build sample polynomial (upper-left elements only) + // z = 5 + 2x + 3y - 3x^2 + 4xy - 2y^2 + // dz/dy = 3 + 4x - 4y + poly->coeff[0][0] = 5.0; + poly->coeff[1][0] = 2.0; + poly->coeff[0][1] = 3.0; + poly->coeff[2][0] = -3.0; + poly->coeff[1][1] = 4.0; + poly->coeff[0][2] = -2.0; + + // mask remaining elements + poly->mask[2][1] = 1; + poly->mask[1][2] = 1; + poly->mask[2][2] = 1; + + psPolynomial2D *result = psPolynomial2D_dY (poly, poly); + ok (result == NULL, "psPolynomial2D_dY failed as expected: cannot assign output to input"); + + psFree (poly); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/math/tap_psRandom.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psRandom.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psRandom.c (revision 12167) @@ -0,0 +1,378 @@ +/***************************************************************************** +This routine must ensure that the various random number generator functions +work properly. + + ensure that psRandom structs are properly allocated by psRandomAlloc(). + ensure that psRandomUniform() produces a sequence of numbers with + proper mean and stdev. + ensure that psRandomGaussian() produces a sequence of numbers with + proper mean and stdev. + ensure that psRandomPoisson() produces a sequence of numbers with + proper mean and stdev. + ensure that psRandomReset() properly seeds the random number + generator for psRandomUniform(). + ensure that psRandomReset() properly seeds the random number + generator for psRandomGaussian(). + ensure that psRandomReset() properly seeds the random number + generator for psRandomPoisson(). + +XXX: I removed a test that generated error output. How should we test that? + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#include +#include +#include + +#define NUM_DATA 10000 +#define SEED 54321 +#define SEED2 345 +#define UNIFORM_MEAN 0.5 +#define UNIFORM_STDEV 0.3 +#define GAUSSIAN_MEAN 0.0 +#define GAUSSIAN_STDEV 1.0 +#define POISSON_MEAN 15.0 +#define POISSON_STDEV (POISSON_MEAN / 4) +#define ERROR_TOLERANCE 0.2 +#define VERBOSE 0 +# define ok_float_tol_per(VALUE,EXPECT,TOL,COMMENT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < (TOL)), COMMENT, ## __VA_ARGS__); + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + plan_tests(34); + + diag("ensure that psRandom structs are properly allocated by psRandomAlloc()"); + // ensure that psRandom structs are properly allocated by psRandomAlloc() + { + psMemId id = psMemGetId(); + // Valid type allocation + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 1, "Skipping tests because psRandomAlloc() failed"); + ok(myRNG->type == PS_RANDOM_TAUS, "psRandomAlloc() set type properly"); + psFree(myRNG); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Unallowed type allocation + { + psMemId id = psMemGetId(); + psRandom *myRNG = psRandomAlloc(100,SEED); + ok(myRNG == NULL, "psRandomAlloc() refused to generate psRandom with unallowed type"); + psFree(myRNG); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Negative seed value + { + psMemId id = psMemGetId(); + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS,-5); + ok(myRNG != NULL, "psRandomAlloc() allows negative seed"); + psFree(myRNG); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // testRandomUniform(void) + { + diag("testRandomUniform()"); + psMemId id = psMemGetId(); + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 2, "Skipping tests because psRandomAlloc() failed"); + + // Initialize vector data with random number + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans->data.F64[i] = psRandomUniform(myRNG); + } + + // Perform vector stats on random data (mean, stdev) + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + + // Verify mean and stdev + ok_float_tol_per(stats->sampleMean, UNIFORM_MEAN, ERROR_TOLERANCE, "Mean is within expected range"); + ok_float_tol_per(stats->sampleStdev, UNIFORM_STDEV, ERROR_TOLERANCE, "StDev is within expected range"); + + skip_end(); + + psFree(myRNG); + psFree(rans); + psFree(stats); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Ensure psRandomUniform() returns 0 for NULL psRandom struct + { + psMemId id = psMemGetId(); + ok(psRandomUniform(NULL) == 0, "Ensure psRandomUniform() returns 0 for NULL psRandom struct"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // testRandomGaussian(void) + { + diag("testRandomGaussian()"); + psMemId id = psMemGetId(); + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 2, "Skipping tests because psRandomAlloc() failed"); + + // Initialize vector with random data + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans->data.F64[i] = psRandomGaussian(myRNG); + } + + // Perform vector stats on data (mean, stdev) + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + + // Verify mean and stdev + ok_float_tol_per(stats->sampleMean, GAUSSIAN_MEAN, ERROR_TOLERANCE, "Mean is within expected range"); + ok_float_tol_per(stats->sampleStdev, GAUSSIAN_STDEV, ERROR_TOLERANCE, "StDev is within expected range"); + + skip_end(); + + psFree(myRNG); + psFree(rans); + psFree(stats); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Ensure psRandomGaussian() returns 0 for NULL psRandom struct + { + psMemId id = psMemGetId(); + ok(psRandomGaussian(NULL) == 0, "Ensure psRandomGaussian() returns 0 for NULL psRandom struct"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testRandomPoisson(void) + { + diag("testRandomPoisson()"); + psMemId id = psMemGetId(); + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 2, "Skipping tests because psRandomAlloc() failed"); + + // Initialize vector with random data + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + + // Perform vector stats on random data (mean, stdev) + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + // Verify mean and stdev + ok_float_tol_per(stats->sampleMean, POISSON_MEAN, ERROR_TOLERANCE, "Mean is within expected range"); + ok_float_tol_per(stats->sampleStdev, POISSON_STDEV, ERROR_TOLERANCE, "StDev is within expected range"); + + skip_end(); + + psFree(myRNG); + psFree(rans); + psFree(stats); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Ensure psRandomPoisson() returns 0 for NULL psRandom struct + { + psMemId id = psMemGetId(); + ok(psRandomPoisson(NULL, POISSON_MEAN) == 0, "Ensure psRandomPoisson() returns 0 for NULL psRandom struct"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // testRandomResetUniform(void) + { + diag("testRandomUniform(): ensure the seed resets properly"); + psMemId id = psMemGetId(); + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 1, "Skipping tests because psRandomAlloc() failed"); + + + // Random reset + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans00->data.F64[i] = psRandomUniform(myRNG); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans01->data.F64[i] = psRandomUniform(myRNG); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans02->data.F64[i] = psRandomUniform(myRNG); + } + + // Verify reset to original seed produces same results + psBool errorFlag = false; + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + if (VERBOSE) { + psError(PS_ERR_UNKNOWN,true,"psRandomUniform did not produce the same results with the same seed"); + } + errorFlag = true; + } + } + ok(!errorFlag, "psRandomUniform() produced the same results with the same seed"); + skip_end(); + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // XXX: How to test the proper generation of error messages? + if (0) { + psRandom *myRNG1 = NULL; + myRNG1 = psRandomAlloc(PS_RANDOM_TAUS, SEED); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(0); + psRandomReset(myRNG1,0); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(2); + psFree(myRNG1); + + psLogMsg(__func__,PS_LOG_INFO,"Reset a NULL psRandom variable, should generate an error message"); + psRandomReset(NULL,SEED); + } + + // testRandomResetGaussian(void) + { + diag("testRandomGaussian(): ensure the seed resets properly"); + psMemId id = psMemGetId(); + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 1, "Skipping tests because psRandomAlloc() failed"); + + + // Initialize random data in vectors + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans00->data.F64[i] = psRandomGaussian(myRNG); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans01->data.F64[i] = psRandomGaussian(myRNG); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans02->data.F64[i] = psRandomGaussian(myRNG); + } + + // Verify data from original seed produces same data after reset + psBool errorFlag = false; + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + if (VERBOSE) { + psError(PS_ERR_UNKNOWN,true,"psRandomGaussian did not produce the same results with the same seed"); + } + errorFlag = true; + } + } + ok(!errorFlag, "psRandomUniform() produced the same results with the same seed"); + skip_end(); + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testRandomResetPoisson(void) + { + diag("testRandomPoisson(): ensure the seed resets properly"); + psMemId id = psMemGetId(); + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + psRandom *myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + ok(myRNG != NULL, "psRandom struct was allocated properly"); + skip_start(myRNG == NULL, 1, "Skipping tests because psRandomAlloc() failed"); + + // Initialize vectors with random data + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans00->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans01->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + rans02->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + + // Verify the original seed produces same data after reset + psBool errorFlag = false; + for (psS32 i = 0 ; i < NUM_DATA ; i++) + { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + if (VERBOSE) { + psError(PS_ERR_UNKNOWN,true,"psRandomPoisson did not produce the same results with the same seed"); + } + errorFlag = true; + } + } + ok(!errorFlag, "psRandomUniform() produced the same results with the same seed"); + skip_end(); + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psSparse.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psSparse.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psSparse.c (revision 12167) @@ -0,0 +1,404 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(26); + + diag("psSparse() tests"); + + // test psSparseSolve for a simple normal example matrix + { + psMemId id = psMemGetId(); + + diag ("solve a normalized matrix equation with psSparseSolve"); + + // the basic equation is Ax = b + + // create a matrix A with diagonals of 1 and a small number of off diagonal elements. + // construct a vector x, construct the corresponding vector b by multiplication. solve + // Ax = b for x using psSparseSolve. compare with the input values for x. + + psSparse *matrix = psSparseAlloc (100, 100); + ok(matrix != NULL, "psSparse successfully allocated"); + skip_start(matrix == NULL, 5, "Skipping tests because psSparseAlloc() failed"); + + for (int i = 0; i < 100; i++) + { + psSparseMatrixElement (matrix, i, i, 1.0); + if (i + 1 < 100) { + psSparseMatrixElement (matrix, i + 1, i, 0.1); + } + } + + // incoming matrix elements do not need to be in order; sort before + // applying sparse matrix + psSparseResort (matrix); + + psVector *xRef = psVectorAlloc (100, PS_TYPE_F32); + for (int i = 0; i < 100; i++) + { + xRef->data.F32[i] = 1.0; + } + + psVector *bVec = psSparseMatrixTimesVector (NULL, matrix, xRef); + + for (int i = 0; i < 100; i++) + { + psSparseVectorElement (matrix, i, bVec->data.F32[i]); + } + + psSparseConstraint constraint; + constraint.paramMin = 0.0; + constraint.paramMax = 1e8; + constraint.paramDelta = 1e8; + + // solve for normalization terms (need include local sky?) + psVector *xFit = psSparseSolve (NULL, constraint, matrix, 4); + + // measure stdev between xFit and xRes + float dS = 0; + float dS2 = 0; + for (int i = 0; i < 100; i++) + { + float dX = xRef->data.F32[i] - xFit->data.F32[i]; + // fprintf (stderr, "%5.3f %5.3f %5.3f %5.3f\n", bVec->data.F32[i], xRef->data.F32[i], xFit->data.F32[i], dX); + dS2 += PS_SQR(dX); + dS += dX; + } + dS /= 100.0; + dS2 = sqrt (dS2/100.0 - dS*dS); + + ok_float_tol (dS2, 0.0, 1e-4, "scatter: %.20f", dS2); + + psFree (matrix); + psFree (xRef); + psFree (bVec); + psFree (xFit); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psSparseSolve for a simple non-normal example matrix + { + psMemId id = psMemGetId(); + + diag ("solve a non-normalized matrix equation with psSparseSolve"); + + // the basic equation is Ax = b + + // create a matrix A with diagonals of 1 and a small number of off diagonal elements. + // construct a vector x, construct the corresponding vector b by multiplication. solve + // Ax = b for x using psSparseSolve. compare with the input values for x. + + psSparse *matrix = psSparseAlloc (100, 100); + ok(matrix != NULL, "psSparse successfully allocated"); + skip_start(matrix == NULL, 5, "Skipping tests because psSparseAlloc() failed"); + + for (int i = 0; i < 100; i++) + { + psSparseMatrixElement (matrix, i, i, 5.0); + if (i + 1 < 100) { + psSparseMatrixElement (matrix, i + 1, i, 0.1); + } + } + + // incoming matrix elements do not need to be in order; sort before + // applying sparse matrix + psSparseResort (matrix); + + psVector *xRef = psVectorAlloc (100, PS_TYPE_F32); + for (int i = 0; i < 100; i++) + { + xRef->data.F32[i] = 1.0; + } + + psVector *bVec = psSparseMatrixTimesVector (NULL, matrix, xRef); + + for (int i = 0; i < 100; i++) + { + psSparseVectorElement (matrix, i, bVec->data.F32[i]); + } + + psSparseConstraint constraint; + constraint.paramMin = 0.0; + constraint.paramMax = 1e8; + constraint.paramDelta = 1e8; + + // solve for normalization terms (need include local sky?) + psVector *xFit = psSparseSolve (NULL, constraint, matrix, 4); + + // measure stdev between xFit and xRes + float dS = 0; + float dS2 = 0; + for (int i = 0; i < 100; i++) + { + float dX = xRef->data.F32[i] - xFit->data.F32[i]; + // fprintf (stderr, "%5.3f %5.3f %5.3f %5.3f\n", bVec->data.F32[i], xRef->data.F32[i], xFit->data.F32[i], dX); + dS2 += PS_SQR(dX); + dS += dX; + } + dS /= 100.0; + dS2 = sqrt (dS2/100.0 - dS*dS); + + ok_float_tol (dS2, 0.0, 1e-4, "scatter: %.20f", dS2); + + psFree (matrix); + psFree (xRef); + psFree (bVec); + psFree (xFit); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + /* sample matrix equation: + + 1.0 0.1 0.1 | 1.0 | |1.15| + 0.1 1.0 0.2 | 1.0 | = |1.20| + 0.1 0.2 0.5 | 0.5 | |0.55| + + lower product : 1.0*0.1 + 1.0*0.2 = 0.3 + upper product : 0.1*0.5 = 0.05 + : 0.2*0.5 = 0.10 + */ + + // test psSparseBorderMultiply + { + psMemId id = psMemGetId(); + + diag ("solve a simple, small matrix equation "); + + // the basic equation (Ax = b) is: + // |S B'||x| = |f| + // |B Q ||y| = |g| + + // construct a matrix S with diagonals of 1 and a small number of off diagonal elements. + // construct a border with finite values and a corresponding Q matrix + // construct a vector x, construct the corresponding vector b by multiplication. solve + // Ax = b for x using psSparseSolve. compare with the input values for x. + + int Nrows = 2; + int Nborder = 1; + + // construct the sparse matrix + psSparse *matrix = psSparseAlloc (Nrows, Nrows); + ok(matrix != NULL, "psSparse successfully allocated"); + skip_start(matrix == NULL, 5, "Skipping tests because psSparseAlloc() failed"); + + psSparseMatrixElement (matrix, 0, 0, 1.0); + psSparseMatrixElement (matrix, 1, 1, 1.0); + psSparseMatrixElement (matrix, 1, 0, 0.1); + psSparseResort (matrix); + + // border region has a width of 1: + psSparseBorder *border = psSparseBorderAlloc (matrix, Nborder); + + // construct the B component: + psSparseBorderElementB (border, 0, 0, 0.1); + psSparseBorderElementB (border, 1, 0, 0.2); + + // construct the T component: + psSparseBorderElementT (border, 0, 0, 0.5); + + // construct the X and Y vectors: + psVector *xRef = psVectorAlloc (Nrows, PS_TYPE_F32); + xRef->data.F32[0] = 1.0; + xRef->data.F32[1] = 1.0; + psVector *yRef = psVectorAlloc (Nborder, PS_TYPE_F32); + yRef->data.F32[0] = 0.5; + + // construct the f and g vectors by multiplication: + psVector *fVec; + + // test the support functions: LowerProduct + fVec = psSparseBorderLowerProduct (NULL, border, xRef); + ok_float (fVec->n, 1.0, "f dimen: %d", fVec->n); + ok_float (fVec->data.F32[0], 0.3, "f(0): %f", fVec->data.F32[0]); + psFree (fVec); + + // test the support functions: Upper Product + fVec = psSparseBorderUpperProduct (NULL, border, yRef); + ok_float (fVec->n, 2.0, "f dimen: %d", fVec->n); + ok_float (fVec->data.F32[0], 0.05, "f(0): %f", fVec->data.F32[0]); + ok_float (fVec->data.F32[1], 0.10, "f(0): %f", fVec->data.F32[1]); + psFree (fVec); + + // test the support functions: Square Product + fVec = psSparseBorderSquareProduct (NULL, border, yRef); + ok_float (fVec->n, 1.0, "f dimen: %d", fVec->n); + ok_float (fVec->data.F32[0], 0.25, "f(0): %f", fVec->data.F32[0]); + psFree (fVec); + + fVec = NULL; + psVector *gVec = NULL; + psSparseBorderMultiply (&fVec, &gVec, border, xRef, yRef); + ok_float (fVec->data.F32[0], 1.15, "f(0): %f", fVec->data.F32[0]); + ok_float (fVec->data.F32[1], 1.20, "f(1): %f", fVec->data.F32[1]); + ok_float (gVec->data.F32[0], 0.55, "g(0): %f", gVec->data.F32[0]); + + // supply the fVec and gVec data to the border + for (int i = 0; i < Nrows; i++) + { + psSparseVectorElement (border->sparse, i, fVec->data.F32[i]); + } + for (int i = 0; i < Nborder; i++) + { + psSparseBorderElementG (border, i, gVec->data.F32[i]); + } + + // solve the border equation + psSparseConstraint constraint; + constraint.paramMin = 0.0; + constraint.paramMax = 1e8; + constraint.paramDelta = 1e8; + + // solve for normalization terms (need include local sky?) + psVector *xFit = NULL; + psVector *yFit = NULL; + psSparseBorderSolve (&xFit, &yFit, constraint, border, 4); + ok_float_tol (xFit->data.F32[0], 1.0, 1e-4, "f(0): %f", xFit->data.F32[0]); + ok_float_tol (xFit->data.F32[1], 1.0, 1e-4, "f(1): %f", xFit->data.F32[1]); + ok_float_tol (yFit->data.F32[0], 0.5, 1e-4, "g(0): %f", yFit->data.F32[0]); + + psFree (xFit); + psFree (yFit); + psFree (fVec); + psFree (gVec); + psFree (xRef); + psFree (yRef); + psFree (border); + psFree (matrix); + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test psSparseBorderSolve for a simple example matrix + { + psMemId id = psMemGetId(); + + diag ("solve a simple, small matrix equation "); + + // the basic equation (Ax = b) is: + // |S B'||x| = |f| + // |B Q ||y| = |g| + + // construct a matrix S with diagonals of 1 and a small number of off diagonal elements. + // construct a border with finite values and a corresponding Q matrix + // construct a vector x, construct the corresponding vector b by multiplication. solve + // Ax = b for x using psSparseSolve. compare with the input values for x. + + int Nrows = 10; + int Nborder = 1; + + // construct the sparse matrix + psSparse *matrix = psSparseAlloc (Nrows, Nrows); + ok(matrix != NULL, "psSparse successfully allocated"); + skip_start(matrix == NULL, 5, "Skipping tests because psSparseAlloc() failed"); + + for (int i = 0; i < Nrows; i++) + { + psSparseMatrixElement (matrix, i, i, 1.0); + if (i + 1 < Nrows) { + psSparseMatrixElement (matrix, i + 1, i, 0.1); + } + } + psSparseResort (matrix); + + // border region has a width of 1: + psSparseBorder *border = psSparseBorderAlloc (matrix, Nborder); + + // construct the B component: + for (int i = 0; i < Nrows; i++) + { + for (int j = 0; j < Nborder; j++) { + psSparseBorderElementB (border, i, j, 0.1); + } + } + ok_float(border->Bij->data.F32[0][0], 0.1, "set matrix element %d,%d", 0, 0); + + // construct the Q component: + for (int i = 0; i < Nborder; i++) + { + for (int j = 0; j < Nborder; j++) { + psSparseBorderElementT (border, i, j, i+j+2); + } + } + + // construct the X and Y vectors: + psVector *xRef = psVectorAlloc (Nrows, PS_TYPE_F32); + for (int i = 0; i < Nrows; i++) + { + xRef->data.F32[i] = 1.0; + } + psVector *yRef = psVectorAlloc (Nborder, PS_TYPE_F32); + for (int i = 0; i < Nborder; i++) + { + yRef->data.F32[i] = 1.0; + } + + // construct the f and g vectors by multiplication: + psVector *fVec = NULL; + psVector *gVec = NULL; + psSparseBorderMultiply (&fVec, &gVec, border, xRef, yRef); + + // supply the fVec and gVec data to the border + for (int i = 0; i < Nrows; i++) + { + psSparseVectorElement (border->sparse, i, fVec->data.F32[i]); + } + for (int i = 0; i < Nborder; i++) + { + psSparseBorderElementG (border, i, gVec->data.F32[i]); + } + + // solve the border equation + psSparseConstraint constraint; + constraint.paramMin = 0.0; + constraint.paramMax = 1e8; + constraint.paramDelta = 1e8; + + // solve for normalization terms (need include local sky?) + psVector *xFit = NULL; + psVector *yFit = NULL; + psSparseBorderSolve (&xFit, &yFit, constraint, border, 4); + + // measure stdev between xFit and xRef + float dS = 0; + float dS2 = 0; + for (int i = 0; i < Nrows; i++) + { + float dX = xRef->data.F32[i] - xFit->data.F32[i]; + // fprintf (stderr, "%5.3f %5.3f %5.3f %5.3f\n", fVec->data.F32[i], xRef->data.F32[i], xFit->data.F32[i], dX); + dS2 += PS_SQR(dX); + dS += dX; + } + dS /= Nrows; + dS2 = sqrt (dS2/Nrows - dS*dS); + ok_float_tol (dS2, 0.0, 1e-4, "scatter: %.20f", dS2); + + // measure stdev between yFit and yRef + float dY = yRef->data.F32[0] - yFit->data.F32[0]; + // fprintf (stderr, "%5.3f %5.3f %5.3f %5.3f\n", gVec->data.F32[0], yRef->data.F32[0], yFit->data.F32[0], dS); + ok_float_tol (dY, 0.0, 2e-4, "scatter: %.20f", dY); + + psFree (xRef); + psFree (yRef); + psFree (xFit); + psFree (yFit); + psFree (fVec); + psFree (gVec); + psFree (matrix); + psFree (border); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/math/tap_psSpline1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psSpline1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psSpline1D.c (revision 12167) @@ -0,0 +1,301 @@ +/* @file tst_psImageManip.c +* +* @brief This file will contain tests for all of the public psLib functions +* that implement 1-D spline functionality: +* psSpline1DAlloc() +* psSpline1DEval() +* psSpline1DEvalVector() +* psVectorFitSpline1D() +* +* This file is composed of the tests formerly in tst_psFunc02.c, +* tst_psFunc03.c, tst_psFunc04.c, tst_psFunc05.c, and tst_psFunc07.c. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-06 00:48:54 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define ERROR_TOLERANCE_PERCENT 1.00 +#define VERBOSE 0 +/********************************************************************************* +CheckErrorF32(psF32 actual, psF32 expect): this routine returns FALSE if the +actual and expect arguments are with ERROR_TOLERANCE_PERCENT of each other, +otherwise it returns TRUE. + ********************************************************************************/ +psBool CheckErrorF32( + psF32 actual, + psF32 expect) +{ + if ((fabs(actual - expect) / fabs(expect)) > ERROR_TOLERANCE_PERCENT) { + return(true); + } else { + return(false); + } +} +/********************************************************************************* +CheckErrorF64(psF64 actual, psF64 expect): this routine returns FALSE if the +actual and expect arguments are with ERROR_TOLERANCE_PERCENT of each other, +otherwise it returns TRUE. + ********************************************************************************/ +psBool CheckErrorF64( + psF64 actual, + psF64 expect) +{ + if ((fabs(actual - expect) / fabs(expect)) > ERROR_TOLERANCE_PERCENT) { + return(true); + } else { + return(false); + } +} + +psF32 myFunc00(psF32 x) +{ + return(x); +} + +psF64 myFunc00_F64(psF64 x) +{ + return(x); +} + +#define A 4.0 +#define B -3.0 +#define C 0.2 +#define D 0.1 +psF32 myFunc01(psF32 x) +{ + return(A + x * (B + x * (C + x * (D)))); +} +psF64 myFunc01_F64(psF64 x) +{ + return(A + x * (B + x * (C + x * (D)))); +} + +typedef psF32 (*mappingFuncF32)(psF32 x); +typedef psF64 (*mappingFuncF64)(psF64 x); + +bool genericF32Test(psS32 NumSplines, mappingFuncF32 func, bool xNull) +{ + // We test the psVectorFitSpline1D, psSpline1DEval() functions. F32 version. + bool testStatus = true; + { + psMemId id = psMemGetId(); + psVector *xF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + psVector *yF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = (psF32) i; + yF32->data.F32[i] = (psF32) func((psF32) i); + } + + psSpline1D *tmpSpline = NULL; + if (!xNull) { + tmpSpline = psVectorFitSpline1D(xF32, yF32); + } else { + tmpSpline = psVectorFitSpline1D(NULL, yF32); + } + if(tmpSpline == NULL) { + diag("psVectorFitSpline1D() returned NULL"); + testStatus = false; + } else { + if (tmpSpline->n != NumSplines) { + diag("psVectorFitSpline1D() did not properly set the psSpline1D->n member"); + testStatus = false; + } + if(tmpSpline->spline == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->spline member."); + testStatus = false; + } + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->spline[%d] member.", i); + testStatus = false; + } + } + if (tmpSpline->knots == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->knots member"); + testStatus = false; + } + if (tmpSpline->p_psDeriv2 == NULL) { + diag("psVectorFitSpline1D()returned a NULL psSpline1D->p_psDeriv2 member"); + testStatus = false; + } + + // Test psSpline1DEval() + for (psS32 i=0;idata.F32[i], func(xF32->data.F32[i]))) { + testStatus = false; + diag("TEST ERROR: f(%f) is %f, should be %f", xF32->data.F32[i], + yF32Test->data.F32[i], myFunc00(xF32->data.F32[i])); + } + } + psFree(yF32Test); + } + } + + psFree(tmpSpline); + psFree(xF32); + psFree(yF32); + if (psMemCheckLeaks (id, NULL, NULL, false)) { + diag("TEST ERROR: memory leaks"); + testStatus = false; + } + } + return(testStatus); +} + + +// This is a duplicate cut-n-paste of the F32 function +bool genericF64Test(psS32 NumSplines, mappingFuncF64 func, bool xNull) +{ + // We test the psVectorFitSpline1D, psSpline1DEval() functions. F64 version. + bool testStatus = true; + { + psMemId id = psMemGetId(); + psVector *xF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + psVector *yF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = (psF64) i; + yF64->data.F64[i] = (psF64) func((psF64) i); + } + + psSpline1D *tmpSpline = NULL; + if (!xNull) { + tmpSpline = psVectorFitSpline1D(xF64, yF64); + } else { + tmpSpline = psVectorFitSpline1D(NULL, yF64); + } + if(tmpSpline == NULL) { + diag("psVectorFitSpline1D() returned NULL"); + testStatus = false; + } else { + if (tmpSpline->n != NumSplines) { + diag("psVectorFitSpline1D() did not properly set the psSpline1D->n member"); + testStatus = false; + } + if(tmpSpline->spline == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->spline member."); + testStatus = false; + } + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->spline[%d] member.", i); + testStatus = false; + } + } + if (tmpSpline->knots == NULL) { + diag("psVectorFitSpline1D() returned a NULL psSpline1D->knots member"); + testStatus = false; + } + if (tmpSpline->p_psDeriv2 == NULL) { + diag("psVectorFitSpline1D()returned a NULL psSpline1D->p_psDeriv2 member"); + testStatus = false; + } + + // Test psSpline1DEval() + for (psS32 i=0;idata.F32[i], func(xF64->data.F64[i]))) { + testStatus = false; + diag("TEST ERROR psSpline1DEvalVector(): f(%f) is %f, should be %f", xF64->data.F64[i], + yF64Test->data.F32[i], myFunc00(xF64->data.F64[i])); + } + } + psFree(yF64Test); + } + } + + psFree(tmpSpline); + psFree(xF64); + psFree(yF64); + if (psMemCheckLeaks (id, NULL, NULL, false)) { + diag("TEST ERROR: memory leaks"); + testStatus = false; + } + } + return(testStatus); +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel( PS_LOG_INFO ); + + plan_tests(24); + // psSplineAllocTest() + { + psMemId id = psMemGetId(); + psSpline1D *tmpSpline = psSpline1DAlloc(); + ok(tmpSpline != NULL, "psSpline1DAlloc() returned non-NULL"); + skip_start(tmpSpline == NULL, 4, "Skipping tests because psSpline1DAlloc() failed"); + ok(tmpSpline->n == 0, "psSpline1DAlloc() properly set the psSpline1D->n member"); + ok(tmpSpline->spline == NULL, "psSpline1DAlloc() properly set the psSpline1D->spline member"); + ok(tmpSpline->knots == NULL, "psSpline1DAlloc() properly set the psSpline1D->knots member"); + ok(tmpSpline->p_psDeriv2 == NULL, "psSpline1DAlloc() properly set the psSpline1D->p_psDeriv2 member"); + psFree(tmpSpline); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // psSplineEvalTest_sub(): Call psVectorFitSpline1D with NULL arguments. + { + psMemId id = psMemGetId(); + psSpline1D *tmpSpline = psVectorFitSpline1D(NULL, NULL); + ok(tmpSpline == NULL, "psVectorFitSpline1D() returns NULL with NULL arguments"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + ok(genericF32Test(1, myFunc00, false), "Generic, simple mapping, F32 test. 1 spline"); + ok(genericF32Test(95, myFunc00, false), "Generic, simple mapping, F32 test. 95 splines"); + ok(genericF32Test(1, myFunc01, false), "Generic, simple mapping, F32 test. 1 spline"); + ok(genericF32Test(95, myFunc01, false), "Generic, simple mapping, F32 test. 95 splines"); + ok(genericF32Test(1, myFunc00, true), "Generic, simple mapping, F32 test. 1 spline"); + ok(genericF32Test(95, myFunc00, true), "Generic, simple mapping, F32 test. 95 splines"); + ok(genericF32Test(1, myFunc01, true), "Generic, simple mapping, F32 test. 1 spline"); + ok(genericF32Test(95, myFunc01, true), "Generic, simple mapping, F32 test. 95 splines"); + ok(genericF64Test(1, myFunc00_F64, false), "Generic, simple mapping, F64 test. 1 spline"); + ok(genericF64Test(95, myFunc00_F64, false), "Generic, simple mapping, F64 test. 95 splines"); + ok(genericF64Test(1, myFunc01_F64, false), "Generic, simple mapping, F64 test. 1 spline"); + ok(genericF64Test(95, myFunc01_F64, false), "Generic, simple mapping, F64 test. 95 splines"); + ok(genericF64Test(1, myFunc00_F64, true), "Generic, simple mapping, F64 test. 1 spline"); + ok(genericF64Test(95, myFunc00_F64, true), "Generic, simple mapping, F64 test. 95 splines"); + ok(genericF64Test(1, myFunc01_F64, true), "Generic, simple mapping, F64 test. 1 spline"); + ok(genericF64Test(95, myFunc01_F64, true), "Generic, simple mapping, F64 test. 95 splines"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats00.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats00.c (revision 12167) @@ -0,0 +1,295 @@ +/** @file tst_psStats00.c + * + * @brief Contains tests for psVectorStats with sample mean calculations + * + + * We extensively test the code with data type PS_TYPE_F32. If these pass, we do a much + * simpler test with data type PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 00:50:03 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii + */ + +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define N 15 + +static psF32 samplesF32[N] = + { + 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 + }; +static psS8 samplesS8[N] = + { + 1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15 + }; +static psU16 samplesU16[N] = + { + 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 + }; +static psF64 samplesF64[N] = + { + 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 + }; +static psF32 errorsF32[N] = + { + -0.10, 0.11, -0.12, 0.13, -0.14, 0.15, -0.16, 0.17, + -0.18, 0.19, -0.20, 0.21, -0.22, 0.23, -0.24 + }; + +static psF64 expectedMeanNoMaskF32 = 2.060667; +static psF64 expectedMeanWithMaskF32 = 2.123846; +static psF64 expectedMeanNoMaskS8 = 2.000000; +static psF64 expectedMeanNoMaskU16 = 8.000000; +static psF64 expectedMeanNoMaskF64 = 2.060667; +static psF64 expectedMeanRangeNoMaskF32 = 0.137500; +static psF64 expectedMeanRangeWithMaskF32 = -0.366667; +static psF64 expectedWeightMeanNoMaskF32 = 1.807210; +static psF64 expectedWeightMeanWithMaskF32 = 1.890217; +static psF64 expectedWeightMeanNoMaskRangeF32 = 0.640952; +static psF64 expectedWeightMeanWithMaskRangeF32 = 0.046574; + +#include +psS32 main(psS32 argc, char* argv[] ) +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(60); + + // Allocate data vectors for F32 tests + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector *myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector *myErrors = psVectorAlloc(N, PS_TYPE_F32); + myErrors->n = N; + psVector *maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + // Set the appropriate values for the vector data. + for (long i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + myErrors->data.F32[i] = errorsF32[i]; + if (i > 1) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + // Call psVectorStats() with no vector mask. + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanNoMaskF32, 1e-4, + "The mean was %f, should be %f", myStats->sampleMean, expectedMeanNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke psVectorStats with no vector mask and error vector + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, myErrors, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedWeightMeanNoMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedWeightMeanNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke psVectorStats with no vector mask and data range + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE; + myStats->min = -10.0; + myStats->max = 8.0; + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanRangeNoMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanRangeNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Invoke psVectorStats with no vector mask, errors and data range + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE; + bool result = psVectorStats(myStats, myVector, myErrors, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedWeightMeanNoMaskRangeF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedWeightMeanNoMaskRangeF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask=1 + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_SAMPLE_MEAN; + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanWithMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke psVectorStats with vector mask and error vector + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, myErrors, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedWeightMeanWithMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedWeightMeanWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke psVectorStats with vector mask and data range + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE; + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanRangeWithMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanRangeWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke psVectorStats with vector mask, errors, and data range + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, myErrors, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedWeightMeanWithMaskRangeF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedWeightMeanWithMaskRangeF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask=2. + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_SAMPLE_MEAN; + for (psS32 i = 0; i < N; i++) { + if (maskVector->data.U8[i] == 1) { + maskVector->data.U8[i] = 2; + } + } + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 2); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanWithMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask=3. + { + psMemId id = psMemGetId(); + for (psS32 i = 0; i < N; i++) + { + if (maskVector->data.U8[i] == 2) { + maskVector->data.U8[i] = 3; + } + } + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 4); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanNoMaskF32, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Mask all values and verify return is NAN + { + psMemId id = psMemGetId(); + for(psS32 i = 0; i < N; i++) + { + maskVector->data.U8[i] = 1; + } + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(isnan(myStats->sampleMean), "psVectorStats() returned NAN"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with NULL inputs. + { + psMemId id = psMemGetId(); + ok(!psVectorStats(myStats, NULL, NULL, NULL, 0), "psVectorStats() returned false with NULL inputs"); + ok(!psVectorStats(NULL, myVector, NULL, NULL, 0), "psVectorStats() returned false with NULL inputs"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(myStats); + psFree(myVector); + psFree(myErrors); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); + + + // Test SampleMean: S8 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_S8); + for (psS32 i = 0; i < N; i++) + { + myVector->data.S8[i] = samplesS8[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanNoMaskS8, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanNoMaskS8); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Test SampleMean: U16 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.U16[i] = samplesU16[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanNoMaskU16, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanNoMaskU16); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test SampleMean: F64 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.F64[i] = samplesF64[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->sampleMean), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMean, expectedMeanNoMaskF64, 1e-4, "The mean was %f, should be %f", myStats->sampleMean, expectedMeanNoMaskF64); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats01.c (revision 12167) @@ -0,0 +1,187 @@ +/** @file tst_psStats01.c +* +* @brief Contains tests for psVectorStats with max calculations. +* +* We extensively test the code with data type PS_TYPE_F32. If these pass, we +* do a much simpler test with data types PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:41:51 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define N 15 + +static psF32 samplesF32[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psS8 samplesS8[N] = {1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15}; +static psU16 samplesU16[N] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15}; +static psF64 samplesF64[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; + +static psF64 expectedMaxNoMaskF32 = 14.04; +static psF64 expectedMaxNoMaskS8 = 14.00; +static psF64 expectedMaxNoMaskU16 = 15.00; +static psF64 expectedMaxNoMaskF64 = 14.04; + +static psF64 expectedMaxWithMaskF32 = 13.03; +static psF64 expectedMaxRangeNoMaskF32 = 10.00; +static psF64 expectedMaxRangeWithMaskF32 = 13.03; + +psS32 main(psS32 argc, char* argv[] ) +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(32); + + psStats* myStats = psStatsAlloc(PS_STAT_MAX); + psVector* myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector* maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + for (psS32 i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + if (i < 13) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + // Call psVectorStats() with no vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxNoMaskF32, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxWithMaskF32, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range with no mask + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_MAX | PS_STAT_USE_RANGE; + myStats->max = 10.2; + myStats->min = 0.0; + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxRangeNoMaskF32, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxRangeNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range and mask + { + psMemId id = psMemGetId(); + myStats->max = 14.0; + myStats->min = 0.0; + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxRangeWithMaskF32, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxRangeWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range with no valid data + { + psMemId id = psMemGetId(); + myStats->max = 100.00; + myStats->min = 90.00; + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(!result, "psVectorStats failed as expected"); + ok(isnan(myStats->max), "psVectorStats() returned NAN"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); + + // Test StatsMax: S8 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MAX); + psVector* myVector = psVectorAlloc(N, PS_TYPE_S8); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.S8[i] = samplesS8[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxNoMaskS8, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxNoMaskS8); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test StatsMax: U16 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MAX); + psVector* myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.U16[i] = samplesU16[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxNoMaskU16, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxNoMaskU16); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test StatsMax: F64 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MAX); + psVector* myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.F64[i] = samplesF64[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->max), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->max, expectedMaxNoMaskF64, 1e-4, + "The max was %f, should be %f", myStats->max, expectedMaxNoMaskF64); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} + Index: /branches/rel-1-1/psLib/test/math/tap_psStats02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats02.c (revision 12167) @@ -0,0 +1,193 @@ +/** @file tst_psStats02.c +* +* @brief Contains tests for psVectorStats with min calculations +* +* We extensively test the code with data type PS_TYPE_F32. If these pass, we +* do a much simpler test with data types PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. +* +* If the psStats,c code every changes such that vectors of different type +* are handled by different routines, then these tests must be extended. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 04:41:51 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define N 15 + +static psF32 samplesF32[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psS8 samplesS8[N] = {1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15}; +static psU16 samplesU16[N] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15}; +static psF64 samplesF64[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; + +static psF64 expectedMinNoMaskF32 = -15.05; +static psF64 expectedMinNoMaskS8 = -15.00; +static psF64 expectedMinNoMaskU16 = 1.00; +static psF64 expectedMinNoMaskF64 = -15.05; + +static psF64 expectedMinWithMaskF32 = -12.02; +static psF64 expectedMinRangeNoMaskF32 = 1.10; +static psF64 expectedMinRangeWithMaskF32 = -12.02; + +psS32 main(psS32 argc, char* argv[] ) +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(32); + + psStats* myStats = psStatsAlloc(PS_STAT_MIN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector* maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + for (psS32 i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + if (i < 13) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinNoMaskF32, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinWithMaskF32, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range with no mask + { + psMemId id = psMemGetId(); + myStats->options = PS_STAT_MIN | PS_STAT_USE_RANGE; + myStats->max = 10.2; + myStats->min = 0.0; + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats suceeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinRangeNoMaskF32, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinRangeNoMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range and mask + { + psMemId id = psMemGetId(); + myStats->max = 10.1; + myStats->min = -15.00; + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinRangeWithMaskF32, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinRangeWithMaskF32); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Invoke function with data range with no valid data + { + psMemId id = psMemGetId(); + myStats->max = 100.00; + myStats->min = 90.00; + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(!result, "psVectorStats failed as expected"); + ok(isnan(myStats->min), "psVectorStats() returned NAN"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + psFree(myStats); + psFree(myVector); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); + + + // Test StatsMin: S8 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MIN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_S8); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.S8[i] = samplesS8[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinNoMaskS8, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinNoMaskS8); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test StatsMin: U16 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MAX); + psVector* myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.U16[i] = samplesU16[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinNoMaskU16, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinNoMaskU16); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Test StatsMin: F64 + { + psMemId id = psMemGetId(); + psStats* myStats = psStatsAlloc(PS_STAT_MIN); + psVector* myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + for (psS32 i = 0; i < N; i++) + { + myVector->data.F64[i] = samplesF64[i]; + } + + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->min), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->min, expectedMinNoMaskF64, 1e-4, + "The min was %f, should be %f", myStats->min, expectedMinNoMaskF64); + psFree(myStats); + psFree(myVector); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} + Index: /branches/rel-1-1/psLib/test/math/tap_psStats03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats03.c (revision 12167) @@ -0,0 +1,66 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_MEDIAN is correctly computed + by the procedure psVectorStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define N1 1029 // This should be an odd number. +#define N ((4 * N1) + 1) +float realMedianWithMask = (float) (N-3)/4; +float realMedianNoMask = (float) (N-1)/2; + +psS32 main() +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(9); + + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); + psVector *myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector *maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + // Set the appropriate values for the vector data. + for (int i=0;idata.F32[i] = (float) i; + if (i < (N/2)) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + // Call psVectorStats() with no vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleMedian), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMedian, realMedianNoMask, 1e-4, + "The sample median was %f, should be %f", myStats->sampleMedian, realMedianNoMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleMedian), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleMedian, realMedianWithMask, 1e-4, + "The sample median was %f, should be %f", myStats->sampleMedian, realMedianWithMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats05.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats05.c (revision 12167) @@ -0,0 +1,49 @@ +/***************************************************************************** + This routine must ensure that the psStats structure is correctly + allocated and deallocated by the procedure psStatsAlloc(). + + XXX: This should be test 00. It should be merged into other tests + since it's so trivial. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define MISC_FLOAT_NUMBER 342.0 + +psS32 main() +{ + psLogSetFormat("HLNM"); + plan_tests(1); + + { + psMemId id = psMemGetId(); + psStats *myStats =psStatsAlloc(PS_STAT_SAMPLE_MEAN); + myStats->sampleMean = MISC_FLOAT_NUMBER; + myStats->sampleMedian = MISC_FLOAT_NUMBER; + myStats->sampleStdev = MISC_FLOAT_NUMBER; + myStats->sampleUQ = MISC_FLOAT_NUMBER; + myStats->sampleLQ = MISC_FLOAT_NUMBER; + myStats->robustMedian = MISC_FLOAT_NUMBER; + myStats->robustStdev = MISC_FLOAT_NUMBER; + myStats->robustUQ = MISC_FLOAT_NUMBER; + myStats->robustLQ = MISC_FLOAT_NUMBER; + myStats->robustN50 = MISC_FLOAT_NUMBER; + myStats->fittedMean = MISC_FLOAT_NUMBER; + myStats->fittedStdev = MISC_FLOAT_NUMBER; + myStats->fittedNfit = MISC_FLOAT_NUMBER; + myStats->clippedMean = MISC_FLOAT_NUMBER; + myStats->clippedStdev = MISC_FLOAT_NUMBER; + myStats->clippedNvalues = MISC_FLOAT_NUMBER; + myStats->clipSigma = MISC_FLOAT_NUMBER; + myStats->clipIter = MISC_FLOAT_NUMBER; + myStats->min = MISC_FLOAT_NUMBER; + myStats->max = MISC_FLOAT_NUMBER; + myStats->binsize = MISC_FLOAT_NUMBER; + myStats->nSubsample = MISC_FLOAT_NUMBER; + myStats->options = 0x0; + psFree(myStats); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats06.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats06.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats06.c (revision 12167) @@ -0,0 +1,67 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_STDEV is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +//#include "float.h" +//#include +#define N 15 +float realStdevNoMask = 4.472136; +float realStdevWithMask = 2.160247; + +psS32 main() +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(9); + + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_STDEV); + psVector *myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector *maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + psS32 count = 0; + for (int i=0;idata.F32[i] = (float) i; + if (i < (N/2)) { + maskVector->data.U8[i] = 0; + count++; + } else { + maskVector->data.U8[i] = 1; + } + } + + // Call psVectorStats() with no vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleStdev), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleStdev, realStdevNoMask, 1e-4, + "The mean was %f, should be %f", myStats->sampleStdev, realStdevNoMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleStdev), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleStdev, realStdevWithMask, 1e-4, + "The mean was %f, should be %f", myStats->sampleStdev, realStdevWithMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats07.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats07.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats07.c (revision 12167) @@ -0,0 +1,508 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_ROBUST_QUARTILE is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. +*****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 1000 +#define MEAN 32.0 +#define STDEV 2.0 +#define PERCENT_OUTLIERS 1 +#define OUTLIER_MAGNITUDE (NUM_DATA * 10) +#define ERROR_TOLERANCE .10 +#define ERRORS 1000.0 +#define SEED 1995 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 + +#define TST_IN_NULL 0x00000001 +#define TST_IN_F32 0x00000002 +#define TST_IN_F64 0x00000004 +#define TST_IN_S8 0x00000008 +#define TST_IN_U16 0x00000010 +#define TST_IN_S32 0x00000020 +#define TST_ERRORS_NULL 0x00000040 +#define TST_ERRORS_F32 0x00000080 +#define TST_ERRORS_F64 0x00000100 +#define TST_ERRORS_S8 0x00000200 +#define TST_ERRORS_U16 0x00000400 +#define TST_ERRORS_S32 0x00000800 +#define TST_MASK_NULL 0x00001000 +#define TST_MASK_U8 0x00002000 +#define TST_MASK_S32 0x00004000 + +/***************************************************************************** + p_psGaussianDev() + This private routine (formerly a psLib API routine) creates a psVector of the + specified size and type F32 and fills it with a random Gaussian distribution + of numbers with the specified mean and sigma. + +XXX: It's possible to have a different seed everytime. However, for now, +for testability, we use a common seed. + *****************************************************************************/ +#define PS_XXX_GAUSSIAN_SEED 1995 +psVector* p_psGaussianDev(psF32 mean, + psF32 sigma, + unsigned int Npts) +{ + PS_ASSERT_INT_NONNEGATIVE(Npts, NULL); + + // psRandom *r = psRandomAlloc(PS_RANDOM_TAUS, p_psRandomGetSystemSeed()); + psRandom *r = psRandomAlloc(PS_RANDOM_TAUS, PS_XXX_GAUSSIAN_SEED); + psVector* gauss = psVectorAlloc(Npts, PS_TYPE_F32); + for (unsigned int i = 0; i < Npts; i++) { + gauss->data.F32[i] = mean + p_psRandomGaussian(r, sigma); + gauss->n++; + } + psFree(r); + + return(gauss); +} + +psBool genericRobustStatsTest( + unsigned int flags, + psS32 numData, + psU32 maskValue, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + psS32 memLeaks = 0; + psVector *in = NULL; + psVector *errors = NULL; + psVector *mask = NULL; + srand(SEED); + + if (expectedRC == true) { + if (VERBOSE) + printf("This test should not generate any errors.\n"); + } + if (expectedRC == false) { + if (VERBOSE) + printf("This test should generate an error message, and return NULL.\n"); + } + psVector *gaussVector = p_psGaussianDev(MEAN, STDEV, numData); + + + if (flags & TST_IN_NULL) { + if (VERBOSE) + printf(" using a NULL in vector\n"); + } + + if (flags & TST_IN_F32) { + if (VERBOSE) + printf(" using a psF32 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = gaussVector->data.F32[i]; + in->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TST_IN_F64) { + if (VERBOSE) + printf(" using a psF64 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = (psF64) gaussVector->data.F32[i]; + in->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TST_IN_S8) { + if (VERBOSE) + printf(" using a psS8 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) gaussVector->data.F32[i]; + in->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + + if (flags & TST_IN_U16) { + if (VERBOSE) + printf(" using a psU16 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) gaussVector->data.F32[i]; + in->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + + if (flags & TST_IN_S32) { + if (VERBOSE) + printf(" using a psS32 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) gaussVector->data.F32[i]; + in->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + psFree(gaussVector); + + // in->n = in->nalloc; + if (flags & TST_ERRORS_NULL) { + if (VERBOSE) + printf(" using a NULL errors vector\n"); + } + + if (flags & TST_ERRORS_F32) { + if (VERBOSE) + printf(" using a psF32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = ERRORS; + errors->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TST_ERRORS_F64) { + if (VERBOSE) + printf(" using a psF64 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = ERRORS; + errors->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TST_ERRORS_S8) { + if (VERBOSE) + printf(" using a psS8 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) ERRORS; + errors->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + + if (flags & TST_ERRORS_U16) { + if (VERBOSE) + printf(" using a psU16 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) ERRORS; + errors->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + + if (flags & TST_ERRORS_S32) { + if (VERBOSE) + printf(" using a psS32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) ERRORS; + errors->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + + if (flags & TST_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TST_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + for (psS32 i=0;idata.U8[i] = (psU8) 0; + mask->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.U8[i]); + } + } + } + + if (flags & TST_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) 0; + mask->n++; + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + + // + // We calculate the sample mean and stdev without and outliers in the data. + // We will use this later in determining if the clipped stats are correct. + // + psF32 sampleMean=0.0; + psF32 sampleStdev=0.0; + psF32 sampleMedian=0.0; + psF32 sampleLQ=0.0; + psF32 sampleUQ=0.0; + if (expectedRC == true) { + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV | PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_QUARTILE); + bool rc = psVectorStats(myStats, in, NULL, NULL, maskValue); + if (rc == false) { + diag("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } else { + sampleMean = myStats->sampleMean; + sampleStdev = myStats->sampleStdev; + sampleMedian = myStats->sampleMedian; + sampleLQ = myStats->sampleLQ; + sampleUQ = myStats->sampleUQ; + } + psFree(myStats); + } + + // + // We add a few outliers to the input data. + // + if (flags & TST_IN_F32) { + for (psS32 i=0;i (random() % 100)) { + in->data.F32[i] = (psF32) OUTLIER_MAGNITUDE; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + if (flags & TST_IN_F64) { + for (psS32 i=0;i (random() % 100)) { + in->data.F64[i] = (psF64) OUTLIER_MAGNITUDE; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + if (flags & TST_IN_S8) { + for (psS32 i=0;i (random() % 100)) { + in->data.S8[i] = (psS8) OUTLIER_MAGNITUDE; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + if (flags & TST_IN_U16) { + for (psS32 i=0;i (random() % 100)) { + in->data.U16[i] = (psU16) OUTLIER_MAGNITUDE; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + if (flags & TST_IN_S32) { + for (psS32 i=0;i (random() % 100)) { + in->data.S32[i] = (psS32) OUTLIER_MAGNITUDE; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + // + // We call psVectorStats() and calculate the clipped stats. + // + psStats *myStats = psStatsAlloc( + PS_STAT_ROBUST_MEDIAN | + PS_STAT_ROBUST_STDEV | + PS_STAT_ROBUST_QUARTILE | + PS_STAT_FITTED_MEAN | + PS_STAT_FITTED_STDEV); + bool rc = psVectorStats(myStats, in, errors, mask, maskValue); + + if (rc == false) { + if (expectedRC == true) { + diag("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the psVectorStats() function returned non-NULL.\n"); + testStatus = false; + } + + // + // Fitted Mean + // + if (fabs(myStats->fittedMean - sampleMean) > (ERROR_TOLERANCE * sampleMean)) { + diag("TEST ERROR: the fitted mean was %.2f, should have been %.2f\n", myStats->fittedMean, sampleMean); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the fitted mean was %.2f, should have been %.2f\n", myStats->fittedMean, sampleMean); + } + + // + // Fitted Stdev + // + if (fabs(myStats->fittedStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + diag("TEST ERROR: the fitted stdev was %.2f, should have been %.2f\n", myStats->fittedStdev, sampleStdev); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the fitted stdev was %.2f, should have been %.2f\n", myStats->fittedStdev, sampleStdev); + } + + // + // Robust Stdev + // + if (fabs(myStats->robustStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + diag("TEST ERROR: the robust stdev was %.2f, should have been %.2f\n", myStats->robustStdev, sampleStdev); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the robust stdev was %.2f, should have been %.2f\n", myStats->robustStdev, sampleStdev); + } + + // + // Robust Median + // + if (fabs(myStats->robustMedian - sampleMedian) > (ERROR_TOLERANCE * sampleMedian)) { + diag("TEST ERROR: the robust median was %.2f, should have been %.2f\n", myStats->robustMedian, sampleMedian); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the robust median was %.2f, should have been %.2f\n", myStats->robustMedian, sampleMedian); + } + + // + // Robust LQ + // + if (fabs(myStats->robustLQ - sampleLQ) > (ERROR_TOLERANCE * sampleLQ)) { + diag("TEST ERROR: the robust LQ was %.2f, should have been %.2f\n", myStats->robustLQ, sampleLQ); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the robust LQ was %.2f, should have been %.2f\n", myStats->robustLQ, sampleLQ); + } + + // + // Robust UQ + // + if (fabs(myStats->robustUQ - sampleUQ) > (ERROR_TOLERANCE * sampleUQ)) { + diag("TEST ERROR: the robust UQ was %.2f, should have been %.2f\n", myStats->robustUQ, sampleUQ); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the robust UQ was %.2f, should have been %.2f\n", myStats->robustUQ, sampleUQ); + } + } + + psFree(myStats); + psFree(in); + psFree(errors); + psFree(mask); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return(testStatus); +} + + +psS32 main() +{ + psMemId id = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(3); + +// ok(genericRobustStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true), "RobustStatsTest() F32 data"); + ok(genericRobustStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_U8, NUM_DATA, 1, true), "RobustStatsTest() F32 data, non-NULL errors and mask vector"); +// ok(genericRobustStatsTest(TST_IN_F32 | TST_ERRORS_F32 | TST_MASK_U8, NUM_DATA, 1, true), "RobustStatsTest() F32 data, non-NULL errors and mask vector"); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} + Index: /branches/rel-1-1/psLib/test/math/tap_psStats08.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats08.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats08.c (revision 12167) @@ -0,0 +1,92 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_QUARTILE is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" +#define N1 25 +#define N (8 * N1) // Don't change this (N must be a multiple of 8) +float realLQNoMask = N/4.0; +float realUQNoMask = 3.0 * (N/4.0); +float realLQWithMask = N/8.0; +float realUQWithMask = 3.0 * (N/8.0); + +psS32 main() +{ + psMemId idGlobal = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(18); + + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_QUARTILE); + psVector *myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector *maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + for (int i=0;idata.F32[i] = (float) i; + if (i < (N/2)) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + + // Call psVectorStats() with no vector mask; test sampleLQ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleLQ), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleLQ, realLQNoMask, 1e-4, + "The sampleLQ was %f, should be %f", myStats->sampleLQ, realLQNoMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with no vector mask; test sampleUQ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, NULL, 0); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleUQ), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleUQ, realUQNoMask, 1e-4, + "The sampleUQ was %f, should be %f", myStats->sampleUQ, realUQNoMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask; test sampleLQ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleLQ), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleLQ, realLQWithMask, 1e-4, + "The sampleLQ was %f, should be %f", myStats->sampleLQ, + realLQWithMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // Call psVectorStats() with vector mask; test sampleUQ + { + psMemId id = psMemGetId(); + bool result = psVectorStats(myStats, myVector, NULL, maskVector, 1); + ok(result, "psVectorStats succeeded"); + ok(!isnan(myStats->sampleUQ), "psVectorStats() returned non-NAN"); + ok_float_tol(myStats->sampleUQ, realUQWithMask, 1e-4, + "The sampleUQ was %f, should be %f", myStats->sampleUQ, + realUQWithMask); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); + ok(!psMemCheckLeaks (idGlobal, NULL, NULL, false), "no memory leaks"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psStats09.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats09.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats09.c (revision 12167) @@ -0,0 +1,374 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_CLIPPED_MEAN and + PS_STAT_CLIPPED_STDEV is calculate correctly by the procedure + psVectorStats(). + + XXX: The capability is here to test a wide variety of input parameters. + We must do this, later. + *****************************************************************************/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +#define NUM_DATA 1000 +#define VERBOSE 0 +#define EXTRA_VERBOSE 0 +#define PERCENT_OUTLIERS 2 +#define ERROR_TOLERANCE .10 +#define ERRORS 1.0 +#define SEED 1995 + +#define TST_IN_NULL 0x00000001 +#define TST_IN_F32 0x00000002 +#define TST_IN_F64 0x00000004 +#define TST_IN_S8 0x00000008 +#define TST_IN_U16 0x00000010 +#define TST_IN_S32 0x00000020 +#define TST_ERRORS_NULL 0x00000040 +#define TST_ERRORS_F32 0x00000080 +#define TST_ERRORS_F64 0x00000100 +#define TST_ERRORS_S8 0x00000200 +#define TST_ERRORS_U16 0x00000400 +#define TST_ERRORS_S32 0x00000800 +#define TST_MASK_NULL 0x00001000 +#define TST_MASK_U8 0x00002000 +#define TST_MASK_S32 0x00004000 + + +psBool genericClippedStatsTest( + unsigned int flags, + psS32 numData, + psU32 maskValue, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + psS32 memLeaks = 0; + psVector *in = NULL; + psVector *errors = NULL; + psVector *mask = NULL; + srand(SEED); + + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Random number generator; using known seed + psVector *truth = psVectorAlloc(numData, PS_TYPE_F64); + truth->n = numData; + for (long i = 0; i < numData; i++) { + truth->data.F64[i] = psRandomGaussian(rng); + } + psFree(rng); + + if (expectedRC == true) { + if (VERBOSE) + printf("This test should not generate any errors.\n"); + } + if (expectedRC == false) { + if (VERBOSE) + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TST_IN_NULL) { + if (VERBOSE) + printf(" using a NULL in vector\n"); + } + + if (flags & TST_IN_F32) { + if (VERBOSE) + printf(" using a psF32 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_F32); + } + + if (flags & TST_IN_F64) { + if (VERBOSE) + printf(" using a psF64 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_F64); + } + + if (flags & TST_IN_S8) { + if (VERBOSE) + printf(" using a psS8 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_S8); + } + + if (flags & TST_IN_U16) { + if (VERBOSE) + printf(" using a psU16 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_U16); + } + + if (flags & TST_IN_S32) { + if (VERBOSE) + printf(" using a psS32 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_S32); + } + + if (flags & TST_ERRORS_NULL) { + if (VERBOSE) + printf(" using a NULL errors vector\n"); + } + + if (flags & TST_ERRORS_F32) { + if (VERBOSE) + printf(" using a psF32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_F64) { + if (VERBOSE) + printf(" using a psF64 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_S8) { + if (VERBOSE) + printf(" using a psS8 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_U16) { + if (VERBOSE) + printf(" using a psU16 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_S32) { + if (VERBOSE) + printf(" using a psS32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) ERRORS; + errors->n++; + } + } + + + if (flags & TST_MASK_NULL) { + if (VERBOSE) + printf(" using a NULL mask vector\n"); + } + + if (flags & TST_MASK_U8) { + if (VERBOSE) + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + for (psS32 i=0;idata.U8[i] = (psU8) 0; + mask->n++; + } + } + + if (flags & TST_MASK_S32) { + if (VERBOSE) + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) 0; + mask->n++; + } + } + + + // + // We add a few outliers to the input data. + // + psVector *outliers = psVectorAlloc(numData, PS_TYPE_U8); + outliers->n = numData; + psVectorInit(outliers, 0); + long numOutliers = 0; + if (flags & TST_IN_F32) { + for (psS32 i=0;i (random() % 100)) { + in->data.F32[i] = 100.0; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + if (flags & TST_IN_F64) { + for (psS32 i=0;i (random() % 100)) { + in->data.F64[i] = 100.0; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + if (flags & TST_IN_S8) { + for (psS32 i=0;i (random() % 100)) { + in->data.S8[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + if (flags & TST_IN_U16) { + for (psS32 i=0;i (random() % 100)) { + in->data.U16[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + if (flags & TST_IN_S32) { + for (psS32 i=0;i (random() % 100)) { + in->data.S32[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (EXTRA_VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + if (VERBOSE) + printf("%ld outliers.\n", numOutliers); + + // + // We calculate the sample mean and stdev without and outliers in the data. + // We will use this later in determining if the clipped stats are correct. + // + psF32 sampleMean=0.0; + psF32 sampleStdev=0.0; + if (expectedRC == true) { + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + bool rc = psVectorStats(myStats, in, errors, outliers, 1); + if (rc == false) { + diag("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } else { + sampleMean = myStats->sampleMean; + sampleStdev = myStats->sampleStdev; + } + psFree(myStats); + } + psFree(outliers); + + // + // We call psVectorStats() and calculate the clipped stats. + // + psStats *myStats = psStatsAlloc(PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + myStats->clipSigma = 5.0; + myStats->clipIter = 2; + bool rc = psVectorStats(myStats, in, errors, mask, maskValue); + if (rc == false) { + if (expectedRC == true) { + diag("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + diag("TEST ERROR: the psVectorStats() function returned non-NULL.\n"); + testStatus = false; + } + + if (VERBOSE) + printf("Used %ld data points after clipping %ld.\n", myStats->clippedNvalues, + in->n - myStats->clippedNvalues); + + if (fabs(myStats->clippedMean - sampleMean) > (ERROR_TOLERANCE * sampleMean)) { + diag("TEST ERROR: the clipped mean was %f, should have been %f\n", myStats->clippedMean, sampleMean); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the clipped mean was %f, should have been %f\n", myStats->clippedMean, sampleMean); + } + + if (fabs(myStats->clippedStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + diag("TEST ERROR: the clipped stdev was %f, should have been %f\n", myStats->clippedStdev, sampleStdev); + testStatus = false; + } else if (EXTRA_VERBOSE) { + printf("GOOD: the clipped stdev was %f, should have been %f\n", myStats->clippedStdev, sampleStdev); + } + + } + + psFree(myStats); + psFree(truth); + psFree(in); + psFree(errors); + psFree(mask); + psMemCheckCorruption(stderr, false); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return(testStatus); +} + +#define TRACE_LEVEL 0 +psS32 main() +{ + psMemId id = psMemGetId(); + psLogSetFormat("HLNM"); + plan_tests(6); + + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", TRACE_LEVEL); + psTraceSetLevel("p_psVectorSampleMean", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMax", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMin", TRACE_LEVEL); + psTraceSetLevel("p_psVectorCheckNonEmpty", TRACE_LEVEL); + psTraceSetLevel("p_psVectorNValues", TRACE_LEVEL); + psTraceSetLevel("p_psVectorClippedStats", TRACE_LEVEL); + psTraceSetLevel("p_psNormalizeVectorRange", TRACE_LEVEL); + psTraceSetLevel("psStatsAlloc", TRACE_LEVEL); + psTraceSetLevel("p_psConvertToF32", TRACE_LEVEL); + psTraceSetLevel("psVectorStats", TRACE_LEVEL); + + ok(genericClippedStatsTest(TST_IN_NULL | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, false), "GenericClippedStatsTest(): NULL data"); + ok(genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true), "GenericClippedStatsTest(): F32 data"); + ok(genericClippedStatsTest(TST_IN_F64 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true), "GenericClippedStatsTest(): F64 data"); + ok(genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_F32 | TST_MASK_NULL, NUM_DATA, 1, true), "GenericClippedStatsTest(): non-NULL error vector"); + ok(genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_U8, NUM_DATA, 1, true), "GenericClippedStatsTest(): non-NULL mask vector"); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); +} Index: /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.c (revision 12167) @@ -0,0 +1,828 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +// example tap lines: +// ok(condition, "condition succeeded"); +// skip_start(condition, Nskip, "Skipping tests because of failure"); + +# define DTIME(A,B) ((A.tv_sec - B.tv_sec) + 1e-6*(A.tv_usec - B.tv_usec)) +struct timeval start, mark; + +int main (void) +{ + plan_tests(68); + + diag("psStats timing tests"); + + // build a gauss-deviate vector (mean = 0.0, sigma = 1.0) for tests + psRandom *seed = psRandomAlloc (PS_RANDOM_TAUS, 0); + psVector *rnd = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd->n; i++) { + rnd->data.F32[i] = psRandomGaussian (seed); + } + + diag ("timing for sample mean"); + /********** SAMPLE MEAN ***********/ + // test stat sample mean (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN); + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.1, "sample mean %f (mask: 0, range: 0): %.3f sec", stats->sampleMean, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample mean (mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN); + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.12, "sample mean %f (mask: 1, range: 0): %.3f sec", stats->sampleMean, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample mean (no mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.18, "sample mean %f (mask: 0, range: 1): %.3f sec", stats->sampleMean, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample mean (mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.2, "sample mean %f (mask: 1, range: 1): %.3f sec", stats->sampleMean, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample mean (mask, range : small sample) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (10, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[3] = 1; + int nOld = rnd->n; + + rnd->n = 10; + gettimeofday (&start, NULL); + for (int i = 0; i < 1000000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + rnd->n = nOld; + + psF64 delta = DTIME(mark, start); + ok (delta < 0.2, "sample mean %f (mask: 1, range: 1): %.3f sec", stats->sampleMean, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for sample median"); + /********** SAMPLE MEDIAN ***********/ + // test stat sample median (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN); + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.8, "sample median %f (mask: 0, range: 0): %.3f sec", stats->sampleMedian, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample median (mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN); + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.8, "sample median %f (mask: 1, range: 0): %.3f sec", stats->sampleMedian, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample median (no mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.8, "sample median %f (mask: 0, range: 1): %.3f sec", stats->sampleMedian, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample median (mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.8, "sample median %f (mask: 1, range: 1): %.3f sec", stats->sampleMedian, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for sample stdev"); + /********** SAMPLE STDEV ***********/ + // test stat sample stdev (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_STDEV); + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.2, "sample stdev %f (mask: 0, range: 0): %.3f sec", stats->sampleStdev, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample stdev (mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_STDEV); + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.27, "sample stdev %f (mask: 1, range: 0): %.3f sec", stats->sampleStdev, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample stdev (no mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_STDEV | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 0); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.36, "sample stdev %f (mask: 0, range: 1): %.3f sec", stats->sampleStdev, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample stdev (mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_STDEV | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.42, "sample stdev %f (mask: 1, range: 1): %.3f sec", stats->sampleStdev, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test stat sample stdev (mask, range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_STDEV | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (10, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[1] = 1; + int nOld = rnd->n; + + rnd->n = 10; + gettimeofday (&start, NULL); + for (int i = 0; i < 1000000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + rnd->n = nOld; + + psF64 delta = DTIME(mark, start); + ok (delta < 0.42, "sample stdev %f (mask: 1, range: 1): %.3f sec", stats->sampleStdev, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for sample min,max"); + /*************** MIN,MAX ******************/ + // test stat min,max (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX); + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.17, "sample min,max %f,%f (mask: 0, range: 0): %.3f sec", stats->min, stats->max, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + // test stat min,max (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX); + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.18, "sample min,max %f,%f (mask: 1, range: 0): %.3f sec", stats->min, stats->max, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + // test stat min,max (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.22, "sample min,max %f,%f (mask: 0, range: 1): %.3f sec", stats->min, stats->max, delta); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + // test stat min,max (no mask, no range) + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX | PS_STAT_USE_RANGE); + stats->min = -10; + stats->max = +10; + psVector *mask = psVectorAlloc (1000, PS_TYPE_U8); + psVectorInit (mask, 0); + mask->data.U8[100] = 1; + mask->data.U8[200] = 1; + mask->data.U8[300] = 1; + + gettimeofday (&start, NULL); + for (int i = 0; i < 10000; i++) + { + psVectorStats (stats, rnd, NULL, mask, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.26, "sample min,max %f,%f (mask: 1, range: 1): %.3f sec", stats->min, stats->max, delta); + psFree (stats); + psFree (mask); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for clipped stats"); + /********** CLIPPED STATS ***********/ + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + psVector *rnd2 = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.3, "clipped mean %f, stdev %f (mask: 0, range: 0): %.3f sec (1000 pts / 1000 loops)", stats->clippedMean, stats->clippedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + psVector *rnd2 = psVectorAlloc (3000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.5, "clipped mean %f, stdev %f (mask: 0, range: 0): %.3f sec (3000 pts / 1000 loops)", stats->clippedMean, stats->clippedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + psVector *rnd2 = psVectorAlloc (10000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 1.2, "clipped mean %f, stdev %f (mask: 0, range: 0): %.3f sec (10000 pts / 1000 loops)", stats->clippedMean, stats->clippedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for robust stats"); + /********** ROBUST STATS ***********/ + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_ROBUST_QUARTILE); + psVector *rnd2 = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.3, "robust mean %f, stdev %f (mask: 0, range: 0): %.3f sec (1000 pts / 1000 loops)", stats->robustMedian, stats->robustStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_ROBUST_QUARTILE); + psVector *rnd2 = psVectorAlloc (3000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.5, "robust mean %f, stdev %f (mask: 0, range: 0): %.3f sec (3000 pts / 1000 loops)", stats->robustMedian, stats->robustStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_ROBUST_QUARTILE); + psVector *rnd2 = psVectorAlloc (10000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 1.2, "robust mean %f, stdev %f (mask: 0, range: 0): %.3f sec (10000 pts / 1000 loops)", stats->robustMedian, stats->robustStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for fitted stats"); + /********** FITTED TIMING ***********/ + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV); + psVector *rnd2 = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.7, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (1000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV); + psVector *rnd2 = psVectorAlloc (3000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.8, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (3000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV); + psVector *rnd2 = psVectorAlloc (10000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.2, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (10000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("timing for fitted (v2) stats"); + /********** FITTED (v2) TIMING ***********/ + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2); + psVector *rnd2 = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.7, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (1000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2); + psVector *rnd2 = psVectorAlloc (3000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 0.8, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (3000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2); + psVector *rnd2 = psVectorAlloc (10000, PS_TYPE_F32); + for (int i = 0; i < rnd2->n; i++) + { + rnd2->data.F32[i] = psRandomGaussian (seed); + } + + gettimeofday (&start, NULL); + for (int i = 0; i < 1000; i++) + { + psVectorStats (stats, rnd2, NULL, NULL, 1); + } + gettimeofday (&mark, NULL); + psF64 delta = DTIME(mark, start); + ok (delta < 2.2, "fitted mean %f, stdev %f (mask: 0, range: 0): %.3f sec (10000 pts / 1000 loops)", stats->fittedMean, stats->fittedStdev, delta); + psFree (stats); + psFree (rnd2); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("compare sample, robust, and fitted mean and stdev to theoretical"); + // compare SAMPLE, FITTED, ROBUST mean to theoretical + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV); + psVector *sample = psVectorAlloc (1000, PS_TYPE_F32); + psVector *robust = psVectorAlloc (1000, PS_TYPE_F32); + psVector *fitted = psVectorAlloc (1000, PS_TYPE_F32); + + for (int i = 0; i < 1000; i++) + { + // generate a new sample + for (int j = 0; j < rnd->n; j++) { + rnd->data.F32[j] = psRandomGaussian (seed); + } + // measure the stats + psVectorStats (stats, rnd, NULL, NULL, 1); + sample->data.F32[i] = stats->sampleMean; + robust->data.F32[i] = stats->robustMedian; + fitted->data.F32[i] = stats->fittedMean; + } + psFree (stats); + + stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psVectorStats (stats, sample, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "sample mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psVectorStats (stats, robust, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "robust mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psVectorStats (stats, fitted, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "fitted mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psFree (stats); + psFree (sample); + psFree (robust); + psFree (fitted); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + diag ("compare sample, robust, and fitted mean and stdev to theoretical"); + // compare SAMPLE, FITTED_V2, ROBUST mean to theoretical + { + psMemId id = psMemGetId(); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV | PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2); + psVector *sample = psVectorAlloc (1000, PS_TYPE_F32); + psVector *robust = psVectorAlloc (1000, PS_TYPE_F32); + psVector *fitted = psVectorAlloc (1000, PS_TYPE_F32); + + for (int i = 0; i < 1000; i++) + { + // generate a new sample + for (int j = 0; j < rnd->n; j++) { + rnd->data.F32[j] = psRandomGaussian (seed); + } + // measure the stats + psVectorStats (stats, rnd, NULL, NULL, 1); + sample->data.F32[i] = stats->sampleMean; + robust->data.F32[i] = stats->robustMedian; + fitted->data.F32[i] = stats->fittedMean; + } + psFree (stats); + + stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psVectorStats (stats, sample, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "sample mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psVectorStats (stats, robust, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "robust mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psVectorStats (stats, fitted, NULL, NULL, 1); + ok (stats->sampleStdev < 2/sqrt(1000), "fitted mean %f, stdev %f (1000 tries)", stats->sampleMean, stats->sampleStdev); + psFree (stats); + psFree (sample); + psFree (robust); + psFree (fitted); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} + Index: /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.txt =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.txt (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStatsTiming.txt (revision 12167) @@ -0,0 +1,47 @@ + +Running tap_psStatsTiming on alala (dual AMD Opteron, 64bit, 2.2GHz) +yields the following timing results: + +# timing for sample mean (1000 loops of 10000 pts) +ok 1 - sample mean 0.009719 (mask: 0, range: 0): 0.072 sec +ok 3 - sample mean 0.011060 (mask: 1, range: 0): 0.119 sec +ok 5 - sample mean 0.009719 (mask: 0, range: 1): 0.170 sec +ok 7 - sample mean 0.011060 (mask: 1, range: 1): 0.198 sec + +# timing for sample median (1000 loops of 10000 pts) +ok 9 - sample median 0.021781 (mask: 0, range: 0): 2.625 sec +ok 11 - sample median 0.023795 (mask: 1, range: 0): 2.646 sec +ok 13 - sample median 0.021781 (mask: 0, range: 1): 2.703 sec +ok 15 - sample median 0.023795 (mask: 1, range: 1): 2.716 sec + +# timing for sample stdev (1000 loops of 10000 pts) +ok 17 - sample stdev 0.964753 (mask: 0, range: 0): 0.193 sec +ok 19 - sample stdev 0.965887 (mask: 1, range: 0): 0.257 sec +ok 21 - sample stdev 0.964753 (mask: 0, range: 1): 0.353 sec +ok 23 - sample stdev 0.965887 (mask: 1, range: 1): 0.401 sec + +# timing for sample min,max (1000 loops of 10000 pts) +ok 25 - sample min,max -3.205688,2.706797 (mask: 0, range: 0): 0.125 sec +ok 27 - sample min,max -3.205688,2.706797 (mask: 1, range: 0): 0.152 sec +ok 29 - sample min,max -3.205688,2.706797 (mask: 0, range: 1): 0.201 sec +ok 31 - sample min,max -3.205688,2.706797 (mask: 1, range: 1): 0.238 sec + +# timing for clipped stats +not ok 33 - clipped mean -0.047714, stdev 0.991979 (mask: 0, range: 0): 0.369 sec (1000 pts / 1000 loops) +not ok 35 - clipped mean 0.023963, stdev 0.972186 (mask: 0, range: 0): 1.219 sec (3000 pts / 1000 loops) +not ok 37 - clipped mean -0.007020, stdev 0.985410 (mask: 0, range: 0): 4.883 sec (10000 pts / 1000 loops) + +NOTE: these fail because they are being compared to the 'robust' stats +limits below. The clipped mean algorithm should not be so slow (and +apparently non-linear in npts). + +# timing for robust stats +ok 39 - robust mean 0.123348, stdev 1.014896 (mask: 0, range: 0): 0.187 sec (1000 pts / 1000 loops) +ok 41 - robust mean -0.006812, stdev 0.974468 (mask: 0, range: 0): 0.382 sec (3000 pts / 1000 loops) +ok 43 - robust mean -0.013591, stdev 1.001539 (mask: 0, range: 0): 1.076 sec (10000 pts / 1000 loops) + +# timing for fitted stats +ok 45 - fitted mean -0.029859, stdev 0.982947 (mask: 0, range: 0): 0.381 sec (1000 pts / 1000 loops) +ok 47 - fitted mean 0.014660, stdev 0.956168 (mask: 0, range: 0): 0.727 sec (3000 pts / 1000 loops) +ok 49 - fitted mean -0.008402, stdev 1.001366 (mask: 0, range: 0): 1.914 sec (10000 pts / 1000 loops) + Index: /branches/rel-1-1/psLib/test/math/tap_psStats_Sample_01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tap_psStats_Sample_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tap_psStats_Sample_01.c (revision 12167) @@ -0,0 +1,608 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +// example tap lines: +// ok(condition, "condition succeeded"); +// skip_start(condition, Nskip, "Skipping tests because of failure"); + +static float yraw_01[] = { + 11, 16, 13, 17, 17, 17, 23, 14, 18, 15, + 16, 13, 12, 17, 19, 15, 21, 18, 18, 17, + 15, 20, 26, 14, 12, 13, 19, 16, 14, 21, + 16, 12, 18, 14, 18, 25, 20, 16, 19, 16, + 14, 12, 20, 13, 12, 21, 16, 18, 11, 22, + 16, 23, 20, 21, 54, 12, 12, 16, 17, 14, + 18, 21, 19, 18, 16, 19, 18, 23, 21, 20, + 20, 22, 15, 13, 14, 15, 19, 16, 15, 23, + 14, 25, 18, 16, 20, 20, 19, 16, 22, 11, + 19, 12, 14, 21, 19, 15, 16, 35, 20, 18, + 14, 13, 18, 18, 19, 23, 19, 19, 13, 288, + 19, 17, 17, 19, 12, 18, 15, 14, 13, 16, + 10, 12, 22, 15, 13, 14, 15, 22, 16, 18, + 13, 19, 17, 17, 17, 16, 16, 15, 15, 24, + 25, 45, 23, 19, 18, 23, 12, 18, 20, 11, + 25, 16, 15, 15, 200, 16, 13, 19, 11, 16, + 19, 16, 13, 14, 12, 10, 17, 20, 25, 17, + 14, 13, 20, 9, 17, 13, 19, 16, 27, 19, + 20, 16, 15, 17, 15, 18, 20, 17, 19, 13, + 21, 11, 20, 19, 12, 17, 23, 8, 17, 13, + 11, 16, 29, 16, 16, 20, 13, 19, 20, 19, + 18, 22, 21, 20, 15, 11, 17, 17, 15, 17, + 13, 16, 19, 20, 21, 20, 18, 17, 99, 14, + 13, 20, 16, 18, 12, 15, 21, 17, 18, 20, + 19, 12, 9, 24, 10, 13, 18, 16, 15, 19, + 13, 19, 12, 22, 22, 20, 17, 13, 14, 14, + 20, 10, 19, 19, 18, 20, 15, 14, 13, 20, + 13, 14, 17, 19, 16, 25, 17, 15, 11, 19, + 19, 14, 15, 15, 12, 14, 16, 13, 20, 16, + 10, 15, 20, 21, 19, 17, 12, 18, 17, 17, + 20, 14, 19, 17, 19, 7, 12, 17, 24, 18, + 17, 13, 14, 16, 20, 15, 10, 18, 13, 18, + 17, 16, 13, 13, 21, 13, 15, 11, 15, 16, + 18, 13, 11, 18, 13, 12, 15, 17, 16, 19, + 12, 14, 20, 13, 26, 16, 20, 14, 12, 18, + 15, 24, 14, 12, 19, 19, 12, 15, 18, 20, + 16, 17625, 17, 17, 14, 22, 15, 17, 19, 17, + 15, 16, 13, 14, 18, 16, 11, 20, 20, 14, + 19, 16, 11, 12, 18, 13, 8, 20, 10, 17, + 18, 17, 21, 16, 18, 16, 16, 22, 19, 12, + 15, 14, 21, 13, 16, 11, 17, 12, 19, 18, + 18, 15, 18, 12, 17, 24, 12, 20, 21, 14, + 21, 14, 21, 11, 19, 13, 22, 15, 17, 21, + 21, 22, 16, 14, 21, 26, 17, 21, 20, 11, + 12, 15, 21, 19, 19, 17, 22, 16, 17, 18, + 13, 12, 13, 88, 14, 14, 9, 19, 18, 12, + 20, 16, 16, 14, 17, 19, 19, 6, 16, 15, + 20, 17, 10, 19, 15, 21, 20, 9, 14, 17, + 10, 27, 22, 18, 11, 19, 15, 15, 19, 13, + 15, 24, 22, 20, 19, 14, 16, 17, 12, 15, + 22, 12, 18, 19, 22, 18, 23, 19, 15, 15, + 8, 13, 24, 15, 12, 30, 16, 18, 15, 21, + 18, 14, 18, 20, 17, 12, 20, 19, 12, 17, + 13, 18, 20, 16, 23, 12, 17, 9, 18, 13, + 11, 15, 14, 20, 19, 16, 12, 19, 19, 18, + 22, 23, 18, 23, 18, 17, 19, 22, 15, 11, + 17, 20, 13, 19, 18, 17, 18, 20, 13, 14, + 14, 10, 22, 21, 13, 19, 14, 16, 14, 17, + 19, 14, 14, 26, 21, 18, 20, 11, 18, 19, + 20, 18, 15, 15, 19, 18, 15, 17, 12, 15, + 20, 18, 14, 22, 12, 13, 23, 22, 17, 10, + 15, 19, 18, 18, 17, 16, 19, 13, 19, 23, + 15, 13, 10, 14, 16, 14, 17, 15, 16, 20, + 17, 12, 20, 11, 19, 11, 20, 9, 27, 23, + 17, 18, 18, 19, 20, 15, 15, 18, 13, 13, + 21, 15, 18, 13, 19, 23, 19, 8, 21, 19, + 9, 22, 15, 14, 24, 17, 19, 15, 22, 19, + 18, 13, 11, 18, 13, 21, 17, 12, 13, 18, + 11, 16, 19, 16, 19, 24, 15, 16, 17, 18, + 19, 17, 19, 20, 18, 14, 16, 15, 20, 13, + 13, 16, 10, 15, 29, 13, 22, 18, 11, 13, + 18, 23, 13, 11, 19, 25, 18, 17, 17, 20, + 16, 16, 22, 12, 20, 39, 14, 21, 19, 10, + 61, 18, 24, 16, 14, 20, 20, 19, 16, 18, + 11, 16, 16, 20, 16, 7, 16, 14, 12, 24, + 20, 16, 17, 15, 11, 20, 13, 12, 25, 15, + 13, 15, 18, 12, 6, 18, 15, 24, 11, 15, + 14, 12, 14, 15, 15, 17, 20, 14, 21, 17, + 14, 19, 22, 13, 15, 12, 17, 19, 23, 15, + 17, 25, 15, 14, 23, 6, 17, 9, 10, 16, + 17, 17, 16, 18, 26, 15, 17, 23, 14, 11, + 22, 19, 21, 16, 15, 21, 15, 10, 22, 14, + 23, 12, 16, 20, 13, 16, 11, 19, 12, 19, + 16, 15, 43, 18, 16, 13, 27, 12, 13, 14, + 18, 15, 14, 18, 19, 14, 15, 21, 15, 20, + 13, 21, 19, 21, 18, 21, 13, 24, 22, 14, + 22, 14, 17, 21, 15, 17, 14, 16, 21, 11, + 17, 21, 26, 9, 12, 17, 15, 13, 13, 16, + 25, 23, 17, 13, 20, 16, 19, 17, 18, 19, + 17, 17, 20, 17, 17, 15, 20, 15, 10, 13, + 11, 18, 9, 19, 18, 28, 18, 19, 18, 15, + 22, 16, 16, 17, 15, 24, 19, 16, 10, 18, + 16, 15, 32, 17, 15, 17, 18, 11, 25, 15, + 19, 11, 20, 17, 17, 20, 18, 18, 16, 22, + 19, 15, 22, 16, 14, 21, 14, 14, 13, 14, + 14, 19, 21, 18, 18, 19, 12, 13, 19, 19, + 19, 16, 18, 16, 13, 17, 25, 17, 18, 16, + 25, 25, 19, 20, 13, 23, 13, 14, 18, 18, + 20, 27, 15, 23, 23, 17, 25, 13, 12, 19, + 17, 13, 25, 18, 13, 12, 15, 18, 16, 12, + }; + +static float yraw_02[] = { + 428, 405, 820, 581, 629, 396, 383, 400, 631, 413, + 614, 379, 646, 1629, 353, 2748, 400, 654, 1242, 556, + 1423, 524, 7261, 1997, 697, 1389, 818, 26580, 495, 26915, + 320, 1242, 592, 490, 580, 651, 421, 487, 1644, 1909, + 2791, 551, 386, 426, 504, 995, 598, 1235, 481, 589, + 619, 1608, 385, 687, 1119, 463, 1803, 338, 427, 2509, + 503, 426, 1305, 425, 394, 1173, 772, 672, 2239, 1171, + 1117, 583, 1028, 1837, 2287, 413, 762, 2109, 955, 959, + 1682, 1682, 1555, 481, 663, 987, 415, 668, 417, 1045, + 2094, 464, 3437, 1566, 487, 1067, 975, 1217, 6089, 383, + 394, 415, 1117, 522, 673, 1567, 559, 15690, 325, 591, + 607, 634, 966, 293, 1178, 334, 526, 552, 994, 1852, + 2689, 1175, 1221, 410, 933, 1106, 1094, 7888, 461, 2142, + 600, 395, 1963, 663, 882, 582, 456, 715, 459, 1527, + 1948, 1074, 1035, 556, 519, 624, 728, 415, 735, 414, + 392, 586, 745, 624, 588, 912, 1550, 2030, 451, 25635, + 774, 395, 452, 593, 644, 1807, 442, 33256, 1916, 1804, + 13222, 538, 1054, 433, 2055, 832, 545, 924, 2808, 597, + 456, 833, 812, 780, 422, 1189, 617, 1613, 1349, 30099, + 561, 2128, 1225, 1100, 415, 950, 403, 34824, 496, 388, + 670, 372, 503, 363, 604, 405, 1239, 612, 300, 17802, + 1560, 1123, 380, 2398, 1156, 1007, 1795, 311, 370, 1905, + 845, 1298, 1711, 1962, 408, 1421, 638, 657, 2339, 2242, + 3202, 2687, 1478, 618, 19826, 1263, 359, 888, 346, 673, + 487, 500, 2167, 1441, 382, 574, 360, 859, 2557, 441, + 1870, 361, 524, 864, 1910, 1993, 831, 542, 815, 677, + 321, 1018, 655, 1076, 680, 779, 518, 19929, 429, 514, + 972, 946, 388, 508, 1019, 316, 17112, 640, 2896, 1328, + 805, 432, 345, 858, 596, 488, 2105, 427, 1761, 711, + 689, 1003, 454, 427, 499, 468, 922, 394, 400, 2056, + 431, 433, 327, 1635, 438, 462, 602, 973, 761, 363, + 2206, 2335, 2451, 332, 1927, 1495, 649, 1112, 1036, 1360, + 539, 931, 1396, 408, 332, 871, 449, 508, 368, 1213, + 400, 479, 402, 1787, 426, 720, 846, 869, 650, 414, + 413, 19125, 385, 967, 1109, 22290, 918, 1752, 567, 1766, + 386, 1170, 619, 1963, 743, 605, 740, 517, 623, 631, + 430, 776, 750, 649, 778, 922, 1194, 868, 489, 770, + 387, 406, 545, 563, 1633, 469, 3058, 1600, 918, 1546, + 1969, 1611, 806, 699, 583, 581, 803, 657, 394, 1205, + 388, 709, 1174, 1849, 1571, 1051, 487, 1301, 1189, 1626, + 578, 398, 1514, 350, 501, 535, 1079, 1743, 1426, 1074, + 669, 3664, 757, 517, 1027, 1097, 1264, 2322, 359, 527, + 664, 560, 558, 22642, 331, 896, 1470, 934, 467, 1019, + 727, 424, 353, 601, 1097, 832, 510, 520, 1185, 1420, + 363, 965, 619, 2322, 4277, 20030, 2087, 2823, 560, 19312, + 1973, 770, 356, 832, 2467, 342, 660, 18751, 1706, 313, + 1069, 2490, 1238, 1013, 1471, 3348, 760, 871, 723, 397, + 1104, 371, 2382, 27958, 621, 339, 465, 616, 2282, 524, + 601, 379, 587, 534, 1408, 1260, 717, 1709, 965, 434, + 611, 1344, 387, 1660, 539, 831, 401, 842, 864, 1453, + 1746, 468, 391, 398, 376, 932, 342, 483, 824, 384, + 991, 591, 443, 419, 1112, 598, 379, 549, 511, 1626, + 1221, 14651, 2117, 1570, 899, 1063, 994, 2198, 424, 380, + 2611, 3374, 533, 565, 1098, 300, 857, 1517, 720, 1785, + 659, 9076, 1145, 476, 1588, 729, 551, 667, 1041, 364, + 447, 406, 1271, 1515, 345, 343, 577, 449, 571, 1066, + 1161, 1251, 332, 1669, 393, 5503, 466, 481, 18535, 420, + 1910, 1093, 4162, 448, 660, 395, 485, 450, 520, 461, + 406, 2414, 1150, 714, 411, 18470, 1054, 401, 582, 318, + 404, 434, 517, 3252, 1714, 997, 481, 833, 504, 407, + 490, 1942, 439, 3112, 910, 605, 727, 1347, 954, 565, + 493, 551, 535, 416, 393, 629, 4489, 395, 18156, 487, + 504, 618, 438, 1001, 21729, 644, 1340, 390, 355, 716, + 911, 575, 541, 2158, 8211, 959, 1004, 1370, 335, 611, + 385, 1382, 788, 1135, 929, 2275, 653, 549, 549, 1980, + 390, 556, 765, 1185, 1038, 493, 476, 387, 1980, 3695, + 808, 297, 1124, 829, 378, 835, 3024, 1273, 613, 1330, + 473, 15685, 3112, 628, 358, 1317, 607, 2270, 538, 808, + 1083, 287, 1598, 617, 438, 398, 435, 464, 476, 554, + 519, 507, 1171, 886, 717, 545, 1698, 1063, 533, 903, + 464, 2416, 1608, 18915, 337, 1222, 323, 981, 408, 1482, + 1268, 1413, 967, 392, 1373, 19138, 1133, 867, 1661, 2124, + 508, 304, 503, 406, 14095, 1091, 370, 435, 1231, 764, + 499, 2387, 3092, 361, 530, 945, 878, 1965, 5488, 1967, + 1148, 484, 565, 490, 995, 1807, 733, 331, 1273, 1231, + 459, 14455, 1510, 555, 7084, 841, 1024, 3561, 792, 440, + 1821, 574, 429, 1085, 691, 791, 667, 1684, 622, 1019, + 1704, 1105, 899, 307, 1987, 352, 639, 416, 428, 2525, + 312, 888, 444, 542, 364, 327, 400, 1629, 28582, 628, + 332, 513, 452, 361, 967, 21400, 544, 1103, 1134, 29599, + 638, 16500, 1148, 572, 364, 776, 794, 1967, 447, 1015, + 433, 619, 417, 897, 3099, 1957, 809, 401, 442, 529, + 433, 350, 895, 18687, 390, 553, 565, 1259, 21421, 1340, + 306, 2057, 473, 338, 889, 320, 974, 620, 1074, 1048, + 325, 300, 1867, 415, 358, 1721, 362, 436, 435, 484, + 1478, 1907, 590, 2146, 7816, 583, 381, 1610, 544, 376, + 2144, 589, 952, 389, 1145, 483, 958, 854, 814, 588, + 25947, 659, 830, 1045, 408, 880, 2352, 1651, 1288, 1022, + 1976, 1292, 838, 411, 796, 375, 879, 2339, 1047, 945, + 1922, 1322, 455, 358, 677, 25142, 977, 344, 1305, 421, + 1119, 682, 823, 1054, 554, 485, 1732, 1980, 326, 444, + 1762, 738, 15028, 413, 349, 2474, 2837, 1074, 763, 1400, + 686, 1184, 491, 6502, 399, 2194, 384, 968, 403, 462, + 499, 555, 1361, 568, 1315, 3912, 514, 514, 1066, 519, + 1024, 1307, 1056, 402, 914, 513, 444, 347, 406, 506, + 442, 614, 356, 1222, 597, 1162, 515, 22060, 2408, 2930, + 5935, 1057, 747, 1396, 400, 1576, 1212, 8900, 318, 688, + 2122, 1771, 316, 758, 445, 381, 1115, 394, 2284, 1515, + 1877, 637, 1279, 2291, + }; + +static float yraw_03[] = { + 183.6000061, 171.3600006, 182.5800018, 178.5, 176.4600067, + 176.4600067, 171.3600006, 178.5, 183.6000061, 175.4400024, + 159.1199951, 180.5399933, 183.6000061, 187.6799927, 175.4400024, + 181.5599976, 174.4199982, 179.5200043, 180.5399933, 187.6799927, + 183.6000061, 171.3600006, 177.4799957, 192.7799988, 184.6199951, + 176.4600067, 178.5, 182.5800018, 173.3999939, 191.7599945, + 202.9799957, 167.2799988, 181.5599976, 185.6399994, 173.3999939, + 159.1199951, 178.5, 188.6999969, 179.5200043, 178.5, + 184.6199951, 175.4400024, 186.6600037, 179.5200043, 183.6000061, + 182.5800018, 173.3999939, 181.5599976, 184.6199951, 177.4799957, + 162.1799927, 186.6600037, 163.1999969, 199.9199982, 173.3999939, + 170.3399963, 184.6199951, 190.7400055, 173.3999939, 178.5, + 189.7200012, 192.7799988, 166.2599945, 187.6799927, 174.4199982, + 176.4600067, 181.5599976, 199.9199982, 193.8000031, 170.3399963, + 182.5800018, 199.9199982, 183.6000061, 160.1399994, 184.6199951, + 195.8399963, 173.3999939, 189.7200012, 192.7799988, 162.1799927, + 174.4199982, 190.7400055, 175.4400024, 192.7799988, 181.5599976, + 185.6399994, 184.6199951, 166.2599945, 189.7200012, 192.7799988, + 183.6000061, 190.7400055, 188.6999969, 174.4199982, 184.6199951, + 186.6600037, 182.5800018, 173.3999939, 171.3600006, 166.2599945, + 166.2599945, 176.4600067, 147.8999939, 187.6799927, 166.2599945, + 173.3999939, 179.5200043, 166.2599945, 169.3200073, 172.3800049, + 174.4199982, 195.8399963, 192.7799988, 177.4799957, 181.5599976, + 163.1999969, 171.3600006, 194.8200073, 159.1199951, 173.3999939, + 182.5800018, 178.5, 179.5200043, 184.6199951, 179.5200043, + 164.2200012, 191.7599945, 177.4799957, 186.6600037, 168.3000031, + 168.3000031, 168.3000031, 180.5399933, 179.5200043, 175.4400024, + 174.4199982, 184.6199951, 186.6600037, 164.2200012, 169.3200073, + 187.6799927, 189.7200012, 166.2599945, 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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + +int main (void) +{ + plan_tests(21); + + diag("psStats Tests with sample SDSS data from RHL and Megacam from EAM"); + diag("this file does not yet define a specific test"); + diag("the fitted mean is currently wrong for these two data sets"); + + { + psMemId id = psMemGetId(); + + diag("sample 1 : problem with integer-binned data driven to tiny sigma values"); + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV | + PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | + PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV | + PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | + PS_STAT_SAMPLE_STDEV | PS_STAT_USE_BINSIZE); + stats->binsize = 1.0; + + + // copy data in static array + int nPts = sizeof(yraw_01) / sizeof (float); + psVector *y = psVectorAlloc (nPts, PS_TYPE_F32); + for (int i = 0; i < y->n; i++) { + y->data.F32[i] = yraw_01[i]; + } + + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "sample mean %f, stdev %f", stats->sampleMean, stats->sampleStdev); + ok (1, "sample median %f, stdev %f", stats->sampleMedian, stats->sampleStdev); + ok (1, "clipped mean %f, stdev %f", stats->clippedMean, stats->clippedStdev); + ok (1, "robust median %f, stdev %f", stats->robustMedian, stats->robustStdev); + ok (1, "fitted mean %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2 | PS_STAT_USE_BINSIZE); + stats->binsize = 1.0; + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "fitted mean v2 %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + psFree (y); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + { + psMemId id = psMemGetId(); + + diag("sample 2"); + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV | + PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | + PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV | + PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | + PS_STAT_SAMPLE_STDEV); + + // copy data in static array + int nPts = sizeof(yraw_02) / sizeof (float); + psVector *y = psVectorAlloc (nPts, PS_TYPE_F32); + for (int i = 0; i < y->n; i++) { + y->data.F32[i] = yraw_02[i]; + } + + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "sample mean %f, stdev %f", stats->sampleMean, stats->sampleStdev); + ok (1, "sample median %f, stdev %f", stats->sampleMedian, stats->sampleStdev); + ok (1, "clipped mean %f, stdev %f", stats->clippedMean, stats->clippedStdev); + ok (1, "robust median %f, stdev %f", stats->robustMedian, stats->robustStdev); + ok (1, "fitted mean %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2 | PS_STAT_USE_BINSIZE); + stats->binsize = 1.0; + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "fitted mean v2 %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + psFree (y); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + diag("sample 3"); + psStats *stats = psStatsAlloc (PS_STAT_FITTED_MEAN | PS_STAT_FITTED_STDEV | + PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV | + PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV | + PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN | + PS_STAT_SAMPLE_STDEV | PS_STAT_USE_BINSIZE); + stats->binsize = 1.0; + + + // copy data in static array + int nPts = sizeof(yraw_03) / sizeof (float); + psVector *y = psVectorAlloc (nPts, PS_TYPE_F32); + for (int i = 0; i < y->n; i++) { + y->data.F32[i] = yraw_03[i]; + } + + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "sample mean %f, stdev %f", stats->sampleMean, stats->sampleStdev); + ok (1, "sample median %f, stdev %f", stats->sampleMedian, stats->sampleStdev); + ok (1, "clipped mean %f, stdev %f", stats->clippedMean, stats->clippedStdev); + ok (1, "robust median %f, stdev %f", stats->robustMedian, stats->robustStdev); + ok (1, "fitted mean %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + stats = psStatsAlloc (PS_STAT_FITTED_MEAN_V2 | PS_STAT_FITTED_STDEV_V2 | PS_STAT_USE_BINSIZE); + stats->binsize = 1.0; + psVectorStats (stats, y, NULL, NULL, 1); + ok (1, "fitted mean v2 %f, stdev %f", stats->fittedMean, stats->fittedStdev); + psFree (stats); + + psFree (y); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/math/tst_psFunc01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psFunc01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psFunc01.c (revision 12167) @@ -0,0 +1,77 @@ +/***************************************************************************** + This routine must ensure that the psGaussian() shall evaluate a + specified Gaussian at some X. + + It also tests the p_psGaussianDev() procedure. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psMemory.h" +#include "psPolynomial.h" +#define MY_MEAN 30.0 +#define MY_STDEV 2.0 +#define N 30 +psS32 main() +{ + psLogSetFormat("HLNM"); + psS32 testStatus = true; + float x = 0.0; + psS32 memLeaks; + psS32 currentId = psMemGetId(); + psVector *myGaussData = NULL; + printPositiveTestHeader(stdout, + "psPolynomial functions", + "psGaussian()"); + + + for (x = 0.0 ; x < (MY_MEAN * 2.0) ; x+= 1.0) { + printf("normal psGaussian(%f) is %f\n", x, psGaussian(x, MY_MEAN, MY_STDEV, true)); + x = x + 1.0; + } + + for (x = 0.0 ; x < (MY_MEAN * 2.0) ; x+= 1.0) { + printf("NON-normal psGaussian(%f) is %f\n", x, psGaussian(x, MY_MEAN, MY_STDEV, false)); + x = x + 1.0; + } + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, + "psPolynomial functions", + "psGaussian()", + testStatus); + + + printPositiveTestHeader(stdout, + "psPolynomial functions", + "p_psGaussianDev()"); + + myGaussData = p_psGaussianDev(MY_MEAN, MY_STDEV, N); + for (psS32 i = 0; i < N ; i++) { + printf("Gaussian Deviate [%d] is %f\n", i, myGaussData->data.F32[i]); + } + + if ( myGaussData->type.type != PS_TYPE_F32) { + psAbort("p_psGaussianDev did not return a vector of type F32"); + } + + psFree(myGaussData); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, + "psPolynomial functions", + "p_psGaussianDev()", + testStatus); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psHist00.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psHist00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psHist00.c (revision 12167) @@ -0,0 +1,135 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + allocated and deallocated by the procedure psHistogramAlloc(). + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psMemory.h" +#define LOWER 20.0 +#define UPPER 30.0 + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + psHistogram *myHist = NULL; + psS32 testStatus = true; + psS32 memLeaks = 0; + psS32 i = 0; + psS32 nb = 0; + psS32 numBins = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + for (nb=0;nb<4;nb++) { + if (nb == 0) + numBins = 1; + if (nb == 1) + numBins = 2; + if (nb == 2) + numBins = 10; + if (nb == 3) + numBins = 20; + /*********************************************************************/ + /* Allocate and initialize data structures */ + /*********************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Allocate the psHistogram structure."); + + myHist = psHistogramAlloc(LOWER, UPPER, numBins); + + if (myHist->nums->n != numBins) { + printf("ERROR: myHist->nums->n is wrong size (%ld)\n", myHist->nums->n); + testStatus = false; + } + + if (myHist->bounds->n != numBins+1) { + printf("ERROR: myHist->bounds->n is wrong size (%ld)\n", myHist->bounds->n); + testStatus = false; + } + + for (i=0;inums->data.F32[i] != 0.0) { + printf("ERROR: myHist->nums->data.U32[%d] not initialized to 0.\n", i); + testStatus = false; + } + myHist->nums->data.F32[i] = 0.0; + } + + if (myHist->minNum != 0) { + printf("ERROR: myHist->minNum is %d\n", myHist->minNum); + testStatus = false; + } + + if (myHist->maxNum != 0) { + printf("myHist->maxNum is %d\n", myHist->maxNum); + testStatus = false; + } + + if (myHist->uniform != true) { + printf("ERROR: myHist->uniform is %d\n", myHist->uniform); + testStatus = false; + } + + for (i=0;ibounds->data.F32[i], + myHist->bounds->data.F32[i+1]); + } + + psMemCheckCorruption(1); + psFree(myHist); + psMemCheckCorruption(1); + + printFooter(stdout, + "psStats functions", + "Allocate the psHistogram structure.", + testStatus); + } + + + printPositiveTestHeader(stdout, + "psStats functions", + "Allocate the psHistogram structure. (UPPER +#include "pslib_strict.h" +#include "psTest.h" +#include "psMemory.h" +#define LOWER 20.0 +#define UPPER 30.0 + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + psHistogram *myHist = NULL; + psVector *myBounds = NULL; + psS32 testStatus = true; + psS32 memLeaks = 0; + psS32 i = 0; + psS32 nb = 0; + psS32 numBins = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + for (nb=0;nb<4;nb++) { + if (nb == 0) + numBins = 1; + if (nb == 1) + numBins = 2; + if (nb == 2) + numBins = 10; + if (nb == 3) + numBins = 20; + /*********************************************************************/ + /* Allocate and initialize data structures */ + /*********************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Allocate the psHistogram structure."); + myBounds = psVectorAlloc(numBins+1, PS_TYPE_F32); + myBounds->n = myBounds->nalloc; + for (i=0;idata.F32[i] = LOWER + ((UPPER - LOWER) / (float) numBins) * + (float) i; + } + myHist = psHistogramAllocGeneric(myBounds); + + if (myHist->nums->n != numBins) { + printf("ERROR: myHist->nums->n is wrong size (%ld)\n", myHist->nums->n); + testStatus = false; + } + + if (myHist->bounds->n != numBins+1) { + printf("ERROR: myHist->bounds->n is wrong size (%ld)\n", myHist->bounds->n); + testStatus = false; + } + + for (i=0;inums->data.F32[i] != 0.0) { + printf("ERROR: myHist->nums->data.F32[%d] not initialized to 0.\n", i); + testStatus = false; + } + myHist->nums->data.F32[i] = 0.0; + } + + if (myHist->minNum != 0) { + printf("ERROR: myHist->minNum is %d\n", myHist->minNum); + testStatus = false; + } + + if (myHist->maxNum != 0) { + printf("myHist->maxNum is %d\n", myHist->maxNum); + testStatus = false; + } + + if (myHist->uniform != false) { + printf("ERROR: myHist->uniform is %d\n", myHist->uniform); + testStatus = false; + } + + for (i=0;ibounds->data.F32[i], + myHist->bounds->data.F32[i+1]); + } + psMemCheckCorruption(1); + psFree(myHist); + psMemCheckCorruption(1); + psFree(myBounds); + + printFooter(stdout, + "psStats functions", + "Allocate the psHistogram structure.", + testStatus); + } + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Deallocate the psHistogram structure."); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + printFooter(stdout, + "psStats functions", + "Deallocate the psHistogram structure.", + testStatus); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psHist02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psHist02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psHist02.c (revision 12167) @@ -0,0 +1,191 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + populated by the procedure psGetArrayHistogram(). + +*****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psMemory.h" +#define MISC_FLOAT_NUMBER 345.0 +#define MISC_INT_NUMBER 345 +#define LOWER 20.0 +#define UPPER 30.0 +#define NUM_DATA 10000 + +psS32 main() +{ + psLogSetFormat("HLNM"); + psHistogram * myHist = NULL; + psHistogram *myHist2 = NULL; + psVector *myData = NULL; + psVector *myMask = NULL; + psS32 testStatus = true; + psS32 memLeaks = 0; + psS32 nb = 0; + psS32 numBins = 0; + psS32 i = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + + /*********************************************************************/ + /* Allocate and initialize data structures */ + /*********************************************************************/ + myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + myData->n = myData->nalloc; + for ( i = 0;i < NUM_DATA;i++ ) { + myData->data.F32[ i ] = LOWER + ( ( UPPER - LOWER ) / ( float ) NUM_DATA ) * ( float ) i; + } + + myMask = psVectorAlloc( NUM_DATA, PS_TYPE_U8 ); + myMask->n = myMask->nalloc; + for ( i = 0;i < NUM_DATA;i++ ) { + if ( i >= ( NUM_DATA / 2 ) ) { + myMask->data.U8[ i ] = 1; + } else { + myMask->data.U8[ i ] = 0; + } + } + + for ( nb = 0;nb < 4;nb++ ) { + if ( nb == 0 ) + numBins = 1; + if ( nb == 1 ) + numBins = 2; + if ( nb == 2 ) + numBins = 10; + if ( nb == 3 ) + numBins = 20; + + /*********************************************************************/ + /* Allocate and Perform Histogram, no mask */ + /*********************************************************************/ + printPositiveTestHeader( stdout, + "psStats functions", + "Allocate and Perform Histogram, no mask" ); + + myHist = psHistogramAlloc( LOWER, UPPER, numBins ); + myHist = psVectorHistogram( myHist, myData, NULL, NULL, 0 ); + + for ( i = 0;i < numBins;i++ ) { + printf( "Bin number %d bounds: (%.2f - %.2f) data (%f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ] ); + } + psMemCheckCorruption( 1 ); + psFree( myHist ); + psMemCheckCorruption( 1 ); + + printFooter( stdout, + "psStats functions", + "Allocate and Perform Histogram, no mask", + testStatus ); + + /*********************************************************************/ + /* Allocate and Perform Histogram with mask */ + /*********************************************************************/ + printPositiveTestHeader( stdout, + "psStats functions", + "Allocate and Perform Histogram with mask" ); + + myHist = psHistogramAlloc( LOWER, UPPER, numBins ); + myHist = psVectorHistogram( myHist, myData, NULL, myMask, 1 ); + + for ( i = 0;i < numBins;i++ ) { + printf( "Bin number %d bounds: (%6.3f - %6.3f) data (%f)\n", i, + myHist->bounds->data.F32[ i ], + myHist->bounds->data.F32[ i + 1 ], + myHist->nums->data.F32[ i ] ); + } + psMemCheckCorruption( 1 ); + psFree( myHist ); + psMemCheckCorruption( 1 ); + + printFooter( stdout, + "psStats functions", + "Allocate and Perform Histogram with mask", + testStatus ); + } + psFree( myMask ); + + printPositiveTestHeader( stdout, + "psStats functions", + "Calling psVectorHistogram() with various NULL inputs." ); + + + + // ******************************************************************** + // Verify the return value is null and program execution doesn't stop, + // if input parameter myHist is null. + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + myHist2 = psVectorHistogram( NULL, myData, NULL, NULL, 0 ); + if ( myHist2 != NULL ) { + printf( "ERROR: myHist2!=NULL\n" ); + testStatus = false; + } + psFree( myData ); + + + // ******************************************************************** + // Verify the return value is the same as the input parameter myHist and + // program execution doesn't stop, if the input parameter myArray is + // null. + + myHist = psHistogramAlloc( LOWER, UPPER, numBins ); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + myHist = psVectorHistogram( myHist, NULL, NULL, NULL, 0 ); + if ( myHist == NULL ) { + printf( "ERROR: myHist==NULL\n" ); + testStatus = false; + } + psFree( myHist ); + + + // exit(0); + // ******************************************************************** + // Verify the return value is the same as the input parameter myHist and + // program execution doesn't stop, if the input parameter myArray has no + // elements. + // NOTE: This code segment is commented out because psVectorAlloc returns + // NULL if called with an N element data. + /* + myData = psVectorAlloc(0, PS_TYPE_F32); + myData->n = myData->nalloc; + myHist = psHistogramAlloc(LOWER, UPPER, numBins); + myHist = psVectorHistogram(myHist, NULL, NULL, NULL, 0); + if (myHist == NULL) { + printf("ERROR: myHist==NULL\n"); + testStatus = false; + } + psFree(myHist); + psFree(myData); + */ + printFooter( stdout, + "psStats functions", + "Calling psVectorHistogram() with various NULL inputs.", + testStatus ); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader( stdout, + "psStats functions", + "Deallocate the psHistogram structure." ); + + psMemCheckCorruption( 1 ); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if ( 0 != memLeaks ) { + psAbort("Memory Leaks! (%d leaks)", memLeaks ); + } + psMemCheckCorruption( 1 ); + + printFooter( stdout, + "psStats functions", + "Deallocate the psHistogram structure.", + testStatus ); + + return ( !testStatus ); +} Index: /branches/rel-1-1/psLib/test/math/tst_psHist03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psHist03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psHist03.c (revision 12167) @@ -0,0 +1,138 @@ +/***************************************************************************** + This routine must ensure that the psHistogram structure is correctly + allocated and deallocated by the procedure psHistogramAllocGeneric() and + that it can be populated correctly by psVectorHistogram(). + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psMemory.h" +#define LOWER 20.0 +#define UPPER 30.0 +#define NUM_DATA 20 + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psHistogramAlloc", 0); + psTraceSetLevel("psHistogramAllocGeneric", 0); + psTraceSetLevel("UpdateHistogramBins", 0); + psTraceSetLevel("psVectorHistogram", 0); + psHistogram *myHist = NULL; + psVector *myBounds = NULL; + psVector *myData = psVectorAlloc( NUM_DATA, PS_TYPE_F32 ); + psS32 testStatus = true; + psS32 memLeaks = 0; + psS32 i = 0; + psS32 nb = 0; + psS32 numBins = 0; + psS32 currentId = 0; + + currentId = psMemGetId(); + + psTraceSetLevel(".psLib", 0); + + myData->n = myData->nalloc; + for ( i = 0;i < NUM_DATA;i++ ) { + myData->data.F32[ i ] = LOWER + ( ( UPPER - LOWER ) / ( float ) NUM_DATA ) * ( float ) i; + } + + for (nb=0;nb<4;nb++) { + if (nb == 0) + numBins = 1; + if (nb == 1) + numBins = 2; + if (nb == 2) + numBins = 10; + if (nb == 3) + numBins = 20; + /*********************************************************************/ + /* Allocate and initialize data structures */ + /*********************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Allocate the psHistogram structure."); + myBounds = psVectorAlloc(numBins+1, PS_TYPE_F32); + myBounds->n = myBounds->nalloc; + for (i=0;idata.F32[i] = LOWER + ((UPPER - LOWER) / (float) numBins) * + (float) i; + } + myHist = psHistogramAllocGeneric(myBounds); + + if (myHist->nums->n != numBins) { + printf("ERROR: myHist->nums->n is wrong size (%ld)\n", myHist->nums->n); + testStatus = false; + } + + if (myHist->bounds->n != numBins+1) { + printf("ERROR: myHist->bounds->n is wrong size (%ld)\n", myHist->bounds->n); + testStatus = false; + } + + for (i=0;inums->data.F32[i] != 0.0) { + printf("ERROR: myHist->nums->data.F32[%d] not initialized to 0.\n", i); + testStatus = false; + } + myHist->nums->data.F32[i] = 0.0; + } + + if (myHist->minNum != 0) { + printf("ERROR: myHist->minNum is %d\n", myHist->minNum); + testStatus = false; + } + + if (myHist->maxNum != 0) { + printf("myHist->maxNum is %d\n", myHist->maxNum); + testStatus = false; + } + + if (myHist->uniform != false) { + printf("ERROR: myHist->uniform is %d\n", myHist->uniform); + testStatus = false; + } + + myHist = psVectorHistogram( myHist, myData, NULL, NULL, 0 ); + for (i=0;ibounds->data.F32[i], + myHist->bounds->data.F32[i+1], + myHist->nums->data.F32[i]); + } + + psMemCheckCorruption(1); + psFree(myHist); + psMemCheckCorruption(1); + psFree(myBounds); + + printFooter(stdout, + "psStats functions", + "Allocate the psHistogram structure.", + testStatus); + } + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Deallocate the psHistogram structure."); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,NULL,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + printFooter(stdout, + "psStats functions", + "Deallocate the psHistogram structure.", + testStatus); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psMathUtils.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMathUtils.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMathUtils.c (revision 12167) @@ -0,0 +1,214 @@ +/***************************************************************************** +This routine contains code which tests the general math utility functions. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define NUM_DATA 10 +#define VERBOSE 0 +#define TS00_X_F32 0x00000001 +#define TS00_X_F64 0x00000002 +#define TS00_X_NULL 0x00000004 +#define TS00_DOMAIN_F32 0x00000008 +#define TS00_DOMAIN_F64 0x00000010 +#define TS00_DOMAIN_NULL 0x00000020 +#define TS00_RANGE_F32 0x00000040 +#define TS00_RANGE_F64 0x00000080 +#define TS00_RANGE_NULL 0x00000200 + +psS32 genericInterpolateTest( + psU32 flags, + psS32 order, + psS32 numData, + psF64 xValue, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psS32 testStatus = true; + psS32 memLeaks = 0; + psScalar *x = NULL; + psVector *domain = NULL; + psVector *range = NULL; + psScalar *out = NULL; + + printPositiveTestHeader(stdout, "psMathUtils functions", "1D Interpolation routines"); + + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_X_NULL) { + printf(" using a NULL x scalar\n"); + } + + if (flags & TS00_X_F32) { + printf(" using a psF32 x scalar\n"); + x = psScalarAlloc((psF32) xValue, PS_TYPE_F32); + } + + if (flags & TS00_X_F64) { + printf(" using a psF64 x scalar\n"); + x = psScalarAlloc((psF64) xValue, PS_TYPE_F64); + } + + if (flags & TS00_DOMAIN_NULL) { + printf(" using a NULL domain vector\n"); + } + + if (flags & TS00_DOMAIN_F32) { + printf(" using a psF32 domain vector\n"); + domain = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = (psF32) i; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_DOMAIN_F64) { + printf(" using a psF64 domain vector\n"); + domain = psVectorAlloc(numData, PS_TYPE_F64); + for (psS64 i=0;idata.F64[i] = (psF64) i; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_RANGE_NULL) { + printf(" using a NULL range vector\n"); + } + + if (flags & TS00_RANGE_F32) { + printf(" using a psF32 range vector\n"); + range = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = (psF32) 2*i; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_RANGE_F64) { + printf(" using a psF64 range vector\n"); + range = psVectorAlloc(numData, PS_TYPE_F64); + for (psS64 i=0;idata.F64[i] = (psF64) 2*i; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + + out = p_psVectorInterpolate(NULL, domain, range, order, x); + + if (out == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the p_psVectorInterpolate function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the p_psVectorInterpolate function returned non-NULL.\n"); + testStatus = false; + } + + if (flags & TS00_X_F32) { + printf("The interpolated value was %.2f: should be %.2f\n", out->data.F32, 2.0 * x->data.F32); + } else if (flags & TS00_X_F64) { + printf("The interpolated value was %.2f: should be %.2f\n", out->data.F64, 2.0 * x->data.F64); + } + + /* + if (0) { + if (flags & TS00_F_F32) { + expectData = f->data.F32[i]; + } else if (flags & TS00_F_F64) { + expectData = (psF32) f->data.F64[i]; + } else if (flags & TS00_F_S32) { + expectData = (psF32) f->data.S32[i]; + } + + if (flags & TS00_X_F32) { + xData = x->data.F32[i]; + } else if (flags & TS00_X_F64) { + xData = (psF32) x->data.F64[i]; + } else if (flags & TS00_X_S32) { + xData = (psF32) x->data.S32[i]; + } else if (flags & TS00_X_NULL) { + if (flags & TS00_POLY_ORD) { + xData = (psF32) i; + } else if (flags & TS00_POLY_CHEB) { + xData = ((2.0 / ((psF32) (numData - 1))) * ((psF32) i)) - 1.0; + } + } + + psF32 actualData = psPolynomial1DEval(myPoly, xData); + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: (%.1f %.1f), expected was (%.1f)\n", + i, xData, actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f %.1f), expected was (%.1f)\n", + i, xData, actualData, expectData); + } + } + } + } + */ + } + + psMemCheckCorruption(1); + psFree(x); + psFree(out); + psFree(domain); + psFree(range); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, "psMinimize functions", "1D Interpolation routines", testStatus); + + return (testStatus); +} + +/***************************************************************************** +We test a variety of + *****************************************************************************/ +psS32 main() +{ + psBool testStatus = true; + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + printPositiveTestHeader(stdout, "psMathUtils functions: 1D Interpolation routines", ""); + + // + // F32 tests: + // + // All Vectors non-NULL + + testStatus &= genericInterpolateTest(TS00_X_F32 | TS00_DOMAIN_F32 | TS00_RANGE_F32, 5, NUM_DATA, 5.5, true); + + printFooter(stdout, "psMinimize functions: 1D Polynomial Fitting Functions", "", testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix01.c (revision 12167) @@ -0,0 +1,132 @@ +/** @file tst_psMatrix_01.c +* +* @brief Test driver for psMatrix transpose function +* +* This test driver contains the following tests for psMatrix test point 1: +* A) Create input and output images +* B) Transpose input image into output image +* C) Transpose input image into auto allocated NULL output image +* D) Free images and check for leaks +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-08-24 01:24:24 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], truthMatrix[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, \ + IMAGE->data.F32[i][j], truthMatrix[i][j]); \ + } \ + } \ + } \ +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psImage * tempImage = NULL; + + double truthMatrix[3][3] = {{1, 4, 7}, + {2, 5, 8}, + {3, 6, 9}}; + + // Test A - Create input and output images + printPositiveTestHeader(stdout, "psMatrix", "Create input and output images"); + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 1; + inImage->data.F64[0][1] = 2; + inImage->data.F64[0][2] = 3; + inImage->data.F64[1][0] = 4; + inImage->data.F64[1][1] = 5; + inImage->data.F64[1][2] = 6; + inImage->data.F64[2][0] = 7; + inImage->data.F64[2][1] = 8; + inImage->data.F64[2][2] = 9; + psImage *inImageF32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + psImage *outImageF32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImageF32->data.F32[0][0] = 1; + inImageF32->data.F32[0][1] = 2; + inImageF32->data.F32[0][2] = 3; + inImageF32->data.F32[1][0] = 4; + inImageF32->data.F32[1][1] = 5; + inImageF32->data.F32[1][2] = 6; + inImageF32->data.F32[2][0] = 7; + inImageF32->data.F32[2][1] = 8; + inImageF32->data.F32[2][2] = 9; + printFooter(stdout, "psMatrix", "Create input and output images", true); + + + // Test B - Transpose input image into output image + printPositiveTestHeader(stdout, "psMatrix", "Transpose input image into output image"); + tempImage = outImage; + outImage = psMatrixTranspose(outImage, inImage); + CHECK_MATRIX(outImage); + if (outImage->type.dimen != PS_DIMEN_IMAGE) { + printf( "Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if (outImage != tempImage) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + + tempImage = outImageF32; + outImageF32 = psMatrixTranspose(outImageF32, inImageF32); + CHECK_MATRIX(outImageF32); + if (outImageF32->type.dimen != PS_DIMEN_IMAGE) { + printf("Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if (outImageF32 != tempImage) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + printFooter(stdout, "psMatrix", "Transpose input image into output image", true); + + + // Test C - Transpose input image into auto allocated NULL output image + printPositiveTestHeader(stdout, "psMatrix", "Transpose input image into auto allocated NULL output image"); + psImage *outImageNull = NULL; + outImageNull = psMatrixTranspose(outImageNull, inImage); + CHECK_MATRIX(outImageNull); + + psImage *outImageNullF32 = NULL; + outImageNullF32 = psMatrixTranspose(outImageNullF32, inImageF32); + CHECK_MATRIX(outImageNullF32); + printFooter(stdout, "psMatrix", "Transpose input image into auto allocated NULL output image", true); + + + // Test D - Free images and check for leaks + printPositiveTestHeader(stdout, "psMatrix", "Free images and check for leaks"); + psFree(inImage); + psFree(outImage); + psFree(outImageNull); + psFree(inImageF32); + psFree(outImageF32); + psFree(outImageNullF32); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + if (nLeaks != 0) { + printf("ERROR: Found %d memory leaks\n", nLeaks); + } + psS32 nBad = psMemCheckCorruption(0); + if (nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMatrix" , "Free images and check for leaks", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix02.c (revision 12167) @@ -0,0 +1,101 @@ +/** @file tst_psMatrix_02.c + * + * @brief Test driver for negative tests for psMatrix transpose function + * + * This test driver contains the following tests for psMatrix test point 2: + * A) Input pointer same as output pointer + * B) Null input psImage + * C) Incorrect type for input pointer + * D) Incorrect type for output pointer + * E) Matrix not square for output pointer + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +psS32 main(psS32 argc, + char* argv[]) +{ + psLogSetFormat("HLNM"); + psImage *nullImage = NULL; + psImage *inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psImage *badImage1 = (psImage*)psImageAlloc(3, 3, PS_TYPE_C32); + psImage *badImage2 = (psImage*)psImageAlloc(3, 2, PS_TYPE_F64); + + // Test A - Input pointer same as output pointer + printPositiveTestHeader(stdout,"psMatrix", "Input pointer same as output pointer"); + psMemIncrRefCounter(inImage); + if (psMatrixTranspose(inImage, inImage) != NULL) { + psError(PS_ERR_UNKNOWN, true, + "inImage = outImage didn't results in NULL return"); + return 1; + } + if (psMemGetRefCounter(inImage) != 1) { + psError(PS_ERR_UNKNOWN, true, + "the output image was not freed on an error."); + return 2; + } + printFooter(stdout, "psMatrix", "Input pointer same as output pointer", true); + + // Test B - Null input psImage + printPositiveTestHeader(stdout,"psMatrix", "Null input psImage"); + psMemIncrRefCounter(outImage); + if (psMatrixTranspose(outImage, nullImage) != NULL) { + psError(PS_ERR_UNKNOWN, true, + "inImage = outImage didn't results in NULL return"); + return 3; + } + if (psMemGetRefCounter(outImage) != 1) { + psError(PS_ERR_UNKNOWN, true, + "the output image was not freed on an error."); + return 4; + } + printFooter(stdout, "psMatrix", "Null input psImage", true); + + // Test C - Incorrect type for input pointer + printPositiveTestHeader(stdout,"psMatrix", "Incorrect type for input pointer"); + psMemIncrRefCounter(outImage); + if (psMatrixTranspose(outImage, badImage1) != NULL) { + psError(PS_ERR_UNKNOWN, true, + "inImage = outImage didn't results in NULL return"); + return 5; + } + if (psMemGetRefCounter(outImage) != 1) { + psError(PS_ERR_UNKNOWN, true, + "the output image was not freed on an error."); + return 6; + } + printFooter(stdout, "psMatrix", "Incorrect type for input pointer", true); + + // Test D - Incorrect type for output pointer + printPositiveTestHeader(stdout,"psMatrix", "Incorrect type for output pointer"); + badImage1 = psMatrixTranspose(badImage1, inImage); + if (badImage1 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "inImage = outImage didn't results in NULL return"); + return 7; + } + // check that the type was changed. + if (badImage1->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN, true, + "the output image was not freed on an error."); + return 8; + } + printFooter(stdout, "psMatrix", "Incorrect type for output pointer", true); + + // Test E - Matrix not square for output pointer + printPositiveTestHeader(stdout,"psMatrix", "Matrix not square for output pointer"); + psMatrixTranspose(badImage2, inImage); + printFooter(stdout, "psMatrix", "Matrix not square for output pointer", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix03.c (revision 12167) @@ -0,0 +1,235 @@ +/** @file tst_psMatrix_03.c + * + * @brief Test driver for psMatrix LU functions + * + * This test driver contains the following tests for psMatrix test point 3: + * A) Create input and output images and vectors + * B) Calculate LU matrix + * C) Determine solution to matrix equation + * D) Free input and output images and vectors + * E) Attempt to use null image input argument + * F) Attempt to use null input vector argument + * G) ttempt to use null LU image argument + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], truthMatrix[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, \ + IMAGE->data.F32[i][j], truthMatrix[i][j]); \ + } \ + } \ + } \ +} + +#define CHECK_VECTOR(VECTOR) \ +for(psU32 i=0; in; i++) { \ + if(VECTOR->type.type == PS_TYPE_F64) { \ + if(fabs(VECTOR->data.F64[i]-truthVector[i]) > TOLERANCE) { \ + printf("Vector values at element %d don't agree %lf vs %lf\n", i, \ + VECTOR->data.F64[i], truthVector[i]); \ + } \ + } else if(VECTOR->type.type == PS_TYPE_F32){ \ + if(fabs(VECTOR->data.F32[i]-truthVector[i]) > TOLERANCE) { \ + printf("Vector values at element %d don't agree %f vs %lf\n", i, \ + VECTOR->data.F32[i], truthVector[i]); \ + } \ + } \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psImage *luImage = NULL; + psImage *inImage = NULL; + psImage *tempImage = NULL; + psVector *tempVector = NULL; + psVector *perm = NULL; + psVector *outVector = NULL; + psVector *inVector = NULL; + psImage *luImage32 = NULL; + psImage *inImage32 = NULL; + psImage *tempImage32 = NULL; + psVector *tempVector32 = NULL; + psVector *perm32 = NULL; + psVector *outVector32 = NULL; + psVector *inVector32 = NULL; + + double truthVector[3] = { + 4.000000, + -2.000000, + 3.000000 + }; + + double truthMatrix[3][3] = {{4.000000, 5.000000, 6.000000}, + {0.750000, -2.750000, -6.500000}, + {0.500000, -0.545455, -0.545455}}; + + + // Test A - Create input and output images and vectors + printPositiveTestHeader(stdout, "psMatrix", "Create input and output images and vectors"); + luImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + perm = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + outVector = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + inVector = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 2; + inImage->data.F64[0][1] = 4; + inImage->data.F64[0][2] = 6; + inImage->data.F64[1][0] = 4; + inImage->data.F64[1][1] = 5; + inImage->data.F64[1][2] = 6; + inImage->data.F64[2][0] = 3; + inImage->data.F64[2][1] = 1; + inImage->data.F64[2][2] = -2; + inVector->data.F64[0] = 18.0; + inVector->data.F64[1] = 24.0; + inVector->data.F64[2] = 4.0; + inVector->n = 3; + luImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + outVector32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + inVector32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + inImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImage32->data.F32[0][0] = 2; + inImage32->data.F32[0][1] = 4; + inImage32->data.F32[0][2] = 6; + inImage32->data.F32[1][0] = 4; + inImage32->data.F32[1][1] = 5; + inImage32->data.F32[1][2] = 6; + inImage32->data.F32[2][0] = 3; + inImage32->data.F32[2][1] = 1; + inImage32->data.F32[2][2] = -2; + inVector32->data.F32[0] = 18.0; + inVector32->data.F32[1] = 24.0; + inVector32->data.F32[2] = 4.0; + inVector32->n = 3; + printFooter(stdout, "psMatrix", "Create input and output images and vectors", true); + + + // Test B - Calculate LU matrix + printPositiveTestHeader(stdout, "psMatrix", "Calculate LU matrix"); + tempImage = luImage; + luImage = psMatrixLUD(luImage, &perm, inImage); + CHECK_MATRIX(luImage); + if(luImage->type.dimen != PS_DIMEN_IMAGE) { + printf("Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if(luImage != tempImage) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + + tempImage32 = luImage32; + luImage32 = psMatrixLUD(luImage32, &perm32, inImage32); + CHECK_MATRIX(luImage32); + if(luImage32->type.dimen != PS_DIMEN_IMAGE) { + printf("Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if(luImage32 != tempImage32) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + printFooter(stdout, "psMatrix", "Calculate LU matrix", true); + + // Test C - Determine solution to matrix equation + printPositiveTestHeader(stdout, "psMatrix", "Determine solution to matrix equation"); + tempVector = outVector; + outVector = psMatrixLUSolve(outVector, luImage, inVector, perm); + CHECK_VECTOR(outVector); + if(outVector->type.dimen != PS_DIMEN_VECTOR) { + printf("Error: Resulting image is not PS_DIMEN_VECTOR\n"); + } else if(outVector != tempVector) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + + tempVector32 = outVector32; + outVector32 = psMatrixLUSolve(outVector32, luImage32, inVector32, perm32); + CHECK_VECTOR(outVector32); + if(outVector32->type.dimen != PS_DIMEN_VECTOR) { + printf("Error: Resulting image is not PS_DIMEN_VECTOR\n"); + } else if(outVector32 != tempVector32) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + printFooter(stdout, "psMatrix", "Determine solution to matrix equation", true); + + + // Test D - Free input and output images and vectors + printPositiveTestHeader(stdout, "psMatrix", "Free input and output images and vectors"); + psFree(inImage); + psFree(luImage); + psFree(perm); + psFree(outVector); + psFree(inVector); + psFree(inImage32); + psFree(luImage32); + psFree(perm32); + psFree(outVector32); + psFree(inVector32); + if( psMemCheckLeaks(0, NULL, stdout, false) ) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected"); + return 10; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMatrix" ,"Free input and output images and vectors", true); + + + // Test E - Attempt to use null image input argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null image input argument", + "Invalid operation: inImage or its data is NULL.", 0); + psImage *imageTest = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixLUD(imageTest, NULL, NULL); + printFooter(stdout, "psMatrix", "Attempt to use null image input argument", true); + + + // Test F - Attempt to use null input vector argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null input vector argument", + "Invalid operation: inVector or its data is NULL.", 0); + psVector *vectorBad = NULL; + psVector *vectorBadOut = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psVector *permBad = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + imageTest = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixLUSolve(vectorBadOut, imageTest, vectorBad, permBad); + printFooter(stdout, "psMatrix", "Attempt to use null input vector argument", true); + + + // Test G - Attempt to use null LU image argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null LU image argument", + "Invalid operation: inImage or its data is NULL.", 0); + vectorBadOut = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + psMatrixLUSolve(vectorBadOut, NULL, vectorBad, permBad); + printFooter(stdout, "psMatrix", "Attempt to use null LU image argument", true); + + psFree(permBad); + psFree(imageTest); + + if( psMemCheckLeaks(0, NULL, stdout, false) ) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected"); + return 10; + } + nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix04.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix04.c (revision 12167) @@ -0,0 +1,162 @@ +/** @file tst_psMatrix_04.c + * + * @brief Test driver for psMatrix invert function + * + * This test driver contains the following tests for psMatrix test point 4: + * A) Create input and output images + * B) Invert matrix and calculate determinant + * C) Calculate determinant only + * D) Free input and output images + * E) Attempt to use null input image argument + * F) Attempt to use null input float argument + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], truthMatrix[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, \ + IMAGE->data.F32[i][j], truthMatrix[i][j]); \ + } \ + } \ + } \ +} + +#define CHECK_VALUE(VALUE) \ +if(fabs(VALUE-truthValue) > TOLERANCE) { \ + printf("Values don't agree %lf vs %lf\n", VALUE, truthValue); \ +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + float det = 0.0f; + float det2 = 0; + psImage *outImage = NULL; + psImage *inImage = NULL; + psImage *tempImage = NULL; + psImage *outImage32 = NULL; + psImage *inImage32 = NULL; + psImage *tempImage32 = NULL; + + double truthMatrix[3][3] = {{4.0000000, -4.333333, -2.333333}, + {-1.000000, 1.666667, 0.666667}, + {-1.000000, 0.666667, 0.666667}}; + double truthValue = 3.0; + + + // Test A - Create input and output images + printPositiveTestHeader(stdout, "psMatrix", "Create input and output images"); + outImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + inImage->data.F64[0][0] = 2; + inImage->data.F64[0][1] = 4; + inImage->data.F64[0][2] = 3; + inImage->data.F64[1][0] = 0; + inImage->data.F64[1][1] = 1; + inImage->data.F64[1][2] = -1; + inImage->data.F64[2][0] = 3; + inImage->data.F64[2][1] = 5; + inImage->data.F64[2][2] = 7; + + outImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImage32 = (psImage*)psImageAlloc(3, 3, PS_TYPE_F32); + inImage32->data.F32[0][0] = 2; + inImage32->data.F32[0][1] = 4; + inImage32->data.F32[0][2] = 3; + inImage32->data.F32[1][0] = 0; + inImage32->data.F32[1][1] = 1; + inImage32->data.F32[1][2] = -1; + inImage32->data.F32[2][0] = 3; + inImage32->data.F32[2][1] = 5; + inImage32->data.F32[2][2] = 7; + printFooter(stdout, "psMatrix", "Create input and output images", true); + + + // Test B - Invert matrix and calculate determinant + printPositiveTestHeader(stdout, "psMatrix", "Invert matrix and calculate determinant"); + tempImage = outImage; + outImage = psMatrixInvert(outImage, inImage, &det); + CHECK_MATRIX(outImage); + CHECK_VALUE(det); + if(outImage->type.dimen != PS_DIMEN_IMAGE) { + printf("Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if(outImage != tempImage) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + det = 0.0f; + tempImage32 = outImage32; + outImage32 = psMatrixInvert(outImage32, inImage32, &det); + CHECK_MATRIX(outImage32); + CHECK_VALUE(det); + if(outImage32->type.dimen != PS_DIMEN_IMAGE) { + printf("Error: Resulting image is not PS_DIMEN_IMAGE\n"); + } else if(outImage32 != tempImage32) { + printf("Error: Return pointer not equal to output argument pointer\n"); + } + printFooter(stdout, "psMatrix", "Invert matrix and calculate determinant", true); + + + // Test C - Calculate determinant only + printPositiveTestHeader(stdout, "psMatrix", "Calculate determinant only"); + det2 = psMatrixDeterminant(inImage); + CHECK_VALUE(det2); + det2 = psMatrixDeterminant(inImage32); + CHECK_VALUE(det2); + printFooter(stdout, "psMatrix", "Calculate determinant only", true); + + + // Test D - Free input and output images + printPositiveTestHeader(stdout, "psMatrix", "Free input and output images"); + psFree(outImage); + psFree(inImage); + psFree(outImage32); + psFree(inImage32); + if(psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); + return 10; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMatrix" ,"Free input and output images", true); + + + // Test E - Attempt to use null input image argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null input image argument", + "Invalid operation: inImage or its data is NULL.", 0); + psImage *badOutImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixInvert(badOutImage, NULL, &det); + printFooter(stdout, "psMatrix", "Attempt to use null input image argument", true); + + + // Test F - Attempt to use null input float argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null input float argument", + "Invalid operation: determinant argument is NULL.", 0); + psImage *badInImage = (psImage*)psImageAlloc(3, 3, PS_TYPE_F64); + psMatrixInvert(badOutImage, badInImage, NULL); + printFooter(stdout, "psMatrix", "Attempt to use null input float argument", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix05.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix05.c (revision 12167) @@ -0,0 +1,119 @@ +/** @file tst_psMatrix_05.c +* +* @brief Test driver for psMatrix multiplication function +* +* This test driver contains the following tests for psMatrix test point 5: +* A) Create input and output images +* B) Multiply images +* C) Free input and output images +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-08-24 01:24:24 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], truthMatrix[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, \ + IMAGE->data.F32[i][j], truthMatrix[i][j]); \ + } \ + } \ + } \ +} + + +psS32 main( psS32 argc, + char* argv[] ) +{ + psLogSetFormat("HLNM"); + psImage * outImage = NULL; + psImage *inImage1 = NULL; + psImage *inImage2 = NULL; + psImage * outImage32 = NULL; + psImage *inImage132 = NULL; + psImage *inImage232 = NULL; + + double truthMatrix[3][3] = {{ 0.0, 52.0}, + {-14.0, 51.0}}; + + // Test A - Create input and output images + printPositiveTestHeader(stdout, "psMatrix", "Create input and output images"); + outImage = (psImage*) psImageAlloc(2, 2, PS_TYPE_F64); + inImage1 = (psImage*) psImageAlloc(3, 2, PS_TYPE_F64); + inImage2 = (psImage*) psImageAlloc(2, 3, PS_TYPE_F64); + inImage1->data.F64[0][0] = 2; + inImage1->data.F64[0][1] = 3; + inImage1->data.F64[0][2] = 4; + inImage1->data.F64[1][0] = -1; + inImage1->data.F64[1][1] = 2; + inImage1->data.F64[1][2] = 5; + inImage2->data.F64[0][0] = 4; + inImage2->data.F64[0][1] = 1; + inImage2->data.F64[1][0] = 0; + inImage2->data.F64[1][1] = 6; + inImage2->data.F64[2][0] = -2; + inImage2->data.F64[2][1] = 8; + outImage32 = (psImage*)psImageAlloc(2, 2, PS_TYPE_F32); + inImage132 = (psImage*)psImageAlloc(3, 2, PS_TYPE_F32); + inImage232 = (psImage*)psImageAlloc(2, 3, PS_TYPE_F32); + inImage132->data.F32[0][0] = 2; + inImage132->data.F32[0][1] = 3; + inImage132->data.F32[0][2] = 4; + inImage132->data.F32[1][0] = -1; + inImage132->data.F32[1][1] = 2; + inImage132->data.F32[1][2] = 5; + inImage232->data.F32[0][0] = 4; + inImage232->data.F32[0][1] = 1; + inImage232->data.F32[1][0] = 0; + inImage232->data.F32[1][1] = 6; + inImage232->data.F32[2][0] = -2; + inImage232->data.F32[2][1] = 8; + printFooter( stdout, "psMatrix", "Create input and output images", true ); + + + // Test B - Multiply images + printPositiveTestHeader(stdout, "psMatrix", "Multiply images"); + psMatrixMultiply(outImage, inImage1, inImage2); + CHECK_MATRIX(outImage); + psMatrixMultiply(outImage32, inImage132, inImage232); + CHECK_MATRIX(outImage32); + printFooter(stdout, "psMatrix", "Multiply images", true); + + + // Test C - Free input and output images + printPositiveTestHeader( stdout, "psMatrix", "Free input and output images" ); + psFree(outImage); + psFree(inImage1); + psFree(inImage2); + psFree(outImage32); + psFree(inImage132); + psFree(inImage232); + psS32 nLeaks = psMemCheckLeaks( 0, NULL, stdout, false ); + if ( nLeaks != 0 ) { + printf( "ERROR: Found %d memory leaks\n", nLeaks ); + } + psS32 nBad = psMemCheckCorruption( 0 ); + if ( nBad ) { + printf( "ERROR: Found %d bad memory blocks\n", nBad ); + } + printFooter( stdout, "psMatrix" , "Free input and output images", true ); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix06.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix06.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix06.c (revision 12167) @@ -0,0 +1,125 @@ +/** @file tst_psMatrix_06.c +* +* @brief Test driver for psMatrix Eigenvectors function +* +* This test driver contains the following tests for psMatrix test point 6: +* A) Create input and output images +* B) Calculate Eigenvectors +* C) Free input and output images +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-08-24 01:24:24 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], truthMatrix[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-truthMatrix[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %lf\n", i, j, \ + IMAGE->data.F32[i][j], truthMatrix[i][j]); \ + } \ + } \ + } \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psImage * outImage = NULL; + psImage *inImage = NULL; + psImage * outImage32 = NULL; + psImage *inImage32 = NULL; + + double truthMatrix[4][4] = {{0.792608, 0.582076, -0.179186, -0.029193}, + {0.451923, -0.370502, 0.741918, 0.328712}, + {0.322416, -0.509579, -0.100228, -0.791411}, + {0.252161, -0.514048, -0.638283, 0.514553}}; + + + // Test A - Create input and output images + printPositiveTestHeader( stdout, "psMatrix", "Create input and output images" ); + outImage = (psImage*) psImageAlloc(4, 4, PS_TYPE_F64); + inImage = (psImage*) psImageAlloc(4, 4, PS_TYPE_F64); + + inImage->data.F64[0][0] = 1./1.; + inImage->data.F64[0][1] = 1./2.; + inImage->data.F64[0][2] = 1./3.; + inImage->data.F64[0][3] = 1./4.; + inImage->data.F64[1][0] = 1./2.; + inImage->data.F64[1][1] = 1./3.; + inImage->data.F64[1][2] = 1./4.; + inImage->data.F64[1][3] = 1./5.; + inImage->data.F64[2][0] = 1./3.; + inImage->data.F64[2][1] = 1./4.; + inImage->data.F64[2][2] = 1./5.; + inImage->data.F64[2][3] = 1./6.; + inImage->data.F64[3][0] = 1./4.; + inImage->data.F64[3][1] = 1./5.; + inImage->data.F64[3][2] = 1./6.; + inImage->data.F64[3][3] = 1./7.; + + outImage32 = (psImage*) psImageAlloc(4, 4, PS_TYPE_F32); + inImage32 = (psImage*) psImageAlloc(4, 4, PS_TYPE_F32); + inImage32->data.F32[0][0] = 1./1.; + inImage32->data.F32[0][1] = 1./2.; + inImage32->data.F32[0][2] = 1./3.; + inImage32->data.F32[0][3] = 1./4.; + inImage32->data.F32[1][0] = 1./2.; + inImage32->data.F32[1][1] = 1./3.; + inImage32->data.F32[1][2] = 1./4.; + inImage32->data.F32[1][3] = 1./5.; + inImage32->data.F32[2][0] = 1./3.; + inImage32->data.F32[2][1] = 1./4.; + inImage32->data.F32[2][2] = 1./5.; + inImage32->data.F32[2][3] = 1./6.; + inImage32->data.F32[3][0] = 1./4.; + inImage32->data.F32[3][1] = 1./5.; + inImage32->data.F32[3][2] = 1./6.; + inImage32->data.F32[3][3] = 1./7.; + printFooter(stdout, "psMatrix", "Create input and output images", true); + + + // Test B - Calculate Eigenvectors + printPositiveTestHeader(stdout, "psMatrix", "Calculate Eigenvectors"); + psMatrixEigenvectors(outImage, inImage); + CHECK_MATRIX(outImage); + psMatrixEigenvectors(outImage32, inImage32); + CHECK_MATRIX(outImage32); + printFooter(stdout, "psMatrix", "Calculate Eigenvectors", true); + + + // Test C - Free input and output images + printPositiveTestHeader(stdout, "psMatrix", "Free input and output images"); + psFree(outImage); + psFree(inImage); + psFree(outImage32); + psFree(inImage32); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + if (nLeaks != 0) { + printf("ERROR: Found %d memory leaks\n", nLeaks); + } + psS32 nBad = psMemCheckCorruption(0); + if (nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMatrix" , "Free input and output images", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrix07.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrix07.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrix07.c (revision 12167) @@ -0,0 +1,314 @@ +/** @file tst_psMatrix_07.c + * + * @brief Test driver for psMatrix vector conversion functions + * + * This test driver contains the following tests for psMatrix test point 7: + * A) Create input and output images and vectors + * B) Convert matrix to PS_DIMEN_VECTOR vector + * C) Attempt to use null image input argument + * D) Convert matrix to PS_DIMEN_TRANSV vector + * E) Improper image size + * F) Convert PS_DIMEN_VECTOR vector to matrix + * G) Attempt to use null input vector argument + * H) Convert PS_DIMEN_TRANSV vector to matrix + * I) Free input and output images and vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + + +#define TOLERANCE 0.000001 + +#define CHECK_MATRIX(IMAGE,TRUTH) \ +for(psU32 i=0; inumRows; i++) { \ + for(psU32 j=0; jnumCols; j++) { \ + if(IMAGE->type.type == PS_TYPE_F64) { \ + if(fabs(IMAGE->data.F64[i][j]-TRUTH[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %lf vs %lf\n", i, j, \ + IMAGE->data.F64[i][j], TRUTH[i][j]); \ + } \ + } else if(IMAGE->type.type == PS_TYPE_F32){ \ + if(fabs(IMAGE->data.F32[i][j]-TRUTH[i][j]) > TOLERANCE) { \ + printf("Matrix values at element %d, %d don't agree %f vs %f\n", i, j, \ + IMAGE->data.F32[i][j], TRUTH[i][j]); \ + } \ + } \ + } \ +} + +#define CHECK_VECTOR(VECTOR) \ +for(psU32 i=0; in; i++) { \ + if(VECTOR->type.type == PS_TYPE_F64) { \ + if(fabs(VECTOR->data.F64[i]-truthVector[i]) > TOLERANCE) { \ + printf("Vector values at element %d don't agree %lf vs %lf\n", i, \ + VECTOR->data.F64[i], truthVector[i]); \ + } \ + } else if(VECTOR->type.type == PS_TYPE_F32){ \ + if(fabs(VECTOR->data.F32[i]-truthVector_32[i]) > TOLERANCE) { \ + printf("Vector values at element %d don't agree %f vs %lf\n", i, \ + VECTOR->data.F32[i], truthVector[i]); \ + } \ + } \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psVector *v1 = NULL; + psVector *v1_32 = NULL; + psVector *tempVector = NULL; + psVector *tempVector_32 = NULL; + psImage *tempImage = NULL; + psImage *tempImage_32 = NULL; + psImage *m1 = NULL; + psImage *m1_32 = NULL; + psVector *v2 = NULL; + psVector *v2_32 = NULL; + psVector *v3 = NULL; + psVector *v3_32 = NULL; + psImage *m2 = NULL; + psImage *m2_32 = NULL; + psImage *m3 = NULL; + psImage *m3_32 = NULL; + psImage *m4 = NULL; + psImage *m4_32 = NULL; + psImage *badImage = NULL; + psImage *badImage_32 = NULL; + + psF64 truthVector[3] = {0.0, 1.0, 2.0}; + psF32 truthVector_32[3] = {0.0, 1.0, 2.0}; + psF64 truthMatrix[3][1] = {{0.0}, {1.0}, {2.0}}; + psF32 truthMatrix_32[3][1] = {{0.0}, {1.0}, {2.0}}; + + // Test A - Create input and output images + printPositiveTestHeader(stdout, "psMatrix", "Create input and output images and vectors"); + v1 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + v1_32 = (psVector*)psVectorAlloc(3, PS_TYPE_F32); + m1 = (psImage*)psImageAlloc(1, 3, PS_TYPE_F64); + m1_32 = (psImage*)psImageAlloc(1,3,PS_TYPE_F32); + v2 = (psVector*)psVectorAlloc(3, PS_TYPE_F64); + v2_32 = (psVector*)psVectorAlloc(3,PS_TYPE_F32); + m2 = (psImage*)psImageAlloc(1, 3, PS_TYPE_F64); + m2_32 = (psImage*)psImageAlloc(1,3,PS_TYPE_F32); + m3 = (psImage*)psImageAlloc(3, 1, PS_TYPE_F64); + m3_32 = (psImage*)psImageAlloc(3,1,PS_TYPE_F32); + m4 = (psImage*)psImageAlloc(3, 1, PS_TYPE_F64); + m4_32 = (psImage*)psImageAlloc(3,1,PS_TYPE_F32); + badImage = (psImage*)psImageAlloc(2, 2, PS_TYPE_F64); + badImage_32 = (psImage*)psImageAlloc(2,2,PS_TYPE_F32); + m1->data.F64[0][0] = 0.0; + m1->data.F64[1][0] = 1.0; + m1->data.F64[2][0] = 2.0; + m1_32->data.F32[0][0] = 0.0; + m1_32->data.F32[1][0] = 1.0; + m1_32->data.F32[2][0] = 2.0; + v2->data.F64[0] = 0.0; + v2->data.F64[1] = 1.0; + v2->data.F64[2] = 2.0; + v2->n = 3; + v2_32->data.F32[0] = 0.0; + v2_32->data.F32[1] = 1.0; + v2_32->data.F32[2] = 2.0; + v2_32->n = 3; + m4->data.F64[0][0] = 0.0; + m4->data.F64[0][1] = 1.0; + m4->data.F64[0][2] = 2.0; + m4_32->data.F32[0][0] = 0.0; + m4_32->data.F32[0][1] = 1.0; + m4_32->data.F32[0][2] = 2.0; + printFooter(stdout, "psMatrix", "Create input and output images and vectors", true); + + // Test B - Convert matrix to PS_DIMEN_VECTOR vector + printPositiveTestHeader(stdout, "psMatrix", "Convert matrix to PS_DIMEN_VECTOR vector"); + tempVector = v1; + v1 = psMatrixToVector(v1, m1); + CHECK_VECTOR(v1); + if(v1->type.dimen != PS_DIMEN_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_VECTOR"); + return 1; + } else if(v1 != tempVector) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 2; + } + tempVector_32 = v1_32; + v1_32 = psMatrixToVector(v1_32, m1_32); + CHECK_VECTOR(v1_32); + if(v1_32->type.dimen != PS_DIMEN_VECTOR) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_VECTOR"); + return 1; + } else if(v1_32 != tempVector_32) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 2; + } + printFooter(stdout, "psMatrix", "Convert matrix to PS_DIMEN_VECTOR vector", true); + + + // Test C - Attempt to use null image input argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null image input argument", + "Invalid operation: inImage or its data is NULL.", 0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error."); + v1 = psMatrixToVector(v1, NULL); + if(v1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL input"); + return 3; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error."); + v1_32 = psMatrixToVector(v1_32, NULL); + if(v1_32 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL input"); + return 3; + } + printFooter(stdout, "psMatrix", "Attempt to use null image input argument", true); + + + // Test D - Convert matrix to PS_DIMEN_TRANSV vector + printPositiveTestHeader(stdout, "psMatrix", "Convert matrix to PS_DIMEN_TRANSV vector"); + v3 = psVectorAlloc(3, PS_TYPE_F64); + tempVector = v3; + v3->type.dimen = PS_DIMEN_TRANSV; + psMatrixToVector(v3, m4); + CHECK_VECTOR(v3); + if(v3->type.dimen != PS_DIMEN_TRANSV) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_TRANSV"); + return 4; + } else if(v3 != tempVector) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 5; + } + v3_32 = psVectorAlloc(3, PS_TYPE_F32); + tempVector_32 = v3_32; + v3_32->type.dimen = PS_DIMEN_TRANSV; + psMatrixToVector(v3_32, m4_32); + CHECK_VECTOR(v3_32); + if(v3_32->type.dimen != PS_DIMEN_TRANSV) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_TRANSV"); + return 6; + } else if(v3_32 != tempVector_32) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 7; + } + printFooter(stdout, "psMatrix", "Convert matrix to PS_DIMEN_TRANSV vector", true); + + + // Test E - Improper image size + printNegativeTestHeader(stdout,"psMatrix", "Improper image size", + "Image does not have dim with 1 col or 1 row: (2 x 2).", 0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if(psMatrixToVector(v1, badImage) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with improper sizes"); + return 8; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if(psMatrixToVector(v1_32, badImage_32) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with improper sizes"); + return 9; + } + printFooter(stdout, "psMatrix", "Improper image size", true); + + + // Test F - Convert PS_DIMEN_VECTOR vector to matrix + printPositiveTestHeader(stdout, "psMatrix", "Convert PS_DIMEN_VECTOR vector to matrix"); + tempImage = m2; + m2 = psVectorToMatrix(m2, v2); + CHECK_MATRIX(m2,truthMatrix); + if(m2->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_IMAGE"); + return 10; + } else if(m2 != tempImage) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 11; + } + tempImage_32 = m2_32; + m2_32 = psVectorToMatrix(m2_32, v2_32); + CHECK_MATRIX(m2_32,truthMatrix_32); + if(m2_32->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_IMAGE"); + return 10; + } else if(m2_32 != tempImage_32) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 11; + } + printFooter(stdout, "psMatrix", "Convert PS_DIMEN_VECTOR vector to matrix", true); + + + // Test G - Attempt to use null input vector argument + printNegativeTestHeader(stdout,"psMatrix", "Attempt to use null input vector argument", + "Invalid operation: inVector or its data is NULL.", 0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + if(psVectorToMatrix(m2, NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return output image"); + return 12; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + if(psVectorToMatrix(m2_32, NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return output image"); + return 13; + } + printFooter(stdout, "psMatrix", "Attempt to use null input vector argument", true); + + + // Test H - Convert PS_DIMEN_TRANSV vector to matrix + printPositiveTestHeader(stdout, "psMatrix", "Convert PS_DIMEN_TRANSV vector to matrix"); + v2->type.dimen = PS_DIMEN_TRANSV; + tempImage = m3; + psVectorToMatrix(m3, v2); + CHECK_MATRIX(m3, truthMatrix); + if(m3->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_IMAGE"); + return 14; + } else if(m3 != tempImage) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 15; + } + v2_32->type.dimen = PS_DIMEN_TRANSV; + tempImage_32 = m3_32; + psVectorToMatrix(m3_32, v2_32); + CHECK_MATRIX(m3_32, truthMatrix_32); + if(m3_32->type.dimen != PS_DIMEN_IMAGE) { + psError(PS_ERR_UNKNOWN,true,"Resulting image is not PS_DIMEN_IMAGE"); + return 16; + } else if(m3_32 != tempImage_32) { + psError(PS_ERR_UNKNOWN,true,"Return pointer not equal to output argument pointer"); + return 17; + } + printFooter(stdout, "psMatrix", "Convert PS_DIMEN_TRANSV vector to matrix", true); + + + // Test I - Free input and output images + printPositiveTestHeader(stdout, "psMatrix", "Free input and output images and vectors"); + psFree(m1); + psFree(v1); + psFree(v2); + psFree(v3); + psFree(m3); + psFree(m4); + psFree(m1_32); + psFree(v1_32); + psFree(v2_32); + psFree(v3_32); + psFree(m3_32); + psFree(m4_32); + psFree(badImage); + psFree(badImage_32); + if( psMemCheckLeaks(0, NULL, stdout, false) != 0) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); + return 10; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMatrix" ,"Free input and output images and vectors", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic01.c (revision 12167) @@ -0,0 +1,206 @@ +/** @file tst_psMatrixVectorArithmetic01.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver tests combinations of matrix, vector, and scalar binary operations including: + * Matrix-matrix with +,-,*,/ with S32, F32, F64, C32 + * Matrix-vector with +,-,*,/ with S32, F32, F64, C32 + * Matrix-scalar with +,-,*,/ with S32, F32, F64, C32 + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define PRINT_SCALAR(SCALAR,TYPE) \ +if(PS_IS_PSELEMTYPE_COMPLEX(SCALAR->type.type)) { \ + printf("%f+%fi ", creal(SCALAR->data.TYPE), cimag(SCALAR->data.TYPE)); \ +} else if(PS_IS_PSELEMTYPE_INT(SCALAR->type.type)) { \ + printf("%d ", (psS32)SCALAR->data.TYPE); \ +} else { \ + printf("%f ", (double)SCALAR->data.TYPE); \ +} \ +printf("\n\n"); + +#define PRINT_VECTOR(VECTOR,TYPE) \ +for(psS32 i=0; in; i++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(VECTOR->type.type)) { \ + printf("%f+%fi ", creal(VECTOR->data.TYPE[i]), cimag(VECTOR->data.TYPE[i])); \ + } else if(PS_IS_PSELEMTYPE_INT(VECTOR->type.type)) { \ + printf("%d ", (psS32)VECTOR->data.TYPE[i]); \ + } else { \ + printf("%f ", (double)VECTOR->data.TYPE[i]); \ + } \ +} \ +printf("\n\n"); + + +#define PRINT_MATRIX(IMAGE,TYPE) \ +for(psS32 i=IMAGE->numRows-1; i>-1; i--) { \ + for(psS32 j=0; jnumCols; j++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IMAGE->type.type)) { \ + printf("%f+%fi ", creal(IMAGE->data.TYPE[i][j]), cimag(IMAGE->data.TYPE[i][j])); \ + } else if(PS_IS_PSELEMTYPE_INT(IMAGE->type.type)) { \ + printf("%d ", (psS32)IMAGE->data.TYPE[i][j]); \ + } else { \ + printf("%f ", (double)IMAGE->data.TYPE[i][j]); \ + } \ + } \ + printf("\n"); \ +} \ +printf("\n"); + + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +#define CHECK_MEMORY \ +if(psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { \ + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); \ + return 10; \ +} \ +psS32 nBad = psMemCheckCorruption(0); \ +if(nBad) { \ + printf("ERROR: Found %d bad memory blocks\n", nBad); \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + + // Test matrix-matrix binary operations + #define testBinaryOpMM(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS) \ + { \ + printPositiveTestHeader(stdout, "psMatrixVectorArithmetic", "Test matrix-matrix psBinaryOp"); \ + printf("Operation: %s\n", #OP); \ + CREATE_AND_SET_IMAGE(inImage,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_IMAGE(outImage,TYPE,VALUE2,NROWS,NCOLS); \ + printf("Input:\n"); \ + PRINT_MATRIX(inImage,TYPE); \ + PRINT_MATRIX(outImage,TYPE); \ + outImage = (psImage*)psBinaryOp(outImage, inImage, #OP, outImage); \ + printf("Output:\n"); \ + PRINT_MATRIX(outImage,TYPE); \ + psFree(inImage); \ + psFree(outImage); \ + CHECK_MEMORY; \ + printFooter(stdout, "psMatrixVectorArithmetic", "Test matrix-matrix psBinaryOp", true); \ + } + + testBinaryOpMM(+,S32,10,10,3,2); + testBinaryOpMM(+,F32,10.0,10.0,3,2); + testBinaryOpMM(+,F64,10.0,10.0,3,2); + testBinaryOpMM(+,C32,10.0+10.0i,10.0+10.0i,3,2); + testBinaryOpMM(-,S32,20,10,3,2); + testBinaryOpMM(-,F32,20.0,10.0,3,2); + testBinaryOpMM(-,F64,20.0,10.0,3,2); + testBinaryOpMM(*,C32,20.0+20.0i,10.0+10.0i,3,2); + testBinaryOpMM(*,S32,20,10,3,2); + testBinaryOpMM(*,F32,20.0,10.0,3,2); + testBinaryOpMM(*,F64,20.0,10.0,3,2); + testBinaryOpMM(*,C32,20.0+20.0i,10.0+10.0i,3,2); + testBinaryOpMM(/,C32,20.0+20.0i,10.0+10.0i,3,2); + testBinaryOpMM(/,S32,20,10,3,2); + testBinaryOpMM(/,F32,20.0,10.0,3,2); + testBinaryOpMM(/,F64,20.0,10.0,3,2); + testBinaryOpMM(/,C32,20.0+20.0i,10.0+10.0i,3,2); + + // Test Matrix-Vector binary operations + #define testBinaryOpMV(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS) \ + { \ + printPositiveTestHeader(stdout, "psMatrixVectorArithmetic", "Test matrix-vector psBinaryOp"); \ + printf("Operation: %s\n", #OP); \ + CREATE_AND_SET_IMAGE(outImage,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_VECTOR(inVector,TYPE,VALUE2,NROWS); \ + printf("Input:\n"); \ + PRINT_MATRIX(outImage,TYPE); \ + PRINT_VECTOR(inVector,TYPE); \ + outImage = (psImage*)psBinaryOp(outImage, outImage, #OP, inVector); \ + printf("Output:\n"); \ + PRINT_MATRIX(outImage,TYPE); \ + psFree(inVector); \ + psFree(outImage); \ + CHECK_MEMORY; \ + printFooter(stdout, "psMatrixVectorArithmetic", "Test matrix-vector psBinaryOp", true); \ + } + + testBinaryOpMV(+,S32,10,5,3,2); + testBinaryOpMV(+,F32,10.0,5.0,3,2); + testBinaryOpMV(+,F64,10.0,5.0,3,2); + testBinaryOpMV(+,C32,10.0+10.0i,5.0+5.0i,3,2); + testBinaryOpMV(-,S32,20,5,3,2); + testBinaryOpMV(-,F32,20.0,5.0,3,2); + testBinaryOpMV(-,F64,20.0,5.0,3,2); + testBinaryOpMV(*,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMV(*,S32,20,5,3,2); + testBinaryOpMV(*,F32,20.0,5.0,3,2); + testBinaryOpMV(*,F64,20.0,5.0,3,2); + testBinaryOpMV(*,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMV(/,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMV(/,S32,20,5,3,2); + testBinaryOpMV(/,F32,20.0,5.0,3,2); + testBinaryOpMV(/,F64,20.0,5.0,3,2); + testBinaryOpMV(/,C32,20.0+20.0i,5.0+5.0i,3,2); + + // Test Matrix-Scalar binary operations + #define testBinaryOpMS(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS) \ + { \ + printPositiveTestHeader(stdout, "psMatrixVectorArithmetic", "Test matrix-scalar psBinaryOp"); \ + printf("Operation: %s\n", #OP); \ + CREATE_AND_SET_IMAGE(outImage,TYPE,VALUE1,NROWS,NCOLS); \ + psScalar *inScalar = (psScalar*)psScalarAlloc(VALUE2,PS_TYPE_##TYPE); \ + printf("Input:\n"); \ + PRINT_MATRIX(outImage,TYPE); \ + PRINT_SCALAR(inScalar,TYPE); \ + outImage = (psImage*)psBinaryOp(outImage, outImage, #OP, psScalarCopy(inScalar)); \ + printf("Output:\n"); \ + PRINT_MATRIX(outImage,TYPE); \ + psFree(inScalar); \ + psFree(outImage); \ + CHECK_MEMORY; \ + printFooter(stdout, "psMatrixVectorArithmetic", "Test matrix-scalar psBinaryOp", true); \ + } + + testBinaryOpMS(+,S32,10,5,3,2); + testBinaryOpMS(+,F32,10.0,5.0,3,2); + testBinaryOpMS(+,F64,10.0,5.0,3,2); + testBinaryOpMS(+,C32,10.0+10.0i,5.0+5.0i,3,2); + testBinaryOpMS(-,S32,20,5,3,2); + testBinaryOpMS(-,F32,20.0,5.0,3,2); + testBinaryOpMS(-,F64,20.0,5.0,3,2); + testBinaryOpMS(*,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMS(*,S32,20,5,3,2); + testBinaryOpMS(*,F32,20.0,5.0,3,2); + testBinaryOpMS(*,F64,20.0,5.0,3,2); + testBinaryOpMS(*,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMS(/,C32,20.0+20.0i,5.0+5.0i,3,2); + testBinaryOpMS(/,S32,20,5,3,2); + testBinaryOpMS(/,F32,20.0,5.0,3,2); + testBinaryOpMS(/,F64,20.0,5.0,3,2); + testBinaryOpMS(/,C32,20.0+20.0i,5.0+5.0i,3,2); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic02.c (revision 12167) @@ -0,0 +1,269 @@ + +/** @file tst_psMatrixVectorArithmetic02.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver tests combinations of matrix, vector, and scalar unary operations including: + * Matrix with all math operators with S32, F32, F64, C32 + * Vector with all math operators with S32, F32, F64, C32 + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#include + + +#define CHECK_VECTOR(VECTOR,TYPE,TRUTH) \ +for(psS32 i=0; in; i++) { \ + if(cabs(VECTOR->data.TYPE[i])-cabs(TRUTH) > FLT_EPSILON){ \ + printf("ERROR:Truth and calculated values don't match for vector operation:\n"); \ + if(PS_IS_PSELEMTYPE_COMPLEX(VECTOR->type.type)) { \ + printf("Truth: %.2f%+.2fi\n", creal(VECTOR->data.TYPE[i]), cimag(VECTOR->data.TYPE[i])); \ + printf("Calculated: %.2f%+.2fi\n", creal(TRUTH), cimag(TRUTH)); \ + } else if(PS_IS_PSELEMTYPE_INT(VECTOR->type.type)) { \ + printf("Truth: %d\n", (psS32)(VECTOR->data.TYPE[i])); \ + printf("Calculated: %d\n", (psS32)(TRUTH)); \ + } else { \ + printf("Truth: %.2f\n", (double)(VECTOR->data.TYPE[i])); \ + printf("Calculated: %.2f\n", (double)(TRUTH)); \ + } \ + } \ +} \ +printf("\n"); + + +#define CHECK_MATRIX(IMAGE,TYPE,TRUTH) \ +for(psS32 i=IMAGE->numRows-1; i>-1; i--) { \ + for(psS32 j=0; jnumCols; j++) { \ + if(cabs(IMAGE->data.TYPE[i][j])-cabs(TRUTH) > FLT_EPSILON){ \ + printf("ERROR:Truth and calculated values don't match for matrix operation:\n"); \ + if(PS_IS_PSELEMTYPE_COMPLEX(IMAGE->type.type)) { \ + printf("Truth: %.2f%+.2fi\n", creal(IMAGE->data.TYPE[i][j]), cimag(IMAGE->data.TYPE[i][j])); \ + printf("Calculated: %.2f%+.2fi\n", creal(TRUTH), cimag(TRUTH)); \ + } else if(PS_IS_PSELEMTYPE_INT(IMAGE->type.type)) { \ + printf("Truth: %d\n", (psS32)(IMAGE->data.TYPE[i][j])); \ + printf("Calculated: %d\n", (psS32)(TRUTH)); \ + } else { \ + printf("Truth: %.2f\n", (double)(IMAGE->data.TYPE[i][j])); \ + printf("Calculated: %.2f\n", (double)(TRUTH)); \ + } \ + } \ + } \ + printf("\n"); \ +} \ +printf("\n"); + + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +#define CHECK_MEMORY \ +if( psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { \ + psError(PS_ERR_UNKNOWN, true,"Memory leaks detected."); \ + return 50; \ +} \ +psS32 nBad = psMemCheckCorruption(0); \ +if(nBad) { \ + psError(PS_ERR_UNKNOWN, true,"ERROR: Found %d bad memory blocks\n", nBad); \ + return 51; \ +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + // Test matrix unary operations + #define testUnaryOpM(OP,TYPE,VALUE1,VALUE2,NROWS,NCOLS,TRUTH) \ + { \ + printPositiveTestHeader(stdout, "psMatrixVectorArithmetic", "Test matrix psUnaryOp"); \ + printf("Operation: %s\n", #OP); \ + CREATE_AND_SET_IMAGE(inImage,TYPE,VALUE1,NROWS,NCOLS); \ + CREATE_AND_SET_IMAGE(outImage,TYPE,VALUE2,NROWS,NCOLS); \ + outImage = (psImage*)psUnaryOp(outImage, inImage, #OP); \ + CHECK_MATRIX(outImage,TYPE,TRUTH); \ + psFree(inImage); \ + psFree(outImage); \ + CHECK_MEMORY; \ + printFooter(stdout, "psMatrixVectorArithmetic", "Test matrix psUnaryOp", true); \ + } + + testUnaryOpM( abs, S32, -10, 0, 3, 2, 10 ); + testUnaryOpM( abs, F32, -10.0, 0.0, 3, 2, 10.0 ); + testUnaryOpM( abs, F64, -10.0, 0.0, 3, 2, 10.0 ); + testUnaryOpM( abs, C32, -10.0 - 10.0i, 0.0 + 0.0i, 3, 2,10+10i ); + testUnaryOpM( exp, S32, 10, 0, 3, 2, cexp(10)); + testUnaryOpM( exp, F32, 10.0, 0.0, 3, 2, cexp(10.0) ); + testUnaryOpM( exp, F64, 10.0, 0.0, 3, 2, cexp(10.0) ); + testUnaryOpM( exp, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, cexp(1.0+1.0i) ); + testUnaryOpM( ln, S32, 10, 0, 3, 2, clog(10) ); + testUnaryOpM( ln, F32, 10.0, 0.0, 3, 2, clog(10.0) ); + testUnaryOpM( ln, F64, 10.0, 0.0, 3, 2, clog(10.0) ); + testUnaryOpM( ln, C32, 10.0 + 10.0i, 0.0 + 0.0i, 3, 2, clog(10.0+10.0i) ); + testUnaryOpM( ten, S32, 3, 0, 3, 2, 1000 ); + testUnaryOpM( ten, F32, 3.0, 0.0, 3, 2, 1000 ); + testUnaryOpM( ten, F64, 3.0, 0.0, 3, 2, 1000 ); + testUnaryOpM( ten, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, 10.0 ); + testUnaryOpM( log, S32, 1000, 0, 3, 2, 3 ); + testUnaryOpM( log, F32, 1000.0, 0.0, 3, 2, 3 ); + testUnaryOpM( log, F64, 1000.0, 0.0, 3, 2, 3 ); + testUnaryOpM( log, C32, 1000.0 + 0.0i, 0.0 + 0.0i, 3, 2, 3 ); + testUnaryOpM( sin, S32, M_PI_2, 0, 3, 2, 1 ); + testUnaryOpM( sin, F32, M_PI_2, 0.0, 3, 2, 1.0 ); + testUnaryOpM( sin, F64, M_PI_2, 0.0, 3, 2, 1.0 ); + testUnaryOpM( sin, C32, M_PI_2 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0 ); + testUnaryOpM( dsin, S32, 90, 0, 3, 2 , 1); + testUnaryOpM( dsin, F32, 90.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dsin, F64, 90.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dsin, C32, 90.0 + 00.0i, 0.0 + 0.0i, 3, 2, 1.0 ); + testUnaryOpM( cos, S32, 0, 0, 3, 2, 1 ); + testUnaryOpM( cos, F32, 0.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( cos, F64, 0.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( cos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0 ); + testUnaryOpM( dcos, S32, 0, 0, 3, 2, 1 ); + testUnaryOpM( dcos, F32, 0.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dcos, F64, 0.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dcos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 1.0 ); + testUnaryOpM( tan, S32, M_PI_4, 0, 3, 2, 1); + testUnaryOpM( tan, F32, M_PI_4, 0.0, 3, 2, 1.0 ); + testUnaryOpM( tan, F64, M_PI_4, 0.0, 3, 2, 1.0 ); + testUnaryOpM( tan, C32, M_PI_4 + 0.0i, 0.0 + 0.0i, 3, 2, 1 ); + testUnaryOpM( dtan, S32, 45, 0, 3, 2, 1 ); + testUnaryOpM( dtan, F32, 45.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dtan, F64, 45.0, 0.0, 3, 2, 1.0 ); + testUnaryOpM( dtan, C32, 45.0 + 45.0i, 0.0 + 0.0i, 3, 2, 1.0 ); + testUnaryOpM( asin, S32, 1, 0, 3, 2, M_PI_2); + testUnaryOpM( asin, F32, 1.0, 0.0, 3, 2, M_PI_2 ); + testUnaryOpM( asin, F64, 1.0, 0.0, 3, 2, M_PI_2); + testUnaryOpM( asin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, M_PI_2); + testUnaryOpM( dasin, S32, 1.0, 0, 3, 2, 90 ); + testUnaryOpM( dasin, F32, 1.0, 0.0, 3, 2, 90.0 ); + testUnaryOpM( dasin, F64, 1.0, 0.0, 3, 2, 90.0 ); + testUnaryOpM( dasin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 2, 90.0 ); + testUnaryOpM( acos, S32, 0, 0, 3, 2, M_PI_2); + testUnaryOpM( acos, F32, 0.0, 0.0, 3, 2, M_PI_2 ); + testUnaryOpM( acos, F64, 0.0, 0.0, 3, 2, M_PI_2 ); + testUnaryOpM( acos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, M_PI_2 ); + testUnaryOpM( dacos, S32, 0, 0, 3, 2, 90 ); + testUnaryOpM( dacos, F32, 0.0, 0.0, 3, 2, 90.0 ); + testUnaryOpM( dacos, F64, 0.0, 0.0, 3, 2, 90.0 ); + testUnaryOpM( dacos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 2, 90.0 ); + testUnaryOpM( atan, S32, 1, 0, 3, 2, M_PI_4); + testUnaryOpM( atan, F32, 1.0, 0.0, 3, 2, M_PI_4 ); + testUnaryOpM( atan, F64, 1.0, 0.0, 3, 2, M_PI_4); + testUnaryOpM( atan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, M_PI_4); + testUnaryOpM( datan, S32, 1, 0, 3, 2, 45 ); + testUnaryOpM( datan, F32, 1.0, 0.0, 3, 2, 45.0 ); + testUnaryOpM( datan, F64, 1.0, 0.0, 3, 2, 45.0 ); + testUnaryOpM( datan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 2, 45.0 ); + + + // Test vector unary operations + #define testUnaryOpV(OP,TYPE,VALUE1,VALUE2,SIZE,TRUTH) \ + { \ + printPositiveTestHeader(stdout, "psMatrixVectorArithmetic", "Test vector psUnaryOp"); \ + printf("Operation: %s\n", #OP); \ + CREATE_AND_SET_VECTOR(inVector,TYPE,VALUE1,SIZE); \ + CREATE_AND_SET_VECTOR(outVector,TYPE,VALUE2,SIZE); \ + outVector = (psVector*)psUnaryOp(outVector, inVector, #OP); \ + CHECK_VECTOR(outVector,TYPE,TRUTH); \ + psFree(inVector); \ + psFree(outVector); \ + CHECK_MEMORY; \ + printFooter(stdout, "psMatrixVectorArithmetic", "Test vector psUnaryOp", true); \ + } + + testUnaryOpV( abs, S32, -10, 0, 3, 10 ); + testUnaryOpV( abs, F32, -10.0, 0.0, 3, 10.0 ); + testUnaryOpV( abs, F64, -10.0, 0.0, 3, 10.0 ); + testUnaryOpV( abs, C32, -10.0 - 10.0i, 0.0 + 0.0i, 3, 10+10i ); + testUnaryOpV( exp, S32, 10, 0, 3, cexp(10)); + testUnaryOpV( exp, F32, 10.0, 0.0, 3, cexp(10.0) ); + testUnaryOpV( exp, F64, 10.0, 0.0, 3, cexp(10.0) ); + testUnaryOpV( exp, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, cexp(1.0+1.0i) ); + testUnaryOpV( ln, S32, 10, 0, 3, clog(10) ); + testUnaryOpV( ln, F32, 10.0, 0.0, 3, clog(10.0) ); + testUnaryOpV( ln, F64, 10.0, 0.0, 3, clog(10.0) ); + testUnaryOpV( ln, C32, 10.0 + 10.0i, 0.0 + 0.0i, 3, clog(10.0+10.0i) ); + testUnaryOpV( ten, S32, 3, 0, 3, 1000 ); + testUnaryOpV( ten, F32, 3.0, 0.0, 3, 1000 ); + testUnaryOpV( ten, F64, 3.0, 0.0, 3, 1000 ); + testUnaryOpV( ten, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 10.0 ); + testUnaryOpV( log, S32, 1000, 0, 3, 3 ); + testUnaryOpV( log, F32, 1000.0, 0.0, 3, 3 ); + testUnaryOpV( log, F64, 1000.0, 0.0, 3, 3 ); + testUnaryOpV( log, C32, 1000.0 + 0.0i, 0.0 + 0.0i, 3, 3 ); + testUnaryOpV( sin, S32, M_PI_2, 0, 3, 1 ); + testUnaryOpV( sin, F32, M_PI_2, 0.0, 3, 1.0 ); + testUnaryOpV( sin, F64, M_PI_2, 0.0, 3, 1.0 ); + testUnaryOpV( sin, C32, M_PI_2 + 0.0i, 0.0 + 0.0i, 3, 1.0 ); + testUnaryOpV( dsin, S32, 90, 0, 3, 1); + testUnaryOpV( dsin, F32, 90.0, 0.0, 3, 1.0 ); + testUnaryOpV( dsin, F64, 90.0, 0.0, 3, 1.0 ); + testUnaryOpV( dsin, C32, 90.0 + 00.0i, 0.0 + 0.0i, 3, 1.0 ); + testUnaryOpV( cos, S32, 0, 0, 3, 1 ); + testUnaryOpV( cos, F32, 0.0, 0.0, 3, 1.0 ); + testUnaryOpV( cos, F64, 0.0, 0.0, 3, 1.0 ); + testUnaryOpV( cos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 1.0 ); + testUnaryOpV( dcos, S32, 0, 0, 3, 1 ); + testUnaryOpV( dcos, F32, 0.0, 0.0, 3, 1.0 ); + testUnaryOpV( dcos, F64, 0.0, 0.0, 3, 1.0 ); + testUnaryOpV( dcos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 1.0 ); + testUnaryOpV( tan, S32, M_PI_4, 0, 3, 1); + testUnaryOpV( tan, F32, M_PI_4, 0.0, 3, 1.0 ); + testUnaryOpV( tan, F64, M_PI_4, 0.0, 3, 1.0 ); + testUnaryOpV( tan, C32, M_PI_4 + 0.0i, 0.0 + 0.0i, 3, 1 ); + testUnaryOpV( dtan, S32, 45, 0, 3, 1 ); + testUnaryOpV( dtan, F32, 45.0, 0.0, 3, 1.0 ); + testUnaryOpV( dtan, F64, 45.0, 0.0, 3, 1.0 ); + testUnaryOpV( dtan, C32, 45.0 + 45.0i, 0.0 + 0.0i, 3, 1.0 ); + testUnaryOpV( asin, S32, 1, 0, 3, M_PI_2); + testUnaryOpV( asin, F32, 1.0, 0.0, 3, M_PI_2 ); + testUnaryOpV( asin, F64, 1.0, 0.0, 3, M_PI_2); + testUnaryOpV( asin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, M_PI_2); + testUnaryOpV( dasin, S32, 1.0, 0, 3, 90 ); + testUnaryOpV( dasin, F32, 1.0, 0.0, 3, 90.0 ); + testUnaryOpV( dasin, F64, 1.0, 0.0, 3, 90.0 ); + testUnaryOpV( dasin, C32, 1.0 + 1.0i, 0.0 + 0.0i, 3, 90.0 ); + testUnaryOpV( acos, S32, 0, 0, 3, M_PI_2); + testUnaryOpV( acos, F32, 0.0, 0.0, 3, M_PI_2 ); + testUnaryOpV( acos, F64, 0.0, 0.0, 3, M_PI_2 ); + testUnaryOpV( acos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, M_PI_2 ); + testUnaryOpV( dacos, S32, 0, 0, 3, 90 ); + testUnaryOpV( dacos, F32, 0.0, 0.0, 3, 90.0 ); + testUnaryOpV( dacos, F64, 0.0, 0.0, 3, 90.0 ); + testUnaryOpV( dacos, C32, 0.0 + 0.0i, 0.0 + 0.0i, 3, 90.0 ); + testUnaryOpV( atan, S32, 1, 0, 3, M_PI_4); + testUnaryOpV( atan, F32, 1.0, 0.0, 3, M_PI_4 ); + testUnaryOpV( atan, F64, 1.0, 0.0, 3, M_PI_4); + testUnaryOpV( atan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, M_PI_4); + testUnaryOpV( datan, S32, 1, 0, 3, 45 ); + testUnaryOpV( datan, F32, 1.0, 0.0, 3, 45.0 ); + testUnaryOpV( datan, F64, 1.0, 0.0, 3, 45.0 ); + testUnaryOpV( datan, C32, 1.0 + 0.0i, 0.0 + 0.0i, 3, 45.0 ); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic03.c (revision 12167) @@ -0,0 +1,315 @@ +/** @file tst_psMatrixVectorArithmetic03.c + * + * @brief Test driver for psMatrixVector arithmetic functions + * + * This test driver contains negative tests for psBinaryOp and psUanryOp: + * Check for NULL arguments + * Inconsistent element types + * Inconsistent element count + * Inconsistent dimensionality + * Division by zero + * Attempt to use min with complex numbers + * Attempt to use max with complex numbers + * Invalid operation + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define PRINT_VECTOR(VECTOR,TYPE) \ +for(psS32 i=0; in; i++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(VECTOR->type.type)) { \ + printf("%f+%fi ", creal(VECTOR->data.TYPE[i]), cimag(VECTOR->data.TYPE[i])); \ + } else if(PS_IS_PSELEMTYPE_INT(VECTOR->type.type)) { \ + printf("%d ", (psS32)VECTOR->data.TYPE[i]); \ + } else { \ + printf("%f ", (double)VECTOR->data.TYPE[i]); \ + } \ +} \ +printf("\n\n"); + +#define PRINT_MATRIX(IMAGE,TYPE) \ +for(psS32 i=IMAGE->numRows-1; i>-1; i--) { \ + for(psS32 j=0; jnumCols; j++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IMAGE->type.type)) { \ + printf("%f+%fi ", creal(IMAGE->data.TYPE[i][j]), cimag(IMAGE->data.TYPE[i][j])); \ + } else if(PS_IS_PSELEMTYPE_INT(IMAGE->type.type)) { \ + printf("%d ", (psS32)IMAGE->data.TYPE[i][j]); \ + } else { \ + printf("%f ", (double)IMAGE->data.TYPE[i][j]); \ + } \ + } \ + printf("\n"); \ +} \ +printf("\n"); + + +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = (psVector*)psVectorAlloc(SIZE, PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + CREATE_AND_SET_IMAGE(image1,F64,0,3,3); + CREATE_AND_SET_IMAGE(image2,F64,0,3,3); + CREATE_AND_SET_IMAGE(image3,F32,0,3,3); + CREATE_AND_SET_IMAGE(image4,F64,0,2,2); + CREATE_AND_SET_IMAGE(image5,C32,1+1i,3,3); + CREATE_AND_SET_VECTOR(vector1,F64,0,2); + CREATE_AND_SET_VECTOR(vector2,F64,0,3); + + // Check for NULL output argument + printPositiveTestHeader(stdout,"psBinaryOp", "Check for output generated"); + psImage* image6 = (psImage*)psBinaryOp(NULL, image1, "+", image2); + if (image6 == NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp failed to make an image given no output to recycle."); + return 1; + } + printFooter(stdout,"psBinaryOp","Check for output generated",true); + + // Check for NULL input argument #1 + printPositiveTestHeader(stdout,"psBinaryOp","Check for null input arg 1"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, NULL, "+", image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given a NULL first operand."); + return 2; + } + printFooter(stdout,"psBinaryOp","Check for null input arg 1",true); + + // Check for NULL input argument #2 + printPositiveTestHeader(stdout,"psBinaryOp","Check for null input arg 2"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, image1, "+", NULL); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given a NULL second operand."); + return 3; + } + printFooter(stdout,"psBinaryOp","Check for null input arg 2",true); + + // Check for NULL operand + printPositiveTestHeader(stdout,"psBinaryOp","Check for null operand"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, image1, NULL, image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given a NULL operator."); + return 4; + } + printFooter(stdout,"psBinaryOp","Check for null operand",true); + + // Check for null output + printPositiveTestHeader(stdout,"psUnaryOp","Check for null output"); + image6 = (psImage*)psUnaryOp(NULL, image1, "sin"); + if (image6 == NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp failed to make an image given no output to recycle."); + return 5; + } + printFooter(stdout,"psUnaryOp","Check for null output",true); + + // Check for NULL input arg + printPositiveTestHeader(stdout,"psUnaryOp","Check for null input"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psUnaryOp(image6, NULL, "sin"); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned a result given a NULL operand."); + return 6; + } + printFooter(stdout,"psUnaryOp","Check for null input",true); + + // Check for NULL operand + printPositiveTestHeader(stdout,"psUnaryOp","Check for null operator"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psUnaryOp(image6, image1, NULL); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned a result given a NULL operator."); + return 7; + } + printFooter(stdout,"psUnaryOp","Check for null operator",true); + + // Inconsistent element types + printPositiveTestHeader(stdout,"psBinaryOp", "Inconsistent element types"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, image3, "+", image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given operands of different types."); + return 8; + } + printFooter(stdout,"psBinaryOp","Inconsistent element types",true); + + // Check unary op to convert to correct type + printPositiveTestHeader(stdout,"psUnaryOp","Check output type conversion"); + image6 = psImageCopy(image6,image2,PS_TYPE_F64); + image6 = (psImage*)psUnaryOp(image6, image3, "sin"); + if (image6 == NULL || image6->type.type != PS_TYPE_F32) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp failed to convert the type of the output."); + return 9; + } + printFooter(stdout,"psUnaryOp","Check output type conversion",true); + + // Inconsistent element count + printPositiveTestHeader(stdout,"psBinaryOp","Check for inconsistent elements"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, image4, "+", image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given operands of different sizes."); + return 10; + } + printFooter(stdout,"psBinaryOp","Check for inconsistent elements",true); + + // Inconsistent element in input and output + printPositiveTestHeader(stdout,"psUnaryOp","Check inconsistent elements in input and output"); + image6 = psImageCopy(image6,image2,PS_TYPE_F64); + image6 = (psImage*)psUnaryOp(image6, image4, "sin"); + if (image6 == NULL || + image6->numCols != image6->numCols || + image6->numRows != image6->numRows) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp failed to resize the output."); + return 11; + } + printFooter(stdout,"psUnaryOp","Check inconsistent elements in input and output",true); + + // Inconsistent size of input 1 and input 2 + printPositiveTestHeader(stdout,"psBinaryOp","Check inconsistent size"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, vector1, "+", image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given operands of different sizes."); + return 12; + } + printFooter(stdout,"psBinaryOp","Check inconsistent size",true); + + // Inconsistent size of input 1 and input 2 + printPositiveTestHeader(stdout,"psBinaryOp","Check inconsistent size"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + vector1->type.dimen = PS_DIMEN_TRANSV; + image6 = (psImage*)psBinaryOp(image6, vector1, "+", image2); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned a result given operands of different sizes."); + return 13; + } + printFooter(stdout, "psBinaryOp", "Check inconsistent size", true); + + + // Inconsistent dimensionality + printPositiveTestHeader(stdout,"psUnaryOp","Check inconsistent dimensionality"); + image6 = psImageCopy(image6,image2,PS_TYPE_F64); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an two error messages"); + image6 = (psImage*)psUnaryOp(image6, vector2, "sin"); + if (image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned result given wrong type out parameter."); + return 14; + } + printFooter(stdout,"psUnaryOp","Check inconsistent dimensionality",true); + + // Attempt to use min with complex numbers + printPositiveTestHeader(stdout,"psBinaryOp","Attempt to use min with complex numbers"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + image6 = (psImage*)psBinaryOp(image6, image5, "min", image5); + if(image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned result with min of complex numbers"); + return 15; + } + printFooter(stdout, "psBinaryOp", "Attempt to use min with complex numbers", true); + + + // Attempt to use max with complex numbers + printPositiveTestHeader(stdout,"psBinaryOp","Attempt to use max with complex numbers"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psBinaryOp(image6, image5, "max", image5); + if(image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned result with max of complex numbers"); + return 16; + } + printFooter(stdout, "psBinaryOp", "Attempt to use max with complex numbers", true); + + + // Invalid operation + printPositiveTestHeader(stdout,"psBinary","Attempt to use invalid operator"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error messgae"); + image6 = (psImage*)psBinaryOp(image6, image1, "yarg", image2); + if(image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psBinaryOp returned result with invalid operator"); + return 17; + } + printFooter(stdout,"psBinaryOp","Attempt to use invalid operator",true); + + printPositiveTestHeader(stdout,"psUnaryOp","Attempt to use invalid operator"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + image6 = (psImage*)psUnaryOp(image6, image1, "yarg"); + if(image6 != NULL) { + psLogMsg(__func__,PS_LOG_ERROR,"psUnaryOp returned result with invalid operator"); + return 18; + } + printFooter(stdout, "psUnaryOp", "Attempt to use invalid operator", true); + + CREATE_AND_SET_VECTOR(vector4,F64,0,3); + CREATE_AND_SET_VECTOR(vector5,F64,0,3); + + // Input parameter with dimension of PS_DIMEN_OTHER + printPositiveTestHeader(stdout,"psBinaryOp","Attempt to use input with PS_DIMEN_OTHER"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + vector4->type.dimen = PS_DIMEN_OTHER; + if ( psBinaryOp(NULL,vector4,"+",vector5) != NULL) { + psError(PS_ERR_UNKNOWN, true,"psBinaryOp should return null when input dimen PS_DIMEN_OTHER."); + return 19; + } + vector4->type.dimen = PS_DIMEN_VECTOR; + printFooter(stdout,"psBinaryOp","Attempt to use input with PS_DIMEN_OTHER",true); + + // Input parameter with dimension of PS_DIMEN_OTHER + printPositiveTestHeader(stdout,"psUnaryOp","Attempt to use input with PS_DIMEN_OTHER"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + vector4->type.dimen = PS_DIMEN_OTHER; + if ( psUnaryOp(NULL,vector4,"sin") != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psUnaryOp should return null when input dimen PS_DIMEN_OTHER"); + return 20; + } + vector4->type.dimen = PS_DIMEN_VECTOR; + printFooter(stdout,"psUnaryOp","Attempt to use input with PS_DIMEN_OTHER",true); + + psFree(vector4); + psFree(vector5); + psFree(image1); + psFree(image2); + psFree(image3); + psFree(image4); + psFree(image5); + psFree(vector1); + psFree(vector2); + + psS32 nLeaks = psMemCheckLeaks(0,NULL,stdout,false); + if(nLeaks != 0) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected"); + return 50; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + psError(PS_ERR_UNKNOWN,true,"Memory corruption detected"); + return 51; + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic04.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMatrixVectorArithmetic04.c (revision 12167) @@ -0,0 +1,213 @@ +/** @file tst_psMatrixVectorArithmetic04.c + * + * @brief Test driver for psBinary arithmetic operations with scalars + * + * This test driver will test the following binary operation with scalar inputs + * vector addition with scalar in first argument + * image addition with scalar in second argument + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-08-24 01:24:24 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testBinOpScalarFirst(void); +static psS32 testBinOpScalarSecond(void); +static psS32 testBinOpScalarBoth(void); +static psS32 testUnaryOpScalar(void); + +testDescription testsBinary[] = { + {testBinOpScalarFirst,737,"psBinaryOp",0,false}, + {testBinOpScalarSecond,737,"psBinaryOp",0,false}, + {testBinOpScalarBoth,737,"psBinaryOp",0,false}, + {NULL} + }; + +testDescription testUnary[] = { + {testUnaryOpScalar,737,"psUnaryOp",0,false}, + {NULL} + }; + +// Create vector +#define CREATE_AND_SET_VECTOR(NAME,TYPE,VALUE,SIZE) \ +psVector *NAME = psVectorAlloc(SIZE,PS_TYPE_##TYPE); \ +for(psS32 i=0; idata.TYPE[i] = VALUE; \ +} \ +NAME->n = SIZE; + +// Create image +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(psS32 i=0; inumRows; i++) { \ + for(psS32 j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + runTestSuite(stderr,"psBinaryOp",testsBinary,argc,argv); + runTestSuite(stderr,"psUnaryOp",testUnary,argc,argv); + + return 0; +} + +psS32 testBinOpScalarFirst(void) +{ + CREATE_AND_SET_VECTOR(vector1,S8,1,5) + CREATE_AND_SET_VECTOR(vector2,S8,0,5) + + psScalar* inScalar1 = psScalarAlloc(2,PS_TYPE_S8); + + // Add vector and scalar + vector2 = (psVector*)psBinaryOp(vector2,inScalar1,"+",vector1); + // Verify the result vector + for(psS32 i=0; in; i++) { + if(vector2->data.S8[i] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return vector[%d]",i); + return 1; + } + } + psFree(vector1); + psFree(vector2); + + CREATE_AND_SET_VECTOR(vector3,S8,1,5); + CREATE_AND_SET_VECTOR(vector4,S8,0,3); + + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + vector4->type.dimen = PS_DIMEN_TRANSV; + vector4 = (psVector*)psBinaryOp(vector4,inScalar2,"+",vector3); + for(psS32 i=0; in; i++) { + if(vector4->data.S8[i] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return vector[%d]",i); + return 2; + } + } + psFree(vector3); + psFree(vector4); + + CREATE_AND_SET_IMAGE(image1,S8,1,5,5) + psImage* image2 = NULL; + + psScalar* inScalar3 = psScalarAlloc(2,PS_TYPE_S8); + + image2 = (psImage*)psBinaryOp(image2,inScalar3,"+",image1); + for(psS32 i=0; inumRows; i++) { + for(psS32 j=0; jnumCols; j++) { + if(image2->data.S8[i][j] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return image[%d][%d]",i,j); + return 10; + } + } + } + psFree(image1); + psFree(image2); + + return 0; +} + +psS32 testBinOpScalarSecond(void) +{ + CREATE_AND_SET_VECTOR(vector1,S8,1,5) + CREATE_AND_SET_VECTOR(vector2,S8,0,5) + + psScalar* inScalar1 = psScalarAlloc(2,PS_TYPE_S8); + + vector2 = (psVector*)psBinaryOp(vector2,vector1,"+",inScalar1); + for(psS32 i=0; in; i++) { + if(vector2->data.S8[i] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return vector[%d]",i); + return 1; + } + } + psFree(vector1); + psFree(vector2); + + CREATE_AND_SET_VECTOR(vector3,S8,1,5); + CREATE_AND_SET_VECTOR(vector4,S8,0,3); + + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + vector4->type.dimen = PS_DIMEN_TRANSV; + vector4 = (psVector*)psBinaryOp(vector4,vector3,"+",inScalar2); + for(psS32 i=0; in; i++) { + if(vector4->data.S8[i] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return vector[%d]",i); + return 2; + } + } + psFree(vector3); + psFree(vector4); + + CREATE_AND_SET_IMAGE(image1,S8,1,5,5); + psImage* image2 = NULL; + + psScalar* inScalar3 = psScalarAlloc(2,PS_TYPE_S8); + + image2 = (psImage*)psBinaryOp(image2,image1,"+",inScalar3); + for(psS32 i=0; inumRows; i++) { + for(psS32 j=0; jnumCols; j++) { + if(image2->data.S8[i][j] != 3 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return image[%d][%d]",i,j); + return 10; + } + } + } + psFree(image1); + psFree(image2); + + return 0; +} + +psS32 testBinOpScalarBoth(void) +{ + psScalar* inScalar1 = psScalarAlloc(1,PS_TYPE_S8); + psScalar* inScalar2 = psScalarAlloc(2,PS_TYPE_S8); + psScalar* outScalar = psScalarAlloc(4,PS_TYPE_S8); + + outScalar = (psScalar*)psBinaryOp(outScalar,inScalar1,"+",inScalar2); + if(outScalar->data.S8 != 3) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return scalar"); + return 3; + } + psFree(outScalar); + + psScalar* inScalar3 = psScalarAlloc(10,PS_TYPE_S8); + psScalar* inScalar4 = psScalarAlloc(20,PS_TYPE_S8); + psScalar* outScalar1 = NULL; + + outScalar1 = (psScalar*)psBinaryOp(outScalar1,inScalar3,"+",inScalar4); + if(outScalar1->data.S8 != 30 ) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return scalar"); + return 4; + } + psFree(outScalar1); + + return 0; +} + +psS32 testUnaryOpScalar(void) +{ + psScalar* inScalar = psScalarAlloc(-1,PS_TYPE_F32); + psScalar* outScalar = NULL; + + outScalar = (psScalar*)psUnaryOp(outScalar,inScalar,"abs"); + if(outScalar->data.F32 != 1) { + psError(PS_ERR_UNKNOWN,true,"Unexpected value in return scalar = %d in = %d",outScalar->data.F32,inScalar->data.F32); + return 5; + } + psFree(outScalar); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psMinimizeLMM.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMinimizeLMM.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMinimizeLMM.c (revision 12167) @@ -0,0 +1,296 @@ +/***************************************************************************** + This routine must ensure that psMinimizeLM() works correctly. + + XXX: This code needs a lot of additional test case work. + XXX: Use the tst_template. + XXX: Print headers and footers. + XXX: Why are we flushing stdout? + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include +#define NUM_ITERATIONS 100 +#define ERR_TOL 1e-6 +#define NUM_DATA_POINTS 300 +#define NUM_PARAMS 3 +#define VERBOSE 0 +float expectedParm[NUM_PARAMS]; + + +float function(const psVector *params, // Paramters + const psVector *x // Ordinate + ) +{ + return params->data.F32[0] * + expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))) + + params->data.F32[2]; +} + +void derivatives(psVector *deriv, // Derivatives + const psVector *params, // Paramters + const psVector *x // Ordinate + ) +{ + deriv->data.F32[0] = expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))); + deriv->data.F32[1] = params->data.F32[0] * (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1])) / params->data.F32[1] / params->data.F32[1] / params->data.F32[1] * expf(- (PS_SQR(x->data.F32[0]) + PS_SQR(x->data.F32[1]) / 2.0 / PS_SQR(params->data.F32[1]))); + deriv->data.F32[2] = 1.0; +} + + + +/***************************************************************************** +myFunc(): + sum = param[0] * x[0] * x[1] + + param[1] * x[0] + + param[2] * x[0]^2 + + param[3] * x[1] + + param[4] * x[1]^2 + + *****************************************************************************/ +psF32 fitFunc(psVector *deriv, + psVector *params, + psVector *x) +{ + if ((deriv == NULL) || (params == NULL) || (x == NULL)) { + psError(PS_ERR_UNKNOWN, true, "deriv or params or x is NULL.\n"); + } + + derivatives(deriv, params, x); + return function(params, x); +} + +psS32 t01() +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Random number generator; using known seed + psMinimization *min = psMinimizationAlloc(NUM_ITERATIONS, ERR_TOL); + psArray *ordinates = psArrayAlloc(NUM_DATA_POINTS); + psVector *coordinates = psVectorAlloc(NUM_DATA_POINTS, PS_TYPE_F32); + psVector *errors = psVectorAlloc(NUM_DATA_POINTS, PS_TYPE_F32); + ordinates->n = NUM_DATA_POINTS; + coordinates->n = NUM_DATA_POINTS; + errors->n = NUM_DATA_POINTS; + psVector *params = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + params->n = NUM_PARAMS; + psVector *trueParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + trueParams->n = NUM_PARAMS; + + trueParams->data.F32[0] = 100.0; // Normalisation + trueParams->data.F32[1] = 3.0; // Width + trueParams->data.F32[2] = 10.0; // Background + + // Set parameters + for (long i = 0; i < NUM_PARAMS; i++) { + // So we're not starting right on the true value: + params->data.F32[i] = trueParams->data.F32[i] * (1.0 - psRandomGaussian(rng) / 10.0); + } + + for (long i = 0; i < NUM_DATA_POINTS; i++) { + psVector *x = psVectorAlloc(2, PS_TYPE_F32); + x->data.F32[0] = 10.0 * psRandomUniform(rng) - 5.0; + x->data.F32[1] = 10.0 * psRandomUniform(rng) - 5.0; + ordinates->data[i] = x; + // Add some noise + coordinates->data.F32[i] = function(params, x) + 0.1 * (2.0 * psRandomGaussian(rng) - 1.0); + errors->data.F32[i] = 0.1; + if (VERBOSE) { + printf("Data %ld: (%f, %f) --> %f\n", + i, x->data.F32[0], x->data.F32[1], coordinates->data.F32[i]); + } + } + + if (!psMinimizeLMChi2(min, NULL, params, NULL, ordinates, coordinates, errors, + (psMinimizeLMChi2Func)fitFunc)) { + printf("TEST ERROR: psMinimizeLMChi2() returned FALSE.\n"); + fflush(stdout); + testStatus = false; + } else { + printf("Minimisation took %d iterations\n", min->iter); + printf("chi^2 at the minimum is %.3g\n", min->value); + for (long i = 0; i < NUM_PARAMS; i++) { + printf("Parameter %ld at the minimum is %.3f, expected: %f\n", i, + params->data.F32[i], trueParams->data.F32[i]); + fflush(stdout); + } + float diff = 0.0; + for (long i = 0; i < NUM_DATA_POINTS; i++) { + psVector *x = ordinates->data[i]; + float fitted = function(trueParams, x); + float expected = function(params, x); + diff += (fitted - expected) / fabsf(expected); + if (VERBOSE) { + printf("Data point %ld: Fitted: %f, expected: %f\n", i, fitted, expected); + } + fflush(stdout); + } + printf("Mean relative difference is %f\n", diff/(float)NUM_DATA_POINTS); + + } + + psFree(min); + psFree(params); + psFree(trueParams); + psFree(ordinates); + psFree(coordinates); + psFree(errors); + psFree(rng); + psMemCheckCorruption(1); + psS32 memLeaks = psMemCheckLeaks(currentId, NULL, NULL, false); + if (0 != memLeaks) { + printf("TEST ERROR: Memory Leaks! (%d leaks).\n", memLeaks); + fflush(stdout); + // XXX: This is causing a seg fault + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return (testStatus); +} + +#define NUM_ITER 10 +#define TOL 20.0 +psS32 tst_psMinimizationAlloc() +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + + psMinimization *tmp = psMinimizationAlloc(NUM_ITER, TOL); + if (tmp == NULL) { + printf("TEST ERROR: psMinimizationAlloc() returned FALSE.\n"); + testStatus = false; + } else { + if (tmp->maxIter != NUM_ITER) { + printf("TEST ERROR: psMinimizationAlloc() did not properly set ->maxIter.\n"); + testStatus = false; + } + + if (tmp->tol != TOL) { + printf("TEST ERROR: psMinimizationAlloc() did not properly set ->tol.\n"); + testStatus = false; + } + + if (tmp->value != 0.0) { + printf("TEST ERROR: psMinimizationAlloc() did not properly set ->value.\n"); + testStatus = false; + } + + if (tmp->iter != 0) { + printf("TEST ERROR: psMinimizationAlloc() did not properly set ->iter.\n"); + testStatus = false; + } + + if (!isnan(tmp->lastDelta)) { + printf("TEST ERROR: psMinimizationAlloc() did not properly set ->lastDelta.\n"); + testStatus = false; + } + psFree(tmp); + } + + psMemCheckCorruption(1); + psS32 memLeaks = psMemCheckLeaks(currentId, NULL, NULL, false); + if (0 != memLeaks) { + printf("TEST ERROR: Memory Leaks! (%d leaks).\n", memLeaks); + testStatus = false; + } + + return(testStatus); +} + + +#define NUM_ITER 10 +#define TOL 20.0 +psS32 tst_psMinConstrainAlloc() +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + + psMinConstrain *tmp = psMinConstrainAlloc(NUM_ITER, TOL); + if (tmp == NULL) { + printf("TEST ERROR: psMinConstrainAlloc() returned FALSE.\n"); + testStatus = false; + } else { + if (tmp->paramMask != NULL) { + printf("TEST ERROR: psMinConstrainAlloc() did not properly set ->paramMask.\n"); + testStatus = false; + } + + if (tmp->paramMax != NULL) { + printf("TEST ERROR: psMinConstrainAlloc() did not properly set ->paramMax.\n"); + testStatus = false; + } + + if (tmp->paramMin != NULL) { + printf("TEST ERROR: psMinConstrainAlloc() did not properly set ->paramMin.\n"); + testStatus = false; + } + + if (tmp->paramDelta != NULL) { + printf("TEST ERROR: psMinConstrainAlloc() did not properly set ->paramDelta.\n"); + testStatus = false; + } + + psFree(tmp); + } + + psMemCheckCorruption(1); + psS32 memLeaks = psMemCheckLeaks(currentId, NULL, NULL, false); + if (0 != memLeaks) { + printf("TEST ERROR: Memory Leaks! (%d leaks).\n", memLeaks); + testStatus = false; + } + + return(testStatus); +} + + +psS32 main() +{ + psLogSetFormat("HLNM"); + psTraceSetDestination(1); + psTraceSetLevel(".", 0); + psTraceSetLevel(__func__, 0); + psTraceSetLevel("t01", 0); + psTraceSetLevel("psMinimizeLMChi2_OLD", 0); + psTraceSetLevel("psMinimizeLMChi2", 0); + psTraceSetLevel("psMinimizeGaussNewtonDelta", 0); + psTraceSetLevel("psMinimizeGaussNewtonDelta_EAM", 0); + psTraceSetLevel("p_psMinLM_GuessABP", 0); + psTraceSetLevel("p_psMinLM_GuessABP_EAM", 0); + psTraceSetLevel("p_psMinLM_SetABX", 0); + psTraceSetLevel("psGaussJordan", 0); + psTraceSetLevel("psMinimizationAlloc", 0); + psTraceSetLevel("psMinConstrainAlloc", 0); + psTraceSetLevel("psMemCheckMinimization", 0); + psTraceSetLevel("p_psDetermineBracket", 0); + psTraceSetLevel("p_psDetermineBracket2", 0); + psTraceSetLevel("p_psLineMin", 0); + psTraceSetLevel("psMinimizePowell", 0); + psTraceSetLevel("myPowellChi2Func", 0); + psTraceSetLevel("psMinimizeChi2Powell", 0); + psTraceSetLevel("BuildSums1D", 0); + psTraceSetLevel("BuildSums2D", 0); + psTraceSetLevel("Polynomial2DEvalVectorD", 0); + psTraceSetLevel("vectorFitPolynomial1DCheby", 0); + psTraceSetLevel("VectorFitPolynomial1DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial1D", 0); + psTraceSetLevel("psVectorClipFitPolynomial1D", 0); + + psTrace(__func__, 2, "Calling new psMinimize().\n"); + psS32 testStatus = true; + + + testStatus &= t01(); + testStatus &= tst_psMinimizationAlloc(); + testStatus &= tst_psMinConstrainAlloc(); + if (testStatus == true) { + printf("The LMM minimization tests PASSED.\n"); + } else { + printf("The LMM minimization tests FAILED.\n"); + } + printf("DONE\n"); + fflush(stdout); +} + + Index: /branches/rel-1-1/psLib/test/math/tst_psMinimizePowell.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psMinimizePowell.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psMinimizePowell.c (revision 12167) @@ -0,0 +1,294 @@ +/***************************************************************************** + This routine must ensure that psMinimizePowell() works correctly. + + We test with a NULL and non-NULL paramMask. + + XXX: Must verify the stderr for the NULL parameter tests. + XXX: psMinimizeChi2Powell() is untested. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define N 5 +#define MIN_VALUE 20.0 +#define NUM_PARAMS 10 +#define ERROR_TOLERANCE 0.10 +float expectedParm[NUM_PARAMS]; +psS32 testStatus = true; + +/***************************************************************************** +myFunc(): This routine subtracts the associate value in expectedParm[] from +each parameter and then squares it, then sums that for all parameters, then +adds MIN_VALUE to it. The minimum for this function will be MIN_VALUE, and +will occur when each parameter equals the associated value in expectedParm[]. + +This procedure ignores the coordinates, other than to ensure that they were +passed correctly from psMinimizePowell(). + *****************************************************************************/ +float myFunc(psVector *myParams, + psArray *myCoords) +{ + float sum = 0.0; + float coordData = 0.0; + float expData = 0.0; + psS32 i; + + // + // Simply ensure that the coordinate data was passed correctly. + // + for (i=0;idata[i]))->data.F32[0]; + expData = (float) (i+10); + if (fabs(coordData - expData) > FLT_EPSILON) { + printf("ERROR(1): coordinate data was incorrectly passed to myFunc()\n"); + printf("ERROR(1): was (%f) should be (%f)\n", coordData, expData); + testStatus = false; + } + coordData = ((psVector *) (myCoords->data[i]))->data.F32[1]; + expData = (float) (i+3); + if (fabs(coordData - expData) > FLT_EPSILON) { + printf("ERROR(2): coordinate data was incorrectly passed to myFunc()\n"); + printf("ERROR(2): was (%f) should be (%f)\n", coordData, expData); + testStatus = false; + } + } + + + sum = 0.0; + for (i=0;idata.F32[i] - expectedParm[i]) * (myParams->data.F32[i] - expectedParm[i]); + } + sum = MIN_VALUE + (sum * sum); + + return(sum); +} + + +psS32 t00() +{ + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + psS32 i = 0; + psArray *myCoords; + psVector *myParams; + psVector *myParamMask; + psMinimization *min; + + psTraceSetLevel(".psLib", 0); + /************************************************************************** + *************************************************************************/ + myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + myParamMask = psVectorAlloc(NUM_PARAMS, PS_TYPE_U8); + myParams->n = NUM_PARAMS; + myParamMask->n = NUM_PARAMS; + min = psMinimizationAlloc(100, 0.01); + + myCoords = psArrayAlloc(N); + myCoords->n = N; + for (i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + } + for (i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParamMask->data.U8[i] = 0; + } + + printPositiveTestHeader(stdout, + "psMinimize functions", + "psMinimizePowell()"); + + psMinimizePowell(min, + myParams, + myParamMask, + myCoords, + (psMinimizePowellFunc) myFunc); + + printf("\nThe minimum is %f (expected: %f)\n", min->value, MIN_VALUE); + + for (i=0;idata.F32[i], expectedParm[i]); + + if (fabs(myParams->data.F32[i] - expectedParm[i]) > fabs(ERROR_TOLERANCE * expectedParm[i])) { + printf("ERROR: Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + testStatus = false; + } else { + printf("Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + } + } + + + psFree(myCoords); + psFree(myParams); + psFree(myParamMask); + psFree(min); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + printFooter(stdout, + "psMinimize functions", + "psMinimizePowell()", + testStatus); + + + return (!testStatus); +} + +psS32 t01() +{ + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + psS32 i = 0; + psArray *myCoords; + psVector *myParams; + psMinimization *min; + + psTraceSetLevel(".psLib", 0); + /************************************************************************** + *************************************************************************/ + myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + min = psMinimizationAlloc(100, 0.01); + + myCoords = psArrayAlloc(N); + myCoords->n = N; + for (i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + ((psVector *) (myCoords->data[i]))->n = 2; + } + for (i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParams->n++; + } + + printPositiveTestHeader(stdout, + "psMinimize functions", + "psMinimizePowell()"); + + psMinimizePowell(min, + myParams, + NULL, + myCoords, + (psMinimizePowellFunc) myFunc); + + printf("\nThe minimum is %f (expected: %f)\n", min->value, MIN_VALUE); + + for (i=0;idata.F32[i], expectedParm[i]); + + if (fabs(myParams->data.F32[i] - expectedParm[i]) > fabs(ERROR_TOLERANCE * expectedParm[i])) { + printf("ERROR: Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + testStatus = false; + } else { + printf("Parameter %d: (%.1f), expected was (%.1f)\n", + i, myParams->data.F32[i], expectedParm[i]); + } + } + + + psFree(myCoords); + psFree(myParams); + psFree(min); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + printFooter(stdout, + "psMinimize functions", + "psMinimizePowell()", + testStatus); + + + return (!testStatus); +} + +psS32 t02() +{ + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + psS32 i = 0; + psArray *myCoords; + psVector *myParams; + psVector *myParamMask; + psMinimization *min; + + psTraceSetLevel(".psLib", 0); + /************************************************************************** + *************************************************************************/ + myParams = psVectorAlloc(NUM_PARAMS, PS_TYPE_F32); + myParamMask = psVectorAlloc(NUM_PARAMS, PS_TYPE_U8); + min = psMinimizationAlloc(100, 0.01); + + myCoords = psArrayAlloc(N); + myCoords->n = N; + for (i=0;idata[i] = (psPtr *) psVectorAlloc(2, PS_TYPE_F32); + ((psVector *) (myCoords->data[i]))->data.F32[0] = (float) (i+10); + ((psVector *) (myCoords->data[i]))->data.F32[1] = (float) (i+3); + ((psVector *) (myCoords->data[i]))->n++; + } + for (i=0;idata.F32[i] = 0.0; + myParams->data.F32[i] = (float) i; + myParamMask->data.U8[i] = 0; + myParams->n++; + myParamMask->n++; + } + + printPositiveTestHeader(stdout, + "psMinimize functions", + "psMinimizePowell(): various NULL inputs"); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for null minimize."); + psMinimizePowell(NULL, myParams, myParamMask, myCoords, (psMinimizePowellFunc) myFunc); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for null parameter vector"); + psMinimizePowell(min, NULL, myParamMask, myCoords,(psMinimizePowellFunc) myFunc); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for null coords."); + psMinimizePowell(min, myParams, myParamMask, NULL, (psMinimizePowellFunc) myFunc); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for null function"); + psMinimizePowell(min, myParams, myParamMask, myCoords, NULL); + + psFree(myCoords); + psFree(myParams); + psFree(myParamMask); + psFree(min); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + printFooter(stdout, + "psMinimize functions", + "psMinimizePowell(): various NULL inputs", + testStatus); + + + return (!testStatus); +} + +psS32 main() +{ + psLogSetFormat("HLNM"); + t00(); + t01(); + t02(); +} Index: /branches/rel-1-1/psLib/test/math/tst_psPolyFit1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolyFit1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolyFit1D.c (revision 12167) @@ -0,0 +1,493 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 1D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 1D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + +XXX: Try null stats. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define NUM_DATA 100 +#define POLY_ORDER 5 +#define A 2.0 +#define B 3.0 +#define C 4.0 +#define D 5.0 +#define E 6.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 + +psF32 setData(psF32 x) +{ + return(A + (B * x) + (C * x * x) + (D * x * x * x) + (E * x * x * x * x)); +} + +bool genericTest( + psU32 flags, + psS32 polyOrder, + psS32 numData, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + bool testStatus = true; + psS32 memLeaks = 0; + psPolynomial1D *myPoly = NULL; + psVector *x = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + + printPositiveTestHeader(stdout, "psMinimize functions", "1D Polynomial Fitting Functions"); + + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + + if (flags & TS00_POLY_ORD) { + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, polyOrder); + } + + if (flags & TS00_POLY_CHEB) { + printf(" using chebyshev polynomials\n"); + myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, polyOrder); + } + + if (flags & TS00_X_NULL) { + printf(" using a NULL x vector\n"); + numData = 30; + } + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using a known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = (flags & TS00_X_NULL) ? i : 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i]); + } + if (flags & TS00_X_NULL && flags & TS00_POLY_CHEB) { + // Renormalise the indices + p_psNormalizeVectorRange(xTruth, -1.0, 1.0); + } + psFree(rng); + #if VERBOSE + + for (int i = 0; i < numData; i++) { + printf("Original %d: %f\t%f\n", i, xTruth->data.F64[i], fTruth->data.F64[i]); + } + #endif + + if (flags & TS00_X_F32) { + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1.0, 1.0); + } + #endif + + } + + if (flags & TS00_X_S32) { + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1, 1); + } + #endif + + } + + if (flags & TS00_X_F64) { + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + + #if 0 + + if (flags & TS00_POLY_CHEB) { + p_psNormalizeVectorRange(x, -1.0, 1.0); + } + #endif + + } + + if (flags & TS00_F_NULL) { + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + } + + if (flags & TS00_F_S32) { + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + } + + if (flags & TS00_F_F64) { + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + } + + if (flags & TS00_FERR_NULL) { + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + psPolynomial1D *rc = NULL; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial1D(myPoly, stats, mask, MASK_VALUE, f, fErr, x); + } else { + rc = psVectorFitPolynomial1D(myPoly, mask, MASK_VALUE, f, fErr, x); + } + + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the 1D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the 1D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (VERBOSE) { + for (psS32 i=0;icoeff[i]); + } + } + + psVector *result = psPolynomial1DEvalVector(myPoly, xTruth); + for (psS32 i=0; idata.F64[i]; + psF32 actualData = result->data.F64[i]; + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: %.1f --> %.1f vs %.1f\n", + i, xTruth->data.F64[i], actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: %1.f --> %.1f vs %.1f\n", + i, xTruth->data.F64[i], actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(1); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(f); + psFree(xTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, "psMinimize functions", "1D Polynomial Fitting Functions", testStatus); + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +int main() +{ + psBool testStatus = true; + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial1D", 0); + psTraceSetLevel("VectorFitPolynomial1DOrd", 0); + psTraceSetLevel("VectorFitPolynomial1DCheb", 0); + psTraceSetLevel("vectorFitPolynomial1DCheb", 0); + psTraceSetLevel("vectorFitPolynomial1DChebSlow", 0); + psTraceSetLevel("vectorFitPolynomial1DChebFast", 0); + psTraceSetLevel("psVectorFitPolynomial1D", 0); + psTraceSetLevel("p_psCreateChebyshevPolys", 0); + + printPositiveTestHeader(stdout, "psMinimize functions: 1D Polynomial Fitting Functions", ""); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + // Unallowable vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_S32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_S32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_S32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER, NUM_DATA, true); + + + // + // F32 tests: Chebyshev polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + + + // + // F64 tests: Chebyshev polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_CHEB, POLY_ORDER, NUM_DATA, true); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + + + // + // F32 tests: Chebyshev polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_NULL | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_NULL | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + + + // + // F64 tests: Chebyshev polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_NULL | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F32 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_F_F64 | TS00_POLY_CHEB | TS00_CLIP_FIT, POLY_ORDER, NUM_DATA, false); + + printFooter(stdout, "psMinimize functions: 1D Polynomial Fitting Functions", "", testStatus); +} + Index: /branches/rel-1-1/psLib/test/math/tst_psPolyFit2D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolyFit2D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolyFit2D.c (revision 12167) @@ -0,0 +1,426 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 2D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 2D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define NUM_DATA 100 +#define POLY_ORDER_X 2 +#define POLY_ORDER_Y 3 +#define A 2.0 +#define B 3.0 +#define C 4.0 +#define D 5.0 +#define E 6.0 +#define F 4.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 + +psF32 setData(psF32 x, psF32 y) +{ + return(A + (B * x) + (C * x * x) + (D * y) + (E * y * y) + (F * x * y)); +} + +psS32 genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 numData, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psS32 testStatus = true; + psS32 memLeaks = 0; + psPolynomial2D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + + printPositiveTestHeader(stdout, "psMinimize functions", "2D Polynomial Fitting Functions"); + + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + + if (flags & TS00_POLY_ORD) { + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY); + } + + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using an RNG with a known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i]); + } + psFree(rng); + + if (flags & TS00_X_NULL) { + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + if (flags & TS00_Y_NULL) { + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_F_NULL) { + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_F_S32) { + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + if (flags & TS00_F_F64) { + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_FERR_NULL) { + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + psPolynomial2D *rc = NULL; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial2D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y); + } else { + rc = psVectorFitPolynomial2D(myPoly, mask, MASK_VALUE, f, fErr, x, y); + } + + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the 2D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the 2D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (VERBOSE) { + for (psS32 i=0;icoeff[i][j]); + } + } + } + + psVector *result = psPolynomial2DEvalVector(myPoly, xTruth, yTruth); + for (psS32 i=0 ;idata.F64[i]; + psF64 expectData = fTruth->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(1); + psFree(myPoly); + psFree(mask); + psFree(xTruth); + psFree(yTruth); + psFree(fTruth); + psFree(x); + psFree(y); + psFree(f); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, "psMinimize functions", "2D Polynomial Fitting Functions", testStatus); + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +psS32 main() +{ + psBool testStatus = true; + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial2D", 0); + psTraceSetLevel("VectorFitPolynomial2DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial2D", 0); + + printPositiveTestHeader(stdout, "psMinimize functions: 2D Polynomial Fitting Functions", ""); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, NUM_DATA, false); + + printFooter(stdout, "psMinimize functions: 2D Polynomial Fitting Functions", "", testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psPolyFit3D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolyFit3D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolyFit3D.c (revision 12167) @@ -0,0 +1,479 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 3D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 3D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define NUM_DATA 100 +#define POLY_ORDER_X 2 +#define POLY_ORDER_Y 3 +#define POLY_ORDER_Z 2 +#define A 100.0 +#define B 2.0 +#define C 3.0 +#define D 4.0 +#define E 5.0 +#define F 4.0 +#define H 3.0 +#define J 3.0 +#define K 1.0 +#define L 5.0 +#define ERROR_TOLERANCE 0.10 +#define YERR 10.0 +#define VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 4.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 +#define TS00_Z_NULL 0x01000000 +#define TS00_Z_F32 0x02000000 +#define TS00_Z_F64 0x04000000 +#define TS00_Z_S32 0x08000000 + +psF32 setData(psF32 x, psF32 y, psF32 z) +{ + if (0) { + // Linear case, for testing. + return(A + (B * x) + (D * y) + (H * z)); + } else { + return(A + (B * x) + (C * x * x) + (D * y) + (E * y * y) + (F * x * y) + (H * z) + + (J * z * z) + (K * x * z) + (L * y * z)); + } +} + +psS32 genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 polyOrderZ, + psS32 numData, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psS32 testStatus = true; + psS32 memLeaks = 0; + psPolynomial3D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *z = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + + printPositiveTestHeader(stdout, "psMinimize functions", "3D Polynomial Fitting Functions"); + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *zTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + zTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + zTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i], zTruth->data.F64[i]); + } + psFree(rng); + + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + + if (flags & TS00_POLY_ORD) { + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY, polyOrderZ); + } + + if (flags & TS00_X_NULL) { + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + + if (flags & TS00_Y_NULL) { + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_Z_NULL) { + printf(" using a NULL z vector\n"); + } + + if (flags & TS00_Z_F32) { + printf(" using a psF32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F32); + } + + if (flags & TS00_Z_S32) { + printf(" using a psS32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_S32); + } + + if (flags & TS00_Z_F64) { + printf(" using a psF64 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F64); + } + + + if (flags & TS00_F_NULL) { + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4]*= 2.0; + f->data.F32[numData/2]*= 2.0; + f->data.F32[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TS00_F_S32) { + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4]*= 2.0; + f->data.S32[numData/2]*= 2.0; + f->data.S32[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + if (flags & TS00_F_F64) { + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4]*= 2.0; + f->data.F64[numData/2]*= 2.0; + f->data.F64[3*numData/4]*= 2.0; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TS00_FERR_NULL) { + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + psPolynomial3D *rc = NULL; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial3D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y, z); + } else { + rc = psVectorFitPolynomial3D(myPoly, mask, MASK_VALUE, f, fErr, x, y, z); + } + + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the 3D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the 3D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (VERBOSE) { + for (psS32 i=0;icoeff[i][j][k]); + } + } + } + } + + psVector *result = psPolynomial3DEvalVector(myPoly, xTruth, yTruth, zTruth); + for (psS32 i=0 ;idata.F64[i]; + psF32 actualData = result->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(1); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(y); + psFree(z); + psFree(f); + psFree(xTruth); + psFree(yTruth); + psFree(zTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, "psMinimize functions", "3D Polynomial Fitting Functions", testStatus); + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +psS32 main() +{ + psBool testStatus = true; + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial3D", 0); + psTraceSetLevel("VectorFitPolynomial3DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial3D", 0); + + printPositiveTestHeader(stdout, "psMinimize functions: 3D Polynomial Fitting Functions", ""); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, NUM_DATA, false); + + printFooter(stdout, "psMinimize functions: 3D Polynomial Fitting Functions", "", testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psPolyFit4D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolyFit4D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolyFit4D.c (revision 12167) @@ -0,0 +1,667 @@ +/***************************************************************************** +This routine must ensure that various psLib functions which fit 4D polynomials +to data work correctly. There is a function genericTest() which creates +vectors of data points (x and f), and populates them with the values from an +arbitrary function setData(). It then calls appropriate 4D fitting function. +It then evaluates the polynomial with the coefficients generated above and +determines if they are within an error tolerance of the expected values. + *****************************************************************************/ +#include +#include +#include "pslib.h" +#include "psTest.h" +#define NUM_DATA 200 +#define POLY_ORDER_X 1 +#define POLY_ORDER_Y 1 +#define POLY_ORDER_Z 1 +#define POLY_ORDER_T 1 +#define A 100.0 +#define B 2.0 +#define C 3.0 +#define D 4.0 +#define E 5.0 +#define F 6.0 +#define H 3.0 +#define J 3.0 +#define K 1.0 +#define L 5.0 +#define M 4.0 +#define N 3.0 +#define O 2.0 +#define P 1.0 +#define Q 5.0 +#define ERROR_TOLERANCE 0.05 +#define YERR 0.1 +#define VERBOSE 0 +#define NUM_ITERATIONS 5 +#define CLIP_SIGMA 3.0 +#define OUTLIERS true +#define MASK_VALUE 1 + +#define TS00_F_NULL 0x00000001 +#define TS00_F_F32 0x00000002 +#define TS00_F_F64 0x00000004 +#define TS00_F_S32 0x00000008 +#define TS00_X_NULL 0x00000010 +#define TS00_X_F32 0x00000020 +#define TS00_X_F64 0x00000040 +#define TS00_X_S32 0x00000080 +#define TS00_FERR_NULL 0x00000100 +#define TS00_FERR_F32 0x00000200 +#define TS00_FERR_F64 0x00000400 +#define TS00_FERR_S32 0x00000800 +#define TS00_MASK_NULL 0x00001000 +#define TS00_MASK_U8 0x00002000 +#define TS00_MASK_S32 0x00004000 +#define TS00_POLY_ORD 0x00008000 +#define TS00_POLY_CHEB 0x00010000 +#define TS00_CLIP_FIT 0x00020000 +#define TS00_Y_NULL 0x00100000 +#define TS00_Y_F32 0x00200000 +#define TS00_Y_F64 0x00400000 +#define TS00_Y_S32 0x00800000 +#define TS00_Z_NULL 0x01000000 +#define TS00_Z_F32 0x02000000 +#define TS00_Z_F64 0x04000000 +#define TS00_Z_S32 0x08000000 +#define TS00_T_NULL 0x10000000 +#define TS00_T_F32 0x20000000 +#define TS00_T_F64 0x40000000 +#define TS00_T_S32 0x80000000 + +psF32 setData(psF32 x, psF32 y, psF32 z, psF32 t) +{ + if (0) { + // Linear case, for testing. + return(A + (B * x) + (C * y) + (D * z) + (E * t)); + } else { + #if 0 + return(A + (B * x) + (C * y) + (D * z) + (E * t) + + (F * x * x) + (H * y * y) + (J * z * z) + (K * t * t) + + (L * x * y) + (M * x * z) + (N * x * t) + (O * y * z) + (P * y * t) + (Q * z * t)); + #else + + return A + (B * x) + (C * y) + (D * z) + (E * t) + (F * x * y); + #endif + + } +} + +bool genericTest( + psU32 flags, + psS32 polyOrderX, + psS32 polyOrderY, + psS32 polyOrderZ, + psS32 polyOrderT, + psS32 numData, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + bool testStatus = true; + psS32 memLeaks = 0; + psPolynomial4D *myPoly = NULL; + psVector *x = NULL; + psVector *y = NULL; + psVector *z = NULL; + psVector *t = NULL; + psVector *f = NULL; + psVector *mask = NULL; + psVector *fErr = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + stats->clipSigma = CLIP_SIGMA; + stats->clipIter = NUM_ITERATIONS; + + printPositiveTestHeader(stdout, "psMinimize functions", "4D Polynomial Fitting Functions"); + + psVector *xTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *yTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *zTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *tTruth = psVectorAlloc(numData, PS_TYPE_F64); + psVector *fTruth = psVectorAlloc(numData, PS_TYPE_F64); + xTruth->n = numData; + yTruth->n = numData; + zTruth->n = numData; + tTruth->n = numData; + fTruth->n = numData; + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Using known seed + for (int i = 0; i < numData; i++) { + xTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + yTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + zTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + tTruth->data.F64[i] = 2.0*psRandomUniform(rng) - 1.0; + fTruth->data.F64[i] = setData(xTruth->data.F64[i], yTruth->data.F64[i], + zTruth->data.F64[i], tTruth->data.F64[i]); + } + psFree(rng); + + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TS00_CLIP_FIT) { + printf(" performing a clip-fit\n"); + } else { + printf(" performing a non clip-fit\n"); + } + + if (flags & TS00_POLY_ORD) { + printf(" using ordinary polynomials\n"); + myPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, polyOrderX, polyOrderY, + polyOrderZ, polyOrderT); + + #if 1 + + for (int ix = 0; ix < polyOrderX + 1; ix++) { + for (int iy = 0; iy < polyOrderY + 1; iy++) { + for (int iz = 0; iz < polyOrderZ + 1; iz++) { + for (int it = 0; it < polyOrderT + 1; it++) { + myPoly->mask[ix][iy][iz][it] = 0xff; // Mask it out + } + } + } + } + + // Put these back in + myPoly->mask[0][0][0][0] = 0; // A + myPoly->mask[1][0][0][0] = 0; // B * x + myPoly->mask[0][1][0][0] = 0; // C * y + myPoly->mask[0][0][1][0] = 0; // D * z + myPoly->mask[0][0][0][1] = 0; // E * t + myPoly->mask[1][1][0][0] = 0; // F * xy + #endif + + } + + if (flags & TS00_X_NULL) { + printf(" using a NULL x vector\n"); + } + + if (flags & TS00_X_F32) { + printf(" using a psF32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F32); + } + + if (flags & TS00_X_S32) { + printf(" using a psS32 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_S32); + } + + if (flags & TS00_X_F64) { + printf(" using a psF64 x vector\n"); + x = psVectorCopy(NULL, xTruth, PS_TYPE_F64); + } + + + if (flags & TS00_Y_NULL) { + printf(" using a NULL y vector\n"); + } + + if (flags & TS00_Y_F32) { + printf(" using a psF32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F32); + } + + if (flags & TS00_Y_S32) { + printf(" using a psS32 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_S32); + } + + if (flags & TS00_Y_F64) { + printf(" using a psF64 y vector\n"); + y = psVectorCopy(NULL, yTruth, PS_TYPE_F64); + } + + if (flags & TS00_Z_NULL) { + printf(" using a NULL z vector\n"); + } + + if (flags & TS00_Z_F32) { + printf(" using a psF32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F32); + } + + if (flags & TS00_Z_S32) { + printf(" using a psS32 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_S32); + } + + if (flags & TS00_Z_F64) { + printf(" using a psF64 z vector\n"); + z = psVectorCopy(NULL, zTruth, PS_TYPE_F64); + } + + if (flags & TS00_T_NULL) { + printf(" using a NULL t vector\n"); + } + + if (flags & TS00_T_F32) { + printf(" using a psF32 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_F32); + } + + if (flags & TS00_T_S32) { + printf(" using a psS32 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_S32); + } + + if (flags & TS00_T_F64) { + printf(" using a psF64 t vector\n"); + t = psVectorCopy(NULL, tTruth, PS_TYPE_F64); + } + + + if (flags & TS00_F_NULL) { + printf(" using a NULL f vector\n"); + } + + if (flags & TS00_F_F32) { + printf(" using a psF32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F32[numData/4] *= 2.0; + f->data.F32[numData/2] *= 2.0; + f->data.F32[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_F_S32) { + printf(" using a psS32 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_S32); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.S32[numData/4] *= 2.0; + f->data.S32[numData/2] *= 2.0; + f->data.S32[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_F_F64) { + printf(" using a psF64 f vector\n"); + f = psVectorCopy(NULL, fTruth, PS_TYPE_F64); + // Set a few outliers in the data. + if (OUTLIERS && (flags & TS00_CLIP_FIT)) { + f->data.F64[numData/4] *= 2.0; + f->data.F64[numData/2] *= 2.0; + f->data.F64[3*numData/4] *= 2.0; + } + } + + if (flags & TS00_FERR_NULL) { + printf(" using a NULL fErr vector\n"); + } + + if (flags & TS00_FERR_F32) { + printf(" using a psF32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F32); + fErr->n = numData; + for (psS32 i=0;idata.F32[i] = YERR; + } + } + + if (flags & TS00_FERR_S32) { + printf(" using a psS32 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_S32); + fErr->n = numData; + for (psS32 i=0;idata.S32[i] = (psS32) YERR; + } + } + + if (flags & TS00_FERR_F64) { + printf(" using a psF64 fErr vector\n"); + fErr = psVectorAlloc(numData, PS_TYPE_F64); + fErr->n = numData; + for (psS32 i=0;idata.F64[i] = YERR; + } + } + + if (flags & TS00_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TS00_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + mask->n = numData; + for (psS32 i=0;idata.U8[i] = 0; + } + } + + if (flags & TS00_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + mask->n = numData; + for (psS32 i=0;idata.S32[i] = 0; + } + } + + psPolynomial4D *rc = NULL; + if (flags & TS00_CLIP_FIT) { + rc = psVectorClipFitPolynomial4D(myPoly, stats, mask, MASK_VALUE, f, fErr, x, y, z, t); + } else { + rc = psVectorFitPolynomial4D(myPoly, mask, MASK_VALUE, f, fErr, x, y, z, t); + } + + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the 4D polynomial fitting function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the 4D polynomial fitting function returned non-NULL.\n"); + testStatus = false; + } + + if (VERBOSE) { + for (psS32 i=0;icoeff[i][j][k][l]); + } + } + } + } + } + + psVector *result = psPolynomial4DEvalVector(myPoly, xTruth, yTruth, zTruth, tTruth); + for (int i=0;idata.F64[i]; + psF32 actualData = result->data.F64[i]; + + if (fabs(actualData-expectData) > fabs(ERROR_TOLERANCE * expectData)) { + printf("TEST ERROR: Fitted data %d: (%f), expected was (%f)\n", + i, actualData, expectData); + testStatus = false; + } else { + if (VERBOSE) { + printf("GOOD: Fitted data %d: (%.1f), expected was (%.1f)\n", + i, actualData, expectData); + } + } + } + psFree(result); + } + + psMemCheckCorruption(1); + psFree(myPoly); + psFree(mask); + psFree(x); + psFree(y); + psFree(z); + psFree(t); + psFree(f); + psFree(xTruth); + psFree(yTruth); + psFree(zTruth); + psFree(tTruth); + psFree(fTruth); + psFree(fErr); + psFree(stats); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, "psMinimize functions", "4D Polynomial Fitting Functions", testStatus); + + return (testStatus); +} + +/***************************************************************************** +We test a variety of polynomial fitting routines, types, and polynomial types +here: + F32 tests: Ordinary polys, non-clip fit + F64 tests: Ordinary polys, non-clip fit + F32 tests: Chebyshev polys, non-clip fit + F64 tests: Chebyshev polys, non-clip fit + F32 tests: Ordinary polys, clip fit + F64 tests: Ordinary polys, clip fit + F32 tests: Chebyshev polys, clip fit + F64 tests: Chebyshev polys, clip fit + *****************************************************************************/ +int main() +{ + psBool testStatus = true; + psLogSetFormat("HLNM"); + psTraceSetLevel(".", 0); + psTraceSetLevel("psVectorClipFitPolynomial4D", 0); + psTraceSetLevel("VectorFitPolynomial4DOrd", 0); + psTraceSetLevel("psVectorFitPolynomial4D", 0); + + printPositiveTestHeader(stdout, "psMinimize functions: 4D Polynomial Fitting Functions", ""); + + // + // F32 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true); + + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_NULL + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_NULL | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, non-clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_NULL + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_NULL | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_NULL | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD, POLY_ORDER_X, POLY_ORDER_Y, POLY_ORDER_Z, + POLY_ORDER_T, NUM_DATA, false); + + // + // F32 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_NULL | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_NULL | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_NULL + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_NULL | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F32 | TS00_X_F32 | TS00_Y_F32 | TS00_Z_F32 + | TS00_T_F32 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + + // + // F64 tests: Ordinary polys, clip fit + // + // All Vectors non-NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true); + // Some Vectors NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_NULL | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, true); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_NULL | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_NULL | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_NULL + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_NULL | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + // F-vector NULL + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_NULL | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_NULL | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + // Mismatch vector types + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F32 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F32 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F32 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F32 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F32 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_U8 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F32 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + testStatus &= genericTest(TS00_MASK_S32 | TS00_FERR_F64 | TS00_X_F64 | TS00_Y_F64 | TS00_Z_F64 + | TS00_T_F64 | TS00_F_F64 | TS00_POLY_ORD | TS00_CLIP_FIT, POLY_ORDER_X, POLY_ORDER_Y, + POLY_ORDER_Z, POLY_ORDER_T, NUM_DATA, false); + + printf("Status: %x\n", testStatus); + + printFooter(stdout, "psMinimize functions: 4D Polynomial Fitting Functions", "", testStatus); +} + Index: /branches/rel-1-1/psLib/test/math/tst_psPolynomial.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolynomial.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolynomial.c (revision 12167) @@ -0,0 +1,353 @@ +/** tst_Func00.c +* +* This routine must ensure that the psPolynomial structures are +* allocated and deallocated by the psPolynomialXXXlloc() procedures. +* It also calls the various psPolynomialXXXEval() procedures. +* +* The F32 and F64 polynomials are tested for all orders (1 - 4) and for +* both ordinary and chebyshev polynomials. +* +* NOTE: This test code requries the stdout file to verify that the results +* are good. +* +* XXX: Modify these tests so that polynomials with a variety of different +* orders are created. +* +* XXX: Compare to FLT_EPSILON +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-02 21:05:51 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +*****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" + +// Defines +#define ORDER 3 + +static psS32 testPolynomial1DAlloc(void); +static psS32 testPolynomial2DAlloc(void); +static psS32 testPolynomial3DAlloc(void); +static psS32 testPolynomial4DAlloc(void); + +testDescription tests[] = { + {testPolynomial1DAlloc,578,"psPolynomial1DAlloc",0,false}, + {testPolynomial2DAlloc,578,"psPolynomial2DAlloc",0,false}, + {testPolynomial3DAlloc,578,"psPolynomial3DAlloc",0,false}, + {testPolynomial4DAlloc,578,"psPolynomial4DAlloc",0,false}, + {NULL} + }; + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return !runTestSuite(stderr,"psPolynomialXD", tests, argc, argv); +} + + +// This test will allocate a 1D polynomial and verify the structure allocated +psS32 testPolynomial1DAlloc(void) +{ + psPolynomial1D* my1DPoly = NULL; + + // Allocate polynomial + my1DPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, ORDER); + // Verify structure allocated + if(my1DPoly == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 1; + } + // Verify polynomial structure members set properly + if(my1DPoly->nX != ORDER) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my1DPoly->nX, ORDER); + return 2; + } + if(my1DPoly->type != PS_POLYNOMIAL_ORD) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + my1DPoly->type, PS_POLYNOMIAL_ORD); + return 3; + } + for(psS32 i = 0; i < ORDER+1; i++) { + if(my1DPoly->coeff[i] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"Coeff[%d] %lg not as expected %lg", + i, my1DPoly->coeff[i], 0.0); + return 4; + } + if(my1DPoly->coeffErr[i] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"CoeffErr[%d] %lg not as expected %lg", + i, my1DPoly->coeffErr[i], 0.0); + return 5; + } + if(my1DPoly->mask[i] != 0) { + psError(PS_ERR_UNKNOWN,true,"Mask[%d] %d not as expected %d", + i, my1DPoly->mask[i], 0); + return 6; + } + } + psFree(my1DPoly); + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, -1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 7; + } + } + + return 0; +} + +// This test will allocate a 2D polynomial and verify the structure allocated +psS32 testPolynomial2DAlloc(void) +{ + psPolynomial2D* my2DPoly = NULL; + + // Allocate polynomial + my2DPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, ORDER,ORDER+1); + // Verify structure allocated + if(my2DPoly == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 1; + } + // Verify polynomial structure members set properly + if(my2DPoly->nX != ORDER) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my2DPoly->nX, ORDER); + return 2; + } + // Verify polynomial structure members set properly + if(my2DPoly->nY != ORDER+1) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my2DPoly->nY, ORDER+1); + return 3; + } + if(my2DPoly->type != PS_POLYNOMIAL_ORD) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + my2DPoly->type, PS_POLYNOMIAL_ORD); + return 4; + } + + for(psS32 i = 0; i < ORDER+1; i++) { + for(psS32 j = 0; j < ORDER+2; j++) { + if(fabs(my2DPoly->coeff[i][j]) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN,true,"Coeff[%d][%d] %lg not as expected %lg", + i, j, my2DPoly->coeff[i][j], 0.0); + return 5; + } + if(my2DPoly->coeffErr[i][j] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"CoeffErr[%d][%d] %lg not as expected %lg", + i, j, my2DPoly->coeffErr[i][j], 0.0); + return 6; + } + if(my2DPoly->mask[i][j] != 0) { + psError(PS_ERR_UNKNOWN,true,"Mask[%d][%d] %d not as expected %d", + i, j, my2DPoly->mask[i][j], 0); + return 7; + } + } + } + psFree(my2DPoly); + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, -1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 8; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 1, -1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 9; + } + } + return 0; +} + +// This test will allocate a 3D polynomial and verify the structure allocated +psS32 testPolynomial3DAlloc(void) +{ + psPolynomial3D* my3DPoly = NULL; + + // Allocate polynomial + my3DPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, ORDER, ORDER+1, ORDER+2); + // Verify structure allocated + if(my3DPoly == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 1; + } + // Verify polynomial structure members set properly + if(my3DPoly->nX != ORDER) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my3DPoly->nX, ORDER); + return 2; + } + // Verify polynomial structure members set properly + if(my3DPoly->nY != ORDER+1) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my3DPoly->nY, ORDER+1); + return 3; + } + // Verify polynomial structure members set properly + if(my3DPoly->nZ != ORDER+2) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my3DPoly->nZ, ORDER+2); + return 4; + } + if(my3DPoly->type != PS_POLYNOMIAL_ORD) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + my3DPoly->type, PS_POLYNOMIAL_ORD); + return 5; + } + for(psS32 i = 0; i < ORDER+1; i++) { + for(psS32 j = 0; j < ORDER+2; j++) { + for(psS32 k = 0; k < ORDER+3; k++) { + if(my3DPoly->coeff[i][j][k] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"Coeff[%d][%d][%d] %lg not as expected %lg", + i, j, k, my3DPoly->coeff[i][j][k], 0.0); + return 6; + } + if(my3DPoly->coeffErr[i][j][k] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"CoeffErr[%d][%d][%d] %lg not as expected %lg", + i, j, k, my3DPoly->coeffErr[i][j][k], 0.0); + return 7; + } + if(my3DPoly->mask[i][j][k] != 0) { + psError(PS_ERR_UNKNOWN,true,"Mask[%d][%d] %d not as expected %d", + i, j, k, my3DPoly->mask[i][j][k], 0); + return 8; + } + } + } + } + psFree(my3DPoly); + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, -1, 1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 9; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 1, -1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 10; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 1, 1, -1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 11; + } + } + + return 0; +} + +// This test will allocate a 4D polynomial and verify the structure allocated +psS32 testPolynomial4DAlloc(void) +{ + psPolynomial4D* my4DPoly = NULL; + + // Allocate polynomial + my4DPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, ORDER,ORDER+1,ORDER+2,ORDER+3); + // Verify structure allocated + if(my4DPoly == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned NULL not expected"); + return 1; + } + // Verify polynomial structure members set properly + if(my4DPoly->nX != ORDER) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my4DPoly->nX, ORDER); + return 2; + } + // Verify polynomial structure members set properly + if(my4DPoly->nY != ORDER+1) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my4DPoly->nX, ORDER+1); + return 3; + } + // Verify polynomial structure members set properly + if(my4DPoly->nZ != ORDER+2) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my4DPoly->nZ, ORDER+2); + return 4; + } + // Verify polynomial structure members set properly + if(my4DPoly->nT != ORDER+3) { + psError(PS_ERR_UNKNOWN,true,"Number of terms %d not as expected %d", + my4DPoly->nT, ORDER+3); + return 5; + } + if(my4DPoly->type != PS_POLYNOMIAL_ORD) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d", + my4DPoly->type, PS_POLYNOMIAL_ORD); + return 6; + } + for(psS32 i = 0; i < ORDER+1; i++) { + for(psS32 j = 0; j < ORDER+2; j++) { + for(psS32 k = 0; k < ORDER+3; k++) { + for(psS32 l = 0; l < ORDER+4; l++) { + if(my4DPoly->coeff[i][j][k][l] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"Coeff[%d][%d][%d][%d] %lg not as expected %lg", + i, j, k, l, my4DPoly->coeff[i][j][k][l], 0.0); + return 7; + } + if(my4DPoly->coeffErr[i][j][k][l] != 0.0) { + psError(PS_ERR_UNKNOWN,true,"CoeffErr[%d][%d][%d][l] %lg not as expected %lg", + i, j, k, l, my4DPoly->coeffErr[i][j][k][l], 0.0); + return 8; + } + if(my4DPoly->mask[i][j][k][l] != 0) { + psError(PS_ERR_UNKNOWN,true,"Mask[%d][%d][%d][%d] %d not as expected %d", + i, j, k, l, my4DPoly->mask[i][j][k][l], 0); + return 9; + } + } + } + } + } + psFree(my4DPoly); + + if (0) { + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, -1, 1, 1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 10; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, -1, 1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 11; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, 1, -1, 1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 12; + } + // Attempt to allocate with negative order + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error msg for negative terms"); + if(psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, 1, 1, -1) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned structure but expected NULL"); + return 13; + } + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval1D.c (revision 12167) @@ -0,0 +1,197 @@ +/** tst_psFunc08.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-24 23:43:15 $ +* +* XXX: Probably should test single- and multi-dimensional polynomials in +* which one diminsion is constant (n == 1). +* +* XXX: define ORDERS, not TERMS +* +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +static psS32 testPoly1DEval(void); +static psS32 testPoly1DEvalVector(void); + +testDescription tests[] = { + {testPoly1DEval,000,"psPolynomial1DEval",0,false}, + {testPoly1DEvalVector,000,"psPolynomial1DEvalVector",0,false}, + {NULL} + }; + +psF32 poly1DCoeff[TERMS] = { -4.3, 2.3, -3.2, 1.9}; +psF64 Dpoly1DCoeff[TERMS] = { -4.3, 2.3, -3.2, 1.9}; +psF32 poly1DMask[TERMS] = { 0, 0, 1, 0 }; + +psF32 poly1DXValue[TESTPOINTS] = { 2.550000, -9.8000, 0.00134, -12.2500, 0.000}; +psF64 Dpoly1DXValue[TESTPOINTS] = { 2.550000, -9.8000, 0.00134, -12.2500, 0.000}; +psF32 poly1DXResult[TESTPOINTS] = {33.069613, -1815.1048, -4.296918, -3525.1797, -4.3000}; +psF64 Dpoly1DXResult[TESTPOINTS] = {33.069613, -1815.1048, -4.296918, -3525.1797, -4.3000}; + +psF32 poly1DXChebValue[TESTPOINTS] = { -0.99, -0.33, 0.125, 0.564, 0.875}; +psF64 Dpoly1DXChebValue[TESTPOINTS] = { -0.99, -0.33, 0.125, 0.564, 0.875}; +psF32 poly1DXChebResult[TESTPOINTS] = { -1.401196, 1.016252, 0.257813, 0.089625, 1.429688}; +psF64 Dpoly1DXChebResult[TESTPOINTS] = { -1.401196, 1.016252, 0.257813, 0.089625, 1.429688}; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return !runTestSuite(stderr,"psPolynomialXDEval", tests, argc, argv); +} + +// This test will verify operation of 1D polynomial evaluation +psS32 testPoly1DEval(void) +{ + psF64 result; + psF64 resultCheb; + + // Allocate polynomial structure + psPolynomial1D* polyOrd = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, TERMS-1); + psPolynomial1D* polyCheb = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + polyOrd->coeff[i] = poly1DCoeff[i]; + polyOrd->mask[i] = poly1DMask[i]; + polyCheb->coeff[i] = 1.0; + polyCheb->mask[i] = poly1DMask[i]; + } + // Evaluate test points and verify results + for(psS32 i = 0; i < TESTPOINTS; i++) { + result = psPolynomial1DEval(polyOrd,poly1DXValue[i]); + if(fabs(poly1DXResult[i]-result) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Evaluated value %g not as expected %g", + result, poly1DXResult[i]); + return i; + } + resultCheb = psPolynomial1DEval(polyCheb,poly1DXChebValue[i]); + if(fabs(poly1DXChebResult[i]-resultCheb) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Evaluated Chebyshev value %lg not as expected %lg", + resultCheb, poly1DXChebResult[i]); + return 5*i; + } + } + psFree(polyOrd); + psFree(polyCheb); + + // Allocate polynomial with invalid type + polyOrd = psPolynomial1DAlloc(99, TERMS-1); + // Attempt to evaluation invalid polynomial type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid type"); + result = psPolynomial1DEval(polyOrd,0.0); + if ( !isnan(result) ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid polynomial type"); + return 20; + } + psFree(polyOrd); + + return 0; +} + + +psS32 testPoly1DEvalVector(void) +{ + // Allocate polynomial + psPolynomial1D* polyOrd = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, TERMS-1); + psPolynomial1D* polyCheb = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + polyOrd->coeff[i] = poly1DCoeff[i]; + polyOrd->mask[i] = poly1DMask[i]; + polyCheb->coeff[i] = 1.0; + polyCheb->mask[i] = poly1DMask[i]; + } + + // Create input vectors + psVector* inputOrd = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputCheb = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) { + inputOrd->data.F64[i] = poly1DXValue[i]; + inputCheb->data.F64[i] = poly1DXChebValue[i]; + inputOrd->n++; + inputCheb->n++; + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial1DEvalVector(polyOrd, inputOrd); + if(outputOrd == NULL) { + psError(PS_ERR_UNKNOWN,true,"Unexpected return of NULL."); + return 1; + } + if(outputOrd->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"Output vector of type %d expected %d", + outputOrd->type.type, PS_TYPE_F64); + return 2; + } + psVector* outputCheb = psPolynomial1DEvalVector(polyCheb, inputCheb); + if(outputCheb == NULL) { + psError(PS_ERR_UNKNOWN,true,"Unexpected return of NULL."); + return 1; + } + if(outputCheb->type.type != PS_TYPE_F64) { + psError(PS_ERR_UNKNOWN,true,"Output vector of type %d expected %d", + outputCheb->type.type, PS_TYPE_F64); + return 2; + } + + // Verify the results + for(psS32 i = 0; i < TESTPOINTS; i++) { + if(fabs(poly1DXResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Result[%d] %lg not equal to expected %lg", + i, outputOrd->data.F64[i], poly1DXResult[i]); + return i*5; + } + if(fabs(poly1DXChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"ResultCheb[%d] %lg not equal to expected %lg", + i, outputCheb->data.F64[i], poly1DXChebResult[i]); + return i*10; + } + } + + // Attempt to invoke function with null polynomial + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL polynomial"); + if(psPolynomial1DEvalVector(NULL, inputOrd) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Return of NULL expected for NULL polynomial"); + return 60; + } + + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial1DEvalVector(polyOrd,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Return of NULL expected for NULL input vector"); + return 61; + } + + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrd->type.type = PS_TYPE_U8; + if(psPolynomial1DEvalVector(polyOrd,inputOrd) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Return NULL expected for non-F64 input vector"); + return 62; + } + inputOrd->type.type = PS_TYPE_F64; + + psFree(inputOrd); + psFree(inputCheb); + psFree(outputOrd); + psFree(outputCheb); + psFree(polyOrd); + psFree(polyCheb); + + return 0; +} Index: /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval2D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval2D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval2D.c (revision 12167) @@ -0,0 +1,247 @@ +/** tst_psFunc09.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-24 23:43:15 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +static psS32 testPoly2DEval(void); +static psS32 testPoly2DEvalVector(void); + +testDescription tests[] = { + {testPoly2DEval,583,"psPolynomial2DEval",true,false}, + {testPoly2DEvalVector,000,"psPolynomial2DEvalVector",true,false}, + {NULL} + }; + +psF32 poly2DCoeff[TERMS][TERMS] = { { -4.3, 2.3, -3.2, 1.9}, + { 1.2, 0.7, -0.3, 1.3}, + { 0.4, -2.9, 0.8, -3.1}, + { -1.1, 2.1, 1.9, 0.6} + }; +psF64 Dpoly2DCoeff[TERMS][TERMS] = { { -4.3, 2.3, -3.2, 1.9}, + { 1.2, 0.7, -0.3, 1.3}, + { 0.4, -2.9, 0.8, -3.1}, + { -1.1, 2.1, 1.9, 0.6} + }; +psF32 poly2DMask[TERMS][TERMS] = { { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }; + +psF32 poly2DXYValue[TESTPOINTS][2] = { { 1.40, 0.55}, + { -0.55, 1.40}, + { 0.00, 2.34}, + { -0.88, 0.00}, + { 3.45, -0.78} + }; +psF32 Dpoly2DXYValue[TESTPOINTS][2] = { { 1.40, 0.55}, + { -0.55, 1.40}, + { 0.00, 2.34}, + { -0.88, 0.00}, + { 3.45, -0.78} + }; +psF32 poly2DResult[TESTPOINTS] = { -3.415938, -14.765687, -16.43992, -4.606381, -22.650702 }; +psF64 Dpoly2DResult[TESTPOINTS] = { -3.415938, -14.765687, -16.43992, -4.606381, -22.650702 }; + +psF32 poly2DXYChebValue[TESTPOINTS][2] = { { 0.500, 0.500}, + { 0.000, 0.250}, + { -0.250, 0.000}, + { 0.990, 0.150}, + { 0.333, -0.666} + }; +psF32 Dpoly2DXYChebValue[TESTPOINTS][2] = { { 0.500, 0.500}, + { 0.000, 0.250}, + { -0.250, 0.000}, + { 0.990, 0.150}, + { 0.333, -0.666} + }; +psF32 poly2DChebResult[TESTPOINTS] = { 0.750000, 1.687500, 0.625000, -0.113040, 0.386786 }; +psF32 Dpoly2DChebResult[TESTPOINTS] = { 0.750000, 1.687500, 0.625000, -0.113040, 0.386786 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return !runTestSuite(stderr,"psPolynomialXDEval", tests, argc, argv); +} + +// This test will verify operation of 1D polynomial evaluation +psS32 testPoly2DEval(void) +{ + psF64 result; + psF64 resultCheb; + psBool testStatus = true; + + // Allocate polynomial structure + psPolynomial2D* polyOrd = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1); + psPolynomial2D* polyCheb = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + polyOrd->coeff[i][j] = poly2DCoeff[i][j]; + polyOrd->mask[i][j] = poly2DMask[i][j]; + polyCheb->coeff[i][j] = 1.0; + polyCheb->mask[i][j] = poly2DMask[i][j]; + } + } + // Evaluate test points and verify results + for(psS32 i = 0; i < TESTPOINTS; i++) { + result = psPolynomial2DEval(polyOrd,Dpoly2DXYValue[i][0],Dpoly2DXYValue[i][1]); + if(fabs(Dpoly2DResult[i]-result) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated value %f, should be %f\n", result, Dpoly2DResult[i]); + testStatus = false; + } + resultCheb = psPolynomial2DEval(polyCheb,Dpoly2DXYChebValue[i][0],Dpoly2DXYChebValue[i][1]); + if(fabs(Dpoly2DChebResult[i]-resultCheb) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated value %f, should be %f\n", resultCheb, Dpoly2DChebResult[i]); + testStatus = false; + } + } + psFree(polyOrd); + psFree(polyCheb); + + // Allocate polynomial with invalid type + polyOrd = psPolynomial2DAlloc(99, TERMS-1, TERMS-1); + // Attempt to evaluation invalid polynomial type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid type"); + result = psPolynomial2DEval(polyOrd,0.0, 0.0); + if ( !isnan(result) ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN for invalid polynomial type"); + testStatus = false; + } + psFree(polyOrd); + + return(testStatus); +} + +psS32 testPoly2DEvalVector(void) +{ + psBool testStatus = true; + // Allocate polynomial + psPolynomial2D* polyOrd = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1); + psPolynomial2D* polyCheb = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + polyOrd->coeff[i][j] = poly2DCoeff[i][j]; + polyOrd->mask[i][j] = poly2DMask[i][j]; + polyCheb->coeff[i][j] = 1.0; + polyCheb->mask[i][j] = poly2DMask[i][j]; + } + } + + // Create input vectors + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) { + inputOrdX->data.F64[i] = poly2DXYValue[i][0]; + inputOrdY->data.F64[i] = poly2DXYValue[i][1]; + inputChebX->data.F64[i] = poly2DXYChebValue[i][0]; + inputChebY->data.F64[i] = poly2DXYChebValue[i][1]; + inputOrdX->n++; + inputOrdY->n++; + inputChebX->n++; + inputChebY->n++; + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial2DEvalVector(polyOrd, inputOrdX, inputOrdY); + if(outputOrd == NULL) { + printf("TEST ERROR: Unexpected return of NULL.\n"); + testStatus = false; + } + if(outputOrd->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d\n", outputOrd->type.type, PS_TYPE_F64); + testStatus = false; + } + psVector* outputCheb = psPolynomial2DEvalVector(polyCheb, inputChebX, inputChebY); + if(outputCheb == NULL) { + printf("TEST ERROR: Unexpected return of NULL.\n"); + testStatus = false; + } + if(outputCheb->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d.\n", outputCheb->type.type, PS_TYPE_F64); + testStatus = false; + } + + // Verify the results + for(psS32 i = 0; i < TESTPOINTS; i++) { + if(fabs(poly2DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: Result[%d] %lg not equal to expected %lg.\n", + i, outputOrd->data.F64[i], poly2DResult[i]); + testStatus = false; + } + if(fabs(poly2DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg.\n", + i, outputCheb->data.F64[i], poly2DChebResult[i]); + testStatus = false; + } + } + + // Attempt to invoke function with null polynomial + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL polynomial"); + if(psPolynomial2DEvalVector(NULL, inputOrdX, inputOrdY) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL polynomial.\n"); + testStatus = false; + } + + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial2DEvalVector(polyOrd,NULL,inputOrdY) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector.\n"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial2DEvalVector(polyOrd,inputOrdX,NULL) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector.\n"); + testStatus = false; + } + + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdX->type.type = PS_TYPE_U8; + if(psPolynomial2DEvalVector(polyOrd,inputOrdX, inputOrdY) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector.\n"); + testStatus = false; + } + inputOrdX->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdY->type.type = PS_TYPE_U8; + if(psPolynomial2DEvalVector(polyOrd,inputOrdX, inputOrdY) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector.\n"); + testStatus = false; + } + inputOrdY->type.type = PS_TYPE_F64; + + psFree(inputOrdX); + psFree(inputOrdY); + psFree(inputChebX); + psFree(inputChebY); + psFree(outputOrd); + psFree(outputCheb); + psFree(polyOrd); + psFree(polyCheb); + + return(testStatus); +} + Index: /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval3D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval3D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval3D.c (revision 12167) @@ -0,0 +1,330 @@ +/** tst_psFunc10.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-24 23:43:15 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +static psS32 testPoly3DEval(void); +static psS32 testPoly3DEvalVector(void); + +testDescription tests[] = { + {testPoly3DEval,583,"psPolynomial3DEval",true,false}, + {testPoly3DEvalVector,000,"psPolynomial3DEvalVector",true,false}, + {NULL} + }; + +psF32 poly3DCoeff[TERMS][TERMS][TERMS] = { { { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }; +psF64 Dpoly3DCoeff[TERMS][TERMS][TERMS] = { { { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }; + + +psF32 poly3DMask[TERMS][TERMS][TERMS] = { { { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + }; + +psF32 poly3DXYZValue[TESTPOINTS][3] = { { 0.450, -0.780, 0.500}, + { 0.297, 0.153, -0.354}, + { 0.000, 0.153, -0.354}, + { 0.297, 0.000, -0.354}, + { 0.297, 0.153, 0.000} + }; +psF64 Dpoly3DXYZValue[TESTPOINTS][3] = { { 0.450, -0.780, 0.500}, + { 0.297, 0.153, -0.354}, + { 0.000, 0.153, -0.354}, + { 0.297, 0.000, -0.354}, + { 0.297, 0.153, 0.000} + }; +psF32 poly3DResult[TESTPOINTS] = { -1.298691, -2.011591, -1.359247, -2.548266, -1.139072}; +psF64 Dpoly3DResult[TESTPOINTS] = { -1.298691, -2.011591, -1.359247, -2.548266, -1.139072}; + + +psF32 poly3DXYZChebValue[TESTPOINTS][3] = { { 0.000, 0.250, -0.250}, + { -0.250, 0.000, 0.250}, + { 0.250, -0.250, 0.000}, + { 0.100, -0.300, -0.400}, + { 0.990, -0.010, 0.500} + }; +psF64 Dpoly3DXYZChebValue[TESTPOINTS][3] = { { 0.000, 0.250, -0.250}, + { -0.250, 0.000, 0.250}, + { 0.250, -0.250, 0.000}, + { 0.100, -0.300, -0.400}, + { 0.990, -0.010, 0.500} + }; +psF32 poly3DChebResult[TESTPOINTS] = { 1.230469, 1.687500, 0.187500, -1.452707, 2.032344 }; +psF64 Dpoly3DChebResult[TESTPOINTS] = { 1.230469, 1.687500, 0.187500, -1.452707, 2.032344 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return !runTestSuite(stderr,"psPolynomialXDEval", tests, argc, argv); +} + +// This test will verify operation of 1D polynomial evaluation +psS32 testPoly3DEval(void) +{ + psF64 result; + psF64 resultCheb; + psBool testStatus = true; + + // Allocate polynomial structure + psPolynomial3D* polyOrd = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1); + psPolynomial3D* polyCheb = psPolynomial3DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyOrd->coeff[i][j][k] = Dpoly3DCoeff[i][j][k]; + polyOrd->mask[i][j][k] = poly3DMask[i][j][k]; + polyCheb->coeff[i][j][k] = 1.0; + polyCheb->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + // Evaluate test points and verify results + for(psS32 i = 0; i < TESTPOINTS; i++) { + result = psPolynomial3DEval(polyOrd,Dpoly3DXYZValue[i][0],Dpoly3DXYZValue[i][1], + Dpoly3DXYZValue[i][2]); + if(fabs(Dpoly3DResult[i]-result) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated value %lg not as expected %lg.\n", + result, Dpoly3DResult[i]); + testStatus = false; + } + resultCheb = psPolynomial3DEval(polyCheb,Dpoly3DXYZChebValue[i][0],Dpoly3DXYZChebValue[i][1], + Dpoly3DXYZChebValue[i][2]); + if(fabs(Dpoly3DChebResult[i]-resultCheb) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated Chebyshev value %lg not as expected %lg.\n", + resultCheb, Dpoly3DChebResult[i]); + testStatus = false; + } + } + psFree(polyOrd); + psFree(polyCheb); + + // Allocate polynomial with invalid type + polyOrd = psPolynomial3DAlloc(99, TERMS-1, TERMS-1, TERMS-1); + // Attempt to evaluation invalid polynomial type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid type"); + result = psPolynomial3DEval(polyOrd,0.0, 0.0, 0.0); + if ( !isnan(result) ) { + printf("TEST ERROR: Did not return NAN for invalid polynomial type.\n"); + testStatus = false; + } + psFree(polyOrd); + + return(testStatus); +} + +psS32 testPoly3DEvalVector(void) +{ + psBool testStatus = true; + // Allocate polynomial + psPolynomial3D* polyOrd = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1); + psPolynomial3D* polyCheb = psPolynomial3DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + polyOrd->coeff[i][j][k] = Dpoly3DCoeff[i][j][k]; + polyOrd->mask[i][j][k] = poly3DMask[i][j][k]; + polyCheb->coeff[i][j][k] = 1.0; + polyCheb->mask[i][j][k] = poly3DMask[i][j][k]; + } + } + } + + // Create input vectors + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) { + inputOrdX->data.F64[i] = Dpoly3DXYZValue[i][0]; + inputOrdY->data.F64[i] = Dpoly3DXYZValue[i][1]; + inputOrdZ->data.F64[i] = Dpoly3DXYZValue[i][2]; + inputChebX->data.F64[i] = Dpoly3DXYZChebValue[i][0]; + inputChebY->data.F64[i] = Dpoly3DXYZChebValue[i][1]; + inputChebZ->data.F64[i] = Dpoly3DXYZChebValue[i][2]; + inputOrdX->n++; + inputOrdY->n++; + inputOrdZ->n++; + inputChebX->n++; + inputChebY->n++; + inputChebZ->n++; + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ); + if(outputOrd == NULL) { + printf("TEST ERROR: Unexpected return of NULL.\n"); + testStatus = false; + } + if(outputOrd->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d.\n", + outputOrd->type.type, PS_TYPE_F64); + testStatus = false; + } + psVector* outputCheb = psPolynomial3DEvalVector(polyCheb,inputChebX,inputChebY,inputChebZ); + if(outputCheb == NULL) { + printf("TEST ERROR: Unexpected return of NULL.\n"); + testStatus = false; + } + if(outputCheb->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d.\n", + outputCheb->type.type, PS_TYPE_F64); + testStatus = false; + } + + // Verify the results + for(psS32 i = 0; i < TESTPOINTS; i++) { + if(fabs(Dpoly3DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: Result[%d] %lg not equal to expected %lg.\n", + i, outputOrd->data.F64[i], Dpoly3DResult[i]); + testStatus = false; + } + if(fabs(Dpoly3DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg.\n", + i, outputCheb->data.F64[i], Dpoly3DChebResult[i]); + testStatus = false; + } + } + + // Attempt to invoke function with null polynomial + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL polynomial"); + if(psPolynomial3DEvalVector(NULL,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL polynomial.\n"); + testStatus = false; + } + + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial3DEvalVector(polyOrd,NULL,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector.\n"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial3DEvalVector(polyOrd,inputOrdX,NULL,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector.\n"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,NULL) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector.\n"); + testStatus = false; + } + + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdX->type.type = PS_TYPE_U8; + if(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector.\n"); + testStatus = false; + } + inputOrdX->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdY->type.type = PS_TYPE_U8; + if(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector.\n"); + testStatus = false; + } + inputOrdY->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdZ->type.type = PS_TYPE_U8; + if(psPolynomial3DEvalVector(polyOrd,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector.\n"); + testStatus = false; + } + inputOrdZ->type.type = PS_TYPE_F64; + + psFree(inputOrdX); + psFree(inputOrdY); + psFree(inputOrdZ); + psFree(inputChebX); + psFree(inputChebY); + psFree(inputChebZ); + psFree(outputOrd); + psFree(outputCheb); + psFree(polyOrd); + psFree(polyCheb); + + return(testStatus); +} + Index: /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval4D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval4D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psPolynomialEval4D.c (revision 12167) @@ -0,0 +1,598 @@ +/** tst_psFunc11.c +* +* This test driver will exercise the psPolynomialXDEval functions for both +* ORD and CHEB type polynomials. +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-02-24 23:43:15 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +* +***************************************************************************/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define TERMS 4 +#define TESTPOINTS 5 +#define ERROR_TOL 0.001 + +static psS32 testPoly4DEval(void); +static psS32 testPoly4DEvalVector(void); + +testDescription tests[] = { + {testPoly4DEval,583,"psPolynomial4DEval",true,false}, + {testPoly4DEvalVector,000,"psPolynomial4DEvalVector",true,false}, + {NULL} + }; + +psF32 poly4DCoeff[TERMS][TERMS][TERMS][TERMS] = { + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + } + }; +psF64 Dpoly4DCoeff[TERMS][TERMS][TERMS][TERMS] = { + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + }, + { + { + { -1.1, 1.2, -1.3, 1.4}, + { 1.5, -1.6, 1.7, -1.8}, + { 0.1, -0.2, 0.3, -0.4}, + { -0.5, 0.6, -0.7, 0.8} + }, + { + { -2.1, 2.2, -2.3, 2.4}, + { 2.5, -2.6, 2.7, -2.8}, + { 3.1, -3.2, 3.3, -3.4}, + { -3.5, 3.6, -3.7, 3.8} + }, + { { -4.1, 4.2, -4.3, 4.4}, + { 4.5, -4.6, 4.7, -4.8}, + { 5.1, -5.2, 5.3, -5.4}, + { -5.5, 5.6, -5.7, 5.8} + }, + { { -6.1, 6.2, -6.3, 6.4}, + { 6.5, -6.6, 6.7, -6.8}, + { 7.1, -7.2, 7.3, -7.4}, + { -7.5, 7.6, -7.7, 7.8} + } + } + }; + +psF32 poly4DMask[TERMS][TERMS][TERMS][TERMS] = { + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + }, + { + { + { 0, 0, 0, 1}, + { 0, 0, 1, 0}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + }, + { + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0}, + { 1, 0, 0, 0} + }, + { + { 0, 1, 0, 0}, + { 0, 0, 1, 0}, + { 0, 1, 0, 0}, + { 0, 0, 1, 0} + }, + { + { 1, 0, 0, 0}, + { 0, 0, 0, 1}, + { 1, 0, 0, 0}, + { 0, 0, 0, 1} + } + } + }; + +psF32 poly4DWXYZValue[TESTPOINTS][4] = { + { 0.450, -0.780, 0.500, -0.123}, + { 0.297, 0.153, -0.354, 0.000}, + { 0.000, 0.153, -0.354, 0.321}, + { 0.297, 0.000, -0.354, 0.321}, + { 0.297, 0.153, 0.000, 0.321} + }; +psF64 Dpoly4DWXYZValue[TESTPOINTS][4] = { + { 0.450, -0.780, 0.500, -0.123}, + { 0.297, 0.153, -0.354, 0.000}, + { 0.000, 0.153, -0.354, 0.321}, + { 0.297, 0.000, -0.354, 0.321}, + { 0.297, 0.153, 0.000, 0.321} + }; + +psF32 poly4DResult[TESTPOINTS] = { -3.588753, -2.439566, -1.175955, -1.645497, -1.216915}; +psF64 Dpoly4DResult[TESTPOINTS] = { -3.588753, -2.439566, -1.175955, -1.645497, -1.216915}; + +psF32 poly4DWXYZChebValue[TESTPOINTS][4] = { + { 0.100, 0.000, 0.250, -0.250}, + { 0.100, -0.250, 0.000, 0.250}, + { 0.100, 0.250, -0.250, 0.000}, + { 0.300, 0.200, -0.300, -0.400}, + { -0.780, 0.990, -0.010, 0.500} + }; +psF64 Dpoly4DWXYZChebValue[TESTPOINTS][4] = { + { 0.100, 0.000, 0.250, -0.250}, + { 0.100, -0.250, 0.000, 0.250}, + { 0.100, 0.250, -0.250, 0.000}, + { 0.300, 0.200, -0.300, -0.400}, + { -0.780, 0.990, -0.010, 0.500} + }; +psF32 poly4DChebResult[TESTPOINTS] = { -0.216563, -0.297000, -0.033000, 0.432198, 1.785601 }; +psF64 Dpoly4DChebResult[TESTPOINTS] = { -0.216563, -0.297000, -0.033000, 0.432198, 1.785601 }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + + return !runTestSuite(stderr,"psPolynomialXDEval", tests, argc, argv); +} + +// This test will verify operation of 4D polynomial evaluation +psS32 testPoly4DEval(void) +{ + psBool testStatus = true; + // Allocate polynomial structure + psPolynomial4D* polyOrd = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + psPolynomial4D* polyCheb = psPolynomial4DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyOrd->coeff[i][j][k][l] = Dpoly4DCoeff[i][j][k][l]; + polyOrd->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + polyCheb->coeff[i][j][k][l] = 1.0; + polyCheb->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Evaluate test points and verify results + for(psS32 i = 0; i < TESTPOINTS; i++) { + psF64 result = psPolynomial4DEval(polyOrd, Dpoly4DWXYZValue[i][0], Dpoly4DWXYZValue[i][1], + Dpoly4DWXYZValue[i][2], Dpoly4DWXYZValue[i][3]); + if(fabs(Dpoly4DResult[i]-result) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated value %lg not as expected %lg.\n", + result, Dpoly4DResult[i]); + testStatus = false; + } + + psF64 resultCheb = psPolynomial4DEval(polyCheb, Dpoly4DWXYZChebValue[i][0], Dpoly4DWXYZChebValue[i][1], + Dpoly4DWXYZChebValue[i][2], Dpoly4DWXYZChebValue[i][3]); + if(fabs(Dpoly4DChebResult[i]-resultCheb) > ERROR_TOL ) { + printf("TEST ERROR: Evaluated Chebyshev value %lg not as expected %lg.\n", + resultCheb, Dpoly4DChebResult[i]); + testStatus = false; + } + } + + psFree(polyOrd); + psFree(polyCheb); + + // Allocate polynomial with invalid type + polyOrd = psPolynomial4DAlloc(99, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + // Attempt to evaluation invalid polynomial type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid type"); + psF64 result = psPolynomial4DEval(polyOrd,0.0, 0.0, 0.0, 0.0); + if ( !isnan(result) ) { + printf("TEST ERROR: Did not return NAN for invalid polynomial type"); + testStatus = false; + } + psFree(polyOrd); + + return(testStatus); +} + +psS32 testPoly4DEvalVector(void) +{ + psBool testStatus = true; + // Allocate polynomial + psPolynomial4D* polyOrd = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + psPolynomial4D* polyCheb = psPolynomial4DAlloc(PS_POLYNOMIAL_CHEB, TERMS-1, TERMS-1, TERMS-1, TERMS-1); + + // Set polynomial members + for(psS32 i = 0; i < TERMS; i++) { + for(psS32 j = 0; j < TERMS; j++) { + for(psS32 k = 0; k < TERMS; k++) { + for(psS32 l = 0; l < TERMS; l++) { + polyOrd->coeff[i][j][k][l] = Dpoly4DCoeff[i][j][k][l]; + polyOrd->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + polyCheb->coeff[i][j][k][l] = 1.0; + polyCheb->mask[i][j][k][l] = poly4DMask[i][j][k][l]; + } + } + } + } + + // Create input vectors + psVector* inputOrdW = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputOrdZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebW = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebX = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebY = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + psVector* inputChebZ = psVectorAlloc(TESTPOINTS, PS_TYPE_F64); + for(psS32 i = 0; i < TESTPOINTS; i++) { + inputOrdW->data.F64[i] = Dpoly4DWXYZValue[i][0]; + inputOrdX->data.F64[i] = Dpoly4DWXYZValue[i][1]; + inputOrdY->data.F64[i] = Dpoly4DWXYZValue[i][2]; + inputOrdZ->data.F64[i] = Dpoly4DWXYZValue[i][3]; + inputChebW->data.F64[i] = Dpoly4DWXYZChebValue[i][0]; + inputChebX->data.F64[i] = Dpoly4DWXYZChebValue[i][1]; + inputChebY->data.F64[i] = Dpoly4DWXYZChebValue[i][2]; + inputChebZ->data.F64[i] = Dpoly4DWXYZChebValue[i][3]; + inputOrdW->n++; + inputOrdX->n++; + inputOrdY->n++; + inputOrdZ->n++; + inputChebW->n++; + inputChebX->n++; + inputChebY->n++; + inputChebZ->n++; + } + + // Evaluate the vectors + psVector* outputOrd = psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ); + if(outputOrd == NULL) { + printf("TEST ERROR: Unexpected return of NULL."); + testStatus = false; + } + if(outputOrd->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d", + outputOrd->type.type, PS_TYPE_F64); + testStatus = false; + } + + psVector* outputCheb = psPolynomial4DEvalVector(polyCheb,inputChebW,inputChebX,inputChebY,inputChebZ); + if(outputCheb == NULL) { + printf("TEST ERROR: Unexpected return of NULL."); + testStatus = false; + } + if(outputCheb->type.type != PS_TYPE_F64) { + printf("TEST ERROR: Output vector of type %d expected %d", + outputCheb->type.type, PS_TYPE_F64); + testStatus = false; + } + + // Verify the results + for(psS32 i = 0; i < TESTPOINTS; i++) { + if(fabs(Dpoly4DResult[i]-outputOrd->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: Result[%d] %lg not equal to expected %lg", + i, outputOrd->data.F64[i], Dpoly4DResult[i]); + testStatus = false; + } + if(fabs(Dpoly4DChebResult[i]-outputCheb->data.F64[i]) > ERROR_TOL) { + printf("TEST ERROR: ResultCheb[%d] %lg not equal to expected %lg", + i, outputCheb->data.F64[i], Dpoly4DChebResult[i]); + testStatus = false; + } + } + + // Attempt to invoke function with null polynomial + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL polynomial"); + if(psPolynomial4DEvalVector(NULL,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL polynomial"); + testStatus = false; + } + + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial4DEvalVector(polyOrd,NULL,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,NULL,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,NULL,inputOrdZ) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector"); + testStatus = false; + } + // Attempt to invoke function with null input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input vector"); + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,NULL) != NULL) { + printf("TEST ERROR: Return of NULL expected for NULL input vector"); + testStatus = false; + } + + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdX->type.type = PS_TYPE_U8; + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector"); + testStatus = false; + } + inputOrdX->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdY->type.type = PS_TYPE_U8; + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector"); + testStatus = false; + } + inputOrdY->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdZ->type.type = PS_TYPE_U8; + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector"); + testStatus = false; + } + inputOrdZ->type.type = PS_TYPE_F64; + // Attempt to invoke function with a non F64 type input vector + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for invalid input type"); + inputOrdW->type.type = PS_TYPE_U8; + if(psPolynomial4DEvalVector(polyOrd,inputOrdW,inputOrdX,inputOrdY,inputOrdZ) != NULL) { + printf("TEST ERROR: Return NULL expected for non-F64 input vector"); + testStatus = false; + } + inputOrdW->type.type = PS_TYPE_F64; + + psFree(inputOrdX); + psFree(inputOrdY); + psFree(inputOrdZ); + psFree(inputOrdW); + psFree(inputChebW); + psFree(inputChebX); + psFree(inputChebY); + psFree(inputChebZ); + psFree(outputOrd); + psFree(outputCheb); + psFree(polyOrd); + psFree(polyCheb); + + return(testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psRandom.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psRandom.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psRandom.c (revision 12167) @@ -0,0 +1,409 @@ +/***************************************************************************** +This routine must ensure that the various random number generator functions +work properly. + + t00(): ensure that psRandom structs are properly allocated by psRandomAlloc(). + t01(): ensure that psRandomUniform() produces a sequence of numbers with + proper mean and stdev. + t02(): ensure that psRandomGaussian() produces a sequence of numbers with + proper mean and stdev. + t03(): ensure that psRandomPoisson() produces a sequence of numbers with + proper mean and stdev. + t04(): ensure that psRandomReset() properly seeds the random number + generator for psRandomUniform(). + t05(): ensure that psRandomReset() properly seeds the random number + generator for psRandomGaussian(). + t06(): ensure that psRandomReset() properly seeds the random number + generator for psRandomPoisson(). + *****************************************************************************/ +#include +#include +#include +#include +#include "pslib_strict.h" +#include "psTest.h" + +#define NUM_DATA 10000 +#define SEED 54321 +#define SEED2 345 +#define UNIFORM_MEAN 0.5 +#define UNIFORM_STDEV 0.3 +#define GAUSSIAN_MEAN 0.0 +#define GAUSSIAN_STDEV 1.0 +#define POISSON_MEAN 15.0 +#define POISSON_STDEV (POISSON_MEAN / 4) +#define ERROR_TOLERANCE 0.1 +psS32 testStatus = true; + +static psS32 testRandomAlloc(void); +static psS32 testRandomUniform(void); +static psS32 testRandomGaussian(void); +static psS32 testRandomPoisson(void); +static psS32 testRandomResetUniform(void); +static psS32 testRandomResetGaussian(void); +static psS32 testRandomResetPoisson(void); + +testDescription tests[] = { + {testRandomAlloc,000,"psRandomAlloc",0,false}, + {testRandomUniform,000,"psRandomUniform",0,false}, + {testRandomGaussian,000,"psRandomGaussian",0,false}, + {testRandomPoisson,000,"psRandomPoisson",0,false}, + {testRandomResetUniform,000,"psRandomReset",0,false}, + {testRandomResetGaussian,000,"psRandomReset",0,false}, + {testRandomResetPoisson,000,"psRandomReset",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + if(!runTestSuite(stderr,"psRandom",tests,argc,argv)) { + return 1; + } + + return 0; +} + +psS32 testRandomAlloc(void) +{ + psRandom *myRNG = NULL; + + // Valid type allocation + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + if (myRNG->type != PS_RANDOM_TAUS) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d",myRNG->type,PS_RANDOM_TAUS); + return 2; + } + psFree(myRNG); + + // Valid type allocation with seed equal to zero + int fd1 = creat("seed_msglog1.txt", 0666); + // psLogSetDestination("file:seed_msglog1.txt"); + psLogSetDestination(fd1); + myRNG = psRandomAlloc(PS_RANDOM_TAUS, 0); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(2); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 3; + } + if (myRNG->type != PS_RANDOM_TAUS) { + psError(PS_ERR_UNKNOWN,true,"Type %d not as expected %d",myRNG->type,PS_RANDOM_TAUS); + return 4; + } + psFree(myRNG); + + // Invalid type allocation + psLogMsg(__func__,PS_LOG_INFO,"Invalid type, should generate error message"); + myRNG = psRandomAlloc(100,SEED); + if (myRNG != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for invalid type"); + return 5; + } + + // Negative seed value + myRNG = psRandomAlloc(PS_RANDOM_TAUS,-5); + if(myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return allocated psRandom"); + return 6; + } + close(fd1); + psFree(myRNG); + + return 0; +} + +psS32 testRandomUniform(void) +{ + psRandom *myRNG = NULL; + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Initialize vector data with random number + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans->data.F64[i] = psRandomUniform(myRNG); + } + // Perform vector stats on random data (mean, stdev) + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + // Verify mean and stdev + if ((fabs(stats->sampleMean - UNIFORM_MEAN) / UNIFORM_MEAN) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomUniform mean is %.2f, should be %.2f", + stats->sampleMean, UNIFORM_MEAN); + return 2; + } + if ((fabs(stats->sampleStdev - UNIFORM_STDEV) / UNIFORM_STDEV) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomUniform stdev is %.2f, should be %.2f", + stats->sampleStdev, UNIFORM_STDEV); + return 3; + } + + psFree(myRNG); + psFree(rans); + psFree(stats); + + psLogMsg(__func__,PS_LOG_INFO,"NULL psRandom variable, should generate error message"); + if(psRandomUniform(NULL) != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not return zero for null psRandom"); + return 4; + } + + return 0; +} + +psS32 testRandomGaussian(void) +{ + psRandom *myRNG = NULL; + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Initialize vector with random data + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans->data.F64[i] = psRandomGaussian(myRNG); + } + + // Perform vector stats on data (mean, stdev) + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + + // Verify statistics + if ((fabs(stats->sampleMean - GAUSSIAN_MEAN) / 1.0) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomGaussian mean is %.2f, should be %.2f", + stats->sampleMean, GAUSSIAN_MEAN); + return 2; + } + if ((fabs(stats->sampleStdev - GAUSSIAN_STDEV) / GAUSSIAN_STDEV) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomGaussian stdev is %.2f, should be %.2f", + stats->sampleStdev, GAUSSIAN_STDEV); + return 3; + } + + psFree(myRNG); + psFree(rans); + psFree(stats); + + psLogMsg(__func__,PS_LOG_INFO,"NULL psRandom variable, should generate error message"); + if(psRandomGaussian(NULL) != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not return zero for null psRandom"); + return 4; + } + + return 0; +} + +psS32 testRandomPoisson(void) +{ + psRandom *myRNG = NULL; + psVector *rans = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans->n = rans->nalloc; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Initialize vector with random data + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + + // Perform statistics on data + stats = psVectorStats(stats, rans, NULL, NULL, 0); + stats->options = PS_STAT_SAMPLE_STDEV; + stats = psVectorStats(stats, rans, NULL, NULL, 0); + if ((fabs(stats->sampleMean - POISSON_MEAN) / POISSON_MEAN) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomPoisson mean is %.2f, should be %.2f", + stats->sampleMean, POISSON_MEAN); + return 2; + } + if ((fabs(stats->sampleStdev - POISSON_STDEV) / POISSON_STDEV) > ERROR_TOLERANCE) { + psError(PS_ERR_UNKNOWN,true,"psRandomPoisson stdev is %.2f, should be %.2f", + stats->sampleStdev, POISSON_STDEV); + return 3; + } + + psFree(myRNG); + psFree(rans); + psFree(stats); + + psLogMsg(__func__,PS_LOG_INFO,"NULL psRandom variable, should generate error message"); + if(psRandomPoisson(NULL, POISSON_MEAN) != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not return zero for null psRandom"); + return 4; + } + + return 0; +} + +psS32 testRandomResetUniform(void) +{ + psRandom *myRNG = NULL; + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Random reset + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans00->data.F64[i] = psRandomUniform(myRNG); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans01->data.F64[i] = psRandomUniform(myRNG); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans02->data.F64[i] = psRandomUniform(myRNG); + } + + // Verify reset to original seed produces same results + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + psError(PS_ERR_UNKNOWN,true,"psRandomUniform did not produce the same results with the same seed"); + return i+1; + } + } + + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + + psRandom *myRNG1 = NULL; + myRNG1 = psRandomAlloc(PS_RANDOM_TAUS, SEED); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(0); + psRandomReset(myRNG1,0); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(2); + psFree(myRNG1); + + psLogMsg(__func__,PS_LOG_INFO,"Reset a NULL psRandom variable, should generate an error message"); + psRandomReset(NULL,SEED); + + return 0; +} + +psS32 testRandomResetGaussian(void) +{ + psRandom *myRNG = NULL; + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Initialize random data in vectors + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans00->data.F64[i] = psRandomGaussian(myRNG); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans01->data.F64[i] = psRandomGaussian(myRNG); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans02->data.F64[i] = psRandomGaussian(myRNG); + } + + // Verify data from original seed produces same data after reset + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + psError(PS_ERR_UNKNOWN,true,"psRandomGaussian did not produce the same results with the same seed"); + return 2; + } + } + + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + + return 0; +} + +psS32 testRandomResetPoisson(void) +{ + psRandom *myRNG = NULL; + psVector *rans00 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans00->n = rans00->nalloc; + psVector *rans01 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans01->n = rans01->nalloc; + psVector *rans02 = psVectorAlloc(NUM_DATA, PS_TYPE_F64); + rans02->n = rans02->nalloc; + + myRNG = psRandomAlloc(PS_RANDOM_TAUS, SEED); + if (myRNG == NULL) { + psError(PS_ERR_UNKNOWN,true,"Could not allocate psRandom structure"); + return 1; + } + + // Initialize vectors with random data + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans00->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + psRandomReset(myRNG, SEED2); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans01->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + psRandomReset(myRNG, SEED); + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + rans02->data.F64[i] = psRandomPoisson(myRNG, POISSON_MEAN); + } + + // Verify the original seed produces same data after reset + for (psS32 i = 0 ; i < NUM_DATA ; i++) { + if (rans00->data.F64[i] != rans02->data.F64[i]) { + psError(PS_ERR_UNKNOWN,true,"psRandomPoisson did not produce the same results with the same seed"); + return 2; + } + } + + psFree(myRNG); + psFree(rans00); + psFree(rans01); + psFree(rans02); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psSparse.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psSparse.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psSparse.c (revision 12167) @@ -0,0 +1,59 @@ + +void psSparseMatrixTest () +{ + + // build a sparse matrix + psSparse *sparse = psSparseAlloc (3, 9); + + psSparseMatrixElement (sparse, 0, 0, 3.0); + psSparseMatrixElement (sparse, 1, 1, 2.0); + psSparseMatrixElement (sparse, 2, 2, 1.0); + + psSparseMatrixElement (sparse, 1, 0, 0.1); + psSparseMatrixElement (sparse, 2, 0, -0.1); + + psSparseResort (sparse); + for (int i = 0; i < sparse->Nelem; i++) { + fprintf (stderr, "%d %d %f\n", + sparse->Si->data.S32[i], + sparse->Sj->data.S32[i], + sparse->Aij->data.F32[i]); + } + + psVector *x = psVectorAlloc (3, PS_DATA_F32); + x->data.F32[0] = 3; + x->data.F32[1] = 5; + x->data.F32[2] = 7; + x->n = 3; + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + + + psVector *B = psSparseMatrixTimesVector (NULL, sparse, x); + fprintf (stderr, "B: %f %f %f\n", B->data.F32[0], B->data.F32[1], B->data.F32[2]); + + sparse->Bfj->data.F32[0] = B->data.F32[0]; + sparse->Bfj->data.F32[1] = B->data.F32[1]; + sparse->Bfj->data.F32[2] = B->data.F32[2]; + + psSparseConstraint constraint; + constraint.paramMin = -1e8; + constraint.paramMax = +1e8; + constraint.paramDelta = +1e8; + + x = psSparseSolve (x, constraint, sparse, 0); + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + + x = psSparseSolve (x, constraint, sparse, 1); + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + + x = psSparseSolve (x, constraint, sparse, 2); + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + + x = psSparseSolve (x, constraint, sparse, 3); + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + + x = psSparseSolve (x, constraint, sparse, 4); + fprintf (stderr, "x: %f %f %f\n", x->data.F32[0], x->data.F32[1], x->data.F32[2]); + return; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psSpline1D.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psSpline1D.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psSpline1D.c (revision 12167) @@ -0,0 +1,892 @@ +/* @file tst_psImageManip.c +* +* @brief This file will contain tests for all of the public psLib functions +* that implement 1-D spline functionality: +* psSpline1DAlloc() +* psSpline1DEval() +* psSpline1DEvalVector() +* psVectorFitSpline1D() +* +* This file is composed of the tests formerly in tst_psFunc02.c, +* tst_psFunc03.c, tst_psFunc04.c, tst_psFunc05.c, and tst_psFunc07.c. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-07 23:52:54 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 psSplineAllocTest( void ); +static psS32 psSplineEvalTest( void ); +static psS32 psSplineEvalVectorTest( void ); + +// {testFunction, testpointNumber, description, expected rc, boolean-ignore this test} +testDescription tests[] = { + {psSplineAllocTest, 665, "(TEST A) psSplineAllocTest",true, false}, + {psSplineEvalTest, 666, "(TEST B) psSplineEvalTest",true, false}, + {psSplineEvalVectorTest,667,"(TEST C) psSplineEvalVectorTest",true,false}, + {NULL} + }; + +#define ERROR_TOLERANCE_PERCENT 1.00 +/********************************************************************************* +CheckErrorF32(psF32 actual, psF32 expect): this routine returns FALSE if the +actual and expect arguments are with ERROR_TOLERANCE_PERCENT of each other, +otherwise it returns TRUE. + ********************************************************************************/ +psBool CheckErrorF32( + psF32 actual, + psF32 expect) +{ + if ((fabs(actual - expect) / fabs(expect)) > ERROR_TOLERANCE_PERCENT) { + return(true); + } else { + return(false); + } +} + +psS32 main( + psS32 argc, + char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel( PS_LOG_INFO ); + // + // Set the following trace levels to track what is happening in the + // various functions in psSpline.c + // + psTraceSetLevel(".", 0); + psTraceSetLevel("spline1DFree", 0); + psTraceSetLevel("calculateSecondDerivs", 0); + psTraceSetLevel("vectorBinDisectF32", 0); + psTraceSetLevel("vectorBinDisectF64", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psSpline1DAlloc", 0); + psTraceSetLevel("psVectorFitSpline1D", 0); + psTraceSetLevel("psSpline1DEval", 0); + psTraceSetLevel("psSpline1DEvalVector", 0); + + return ( ! runTestSuite( stderr, "psSpline1D", tests, argc, argv ) ); +} + +psS32 psSplineAllocTest() +{ + psTraceSetLevel(".", 0); + psTraceSetLevel("spline1DFree", 0); + psTraceSetLevel("calculateSecondDerivs", 0); + psTraceSetLevel("vectorBinDisectF32", 0); + psTraceSetLevel("vectorBinDisectF64", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psSpline1DAlloc", 0); + psTraceSetLevel("psVectorFitSpline1D", 0); + psTraceSetLevel("psSpline1DEval", 0); + psTraceSetLevel("psSpline1DEvalVector", 0); + + psS32 testStatus = true; + psS32 currentId = psMemGetId(); + + psSpline1D *tmpSpline = psSpline1DAlloc(); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != 0) { + printf("TEST ERROR: psSpline1DAlloc() did not properly set the psSpline1D->n member.\n"); + testStatus = false; + } + + if (tmpSpline->spline != NULL) { + printf("TEST ERROR: psSpline1DAlloc() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } + + if (tmpSpline->knots != NULL) { + printf("TEST ERROR: psSpline1DAlloc() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 != NULL) { + printf("TEST ERROR: psSpline1DAlloc() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + /* + XXX: Must allocate these members. + tmpSline->spline = (psPolynomial1D **) psAlloc(numSplines * sizeof(psPolynomial1D *)); + for (psS32 i=0;ispline[i] = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 3); + } + */ + + psFree(tmpSpline); + psMemCheckCorruption(1); + psS32 memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return(testStatus); +} + + +/********************************************************************************* +psSplineEvalTest_sub(): We psVectorFitSpline1D with NULL arguments. psSpline1DEval() + ********************************************************************************/ +psS32 psSplineEvalTest_sub(psS32 NumSplines) +{ + psS32 testStatus = true; + psS32 memLeaks=0; + psS32 currentId = psMemGetId(); + + printf("\n"); + printf("Calling psVectorFitSpline1D() with NULL y-vector. Should generate error.\n"); + psSpline1D *tmpSpline = psVectorFitSpline1D(NULL, NULL); + if (tmpSpline != NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not return NULL.\n"); + testStatus = false; + psFree(tmpSpline); + } + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return (testStatus); +} + + +/********************************************************************************* +psSplineEvalTest_sub00(): We test the psVectorFitSpline1D, psSpline1DEval() +functions with a very simple x->y mapping (defined by myFunc00() below). We +do this for both F32 and F64 versions of the input x and y vectors. + ********************************************************************************/ +psF32 myFunc00(psF32 x) +{ + return(x); +} + +psS32 psSplineEvalTest_sub00(psS32 NumSplines) +{ + psS32 testStatus = true; + psS32 memLeaks=0; + psF32 x; + psF32 y; + psS32 currentId = psMemGetId(); + psVector *xF32 = NULL; + psVector *xF64 = NULL; + psVector *yF32 = NULL; + psVector *yF64 = NULL; + psSpline1D *tmpSpline = NULL; + + printf("\n"); + printf("psSplineEvalTest_sub00(): We test the psVectorFitSpline1D, psSpline1DEval() functions with a very\n"); + printf("simple x->y mapping (defined by myFunc00()). We do this for both F32\n"); + printf("and F64 versions of the input x and y vectors.\n"); + printf(" Number of splines: %d\n", NumSplines); + /****************************************************************************/ + /* PS_TYPE_F32, PS_TYPE_F32 test */ + /****************************************************************************/ + printf("Performing the F32 test....\n"); + xF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + xF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + yF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + yF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + xF32->n = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(xF32, yF32); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure (1)\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;in = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(xF64, yF64); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;iy mapping (defined by myFunc00b() below). +We do this for both F32 and F64 versions of the input x and y vectors. + ********************************************************************************/ +#define A 4.0 +#define B -3.0 +#define C 0.2 +#define D 0.1 +psF32 myFunc00b(psF32 x) +{ + return(A + x * (B + x * (C + x * (D)))); +} + +psS32 psSplineEvalTest_sub00b(psS32 NumSplines) +{ + printf("\n"); + printf("psSplineEvalTest_sub00b(): We test the psVectorFitSpline1D, psSpline1DEval() functions with a\n"); + printf("more complicated x->y mapping (defined by myFunc00b()). We do this for\n"); + printf("both F32 and F64 versions of the input x and y vectors.\n"); + printf(" Number of splines: %d\n", NumSplines); + psS32 testStatus = true; + psS32 memLeaks=0; + psF32 x; + psF32 y; + psS32 currentId = psMemGetId(); + psVector *xF32 = NULL; + psVector *xF64 = NULL; + psVector *yF32 = NULL; + psVector *yF64 = NULL; + psSpline1D *tmpSpline = NULL; + + /****************************************************************************/ + /* PS_TYPE_F32, PS_TYPE_F32 test */ + /****************************************************************************/ + printf("Performing the F32 test....\n"); + xF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + xF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + yF32 = psVectorAlloc(NumSplines+1, PS_TYPE_F32); + yF64 = psVectorAlloc(NumSplines+1, PS_TYPE_F64); + xF32->n = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00b(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00b(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(xF32, yF32); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;in = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00b(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00b(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(xF64, yF64); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;in = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00b(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00b(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(NULL, yF32); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;in = NumSplines+1; + xF64->n = NumSplines+1; + yF32->n = NumSplines+1; + yF64->n = NumSplines+1; + + for (psS32 i=0;idata.F32[i] = (psF32) i; + xF64->data.F64[i] = (psF64) i; + yF32->data.F32[i] = (psF32) myFunc00b(xF32->data.F32[i]); + yF64->data.F64[i] = (psF64) myFunc00b(xF32->data.F32[i]); + } + + tmpSpline = psVectorFitSpline1D(NULL, yF64); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + if (testStatus == true) { + for (psS32 i=0;in = NumSplines+1; + yF32->n = NumSplines+1; + xF32Test->n = NumSplines; + xF64Test->n = NumSplines; + + + for (psS32 i=0;idata.F32[i] = (psF32) i; + yF32->data.F32[i] = (psF32) i; + } + + tmpSpline = psVectorFitSpline1D(xF32, yF32); + if (tmpSpline == NULL) { + printf("TEST ERROR: Could not allocate psSpline1D data structure\n"); + testStatus = false; + } + + if (tmpSpline->n != NumSplines) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->n member.\n"); + printf(" psSpline1D->NumSplines was %d, should be %d.\n", tmpSpline->n, NumSplines); + testStatus = false; + } + + if (tmpSpline->spline == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline member.\n"); + testStatus = false; + } else { + for (psS32 i = 0 ; i < NumSplines ; i++) { + if (tmpSpline->spline[i] == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->spline[%d] member.\n", i); + testStatus = false; + } else { + if (psTraceGetLevel(__func__) >= 6) { + PS_POLY_PRINT_1D(tmpSpline->spline[i]); + } + } + } + } + + if (tmpSpline->knots == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->knots member.\n"); + testStatus = false; + } + + if (tmpSpline->p_psDeriv2 == NULL) { + printf("TEST ERROR: psVectorFitSpline1D() did not properly set the psSpline1D->p_psDeriv2 member.\n"); + testStatus = false; + } + + printf("Testing psSpline1DEvalVector() with an F32 vector.\n"); + if (testStatus == true) { + for (psS32 i=0;idata.F32[i] = 0.5 + (psF32) i; + } + yF32Test = psSpline1DEvalVector(tmpSpline, xF32Test); + + for (psS32 i=0;idata.F32[i], xF32Test->data.F32[i])) { + printf("TEST ERROR: f(%f) is %f\n", xF32Test->data.F32[i], yF32Test->data.F32[i]); + testStatus = false; + } + } + psFree(yF32Test); + } + + printf("Testing psSpline1DEvalVector() with an F64 vector.\n"); + if (testStatus == true) { + for (psS32 i=0;idata.F64[i] = 0.5 + (psF64) i; + } + yF32Test = psSpline1DEvalVector(tmpSpline, xF64Test); + + for (psS32 i=0;idata.F32[i], (psF32) xF64Test->data.F64[i])) { + printf("TEST ERROR: f(%f) is %f\n", (psF32) xF64Test->data.F64[i], yF32Test->data.F32[i]); + testStatus = false; + } + } + } + + psFree(tmpSpline); + psFree(xF32); + psFree(yF32); + psFree(xF32Test); + psFree(yF32Test); + psFree(xF64Test); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + return (testStatus); +} + +psS32 psSplineEvalVectorTest() +{ + psTraceSetLevel(".", 0); + psTraceSetLevel("spline1DFree", 0); + psTraceSetLevel("calculateSecondDerivs", 0); + psTraceSetLevel("vectorBinDisectF32", 0); + psTraceSetLevel("vectorBinDisectF64", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psSpline1DAlloc", 0); + psTraceSetLevel("psVectorFitSpline1D", 0); + psTraceSetLevel("psSpline1DEval", 0); + psTraceSetLevel("psSpline1DEvalVector", 0); + + return(psSplineEvalVectorTest_sub00(10)); +} + Index: /branches/rel-1-1/psLib/test/math/tst_psStats00.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats00.c (revision 12167) @@ -0,0 +1,435 @@ +/** @file tst_psStats00.c +* +* @brief Contains tests for psVectorStats with sample mean calculations +* +* We extensively test the code with data type PS_TYPE_F32. If these pass, we +* do a much simpler test with data type PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. +* +* If the psStats,c code ever changes such that vectors of different type +* are handled by different routines, then these tests must be extended. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-07-28 00:44:05 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define ERROR_TOL 0.0001 +#define N 15 +#define VERBOSE 1 +static psS32 testStatsSampleMeanF32(void); +static psS32 testStatsSampleMeanS8(void); +static psS32 testStatsSampleMeanU16(void); +static psS32 testStatsSampleMeanF64(void); + +testDescription tests[] = { + {testStatsSampleMeanF32, 512, "psVectorStats",0,false}, + {testStatsSampleMeanS8, 512, "psVectorStats",0,false}, + {testStatsSampleMeanU16, 512, "psVectorStats",0,false}, + {testStatsSampleMeanF64, 512, "psVectorStats",0,false}, + {NULL} + }; + +static psF32 samplesF32[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psS8 samplesS8[N] = {1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15}; +static psU16 samplesU16[N] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15}; +static psF64 samplesF64[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psF32 errorsF32[N] = { -0.10, 0.11, -0.12, 0.13, -0.14, 0.15, -0.16, 0.17, + -0.18, 0.19, -0.20, 0.21, -0.22, 0.23, -0.24 }; + +static psF64 expectedMeanNoMaskF32 = 2.060667; +static psF64 expectedMeanWithMaskF32 = 2.123846; +static psF64 expectedMeanNoMaskS8 = 2.000000; +static psF64 expectedMeanNoMaskU16 = 8.000000; +static psF64 expectedMeanNoMaskF64 = 2.060667; +static psF64 expectedMeanRangeNoMaskF32 = 0.137500; +static psF64 expectedMeanRangeWithMaskF32 = -0.366667; +static psF64 expectedWeightMeanNoMaskF32 = 1.807210; +static psF64 expectedWeightMeanWithMaskF32 = 1.890217; +static psF64 expectedWeightMeanNoMaskRangeF32 = 0.640952; +static psF64 expectedWeightMeanWithMaskRangeF32 = 0.046574; + +psF64 rtc(void); +psF64 sT, eT; +psF64 diff; + +#include +psS32 main(psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorSampleMean", 10); + psTraceSetLevel("p_psVectorMax", 0); + psTraceSetLevel("p_psVectorMin", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("p_psNormalizeVectorRange", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + return ( ! runTestSuite(stderr, "psVectorStats",tests,argc,argv) ); +} + +psS32 testStatsSampleMeanF32(void) +{ + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psVector *myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + psVector *myErrors = psVectorAlloc(N, PS_TYPE_F32); + myErrors->n = N; + psVector *maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + psF64 mean = 0.0; + // Set the appropriate values for the vector data. + for (long i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + myErrors->data.F32[i] = errorsF32[i]; + } + + // Set the mask vector and calculate the expected maximum. + for (psS32 i = 0; i < N; i++) { + + if (i > 1) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanNoMaskF32); + } + if (isnan(myStats->sampleMean) || (fabs(mean - expectedMeanNoMaskF32) > ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedMeanNoMaskF32); + return 1; + } + + // Invoke psVectorStats with no vector mask and error vector + myStats = psVectorStats(myStats, myVector, myErrors, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedWeightMeanNoMaskF32); + } + if (isnan(myStats->sampleMean) || (fabs(mean - expectedWeightMeanNoMaskF32) > ERROR_TOL)) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedWeightMeanNoMaskF32); + return 10; + } + + // Invoke psVectorStats with no vector mask and data range + myStats->min = -10.0; + myStats->max = 8.0; + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE; + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanRangeNoMaskF32); + } + if ( fabs(mean - expectedMeanRangeNoMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Return value %f not as expected %f", + mean, expectedMeanRangeNoMaskF32); + return 2; + } + + // Invoke psVectorStats with no vector mask, errors and data range + myStats = psVectorStats(myStats, myVector, myErrors, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedWeightMeanNoMaskRangeF32); + } + if ( fabs(mean - expectedWeightMeanNoMaskRangeF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Return value %f not as expected %f", + mean, expectedWeightMeanNoMaskRangeF32); + return 20; + } + myStats->options = PS_STAT_SAMPLE_MEAN; + + /*************************************************************************/ + /* Call psVectorStats() with vector mask=1. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + mean = myStats->sampleMean; + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanWithMaskF32); + } + if ( fabs(mean - expectedMeanWithMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedMeanWithMaskF32); + return 3; + } + + // Invoke psVectorStats with vector mask and error vector + myStats = psVectorStats(myStats, myVector, myErrors, maskVector, 1); + mean = myStats->sampleMean; + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedWeightMeanWithMaskF32); + } + if ( fabs(mean - expectedWeightMeanWithMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedWeightMeanWithMaskF32); + return 30; + } + + // Invoke psVectorStats with vector mask and data range + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_USE_RANGE; + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanRangeWithMaskF32); + } + if ( fabs(mean - expectedMeanRangeWithMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Return value %f not as expected %f", + mean, expectedMeanRangeWithMaskF32); + return 4; + } + + // Invoke psVectorStats with vector mask, errors, and data range + myStats = psVectorStats(myStats, myVector, myErrors, maskVector, 1); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedWeightMeanWithMaskRangeF32); + } + if ( fabs(mean - expectedWeightMeanWithMaskRangeF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Return value %f not as expected %f", + mean, expectedWeightMeanWithMaskRangeF32); + return 40; + } + myStats->options = PS_STAT_SAMPLE_MEAN; + + /*************************************************************************/ + /* Call psVectorStats() with vector mask=2. */ + /*************************************************************************/ + // Set the mask vector and calculate the expected maximum. + // Set the mask vector. + for (psS32 i = 0; i < N; i++) { + if (maskVector->data.U8[i] == 1) { + maskVector->data.U8[i] = 2; + } + } + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 2); + mean = myStats->sampleMean; + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanWithMaskF32); + } + if (fabs(mean - expectedMeanWithMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean,expectedMeanWithMaskF32); + return 5; + } + + /*************************************************************************/ + /* Call psVectorStats() with vector mask=3. */ + /*************************************************************************/ + // Set the mask vector and calculate the expected maximum. + // Set the mask vector. + for (psS32 i = 0; i < N; i++) { + if (maskVector->data.U8[i] == 2) { + maskVector->data.U8[i] = 3; + } + } + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 4); + mean = myStats->sampleMean; + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanNoMaskF32); + } + if (fabs(mean - expectedMeanNoMaskF32) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Return value %f not as expected %f", + mean,expectedMeanNoMaskF32); + return 6; + } + + // Mask all values and verify return is NAN + for(psS32 i = 0; i < N; i++) { + maskVector->data.U8[i] = 1; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate warning message"); + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + mean = myStats->sampleMean; + if( !isnan(mean) ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN with all values masked"); + return 7; + } + + /*************************************************************************/ + /* Call psVectorStats() with NULL inputs. */ + /*************************************************************************/ + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + if( psVectorStats(myStats, NULL, NULL, NULL, 0) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psVectorStats did not return NULL"); + return 8; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + psStats *myStats2 = psVectorStats(NULL, myVector, NULL, NULL, 0); + if ( myStats2 != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psVectorStats did not return NULL"); + return 9; + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree(myStats); + psFree(myVector); + psFree(myErrors); + psFree(maskVector); + psFree(myStats2); + + return 0; +} + +psS32 testStatsSampleMeanS8(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 mean = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + myVector = psVectorAlloc(N, PS_TYPE_S8); + myVector->n = N; + + mean = 0.0; + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.S8[i] = samplesS8[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanNoMaskS8); + } + if ( fabs(mean - expectedMeanNoMaskS8) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedMeanNoMaskS8); + return 1; + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsSampleMeanU16(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 mean = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + + mean = 0.0; + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.U16[i] = samplesU16[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanNoMaskU16); + } + if ( fabs(mean - expectedMeanNoMaskU16) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedMeanNoMaskU16); + return 1; + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsSampleMeanF64(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 mean = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + + mean = 0.0; + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.F64[i] = samplesF64[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + mean = myStats->sampleMean; + // Verify return value is as expected + if (VERBOSE) { + printf("psVectorStats() returned %.2f: expected was %.2f\n", mean, expectedMeanNoMaskF64); + } + if ( fabs(mean - expectedMeanNoMaskF64) > ERROR_TOL ) { + psError(PS_ERR_UNKNOWN,true,"Returned value %f not as expected %f", + mean, expectedMeanNoMaskF64); + return 1; + } + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + psFree(myStats); + psFree(myVector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psStats01.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats01.c (revision 12167) @@ -0,0 +1,276 @@ +/** @file tst_psStats01.c +* +* @brief Contains tests for psVectorStats with max calculations. +* +* We extensively test the code with data type PS_TYPE_F32. If these pass, we +* do a much simpler test with data types PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. +* +* If the psStats,c code every changes such that vectors of different type +* are handled by different routines, then these tests must be extended. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-07-28 00:44:05 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define N 15 +#define ERROR_TOL 0.0001 + +static psS32 testStatsMaxF32(void); +static psS32 testStatsMaxS8(void); +static psS32 testStatsMaxU16(void); +static psS32 testStatsMaxF64(void); + +testDescription tests[] = { + {testStatsMaxF32, 518, "psVectorStats", 0, false}, + {testStatsMaxS8, 518, "psVectorStats", 0, false}, + {testStatsMaxU16, 518, "psVectorStats", 0, false}, + {testStatsMaxF64, 518, "psVectorStats", 0, false}, + {NULL} + }; + +static psF32 samplesF32[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psS8 samplesS8[N] = {1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15}; +static psU16 samplesU16[N] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15}; +static psF64 samplesF64[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; + +static psF64 expectedMaxNoMaskF32 = 14.04; +static psF64 expectedMaxNoMaskS8 = 14.00; +static psF64 expectedMaxNoMaskU16 = 15.00; +static psF64 expectedMaxNoMaskF64 = 14.04; + +static psF64 expectedMaxWithMaskF32 = 13.03; +static psF64 expectedMaxRangeNoMaskF32 = 10.00; +static psF64 expectedMaxRangeWithMaskF32 = 13.03; + +psS32 main(psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorMax", 0); + psTraceSetLevel("p_psVectorMin", 0); + psTraceSetLevel("p_psVectorCheckNonEmpty", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + return ( ! runTestSuite(stderr, "psVectorStats", tests, argc, argv) ); +} + +psS32 testStatsMaxF32(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psVector* maskVector = NULL; + psF64 max = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MAX); + myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + } + + // Set the mask vector and calculate the expected maximum. + for (psS32 i = 0; i < N; i++) { + if (i < 13) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if (fabs(max - expectedMaxNoMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max no mask return value %lf not as expected %lf", + max, expectedMaxNoMaskF32); + return 1; + } + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + max = myStats->max; + if (fabs(max - expectedMaxWithMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max with mask return value %lf not as expected %lf", + max, expectedMaxWithMaskF32); + return 2; + } + + // Invoke function with data range with no mask + myStats->options = PS_STAT_MAX | PS_STAT_USE_RANGE; + myStats->max = 10.1; + myStats->min = 0.0; + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if(fabs(max - expectedMaxRangeNoMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max with range no mask %lf not as expected %lf", + max, expectedMaxRangeNoMaskF32); + return 3; + } + + // Invoke function with data range and mask + myStats->max = 14.0; + myStats->min = 0.0; + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + max = myStats->max; + if(fabs(max - expectedMaxRangeWithMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max with range with mask %lf not as expected %lf", + max, expectedMaxRangeWithMaskF32); + return 3; + } + + // Invoke function with data range with no valid data + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + myStats->max = 100.00; + myStats->min = 90.00; + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if(!isnan(max)) { + psError(PS_ERR_UNKNOWN,true,"Max with range with no valid elemenets did not return NAN"); + return 4; + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + + return 0; +} + +psS32 testStatsMaxS8(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 max = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MAX); + myVector = psVectorAlloc(N, PS_TYPE_S8); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.S8[i] = samplesS8[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if (fabs(max - expectedMaxNoMaskS8) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max no mask return value %lf not as expected %lf", + max, expectedMaxNoMaskS8); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsMaxU16(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 max = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MAX); + myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.U16[i] = samplesU16[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if (fabs(max - expectedMaxNoMaskU16) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max no mask return value %lf not as expected %lf", + max, expectedMaxNoMaskU16); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsMaxF64(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 max = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MAX); + myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.F64[i] = samplesF64[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + max = myStats->max; + + if (fabs(max - expectedMaxNoMaskF64) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Max no mask return value %lf not as expected %lf", + max, expectedMaxNoMaskF64); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psStats02.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats02.c (revision 12167) @@ -0,0 +1,277 @@ +/** @file tst_psStats02.c +* +* @brief Contains tests for psVectorStats with min calculations +* +* We extensively test the code with data type PS_TYPE_F32. If these pass, we +* do a much simpler test with data types PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_F64. +* +* If the psStats,c code every changes such that vectors of different type +* are handled by different routines, then these tests must be extended. +* +* @author GLG, MHPCC +* +* @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-07-28 00:44:05 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, Univ. of Hawaii +*/ + +#include "pslib_strict.h" +#include "psTest.h" + +#define N 15 +#define ERROR_TOL 0.0001 + +static psS32 testStatsMinF32(void); +static psS32 testStatsMinS8(void); +static psS32 testStatsMinU16(void); +static psS32 testStatsMinF64(void); + +testDescription tests[] = { + {testStatsMinF32, 518, "psVectorStats", 0, false}, + {testStatsMinS8, 518, "psVectorStats", 0, false}, + {testStatsMinU16, 518, "psVectorStats", 0, false}, + {testStatsMinF64, 518, "psVectorStats", 0, false}, + {NULL} + }; + +static psF32 samplesF32[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; +static psS8 samplesS8[N] = {1, 2, -3, 4, 5, -6, 7, 8, -9, 10, 11, -12, 13, 14, -15}; +static psU16 samplesU16[N] = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15}; +static psF64 samplesF64[N] = { 1.1, 2.2, -3.3, 4.4, 5.5, -6.6, 7.7, 8.8, -9.9, 10.0, + 11.01, -12.02, 13.03, 14.04, -15.05 }; + +static psF64 expectedMinNoMaskF32 = -15.05; +static psF64 expectedMinNoMaskS8 = -15.00; +static psF64 expectedMinNoMaskU16 = 1.00; +static psF64 expectedMinNoMaskF64 = -15.05; + +static psF64 expectedMinWithMaskF32 = -12.02; +static psF64 expectedMinRangeNoMaskF32 = 1.10; +static psF64 expectedMinRangeWithMaskF32 = -12.02; + +psS32 main(psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorMax", 0); + psTraceSetLevel("p_psVectorMin", 0); + psTraceSetLevel("p_psVectorCheckNonEmpty", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("p_psNormalizeVectorRange", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + return ( ! runTestSuite(stderr, "psVectorStats", tests, argc, argv) ); +} + +psS32 testStatsMinF32(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psVector* maskVector = NULL; + psF64 min = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MIN); + myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.F32[i] = samplesF32[i]; + } + + // Set the mask vector and calculate the expected maximum. + for (psS32 i = 0; i < N; i++) { + if (i < 13) { + maskVector->data.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if (fabs(min - expectedMinNoMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min no mask return value %lf not as expected %lf", + min, expectedMinNoMaskF32); + return 1; + } + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + min = myStats->min; + if (fabs(min - expectedMinWithMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min with mask return value %lf not as expected %lf", + min, expectedMinWithMaskF32); + return 2; + } + + // Invoke function with data range with no mask + myStats->options = PS_STAT_MIN | PS_STAT_USE_RANGE; + myStats->max = 10.1; + myStats->min = 0.0; + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if(fabs(min - expectedMinRangeNoMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min with range no mask %lf not as expected %lf", + min, expectedMinRangeNoMaskF32); + return 3; + } + + // Invoke function with data range and mask + myStats->max = 10.1; + myStats->min = -15.00; + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + min = myStats->min; + if(fabs(min - expectedMinRangeWithMaskF32) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min with range with mask %lf not as expected %lf", + min, expectedMinRangeWithMaskF32); + return 3; + } + + // Invoke function with data range with no valid data + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + myStats->max = 100.00; + myStats->min = 90.00; + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if(!isnan(min)) { + psError(PS_ERR_UNKNOWN,true,"Min with range with no valid elemenets did not return NAN"); + return 4; + } + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + + return 0; +} + +psS32 testStatsMinS8(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 min = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MIN); + myVector = psVectorAlloc(N, PS_TYPE_S8); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.S8[i] = samplesS8[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if (fabs(min - expectedMinNoMaskS8) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min no mask return value %lf not as expected %lf", + min, expectedMinNoMaskS8); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsMinU16(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 min = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MAX); + myVector = psVectorAlloc(N, PS_TYPE_U16); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.U16[i] = samplesU16[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if (fabs(min - expectedMinNoMaskU16) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min no mask return value %lf not as expected %lf", + min, expectedMinNoMaskU16); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + +psS32 testStatsMinF64(void) +{ + psStats* myStats = NULL; + psVector* myVector = NULL; + psF64 min = 0.0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_MIN); + myVector = psVectorAlloc(N, PS_TYPE_F64); + myVector->n = N; + + // Set the appropriate values for the vector data. + for (psS32 i = 0; i < N; i++) { + myVector->data.F64[i] = samplesF64[i]; + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + min = myStats->min; + + if (fabs(min - expectedMinNoMaskF64) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"Min no mask return value %lf not as expected %lf", + min, expectedMinNoMaskF64); + return 1; + } + + psFree(myStats); + psFree(myVector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/math/tst_psStats03.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats03.c (revision 12167) @@ -0,0 +1,136 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_MEDIAN is correctly computed + by the procedure psVectorStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#define N1 1029 // This should be an odd number. +#define N ((4 * N1) + 1) + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorSampleMean", 0); + psTraceSetLevel("p_psVectorCheckNonEmpty", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("p_psVectorSampleMedian", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + psStats *myStats = NULL; + psS32 testStatus = true; + psS32 globalTestStatus = true; + psS32 i = 0; + psVector *myVector = NULL; + psVector *maskVector= NULL; + float median = 1e99; + float realMedianWithMask = (float) (N-3)/4; + float realMedianNoMask = (float) (N-1)/2; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); + myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + // Set the appropriate values for the vector data. + for (i=0;idata.F32[i] = (float) i; + } + + // Set the mask vector and calculate the expected median. + for (i=0;idata.U8[i] = 0; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_MEDIAN: no vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + median = myStats->sampleMedian; + + printf("Called psVectorStats() on a vector with no elements masked.\n"); + printf("The expected median was %f. The calculated median was %f.\n", + realMedianNoMask, median); + if (median == realMedianNoMask) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + + printFooter(stdout, + "psStats functions", + "PS_STAT_SAMPLE_MEDIAN: no vector mask", + testStatus); + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_MEDIAN: with vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + median = myStats->sampleMedian; + printf("Called psVectorStats() on a vector with last N/2 elements masked.\n"); + printf("The expected median was %f. The calculated median was %f.\n", + realMedianWithMask, median); + if (median == realMedianWithMask) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + + printFooter(stdout, + "psStats functions", + "PS_STAT_SAMPLE_MEDIAN: with vector mask", + testStatus); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "psStats(): deallocating memory"); + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, + "psStats functions", + "psStats(): deallocating memory", + testStatus); + + return (!globalTestStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psStats05.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats05.c (revision 12167) @@ -0,0 +1,86 @@ +/***************************************************************************** + This routine must ensure that the psStats structure is correctly + allocated and deallocated by the procedure psStatsAlloc(). + + XXX: This should be test 00. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#define MISC_FLOAT_NUMBER 345.0 + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("psStatsAlloc", 0); + + psStats *myStats = NULL; + psS32 testStatus = true; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Allocate the psStats structure."); + + myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + myStats->sampleMean = MISC_FLOAT_NUMBER; + myStats->sampleMedian = MISC_FLOAT_NUMBER; + myStats->sampleStdev = MISC_FLOAT_NUMBER; + myStats->sampleUQ = MISC_FLOAT_NUMBER; + myStats->sampleLQ = MISC_FLOAT_NUMBER; + myStats->robustMedian = MISC_FLOAT_NUMBER; + myStats->robustStdev = MISC_FLOAT_NUMBER; + myStats->robustUQ = MISC_FLOAT_NUMBER; + myStats->robustLQ = MISC_FLOAT_NUMBER; + myStats->robustN50 = MISC_FLOAT_NUMBER; + myStats->fittedMean = MISC_FLOAT_NUMBER; + myStats->fittedStdev = MISC_FLOAT_NUMBER; + myStats->fittedNfit = MISC_FLOAT_NUMBER; + myStats->clippedMean = MISC_FLOAT_NUMBER; + myStats->clippedStdev = MISC_FLOAT_NUMBER; + myStats->clippedNvalues = MISC_FLOAT_NUMBER; + myStats->clipSigma = MISC_FLOAT_NUMBER; + myStats->clipIter = MISC_FLOAT_NUMBER; + myStats->min = MISC_FLOAT_NUMBER; + myStats->max = MISC_FLOAT_NUMBER; + myStats->binsize = MISC_FLOAT_NUMBER; + myStats->nSubsample = MISC_FLOAT_NUMBER; + myStats->options = 0x0; + + psMemCheckCorruption(1); + + printFooter(stdout, + "psStats functions", + "Allocate the psStats structure.", + testStatus); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "Deallocate the psStats structure."); + psFree(myStats); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + printFooter(stdout, + "psStats functions", + "Deallocate the psStats structure.", + testStatus); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psStats06.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats06.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats06.c (revision 12167) @@ -0,0 +1,147 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_STDEV is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psTest.h" +#include "float.h" +#include + +#define N 15 + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorSampleMean", 0); + psTraceSetLevel("p_psVectorMax", 0); + psTraceSetLevel("p_psVectorMin", 0); + psTraceSetLevel("p_psVectorCheckNonEmpty", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("p_psVectorSampleStdevOLD", 0); + psTraceSetLevel("p_psVectorSampleStdev", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + psStats *myStats = NULL; + psS32 testStatus = true; + psS32 globalTestStatus = true; + psS32 i = 0; + psVector *myVector = NULL; + psVector *maskVector= NULL; + float stdev = 0.0; + // NOTE: These values were calculated by running the function on the data. + // A: They must be changed if we adjust the number of data points. + // B: We don't really know that they are correct. + float realStdevNoMask = 4.472136; + float realStdevWithMask = 2.160247; + psS32 count = 0; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_STDEV); + myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + stdev = 0.0; + // Set the appropriate values for the vector data. + for (i=0;idata.F32[i] = (float) i; + } + + // Set the mask vector and calculate the expected maximum. + for (i=0;idata.U8[i] = 0; + count++; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_STDEV: no vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + stdev = myStats->sampleStdev; + + printf("Called psVectorStats() on a vector with no elements masked.\n"); + printf("The expected stdev was %f; the calculated stdev was %f\n", + realStdevNoMask, stdev); + if (fabs(stdev - realStdevNoMask) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_STDEV: no vector mask", + testStatus); + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_STDEV: with vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + stdev = myStats->sampleStdev; + printf("Called psVectorStats() on a vector with last N/2 elements masked.\n"); + printf("The expected stdev was %f; the calculated stdev was %f\n", + realStdevWithMask, stdev); + if (fabs(stdev - realStdevWithMask) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_STDEV: with vector mask", + testStatus); + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "psStats(): deallocating memory"); + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, + "psVector functions", + "psStats(): deallocating memory", + testStatus); + + return (!globalTestStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psStats07.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats07.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats07.c (revision 12167) @@ -0,0 +1,491 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_ROBUST_QUARTILE is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. +*****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psTest.h" +#include "float.h" +#include + +#define NUM_DATA 1000 +#define MEAN 32.0 +#define STDEV 2.0 +#define PERCENT_OUTLIERS 1 +#define OUTLIER_MAGNITUDE (NUM_DATA * 10) +#define ERROR_TOLERANCE .10 +#define ERRORS 1000.0 +#define SEED 1995 +#define VERBOSE 0 + +#define TST_IN_NULL 0x00000001 +#define TST_IN_F32 0x00000002 +#define TST_IN_F64 0x00000004 +#define TST_IN_S8 0x00000008 +#define TST_IN_U16 0x00000010 +#define TST_IN_S32 0x00000020 +#define TST_ERRORS_NULL 0x00000040 +#define TST_ERRORS_F32 0x00000080 +#define TST_ERRORS_F64 0x00000100 +#define TST_ERRORS_S8 0x00000200 +#define TST_ERRORS_U16 0x00000400 +#define TST_ERRORS_S32 0x00000800 +#define TST_MASK_NULL 0x00001000 +#define TST_MASK_U8 0x00002000 +#define TST_MASK_S32 0x00004000 + +psBool genericRobustStatsTest( + unsigned int flags, + psS32 numData, + psU32 maskValue, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + psS32 memLeaks = 0; + psVector *in = NULL; + psVector *errors = NULL; + psVector *mask = NULL; + srand(SEED); + printPositiveTestHeader(stdout, "psMathUtils functions", "psVectorStats Robust Stats Routine"); + + if (expectedRC == true) { + printf("This test should not generate any errors.\n"); + } + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + psVector *gaussVector = p_psGaussianDev(MEAN, STDEV, numData); + + + if (flags & TST_IN_NULL) { + printf(" using a NULL in vector\n"); + } + + if (flags & TST_IN_F32) { + printf(" using a psF32 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = gaussVector->data.F32[i]; + in->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TST_IN_F64) { + printf(" using a psF64 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = (psF64) gaussVector->data.F32[i]; + in->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TST_IN_S8) { + printf(" using a psS8 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) gaussVector->data.F32[i]; + in->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + + if (flags & TST_IN_U16) { + printf(" using a psU16 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) gaussVector->data.F32[i]; + in->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + + if (flags & TST_IN_S32) { + printf(" using a psS32 in vector\n"); + in = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) gaussVector->data.F32[i]; + in->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + psFree(gaussVector); + + // in->n = in->nalloc; + if (flags & TST_ERRORS_NULL) { + printf(" using a NULL errors vector\n"); + } + + if (flags & TST_ERRORS_F32) { + printf(" using a psF32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = ERRORS; + errors->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + + if (flags & TST_ERRORS_F64) { + printf(" using a psF64 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = ERRORS; + errors->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + + if (flags & TST_ERRORS_S8) { + printf(" using a psS8 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) ERRORS; + errors->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + + if (flags & TST_ERRORS_U16) { + printf(" using a psU16 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) ERRORS; + errors->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + + if (flags & TST_ERRORS_S32) { + printf(" using a psS32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) ERRORS; + errors->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + + if (flags & TST_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TST_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + for (psS32 i=0;idata.U8[i] = (psU8) 0; + mask->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.U8[i]); + } + } + } + + if (flags & TST_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) 0; + mask->n++; + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + + // + // We calculate the sample mean and stdev without and outliers in the data. + // We will use this later in determining if the clipped stats are correct. + // + psF32 sampleMean; + psF32 sampleStdev; + psF32 sampleMedian; + psF32 sampleLQ; + psF32 sampleUQ; + if (expectedRC == true) { + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV | PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_QUARTILE); + psStats *rc = psVectorStats(myStats, in, NULL, NULL, maskValue); + if (rc == NULL) { + printf("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } else { + sampleMean = myStats->sampleMean; + sampleStdev = myStats->sampleStdev; + sampleMedian = myStats->sampleMedian; + sampleLQ = myStats->sampleLQ; + sampleUQ = myStats->sampleUQ; + } + psFree(myStats); + } + + // + // We add a few outliers to the input data. + // + if (flags & TST_IN_F32) { + for (psS32 i=0;i (random() % 100)) { + in->data.F32[i] = (psF32) OUTLIER_MAGNITUDE; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + if (flags & TST_IN_F64) { + for (psS32 i=0;i (random() % 100)) { + in->data.F64[i] = (psF64) OUTLIER_MAGNITUDE; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + if (flags & TST_IN_S8) { + for (psS32 i=0;i (random() % 100)) { + in->data.S8[i] = (psS8) OUTLIER_MAGNITUDE; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + if (flags & TST_IN_U16) { + for (psS32 i=0;i (random() % 100)) { + in->data.U16[i] = (psU16) OUTLIER_MAGNITUDE; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + if (flags & TST_IN_S32) { + for (psS32 i=0;i (random() % 100)) { + in->data.S32[i] = (psS32) OUTLIER_MAGNITUDE; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + // + // We call psVectorStats() and calculate the clipped stats. + // + psStats *myStats = psStatsAlloc( + PS_STAT_ROBUST_MEDIAN | + PS_STAT_ROBUST_STDEV | + PS_STAT_ROBUST_QUARTILE | + PS_STAT_FITTED_MEAN | + PS_STAT_FITTED_STDEV); + psStats *rc = psVectorStats(myStats, in, errors, mask, maskValue); + + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the psVectorStats() function returned non-NULL.\n"); + testStatus = false; + } + + // + // Fitted Mean + // + if (fabs(myStats->fittedMean - sampleMean) > (ERROR_TOLERANCE * sampleMean)) { + printf("TEST ERROR: the fitted mean was %.2f, should have been %.2f\n", myStats->fittedMean, sampleMean); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the fitted mean was %.2f, should have been %.2f\n", myStats->fittedMean, sampleMean); + } + + // + // Fitted Stdev + // + if (fabs(myStats->fittedStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + printf("TEST ERROR: the fitted stdev was %.2f, should have been %.2f\n", myStats->fittedStdev, sampleStdev); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the fitted stdev was %.2f, should have been %.2f\n", myStats->fittedStdev, sampleStdev); + } + + // + // Robust Stdev + // + if (fabs(myStats->robustStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + printf("TEST ERROR: the robust stdev was %.2f, should have been %.2f\n", myStats->robustStdev, sampleStdev); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the robust stdev was %.2f, should have been %.2f\n", myStats->robustStdev, sampleStdev); + } + + // + // Robust Median + // + if (fabs(myStats->robustMedian - sampleMedian) > (ERROR_TOLERANCE * sampleMedian)) { + printf("TEST ERROR: the robust median was %.2f, should have been %.2f\n", myStats->robustMedian, sampleMedian); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the robust median was %.2f, should have been %.2f\n", myStats->robustMedian, sampleMedian); + } + + // + // Robust LQ + // + if (fabs(myStats->robustLQ - sampleLQ) > (ERROR_TOLERANCE * sampleLQ)) { + printf("TEST ERROR: the robust LQ was %.2f, should have been %.2f\n", myStats->robustLQ, sampleLQ); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the robust LQ was %.2f, should have been %.2f\n", myStats->robustLQ, sampleLQ); + } + + // + // Robust UQ + // + if (fabs(myStats->robustUQ - sampleUQ) > (ERROR_TOLERANCE * sampleUQ)) { + printf("TEST ERROR: the robust UQ was %.2f, should have been %.2f\n", myStats->robustUQ, sampleUQ); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the robust UQ was %.2f, should have been %.2f\n", myStats->robustUQ, sampleUQ); + } + } + + psFree(myStats); + psFree(in); + psFree(errors); + psFree(mask); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return(testStatus); +} + + +psS32 main() +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + psBool testStatus = true; + // + // We list pertinent psStats.c functions here for debugging ease. + // + #define TRACE_LEVEL 0 + + psTraceSetLevel(".", TRACE_LEVEL); + psTraceSetLevel("psGaussian", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMax", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMin", TRACE_LEVEL); + psTraceSetLevel("p_psVectorCheckNonEmpty", TRACE_LEVEL); + psTraceSetLevel("p_psNormalizeVectorRange", TRACE_LEVEL); + psTraceSetLevel("p_ps1DPolyMedian", TRACE_LEVEL); + psTraceSetLevel("fitQuadraticSearchForYThenReturnX", TRACE_LEVEL); + psTraceSetLevel("PsVectorDup", TRACE_LEVEL); + psTraceSetLevel("psMinimizeLMChi2Gauss1D", TRACE_LEVEL); + psTraceSetLevel("LinInterpolate", TRACE_LEVEL); + psTraceSetLevel("p_psVectorRobustStats", TRACE_LEVEL); + psTraceSetLevel("psStatsAlloc", TRACE_LEVEL); + psTraceSetLevel("psHistogramAlloc", TRACE_LEVEL); + psTraceSetLevel("psHistogramAllocGeneric", TRACE_LEVEL); + psTraceSetLevel("UpdateHistogramBins", TRACE_LEVEL); + psTraceSetLevel("psVectorHistogram", TRACE_LEVEL); + psTraceSetLevel("p_psConvertToF32", TRACE_LEVEL); + psTraceSetLevel("psVectorStats", TRACE_LEVEL); + + testStatus &= genericRobustStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true); + testStatus &= genericRobustStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_U8, NUM_DATA, 1, true); + + if (testStatus) { + printf("TEST PASSED.\n"); + } else { + printf("TEST FAILED.\n"); + } +} + Index: /branches/rel-1-1/psLib/test/math/tst_psStats08.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats08.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats08.c (revision 12167) @@ -0,0 +1,190 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_SAMPLE_QUARTILE is correctly computed + by the procedure psArrayStats(). + + XXX: Must add tests for various data types, other than psF32. Copy code + from tst_psStats00.c-tst_psStats02.c. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psTest.h" +#include "float.h" +#include + +#define N1 25 // +#define N (8 * N1) // Don't change this (N must be a multiple of 8) + +psS32 main() +{ + psLogSetFormat("HLNM"); + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("p_psVectorMax", 0); + psTraceSetLevel("p_psVectorMin", 0); + psTraceSetLevel("p_psVectorCheckNonEmpty", 0); + psTraceSetLevel("p_psVectorNValues", 0); + psTraceSetLevel("p_psVectorSampleQuartiles", 0); + psTraceSetLevel("psStatsAlloc", 0); + psTraceSetLevel("p_psConvertToF32", 0); + psTraceSetLevel("psVectorStats", 0); + + + psStats *myStats = NULL; + psS32 testStatus = true; + psS32 globalTestStatus = true; + psS32 i = 0; + psVector *myVector = NULL; + psVector *maskVector= NULL; + // NOTE: These values were calculated by running the function on the data. + // A: They must be changed if we adjust the number of data points. + // B: We don't really know that they are correct. + float realLQNoMask = N/4.0; + float realUQNoMask = 3.0 * (N/4.0); + float realLQWithMask = N/8.0; + float realUQWithMask = 3.0 * (N/8.0); + psS32 count = 0; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + + /*************************************************************************/ + /* Allocate and initialize data structures */ + /*************************************************************************/ + myStats = psStatsAlloc(PS_STAT_SAMPLE_QUARTILE); + myVector = psVectorAlloc(N, PS_TYPE_F32); + myVector->n = N; + maskVector = psVectorAlloc(N, PS_TYPE_U8); + maskVector->n = N; + + // Set the appropriate values for the vector data. + for (i=0;idata.F32[i] = (float) i; + } + + // Set the mask vector and calculate the expected maximum. + for (i=0;idata.U8[i] = 0; + count++; + } else { + maskVector->data.U8[i] = 1; + } + } + + /*************************************************************************/ + /* Call psVectorStats() with no vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_LQ: no vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + + printf("Called psVectorStats() on a vector with no elements masked.\n"); + printf("The expected sampleLQ was %f; the calculated sampleLQ was %f\n", + realLQNoMask, myStats->sampleLQ); + if (fabs(realLQNoMask - myStats->sampleLQ) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_LQ: no vector mask", + testStatus); + + + + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_UQ: no vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, NULL, 0); + + printf("Called psVectorStats() on a vector with no elements masked.\n"); + printf("The expected sampleUQ was %f; the calculated sampleUQ was %f\n", + realUQNoMask, myStats->sampleUQ); + if (fabs(realUQNoMask - myStats->sampleUQ) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_UQ: no vector mask", + testStatus); + + /*************************************************************************/ + /* Call psVectorStats() with vector mask. */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_LQ: with vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + + printf("Called psVectorStats() on a vector with elements masked.\n"); + printf("The expected sampleLQ was %f; the calculated sampleLQ was %f\n", + realLQWithMask, myStats->sampleLQ); + if (fabs(realLQWithMask - myStats->sampleLQ) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_LQ: with vector mask", + testStatus); + + + + printPositiveTestHeader(stdout, + "psStats functions", + "PS_STAT_SAMPLE_UQ: with vector mask"); + + myStats = psVectorStats(myStats, myVector, NULL, maskVector, 1); + + printf("Called psVectorStats() on a vector with elements masked.\n"); + printf("The expected sampleUQ was %f; the calculated sampleUQ was %f\n", + realUQWithMask, myStats->sampleUQ); + if (fabs(realUQWithMask - myStats->sampleUQ) <= 2.0 * FLT_EPSILON) { + testStatus = true; + } else { + testStatus = false; + globalTestStatus = false; + } + printFooter(stdout, + "psVector functions", + "PS_STAT_SAMPLE_UQ: with vector mask", + testStatus); + + + /*************************************************************************/ + /* Deallocate data structures */ + /*************************************************************************/ + printPositiveTestHeader(stdout, + "psStats functions", + "psStats(): deallocating memory"); + + psFree(myStats); + psFree(myVector); + psFree(maskVector); + + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + printFooter(stdout, + "psVector functions", + "psStats(): deallocating memory", + testStatus); + + return (!globalTestStatus); +} Index: /branches/rel-1-1/psLib/test/math/tst_psStats09.c =================================================================== --- /branches/rel-1-1/psLib/test/math/tst_psStats09.c (revision 12167) +++ /branches/rel-1-1/psLib/test/math/tst_psStats09.c (revision 12167) @@ -0,0 +1,359 @@ +/***************************************************************************** + This routine must ensure that PS_STAT_CLIPPED_MEAN and + PS_STAT_CLIPPED_STDEV is calculate correctly by the procedure + psVectorStats(). + + XXX: The capability is here to test a wide variety of input parameters. + We must do this, later. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "float.h" +#include + +#define NUM_DATA 1000 +#define VERBOSE 1 +#define PERCENT_OUTLIERS 2 +#define ERROR_TOLERANCE .10 +#define ERRORS 1.0 +#define SEED 1995 + +#define TST_IN_NULL 0x00000001 +#define TST_IN_F32 0x00000002 +#define TST_IN_F64 0x00000004 +#define TST_IN_S8 0x00000008 +#define TST_IN_U16 0x00000010 +#define TST_IN_S32 0x00000020 +#define TST_ERRORS_NULL 0x00000040 +#define TST_ERRORS_F32 0x00000080 +#define TST_ERRORS_F64 0x00000100 +#define TST_ERRORS_S8 0x00000200 +#define TST_ERRORS_U16 0x00000400 +#define TST_ERRORS_S32 0x00000800 +#define TST_MASK_NULL 0x00001000 +#define TST_MASK_U8 0x00002000 +#define TST_MASK_S32 0x00004000 + + +psBool genericClippedStatsTest( + unsigned int flags, + psS32 numData, + psU32 maskValue, + psBool expectedRC) +{ + psS32 currentId = psMemGetId(); + psBool testStatus = true; + psS32 memLeaks = 0; + psVector *in = NULL; + psVector *errors = NULL; + psVector *mask = NULL; + srand(SEED); + printPositiveTestHeader(stdout, "psMathUtils functions", "psVectorStats Clipped Stats Routine"); + + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 1); // Random number generator; using known seed + psVector *truth = psVectorAlloc(numData, PS_TYPE_F64); + truth->n = numData; + for (long i = 0; i < numData; i++) { + truth->data.F64[i] = psRandomGaussian(rng); + } + psFree(rng); + + if (expectedRC == true) { + printf("This test should not generate any errors.\n"); + } + if (expectedRC == false) { + printf("This test should generate an error message, and return NULL.\n"); + } + + if (flags & TST_IN_NULL) { + printf(" using a NULL in vector\n"); + } + + if (flags & TST_IN_F32) { + printf(" using a psF32 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_F32); + } + + if (flags & TST_IN_F64) { + printf(" using a psF64 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_F64); + } + + if (flags & TST_IN_S8) { + printf(" using a psS8 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_S8); + } + + if (flags & TST_IN_U16) { + printf(" using a psU16 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_U16); + } + + if (flags & TST_IN_S32) { + printf(" using a psS32 in vector\n"); + in = psVectorCopy(in, truth, PS_TYPE_S32); + } + + if (flags & TST_ERRORS_NULL) { + printf(" using a NULL errors vector\n"); + } + + if (flags & TST_ERRORS_F32) { + printf(" using a psF32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F32); + for (psS32 i=0;idata.F32[i] = ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_F64) { + printf(" using a psF64 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_F64); + for (psS32 i=0;idata.F64[i] = ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_S8) { + printf(" using a psS8 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S8); + for (psS32 i=0;idata.S8[i] = (psS8) ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_U16) { + printf(" using a psU16 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_U16); + for (psS32 i=0;idata.U16[i] = (psU16) ERRORS; + errors->n++; + } + } + + if (flags & TST_ERRORS_S32) { + printf(" using a psS32 errors vector\n"); + errors = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) ERRORS; + errors->n++; + } + } + + + if (flags & TST_MASK_NULL) { + printf(" using a NULL mask vector\n"); + } + + if (flags & TST_MASK_U8) { + printf(" using a psU8 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_U8); + for (psS32 i=0;idata.U8[i] = (psU8) 0; + mask->n++; + } + } + + if (flags & TST_MASK_S32) { + printf(" using a psS32 mask vector\n"); + mask = psVectorAlloc(numData, PS_TYPE_S32); + for (psS32 i=0;idata.S32[i] = (psS32) 0; + mask->n++; + } + } + + + // + // We add a few outliers to the input data. + // + psVector *outliers = psVectorAlloc(numData, PS_TYPE_U8); + outliers->n = numData; + psVectorInit(outliers, 0); + long numOutliers = 0; + if (flags & TST_IN_F32) { + for (psS32 i=0;i (random() % 100)) { + in->data.F32[i] = 100.0; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.F32[i]); + } + } + } + if (flags & TST_IN_F64) { + for (psS32 i=0;i (random() % 100)) { + in->data.F64[i] = 100.0; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.F64[i]); + } + } + } + if (flags & TST_IN_S8) { + for (psS32 i=0;i (random() % 100)) { + in->data.S8[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.S8[i]); + } + } + } + if (flags & TST_IN_U16) { + for (psS32 i=0;i (random() % 100)) { + in->data.U16[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.U16[i]); + } + } + } + if (flags & TST_IN_S32) { + for (psS32 i=0;i (random() % 100)) { + in->data.S32[i] = 100; + outliers->data.U8[i] = 1; + numOutliers++; + } + } + + if (VERBOSE) { + for (psS32 i=0;idata.S32[i]); + } + } + } + + printf("%ld outliers.\n", numOutliers); + + // + // We calculate the sample mean and stdev without and outliers in the data. + // We will use this later in determining if the clipped stats are correct. + // + psF32 sampleMean; + psF32 sampleStdev; + if (expectedRC == true) { + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psStats *rc = psVectorStats(myStats, in, errors, outliers, 1); + if (rc == NULL) { + printf("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } else { + sampleMean = myStats->sampleMean; + sampleStdev = myStats->sampleStdev; + } + psFree(myStats); + } + psFree(outliers); + + // + // We call psVectorStats() and calculate the clipped stats. + // + psStats *myStats = psStatsAlloc(PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + myStats->clipSigma = 5.0; + myStats->clipIter = 2; + psStats *rc = psVectorStats(myStats, in, errors, mask, maskValue); + if (rc == NULL) { + if (expectedRC == true) { + printf("TEST ERROR: the psVectorStats() function returned NULL.\n"); + testStatus = false; + } + } else { + if (expectedRC == false) { + printf("TEST ERROR: the psVectorStats() function returned non-NULL.\n"); + testStatus = false; + } + + printf("Used %ld data points after clipping %ld.\n", myStats->clippedNvalues, + in->n - myStats->clippedNvalues); + + if (fabs(myStats->clippedMean - sampleMean) > (ERROR_TOLERANCE * sampleMean)) { + printf("TEST ERROR: the clipped mean was %f, should have been %f\n", myStats->clippedMean, sampleMean); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the clipped mean was %f, should have been %f\n", myStats->clippedMean, sampleMean); + } + + if (fabs(myStats->clippedStdev - sampleStdev) > (ERROR_TOLERANCE * sampleStdev)) { + printf("TEST ERROR: the clipped stdev was %f, should have been %f\n", myStats->clippedStdev, sampleStdev); + testStatus = false; + } else if (VERBOSE) { + printf("GOOD: the clipped stdev was %f, should have been %f\n", myStats->clippedStdev, sampleStdev); + } + + } + + psFree(myStats); + psFree(truth); + psFree(in); + psFree(errors); + psFree(mask); + psMemCheckCorruption(1); + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + + return(testStatus); +} + +#define TRACE_LEVEL 0 +psS32 main() +{ + psLogSetFormat("HLNM"); + psBool testStatus = true; + + // + // We list pertinent psStats.c functions here for debugging ease. + // + psTraceSetLevel(".", TRACE_LEVEL); + psTraceSetLevel("p_psVectorSampleMean", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMax", TRACE_LEVEL); + psTraceSetLevel("p_psVectorMin", TRACE_LEVEL); + psTraceSetLevel("p_psVectorCheckNonEmpty", TRACE_LEVEL); + psTraceSetLevel("p_psVectorNValues", TRACE_LEVEL); + psTraceSetLevel("p_psVectorClippedStats", TRACE_LEVEL); + psTraceSetLevel("p_psNormalizeVectorRange", TRACE_LEVEL); + psTraceSetLevel("psStatsAlloc", TRACE_LEVEL); + psTraceSetLevel("p_psConvertToF32", TRACE_LEVEL); + psTraceSetLevel("psVectorStats", TRACE_LEVEL); + + testStatus &= genericClippedStatsTest(TST_IN_NULL | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, false); + testStatus &= genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true); + testStatus &= genericClippedStatsTest(TST_IN_F64 | TST_ERRORS_NULL | TST_MASK_NULL, NUM_DATA, 1, true); + testStatus &= genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_F32 | TST_MASK_NULL, NUM_DATA, 1, true); + testStatus &= genericClippedStatsTest(TST_IN_F32 | TST_ERRORS_NULL | TST_MASK_U8, NUM_DATA, 1, true); + + if (testStatus) { + printf("TEST PASSED\n"); + } else { + printf("TEST FAILED\n"); + } +} Index: /branches/rel-1-1/psLib/test/mathtypes/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/.cvsignore (revision 12167) @@ -0,0 +1,18 @@ +temp +.deps +.libs +Makefile +Makefile.in +tst_psImage +tst_psScalar +tst_psVector +tst_psVectorSort_01 +tst_psVectorSort_02 +tst_psVectorSort_03 +tst_psVectorSort_04 +tap_psVector +*.bb +*.bbg +*.da +gmon.out +tap_psImageInterpolate Index: /branches/rel-1-1/psLib/test/mathtypes/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/Makefile.am (revision 12167) @@ -0,0 +1,34 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/src/mathtypes \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psScalar \ + tap_psImage \ + tap_psImageInterpolate \ + tap_psVectorSort_01 \ + tap_psVectorSort_02 \ + tap_psVectorSort_03 \ + tap_psVectorSort_04 \ + tap_psVector + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psImage.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psImage.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psImage.c (revision 12167) @@ -0,0 +1,587 @@ +/** @file tst_psImage.c + * + * @brief Contains the tests for psImage.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-30 00:52:07 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include + +#include "pslib.h" +#include "psType.h" + +#include "tap.h" +#include "pstap.h" + + +//static int Okay = 1; +//static int setOkay( int okay ) +//{ +// Okay = okay; +// return okay; +//} + +#define OK(exp) \ +exp ? setOkay(1) : setOkay(0) + +#define RET_OK \ +if ( ! Okay ) { \ + psFree(image); \ + return; \ +} + + + +int main(int argc, char* argv[]) +{ + plan_tests(383); + + void testImageAlloc(void); + testImageAlloc(); + + void testRegion(void); + testRegion(); + + void testRegion2(void); + testRegion2(); + + void testRegion3(void); + testRegion3(); + + void testImageInit(void); + testImageInit(); + + void testImageSet(void); + testImageSet(); +} + + +void testImageAlloc() +{ + diag("testImageAlloc"); + + psImage* image = NULL; + psU32 sizes = 6; + psU32 numCols[] = { + 0,1,1,100,100,150 + }; + psU32 numRows[] = { + 0,1,100,1,150,100 + }; + psU32 types = 12; + psElemType type[] = { PS_TYPE_S8, PS_TYPE_S16, PS_TYPE_S32, PS_TYPE_S64, + PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_U32, PS_TYPE_U64, + PS_TYPE_F32, PS_TYPE_F64, PS_TYPE_C32, PS_TYPE_C64}; + + for (psU32 t=0;ttype.dimen==PS_DIMEN_IMAGE && image->type.type==type[t], + "psImageAlloc allocated dimen/type (%d/%d), expecting " + "PS_IMAGE_DIMEN/%d", image->type.dimen, + image->type.type, type[t]); + skip_start (!(image->type.dimen==PS_DIMEN_IMAGE && image->type.type==type[t]), + 4, "psImageAlloc allocated wrong dimen/type"); + + ok (image->numCols == numCols[i] && image->numRows == numRows[i], + "psImageAlloc allocated size %dx%d, expecting be %dx%d " + "(type = %d)", image->numCols, image->numRows, numCols[i], + numRows[i],type[t]); + skip_start (!(image->numCols == numCols[i] && image->numRows == numRows[i]), + 3, "psImageAlloc allocated wrong size"); + + ok (image->col0 == 0 && image->row0 == 0, + "psImageAlloc returned row0/col0 of %d/%d. Expected 0/0.", + image->row0, image->row0); + skip_start (!(image->col0 == 0 && image->row0 == 0), + 2, "psImageAlloc returned wrong row0/col0"); + + ok (image->parent == NULL, "psImageAlloc returned NULL parent"); + skip_start (image->parent != NULL, + 1, "psImageAlloc returned NULL parent"); + + ok (image->children == NULL, + "psImageAlloc returned NULL children array"); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + if (image->children != NULL) { + psFree(image); + return; + } + + switch (type[t]) { + case PS_TYPE_U16: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.U16[r][c] = 2*c+r; + } + } + bool errorFlag = false; + for (psS32 r=0;rdata.U16[r][c] != 2*c+r) { + diag("ERROR: Could not set all pixels in uint16 image at (%d,%d)",c,r); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageAlloc() set data correctly (U16)"); + } + break; + case PS_TYPE_F32: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.F32[r][c] = 2.0f*c+r; + } + } + bool errorFlag = false; + for (psS32 r=0;rdata.F32[r][c] - (2.0f*c+r)) > FLT_EPSILON) { + diag("Could not set all pixels in float image at (%d,%d)",c,r); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageAlloc() set data correctly (F32)"); + } + break; + case PS_TYPE_F64: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.F64[r][c] = 2.0f*c+r; + } + } + bool errorFlag = false; + for (psS32 r=0;rdata.F64[r][c] - (2.0f*c+r)) > DBL_EPSILON) { + diag("Set all pixels in double image at (%d,%d)",c,r); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageAlloc() set data correctly (F64)"); + } + break; + case PS_TYPE_C32: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.C32[r][c] = r + I * c; + } + } + bool errorFlag = false; + for (psS32 r=0;rdata.C32[r][c]) - r) > FLT_EPSILON || + fabsf(cimagf(image->data.C32[r][c]) - c) > FLT_EPSILON) { + diag("Set all pixels in complex image at (%d,%d)",c,r); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageAlloc() set data correctly (C32)"); + } + break; + default: { + // ignore type and just use as byte bucket. + psU32 rows = numRows[i]; + psU32 cols = numCols[i]*PSELEMTYPE_SIZEOF(type[t]); + + for (psS32 r=0;rdata.U8[r][c] = (uint8_t)(r + c); + } + } + bool errorFlag = false; + for (psS32 r=0;rdata.U8[r][c] != (uint8_t)(r + c)) { + diag("Set all pixels in image (type=%d) at (%d,%d)", + type[t],c,r); + errorFlag = true; + } + } + } + ok(!errorFlag, "psImageAlloc() set data correctly (default)"); + } + } + psFree(image); + } + } + + // #548: Verify no memory leaks or corruption are detected after a valid psImage structure with multiple + // children is freed. + image = psImageAlloc(100,100,PS_TYPE_F32); + psImageSubset(image,(psRegion) { + 50,0,70,20 + } + ); + psImageSubset(image,(psRegion) { + 70,20,90,40 + } + ); + + psFree(image); +} + + + +void testRegion() +{ + // Testpoint #790 + + diag("testRegion"); + + psRegion region = psRegionSet(1,2,3,4); + ok (!(region.x0 != 1 || region.x1 != 2 || region.y0 != 3 || region.y1 != 4), + "The region attributes are set to (%s)", psRegionToString(region)); + + // Testpoint #791 + + region = psRegionFromString("[1:2,3:4]"); + ok (!(region.x0 != 0 || region.x1 != 2 || region.y0 != 2 || region.y1 != 4), + "The region attributes are set to (%s)", psRegionToString(region)); + + region = psRegionFromString("[1:2,3:]"); + ok (isnan(region.x0), + "psRegionFromString returned a NULL pointer given a malformed string."); +} + + +//psRegionForImage// +void testRegion2() +{ + diag("testRegion2"); + + psImage *in; + psRegion inReg; + psRegion out; + in = psImageAlloc(1, 1, PS_TYPE_S32); + inReg = psRegionSet(1, 2, 1, 2); + out = psRegionForImage(in,inReg); + psRegion inReg2; + psRegion out2; + inReg2 = psRegionSet(-1, 0, -2, -1); + out2 = psRegionForImage(in, inReg2); + + ok(!( out.x0 != 1 || out.x1 != 1 || out.y0 != 1 || out.y1 != 1 ), + "Region For Image returned correct values.\n"); + + ok(!( out2.x0 != 0 || out2.x1 != 1 || out2.y0 != 0 || out2.y1 != 0 ), + "Region For Image returned correct values.\n"); + + psFree(in); +} + + +//psRegionForSquare// +void testRegion3() +{ + diag("testRegion3"); + + float X = 1; + float Y = 1; + float RAD = 1; + psRegion out; + out = psRegionForSquare(X, Y, RAD); + ok (!(out.x0 != 0 || out.x1 != 3 || out.y0 != 0 || out.y1!= 3), + "Region For Square returned correct values.\n"); +} + + +//Initialize an image with a given value.// +void testImageInit() +{ + diag("testImageInit"); + + psImage *in1 = NULL; + psImage *in2 = NULL; + psImage *in3 = NULL; + psImage *in4 = NULL; + int nRow = 1; + int nCol = 1; + in1 = psImageAlloc(nRow, nCol, PS_TYPE_U8); + ok ( psImageInit(in1, -1 ), + "ImageAlloc. U8 Case - 1x1\n"); + + nRow = 5; + in2 = psImageAlloc(nRow, nCol, PS_TYPE_F32); + ok ( psImageInit(in2, 3), + "ImageAlloc. F32 Case - 5x1\n"); + + nCol = 5; + in3 = psImageAlloc(nRow, nCol, PS_TYPE_F64); + ok ( psImageInit(in3, 3.141), + "ImageAlloc. F64 Case - 5x5\n"); + + in4 = psImageAlloc(nRow, nCol, PS_TYPE_S32); + ok ( psImageInit(in4, 3), + "ImageAlloc. S32 Case - 5x5\n"); + + psFree(in1); + psFree(in2); + psFree(in3); + psFree(in4); +} + + +void testImageSet() +{ + diag("testImageSet"); + + psImage *image = NULL; + image = psImageAlloc(5, 4, PS_TYPE_S32); + + //Set the position of the subimage relative to the parent. + image->col0 = 10; + image->row0 = 10; + for (int i = 0; i < 4; i++) { + for (int j = 0; j < 5; j++) { + image->data.S32[i][j] = i+j; + } + } + + //Attempt to set a position in a NULL psImage* + psImage *none = NULL; + ok (! psImageSet(none, 1, 1, 1), + "psImageSet returned non-null.\n"); + skip_start ( psImageSet(none, 1, 1, 1), + 12, "psImageSet failed"); + + //Attempt to set a position in a psImage* with negative numCols, numRows + none = psImageAlloc(2, 2, PS_TYPE_S32); + *(int*)&none->numCols = -1; + ok (! psImageSet(none, 1, 1, 1), + "psImageSet return false when passed an image with negative numCols"); + skip_start ( psImageSet(none, 1, 1, 1), + 11,"psImageSet return true when passed an image with negative numCols"); + + *(int*)&none->numCols = 2; + *(int*)&none->numRows = -1; + ok ( !psImageSet(none, 1, 1, 1), + "psImageSet failed to return false when passed an image with negative numRows.\n"); + skip_start ( psImageSet(none, 1, 1, 1), + 10,"psImageSet return true when passed an image with negative numRows."); + + //Attempt to set a position in a psImage* with negative col0, row0 + *(int*)&none->numRows = 2; + none->row0 = -1; + ok ( !psImageSet(none, 1, 1, 1), + "psImageSet failed to return false when passed an image with negative col0.\n"); + skip_start ( psImageSet(none, 1, 1, 1), + 9,"psImageSet return true when passed an image with negative col0.\n"); + + none->row0 = 0; + none->col0 = -1; + ok ( !psImageSet(none, 1, 1, 1), + "psImageSet failed to return false when passed an image with negative col0.\n"); + skip_start ( psImageSet(none, 1, 1, 1), + 8,"psImageSet return true when passed an image with negative col0.\n"); + + psFree(none); + + //Try to set a position inside of the subimage. + ok ( psImageSet(image, 14, 12, 666), + "psImageSet failed to return true when passed valid parameters.\n"); + skip_start ( !psImageSet(image, 14, 12, 666), + 7,"psImageSet failed to return true when passed valid parameters.\n"); + + ok (image->data.S32[2][4] == 666, + "psImageSet set the data value. value=%d\n", image->data.S32[2][4]); + skip_start (image->data.S32[2][4] != 666, + 6,"psImageSet set the data value. value=%d\n", image->data.S32[2][4]); + + //Try to set a position inside of the subimage from the tail. + ok ( psImageSet(image, -1, -1, 666), + "psImageSet return true when passed valid parameters.\n"); + skip_start ( !psImageSet(image, -1, -1, 666), + 5,"psImageSet failed to return true when passed valid parameters.\n"); + + ok (image->data.S32[3][4] == 666, + "psImageSet set (from the tail) the data values correctly.\n"); + skip_start (image->data.S32[3][4] != 666, + 4,"psImageSet set (from the tail) the data values incorrectly.\n"); + + + //Try to set a position outside of the subimage but inside of the parent image. + ok ( !psImageSet(image, 0, 0, 666), + "psImageSet return false when passed an invalid location.\n"); + skip_start ( psImageSet(image, 0, 0, 666), + 3,"psImageSet failed to return false when passed an invalid location"); + + ok ( !psImageSet(image, 9, 10, 666), + "psImageSet return false when passed an invalid location.\n"); + skip_start ( psImageSet(image, 9, 10, 666), + 2,"psImageSet return false when passed an invalid location.\n"); + + //Try to set a position outside of the subimage. + ok ( !psImageSet(image, 15, 14, 666), + "psImageSet return false when passed an invalid location.\n"); + skip_start ( psImageSet(image, 15, 14, 666), + 1,"psImageSet failed to return false when passed an invalid location"); + + //Try to set a position outside of the subimage, indexing from the tail. + ok ( !psImageSet(image, -6, -1, 666), + "psImageSet return false when passed an invalid location.\n"); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + psFree(image); +} + + +void testImageGet() +{ + diag("testImageGet"); + + psImage *image = NULL; + image = psImageAlloc(5, 3, PS_TYPE_S32); + + //Set the position of the subimage relative to the parent. + image->col0 = 10; + image->row0 = 10; + for (int i = 0; i < 3; i++) { + for (int j = 0; j < 5; j++) { + image->data.S32[i][j] = i+j; + } + } + + //Attempt to get a position in a NULL psImage* + psImage *none = NULL; + ok ( isnan( psImageGet(none, 1, 1) ), + "psImageGet return false when passed a NULL image.\n"); + skip_start ( !isnan( psImageGet(none, 1, 1) ), + 10,"psImageGet failed to return false when passed a NULL image.\n"); + + //Attempt to get a position in a psImage* with negative numCols, numRows + none = psImageAlloc(2, 2, PS_TYPE_S32); + *(int*)&none->numCols = -1; + ok ( isnan( psImageGet(none, 1, 1) ), + "psImageGet return false when passed an image with negative numCols"); + skip_start ( !isnan( psImageGet(none, 1, 1) ), + 9,"psImageGet return true when passed an image with negative numCols"); + + *(int*)&none->numCols = 2; + *(int*)&none->numRows = -1; + ok ( isnan( psImageGet(none, 1, 1) ), + "psImageGet return false when passed an image with negative numRows"); + skip_start ( !isnan( psImageGet(none, 1, 1) ), + 8,"psImageGet failed to return false when passed an image with negative numRows.\n"); + + //Attempt to get a position in a psImage* with negative col0, row0 + *(int*)&none->numRows = 2; + none->row0 = -1; + ok ( isnan( psImageGet(none, 1, 1) ), + "psImageGet return false when passed an image with negative col0.\n"); + skip_start ( !isnan( psImageGet(none, 1, 1) ), + 7,"psImageGet return false when passed an image with negative col0.\n"); + + none->row0 = 0; + none->col0 = -1; + ok ( isnan( psImageGet(none, 1, 1) ), + "psImageGet return false when passed an image with negative col0.\n"); + skip_start ( !isnan( psImageGet(none, 1, 1) ), + 6,"psImageGet failed to return false when passed an image with negative col0.\n"); + + psFree(none); + + + //Try to get a position inside of the subimage. + ok ( psImageGet(image, 14, 12) == 6, + "psImageGet return the correct value.\n"); + skip_start ( psImageGet(image, 14, 12) != 6, + 5,"psImageGet failed to return the correct value.\n"); + + //Try to get a position inside of the subimage from the tail. + ok ( psImageGet(image, -1, -1) == 6, + "psImageGet return the correct value.\n"); + skip_start ( psImageGet(image, -1, -1) == 6, + 4, "psImageGet failed to return the correct value.\n"); + + //Try to get a position outside of the subimage but inside of the parent image. + ok ( isnan( psImageGet(image, 1, 1) ), + "psImageGet return NAN when passed an invalid location.\n"); + skip_start ( !isnan( psImageGet(image, 1, 1) ), + 3, "psImageGet didn't return NAN when passed an invalid location.\n"); + + ok ( isnan( psImageGet(image, 9, 10) ), + "psImageGet return NAN when passed an invalid location.\n"); + skip_start ( ! isnan( psImageGet(image, 9, 10) ), + 2,"psImageGet failed to return NAN when passed an invalid location.\n"); + + //Try to set a position outside of the subimage. + ok ( isnan( psImageGet(image, 15, 14) ), + "psImageGet return NAN when passed an invalid location.\n"); + skip_start ( !isnan( psImageGet(image, 15, 14) ), + 1, "psImageGet didn't return NAN when passed an invalid location.\n"); + + //Try to set a position outside of the subimage, indexing from the tail. + ok ( isnan( psImageGet(image, -6, -1) ), + "psImageGet failed to return NAN when passed an invalid location.\n"); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + + psFree(image); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psImageInterpolate.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psImageInterpolate.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psImageInterpolate.c (revision 12167) @@ -0,0 +1,282 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(47); + + diag("psImageInterpolate() tests"); + + // very simple tests: no mask, bilinear mode, xramp image only + { + psMemId id = psMemGetId(); + + diag ("interpolate a delta function"); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + image->data.F32[10][10] = 1; + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 10.5, 10.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 1.0, "pixel center value - %f", value); + + diag ("why do I need to have tolerances of 4epsilon or so??"); + value = psImagePixelInterpolate (image, 10.9, 10.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float_tol (value, 0.6, 4.0*FLT_EPSILON, "pixel value - %.20f", value); + + value = psImagePixelInterpolate (image, 10.5, 10.9, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float_tol (value, 0.6, 4.0*FLT_EPSILON, "pixel value - %.20f", value); + + value = psImagePixelInterpolate (image, 10.1, 10.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float_tol (value, 0.6, 4.0*FLT_EPSILON, "pixel value - %.20f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // very simple tests: no mask, bilinear mode, xramp image only + { + psMemId id = psMemGetId(); + + diag ("interpolate an x-ramp"); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + image->data.F32[j][i] = i + 0.5; + } + } + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 2.5, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.5, "pixel center value - %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.2, "coord: 2.2, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.2, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 0.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 0.8, "coord: 0.8, value: %f", value); + + // no extrapolation + value = psImagePixelInterpolate (image, 0.3, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 0.5, "coord: 0.3, value: %f", value); + + value = psImagePixelInterpolate (image, -0.2, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 0.5, "coord: -0.2, value: %f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // very simple tests: no mask, bilinear mode, yramp image only + { + psMemId id = psMemGetId(); + + diag ("interpolate a y-ramp: "); + + // generate simple image (y ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + image->data.F32[j][i] = j + 0.5; + } + } + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 2.5, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.5, "pixel center value - %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.2, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.2, "coord: 2.2, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.5, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // very simple tests: no mask, bicube mode, xramp image only + { + psMemId id = psMemGetId(); + + diag ("interpolate an x-ramp (bicube)"); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + image->data.F32[j][i] = i + 0.5; + } + } + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 2.5, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.5, "coord; 2.5, 2.5, value - %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.2, "coord: 2.2, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.2, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, 2.2, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, 2.8, value: %f", value); + + diag ("coords outside of nominal range (1 < x < Nx - 2) return 'uncover'"); + + // no extrapolation: these return the 'uncover' value + value = psImagePixelInterpolate (image, 0.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 0.0, "coord: 0.8, 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 0.3, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 0.0, "coord: 0.3, 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, -0.2, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 0.0, "coord: -0.2, 2.8, value: %f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // very simple tests: no mask, bilinear mode, yramp image only + { + psMemId id = psMemGetId(); + + diag ("interpolate a y-ramp (bicube)"); + + // generate simple image (y ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + image->data.F32[j][i] = j + 0.5; + } + } + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 2.5, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.5, "pixel center value - %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.2, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.2, "coord: 2.2, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.5, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 2.8, "coord: 2.8, value: %f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // very simple tests: no mask, bilinear mode, x,y 2nd order shape + { + psMemId id = psMemGetId(); + + diag ("interpolate a quadratic shape (bicube)"); + + // generate simple image (x ramp) + psImage *image = psImageAlloc(32, 32, PS_TYPE_F32); + ok(image != NULL, "psImage successfully allocated"); + skip_start(image == NULL, 5, "Skipping tests because psImageAlloc() failed"); + + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + image->data.F32[j][i] = 0.25*PS_SQR(i + 0.5) + j + 0.5; + } + } + + // center of pixels is 0.5, 0.5 + float value; + + value = psImagePixelInterpolate (image, 2.5, 2.5, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 4.0625, "pixel center value - %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.2, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 3.41, "coord: 2.2, 2.5, value: %f", value); + + value = psImagePixelInterpolate (image, 2.5, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 4.3625002, "coord: 2.5, 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.2, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 4.010000229, "coord: 2.2, 2.8, value: %f", value); + + value = psImagePixelInterpolate (image, 2.8, 2.8, NULL, 0, 0.0, PS_INTERPOLATE_BICUBE); + ok_float (value, 4.75999975, "coord: 2.8, 2.8, value: %f", value); + + skip_end(); + + psFree(image); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psScalar.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psScalar.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psScalar.c (revision 12167) @@ -0,0 +1,126 @@ +/** @file tst_psScalar.c + * + * @brief Contains the tests for psScalar.[ch] + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ + * $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-18 19:10:56 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include + +#include "tap.h" +#include "pstap.h" + + +#define tstScalarAllocByType(datatype,value) \ +{ \ + psScalar* scalar; \ + scalar = psScalarAlloc(value,PS_TYPE_##datatype); \ + ok(scalar != NULL, "psScalarAlloc successful"); \ + skip_start(scalar==NULL,1,"Skipping 1 test because psScalarAlloc failed");\ + ok(scalar->type.type==PS_TYPE_##datatype && scalar->data.datatype==value, \ + "scalar datatype and value are legit" ); \ + skip_end(); \ + psFree(scalar); \ +} + + +#define tstScalarCopyByType(datatype,value) \ +{ \ + psScalar* scalarOrig; \ + psScalar* scalarCopy; \ + scalarOrig = psScalarAlloc(value,PS_TYPE_##datatype); \ + scalarCopy = psScalarCopy(scalarOrig); \ + ok(scalarCopy != NULL, "psScalarCopy != NULL"); \ + skip_start(scalarCopy==NULL,1,"Skipping 1 test since psScalarCopy failed");\ + ok(scalarCopy->type.type == scalarOrig->type.type && scalarCopy->data.datatype == scalarOrig->data.datatype, "Scalar datatype and value legit"); \ + skip_end(); \ + psFree(scalarCopy); \ + psFree(scalarOrig); \ +} + + + +int main(void) +{ + plan_tests(51); + + void testScalarAlloc(); + testScalarAlloc(); + void testBadScalarAlloc(); + testBadScalarAlloc(); + + void testScalarCopy(); + testScalarCopy(); + void testBadScalarCopy(); + testBadScalarCopy(); +} + +void testScalarAlloc(void) +{ + diag("psTestScalarAlloc"); + + //Verify the proper allocation/deallocation of scalar objects of valid types + tstScalarAllocByType(S8,10); + tstScalarAllocByType(U8,12); + tstScalarAllocByType(S16,14); + tstScalarAllocByType(U16,16); + tstScalarAllocByType(S32,18); + tstScalarAllocByType(U32,20); + tstScalarAllocByType(S64,22); + tstScalarAllocByType(U64,24); + tstScalarAllocByType(F32,26); + tstScalarAllocByType(F64,28); + tstScalarAllocByType(C32,30); + tstScalarAllocByType(C64,32); +} + + +void testBadScalarAlloc(void) +{ + diag("psTestBadScalarAlloc"); + + // Verify return is null for invalid scalar type + psScalar* scalar = psScalarAlloc(true,PS_TYPE_BOOL); + ok(scalar == NULL, "psScalarAlloc returns null for invalid type"); +} + + +void testScalarCopy(void) +{ + diag("psTestScalarCopy"); + + // Verify the proper copying of scalar objects for all valid types + tstScalarCopyByType(S8,100); + tstScalarCopyByType(U8,110); + tstScalarCopyByType(S16,120); + tstScalarCopyByType(U16,130); + tstScalarCopyByType(S32,140); + tstScalarCopyByType(U32,150); + tstScalarCopyByType(S64,160); + tstScalarCopyByType(U64,170); + tstScalarCopyByType(F32,180); + tstScalarCopyByType(F64,190); + tstScalarCopyByType(C32,200); + tstScalarCopyByType(C64,210); +} + + +void testBadScalarCopy(void) +{ + diag("psTestBadScalarCopy"); + + // Verify the return is null for invalid scalar type in the original + psScalar* scalarOrig = psScalarAlloc(0,PS_TYPE_S8); + scalarOrig->type.type = PS_TYPE_BOOL; + psScalar* scalarCopy = psScalarCopy(scalarOrig); + ok(scalarCopy == NULL, "psScalarCopy returns NULL for invalid type"); + + scalarCopy = psScalarCopy(NULL); + ok(scalarCopy == NULL, "psScalarCopy returns NULL for NULL argument"); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psVector.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psVector.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psVector.c (revision 12167) @@ -0,0 +1,781 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(220); + + diag("psVectorAlloc() tests"); + + { + psMemId id = psMemGetId(); + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + + ok(psVec != NULL, "psVector successfully allocated"); + skip_start(psVec == NULL, 4, "Skipping 4 tests because psVectorAlloc() failed"); + ok(psVec->nalloc == 5, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 5, "Vector population = %ld", psVec->n); + ok(psVec->type.type == PS_TYPE_S32, "Vector type = %d", psVec->type.type); + ok(psVec->type.dimen == PS_DIMEN_VECTOR, "Vector dimen = %d", psVec->type.dimen); + skip_end(); + + psFree(psVec); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psVector* vecZero = psVectorAlloc(0, PS_TYPE_S32); + + ok(vecZero != NULL, "zero-length vector allocated"); + skip_start(vecZero == NULL, 2, "Skipping 2 tests because psVectorAlloc() failed"); + ok(vecZero->nalloc == 0, "Vector size = %ld", vecZero->nalloc); + ok(vecZero->n == 0, "Vector population = %ld", vecZero->n); + skip_end(); + + psFree(vecZero); + } + + { + psVector* vecBogus = psVectorAlloc(10, 0); + + ok(vecBogus == NULL, "psVectorAlloc() doesn't not accept bogus type"); + psErr *err = psErrorLast(); + + skip_start(err == NULL, 2, "Skipping 2 tests because psVectorAlloc() didn't fail as expect"); + ok(strstr(err->name, "vectorAlloc"), "alloc failure - got error name %s", err->name); + ok(err->code == PS_ERR_BAD_PARAMETER_TYPE, "alloc failure - got error code %d", err->code); + skip_end(); + + psFree(vecBogus); + } + + + diag("psVectorRealloc() tests"); + + { + // create new psVector + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + ok(psVec->n == 5, "Vector population = %ld", psVec->n); + for(psS32 i = 0; i < 5; i++) { + printf ("Elem %d = %d\n", i, psVec->data.S32[i]); + } + + // generate first part of vector + for(psS32 i = 0; i < 5; i++) { + psVec->data.S32[i] = i*10; + psVec->n++; + } + + // Test C - Reallocate S32 vector bigger + ok(psVec->n == 5, "Vector population = %ld", psVec->n); + psVec = psVectorRealloc(psVec,10); + ok(psVec != NULL, "test vector reallocated to bigger size"); + skip_start(psVec == NULL, 4, "Skipping 4 tests because psVectorRealloc() failed"); + ok(psVec->nalloc == 10, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 5, "Vector population = %ld", psVec->n); + ok(psVec->type.type == PS_TYPE_S32, "Vector type = %d", psVec->type.type); + ok(psVec->type.dimen == PS_DIMEN_VECTOR, "Vector dimen = %d", psVec->type.dimen); + skip_end(); + + // generate test data values + for(psS32 i = 5; i < 10; i++) { + psVec->data.S32[i] = i*10; + psVec->n++; + } + + // test data values + skip_start(psVec == NULL, 10, "Skipping 10 tests because psVectorRealloc() failed"); + for(psS32 i = 0; i < 10; i++) { + ok (psVec->data.S32[i] == i*10, "Elem %d = %d, expected %d", i, psVec->data.S32[i], i*10); + } + skip_end(); + + psFree(psVec); + } + + { + // Test D - Reallocate S32 vector smaller + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec->n = 5; + + // generate test data values + for(psS32 i = 0; i < 5; i++) { + psVec->data.S32[i] = i*10; + psVec->n++; + } + + psVec = psVectorRealloc(psVec, 3); + + ok(psVec != NULL, "test vector reallocated to smaller size"); + skip_start(psVec == NULL, 5, "Skipping 6 tests because psVectorRealloc() failed"); + ok(psVec->nalloc == 3, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 3, "Vector population = %ld", psVec->n); + + // check that the test data values survived the realloc + for(psS32 i = 0; i < 3; i++) { + ok (psVec->data.S32[i] == i*10, "Elem %d = %d, expected %d", i, psVec->data.S32[i], i*10); + } + skip_end(); + } + + { + // reallocate to 0 length + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec = psVectorRealloc(psVec,0); + + ok(psVec != NULL, "test vector reallocated to zero length"); + skip_start(psVec == NULL, 2, "Skipping 2 tests because psVectorRealloc() failed"); + ok(psVec->nalloc == 0, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 0, "Vector population = %ld", psVec->n); + skip_end(); + + // Test E - Free S32 vector + // XXX not really a test... + psFree(psVec); + } + + { + psVector *vecBogus = psVectorAlloc(5, PS_TYPE_S32); + vecBogus = psVectorRealloc(NULL, 6); + + ok(vecBogus == NULL, "psVectorRealloc() doesn't not accept bogus type"); + psErr *err = psErrorLast(); + + skip_start(err == NULL, 2, "Skipping 2 tests because psVectorRealloc() didn't fail as expect"); + ok(strstr(err->name, "psVectorRealloc"), "alloc failure - got error name %s", err->name); + ok(err->code == PS_ERR_BAD_PARAMETER_NULL, "alloc failure - got error code %d", err->code); + skip_end(); + + psFree(vecBogus); + } + + + diag("psVectorExtend() tests"); + + { + // create new psVector + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec = psVectorExtend(psVec, 0, 2); + + ok(psVec != NULL, "test vector extended"); + skip_start(psVec == NULL, 2, "Skipping 2 tests because psVectorExtend() failed"); + ok(psVec->nalloc == 5, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 2, "Vector population = %ld", psVec->n); + skip_end(); + + psFree(psVec); + } + + { + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec = psVectorExtend(psVec, 0, 2); + psVec = psVectorExtend(psVec, 0, 2); + + ok(psVec != NULL, "test vector extended"); + skip_start(psVec == NULL, 2, "Skipping 2 tests because psVectorExtend() failed"); + ok(psVec->nalloc == 15, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 4,"Vector population = %ld", psVec->n); + skip_end(); + + psFree(psVec); + } + + { + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec = psVectorExtend(psVec, 0, 2); + psVec = psVectorExtend(psVec, 0, 2); + psVec = psVectorExtend(psVec, 0, -2); + + ok(psVec != NULL, "test vector extended"); + skip_start(psVec == NULL, 2, "Skipping 2 tests because psVectorExtend() failed"); + ok(psVec->nalloc == 15 ,"Vector size = %ld", psVec->nalloc); + ok(psVec->n == 2, "Vector population = %ld", psVec->n); + skip_end(); + + psFree(psVec); + } + + { + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + psVec = psVectorExtend(psVec, 0, 2); + psVec = psVectorExtend(psVec, 0, 2); + psVec = psVectorExtend(psVec, 0, -2); + psVec = psVectorExtend(psVec, 0, -20); + + ok(psVec != NULL, "test vector extended"); + skip_start(psVec == NULL, 2, "Skipping 2 tests because psVectorExtend() failed"); + ok(psVec->nalloc == 15, "Vector size = %ld", psVec->nalloc); + ok(psVec->n == 0, "Vector population = %ld", psVec->n); + skip_end(); + + psFree(psVec); + } + + + diag("psVectorInit() tests"); + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_U8); + ok(psVectorInit(vec, 1 ), "U8 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_U16); + ok(!psVectorInit(vec, PS_MAX_U64), "VectorInit failed. U16 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_U32); + ok(psVectorInit(vec, 10), "U32 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_U64); + ok(psVectorInit(vec, -1), "U64 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_S8); + ok(!psVectorInit(vec, PS_MAX_S16), "VectorInit failed. S8 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_S16); + ok(psVectorInit(vec, -100), "S16 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_S32); + ok(psVectorInit(vec, 1), "S32 Case"); + psFree(vec); + } + + { + // XXX is this test ok? + psVector *vec = psVectorAlloc(1, PS_TYPE_S64); + ok(psVectorInit(vec, PS_MAX_U64), "S64 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_F32); + ok(psVectorInit(vec, 1.1), "F32 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_F64); + ok(psVectorInit(vec, 1.4 ), "F64 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_C32); + psC32 vC32 = 1.23 + 1.19I; + ok(psVectorInit(vec, vC32), "C32 Case"); + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_C64); + psC64 vC64 = 2.13 + 2.31I; + ok(psVectorInit(vec, vC64), "C64 Case"); + psFree(vec); + } + + + + diag("psVectorCreate() tests"); + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_S8); + for (int i = 0; i < 10; i++) { + ok(test->data.S8[i] == i, "Vector data matches. i = %d, data=%d", + i, test->data.S8[i]); + } + psFree(test); + } + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_U8); + for (int i = 0; i < 10; i++) { + ok(test->data.U8[i] == i, "Vector data matches. i = %d, data=%d", + i, test->data.U8[i]); + } + psFree(test); + } + + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_U32); + for (int i = 0; i < 10; i++) { + ok(test->data.U32[i] == i, "Vector data matches. i = %d, data=%d", + i, test->data.U32[i]); + } + psFree(test); + } + + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_S32); + for (int i = 0; i < 10; i++) { + ok(test->data.S32[i] == i, "Vector data matches. i = %d, data=%d", + i, test->data.S32[i]); + } + psFree(test); + } + + + { + psVector *input = psVectorAlloc(5, PS_TYPE_F32); + psVector *test = psVectorCreate(input, 0.0, 5.0, 0.5, PS_TYPE_F32); + + for (int i = 0; i < 10; i++) { + ok(test->data.F32[i] == i * 0.5, + "Vector data matches. i = %d, data=%f", i, test->data.F32[i]); + } + + psFree(input); + } + + // Test PS_TYPE_F64 + // PS_TYPE_S64 + // PS_TYPE_U64 + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_S64); + for (int i = 0; i < 10; i++) + { + ok(test->data.S64[i] == i, + "Vector data does not match. i = %d, data=%ld", + i, (long)test->data.S64[i]); + } + psFree(test); + } + + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_U64); + for (int i = 0; i < 10; i++) + { + ok(test->data.U64[i] == i, + "Vector data does not match. i = %d, data=%ld", + i, (long)test->data.U64[i]); + } + psFree(test); + } + + { + psVector *input = psVectorAlloc(5, PS_TYPE_F64); + psVector *test = psVectorCreate(input, 0.0, 5.0, 0.5, PS_TYPE_F64); + + for (int i = 0; i < 10; i++) + { + ok(test->data.F64[i] == i * 0.5, + "Vector data does not match. i = %d, data=%f", + i, test->data.F64[i]); + } + psFree(input); + } + + // Test PS_TYPE_U16 + // PS_TYPE_S16 + { + psVector *test = psVectorCreate(NULL, 0.0, 10.0, 1.0, PS_TYPE_S16); + for (int i = 0; i < 10; i++) + { + ok(test->data.S16[i] == i, "Vector data matches. i = %d, data=%d", + i, test->data.S16[i]); + } + psFree(test); + } + + { + psVector *input = psVectorAlloc(5, PS_TYPE_U16); + psVector *test = psVectorCreate(input, 0.0, 20.0, 2.0, PS_TYPE_U16); + + for (int i = 0; i < 10; i++) + { + ok(test->data.U16[i] == i * 2.0, + "Vector data matches. i = %d, data=%d", i, test->data.U16[i]); + } + psFree(input); + } + + + + diag("psVectorToString() tests"); + + #define TEST_VECTOR_TO_STRING(TYPE, SIZE, START, INC, EXPECTED) \ + { \ + const int asize = SIZE; /* alloc size */ \ + const int osize = 100; /* output size (max) */ \ + const char* const expected = EXPECTED; \ + \ + psVector *input = psVectorAlloc(asize, TYPE); \ + psVector *test = psVectorCreate(input, START, START+asize*INC, \ + INC, TYPE); \ + \ + psString result = psVectorToString(test, osize); \ + ok(strcmp(result, expected) == 0, \ + "psVectorToString expected:result = %s:%s", expected, result ); \ + \ + psFree(input); \ + } + + + TEST_VECTOR_TO_STRING(PS_TYPE_U8, 5, 1, 1, "[1,2,3,4,5]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_U16, 5, 1, 1, "[1,2,3,4,5]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_U32, 5, 1, 1, "[1,2,3,4,5]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_U64, 5, 1, 1, "[1,2,3,4,5]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_S8, 5, -100, 10,"[-100,-90,-80,-70,-60]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_S16, 5, 0, -100, "[0,-100,-200,-300,-400]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_S32, 5, 0, -100, "[0,-100,-200,-300,-400]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_S64, 5, 0, -100, "[0,-100,-200,-300,-400]"); + + TEST_VECTOR_TO_STRING(PS_TYPE_F32,5,.123,1,"[0.123,1.123,2.123,3.123,4.123]"); + TEST_VECTOR_TO_STRING(PS_TYPE_F64,5,.123,1,"[0.123,1.123,2.123,3.123,4.123]"); + + // Must test complex types separately from macro + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_C32); + vec->n = 1; + psC32 vC32 = 1.23 + 1.19I; + psVectorInit(vec, vC32); + psString result = psVectorToString(vec, 100); + \ + psString expected = "[1.23+1.19i]"; + ok(strcmp(result,expected) == 0, \ + "psVectorToString expected:result = %s:%s", expected, result ); + \ + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(1, PS_TYPE_C64); + vec->n = 1; + psC64 vC64 = 2.13 + 2.31I; + psVectorInit(vec, vC64); + psString result = psVectorToString(vec, 100); + \ + psString expected = "[2.13+2.31i]"; + ok(strcmp(result,expected) == 0, \ + "psVectorToString expected:result = %s:%s", expected, result ); + \ + psFree(vec); + } + + + + + diag("p_psVectorGetElementF64() tests"); + + #define TEST_VECTOR_GET_ELEMENT_F64(ELEM_TYPE, SIZE, VALUE_TYPE, \ + INIT_VALUE ) \ + { \ + psVector *vec = psVectorAlloc(SIZE, ELEM_TYPE); \ + vec->n = SIZE; \ + VALUE_TYPE initValue = INIT_VALUE; \ + psVectorInit(vec, initValue); \ + psF64 result = p_psVectorGetElementF64(vec, 0); \ + psF64 expected = (psF64)initValue; \ + ok(result == expected, \ + "p_psVectorGetElementF64 expected:result = %f:%f",expected,result);\ + \ + psFree(vec); \ + } + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_U8, 1, psU8, 1); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_U16, 2, psU16, 2); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_U32, 3, psU32, 3); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_U64, 100, psU64, 999999); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_S8, 1, psS8, -1); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_S16, 2, psS16, -2); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_S32, 3, psS32, -3); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_S64, 100, psS64, -999999); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_F32,1, psF32, .123); + + TEST_VECTOR_GET_ELEMENT_F64(PS_TYPE_F64,2, psF64, -123.123); + + // Need different test for complex types since NAN returned. + + #define TEST_VECTOR_GET_C_ELEMENT_F64(ELEM_TYPE, SIZE, VALUE_TYPE, \ + INIT_VALUE ) \ + { \ + psVector *vec = psVectorAlloc(SIZE, ELEM_TYPE); \ + vec->n = SIZE; \ + VALUE_TYPE initValue = INIT_VALUE; \ + psVectorInit(vec, initValue); \ + psF64 result = p_psVectorGetElementF64(vec, 0); \ + ok(isnan(result), \ + "p_psVectorGetElementF64 expected NAN/nan got %f", result); \ + \ + psFree(vec); \ + } + + TEST_VECTOR_GET_C_ELEMENT_F64(PS_TYPE_C32,1, psC32, 1.23+1.19I); + + TEST_VECTOR_GET_C_ELEMENT_F64(PS_TYPE_C64,100, psC64, -1.23-1.19I); + + + + + diag("p_psVectorPrint() tests"); + + #define TEST_VECTOR_PRINT(ELEM_TYPE, SIZE, VALUE_TYPE, INIT_VALUE, FD, \ + OUT_NAME, EXPECTED_RC ) \ + { \ + psVector *vec = psVectorAlloc(SIZE, ELEM_TYPE); \ + vec->n = SIZE; \ + VALUE_TYPE initValue = INIT_VALUE; \ + psVectorInit(vec, initValue); \ + psBool result = p_psVectorPrint(FD, vec, OUT_NAME); \ + ok(result == EXPECTED_RC, \ + "p_psVectorPrint expected:result = %d:%d",EXPECTED_RC,result); \ + \ + psFree(vec); \ + } + + TEST_VECTOR_PRINT(PS_TYPE_U8, 1, psU8, 1, 1, "PS_TYPE_U8", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_U16, 2, psU16, 2, 1, "PS_TYPE_U16", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_U32, 3, psU32, 3, 1, "PS_TYPE_U32", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_U64, 4, psU64, 999999, 1, "PS_TYPE_U64", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_S8, 1, psS8, -1, 1, "PS_TYPE_S8", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_S16, 2, psS16, -2, 1, "PS_TYPE_S16", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_S32, 3, psS32, -3, 1, "PS_TYPE_S32", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_S64, 4, psS64, -999999, 1, "PS_TYPE_S64", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_F32,1, psF32, .123, 1, "PS_TYPE_F32", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_F64,2, psF64, -123.123, 1, "PS_TYPE_F64", TRUE); + + TEST_VECTOR_PRINT(PS_TYPE_F64,2, psF64, -123.123, 99, "PS_TYPE_F64", FALSE); + + + + diag("psVectorSet() tests"); + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + + ok(psVectorSet(vec, 0, 10), + "VectorSet set S32 at position 0"); + + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + + ok(!psVectorSet(vec, 10, 10), + "VectorSet failes to set S32 at out of range position"); + + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + + ok(psVectorSet(vec, 1, 4) == true, + "VectorSet set S32 at position 1"); + + psFree(vec); + } + + + diag("psVectorGet() tests"); + + { + psVector *vec = psVectorAlloc(10, PS_TYPE_S32); + psVectorSet(vec, 0, 10); + + ok((psS32)psVectorGet(vec, 0) == 10, + "VectorGet returned the correct S32 from position 0"); + + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + psVectorSet(vec, -1, 4); + + ok((psS32)psVectorGet(vec, -1) == 4, + "VectorGet returned the correct S32 from tail using -1"); + + psFree(vec); + } + + + diag("psVectorCountPixelMask() tests"); + + { + ok(psVectorCountPixelMask(NULL, 1) == -1, + "psVectorCountPixelMask returned -1 for NULL Vector input"); + } + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + vec->data.S32[0] = 0; + vec->data.S32[1] = 1; + vec->data.S32[2] = 0; + vec->data.S32[3] = 1; + vec->data.S32[4] = 0; + vec->n = 5; + + ok(psVectorCountPixelMask(vec, 1) == -1, + "returned -1 for wrong type of Vector input"); + + psFree(vec); + } + + { + psVector *vec = psVectorAlloc(5, PS_TYPE_U8); + vec->data.U8[0] = 0; + vec->data.U8[1] = 1; + vec->data.U8[2] = 0; + vec->data.U8[3] = 1; + vec->data.U8[4] = 0; + vec->n = 5; + long numPix = psVectorCountPixelMask(vec, 1); + + ok(numPix != -1, "returned -1 for correct Vector input"); + ok(numPix == 2, "returned pixel count %d", numPix); + + psFree(vec); + } + + + diag("psVectorLength() tests"); + + { + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + + ok(psVectorLength(vector) == 0, + "returned the correct length of vector"); + + psFree(vector); + } + + { + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + vector->n = 5; + + ok(psVectorLength(vector) == 5, + "returned the correct length of vector"); + + psFree(vector); + } + + { + psVector *vector = psVectorAlloc(6, PS_TYPE_F32); + vector->n = 6; + + ok(psVectorLength(vector) == 6, + "returned the correct length of vector"); + + psFree(vector); + } + + { + ok(psVectorLength(NULL) == -1, "returned -1 for a NULL input vector"); + } + + { + psArray *array = psArrayAlloc(5); + + ok(psVectorLength((psVector*)array) == -1, + "returned -1 for an invalid input vector"); + + psFree(array); + } + + + diag("psVectorCopy() tests"); + + { + + ok(psVectorCopy(NULL, NULL, PS_TYPE_F32) == NULL, + "returned a NULL vector for NULL input"); + } + + { + psVector *in = psVectorAlloc(5, PS_TYPE_F32); + in->n = 5; + + for (int i = 0; i < 5; i++) { + in->data.F32[i] = i; + } + + //Try copy of different type + psVector *copy = psVectorCopy(NULL, in, PS_TYPE_F64); + ok(copy != NULL, "returned a non NULL vector for correct input"); + skip_start(copy == NULL, 1, "Skipping 1 test because psVectorCopy() failed"); + ok(copy->data.F64[2] == 2.0, + "copy->data.f64[2] = %lf, in->data.f32[2] = %f", + copy->data.F64[2], in->data.F32[2]); + skip_end(); + + psFree(in); + psFree(copy); + } + + // XXX psVectorRecycle needs it's own tests + // copy = psVectorRecycle(copy, in->n + 2, PS_TYPE_F64); + + { + // Try copy of same type and non-NULL outVector of different type and + // size. + psVector *in = psVectorAlloc(5, PS_TYPE_F32); + in->n = 5; + for (int i = 0; i < 5; i++) + { + in->data.F32[i] = i; + } + psVector *copy = psVectorAlloc(5, PS_TYPE_F64); + copy = psVectorCopy(copy, in, in->type.type); + + ok(copy != NULL, "returned a NULL vector for correct input"); + skip_start(copy == NULL, 2, + "Skipping 1 test because psVectorCopy() failed"); + ok(copy->type.type == PS_TYPE_F32, "copy has the correct data type"); + ok(copy->data.F32[2] == 2.0, "copy has the correct data value"); + skip_end(); + + psFree(in); + psFree(copy); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_01.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_01.c (revision 12167) @@ -0,0 +1,151 @@ +/** @file tst_psVectorSort_01.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 1: + * A) Sort input vector to output vector for all types + * B) Sort input float vector into itself + * C) Attempt to sort vector with invalid type (i.e. PS_TYPE_BOOL) + * D) Sort input vector with zero items + * C) Free float vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 22:14:48 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + + +#define tstVectorSortByType(datatype,value) \ +diag( "tstVectorSortByType_" #datatype ); \ +in = psVectorAlloc(7,PS_TYPE_##datatype); \ +in->n = 7; \ +out = psVectorAlloc(7,PS_TYPE_##datatype); \ +out->n = 7; \ +in->data.datatype[0] = 7+value; \ +in->data.datatype[1] = 9+value; \ +in->data.datatype[2] = 3+value; \ +in->data.datatype[3] = 1+value; \ +in->data.datatype[4] = 5+value; \ +in->data.datatype[5] = 5+value; \ +in->data.datatype[6] = 0+value; \ +tempVec = out; \ +out = psVectorSort(out, in); \ +ok(tempVec == out, \ + "Return value equal to orignal output argument passed to function"); \ +skip_start(tempVec != out, \ + 7,"Return value not equal to orignal output argument passed to function"); \ +ok(out->data.datatype[0] == in->data.datatype[6], \ + "sort out[0] type %s",#datatype); \ +skip_start(out->data.datatype[0] != in->data.datatype[6], \ + 6,"sort out[0] type %s",#datatype); \ +ok(out->data.datatype[1] == in->data.datatype[3], \ + "sort out[1] type %s",#datatype); \ +skip_start(out->data.datatype[1] != in->data.datatype[3], \ + 5,"Improper sort out[1] type %s",#datatype); \ +ok(out->data.datatype[2] == in->data.datatype[2], \ + "sort out[2] type %s",#datatype); \ +skip_start(out->data.datatype[2] != in->data.datatype[2], \ + 4,"Improper sort out[2] type %s",#datatype); \ +ok(out->data.datatype[3] == in->data.datatype[4], \ + "sort out[3] type %s",#datatype); \ +skip_start(out->data.datatype[3] != in->data.datatype[4], \ + 3,"Improper sort out[3] type %s",#datatype); \ +ok(out->data.datatype[4] == in->data.datatype[5], \ + "sort out[4] %s",#datatype); \ +skip_start(out->data.datatype[4] != in->data.datatype[5], \ + 2,"Improper sort out[4] %s",#datatype); \ +ok(out->data.datatype[5] == in->data.datatype[0], \ + "sort out[5] %s",#datatype); \ +skip_start(out->data.datatype[5] != in->data.datatype[0], \ + 1,"Improper sort out[5] %s",#datatype); \ +ok(out->data.datatype[6] == in->data.datatype[1], \ + "sort out[6] %s",#datatype); \ +skip_end(); \ +skip_end(); \ +skip_end(); \ +skip_end(); \ +skip_end(); \ +skip_end(); \ +skip_end(); \ +psFree(in); \ +psFree(out); + + + +psS32 main(psS32 argc, + char* argv[]) +{ + plan_tests(92); + + psVector *in = NULL; + psVector *out = NULL; + psVector *tempVec = NULL; + + // Test A - Verify the sort for all supported types + + tstVectorSortByType(S8,0); + tstVectorSortByType(S16,1); + tstVectorSortByType(S32,2); + tstVectorSortByType(S64,3); + tstVectorSortByType(U8,4); + tstVectorSortByType(U16,5); + tstVectorSortByType(U32,6); + tstVectorSortByType(U64,7); + tstVectorSortByType(F32,8); + tstVectorSortByType(F64,9); + + + // Test B - Sort input vector into itself + + in = psVectorAlloc(7, PS_TYPE_F32); + in->n = 7; + in->data.F32[0] = 0.7f; + in->data.F32[1] = 0.9f; + in->data.F32[2] = 0.3f; + in->data.F32[3] = 0.1f; + in->data.F32[4] = 0.5f; + in->data.F32[5] = 0.5f; + in->data.F32[6] = -2.0f; + in = psVectorSort(in, in); + ok(in->data.F32[0] == -2.0f,"self sort in[0]"); + ok(in->data.F32[1] == 0.1f,"self sort in[1]"); + ok(in->data.F32[2] == 0.3f, "self sort in[2]"); + ok(in->data.F32[3] == 0.5f, "self sort in[3]"); + ok(in->data.F32[4] == 0.5f, "self sort in[4]"); + ok(in->data.F32[5] == 0.7f, "self sort in[5]"); + ok(in->data.F32[6] == 0.9f, "self sort in[6]"); + + // Test C - Attempt to sort vector with invalid type + in->type.type = PS_TYPE_BOOL; + out = psVectorAlloc(7,PS_TYPE_F32); + tempVec = psVectorSort(out,in); + ok(tempVec == NULL, "Did return NULL on error"); + + // Test D - Sort vector with zero elements + out = psVectorAlloc(7,PS_TYPE_F32); + in->n = 0; + out = psVectorSort(out,in); + ok (out != NULL, "psVectorSort returned a non-NULL vector" ); + skip_start (out == NULL, 1, "psVectorSort returned a NULL vector" ); + ok (out->n == 0, "psVectorSort correctly return a 0-length vector.\n"); + skip_end(); + + psFree(out); + + + // Test D - Free float vectors + psFree(in); + ok ( ! psMemCheckLeaks(0, NULL, stdout, false),"Memory leaks not detected"); + + psS32 nBad = psMemCheckCorruption(stderr, false); + ok(!nBad, "Found %d bad memory blocks\n", nBad); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_02.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_02.c (revision 12167) @@ -0,0 +1,134 @@ +/** @file tst_psVectorSort_02.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 2: + * A) Create vectors + * B) Sort integer vector of indices based on pre-sort order of floating point vector + * C) Attempt to sort with null input vector + * D) Sort with output vector which needs to be resized + * E) Sort input vector with zero elements + * F) Attempt to sort input vector with invalid type + * G) Free vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 22:14:48 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + +#define tstVectorSortIndexByType(datatype,value) \ +diag( "tstVectorSortIndexByType_" #datatype ); \ +in = psVectorAlloc( 5, PS_TYPE_##datatype ); \ +in->n = 5; \ +in->data.datatype[0] = 7+value; \ +in->data.datatype[1] = 9+value; \ +in->data.datatype[2] = 5+value; \ +in->data.datatype[3] = 1+value; \ +in->data.datatype[4] = 5+value; \ +out = psVectorSortIndex(out,in); \ +ok(out->type.type == PS_TYPE_S32, \ + "Output vector is of type PS_TYPE_S32"); \ +ok(out->data.U32[0] == 3, \ + "index sort out[0] = %ld",out->data.U32[0]); \ +ok(out->data.U32[1] == 2, \ + "index sort out[1] = %ld",out->data.U32[1]); \ +ok(out->data.U32[2] == 4, \ + "index sort out[2] = %ld",out->data.U32[2]); \ +ok(out->data.U32[3] == 0, \ + "index sort out[3] = %ld",out->data.U32[3]); \ +ok(out->data.U32[4] == 1, \ + "index sort out[4] = %ld",out->data.U32[4]); \ +psFree(in); + + +psS32 main(psS32 argc, char* argv[]) +{ + plan_tests(71); + + psVector *in = NULL; + psVector *out = NULL; + psVector *tempVect = NULL; + + // Test A - Sort vectors by index for all types + tstVectorSortIndexByType(S8,0) + tstVectorSortIndexByType(U8,1) + tstVectorSortIndexByType(S16,2) + tstVectorSortIndexByType(U16,3) + tstVectorSortIndexByType(S32,4) + tstVectorSortIndexByType(U32,5) + tstVectorSortIndexByType(S64,6) + tstVectorSortIndexByType(U64,7) + tstVectorSortIndexByType(F32,8) + tstVectorSortIndexByType(F64,9) + psFree(out); + + // Test C Attempt to sort with null input vector + in = NULL; + out = psVectorAlloc(5,PS_TYPE_U32); + out = psVectorSortIndex(out,in); + ok(out == NULL, "Did return NULL with NULL input specified"); + + // Test D Sort with output vector which needs to be resized + in = psVectorAlloc(5,PS_TYPE_U8); + in->n=5; + for(psS32 m=0; m<5; m++) { + in->data.U8[m]= 20-m; + } + out = psVectorAlloc(5,PS_TYPE_U32); + out->n = 5; + out = psVectorSortIndex(out,in); + ok(out->n == 5, "Did properly resize output vector...out->n=%d, in->n=%d", out->n, in->n); + ok(out->data.U32[0] == 4, + "Did properly sort index out[0] = %d",out->data.U32[0]); + ok(out->data.U32[1] == 3, + "Did properly sort index out[1] = %d",out->data.U32[1]); + ok(out->data.U32[2] == 2, + "Did properly sort index out[2] = %d",out->data.U32[2]); + ok(out->data.U32[3] == 1, + "Did properly sort index out[3] = %d",out->data.U32[3]); + ok(out->data.U32[4] == 0, + "Did properly sort index out[4] = %d",out->data.U32[4]); + + psFree(in); + psFree(out); + + // Test E - Sort input vector with zero elements + in = psVectorAlloc(5,PS_TYPE_U8); + out = psVectorAlloc(5,PS_TYPE_U32); + in->n = 0; + out->n = 0; + tempVect = out; + out = psVectorSortIndex(out,in); + ok ( out == tempVect, "Did not return the same output vector"); + in->n=5; + out->n=5; + psFree(out); + psFree(in); + + // Test F - Attempt to sort input vector with invalid type + in = psVectorAlloc(5,PS_TYPE_U8); + out = psVectorAlloc(5,PS_TYPE_U32); + in->n = 5; + out->n = 5; + tempVect = out; + in->type.type = PS_TYPE_BOOL; + out = psVectorSortIndex(out,in); + ok( out == NULL, "Did return NULL"); + in->type.type = PS_TYPE_U8; + psFree(in); + + // Test G - Free vectors + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + ok(!nLeaks, "Found %d memory leaks\n", nLeaks); + psS32 nBad = psMemCheckCorruption(stderr, false); + ok(!nBad, "Found %d bad memory blocks\n", nBad); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_03.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_03.c (revision 12167) @@ -0,0 +1,72 @@ +/** @file tst_psVectorSort_03.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 3: + * A) Create float vectors of different sizes + * B) Attempt to sort vectors...should get errors + * C) Create float vector and double vector + * D) Attempt to sort vectors...should get errors + * E) Free float, double vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 22:14:48 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + + +psS32 main(psS32 argc, + char* argv[]) +{ + plan_tests(2); + + psVector *in = NULL; + psVector *out = NULL; + psVector *in2 = NULL; + psVector *out2 = NULL; + + // Test A - Create float vectors + in = psVectorAlloc(5, PS_TYPE_F32); + in->n = 5; + out = psVectorAlloc(6, PS_TYPE_F32); + out->n = 6; + in->n = 5; + for(psS32 i=0; i<5; i++) { + //printf("arr[%d] = %f\n", i, in->data.F32[i]); + } + + + // Test B - Sort input float vector and put results into output float vector + out = psVectorSort(out, in); + + // Test C - Create float vector and double vector + in2 = psVectorAlloc(5, PS_TYPE_F32); + in2->n = 5; + out2 = psVectorAlloc(5, PS_TYPE_F64); + out2->n = 5; + for(psS32 j=0; j<5; j++) { + //printf("vec[%d] = %f\n", j, in2->data.F32[j]); + } + + // Test D - Attempt to sort vectors with output of different type should create error + out2 = psVectorSort(out2, in2); + + // Test C - Free float vectors + psFree(in); + psFree(in2); + psFree(out); + psFree(out2); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + ok(!nLeaks, "Found %d memory leaks\n", nLeaks); + psS32 nBad = psMemCheckCorruption(stderr, false); + ok(!nBad, "Found %d bad memory blocks\n", nBad); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_04.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tap_psVectorSort_04.c (revision 12167) @@ -0,0 +1,41 @@ +/** @file tst_psVectorSort_04.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 4: + * A) Attempt to sort with null input vector + * B) Free vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 22:14:48 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + + +psS32 main(psS32 argc, + char* argv[]) +{ + plan_tests(2); + + psVector *badIn = NULL; + psVector *goodOut = psVectorAlloc(5, PS_TYPE_F32); + + // Test A - Attempt to sort with null input vector + goodOut = psVectorSort(goodOut, badIn); + + // Test B - Free vectors + psFree(goodOut); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + ok(!nLeaks, "Found %d memory blocks\n", nLeaks); + psS32 nBad = psMemCheckCorruption(stderr, false); + ok(!nBad, "Found %d bad memory blocks\n", nBad); +} Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psImage.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psImage.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psImage.c (revision 12167) @@ -0,0 +1,583 @@ +/** @file tst_psImage.c + * + * @brief Contains the tests for psImage.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-06-15 02:29:12 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include +#include +#include +#include + +#include "psTest.h" +#include "pslib_strict.h" +#include "psType.h" + +static psS32 testImageAlloc(void); +static psS32 testRegion(void); +static psS32 testRegion2(void); +static psS32 testRegion3(void); +static psS32 testImageInit(void); +static psS32 testImageSet(void); +static psS32 testImageGet(void); + +testDescription tests[] = { + {testImageAlloc,546,"psImageAlloc",0,false}, + {testImageAlloc,548,"psImageFree",0,true}, + {testRegion,790,"psRegionSet",0,false}, + {testRegion,791,"psRegionFromString",0,true}, + {testRegion2,792,"psRegionForImage",0,false}, + {testRegion3,793,"psRegionForSquare",0,false}, + {testImageInit,794,"psImageInit",0,false}, + {testImageSet,795,"psImageSet",0,false}, + {testImageGet,666,"psImageGet",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return ! runTestSuite(stderr,"psImage",tests,argc,argv); +} + +psS32 testImageAlloc(void) +{ + psImage* image = NULL; + psU32 sizes = 6; + psU32 numCols[] = { + 0,1,1,100,100,150 + }; + psU32 numRows[] = { + 0,1,100,1,150,100 + }; + psU32 types = 12; + psElemType type[] = { PS_TYPE_S8, PS_TYPE_S16, PS_TYPE_S32, PS_TYPE_S64, + PS_TYPE_U8, PS_TYPE_U16, PS_TYPE_U32, PS_TYPE_U64, + PS_TYPE_F32, PS_TYPE_F64, PS_TYPE_C32, PS_TYPE_C64}; + + psLogMsg(__func__,PS_LOG_INFO,"#546 - psImageAlloc shall allocate memory for a psImage structure"); + + for (psU32 t=0;ttype.dimen != PS_DIMEN_IMAGE || image->type.type != type[t]) { + psError(PS_ERR_UNKNOWN, true,"psImageAlloc allocated wrong dimen/type (%d/%d), should be " + "PS_IMAGE_DIMEN/%d", image->type.dimen, image->type.type, type[t]); + psFree(image); + return 2; + } + + if (image->numCols != numCols[i] || image->numRows != numRows[i]) { + psError(PS_ERR_UNKNOWN, true,"psImageAlloc allocated wrong size %dx%d, should be %dx%d (type = %d)", + image->numCols, image->numRows, numCols[i], numRows[i],type[t]); + psFree(image); + return 3; + } + + if (image->col0 != 0 || image->row0 != 0) { + psError(PS_ERR_UNKNOWN, true,"psImageAlloc returned row0/col0 of %d/%d. Should be 0/0.", + image->row0, image->row0); + psFree(image); + return 4; + } + + if (image->parent != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageAlloc returned non-NULL parent"); + psFree(image); + return 5; + } + + if (image->children != NULL) { + psError(PS_ERR_UNKNOWN, true,"psImageAlloc returned non-NULL children array"); + psFree(image); + return 7; + } + + switch (type[t]) { + case PS_TYPE_U16: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.U16[r][c] = 2*c+r; + } + } + for (psS32 r=0;rdata.U16[r][c] != 2*c+r) { + psError(PS_ERR_UNKNOWN, true,"Could not set all pixels in uint16 image at (%d,%d)",c,r); + psFree(image); + return 8; + } + } + } + } + break; + case PS_TYPE_F32: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.F32[r][c] = 2.0f*c+r; + } + } + for (psS32 r=0;rdata.F32[r][c] - (2.0f*c+r)) > FLT_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"Could not set all pixels in float image at (%d,%d)",c,r); + psFree(image); + return 8; + } + } + } + } + break; + case PS_TYPE_F64: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.F64[r][c] = 2.0f*c+r; + } + } + for (psS32 r=0;rdata.F64[r][c] - (2.0f*c+r)) > DBL_EPSILON) { + psError(PS_ERR_UNKNOWN, true,"Could not set all pixels in double image at (%d,%d)",c,r); + psFree(image); + return 8; + } + } + } + } + break; + case PS_TYPE_C32: { + psU32 rows = numRows[i]; + psU32 cols = numCols[i]; + + for (psS32 r=0;rdata.C32[r][c] = r + I * c; + } + } + for (psS32 r=0;rdata.C32[r][c]) - r) > FLT_EPSILON || + fabsf(cimagf(image->data.C32[r][c]) - c) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN, true,"Could not set all pixels in complex image at (%d,%d)",c,r); + psFree(image); + return 8; + } + } + } + } + break; + default: { + // ignore type and just use as byte bucket. + psU32 rows = numRows[i]; + psU32 cols = numCols[i]*PSELEMTYPE_SIZEOF(type[t]); + + for (psS32 r=0;rdata.U8[r][c] = (uint8_t)(r + c); + } + } + for (psS32 r=0;rdata.U8[r][c] != (uint8_t)(r + c)) { + psError(PS_ERR_UNKNOWN, true,"Could not set all pixels in image (type=%d) at (%d,%d)", + type[t],c,r); + psFree(image); + return 8; + } + } + } + } + } + psFree(image); + } + } + + // #548: Verify no memory leaks or corruption are detected after a valid psImage structure with multiple + // children is freed. + image = psImageAlloc(100,100,PS_TYPE_F32); + psImageSubset(image,(psRegion) { + 50,0,70,20 + } + ); + psImageSubset(image,(psRegion) { + 70,20,90,40 + } + ); + + psFree(image); + + return 0; +} + +static psS32 testRegion(void) +{ + int testNum = 0; + + + // Testpoint #790 + + psRegion region = psRegionSet(1,2,3,4); + + testNum++; + if (region.x0 != 1 || region.x1 != 2 || region.y0 != 3 || region.y1 != 4) { + psError(PS_ERR_UNKNOWN, false, + "The region attributes are not set properly (%s)", + psRegionToString(region)); + return testNum; + } + + // Testpoint #791 + + region = psRegionFromString("[1:2,3:4]"); + + testNum++; + if (region.x0 != 0 || region.x1 != 2 || region.y0 != 2 || region.y1 != 4) { + psError(PS_ERR_UNKNOWN, false, + "The region attributes are not set properly (%s)", + psRegionToString(region)); + return testNum; + } + + region = psRegionFromString("[1:2,3:]"); + + testNum++; + if (! isnan(region.x0)) { + psError(PS_ERR_UNKNOWN, false, + "psRegionFromString returned a non-NULL pointer given a malformed string."); + return testNum; + } + + return 0; +} + +//psRegionForImage// +static psS32 testRegion2(void) +{ + psImage *in; + psRegion inReg; + psRegion out; + in = psImageAlloc(1, 1, PS_TYPE_S32); + inReg = psRegionSet(1, 2, 1, 2); + out = psRegionForImage(in,inReg); + psRegion inReg2; + psRegion out2; + inReg2 = psRegionSet(-1, 0, -2, -1); + out2 = psRegionForImage(in, inReg2); + + if( out.x0 != 1 || out.x1 != 1 || out.y0 != 1 || out.y1 != 1 ) { + psError(PS_ERR_UNKNOWN, true, "Error: Region For Image returned incorrect values.\n"); + } + if( out2.x0 != 0 || out2.x1 != 1 || out2.y0 != 0 || out2.y1 != 0 ) { + psError(PS_ERR_UNKNOWN, true, "Error: Region For Image returned incorrect values.\n"); + } + + psFree(in); + return 0; +} + +//psRegionForSquare// +static psS32 testRegion3(void) +{ + float X = 1; + float Y = 1; + float RAD = 1; + psRegion out; + out = psRegionForSquare(X, Y, RAD); + if (out.x0 != 0 || out.x1 != 3 || out.y0 != 0 || out.y1!= 3) + psError(PS_ERR_UNKNOWN, true, "Error: Region For Square returned incorrect values.\n"); + return 0; +} + +//Initialize an image with a given value.// +static psS32 testImageInit(void) +{ + psImage *in1 = NULL; + psImage *in2 = NULL; + psImage *in3 = NULL; + psImage *in4 = NULL; + int nRow = 1; + int nCol = 1; + in1 = psImageAlloc(nRow, nCol, PS_TYPE_U8); + if ( !psImageInit(in1, -1 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "ImageInit failed. U8 Case - 1x1\n"); + } + nRow = 5; + in2 = psImageAlloc(nRow, nCol, PS_TYPE_F32); + if ( !psImageInit(in2, 3) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "ImageInit failed. F32 Case - 5x1\n"); + } + nCol = 5; + in3 = psImageAlloc(nRow, nCol, PS_TYPE_F64); + if ( !psImageInit(in3, 3.141) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "ImageInit failed. F64 Case - 5x5\n"); + } + in4 = psImageAlloc(nRow, nCol, PS_TYPE_S32); + if ( !psImageInit(in4, 3) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "ImageInit failed. S32 Case - 5x5\n"); + } + psFree(in1); + psFree(in2); + psFree(in3); + psFree(in4); + return 0; +} + +static psS32 testImageSet(void) +{ + psImage *image = NULL; + image = psImageAlloc(5, 4, PS_TYPE_S32); + + //Set the position of the subimage relative to the parent. + image->col0 = 10; + image->row0 = 10; + for (int i = 0; i < 4; i++) { + for (int j = 0; j < 5; j++) { + image->data.S32[i][j] = i+j; + } + } + + //Attempt to set a position in a NULL psImage* + psImage *none = NULL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(none, 1, 1, 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return false when passed a NULL image.\n"); + return 1; + } + + //Attempt to set a position in a psImage* with negative numCols, numRows + none = psImageAlloc(2, 2, PS_TYPE_S32); + *(int*)&none->numCols = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(none, 1, 1, 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return false when passed an image with negative numCols.\n"); + return 2; + } + *(int*)&none->numCols = 2; + *(int*)&none->numRows = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(none, 1, 1, 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return false when passed an image with negative numRows.\n"); + return 3; + } + + //Attempt to set a position in a psImage* with negative col0, row0 + *(int*)&none->numRows = 2; + none->row0 = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(none, 1, 1, 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return false when passed an image with negative col0.\n"); + return 4; + } + none->row0 = 0; + none->col0 = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(none, 1, 1, 1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return false when passed an image with negative col0.\n"); + return 5; + } + psFree(none); + + //Try to set a position inside of the subimage. + if ( !psImageSet(image, 14, 12, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return true when passed valid parameters.\n"); + return 6; + } + if (image->data.S32[2][4] != 666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to set the data values correctly. value=%d\n", image->data.S32[2][4]); + return 7; + } + //Try to set a position inside of the subimage from the tail. + if ( !psImageSet(image, -1, -1, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to return true when passed valid parameters.\n"); + return 8; + } else if (image->data.S32[3][4] != 666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageSet failed to set (from the tail) the data values correctly.\n"); + printf("\n value at 14,14 is %d\n", image->data.S32[3][4]); + return 9; + } + + //Try to set a position outside of the subimage but inside of the parent image. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(image, 0, 0, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSet failed to return false when passed an invalid location.\n"); + return 10; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(image, 9, 10, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSet failed to return false when passed an invalid location.\n"); + return 11; + } + + //Try to set a position outside of the subimage. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(image, 15, 14, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSet failed to return false when passed an invalid location.\n"); + return 12; + } + //Try to set a position outside of the subimage, indexing from the tail. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psImageSet(image, -6, -1, 666) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageSet failed to return false when passed an invalid location.\n"); + return 13; + } + + + psFree(image); + return 0; +} + +static psS32 testImageGet(void) +{ + psImage *image = NULL; + image = psImageAlloc(5, 3, PS_TYPE_S32); + + //Set the position of the subimage relative to the parent. + image->col0 = 10; + image->row0 = 10; + for (int i = 0; i < 3; i++) { + for (int j = 0; j < 5; j++) { + image->data.S32[i][j] = i+j; + } + } + + //Attempt to get a position in a NULL psImage* + psImage *none = NULL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(none, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return false when passed a NULL image.\n"); + return 1; + } + + //Attempt to get a position in a psImage* with negative numCols, numRows + none = psImageAlloc(2, 2, PS_TYPE_S32); + *(int*)&none->numCols = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(none, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return false when passed an image with negative numCols.\n"); + return 2; + } + *(int*)&none->numCols = 2; + *(int*)&none->numRows = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(none, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return false when passed an image with negative numRows.\n"); + return 3; + } + + //Attempt to get a position in a psImage* with negative col0, row0 + *(int*)&none->numRows = 2; + none->row0 = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(none, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return false when passed an image with negative col0.\n"); + return 4; + } + none->row0 = 0; + none->col0 = -1; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(none, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return false when passed an image with negative col0.\n"); + return 5; + } + psFree(none); + + //Try to get a position inside of the subimage. + if ( psImageGet(image, 14, 12) != 6 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return the correct value.\n"); + return 6; + } + //Try to get a position inside of the subimage from the tail. + if ( psImageGet(image, -1, -1) != 6 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psImageGet failed to return the correct value.\n"); + return 8; + } + + //Try to get a position outside of the subimage but inside of the parent image. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(image, 1, 1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageGet failed to return NAN when passed an invalid location.\n"); + return 10; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(image, 9, 10) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageGet failed to return NAN when passed an invalid location.\n"); + return 11; + } + + //Try to set a position outside of the subimage. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(image, 15, 14) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageGet failed to return NAN when passed an invalid location.\n"); + return 12; + } + //Try to set a position outside of the subimage, indexing from the tail. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !isnan( psImageGet(image, -6, -1) ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psImageGet failed to return NAN when passed an invalid location.\n"); + return 13; + } + + + psFree(image); + return 0; +} + Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psScalar.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psScalar.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psScalar.c (revision 12167) @@ -0,0 +1,138 @@ +/** @file tst_psScalar.c + * + * @brief Contains the tests for psScalar.[ch] + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ + * $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 testScalarAlloc(void); +static psS32 testScalarCopy(void); + +#define tstScalarAllocByType(datatype,value) \ +scalar = psScalarAlloc(value,PS_TYPE_##datatype); \ +if(scalar == NULL) { \ + psError(PS_ERR_UNKNOWN,true,"psScalarAlloc returned NULL."); \ + return 1+value; \ +} else { \ + if( (scalar->type.type != PS_TYPE_##datatype) && (scalar->data.datatype != value) ) { \ + psError(PS_ERR_UNKNOWN,true,"psScalarAlloc created object with unexpected type and/or value"); \ + return 2+value; \ + } \ +} \ +psFree(scalar); + +#define tstScalarCopyByType(datatype,value) \ +scalarOrig = psScalarAlloc(value,PS_TYPE_##datatype); \ +scalarCopy = psScalarCopy(scalarOrig); \ +if(scalarCopy == NULL) { \ + psError(PS_ERR_UNKNOWN,true,"psScalarCopy returned NULL."); \ + return 3+value; \ +} else { \ + if( (scalarCopy->type.type != scalarOrig->type.type) || (scalarCopy->data.datatype != scalarOrig->data.datatype) ) { \ + psError(PS_ERR_UNKNOWN,true,"psScalarCopy did not copy the original scalar by type and/or value"); \ + return 4+value; \ + } \ +} \ +psFree(scalarCopy); \ +psFree(scalarOrig); + +testDescription tests[] = { + {testScalarAlloc,783,"psScalarAlloc",0,false}, + {testScalarCopy,784,"psScalarCopy",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if ( ! runTestSuite(stderr,"psScalar",tests,argc,argv) ) { + psError(PS_ERR_UNKNOWN,true,"One or more tests failed"); + return 1; + } + return 0; +} + +psS32 testScalarAlloc(void) +{ + psScalar* scalar; + + psLogMsg(__func__,PS_LOG_INFO,"psScalarAlloc shall create scalar data objects"); + + // Verify the proper allocation/deallocation of scalar objects of valid types + tstScalarAllocByType(S8,10); + tstScalarAllocByType(U8,12); + tstScalarAllocByType(S16,14); + tstScalarAllocByType(U16,16); + tstScalarAllocByType(S32,18); + tstScalarAllocByType(U32,20); + tstScalarAllocByType(S64,22); + tstScalarAllocByType(U64,24); + tstScalarAllocByType(F32,26); + tstScalarAllocByType(F64,28); + tstScalarAllocByType(C32,30); + tstScalarAllocByType(C64,32); + + // Verify return is null for invalid scalar type + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + scalar = psScalarAlloc(true,PS_TYPE_BOOL); + if(scalar != NULL) { + psError(PS_ERR_UNKNOWN,true,"psScalarAlloc did not return null for invalid type"); + return 5; + } + + return 0; +} + +psS32 testScalarCopy(void) +{ + psScalar* scalarOrig; + psScalar* scalarCopy; + + psLogMsg(__func__,PS_LOG_INFO,"psScalarCopy shall copy scalar objects"); + + // Verify the proper copying of scalar objects for all valid types + tstScalarCopyByType(S8,100); + tstScalarCopyByType(U8,110); + tstScalarCopyByType(S16,120); + tstScalarCopyByType(U16,130); + tstScalarCopyByType(S32,140); + tstScalarCopyByType(U32,150); + tstScalarCopyByType(S64,160); + tstScalarCopyByType(U64,170); + tstScalarCopyByType(F32,180); + tstScalarCopyByType(F64,190); + tstScalarCopyByType(C32,200); + tstScalarCopyByType(C64,210); + + // Verify the return is null for invalid scalar type in the original + scalarOrig = psScalarAlloc(0,PS_TYPE_S8); + scalarOrig->type.type = PS_TYPE_BOOL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + scalarCopy = psScalarCopy(scalarOrig); + if(scalarCopy != NULL ) { + psError(PS_ERR_UNKNOWN,true,"psScalarCopy did not return NULL for invalid type"); + return 6; + } + psFree(scalarOrig); + + // Verify the return is null for null original scalar value + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + scalarCopy = psScalarCopy(NULL); + if(scalarCopy != NULL) { + psError(PS_ERR_UNKNOWN,true,"psScalarCopy did not return NULL for NULL argument"); + return 7; + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psVector.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psVector.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psVector.c (revision 12167) @@ -0,0 +1,648 @@ +/** @file tst_psVector.c + * + * @brief Test driver for psVector integer functions + * + * This test driver contains the following tests for psVector test point 1: + * A) Create S32 vector + * B) Add data to S32 vector + * C) Reallocate S32 vector bigger + * D) Reallocate S32 vector smaller + * E) Free S32 vector + * F) Attempt to create a S32 vector with zero size + * G) Attempt to realloc a null S32 vector + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-02 22:35:52 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 testVectorAlloc(void); +static psS32 testVectorRealloc(void); +static psS32 testVectorExtend(void); +static psS32 testVectorInit(void); +static psS32 testVectorCreate(void); +static psS32 testVectorCreateA(void); +static psS32 testVectorCreateB(void); +static psS32 testVectorGetSet(void); +static psS32 testVectorCountPixelMask(void); +static psS32 testVectorLength(void); +static psS32 testVectorCopy(void); + +testDescription tests[] = { + {testVectorAlloc,-1,"psVectorAlloc",0,false}, + {testVectorRealloc,-2,"psVectorRealloc",0,false}, + {testVectorExtend,-3,"psVectorExtend",0,false}, + {testVectorInit,-4,"psVectorInit",0,false}, + {testVectorCreate,-5,"psVectorCreate",0,false}, + {testVectorCreateA,-6,"psVectorCreateA",0,false}, + {testVectorCreateB,-7,"psVectorCreateB",0,false}, + {testVectorGetSet,-8,"psVectorGet/Set",0,false}, + {testVectorCountPixelMask,-9,"psVectorCountPixelMask",0,false}, + {testVectorLength,666,"psVectorLength",0,false}, + {testVectorCopy,667,"psVectorCopy",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + psLogSetFormat("HLNM"); + + if ( ! runTestSuite(stderr,"psVector",tests,argc,argv) ) { + return 1; + } + return 0; +} + +psS32 testVectorAlloc(void) +{ + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 1; + } + if (psVec->nalloc != 5) { + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 1; + } + if (psVec->n != 0) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 2; + } + + if (psVec->type.type != PS_TYPE_S32) { + fprintf(stderr,"Vector type = %d\n", psVec->type.type); + return 3; + } + if (psVec->type.dimen != PS_DIMEN_VECTOR) { + fprintf(stderr,"Vector dimen = %d\n", psVec->type.dimen); + return 4; + } + + // Test B - Add data to integer vector + for(psS32 i = 0; i < 5; i++) { + psVec->data.S32[i] = i*10; + } + + psVector* vecZero = psVectorAlloc(0, PS_TYPE_S32); + if(vecZero == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 5; + } + if (vecZero->nalloc != 0) { + fprintf(stderr,"Vector size = %ld\n", vecZero->nalloc); + return 6; + } + if (vecZero->n != vecZero->nalloc) { + fprintf(stderr,"Vector population = %ld\n", vecZero->n); + return 7; + } + + psLogMsg(__func__,PS_LOG_INFO, "Following should be an error."); + psVector* vecBogus = psVectorAlloc(10, 0); + if (vecBogus != NULL) { + fprintf(stderr,"Huh! bogus type generated a psVector?"); + return 20; + } + + psFree(psVec); + psFree(vecZero); + + return 0; +} + +psS32 testVectorRealloc(void) +{ + // create new psVector + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 30; + } + for(psS32 i = 0; i < 5; i++) { + psVec->data.S32[i] = i*10; + psVec->n++; + } + + // Test C - Reallocate S32 vector bigger + psVec = psVectorRealloc(psVec,10); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 1; + } + if (psVec->nalloc != 10) { + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 1; + } + if (psVec->n != 5) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 2; + } + + if (psVec->type.type != PS_TYPE_S32) { + fprintf(stderr,"Vector type = %d\n", psVec->type.type); + return 3; + } + if (psVec->type.dimen != PS_DIMEN_VECTOR) { + fprintf(stderr,"Vector dimen = %d\n", psVec->type.dimen); + return 4; + } + + for(psS32 i = 5; i < 10; i++) { + psVec->data.S32[i] = i*10; + psVec->n++; + } + + for(psS32 i = 0; i < 10; i++) { + if (psVec->data.S32[i] != i*10) { + fprintf(stderr,"Elem %d = %d, expected %d\n", i, + psVec->data.S32[i], i*10); + return 5; + } + } + + // Test D - Reallocate S32 vector smaller + psVec = psVectorRealloc(psVec,3); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 9; + } + if (psVec->nalloc != 3) { + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 10; + } + if (psVec->n != 3) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 11; + } + + for(psS32 i = 0; i < 3; i++) { + if (psVec->data.S32[i] != i*10) { + fprintf(stderr,"Elem %d = %d, expected %d\n", i, + psVec->data.S32[i], i*10); + return 12; + } + } + + psVec = psVectorRealloc(psVec,0); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 20; + } + if (psVec->nalloc != 0) { + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 21; + } + if (psVec->n != 0) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 22; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + psVector* vecBogus = psVectorRealloc(NULL, 6); + if (vecBogus != NULL) { + fprintf(stderr,"Huh! bogus type generated a psVector?"); + return 25; + } + + // Test E - Free S32 vector + psFree(psVec); + + return 0; +} + +psS32 testVectorExtend(void) +{ + // create new psVector + psVector *psVec = psVectorAlloc(5, PS_TYPE_S32); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 1; + } + + psVec->n = 0; + + psVec = psVectorExtend(psVec, 0, 2); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 2; + } + if (psVec->nalloc != 5) { // no growth should occur + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 3; + } + if (psVec->n != 2) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 4; + } + + psVec = psVectorExtend(psVec, 0, 2); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 10; + } + if (psVec->nalloc != 15) { // growth should occur + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 11; + } + if (psVec->n != 4) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 12; + } + + psVec = psVectorExtend(psVec, 0, -2); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 20; + } + if (psVec->nalloc != 15) { // no growth + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 21; + } + if (psVec->n != 2) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 22; + } + + psVec = psVectorExtend(psVec, 0, -20); + if (psVec == NULL) { + fprintf(stderr,"ERROR: Return is NULL\n"); + return 30; + } + if (psVec->nalloc != 15) { // no growth + fprintf(stderr,"Vector size = %ld\n", psVec->nalloc); + return 31; + } + if (psVec->n != 0) { + fprintf(stderr,"Vector population = %ld\n", psVec->n); + return 32; + } + + psFree(psVec); + + return 0; +} + +psS32 testVectorInit(void) +{ + psVector *in1 = NULL; + psVector *in2 = NULL; + psVector *in3 = NULL; + psVector *in4 = NULL; + psVector *in5 = NULL; + psVector *in6 = NULL; + psVector *in7 = NULL; + psVector *in8 = NULL; + psVector *in9 = NULL; + psVector *in10 = NULL; + psVector *in11 = NULL; + psVector *in12 = NULL; + int nalloc = 1; + in1 = psVectorAlloc(nalloc, PS_TYPE_U8); + in2 = psVectorAlloc(nalloc, PS_TYPE_U16); + in3 = psVectorAlloc(nalloc, PS_TYPE_U32); + in4 = psVectorAlloc(nalloc, PS_TYPE_U64); + in5 = psVectorAlloc(nalloc, PS_TYPE_S8); + in6 = psVectorAlloc(nalloc, PS_TYPE_S16); + in7 = psVectorAlloc(nalloc, PS_TYPE_S32); + in8 = psVectorAlloc(nalloc, PS_TYPE_S64); + in9 = psVectorAlloc(nalloc, PS_TYPE_F32); + in10 = psVectorAlloc(nalloc, PS_TYPE_F64); + in11 = psVectorAlloc(nalloc, PS_TYPE_C32); + in12 = psVectorAlloc(nalloc, PS_TYPE_C64); + psC32 vC32; + psC64 vC64; + + if ( !psVectorInit(in1, 1 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. U8 Case \n"); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psVectorInit(in2, PS_MAX_U64) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. U16 Case \n"); + } + if ( !psVectorInit(in3, 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. U32 Case \n"); + } + if ( !psVectorInit(in4, -1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. U64 Case \n"); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psVectorInit(in5, PS_MAX_S16 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. S8 Case \n"); + } + if ( !psVectorInit(in6, -100 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. S16 Case \n"); + } + if ( !psVectorInit(in7, 1 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. S32 Case \n"); + } + if ( !psVectorInit(in8, PS_MAX_U64 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. S64 Case \n"); + } + if ( !psVectorInit(in9, 1.1 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. F32 Case \n"); + } + if ( !psVectorInit(in10, 1.4 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. F64 Case \n"); + } + + vC32 = 1.23 + 1.19I; + vC64 = 2.13 + 2.31I; + if ( !psVectorInit(in11, vC32 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. C32 Case \n"); + } + if ( !psVectorInit(in12, vC64 ) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "VectorInit failed. C64 Case \n"); + } + + psFree(in1); + psFree(in2); + psFree(in3); + psFree(in4); + psFree(in5); + psFree(in6); + psFree(in7); + psFree(in8); + psFree(in9); + psFree(in10); + psFree(in11); + psFree(in12); + return 0; +} + +psS32 testVectorCreate(void) +{ + psVector *test = NULL; + psVector *test2 = NULL; + psVector *input = NULL; + psVector *input2 = psVectorAlloc(5, PS_TYPE_F32); + + test = psVectorCreate(input, 0.0, 10.0, 1.0, PS_TYPE_S32); + test2 = psVectorCreate(input2, 0.0, 5.0, 0.5, PS_TYPE_F32); + + for (int i = 0; i < 10; i++) { + if (test->data.S32[i] != i) { + fprintf(stderr, "Vector data does not match. i = %d, data=%d\n", + i, test->data.S32[i]); + return 1; + } + if (test2->data.F32[i] != i*0.5) { + fprintf(stderr, "Vector data does not match. i = %d, data=%f\n", + i, test->data.F32[i]); + return 1; + } + } + psFree(test); + psFree(test2); + return 0; +} +psS32 testVectorCreateA(void) +{ + // + // Test PS_TYPE_F64 + // PS_TYPE_S64 + // + psVector *test = NULL; + psVector *test2 = NULL; + psVector *input = NULL; + psVector *input2 = psVectorAlloc(5, PS_TYPE_F64); + + test = psVectorCreate(input, 0.0, 10.0, 1.0, PS_TYPE_S64); + test2 = psVectorCreate(input2, 0.0, 5.0, 0.5, PS_TYPE_F64); + + for (int i = 0; i < 10; i++) { + if (test->data.S64[i] != i) { + fprintf(stderr, "Vector data does not match. i = %d, data=%ld\n", + i, (long)test->data.S64[i]); + return 1; + } + if (test2->data.F64[i] != i*0.5) { + fprintf(stderr, "Vector data does not match. i = %d, data=%f\n", + i, test->data.F64[i]); + return 1; + } + } + psFree(test); + psFree(test2); + return 0; +} +psS32 testVectorCreateB(void) +{ + // + // Test PS_TYPE_U16 + // PS_TYPE_S16 + // + psVector *test = NULL; + psVector *test2 = NULL; + psVector *input = NULL; + psVector *input2 = psVectorAlloc(5, PS_TYPE_U16); + + test = psVectorCreate(input, 0.0, 10.0, 1.0, PS_TYPE_S16); + test2 = psVectorCreate(input2, 0.0, 20.0, 2.0, PS_TYPE_U16); + + for (int i = 0; i < 10; i++) { + if (test->data.S16[i] != i) { + fprintf(stderr, "Vector data does not match. i = %d, data=%d\n", + i, test->data.S16[i]); + return 1; + } + if (test2->data.U16[i] != i*2.0) { + fprintf(stderr, "Vector data does not match. i = %d, data=%d\n", + i, test->data.U16[i]); + return 1; + } + } + psFree(test); + psFree(test2); + return 0; +} +psS32 testVectorGetSet(void) +{ + psVector *vec = NULL; + vec = psVectorAlloc(5, PS_TYPE_S32); + vec->n = 0; + + if ( !psVectorSet(vec, 0, 10) ) { + fprintf(stderr, "VectorSet failed to set S32 at position 0\n"); + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psVectorSet(vec, 10, 10) ) { + fprintf(stderr, "VectorSet Improperly set S32 at out of range position\n"); + } + if ( !psVectorSet(vec, 1, 4) ) { + fprintf(stderr, "VectorSet Failed to set S32 at position 1\n"); + } + if ( (psS32)psVectorGet(vec, 0) != 10 ) { + fprintf(stderr, + "VectorGet Failed to return the correct S32 from position 0\n"); + } + if ( (psS32)psVectorGet(vec, -1) != 4 ) { + fprintf(stderr, + "VectorGet Failed to return the correct S32 from tail using -1\n"); + } + + psFree(vec); + return 0; +} + +psS32 testVectorCountPixelMask(void) +{ + long numPix = 0; + long numPix2 = 0; + psVector *vec = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + numPix = psVectorCountPixelMask(vec, 1); + if (numPix != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorCountPixelMask failed to return -1 for NULL Vector input.\n"); + return 1; + } + + numPix = 0; + vec = psVectorAlloc(5, PS_TYPE_S32); + psVector *vec2 = NULL; + vec2 = psVectorAlloc(5, PS_TYPE_U8); + vec->data.S32[0] = 0; + vec->data.S32[1] = 1; + vec->data.S32[2] = 0; + vec->data.S32[3] = 1; + vec->data.S32[4] = 0; + vec2->data.U8[0] = 0; + vec2->data.U8[1] = 1; + vec2->data.U8[2] = 0; + vec2->data.U8[3] = 1; + vec2->data.U8[4] = 0; + vec->n = 5; + vec2->n = 5; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + numPix = psVectorCountPixelMask(vec, 1); + numPix2 = psVectorCountPixelMask(vec2, 1); + + if (numPix != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorCountPixelMask failed to return -1 for wrong type of Vector input.\n"); + return 2; + } + if (numPix2 == -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorCountPixelMask returned -1 for correct Vector input\n"); + return 3; + } + if (numPix2 != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorCountPixelMask returned incorrect pixel count %d\n", numPix2); + return 4; + } + + psFree(vec); + psFree(vec2); + return 0; +} + +psS32 testVectorLength( void ) +{ + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + + if (psVectorLength(vector) != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorLength failed to return the correct length of vector.\n"); + return 1; + } + vector->n = 5; + if (psVectorLength(vector) != 5) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorLength failed to return the correct length of vector.\n"); + return 2; + } + vector->n++; + if (psVectorLength(vector) != 6) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorLength failed to return the correct length of vector.\n"); + return 3; + } + psFree(vector); + + psVector *emptyVector = NULL; + psArray *array = psArrayAlloc(5); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psVectorLength(emptyVector) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorLength failed to return -1 for a NULL input vector.\n"); + return 4; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psVectorLength((psVector*)array) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psVectorLength failed to return -1 for an invalid input vector.\n"); + return 5; + } + psFree(array); + + return 0; +} + +psS32 testVectorCopy(void) +{ + + psVector *in = NULL; + psVector *copy = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + copy = psVectorCopy(copy, in, PS_TYPE_F32); + if (copy != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorCopy failed to return a NULL vector for NULL input.\n"); + return 1; + } + + in = psVectorAlloc(5, PS_TYPE_F32); + in->n = 5; + for (int i = 0; i < 5; i++) { + in->data.F32[i] = i; + } + //Try copy of different type + copy = psVectorCopy(copy, in, PS_TYPE_F64); + if (copy == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorCopy returned a NULL vector for correct input.\n"); + return 2; + } else if (copy->data.F64[2] != 2.0) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorCopy failed to return the correct data values.\n"); + printf("\n copy->data.f64[2] = %lf, in->data.f32[2] = %f\n", copy->data.F64[2], + in->data.F32[2]); + return 3; + } + + copy = psVectorRecycle(copy, in->n + 2, PS_TYPE_F64); + //Try copy of same type and non-NULL outVector of different type and size. + copy = psVectorCopy(copy, in, in->type.type); + if (copy == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorCopy returned a NULL vector for correct input.\n"); + return 4; + } else if (copy->type.type != PS_TYPE_F32 || copy->data.F32[2] != 2.0) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorCopy failed to return the correct data values.\n"); + return 5; + } + + + psFree(in); + psFree(copy); + return 0; +} + Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_01.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_01.c (revision 12167) @@ -0,0 +1,200 @@ +/** @file tst_psVectorSort_01.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 1: + * A) Sort input vector to output vector for all types + * B) Sort input float vector into itself + * C) Attempt to sort vector with invalid type (i.e. PS_TYPE_BOOL) + * D) Sort input vector with zero items + * C) Free float vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-05 02:48:35 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define tstVectorSortByType(datatype,value) \ +in = psVectorAlloc(7,PS_TYPE_##datatype); \ +in->n = 7; \ +out = psVectorAlloc(7,PS_TYPE_##datatype); \ +out->n = 7; \ +in->data.datatype[0] = 7+value; \ +in->data.datatype[1] = 9+value; \ +in->data.datatype[2] = 3+value; \ +in->data.datatype[3] = 1+value; \ +in->data.datatype[4] = 5+value; \ +in->data.datatype[5] = 5+value; \ +in->data.datatype[6] = 0+value; \ +tempVec = out; \ +out = psVectorSort(out, in); \ +if(tempVec != out) { \ + psError(PS_ERR_UNKNOWN,true,"Return value not equal to orignal output argument passed to function"); \ + return 5; \ +} \ +if(out->data.datatype[0] != in->data.datatype[6]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[0] type %s",#datatype); \ + return 10; \ +} \ +if(out->data.datatype[1] != in->data.datatype[3]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[1] type %s",#datatype); \ + return 20; \ +} \ +if(out->data.datatype[2] != in->data.datatype[2]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[2] type %s",#datatype); \ + return 30; \ +} \ +if(out->data.datatype[3] != in->data.datatype[4]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[3] type %s",#datatype); \ + return 40; \ +} \ +if(out->data.datatype[4] != in->data.datatype[5]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[4] %s",#datatype); \ + return 50; \ +} \ +if(out->data.datatype[5] != in->data.datatype[0]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[5] %s",#datatype); \ + return 60; \ +} \ +if(out->data.datatype[6] != in->data.datatype[1]) { \ + psError(PS_ERR_UNKNOWN,true,"Improper sort out[6] %s",#datatype); \ + return 70; \ +} \ +psFree(in); \ +psFree(out); + + + +psS32 main(psS32 argc, + char* argv[]) +{ + psVector *in = NULL; + psVector *out = NULL; + psVector *tempVec = NULL; + + // Test A - Verify the sort for all supported types + printPositiveTestHeader(stdout,"psVectorSort","Sort all types"); + tstVectorSortByType(S8,0); + tstVectorSortByType(S16,1); + tstVectorSortByType(S32,2); + tstVectorSortByType(S64,3); + tstVectorSortByType(U8,4); + tstVectorSortByType(U16,5); + tstVectorSortByType(U32,6); + tstVectorSortByType(U64,7); + tstVectorSortByType(F32,8); + tstVectorSortByType(F64,9); + printFooter(stdout,"psVectorSort","Sort all types",true); + + // Test B - Sort input vector into itself + printPositiveTestHeader(stdout,"psVectorSort", "Sort input float vector into itself"); + in = psVectorAlloc(7, PS_TYPE_F32); + in->n = 7; + in->data.F32[0] = 0.7f; + in->data.F32[1] = 0.9f; + in->data.F32[2] = 0.3f; + in->data.F32[3] = 0.1f; + in->data.F32[4] = 0.5f; + in->data.F32[5] = 0.5f; + in->data.F32[6] = -2.0f; + in = psVectorSort(in, in); + if(in->data.F32[0] != -2.0f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[0]"); + return 100; + } + if(in->data.F32[1] != 0.1f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[1]"); + return 200; + } + if(in->data.F32[2] != 0.3f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[2]"); + return 300; + } + if(in->data.F32[3] != 0.5f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[3]"); + return 400; + } + if(in->data.F32[4] != 0.5f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[4]"); + return 500; + } + if(in->data.F32[5] != 0.7f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[5]"); + return 600; + } + if(in->data.F32[6] != 0.9f) { + psError(PS_ERR_UNKNOWN,true,"Improper self sort in[6]"); + return 700; + } + printFooter(stdout, "psVectorSort", "Sort input float vector into itself", true); + + // Test C - Attempt to sort vector with invalid type + printPositiveTestHeader(stdout,"psVectorSort","Invalid vector type"); + in->type.type = PS_TYPE_BOOL; + out = psVectorAlloc(7,PS_TYPE_F32); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error messgae"); + // printf("\nBefore call, tempVec = psVectorSort(out,in) \n"); + tempVec = psVectorSort(out,in); + // printf("\nAfter call, tempVec = psVectorSort(out,in) \n"); + if(tempVec != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL on error or didn't error?"); + return 33; + } + printFooter(stdout,"psVectorSort","Invalid vector type",true); + + // Test D - Sort vector with zero elements + printPositiveTestHeader(stdout,"psVectorSort","Sort zero element vector"); + // psFree(out); + // psFree(tempVec); + // out = NULL; + // tempVec = NULL; + out = psVectorAlloc(7,PS_TYPE_F32); + // tempVec = out; + in->n = 0; + out = psVectorSort(out,in); + // if(tempVec != out) { + // psError(PS_ERR_UNKNOWN,true,"Did not return the specified output vector"); + // return 44; + // } + if (out != NULL) { + if (out->n != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psVectorSort failed to correctly return a 0-length vector.\n"); + return 12; + } + } else { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "psVectorSort returned a NULL vector instead of expected vector with n=0.\n"); + return 13; + } + /* if(out->n != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not properly set the number of elements to zero"); + return 55; + } + */ + psFree(out); + printFooter(stdout,"psVectorSort","Sort zero element vector",true); + + + // Test D - Free float vectors + printPositiveTestHeader(stdout,"psVectorSort", "Free float vectors"); + psFree(in); + if ( psMemCheckLeaks(0, NULL, stdout, false)) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); + return 10; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psVectorSort", "Free float vectors", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_02.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_02.c (revision 12167) @@ -0,0 +1,178 @@ +/** @file tst_psVectorSort_02.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 2: + * A) Create vectors + * B) Sort integer vector of indices based on pre-sort order of floating point vector + * C) Attempt to sort with null input vector + * D) Sort with output vector which needs to be resized + * E) Sort input vector with zero elements + * F) Attempt to sort input vector with invalid type + * G) Free vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-03 00:27:51 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +#define tstVectorSortIndexByType(datatype,value) \ +in = psVectorAlloc( 5, PS_TYPE_##datatype ); \ +in->n = 5; \ +in->data.datatype[0] = 7+value; \ +in->data.datatype[1] = 9+value; \ +in->data.datatype[2] = 5+value; \ +in->data.datatype[3] = 1+value; \ +in->data.datatype[4] = 5+value; \ +out = psVectorSortIndex(out,in); \ +if(out->type.type != PS_TYPE_S32) { \ + psError(PS_ERR_UNKNOWN,true,"Output vector is not of type PS_TYPE_U32"); \ + return 1; \ +} \ +if(out->data.U32[0] != 3 ) { \ + psError(PS_ERR_UNKNOWN,true,"Improper index sort out[0] = %ld",out->data.U32[0]); \ +} \ +if(out->data.U32[1] != 2 ) { \ + psError(PS_ERR_UNKNOWN,true,"Improper index sort out[1] = %ld",out->data.U32[1]); \ +} \ +if(out->data.U32[2] != 4 ) { \ + psError(PS_ERR_UNKNOWN,true,"Improper index sort out[2] = %ld",out->data.U32[2]); \ +} \ +if(out->data.U32[3] != 0 ) { \ + psError(PS_ERR_UNKNOWN,true,"Improper index sort out[3] = %ld",out->data.U32[3]); \ +} \ +if(out->data.U32[4] != 1 ) { \ + psError(PS_ERR_UNKNOWN,true,"Improper index sort out[4] = %ld",out->data.U32[4]); \ +} \ +psFree(in); \ + +psS32 main(psS32 argc, + char* argv[]) +{ + psVector *in = NULL; + psVector *out = NULL; + psVector *tempVect = NULL; + + // Test A - Sort vectors by index for all types + printPositiveTestHeader(stdout,"psVectorSortIndex","Sort by index for all types"); + tstVectorSortIndexByType(S8,0) + tstVectorSortIndexByType(U8,1) + tstVectorSortIndexByType(S16,2) + tstVectorSortIndexByType(U16,3) + tstVectorSortIndexByType(S32,4) + tstVectorSortIndexByType(U32,5) + tstVectorSortIndexByType(S64,6) + tstVectorSortIndexByType(U64,7) + tstVectorSortIndexByType(F32,8) + tstVectorSortIndexByType(F64,9) + psFree(out); + printFooter(stdout,"psVectorSortIndex","Sort by index for all types",true); + + // Test C Attempt to sort with null input vector + printPositiveTestHeader(stdout,"psVectorSortIndex","Attempt to sort with NULL input"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message"); + in = NULL; + out = psVectorAlloc(5,PS_TYPE_U32); + out = psVectorSortIndex(out,in); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL input specified"); + return 111; + } + printFooter(stdout,"psVectorSortIndex","Attempt to sort with NULL input",true); + + // Test D Sort with output vector which needs to be resized + printPositiveTestHeader(stdout,"psVectorSortIndex","Sort with resize output vector"); + in = psVectorAlloc(5,PS_TYPE_U8); + for(psS32 m=0; m<5; m++) { + in->data.U8[m]= 20-m; + in->n++; + } + out = psVectorAlloc(3,PS_TYPE_U32); + out->n = 3; + out = psVectorSortIndex(out,in); + if(out->n != 5) { + psError(PS_ERR_UNKNOWN,true,"Did not properly resize output vector"); + return 112; + } + if(out->data.U32[0] != 4) { + psError(PS_ERR_UNKNOWN,true,"Did not properly sort index out[0] = %d",out->data.U32[0]); + return 113; + } + if(out->data.U32[1] != 3) { + psError(PS_ERR_UNKNOWN,true,"Did not properly sort index out[1] = %d",out->data.U32[1]); + return 114; + } + if(out->data.U32[2] != 2) { + psError(PS_ERR_UNKNOWN,true,"Did not properly sort index out[2] = %d",out->data.U32[2]); + return 115; + } + if(out->data.U32[3] != 1) { + psError(PS_ERR_UNKNOWN,true,"Did not properly sort index out[3] = %d",out->data.U32[3]); + return 116; + } + if(out->data.U32[4] != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not properly sort index out[4] = %d",out->data.U32[4]); + return 117; + } + psFree(in); + psFree(out); + printFooter(stdout,"psVectorSortIndex","Sort with resize output vector",true); + + // Test E - Sort input vector with zero elements + printPositiveTestHeader(stdout,"psVectorSortIndex","Sort with input vector with zero elements"); + in = psVectorAlloc(5,PS_TYPE_U8); + out = psVectorAlloc(5,PS_TYPE_U32); + in->n = 0; + out->n = 0; + tempVect = out; + out = psVectorSortIndex(out,in); + if ( out != tempVect ) { + psError(PS_ERR_UNKNOWN,true,"Did not return the same output vector"); + return 118; + } + in->n=5; + out->n=5; + psFree(out); + psFree(in); + printFooter(stdout,"psVectorSortIndex","Sort with input vector with zero elements",true); + + // Test F - Attempt to sort input vector with invalid type + printPositiveTestHeader(stdout,"psVectorSortIndex","Attempt to sort with invalid type"); + in = psVectorAlloc(5,PS_TYPE_U8); + out = psVectorAlloc(5,PS_TYPE_U32); + in->n = 5; + out->n = 5; + tempVect = out; + in->type.type = PS_TYPE_BOOL; + psLogMsg(__func__,PS_LOG_INFO,"Following should generate two error messages(psVectorSort,psVectorSortIndex)"); + out = psVectorSortIndex(out,in); + if( out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL on error or didn't error?"); + return 119; + } + in->type.type = PS_TYPE_U8; + psFree(in); + printFooter(stdout,"psVectorSortIndex","Attempt to sort with invalid type",true); + + // Test G - Free vectors + printPositiveTestHeader(stdout,"psVectorSortIndex", "Free vectors"); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + if(nLeaks) { + printf("ERROR: Found %d memory leaks\n", nLeaks); + return 222; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + return 333; + } + printFooter(stdout, "psVectorSort", "Free vectors", true); + +} Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_03.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_03.c (revision 12167) @@ -0,0 +1,84 @@ +/** @file tst_psVectorSort_03.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 3: + * A) Create float vectors of different sizes + * B) Attempt to sort vectors...should get errors + * C) Create float vector and double vector + * D) Attempt to sort vectors...should get errors + * E) Free float, double vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +psS32 main(psS32 argc, + char* argv[]) +{ + psVector *in = NULL; + psVector *out = NULL; + psVector *in2 = NULL; + psVector *out2 = NULL; + + // Test A - Create float vectors + printPositiveTestHeader(stdout,"psVectorSort", "Create float vectors of different sizes"); + in = psVectorAlloc(5, PS_TYPE_F32); + in->n = 5; + out = psVectorAlloc(6, PS_TYPE_F32); + out->n = 6; + in->n = 5; + for(psS32 i=0; i<5; i++) { + printf("arr[%d] = %f\n", i, in->data.F32[i]); + } + printFooter(stdout, "psVectorSort", "Create float vectors of different sizes", true); + + + // Test B - Sort input float vector and put results into output float vector + printNegativeTestHeader(stdout,"psVectorSort", "Sort float vector", + "Input and output vector sizes are not equal", 0); + out = psVectorSort(out, in); + printFooter(stdout, "psVectorSort", "Sort float vector", true); + + // Test C - Create float vector and double vector + printPositiveTestHeader(stdout,"psVectorSort","Create float & double vectors of same size"); + in2 = psVectorAlloc(5, PS_TYPE_F32); + in2->n = 5; + out2 = psVectorAlloc(5, PS_TYPE_F64); + out2->n = 5; + for(psS32 j=0; j<5; j++) { + printf("vec[%d] = %f\n", j, in2->data.F32[j]); + } + printFooter(stdout, "psVectorSort", "Create float and double vectors same size", true); + + // Test D - Attempt to sort vectors with output of different type should create error + printNegativeTestHeader(stdout,"psVectorSort", "Sort F32/F64 vector", + "Input and output vector different types", 0); + out2 = psVectorSort(out2, in2); + printFooter(stdout, "psVectorSort", "Sort float vector", true); + + // Test C - Free float vectors + printPositiveTestHeader(stdout,"psVectorSort", "Free float vectors"); + psFree(in); + psFree(in2); + psFree(out); + psFree(out2); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + if(nLeaks) { + printf("ERROR: Found %d memory leaks\n", nLeaks); + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psVectorSort", "Free float vectors", true); + +} Index: /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_04.c =================================================================== --- /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/mathtypes/tst_psVectorSort_04.c (revision 12167) @@ -0,0 +1,47 @@ +/** @file tst_psVectorSort_04.c + * + * @brief Test driver for psVectorSort functions + * + * This test driver contains the following tests for psVectorSort test point 4: + * A) Attempt to sort with null input vector + * B) Free vectors + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:00 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +psS32 main(psS32 argc, + char* argv[]) +{ + psVector *badIn = NULL; + psVector *goodOut = psVectorAlloc(5, PS_TYPE_F32); + + // Test A - Attempt to sort with null input vector + printNegativeTestHeader(stdout,"psVectorSort", "Attempt to sort with null input vector", + "Null input vector", 0); + goodOut = psVectorSort(goodOut, badIn); + printFooter(stdout, "psVectorSort", "Attempt to sort with null input vector", true); + + // Test B - Free vectors + printPositiveTestHeader(stdout, "psVectorSort", "Free vectors"); + psFree(goodOut); + psS32 nLeaks = psMemCheckLeaks(0, NULL, stdout, false); + if(nLeaks) { + printf("ERROR: Found %d memory blocks\n", nLeaks); + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psVectorSort", "Free arays", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/pstap/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/pstap/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/.cvsignore (revision 12167) @@ -0,0 +1,3 @@ +Makefile +Makefile.in +.deps Index: /branches/rel-1-1/psLib/test/pstap/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/pstap/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/Makefile.am (revision 12167) @@ -0,0 +1,1 @@ +SUBDIRS = src Index: /branches/rel-1-1/psLib/test/pstap/src/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/pstap/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/src/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +.deps +.libs +libpstap.la +pstap.lo Index: /branches/rel-1-1/psLib/test/pstap/src/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/pstap/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/src/Makefile.am (revision 12167) @@ -0,0 +1,12 @@ +AM_CPPFLAGS = $(SRCINC) -I$(top_srcdir)/test/tap/src $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(PSLIB_LIBS) + +TEST_LTLIBS = libpstap.la +libpstap_la_SOURCES = pstap.c +noinst_HEADERS = pstap.h + +noinst_LTLIBRARIES = $(TEST_LTLIBS) + Index: /branches/rel-1-1/psLib/test/pstap/src/pstap.c =================================================================== --- /branches/rel-1-1/psLib/test/pstap/src/pstap.c (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/src/pstap.c (revision 12167) @@ -0,0 +1,6 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include Index: /branches/rel-1-1/psLib/test/pstap/src/pstap.h =================================================================== --- /branches/rel-1-1/psLib/test/pstap/src/pstap.h (revision 12167) +++ /branches/rel-1-1/psLib/test/pstap/src/pstap.h (revision 12167) @@ -0,0 +1,134 @@ +#include + +#include "tap.h" + +#define done() ok(psMemCheckLeaks(0, NULL, stdout, false) == 0, "Memory Leaks"); \ +return exit_status() + + # define mem() ok(psMemCheckLeaks(psMemGetLastId(), NULL, stdout, false) == 0, "Memory Leaks") + + # define checkLeaks false + + # define checkMem() if(checkLeaks) mem() + + # ifdef __GNUC__ + + // write a comment which is counted as a test (and swallowed by prove) + # define note(A, ...){ \ + fprintf(stdout, A, ## __VA_ARGS__); \ + fprintf(stdout, "\n[%s:%d in %s]\n", __FILE__, __LINE__, __func__); } + + // write a comment which is counted as a test (and swallowed by prove) + # define noted(A, ...) _gen_result(1, __func__, __FILE__, __LINE__, A, ## __VA_ARGS__); + +// use to test the value of a float +# define ok_float(VALUE,EXPECT,COMMENT, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < FLT_EPSILON), COMMENT, ## __VA_ARGS__); + +// use to test the value of a double +# define ok_double(VALUE,EXPECT,COMMENT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < DBL_EPSILON), COMMENT, ## __VA_ARGS__); + +// use to test the value of a float within a defined tolerance +# define ok_float_tol(VALUE,EXPECT,TOL,COMMENT, ...)\ +{ \ + bool status = (fabsf((VALUE) - (EXPECT)) < (TOL)); \ + ok(status, COMMENT, ## __VA_ARGS__); \ + if (!status) { \ + diag(" got: '%f'", VALUE); \ + diag(" expected: '%f' +/- %f", EXPECT, TOL); \ + } \ +} + +// use to test the value of a double within a defined tolerance +# define ok_double_tol(VALUE,EXPECT,TOL,COMMENT, ...)\ +{ \ + bool status = (fabs((VALUE) - (EXPECT)) < (TOL)); \ + ok(status, COMMENT, ## __VA_ARGS__); \ + if (!status) { \ + diag(" got: '%f'", VALUE); \ + diag(" expected: '%f' +/- %f", EXPECT, TOL); \ + } \ +} + +# define ok_str(VALUE, EXPECT, COMMENT, ...) \ +{ \ + int cmp = (strcmp(VALUE, EXPECT) == 0); \ + ok(cmp, COMMENT, ## __VA_ARGS__); \ + if (!cmp) { \ + diag(" got: '%s'", VALUE); \ + diag(" expected: '%s'", EXPECT); \ + } \ +} + +# define ok_strn(VALUE, EXPECT, N, COMMENT, ...)\ +{ \ + int cmp = (strncmp(VALUE, EXPECT, N) == 0); \ + ok(cmp, COMMENT, ## __VA_ARGS__); \ + if (!cmp) { \ + diag(" got: '%s'", VALUE); \ + diag(" expected: '%s'", EXPECT); \ + } \ +} + +#elif __STDC_VERSION__ >= 199901L /* __GNUC__ */ + +// write a comment which is counted as a test (and swallowed by prove) +// write a comment which is counted as a test (and swallowed by prove) +# define note(A, ...){ \ + fprintf(stdout, A, ...); \ + fprintf(stdout, "\n[%s:%d in %s]\n", __FILE__, __LINE__, __func__); } + +// use to test the value of a float +# define ok_float(VALUE,EXPECT, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < FLT_EPSILON), __VA_ARGS__); + +// use to test the value of a double +# define ok_double(VALUE,EXPECT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < DBL_EPSILON), __VA_ARGS__); + +// use to test the value of a float +# define ok_float_tol(VALUE,EXPECT,TOL, ...)\ +{ \ + bool status = (fabsf((VALUE) - (EXPECT)) < (TOL)); \ + ok(status, __VA_ARGS__); \ + if (!status) { \ + diag(" got: '%f'", VALUE); \ + diag(" expected: '%f' +/- %f", EXPECT, TOL); \ + } \ +} + +// use to test the value of a double +# define ok_double_tol(VALUE,EXPECT,TOL, ...)\ +{ \ + bool status = (fabs((VALUE) - (EXPECT)) < (TOL)); \ + ok(status, __VA_ARGS__); \ + if (!status) { \ + diag(" got: '%f'", VALUE); \ + diag(" expected: '%f' +/- %f", EXPECT, TOL); \ + } \ +} + +# define ok_str(VALUE, EXPECT, ...) \ +{ \ + int cmp = (strcmp(VALUE, EXPECT) == 0); \ + ok(cmp, COMMENT, __VA_ARGS__); \ + if (!cmp) { \ + diag(" got: '%s'", VALUE); \ + diag(" expected: '%s'", EXPECT); \ + } \ +} + +# define ok_strn(VALUE, EXPECT, N, ...)\ +{ \ + int cmp = (strncmp(VALUE, EXPECT, N) == 0); \ + ok(cmp, COMMENT, __VA_ARGS__); \ + if (!cmp) { \ + diag(" got: '%s'", VALUE); \ + diag(" expected: '%s'", EXPECT); \ + } \ +} + +#else /* __STDC_VERSION__ */ +# error "Needs gcc or C99 compiler for variadic macros." +#endif /* __STDC_VERSION__ */ Index: /branches/rel-1-1/psLib/test/sys/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/sys/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/.cvsignore (revision 12167) @@ -0,0 +1,24 @@ +temp +.deps +.libs +Makefile +Makefile.in +log.txt +log2.txt +tst_psAbort +tst_psConfigure +tst_psError +tst_psLogMsg +tst_psMemory +tst_psString +tst_psTrace +tst_psTrace02_OUT +test.fits +core +core.* +tap_psStringSubstitute +tst_psLine +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/sys/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/sys/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/Makefile.am (revision 12167) @@ -0,0 +1,31 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = \ + tap_psString \ + tap_psTrace \ + tap_psError \ + tap_psMemory \ + tap_psLine \ + tap_psConfigure \ + tap_psStringSubstitute + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +CLEANFILES = $(check_DATA) temp/* log.txt log2.txt test.fits tst_psTrace02_OUT \ + core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/sys/table.fits =================================================================== --- /branches/rel-1-1/psLib/test/sys/table.fits (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/table.fits (revision 12167) @@ -0,0 +1,1 @@ +END Index: /branches/rel-1-1/psLib/test/sys/tableF32.dat =================================================================== --- /branches/rel-1-1/psLib/test/sys/tableF32.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tableF32.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + 1.009 4 8 16 -1 -4 -8 -16 0 -1.0 +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/sys/tap_psConfigure.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psConfigure.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psConfigure.c (revision 12167) @@ -0,0 +1,48 @@ +/** @file tst_psConfigure.c + * + * @brief Test driver for psconfigure functions + * + * This test driver contains the following test points for psConfigure + * functions. + * 1) Return current psLib version + * + * Return: Number of test points which failed + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 22:50:18 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib.h" +#include "tap.h" +#include "pstap.h" +#include "string.h" + + +static psS32 psLibVersion00(void); + + +psS32 main(psS32 argc, char* argv[]) +{ + plan_tests(1); + + psLibVersion00(); +} + + +static psS32 psLibVersion00(void) +{ + diag("psLibVersion00"); + + char *stringVal = NULL; + stringVal = psLibVersion(); + ok( stringVal != NULL && strlen(stringVal), "Version is cool"); + psFree(stringVal); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/sys/tap_psError.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psError.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psError.c (revision 12167) @@ -0,0 +1,402 @@ +/** @file tst_psError.c + * + * @brief Test driver for psError function + * + * This test driver contains the following test points for psError + * testError00 - psError() (Testpoint #486) + * testError01 - psErrorMsg(), psErrorStackPrint() (Testpoint #725) + * testError02 - psErrorStackPrintV() (Testpoint #726) + * testError03 - psErrorGet(), psErrorLast() (Testpoint #727) + * testError04 - psErrorClear() (Testpoint #728) + * testError05 - psErrorCodeString() (Testpoint #729) + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-06 04:09:55 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include +#include +#include "pslib.h" +#include "tap.h" +#include "pstap.h" + +// Function used in testError02 to verify the psErrorStackPrintV function +static void myErrorStackPrint(FILE *fd, + const char *fmt, + ...) +{ + va_list ap; + + // Test whether psErrorStackPrintV() accept a va_list for output variables + va_start(ap, fmt); + psErrorStackPrintV(fd, fmt, ap); + va_end(ap); +} + + +static psS32 testError00(void) +{ + diag("testError00"); + + psS32 intval=1; + psS64 longval = 2; + float floatval = 3.01; + char charval = 'E'; + char *stringval = "E R R O R"; + + // Test point #1 Multiple type values placed in the error string + psError(PS_ERR_UNKNOWN, true, + "ALL TYPES intval = %d longval = %lld floatval = %f charval = %c strval = %s", + intval,longval,floatval,charval,stringval); + + // Test point #2 String values in error message + psError(PS_ERR_UNKNOWN, true, "NO VALUES"); + + // Test point #3 Empty strings in error message + psError(PS_ERR_UNKNOWN, true, " "); + + return 0; +} + + +static psS32 testError01(void) +{ + diag("testError01"); + + psErrorCode code=PS_ERR_BAD_PARAMETER_VALUE; + + // Verify the return value of psErrorMsg is the psErrorCode passed + ok ( psError(code, true, "Error code = %d", code) == code, + "Failed return value verify."); + skip_start ( psError(code, true, "Error code = %d", code) != code, + 4, "Failed return value verify."); + + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1A"); + + // test1B empty string in for name argument + ok ( psError(code+1, true, "Error code = %d", code+1) == code+1, + "Failed return with empty string."); + skip_start ( psError(code+1, true, "Error code = %d", code+1) != code+1, + 3, "Failed return with empty string."); + + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1B"); + + // test1D undefined code + ok ( psError(-1, true, "Error code = %d", -1) == -1, + "Failed return with undefined code."); + skip_start ( psError(-1, true, "Error code = %d", -1) != -1, + 2, "Failed return with undefined code."); + + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1D"); + + // test1E set psErrorMsg argument to false + ok( psError(code, false, "Error code = %d", code) == code, + "Failed return with false new arg."); + skip_start( psError(code, false, "Error code = %d", code) != code, + 1, "Failed return with false new arg."); + + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1E"); + + // test1F psErrorMsg with a error code less then PS_ERR_BASE(256) + ok( psError(9, true, "Errno code = %d", 9) == 9, "Error Code" ); + + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1F"); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + return 0; +} + + +static psS32 testError02(void) +{ + diag("testError02"); + + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + + // Generate error message and verify return value + ok (psError(code, true, "Error code = %d", code) == code, + "Failed return value verify."); + + myErrorStackPrint(stderr,"ERROR STACK PRINT Test%dA",2); + + return 0; +} + + +static psS32 testError03(void) +{ + diag("testError03"); + + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + psErr *last = NULL; + psErr *getErr = NULL; + + // Attempt to get last error message with an empty stack verify psErr with code PS_ERR_NONE + last = psErrorLast(); + ok(last->code == PS_ERR_NONE, + "psErrorLast did return PS_ERR_NONE for empty stack (%d)", last->code); + skip_start(last->code == PS_ERR_NONE, + 9, "psErrorLast did return PS_ERR_NONE for empty stack"); + + psFree(last); + + // HEY + // Attempt to get specific error message with empty stack verify psErr with code PS_ERR_NONE + getErr= psErrorGet(2); + ok(getErr->code == PS_ERR_NONE, + "psErrorGet did not return PS_ERR_NONE for empty stack (%d)", getErr->code); + skip_start(getErr->code == PS_ERR_NONE, + 8, "psErrorGet did not return PS_ERR_NONE for empty stack"); + + psFree(getErr); + + // Attempt to get error message with invalid index and an empty stack + getErr= psErrorGet(-1); + ok(getErr->code == PS_ERR_NONE, + "psErrorGet with invalid index/empty stack"); + skip_start(getErr->code != PS_ERR_NONE, + 7, "psErrorGet with invalid index/empty stack"); + + psFree(getErr); + + // Generate three error messages + ok (psError(code, true, "Error code = %d", code) == code, + "return value verify-1."); + skip_start (psError(code, true, "Error code = %d", code != code), + 6, "return value verify-2."); + + ok (psError((code+1), false, "Error code = %d", (code+1)) == (code+1), + "Failed return value verify-3."); + skip_start (psError((code+1), false, "Error code = %d", (code+1))!=(code+1), + 5, "Failed return value verify-4."); + + ok (psError((code+2), false, "Error code = %d", (code+2)) == (code+2), + "Failed return value verify-5."); + skip_start (psError((code+2), false, "Error code = %d", (code+2))!=(code+2), + 4, "Failed return value verify-6."); + + last = psErrorLast(); + getErr= psErrorGet(0); + + // Check that last and get with 0 index are equal + ok(last == getErr, "psErrorGet(0) equal to psErrorLast"); + skip_start(last != getErr, 3, "psErrorGet(0) equal to psErrorLast"); + + psFree(last); + + // Verify the last error message was returned + ok ( getErr->code == (code+2), + "psErrorLast() did not retrieve last error"); + skip_start ( getErr->code != (code+2), + 2, "psErrorLast() did not retrieve last error"); + + psFree(getErr); + + // Verify the middle error message can be retrieved + getErr= psErrorGet(1); + ok ( getErr->code == (code+1), + "psErrorGet() did not retrieve proper error"); + skip_start ( getErr->code != (code+1), + 1, "psErrorGet() did not retrieve proper error"); + + psFree(getErr); + + // Verify the psErrorGet returns NULL if an invalid index is given + getErr= psErrorGet(-1); + ok ( getErr->code == PS_ERR_NONE, + "psErrorGet() did not return PS_ERR_NONE w/ invalid arg"); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + psFree(getErr); + + return 0; +} + + +static psS32 testError04(void) +{ + diag("testError04"); + + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + psErr *last = NULL; + psErr *lastAfterClear = NULL; + + // With an attemp error stack call psErrorClear + psErrorClear(); + + // Get the last error message and verify PS_ERR_NONE (empty stack) + lastAfterClear = psErrorLast(); + ok(lastAfterClear->code == PS_ERR_NONE, "psErrorLast return expected."); + skip_start(lastAfterClear->code != PS_ERR_NONE, + 5, "psErrorLast return expected."); + + psFree(lastAfterClear); + + // Generate three error messages to have messages on error stack + ok (psError(code, true, "Error code = %d", code) == code, + "Failed return value verify."); + skip_start (psError(code, true, "Error code = %d", code) != code, + 4, "Failed return value verify."); + + ok (psError((code+1), false, "Error code = %d", (code+1)) == (code+1), + "Failed return value verify."); + skip_start (psError((code+1), false, "Error code = %d", (code+1))!=(code+1), + 3, "Failed return value verify."); + + ok (psError((code+2), false, "Error code = %d", (code+2)) == (code+2), + "Failed return value verify."); + skip_start (psError((code+2), false, "Error code = %d", (code+2))!=(code+2), + 2, "Failed return value verify."); + + // Get the last error message and verify it has the expected code + last = psErrorLast(); + ok(last->code == (code+2), "psErrorLast return expected."); + skip_start(last->code != (code+2), 1, "psErrorLast return expected."); + + psFree(last); + + // Clear the error stack + psErrorClear(); + + // Get the last error message after clear and verify is has PS_ERR_NONE code + lastAfterClear = psErrorLast(); + ok(lastAfterClear->code == PS_ERR_NONE, "psErrorLast return expected."); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + psFree(lastAfterClear); + + return 0; +} + + +static psS32 testError05(void) +{ + diag("testError05"); + + // Verify the return value of psErrorCodeString + // psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + // psLogMsg("tst_psError05", PS_LOG_INFO, psErrorCodeString(code)); + + // Verify the return value of psErrorCodeString if code is negative + ok( psErrorCodeString(-1) == NULL, "error string with neg. code"); + + return 0; +} + + +static psS32 testErrorRegister(void) +{ + diag("testErrorRegister"); + + psS32 numErr = 4; + psErrorDescription errDesc[] = { {PS_ERR_N_ERR_CLASSES+1,"first"}, + {PS_ERR_N_ERR_CLASSES+2,"second"}, + {PS_ERR_N_ERR_CLASSES+3,"third"}, + {PS_ERR_N_ERR_CLASSES+4,"fourth"} }; + /* + 1. invoke psErrorRegister with a n>1 array of psErrorDescriptions. Verify that: + a. Each error description given is retrievable with psErrorCodeString. + */ + psErrorRegister(errDesc,numErr); + + for (psS32 i = 0; i < numErr; i++) { + const char* desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES+1+i); + ok (desc != NULL, + "psErrorCode didn't find registered error code."); + + ok (strcmp(desc,errDesc[i].description) == 0, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", desc,errDesc[i].description); + } + + /* + 2. invoke psErrorCodeString with a static/builtin psLib error code. Verify: + a. the result is correct. + */ + const char* desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES); + ok (desc != NULL, "psErrorCode didn't find static error code."); + ok (strcmp(desc,"error classes end marker") == 0, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", + desc,"error classes end marker"); + + desc = psErrorCodeString(PS_ERR_NONE); + ok (desc != NULL, + "psErrorCode didn't find static error code."); + ok (strcmp(desc,"not an error") == 0, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", + desc,"not an error"); + + /* + 3. invoke psErrorCodeString with an invalid code. Verify a NULL is returned. + */ + desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES+numErr+1); + ok (desc == NULL, + "psErrorCode didn't return a NULL with a bogus input code."); + + /* + 4. invoke psErrorRegister with a NULL psErrorDescription. Verify that: + a. the execution does not cease. + b. an appropriate error is generated. + */ + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + psErrorClear(); + psErrorRegister(NULL,1); + psErr* err = psErrorLast(); + ok (err->code == PS_ERR_BAD_PARAMETER_NULL, + "psErrorCode didn't generate proper error code for NULL input."); + + psFree(err); + + /* + 5. invoke psErrorRegister with nerror=0. Verify that no error occurs. + */ + psErrorClear(); + psErrorRegister(errDesc,0); + err = psErrorLast(); + ok (err->code == PS_ERR_NONE, + "psErrorCode generated an error for nErrors = 0."); + + psFree(err); + return 0; +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + plan_tests(38); + + // XXX: testError03() fails if we put it in sequence with the others. + testError03(); + testError00(); + testError01(); + testError02(); + testError04(); + testError05(); + testErrorRegister(); +} + + Index: /branches/rel-1-1/psLib/test/sys/tap_psLine.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psLine.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psLine.c (revision 12167) @@ -0,0 +1,145 @@ +/** @file tst_psLine.c + * + * @brief Test driver for psLine functions + * + * @author dRob, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 22:43:26 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib.h" +#include "tap.h" +#include "pstap.h" +#include "string.h" + +static psS32 testLineAlloc(void); +static psS32 testLineInit(void); +static psS32 testLineAdd(void); +static psS32 testLineChk(void); + + +psS32 main( psS32 argc, char* argv[] ) +{ + plan_tests(12); + + testLineAlloc(); + testLineInit(); + testLineAdd(); + testLineChk(); +} + +psS32 testLineAlloc(void) +{ + diag("testLineAlloc"); + + psLine *lineline = NULL; + lineline = psLineAlloc(20); + + ok (lineline->NLINE==20, "psLine set NLINE parameter during Allocation"); + skip_start (lineline->NLINE != 20, + 2, "psLine set NLINE parameter during Allocation"); + + ok (lineline->Nline == 0, + "psLine set Nline parameter during Allocation\n"); + skip_start (lineline->Nline == 0, + 1, "psLine set Nline parameter during Allocation\n"); + + strncpy(lineline->line, "Hello World", 20); + ok (!strncmp(lineline->line, "Hello World", 20), + "psLine was stored a simple string!\n"); + + skip_end(); + skip_end(); + + psFree(lineline); + + return 0; +} + +psS32 testLineInit(void) +{ + diag("testLineInit"); + + psLine *line = NULL; + //Return false for NULL input + int okay = !psLineInit(line); + ok (okay, "psLineInit. Expected false for NULL psLine input.\n"); + skip_start (!okay, 2, "psLineInit. Expected NULL psLine input.\n"); + + //Allocate a line and return true on Init + line = psLineAlloc(1); + okay = psLineInit(line); + ok( okay, "psLineInit. Expected true for valid psLine input.\n"); + skip_start( !okay, 1, "psLineInit. Expected true for valid psLine input."); + + ok (line->NLINE == 1 && line->Nline == 0, + "psLineInit returned line parameters."); + + skip_end(); + skip_end(); + + psFree(line); + + return 0; +} + + +psS32 testLineAdd(void) +{ + diag("testLineAdd"); + + psLine *line = NULL; + //Return false for NULL input + ok (!psLineAdd(line, "Hello World"), + "psLineAdd. Expected false for NULL psLine input."); + skip_start(psLineAdd(line, "Hello World"), + 3, "psLineAdd. Expected false for NULL psLine input."); + + //Allocate and return true for valid input. + line = psLineAlloc(20); + int okay = psLineAdd(line, "Hello %s", "World"); + ok( okay, "psLineAdd. Expected true for valid psLine input.\n"); + skip_start( !okay, 2, "psLineAdd.Expected true for valid psLine input.\n"); + + ok (line->NLINE == 20 && line->Nline == 11, + "psLineAdd failed to return the correct line parameters.\n"); + skip_start (line->NLINE != 20 || line->Nline != 11, + 1,"psLineAdd failed to return the correct line parameters.\n"); + + ok (!strncmp(line->line, "Hello World", 20), + "psLineAdd failed to store the correct line string."); + + skip_end(); + skip_end(); + skip_end(); + + psFree(line); + + return 0; +} + +psS32 testLineChk(void) +{ + diag("testLineChk"); + + psLine *line = NULL; + //Return false for Null input line + ok (!psMemCheckLine(line), + "psMemCheckLine return false for NULL line input.\n"); + skip_start (psMemCheckLine(line), + 1, "psMemCheckLine return false for NULL line input.\n"); + + line = psLineAlloc(1); + ok (psMemCheckLine(line), + "psMemCheckLine return true for valid line input.\n"); + + psFree(line); + + skip_end(); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tap_psMemory.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psMemory.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psMemory.c (revision 12167) @@ -0,0 +1,821 @@ +/** @file tst_psMemory.c +* +* @brief Contains the tests for psMemory.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-06 20:31:57 $ +* +* XXXX: Several tests fail with an Abort and are commented out. +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include +#include +#include +#include +#include +#include + + +#include "pslib.h" // need to allow malloc for callback use +#include "tap.h" +#include "pstap.h" + +static psS32 problemCallbackCalled = 0; +static psS32 allocCallbackCalled = 0; +static psS32 freeCallbackCalled = 0; +static psS32 exhaustedCallbackCalled = 0; + +psMemId memAllocCallback( const psMemBlock *ptr ); +psMemId memFreeCallback( const psMemBlock *ptr ); +psS32 memCheckTypes( void ); +void memProblemCallback( psMemBlock *ptr, const char *filename, unsigned int lineno ); +psPtr TPOutOfMemoryExhaustedCallback( size_t size ); + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(15); + + void TPFreeReferencedMemory( void ); + if (1) { + TPFreeReferencedMemory(); + } + + void TPOutOfMemory( void ); + ok(false, "XXXX: Skipping TPOutOfMemory() because of test abort failure"); + if (0) { + TPOutOfMemory(); + } + + void TPReallocOutOfMemory( void ); + ok(false, "XXXX: Skipping TPReallocOutOfMemory() because of test abort failure"); + if (0) { + TPReallocOutOfMemory(); + } + + void TPCheckBufferPositive( void ); + if (1) { + TPCheckBufferPositive(); + } + + void TPrealloc( void ); + if (1) { + TPrealloc(); + } + + void TPallocCallback( void ); + if (1) { + TPallocCallback(); + } + + void TPcheckLeaks( void ); + ok(false, "XXXX: Skipping TPcheckLeaks() because of test abort failure"); + if (0) { + TPcheckLeaks(); + } + + // psMemProblemCallbackSet() has been removed -JH + ok(false, "XXXX: Skipping psMemProblemCallbackSet() because of test abort failure"); + #if 0 + + void TPmemCorruption( void ); + if (1) { + TPmemCorruption(); + } + #endif + + void TPmultipleFree( void ); + ok(false, "XXXX: Skipping TPmultipleFree() because of test abort failure"); + if (0) { + TPmultipleFree(); + } +} + +// Testpoint #449, psAlloc shall allocate memory blocks writeable by caller. +void TPCheckBufferPositive( void ) +{ + diag("TPCheckBufferPositive"); + + psS32 * mem; + const psS32 size = 100; + psS32 failed = 0; + + mem = ( psS32* ) psAlloc( size * sizeof( psS32 ) ); + ok ( mem != NULL, "psAlloc returned non-NULL value" ); + + for ( psS32 index = 0;index < size;index++ ) { + mem[ index ] = index; + } + + for ( psS32 index = 0;index < size;index++ ) { + if ( mem[ index ] != index ) { + failed++; + } + } + ok( failed == 0, "mem legit" ); + + psFree( mem ); +} + +void TPFreeReferencedMemory( void ) +{ + diag("TPFreeReferencedMemory"); + + // create memory + psS32 * mem; + psS32 ref = 0; + + mem = ( psS32* ) psAlloc( 100 * sizeof( psS32 ) ); + + ref = psMemGetRefCounter( mem ); + ok ( ref == 1, "buffer reference count %d.", ref ); + skip_start ( ref != 1, 3, "buffer reference count %d.", ref ); + + psMemIncrRefCounter( mem ); + psMemIncrRefCounter( mem ); + psMemIncrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + ok ( ref == 4, "buffer reference count was %d.", ref ); + skip_start ( ref != 4, 2, "buffer reference count was %d.", ref ); + + psMemDecrRefCounter( mem ); + psMemDecrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + ok ( ref == 2, "Found buffer reference count to be %d.", ref ); + skip_start ( ref != 2, 1, "Found buffer reference count to be %d.", ref ); + + psMemDecrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + ok ( ref == 1, "Found buffer reference count to be %d.", ref ); + + skip_end(); + skip_end(); + skip_end(); + + psFree( mem ); +} + +// Bug/Task #562 regression test. Upon requesting more memory than is available, psRealloc shall call +// the psMemExhaustedCallback. +void TPReallocOutOfMemory( void ) +{ + diag("TPReallocOutOfMemory"); + + psS32 * mem[ 100 ]; + psMemExhaustedCallback cb; + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = NULL; + } + + exhaustedCallbackCalled = 0; + + cb = psMemExhaustedCallbackSet( TPOutOfMemoryExhaustedCallback ); + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psAlloc( 10 ); + } + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psRealloc( mem[ lcv ], SIZE_MAX/2 - 1000 ); + } + + psMemExhaustedCallbackSet( cb ); + + ok ( exhaustedCallbackCalled != 0, + "Called psRealloc with HUGE memory requirement and survived in %s!", __func__ ); + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + psFree( mem[ lcv ] ); + } +} + + +// Testpoint #450, Upon requesting more memory than is available, psalloc shall call +// the psMemExhaustedCallback. +void TPOutOfMemory( void ) +{ + diag("TPOutOfMemory"); + + psS32 * mem[ 100 ]; + psMemExhaustedCallback cb; + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = NULL; + } + + exhaustedCallbackCalled = 0; + cb = psMemExhaustedCallbackSet( TPOutOfMemoryExhaustedCallback ); + + #ifdef COMMENTED_OUT + // Don't include since intentionally aborts + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psAlloc( SIZE_MAX/2 - 1000 ); + } + + psMemExhaustedCallbackSet( cb ); + + ok ( exhaustedCallbackCalled != 0, + "Called psAlloc with HUGE memory requirement and survived!"); + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + psFree( mem[ lcv ] ); + } + #endif +} + + +// Testpoint #451, psRealloc shall increase/decrease memory buffer while preserving contents +void TPrealloc( void ) +{ + diag("TPrealloc"); + + psS32 * mem1; + psS32* mem2; + psS32* mem3; + const psS32 initialSize = 100; + + // allocate buffer with known values. + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + for ( psS32 lcv = 0;lcv < initialSize;lcv++ ) { + mem1[ lcv ] = mem2[ lcv ] = mem3[ lcv ] = lcv; + } + + psMemCheckCorruption(stderr, false); + + // realloc to 2x + mem1 = ( psS32* ) psRealloc( mem1, 2 * initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psRealloc( mem2, 2 * initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psRealloc( mem3, 2 * initialSize * sizeof( psS32 ) ); + + // check values of initial block + int error = 0; + for ( psS32 i = 0;i < initialSize;i++ ) { + if ( mem1[ i ] != i || mem2[ i ] != i || mem3[ i ] != i ) { + error = 1; + break; + } + } + ok(error==0, "Realloc preserve the contents with expanding buffer"); + + psMemCheckCorruption(stderr, false); + + // realloc to 1/2 initial value. + mem1 = ( psS32* ) psRealloc( mem1, ( initialSize / 2 ) * sizeof( psS32 ) ); + mem2 = ( psS32* ) psRealloc( mem2, ( initialSize / 2 ) * sizeof( psS32 ) ); + mem3 = ( psS32* ) psRealloc( mem3, ( initialSize / 2 ) * sizeof( psS32 ) ); + + // check values of initial block + error = 0; + for ( psS32 i = 0;i < initialSize / 2;i++ ) { + if ( mem1[ i ] != i || mem2[ i ] != i || mem3[ i ] != i ) { + error = 1; + break; + } + } + ok(error==0, "Realloc preserved the contents with shrinking buffer"); + + psFree( mem1 ); + psFree( mem2 ); + psFree( mem3 ); +} + + +void TPallocCallback( void ) +{ + diag("TPallocCallback"); + + psS32 * mem1; + psS32* mem2; + psS32* mem3; + psS32 currentId = psMemGetId(); + const psS32 initialSize = 100; + psS32 mark; + + allocCallbackCalled = 0; + freeCallbackCalled = 0; + psMemAllocCallbackSet( memAllocCallback ); + psMemFreeCallbackSet( memFreeCallback ); + + psMemAllocCallbackSetID( currentId + 1 ); + psMemFreeCallbackSetID( currentId + 1 ); + + // allocate buffer with known values. + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + + psFree( mem1 ); + psFree( mem2 ); + psFree( mem3 ); + + ok( allocCallbackCalled == 2 && freeCallbackCalled == 2, + "alloc/free callbacks called the proper number of times" ); + skip_start( allocCallbackCalled != 2 || freeCallbackCalled != 2, + 1, "alloc/free callbacks called the proper number of times" ); + + allocCallbackCalled = 0; + freeCallbackCalled = 0; + + mark = psMemGetId(); + + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + + psMemAllocCallbackSetID( mark ); + + mem1 = ( psS32* ) psRealloc( mem1, initialSize * 2 * sizeof( psS32 ) ); + + psFree( mem1 ); + + ok ( allocCallbackCalled == 2, + "realloc callbacks were called the proper number of times" ); + + skip_end(); +} + + +void TPcheckLeaks( void ) +{ + const psS32 numBuffers = 5; + psS32* buffers[ 5 ]; + psS32 lcv; + psS32 currentId = psMemGetId(); + psMemBlock** blks; + psS32 nLeaks = 0; + psS32 lineMark = 0; + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 1;lcv < numBuffers;lcv++ ) { + psFree( buffers[ lcv ] ); + } + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + ok ( nLeaks == 1, "psMemCheckLeaks found %d leaks", nLeaks ); + skip_start ( nLeaks != 1, 5, "psMemCheckLeaks found %d leaks", nLeaks ); + + ok ( blks[ 0 ] ->lineno == lineMark, + "psMemCheckLeaks found a leak other than the expected one (line %d vs %d)", lineMark, blks[ 0 ] ->lineno ); + skip_start ( blks[ 0 ] ->lineno != lineMark, + 4,"psMemCheckLeaks found a leak other than the expected one (line %d vs %d)", lineMark, blks[ 0 ] ->lineno ); + + psFree( buffers[ 0 ] ); + psFree( blks ); + + psMemCheckLeaks(currentId,NULL,stderr, false); + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 0;lcv < numBuffers - 1;lcv++ ) { + psFree( buffers[ lcv ] ); + } + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + ok ( nLeaks == 1, "psMemCheckLeaks found %d leaks.", nLeaks ); + skip_start ( nLeaks != 1, 3, "psMemCheckLeaks found %d leaks.", nLeaks ); + + ok ( blks[ 0 ] ->lineno == lineMark, "psMemCheckLeaks found leaks"); + skip_start ( blks[ 0 ] ->lineno==lineMark,2,"psMemCheckLeaks found leaks"); + + psFree( buffers[ 4 ] ); + psFree( blks ); + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + if ( lcv % 2 == 0 ) { + psFree( buffers[ lcv ] ); + } + } + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + ok ( nLeaks == 2, "psMemCheckLeaks found %d leaks.", nLeaks); + skip_start ( nLeaks != 2, 1, "psMemCheckLeaks found %d leaks.", nLeaks); + + ok ( blks[ 0 ] ->lineno == lineMark, + "psMemCheckLeaks found a leak other than the expected." ); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + psFree( blks ); + psFree( buffers[ 1 ] ); + psFree( buffers[ 3 ] ); +} + + +#if 0 +void TPmemCorruption( void ) +{ + diag("TPmemCorruption"); + + psS32 * buffer = NULL; + psS32 oldValue = 0; + psS32 corruptions = 0; + psMemProblemCallback cb; + + buffer = psAlloc( sizeof( psS32 ) ); + + // cause memory corruption via buffer underflow + *buffer = 1; + buffer--; + oldValue = *buffer; + *buffer = 2; + + problemCallbackCalled = 0; + cb = psMemProblemCallbackSet( memProblemCallback ); + + corruptions = psMemCheckCorruption( 0 ); + + // restore the memory problem callback + psMemProblemCallbackSet( cb ); + + // restore the value, 'uncorrupting' the buffer + *buffer = oldValue; + buffer++; + + psFree( buffer ); + + ok ( corruptions == 1, + "Expected one memory corruption but found %d", corruptions ); + skip_start ( corruptions != 1, + 1, "Expected one memory corruption but found %d", corruptions ); + + ok ( problemCallbackCalled == 1, "The memProblemCallback was invoked" ); + + skip_end(); +} +#endif + + +void memProblemCallback( psMemBlock *ptr, const char *file, unsigned int lineno ) +{ + problemCallbackCalled++; +} + + +psMemId memAllocCallback( const psMemBlock *ptr ) +{ + allocCallbackCalled++; + return 1; +} + +psMemId memFreeCallback( const psMemBlock *ptr ) +{ + freeCallbackCalled++; + return 1; +} + +psPtr TPOutOfMemoryExhaustedCallback( size_t size ) +{ + exhaustedCallbackCalled++; + return NULL; +} + +void TPmultipleFree( void ) +{ + psPtr buffer = psAlloc( 1024 ); + psPtr buffer2 = buffer; + + psFree( buffer ); + psFree( buffer2 ); +} + +psS32 memCheckTypes( void ) +{ + psArray *negative; + negative = psArrayAlloc(2); + psMetadata *neg; + neg = psMetadataAlloc(); + + psArray *array; + array = psArrayAlloc(100); + int okay = psMemCheckType(PS_DATA_ARRAY,array); + if ( ! okay ) + psFree(array); + ok ( okay, "psMemCheckArray in memCheckType"); + skip_start( ! okay, 28, "psMemCheckArray in memCheckType"); + + ok ( psMemCheckType(PS_DATA_ARRAY, neg), "psMemCheckArray in memCheckType"); + psFree(array); + + psBitSet *bits; + bits = psBitSetAlloc(100); + okay = psMemCheckType(PS_DATA_BITSET, bits); + if ( ! okay ) + psFree(bits); + ok ( okay, "psMemCheckBitSet in memCheckType"); + skip_start ( !okay, 27, "psMemCheckBitSet in memCheckType"); + + ok ( psMemCheckType(PS_DATA_BITSET, negative), + "psMemCheckBitSet in memCheckType"); + psFree(bits); + + psCube *cube; + cube = psCubeAlloc(); + okay = psMemCheckType(PS_DATA_CUBE, cube); + if ( ! okay ) + psFree(cube); + ok ( okay, "psMemCheckCube in memCheckType"); + skip_start ( !okay, 26, "psMemCheckCube in memCheckType"); + psFree(cube); + + psFits *fits; + fits = psFitsOpen("test.fits","w"); + psImage* img = psImageAlloc(16,16,PS_TYPE_F32); + psFitsWriteImage(fits,NULL,img,1,NULL); + psFree(img); + okay = psMemCheckType(PS_DATA_FITS, fits); + if ( ! okay ) + psFree(fits); + ok ( okay, "psMemCheckFits in memCheckType"); + skip_start ( !okay, 25,"psMemCheckFits in memCheckType"); + psFitsClose(fits); + + psHash *hash; + hash = psHashAlloc(100); + okay = psMemCheckType(PS_DATA_HASH, hash); + if ( ! okay ) + psFree(hash); + ok ( okay, "psMemCheckHash in memCheckType"); + skip_start ( !okay, 24, "psMemCheckHash in memCheckType"); + psFree(hash); + + psHistogram *histogram; + histogram = psHistogramAlloc(1.1, 2.2, 2); + okay = psMemCheckType(PS_DATA_HISTOGRAM, histogram); + if ( ! okay ) + psFree(histogram); + ok ( okay, "psMemCheckHistogram in memCheckType"); + skip_start ( !okay, 23, "psMemCheckHistogram in memCheckType"); + psFree(histogram); + + psImage *image; + image = psImageAlloc(5, 5, PS_TYPE_F32); + okay = psMemCheckType(PS_DATA_IMAGE, image); + if ( ! okay ) + psFree(image); + ok ( okay, "psMemCheckImage in memCheckType"); + skip_start ( !okay, 22, "psMemCheckImage in memCheckType"); + psFree(image); + + psKernel *kernel; + kernel = psKernelAlloc(0, 1, 0, 1); + okay = psMemCheckType(PS_DATA_KERNEL, kernel); + if ( ! okay ) + psFree(kernel); + ok ( okay, "psMemCheckKernel in memCheckType"); + skip_start ( !okay, 21, "psMemCheckKernel in memCheckType"); + psFree(kernel); + + psList *list; + list = psListAlloc(NULL); + okay = psMemCheckType(PS_DATA_LIST, list); + if ( ! okay ) + psFree(list); + ok ( okay, "psMemCheckList in memCheckType"); + skip_start ( !okay, 20, "psMemCheckList in memCheckType"); + psFree(list); + + psLookupTable *lookup; + char *file = "tableF32.dat"; + char *format = "\%f \%lf \%d \%ld"; + lookup = psLookupTableAlloc(file, format, 10); + okay = psMemCheckType(PS_DATA_LOOKUPTABLE, lookup); + if ( ! okay ) + psFree(lookup); + ok ( okay, "psMemCheckLookupTable in memCheckType"); + skip_start ( !okay, 19, "psMemCheckLookupTable in memCheckType"); + psFree(lookup); + + psMetadata *metadata; + metadata = psMetadataAlloc(); + okay = psMemCheckType(PS_DATA_METADATA, metadata); + if ( ! okay ) + psFree(metadata); + ok ( okay, "psMemCheckMetadata in memCheckType"); + skip_start ( !okay, 18, "psMemCheckMetadata in memCheckType"); + psFree(metadata); + + psMetadataItem *metaItem; + metaItem = psMetadataItemAlloc("name", PS_DATA_S32, "COMMENT", 1); + okay = psMemCheckType(PS_DATA_METADATAITEM, metaItem); + if ( ! okay ) + psFree(metaItem); + ok ( okay, "psMemCheckMetadataItem in memCheckType"); + skip_start ( !okay, 17, "psMemCheckMetadataItem in memCheckType"); + psFree(metaItem); + + psMinimization *min; + min = psMinimizationAlloc(3, 0.1); + okay = psMemCheckType(PS_DATA_MINIMIZATION, min); + if ( ! okay ) + psFree(min); + ok ( okay, "psMemCheckMinimization in memCheckType"); + skip_start ( !okay, 16, "psMemCheckMinimization in memCheckType"); + psFree(min); + + psPixels *pixels; + pixels = psPixelsAlloc(100); + okay = psMemCheckType(PS_DATA_PIXELS, pixels); + if ( ! okay ) + psFree(pixels); + ok ( okay, "psMemCheckPixels in memCheckType"); + skip_start ( !okay, 15, "psMemCheckPixels in memCheckType"); + psFree(pixels); + + psPlane *plane; + plane = psPlaneAlloc(); + okay = psMemCheckType(PS_DATA_PLANE, plane); + if ( ! okay ) + psFree(plane); + ok ( okay, "psMemCheckPlane in memCheckType."); + skip_start ( !okay, 14, "psMemCheckPlane in memCheckType."); + psFree(plane); + + psPlaneDistort *planeDistort; + planeDistort = psPlaneDistortAlloc(1, 1, 1, 1); + okay = psMemCheckType(PS_DATA_PLANEDISTORT, planeDistort); + if ( ! okay ) + psFree(planeDistort); + ok ( okay, "psMemCheckPlaneDistort in memCheckType."); + skip_start ( !okay, 13, "psMemCheckPlaneDistort in memCheckType."); + psFree(planeDistort); + + psPlaneTransform *planeTransform; + planeTransform = psPlaneTransformAlloc(1, 1); + okay = psMemCheckType(PS_DATA_PLANETRANSFORM, planeTransform); + if ( ! okay ) + psFree(planeTransform); + ok ( okay, "psMemCheckPlaneTransform in memCheckType"); + skip_start ( !okay, 12, "psMemCheckPlaneTransform in memCheckType"); + psFree(planeTransform); + + psPolynomial1D *poly1; + poly1 = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + okay = psMemCheckType(PS_DATA_POLYNOMIAL1D, poly1); + if ( ! okay ) + psFree(poly1); + ok ( okay, "psMemCheckPolynomial1D in memCheckType"); + skip_start ( !okay, 11, "psMemCheckPolynomial1D in memCheckType"); + psFree(poly1); + + psPolynomial2D *poly2; + poly2 = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 1); + okay = psMemCheckType(PS_DATA_POLYNOMIAL2D, poly2); + if ( ! okay ) + psFree(poly2); + ok ( okay, "psMemCheckPolynomial2D in memCheckType"); + skip_start ( !okay, 10, "psMemCheckPolynomial2D in memCheckType"); + psFree(poly2); + + psPolynomial3D *poly3; + poly3 = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 2, 1, 1); + okay = psMemCheckType(PS_DATA_POLYNOMIAL3D, poly3); + if ( ! okay ) + psFree(poly3); + ok ( okay, "psMemCheckPolynomial3D in memCheckType"); + skip_start ( !okay, 9, "psMemCheckPolynomial3D in memCheckType"); + psFree(poly3); + + psPolynomial4D *poly4; + poly4 = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 2, 1, 2, 1); + okay = psMemCheckType(PS_DATA_POLYNOMIAL4D, poly4); + if ( ! okay ) + psFree(poly4); + ok ( okay, "psMemCheckPolynomial4D in memCheckType"); + skip_start ( !okay, 8, "psMemCheckPolynomial4D in memCheckType"); + psFree(poly4); + + psProjection *proj; + proj = psProjectionAlloc(1, 1, 2.1, 2.1, PS_PROJ_TAN); + okay = psMemCheckType(PS_DATA_PROJECTION, proj); + if ( ! okay ) + psFree(proj); + ok ( okay, "psMemCheckProjection in memCheckType."); + skip_start ( !okay, 7, "psMemCheckProjection in memCheckType."); + psFree(proj); + + psScalar *scalar; + psC64 c64 = 1.1 + 7I; + scalar = psScalarAlloc(c64, PS_TYPE_F64); + okay = psMemCheckType(PS_DATA_SCALAR, scalar); + if ( ! okay ) + psFree(scalar); + ok ( okay, "psMemCheckScalar in memCheckType"); + skip_start ( !okay, 6, "psMemCheckScalar in memCheckType"); + psFree(scalar); + + psSphere *sphere; + sphere = psSphereAlloc(); + okay = psMemCheckType(PS_DATA_SPHERE, sphere); + if ( ! okay ) + psFree(sphere); + ok ( okay, "psMemCheckSphere in memCheckType"); + skip_start ( !okay, 5, "psMemCheckSphere in memCheckType"); + psFree(sphere); + + psSphereRot *sphereRot; + sphereRot = psSphereRotAlloc(0, 0, 20); + okay = psMemCheckType(PS_DATA_SPHEREROT, sphereRot); + if ( ! okay ) + psFree(sphereRot); + ok( okay, "psMemCheckSphereRot in memCheckType"); + skip_start( !okay, 4, "psMemCheckSphereRot in memCheckType"); + psFree(sphereRot); + + psSpline1D *spline; + spline = psSpline1DAlloc(2, 1, 0, 2); + okay = psMemCheckType(PS_DATA_SPLINE1D, spline); + if ( ! okay ) + psFree(spline); + ok( okay, "psMemCheckSpline1D in memCheckType"); + skip_start( !okay, 3, "psMemCheckSpline1D in memCheckType"); + psFree(spline); + + psStats *stats; + stats = psStatsAlloc(PS_STAT_MAX); + okay = psMemCheckType(PS_DATA_STATS, stats); + if ( ! okay ) + psFree(stats); + ok( okay, "psMemCheckStats in memCheckType"); + skip_start( !okay, 2, "psMemCheckStats in memCheckType"); + psFree(stats); + + psTime *time; + time = psTimeAlloc(PS_TIME_UT1); + okay = psMemCheckType(PS_DATA_TIME, time); + if ( ! okay ) + psFree(time); + ok( okay, "psMemCheckTime in memCheckType"); + skip_start( !okay, 1, "psMemCheckTime in memCheckType"); + psFree(time); + + psVector *vector; + vector = psVectorAlloc(100, PS_TYPE_F32); + okay = psMemCheckType(PS_DATA_VECTOR, vector); + ok( okay, "psMemCheckVector in memCheckType"); + psFree(vector); + + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + skip_end(); + + psFree(negative); + psFree(neg); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tap_psString.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psString.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psString.c (revision 12167) @@ -0,0 +1,606 @@ +/** @file tst_psString.c + * + * -*- mode: C; c-basic-indent: 4; tab-width: 8; indent-tabs-mode: nil -*- + * vim: set cindent ts=8 sw=4 expandtab: + * + * @brief Test driver for psString functions + * + * This test driver contains the following test points for psStringCopy + * and psStringNCopy, and related string functions. + * 1) Verify string copy - psStringCopy + * 2) Verify empty string copy - psStringCopy + * 3) Verify string copy with length - psStringNCopy + * 4) Verify empty string copy with length - psStringNCopy + * 5) Copy string to larger string - psStringNCopy + * 6) Copy string with negative size - psStringNCopy + * 7) Verifiy creation of string literal - PS_STRING + * + * Return: Number of test points which failed + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 22:34:43 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include "pslib.h" +#include "tap.h" +#include "pstap.h" + + +#define STR_0 "binky had a leeeetle lamb" + +psS32 testStringCopy00(void); +psS32 testStringCopy01(void); +psS32 testStringCopy02(void); +psS32 testStringCopy03(void); +psS32 testStringCopy04(void); +//psS32 testStringCopy05(void); +psS32 testStringCopy06(void); + +psS32 testStrAppend00(void); +psS32 testStrAppend01(void); +psS32 testStrAppend02(void); +psS32 testStrAppend03(void); + +psS32 testStrPrepend00(void); +psS32 testStrPrepend01(void); +psS32 testStrPrepend02(void); +psS32 testStrPrepend03(void); + +psS32 testStrSplit00(void); +psS32 testNULLStrings(void); +psS32 testStrCheck(void); + +static const char* const NullString = " "; + + +psS32 main( psS32 argc, char* argv[] ) +{ + plan_tests(55); + + testStringCopy00(); + testStringCopy01(); + testStringCopy02(); + testStringCopy03(); + testStringCopy04(); + testStringCopy06(); + + testStrAppend00(); + testStrAppend01(); + testStrAppend02(); + testStrAppend03(); + + testStrPrepend00(); + testStrPrepend01(); + testStrPrepend02(); + testStrPrepend03(); + + testStrSplit00(); + testNULLStrings(); + testStrCheck(); +} + + +psS32 testStringCopy00(void) +{ + diag("testStringCopy00"); + + char stringval[20] = "E R R O R"; + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + + // Test point #1 Verify string copy - psStringCopy + strResult = psStringCopy(stringval); + // Perform string compare + result = strcmp(strResult, stringval); + // Modify original string + stringval[0]='G'; + result1 = strcmp(strResult, stringval); + stringval[0]='E'; + ok ( ( result == 0 ) && ( result1 != 0), + "Failed test point #1 strcmp result = %d expected 0\n",result); + + // Free memory allocated + psFree(strResult); + + return 0; +} + + +psS32 testStringCopy01(void) +{ + diag("testStringCopy01"); + + char *emptyval = ""; + psS32 result = 0; + char *strResult; + + // Test point #2 Verify empty string copy - psStringCopy + strResult = psStringCopy(emptyval); + // Perform string compare + result = strcmp(strResult, emptyval); + ok ( result == 0, + "test point #2 strcmp result = %d expected 0\n",result); + + // Free memory allocated + psFree(strResult); + + return 0; +} + + +psS32 testStringCopy02(void) +{ + diag("testStringCopy02"); + + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char stringval1[20] = "e r r o r"; + psS32 substringlen = 5; + char *substringval = "e r r"; + + // Test point #3 Verify string copy with length - psStringNCopy + strResult = psStringNCopy(stringval1, substringlen); + // Perform string compare and get string length + result = strncmp(strResult, substringval, substringlen); + // Change original string + stringval1[0] = 'g'; + result1 = strncmp(strResult, substringval, substringlen); + ok ( ( result == 0 ) && ( result1 == 0 ), + "Failed test point #3 strcmp result = %d expected 0\n",result); + + // Free memory allocated + psFree(strResult); + + return 0; +} + +psS32 testStringCopy03(void) +{ + diag("testStringCopy03"); + + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char *stringvalnocopy = "F A I L"; + + // Test point #4 Verify empty string copy with length - psStringNCopy + strResult = psStringNCopy(stringvalnocopy, 0); + // Perform string compare and get sting length + result = strcmp(strResult, stringvalnocopy); + result1 = strlen(strResult); + ok ( result != 0, + "test point #4 strcmp result = %d didn't expected %d\n",result,0); + + // Free memory + psFree(strResult); + + return 0; +} + +psS32 testStringCopy04(void) +{ + diag("testStringCopy04"); + + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char stringval[20] = "E R R O R"; + psS32 increaseSize = 5; + + // Test point #5 Copy string to larger string - psStringNCopy + strResult = psStringNCopy(stringval, (strlen(stringval) + increaseSize)); + // Perform string compare and get string length + result = strcmp(strResult, stringval); + result1 = strlen(strResult); + // The strings should still compare + ok ( result == 0 && result1 == strlen(stringval), + "test point #5 strcmp result = %d expected %d\n",result,0); + + // Free memory + psFree(strResult); + + return 0; +} + +// XXX This test needs to be modified to check for maximum size +// This will require a mod to psStringNCopy source to check for maximum size +// +//psS32 testStringCopy05(void) +//{ +// char *strResult; +// char stringval[20] = "E R R O R"; +// psS32 negativeSize = -5; +// +// // Test point #6 Copy string with negative size - psStringNCopy +// strResult = psStringNCopy(stringval, negativeSize); +// if ( strResult != NULL ) { +// fprintf(stderr,"Failed test point #6 return value = %p expected NULL\n", +// strResult); +// return 1; +// } +// // Memory should not have been allocated +// +// return 0; +//} + + +psS32 testStringCopy06(void) +{ + diag("testStringCopy06"); + + char *strResult; + char stringval[20] = "E R R O R"; + psS32 result = 0; + + // Test point #7 Verify creation of string literal - PS_STRING + strResult = PS_STRING(E R R O R); + result = strcmp(strResult, stringval); + ok ( result == 0, + "test point #7 strcmp result = %d expected %d",result,0); + + // Memory should not have been allocated + return 0; +} + + +psS32 testStrAppend00(void) +{ + diag("testStrAppend00"); + + char *str=NULL; + int result = 0; + + str = psStringCopy("3.14159"); + + psStringAppend(&str, "%d%s", 2653589, "79323846"); + + // Test point: Verify string append + result = strcmp(str, "3.14159265358979323846"); + ok ( result == 0, "Failed test point\n"); + + psFree(str); + + return 0; +} + +psS32 testStrAppend01(void) +{ + diag("testStrAppend01"); + + ssize_t sz; + char *str=NULL; + + // test nonsensical invocations ... + sz = psStringAppend(NULL, NULL); + ok ( sz == 0, "Failed test point\n"); + + sz = psStringAppend(&str, NULL); + ok ( sz == 0, "Failed test point\n"); + + return 0; +} + + +psS32 testStrAppend02(void) +{ + diag("testStrAppend02"); + + char *str=NULL; + int result; + + // test string creation + psStringAppend(&str, "%s", "fubar"); + result = strcmp(str, "fubar"); + ok ( result == 0, "Failed test point\n"); + + psFree(str); + + return 0; +} + +psS32 testStrAppend03(void) +{ + diag("testStrAppend03"); + + char *str=NULL; + int result; + + str = psStringCopy(STR_0); + + // test null-op + psStringAppend(&str, NullString); + result = strcmp(str, STR_0); + ok ( result == 0, "Failed test point str=[%s]\n", str); + + psFree(str); + + return 0; +} + + +psS32 testStrPrepend00(void) +{ + diag("testStrPrepend00"); + + char *str=NULL; + int result = 0; + + str = psStringCopy("79323846"); + + psStringPrepend(&str, "%s%d","3.14159", 2653589 ); + + // Test point: Verify string append + result = strcmp(str, "3.14159265358979323846"); + ok ( result == 0, "Failed test point\n"); + + psFree(str); + + return 0; +} + + +psS32 testStrPrepend01(void) +{ + diag("testStrPrepend01"); + + ssize_t sz; + char *str=NULL; + + // test nonsensical invocations ... + sz = psStringPrepend(NULL, NULL); + ok ( sz == 0, "Failed test point\n"); + + sz = psStringPrepend(&str, NULL); + ok ( sz == 0, "Failed test point\n"); + + return 0; +} + +psS32 testStrPrepend02(void) +{ + diag("testStrPrepend02"); + + char *str=NULL; + int result; + + // test string creation + psStringPrepend(&str, "%s", "fubar"); + result = strcmp(str, "fubar"); + ok ( result == 0, "Failed test point\n"); + + psFree(str); + + return 0; +} + +psS32 testStrPrepend03(void) +{ + diag("testStrPrepend03"); + + char *str=NULL; + int result; + + str = psStringCopy(STR_0); + + // test null-op + psStringPrepend(&str, NullString); + result = strcmp(str, STR_0); + ok ( result == 0, "test point str=[%s]\n", str); + + psFree(str); + + return 0; +} + + +psS32 testStrSplit00(void) +{ + diag("testStrSplit00"); + + psList *strList = NULL; + char str[35]; + char split[5]; + strncpy(str, "This is, a, test case, to check.", 35); + strncpy(split, ",", 2); + psString psStr; + psString psSplit; + psStr = psStringCopy(str); + psSplit = psStringCopy(split); + + //Return NULL for NULL inputs + strList = psStringSplit(NULL, NULL, true); + ok (!strList, "psStringSplit" ); + psFree(strList); + + strList = NULL; + //Return empty list for NULL string input + strList = psStringSplit(NULL, split, true); + ok ( !psListLength(strList), "psListLength()" ); + psFree(strList); + + strList = NULL; + //Return NULL for NULL splitter input + strList = psStringSplit(str, NULL, true); + ok ( !strList, "psStringSplit" ); + psFree(strList); + + strList = NULL; + //Return a psList* of psStrings + strList = psStringSplit(str, split, true); + ok (strList->n == 4, + "psStringSplit to return the correct number of strings.\n"); + + ok ( !strncmp((psString)(strList->head->data), "This is", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->data), " a", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->data), " test case",10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->next->data), " to check.", 10), + "psStringSplit failed to return expected strings."); + + psFree(strList); + //Return correct psList when using (psString, char*) + strList = psStringSplit(psStr, split, true); + ok (strList->n == 4, + "psStringSplit to return the correct number of strings.\n"); + + ok ( !strncmp((psString)(strList->head->data), "This is", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->data), " a", 10), + "psStringSplit failed to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->data), " test case",10), + "psStringSplit failed to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->next->data), " to check.", 10), + "psStringSplit to return expected strings."); + + psFree(strList); + //Return correct psList when using (char*, psString) + strList = psStringSplit(str, psSplit, true); + ok (strList->n == 4, + "psStringSplit to return the correct number of strings.\n"); + + ok ( !strncmp((psString)(strList->head->data), "This is", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->data), " a", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->data), " test case",10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->next->data), " to check.", 10), + "psStringSplit to return expected strings."); + + psFree(strList); + //Return correct psList when using (psString, psString) + strList = psStringSplit(psStr, psSplit, true); + ok (strList->n == 4, + "psStringSplit to return the correct number of strings.\n"); + + ok ( !strncmp((psString)(strList->head->data), "This is", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->data), " a", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->data), " test case",10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->next->data), " to check.", 10), + "psStringSplit to return expected strings."); + + psFree(strList); + //Return correct psList output for string of zero length case + strncpy(str, "This is,, a,, test case,, to check.", 35); + strList = psStringSplit(str, split, false); + ok (strList->n == 4, + "psStringSplit to return the correct number of strings.\n"); + + ok ( !strncmp((psString)(strList->head->data), "This is", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->data), " a", 10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->data), " test case",10), + "psStringSplit to return expected strings."); + + ok ( !strncmp((psString)(strList->head->next->next->next->data), " to check.", 10), + "psStringSplit to return expected strings."); + + psFree(strList); + psFree(psStr); + psFree(psSplit); + return 0; +} + +psS32 testNULLStrings(void) +{ + diag("testNULLStrings"); + + psString nullTest = NULL; + psString output = NULL; + ssize_t outSize = 0; + char** nullDest = NULL; + char** test = NULL; + //psStringCopy should return NULL for NULL input string + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + output = psStringCopy(nullTest); + ok (output == NULL, + "psStringCopy to return NULL for NULL input string.\n"); + + //psStringNCopy should return NULL for NULL input string + output = psStringNCopy(nullTest, 100); + ok (output == NULL, + "psStringNCopy to return NULL for NULL input string.\n"); + + //psStringAppend should return 0 for NULL input destination + outSize = psStringAppend(nullDest, NullString); + ok (outSize == 0, + "psStringAppend to return 0 for NULL input destination.\n"); + + //psStringAppend should return 0 for NULL input format + outSize = psStringAppend(test, nullTest); + ok (outSize == 0, + "psStringAppend to return 0 for NULL input format.\n"); + + //psStringPrepend should return 0 for NULL input destination + outSize = psStringPrepend(nullDest, " "); + ok (outSize == 0, + "psStringPrepend to return 0 for NULL input destination.\n"); + + //psStringPrepend should return 0 for NULL input format + outSize = psStringPrepend(test, nullTest); + ok (outSize == 0, + "psStringPrepend to return 0 for NULL input format.\n"); + + //psStringSplit should return empty list for NULL input string + psList *nullList = NULL; + nullList = psStringSplit(nullTest, ",", true); + ok ( !psListLength(nullList), + "psStringSplit to return NULL for NULL input string.\n"); + psFree(nullList); + + nullList = NULL; + //psStringSplit should return NULL for NULL input splitter + nullList = psStringSplit("Hello World", nullTest, true); + ok ( !nullList, + "psStringSplit to return NULL for NULL input splitter.\n"); + psFree(nullList); + + return 0; +} + +psS32 testStrCheck(void) +{ + diag("testStrCheck"); + + psString str = NULL; + str = psStringAlloc(10); + strcpy(str, "Hello"); + ok (psMemCheckString(str), "psString allocated!\n"); + + ok (psMemCheckType(PS_DATA_STRING, str), "psString allocated!\n"); + psFree(str); + + char charStr[10]; + ok (!psMemCheckType(PS_DATA_STRING, charStr), + "Input string is a psDataType"); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tap_psStringSubstitute.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psStringSubstitute.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psStringSubstitute.c (revision 12167) @@ -0,0 +1,93 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define ORIGINAL "This is, a, test case, to check." +#define CORRECTED "This is a test case to check." + +int main (void) +{ + plan_tests(16); + + diag("psStringSubstitute() tests"); + + // Return input for NULL key + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, ",", NULL); + ok(input && strcmp(input, ORIGINAL) == 0, "output = %s", input); + psFree(input); + // ok(psMemCheckLeaks(0, NULL, stdout, false) == 0, "Memory Leaks"); + mem(); + } + + // Return input for empty key + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, "XXX", ""); + ok(input && strcmp(input, ORIGINAL) == 0, "output = %s", input); + psFree(input); + // ok(psMemCheckLeaks(0, NULL, stdout, false) == 0, "Memory Leaks"); + mem(); + } + + // Return corrected version for NULL replace + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, NULL, ","); + ok(input && strcmp(input, CORRECTED) == 0, "output = %s", input); + psFree(input); + mem(); + } + + // Return corrected version for empty replace + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, "", ","); + ok(input && strcmp(input, CORRECTED) == 0, "output = %s", input); + psFree(input); + mem(); + } + + // Return NULL for NULL input + { + int status = psStringSubstitute(NULL, "XXX", ","); + ok(status == 0, "status = %d", status); + mem(); + } + + // Return emptry string for empty input + { + psString input = psStringCopy(""); + psStringSubstitute(&input, "XXX", ","); + ok(input && strcmp(input, "") == 0, "output = %s", input); + psFree(input); + mem(); + } + + // Change commas to bangs + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, "!", ","); + ok(input && strcmp(input, "This is! a! test case! to check.") == 0, "output = %s", input); + psFree(input); + mem(); + } + + // Long replacement text --- should allocate new space + { + psString input = psStringCopy(ORIGINAL); + psStringSubstitute(&input, "; This string is too long to fit in input(35 chars)", "."); + ok(input && strcmp(input, "This is, a, test case, to check; " + "This string is too long to fit in input(35 chars)") == 0, + "output = %s", input); + psFree(input); + mem(); + } + + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/sys/tap_psTrace.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tap_psTrace.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tap_psTrace.c (revision 12167) @@ -0,0 +1,365 @@ +/***************************************************************************** + This code will test whether trace levels can be set successfully. + + XXX: For the last two testpoints, must verify that the results are + correct, and put that verification in the test as well. + *****************************************************************************/ +#include +#include +#include + +#include "pslib.h" +#include "tap.h" +#include "pstap.h" + + +static psS32 testTrace00(void); +static psS32 testTrace01(void); +static psS32 testTrace02(void); +static psS32 testTrace03(void); +static psS32 testTrace04(void); +static psS32 testTrace05(void); +static psS32 testTrace05a(void); +static psS32 testTrace06(void); +static psS32 testTrace08(void); + + +psS32 main( psS32 argc, char* argv[] ) +{ + plan_tests(45); + + testTrace00(); + testTrace01(); + testTrace02(); + testTrace03(); + testTrace04(); + testTrace05(); + testTrace05a(); + testTrace06(); + testTrace08(); +} + + +static psS32 testTrace00(void) +{ + diag("testTrace00"); + + psS32 i; + psS32 lev = 0; + + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".", i); + lev = psTraceGetLevel("."); + ok(lev == i, "trace level was %d, actual was %d\n", i, lev); + } + + (void)psTraceSetLevel(".", 3); + + for (i=5;i<10;i++) { + (void)psTraceSetLevel(".NODE00", i); + lev = psTraceGetLevel(".NODE00"); + ok (lev == i,"(.NODE00) expected trace level was %d, actual was %d\n", + i, lev); + + lev = psTraceGetLevel("."); + ok (lev == 3, + "expected trace level was %d, actual was %d\n", i, 3); + } + + + (void)psTraceSetLevel(".NODE00.NODE01", 4); + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".NODE00.NODE01", i); + lev = psTraceGetLevel(".NODE00.NODE01"); + ok (lev == i, + "(.NODE00.NODE01) expected trace level was %d, actual was %d\n", + i, lev); + } + + return 0; +} + + +static psS32 testTrace01(void) +{ + diag("testTrace01"); + + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + (void)psTraceSetLevel(".A.B.C.D.E", 5); + + psTrace(".A.C.D.C",1,"You should not see this.\n"); + psTrace(".A.B.C.D.E",2,"You should see this.\n"); + psTrace(".A.B.C.D.E.F",3,"You should see this too.\n"); + + psTracePrintLevels(); + + return 0; +} + +static psS32 testTrace02(void) +{ + diag("testTrace02"); + + psTraceReset(); + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + psTraceSetLevel(".A.B", 2); + psTraceSetLevel(".A.B.C.D.E", 5); + psTracePrintLevels(); + psTraceSetLevel(".A.B", 10); + psTracePrintLevels(); + + ok (10 == psTraceGetLevel(".A.B.C"), + ".A.B.C did not dynamically inherit a trace level (%d)\n", + psTraceGetLevel(".A.B.C")); + + ok (10 == psTraceGetLevel(".A.B.C.D"), + ".A.B.C.D did not dynamically inherit a trace level (%d)\n", + psTraceGetLevel(".A.B.C.D")); + + ok (5 == psTraceGetLevel(".A.B.C.D.E"), + ".A.B.C.D.E did dynamically inherit a trace level (%d)\n", + psTraceGetLevel(".A.B.C.D.E")); + + return 0; +} + +static psS32 testTrace03(void) +{ + diag("testTrace03"); + + psS32 i = 0; + psS32 lev = 0; + + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".", i); + psTraceReset(); + + lev = psTraceGetLevel("."); + ok (lev == PS_UNKNOWN_TRACE_LEVEL, + "expected trace level was %d, actual was %d\n", + PS_UNKNOWN_TRACE_LEVEL, lev); + } + + (void)psTraceSetLevel(".", 5); + (void)psTraceSetLevel(".a", 4); + (void)psTraceSetLevel(".a.b", 3); + (void)psTraceSetLevel(".a.b.c", 2); + ok (!((5 != psTraceGetLevel(".")) || + (4 != psTraceGetLevel(".a")) || + (3 != psTraceGetLevel(".a.b")) || + (2 != psTraceGetLevel(".a.b.c"))), + "trace successFlag = false;levels were not settable?\n"); + + psTraceReset(); + ok (!((PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a.b")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a.b.c"))), + "trace levels were not reset properly\n"); + + return 0; +} + + +static psS32 testTrace04(void) +{ + diag("testTrace04"); + + int FD; + psS32 nb = 0; + FD = creat("tst_psTrace02_OUT", 0666); + // printf("\nFD = %d\n", FD); + // fp = fopen("tst_psTrace02_OUT", "w"); + for (nb = 0 ; nb<4;nb++) { + if (nb == 0) + // psTraceSetDestination(stdout); + psTraceSetDestination(1); + if (nb == 1) + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + if (nb == 2) + psTraceSetDestination(0); //NULL + if (nb == 3) + psTraceSetDestination(FD); + + (void)psTraceSetLevel(".", 4); + psTrace(".", 5, "(0) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".", 7); + psTrace(".", 5, "(0) This message should be displayed (%x)\n", + 0xbeefface); + + (void)psTraceSetLevel(".a", 4); + psTrace(".a", 5, "(1) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a", 7); + psTrace(".a", 5, "(1) This message should be displayed (%x)\n", + 0xbeefface); + + + (void)psTraceSetLevel(".a.b", 4); + psTrace(".a.b", 5, "(2) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a.b", 7); + psTrace(".a.b", 5, "(2) This message should be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a.b.c", 12); + psTrace(".a.b.c", 11, "(3) This message should be displayed (%x)\n", + 0xbeefface); + + } + + close(FD); + + return(0); +} + +static psS32 testTrace05(void) +{ + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTracePrintLevels(); + + return 0; + +} + +static psS32 testTrace05a(void) +{ + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel("a", 8); + (void)psTraceSetLevel("b", 7); + (void)psTraceSetLevel("c", 5); + + (void)psTraceSetLevel("a.a", 4); + (void)psTraceSetLevel("a.b", 3); + + (void)psTraceSetLevel("b.a", 2); + (void)psTraceSetLevel("b.b", 1); + + (void)psTraceSetLevel("c.a", 0); + (void)psTraceSetLevel("c.b", 3); + (void)psTraceSetLevel("c.c", 5); + + psTracePrintLevels(); + + return 0; + +} + +static psS32 testTrace06(void) +{ + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTraceReset(); + + if ((psTraceGetLevel(".")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.c")!=PS_UNKNOWN_TRACE_LEVEL)) { + return 1; + } + + return 0; +} + +// Ensure that the leading dot in the component names are optional. +static psS32 testTrace08(void) +{ + psTraceReset(); + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTracePrintLevels(); + + if ((psTraceGetLevel(".")!=9) || + (psTraceGetLevel("a")!=8) || + (psTraceGetLevel("b")!=7) || + (psTraceGetLevel("c")!=5) || + (psTraceGetLevel("a.a")!=4) || + (psTraceGetLevel("a.b")!=3) || + (psTraceGetLevel("b.a")!=2) || + (psTraceGetLevel("b.b")!=1) || + (psTraceGetLevel("c.a")!=0) || + (psTraceGetLevel("c.b")!=3) || + (psTraceGetLevel("c.c")!=5)) { + printf("psTraceGetLevel(.) is %d\n", psTraceGetLevel(".")); + printf("psTraceGetLevel(a) is %d\n", psTraceGetLevel("a")); + printf("psTraceGetLevel(b) is %d\n", psTraceGetLevel("b")); + printf("psTraceGetLevel(c) is %d\n", psTraceGetLevel("c")); + printf("psTraceGetLevel(a.a) is %d\n", psTraceGetLevel("a.a")); + printf("psTraceGetLevel(a.b) is %d\n", psTraceGetLevel("a.b")); + printf("psTraceGetLevel(b.a) is %d\n", psTraceGetLevel("b.a")); + printf("psTraceGetLevel(b.b) is %d\n", psTraceGetLevel("b.b")); + printf("psTraceGetLevel(c.a) is %d\n", psTraceGetLevel("c.a")); + printf("psTraceGetLevel(c.b) is %d\n", psTraceGetLevel("c.b")); + printf("psTraceGetLevel(c.c) is %d\n", psTraceGetLevel("c.c")); + + return 1; + } + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psAbort.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psAbort.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psAbort.c (revision 12167) @@ -0,0 +1,76 @@ +/** @file atst_psAbort_01.c + * + * @brief Test driver for psAbort function + * + * This test drivers contains the following test points for psAbort + * 1) Multiple type values in abort message + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:01 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testAbort00(void); +static psS32 testAbort01(void); +static psS32 testAbort02(void); + +testDescription tests[] = { + {testAbort00, 0, "Multiple type values in abort message", -6, false}, + {testAbort01, 1, "String values in abort message", -6, false}, + {testAbort02, 2, "Empty strings in abort message", -6, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psAbort", tests, argc, argv ) ); +} + +static psS32 testAbort00(void) +{ + psS32 intval = 1; + psS64 longval = 2; + float floatval = 3.01; + char charval = 'E'; + char *stringval = "E R R O R"; + + // Test point #1 Multiple type values placed in the error string + psAbort(__func__, + "ALL TYPES intval = %d longval = %lld floatval = %f charval = %c strval = %s", + intval, longval, floatval, charval, stringval ); + + // Program execution should have ended before this statement but if it + // does not return a zero since the expected return value of this test + // is a non-zero value + return 0; +} + +static psS32 testAbort01(void) +{ + // Test point #2 String values in abort message + psAbort(PS_STRING(__LINE__), "NO_VALUES"); + + // Program execution should have ended before this statement but if it + // does not return a zero since the expected return value of this test + // is a non-zero value + return 0; +} + +static psS32 testAbort02(void) +{ + // Test point #2 String values in abort message + psAbort("",""); + + // Program execution should have ended before this statement but if it + // does not return a zero since the expected return value of this test + // is a non-zero value + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psConfigure.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psConfigure.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psConfigure.c (revision 12167) @@ -0,0 +1,52 @@ +/** @file tst_psConfigure.c + * + * @brief Test driver for psconfigure functions + * + * This test driver contains the following test points for psConfigure + * functions. + * 1) Return current psLib version + * + * Return: Number of test points which failed + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-07-13 02:47:01 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + + +static psS32 psLibVersion00(void); + + +testDescription tests[] = { + {psLibVersion00, 0, "Return current psLib version", 0, false}, + {NULL} + }; + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + return(!runTestSuite( stderr, "psConfigure", tests, argc, argv)); +} + + +static psS32 psLibVersion00(void) +{ + char *stringVal = NULL; + + stringVal = psLibVersion(); + psLogMsg(__func__,PS_LOG_INFO,"Current psLib version is: %s", stringVal); + psFree(stringVal); + + + return 0; +} + Index: /branches/rel-1-1/psLib/test/sys/tst_psError.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psError.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psError.c (revision 12167) @@ -0,0 +1,394 @@ +/** @file tst_psError.c + * + * @brief Test driver for psError function + * + * This test driver contains the following test points for psError + * testError00 - psError() (Testpoint #486) + * testError01 - psErrorMsg(), psErrorStackPrint() (Testpoint #725) + * testError02 - psErrorStackPrintV() (Testpoint #726) + * testError03 - psErrorGet(), psErrorLast() (Testpoint #727) + * testError04 - psErrorClear() (Testpoint #728) + * testError05 - psErrorCodeString() (Testpoint #729) + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-27 23:56:12 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include +#include +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testError00(void); +static psS32 testError01(void); +static psS32 testError02(void); +static psS32 testError03(void); +static psS32 testError04(void); +static psS32 testError05(void); +static psS32 testErrorRegister(void); + +// Function used in testError02 to verify the psErrorStackPrintV function +static void myErrorStackPrint(FILE *fd, + const char *fmt, + ...) +{ + va_list ap; + + // Test whether psErrorStackPrintV() accept a va_list for output variables + va_start(ap, fmt); + psErrorStackPrintV(fd, fmt, ap); + va_end(ap); +} + +testDescription tests[] = { + {testError00, 486, "psError()", 0, false}, + {testError01, 725, "psErrorMsg(),psErrorStackPrint()", 0, false}, + {testError02, 726, "psErrorStackPrintV()", 0, false}, + {testError03, 727, "psErrorGet(),psErrorLast()", 0, false}, + {testError04, 728, "psErrorClear()", 0, false}, + {testError05, 729, "psErrorCodeString()", 0, false}, + {testErrorRegister, 751, "psErrorRegister()", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + +// return ( !runTestSuite(stderr, "psError", tests, argc, argv) ); + testError03(); +} + +static psS32 testError05(void) +{ + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + + // Verify the return value of psErrorCodeString + psLogMsg("tst_psError05", PS_LOG_INFO, psErrorCodeString(code)); + + // Verify the return value of psErrorCodeString if code is negative + if( psErrorCodeString(-1) != NULL) { + psLogMsg("tst_psError05", PS_LOG_INFO, "Failed error string with neg. code"); + return 40; + } + + return 0; +} + +static psS32 testError04(void) +{ + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + psErr *last = NULL; + psErr *lastAfterClear = NULL; + + // With an attemp error stack call psErrorClear + psErrorClear(); + + // Get the last error message and verify PS_ERR_NONE (empty stack) + lastAfterClear = psErrorLast(); + if(lastAfterClear->code != PS_ERR_NONE) { + psLogMsg("tst_psError05", PS_LOG_ERROR, "psErrorLast did not return expected."); + return 30; + } + psFree(lastAfterClear); + + // Generate three error messages to have messages on error stack + if (psError(code, true, "Error code = %d", code) != code) { + psLogMsg("tst_psError04", PS_LOG_ERROR, "Failed return value verify."); + return 31; + } + if (psError((code+1), false, "Error code = %d", (code+1)) != (code+1)) { + psLogMsg("tst_psError04", PS_LOG_ERROR, "Failed return value verify."); + return 32; + } + if (psError((code+2), false, "Error code = %d", (code+2)) != (code+2)) { + psLogMsg("tst_psError04", PS_LOG_ERROR, "Failed return value verify."); + return 33; + } + + // Get the last error message and verify it has the expected code + last = psErrorLast(); + if(last->code != (code+2)) { + psLogMsg("tst_psError04", PS_LOG_ERROR, "psErrorLast did not return expected."); + return 34; + } + psFree(last); + + // Clear the error stack + psErrorClear(); + + // Get the last error message after clear and verify is has PS_ERR_NONE code + lastAfterClear = psErrorLast(); + if(lastAfterClear->code != PS_ERR_NONE) { + psLogMsg("tst_psError05", PS_LOG_ERROR, "psErrorLast did not return expected."); + return 35; + } + psFree(lastAfterClear); + + return 0; +} + +static psS32 testError03(void) +{ + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + psErr *last = NULL; + psErr *getErr = NULL; + + // Attempt to get last error message with an empty stack verify psErr with code PS_ERR_NONE + last = psErrorLast(); + if(last->code != PS_ERR_NONE) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorLast did return PS_ERR_NONE for empty stack"); + return 20; + } + psFree(last); + + // Attempt to get specific error message with empty stack verify psErr with code PS_ERR_NONE + getErr= psErrorGet(2); + if(getErr->code != PS_ERR_NONE) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorGet did not return PS_ERR_NONE for empty stack"); + return 21; + } + psFree(getErr); + + // Attempt to get error message with invalid index and an empty stack + getErr= psErrorGet(-1); + if(getErr->code != PS_ERR_NONE) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorGet with invalid index/empty stack"); + return 22; + } + psFree(getErr); + + // Generate three error messages + if (psError(code, true, "Error code = %d", code) != code) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "Failed return value verify."); + return 23; + } + if (psError((code+1), false, "Error code = %d", (code+1)) != (code+1)) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "Failed return value verify."); + return 24; + } + if (psError((code+2), false, "Error code = %d", (code+2)) != (code+2)) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "Failed return value verify."); + return 25; + } + + last = psErrorLast(); + getErr= psErrorGet(0); + + // Check that last and get with 0 index are equal + if(last != getErr) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorGet(0) not equal to psErrorLast"); + return 26; + } + psFree(last); + + // Verify the last error message was returned + if ( getErr->code != (code+2) ) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorLast() did not retrieve last error"); + return 27; + } + psFree(getErr); + + // Verify the middle error message can be retrieved + getErr= psErrorGet(1); + if ( getErr->code != (code+1)) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorGet() did not retrieve proper error"); + return 28; + } + psFree(getErr); + + // Verify the psErrorGet returns NULL if an invalid index is given + getErr= psErrorGet(-1); + if ( getErr->code != PS_ERR_NONE ) { + psLogMsg("tst_psError03", PS_LOG_ERROR, "psErrorGet() did not return PS_ERR_NONE w/ invalid arg"); + return 29; + } + psFree(getErr); + + return 0; +} + +static psS32 testError02(void) +{ + psErrorCode code = PS_ERR_BAD_PARAMETER_VALUE; + + // Generate error message and verify return value + if (psError(code, true, "Error code = %d", code) != code ) { + psLogMsg("tst_psError02", PS_LOG_ERROR, "Failed return value verify."); + return 10; + } + myErrorStackPrint(stderr,"ERROR STACK PRINT Test%dA",2); + + return 0; +} + +static psS32 testError01(void) +{ + psErrorCode code=PS_ERR_BAD_PARAMETER_VALUE; + + // Verify the return value of psErrorMsg is the psErrorCode passed + if ( psError(code, true, "Error code = %d", code) != code) { + psLogMsg("tst_psError01", PS_LOG_ERROR, "Failed return value verify."); + return 1; + } + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1A"); + + // test1B empty string in for name argument + if ( psError(code+1, true, "Error code = %d", code+1) != code+1) { + psLogMsg("tst_psError01", PS_LOG_ERROR, "Failed return with empty string."); + return 2; + } + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1B"); + + // test1D undefined code + if ( psError(-1, true, "Error code = %d", -1) != -1) { + psLogMsg("test_psError01", PS_LOG_ERROR, "Failed return with undefined code."); + return 4; + } + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1D"); + + // test1E set psErrorMsg argument to false + if( psError(code, false, "Error code = %d", code) != code) { + psLogMsg("test_psError01", PS_LOG_ERROR, "Failed return with false new arg."); + return 5; + } + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1E"); + + // test1F psErrorMsg with a error code less then PS_ERR_BASE(256) + if( psError(9, true, "Errno code = %d", 9) != 9) { + psLogMsg("test_psError01", PS_LOG_ERROR, "Failed return with errno code."); + return 6; + } + psErrorStackPrint(stderr,"ERROR STACK PRINT Test1F"); + + return 0; +} + +static psS32 testError00(void) +{ + + psS32 intval=1; + psS64 longval = 2; + float floatval = 3.01; + char charval = 'E'; + char *stringval = "E R R O R"; + + // Test point #1 Multiple type values placed in the error string + psError(PS_ERR_UNKNOWN, true, + "ALL TYPES intval = %d longval = %lld floatval = %f charval = %c strval = %s", + intval,longval,floatval,charval,stringval); + + // Test point #2 String values in error message + psError(PS_ERR_UNKNOWN, true, "NO VALUES"); + + // Test point #3 Empty strings in error message + psError(PS_ERR_UNKNOWN, true, ""); + + return 0; +} + +static psS32 testErrorRegister(void) +{ + + psS32 numErr = 4; + psErrorDescription errDesc[] = { {PS_ERR_N_ERR_CLASSES+1,"first"}, + {PS_ERR_N_ERR_CLASSES+2,"second"}, + {PS_ERR_N_ERR_CLASSES+3,"third"}, + {PS_ERR_N_ERR_CLASSES+4,"fourth"} }; + /* + 1. invoke psErrorRegister with a n>1 array of psErrorDescriptions. Verify that: + a. Each error description given is retrievable with psErrorCodeString. + */ + psErrorRegister(errDesc,numErr); + + for (psS32 i = 0; i < numErr; i++) { + const char* desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES+1+i); + if (desc == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't find registered error code."); + return 1+i*10; + } + if (strcmp(desc,errDesc[i].description) != 0) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", + desc,errDesc[i].description); + return 2+i*10; + } + } + + /* + 2. invoke psErrorCodeString with a static/builtin psLib error code. Verify: + a. the result is correct. + */ + const char* desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES); + if (desc == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't find static error code."); + return 40; + } + if (strcmp(desc,"error classes end marker") != 0) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", + desc,"error classes end marker"); + return 41; + } + + desc = psErrorCodeString(PS_ERR_NONE); + if (desc == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't find static error code."); + return 42; + } + if (strcmp(desc,"not an error") != 0) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't return the proper description. Got '%s', expected '%s'.", + desc,"not an error"); + return 43; + } + + /* + 3. invoke psErrorCodeString with an invalid code. Verify a NULL is returned. + */ + desc = psErrorCodeString(PS_ERR_N_ERR_CLASSES+numErr+1); + if (desc != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't return a NULL with a bogus input code."); + return 44; + } + + /* + 4. invoke psErrorRegister with a NULL psErrorDescription. Verify that: + a. the execution does not cease. + b. an appropriate error is generated. + */ + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + psErrorClear(); + psErrorRegister(NULL,1); + psErr* err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode didn't generate proper error code for NULL input."); + return 45; + } + psFree(err); + + /* + 5. invoke psErrorRegister with nerror=0. Verify that no error occurs. + */ + psErrorClear(); + psErrorRegister(errDesc,0); + err = psErrorLast(); + if (err->code != PS_ERR_NONE) { + psLogMsg(__func__,PS_LOG_ERROR, + "psErrorCode generated an error for nErrors = 0."); + return 46; + } + psFree(err); + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psLine.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psLine.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psLine.c (revision 12167) @@ -0,0 +1,142 @@ +/** @file tst_psLine.c + * + * @brief Test driver for psLine functions + * + * @author dRob, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-07-14 02:26:25 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testLineAlloc(void); +static psS32 testLineInit(void); +static psS32 testLineAdd(void); +static psS32 testLineChk(void); + +testDescription tests[] = { + {testLineAlloc, 0, "Verify Line Alloc/Free", 0, false}, + {testLineInit, 1, "Verify Line Init", 0, false}, + {testLineAdd, 2, "Verify Line Add", 0, false}, + {testLineChk, 3, "Verify Line MemCheck", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psLine", tests, argc, argv ) ); +} + +psS32 testLineAlloc(void) +{ + psLine *lineline = NULL; + lineline = psLineAlloc(20); + + if (lineline->NLINE != 20) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLine set NLINE parameter incorrectly during Allocation!\n"); + return 2; + } + if (lineline->Nline != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLine set Nline parameter incorrectly during Allocation!\n"); + return 2; + } + strncpy(lineline->line, "Hello World", 20); + if (strncmp(lineline->line, "Hello World", 20)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLine was unable to store a simple string!\n"); + return 3; + } + + psFree(lineline); + + return 0; +} + +psS32 testLineInit(void) +{ + psLine *line = NULL; + //Return false for NULL input + if (psLineInit(line) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineInit failed. Expected false for NULL psLine input.\n"); + return 1; + } + //Allocate a line and return true on Init + line = psLineAlloc(1); + if(!psLineInit(line) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineInit failed. Expected true for valid psLine input.\n"); + return 2; + } + if (line->NLINE != 1 || line->Nline != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineInit failed to return the correct line parameters.\n"); + return 3; + } + + psFree(line); + + return 0; +} + +psS32 testLineAdd(void) +{ + psLine *line = NULL; + //Return false for NULL input + if (psLineAdd(line, "Hello World") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineAdd failed. Expected false for NULL psLine input.\n"); + return 1; + } + //Allocate and return true for valid input. + line = psLineAlloc(20); + if (!psLineAdd(line, "Hello %s", "World") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineAdd failed. Expected true for valid psLine input.\n"); + return 2; + } + if (line->NLINE != 20 || line->Nline != 11) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineAdd failed to return the correct line parameters.\n"); + return 3; + } + if (strncmp(line->line, "Hello World", 20)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psLineAdd failed to store the correct line string.\n"); + printf("\n %s\n", line->line); + return 4; + } + + psFree(line); + + return 0; +} + +psS32 testLineChk(void) +{ + psLine *line = NULL; + //Return false for Null input line + if (psMemCheckLine(line)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMemCheckLine failed to return false for NULL line input.\n"); + return 1; + } + line = psLineAlloc(1); + if (!psMemCheckLine(line)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMemCheckLine failed to return true for valid line input.\n"); + return 2; + } + psFree(line); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psLogMsg.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psLogMsg.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psLogMsg.c (revision 12167) @@ -0,0 +1,308 @@ +/***************************************************************************** + This code will test whether trace levels can be set successfully. + This code will test whether trace messages can be displayed with printf + style string. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include +#include + +static psS32 testLogMsg00(); +static psS32 testLogMsg01(); +static psS32 testLogMsg02(); +static psS32 testLogMsg03(); +static psS32 testLogMsg04(); +static psS32 testLogMsg05(); +static psS32 testLogMsg06(); + +testDescription tests[] = { + { + testLogMsg00, 0, "default log levels, printf-style strings", 0, false + }, + { + testLogMsg01, 1, "default log levels, psVLogMsg()", 0, false + }, + { + testLogMsg02, 2, "psLogSet/GetLevel()", 0, false + }, + { + testLogMsg03, 3, "psLogSetFormat()", 0, false + }, + { + testLogMsg04, 4, "Output Format", 0, false + }, + { + testLogMsg05, 5, "psLogSet/GetDestination()", 0, false + }, + { + testLogMsg06, 6, "psMessageDestination()", 0, false + }, + { + NULL + } + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psLogMsg", tests, argc, argv ) ); +} + + +static void myLogMsg(const char *name, + psS32 level, + const char *fmt, + ...) +{ + va_list ap; + + // Test whether psLogMsgV() accept a va_list for output variables. + va_start(ap, fmt); + psLogMsgV(name, level, fmt, ap); + va_end(ap); +} + +static psS32 testLogMsg00() +{ + psS32 i = 0; + + // Send a log messages for levels 0:9. Only the first four messages + // should actually be displayed. + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d %f %s\n", i, + (float) i, "beep beep"); + } + + return 0; +} + +static psS32 testLogMsg01() +{ + psS32 i = 0; + + // Send a log messages for levels 0:9. Only the first four messages + // should actually be displayed. + for (i=0;i<10;i++) { + myLogMsg(__func__, i, "Hello World! My level is %d %f %s\n", i, + (float) i, "beep beep"); + } + + return 0; +} + +static psS32 testLogMsg02() +{ + + psLogSetLevel(9); + // Send a log messages for levels 0:9. + for (psS32 i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + psLogSetLevel(5); + psLogMsg(__func__, 6, "This should not be displayed (level %d)\n", 6); + psLogSetLevel(4); + psLogMsg(__func__, 4, "This should be displayed (level %d)\n", 4); + psLogMsg(__func__, 4, "This should display level 4 logging -> level %d\n", psLogGetLevel() ); + + return 0; +} + +static psS32 testLogMsg03() +{ + psS32 i; + + fprintf(stderr,"------------- psLogSetFormat() -------------\n"); + psLogSetFormat(""); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(NULL) -------------\n"); + psLogSetFormat(NULL); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(T) -------------\n"); + psLogSetFormat("T"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(H) -------------\n"); + psLogSetFormat("H"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(L) -------------\n"); + psLogSetFormat("L"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(N) -------------\n"); + psLogSetFormat("N"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(M) -------------\n"); + psLogSetFormat("M"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + fprintf(stderr,"------------- psLogSetFormat(THLNM) -------------\n"); + psLogSetFormat("THLNM"); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + return 0; +} + + +psS32 testLogMsg04() +{ + psLogMsg("Under 15 chars", 0, "Hello World!\n"); + psLogMsg("This string is more than 15 chars", 0, "Hello World!\n"); + psLogMsg(__func__, 0, "Line #1\n"); + psLogMsg(__func__, 0, "Line #2\n"); + psLogMsg(__func__, 0, "Line #3"); + psLogMsg(__func__, 0, "Line #4"); + + return 0; +} + +psS32 testLogMsg05() +{ + psS32 i = 0; + // FILE* file; + int fd; + // char line[256]; + + printf("--------------- psLogSetDestination(PS_LOG_NONE) ----------------\n"); + // psLogSetDestination("none"); + psLogSetDestination(0); + printf(" File Descriptor = %d \n", psLogGetDestination() ); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + printf("------------- psLogSetDestination(PS_LOG_TO_STDERR) -------------\n"); + // psLogSetDestination("dest:stderr"); + psLogSetDestination(2); + printf(" File Descriptor = %d \n", psLogGetDestination() ); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + printf("------------- psLogSetDestination(PS_LOG_TO_STDOUT) -------------\n"); + // psLogSetDestination("dest:stdout"); + psLogSetDestination(1); + printf(" File Descriptor = %d \n", psLogGetDestination() ); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + printf("--------------- psLogSetDestination(""file:log.txt"") ---------------\n"); + fd = creat("log.txt", 0666); + // psLogSetDestination("file:log.txt"); + psLogSetDestination(fd); + printf(" File Descriptor = %d \n", psLogGetDestination() ); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + + // psLogSetDestination("none"); + FILE *file; + char line[257]; + // psLogSetDestination(-1); + psLogSetDestination(0); + printf("--------------------- The Contents of log.txt -------------------\n"); + file = fopen("log.txt","r"); + while ( fgets(line,256,file) != NULL ) { + printf("%s",line); + } + fclose(file); + close(fd); + + int fd2 = creat("eva/log.txt", 0666); + printf("--------------- psLogSetDestination(""file:eva/log.txt"") ----------\n"); + // psLogSetDestination("file:/eva/log.txt"); + psLogSetDestination(fd2); + for ( i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + close(fd2); + + return 0; +} + +psS32 testLogMsg06() +{ + psS32 i = 0; + // FILE* file; + int fd; + // char line[256]; + + printf("--------------- psMessageDestination(PS_LOG_NONE) ----------------\n"); + psMessageDestination("none"); + // psLogSetDestination(0); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + printf("------------- psMessageDestination(PS_LOG_TO_STDERR) -------------\n"); + psMessageDestination("stderr"); + // psLogSetDestination(2); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d - stderr\n", i); + } + + printf("------------- psMessageDestination(PS_LOG_TO_STDOUT) -------------\n"); + psMessageDestination("stdout"); + // psLogSetDestination(1); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d - stdout\n", i); + } + + printf("--------------- psMessageDestination(""file:log2.txt"") ---------------\n"); + fd = creat("log2.txt", 0666); + psMessageDestination("file:log2.txt"); + // psLogSetDestination(fd); + for (i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + + + psMessageDestination("none"); + FILE *file; + char line[257]; + // psMessageDestination(-1); + // psLogSetDestination(0); + printf("--------------------- The Contents of log2.txt -------------------\n"); + file = fopen("log2.txt","r"); + while ( fgets(line,256,file) != NULL ) { + printf("%s",line); + } + fclose(file); + close(fd); + + int fd2 = creat("eva/log2.txt", 0666); + printf("--------------- psMessageDestination(""file:eva/log.txt"") ----------\n"); + psMessageDestination("file:eva/log2.txt"); + // psLogSetDestination(fd2); + for ( i=0;i<10;i++) { + psLogMsg(__func__, i, "Hello World! My level is %d\n", i); + } + close(fd2); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psMemory.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psMemory.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psMemory.c (revision 12167) @@ -0,0 +1,827 @@ +/** @file tst_psMemory.c +* +* @brief Contains the tests for psMemory.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-04-04 19:52:55 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include +#include +#include +#include +#include +#include + + +#include "psTest.h" +#include "pslib.h" // need to allow malloc for callback use + +static psS32 TPFreeReferencedMemory( void ); +static psS32 TPOutOfMemory( void ); +static psS32 TPReallocOutOfMemory( void ); +static psPtr TPOutOfMemoryExhaustedCallback( size_t size ); +static psS32 TPCheckBufferPositive( void ); +static psS32 TPrealloc( void ); +static psS32 TPallocCallback( void ); +static psMemId memAllocCallback( const psMemBlock *ptr ); +static psMemId memFreeCallback( const psMemBlock *ptr ); +static psS32 TPcheckLeaks( void ); +static psS32 TPmemCorruption( void ); +static psS32 TPmultipleFree( void ); +static psS32 memCheckTypes( void ); +void memProblemCallback( psMemBlock *ptr, const char *filename, unsigned int lineno ); + +static psS32 problemCallbackCalled = 0; +static psS32 allocCallbackCalled = 0; +static psS32 freeCallbackCalled = 0; +static psS32 exhaustedCallbackCalled = 0; + +testDescription tests[] = { + {TPCheckBufferPositive, 449, "checkBufferPositive", 0, false}, + {TPOutOfMemory, 450, "outOfMemory", -6, false}, + {TPReallocOutOfMemory, 562, "reallocOutOfMemory", -6, false}, + {TPrealloc, 451, "psRealloc", 0, false}, + {TPallocCallback, 452, "allocCallback", 0, false}, + {TPallocCallback, 453, "allocCallback2", 0, true}, + {TPcheckLeaks, 454, "checkLeaks", 0, false}, + {TPmemCorruption, 455, "psMemCorruption", 0, false}, + {TPFreeReferencedMemory, 456, "freeReferencedMemory", 0, false}, + {TPmultipleFree, 699, "multipleFree", -6, false}, + {memCheckTypes, 700, "psMemCheckType", 0, false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psMemory", tests, argc, argv ) ); +} + +// Testpoint #449, psAlloc shall allocate memory blocks writeable by caller. +psS32 TPCheckBufferPositive( void ) +{ + psS32 * mem; + const psS32 size = 100; + psS32 failed = 0; + + psLogMsg( __func__, PS_LOG_INFO, "psAlloc shall allocate memory blocks writeable by caller.\n" ); + + mem = ( psS32* ) psAlloc( size * sizeof( psS32 ) ); + if ( mem == NULL ) { + psError(PS_ERR_UNKNOWN, true, "psAlloc returned a NULL value in %s!", __func__ ); + return 1; + } + + for ( psS32 index = 0;index < size;index++ ) { + mem[ index ] = index; + } + + for ( psS32 index = 0;index < size;index++ ) { + if ( mem[ index ] != index ) { + failed++; + } + } + + psFree( mem ); + + return failed; +} + +psS32 TPFreeReferencedMemory( void ) +{ + // create memory + psS32 * mem; + psS32 ref = 0; + + psLogMsg( __func__, PS_LOG_INFO, "memory reference count shall be incrementable/decrementable" ); + + mem = ( psS32* ) psAlloc( 100 * sizeof( psS32 ) ); + + ref = psMemGetRefCounter( mem ); + if ( ref != 1 ) { + psError(PS_ERR_UNKNOWN, true, "Expected to buffer reference count to be initially 1, but it was %d.", ref ); + return 1; + } + + psMemIncrRefCounter( mem ); + psMemIncrRefCounter( mem ); + psMemIncrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + if ( ref != 4 ) { + psError(PS_ERR_UNKNOWN, true, "Expected to find buffer reference count to be 4, but it was %d.", ref ); + return 1; + } + + psMemDecrRefCounter( mem ); + psMemDecrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + if ( ref != 2 ) { + psError(PS_ERR_UNKNOWN, true, "Expected to find buffer reference count to be 2, but it was %d.", ref ); + return 1; + } + + psLogMsg( __func__, PS_LOG_INFO, "psFree shall be just decrement a multiple refererenced pointer." ); + + psMemDecrRefCounter( mem ); + + ref = psMemGetRefCounter( mem ); + if ( ref != 1 ) { + psError(PS_ERR_UNKNOWN, true, "Expected to find buffer reference count to be 1, but it was %d.", ref ); + return 1; + } + + psFree( mem ); + + return 0; +} + +// Bug/Task #562 regression test. Upon requesting more memory than is available, psRealloc shall call +// the psMemExhaustedCallback. +psS32 TPReallocOutOfMemory( void ) +{ + psS32 * mem[ 100 ]; + psMemExhaustedCallback cb; + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = NULL; + } + + psLogMsg( __func__, PS_LOG_INFO, "Upon requesting more memory than is available, psRealloc shall call " + "the psMemExhaustedCallback.\n" ); + + exhaustedCallbackCalled = 0; + + cb = psMemExhaustedCallbackSet( TPOutOfMemoryExhaustedCallback ); + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psAlloc( 10 ); + } + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psRealloc( mem[ lcv ], SIZE_MAX/2 - 1000 ); + } + + psMemExhaustedCallbackSet( cb ); + + if ( exhaustedCallbackCalled == 0 ) { + psError(PS_ERR_UNKNOWN,true, "Called psRealloc with HUGE memory requirement and survived in %s!", __func__ ); + return 1; + } + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + psFree( mem[ lcv ] ); + } + + return 0; +} +// Testpoint #450, Upon requesting more memory than is available, psalloc shall call +// the psMemExhaustedCallback. +psS32 TPOutOfMemory( void ) +{ + psS32 * mem[ 100 ]; + psMemExhaustedCallback cb; + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = NULL; + } + + psLogMsg( __func__, PS_LOG_INFO, "Upon requesting more memory than is available, psalloc shall call " + "the psMemExhaustedCallback.\n" ); + + exhaustedCallbackCalled = 0; + + cb = psMemExhaustedCallbackSet( TPOutOfMemoryExhaustedCallback ); + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + mem[ lcv ] = ( psS32* ) psAlloc( SIZE_MAX/2 - 1000 ); + } + + psMemExhaustedCallbackSet( cb ); + + if ( exhaustedCallbackCalled == 0 ) { + psError(PS_ERR_UNKNOWN,true, "Called psAlloc with HUGE memory requirement and survived in %s!", __func__ ); + return 1; + } + + for ( psS32 lcv = 0; lcv < 100; lcv++ ) { + psFree( mem[ lcv ] ); + } + + return 0; +} + +// Testpoint #451, psRealloc shall increase/decrease memory buffer while preserving contents +psS32 TPrealloc( void ) +{ + psS32 * mem1; + psS32* mem2; + psS32* mem3; + const psS32 initialSize = 100; + + psLogMsg( __func__, PS_LOG_INFO, "psRealloc shall increase/decrease memory buffer while " + "preserving contents" ); + + // allocate buffer with known values. + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + for ( psS32 lcv = 0;lcv < initialSize;lcv++ ) { + mem1[ lcv ] = mem2[ lcv ] = mem3[ lcv ] = lcv; + } + + psMemCheckCorruption( 1 ); + psLogMsg( __func__, PS_LOG_INFO, "Expanding memory buffer." ); + + // realloc to 2x + mem1 = ( psS32* ) psRealloc( mem1, 2 * initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psRealloc( mem2, 2 * initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psRealloc( mem3, 2 * initialSize * sizeof( psS32 ) ); + + // check values of initial block + for ( psS32 i = 0;i < initialSize;i++ ) { + if ( mem1[ i ] != i || mem2[ i ] != i || mem3[ i ] != i ) { + psError(PS_ERR_UNKNOWN,true, "Realloc didn't preserve the contents with expanding buffer in %s.", + __func__ ); + break; + } + } + + psMemCheckCorruption( 1 ); + psLogMsg( __func__, PS_LOG_INFO, "Shrinking memory buffer." ); + + // realloc to 1/2 initial value. + mem1 = ( psS32* ) psRealloc( mem1, ( initialSize / 2 ) * sizeof( psS32 ) ); + mem2 = ( psS32* ) psRealloc( mem2, ( initialSize / 2 ) * sizeof( psS32 ) ); + mem3 = ( psS32* ) psRealloc( mem3, ( initialSize / 2 ) * sizeof( psS32 ) ); + + // check values of initial block + for ( psS32 i = 0;i < initialSize / 2;i++ ) { + if ( mem1[ i ] != i || mem2[ i ] != i || mem3[ i ] != i ) { + psError(PS_ERR_UNKNOWN,true, "Realloc didn't preserve the contents with shrinking buffer in %s.", + __func__ ); + break; + } + } + + psFree( mem1 ); + psFree( mem2 ); + psFree( mem3 ); + + return 0; +} + +psS32 TPallocCallback( void ) +{ + psS32 * mem1; + psS32* mem2; + psS32* mem3; + psS32 currentId = psMemGetId(); + const psS32 initialSize = 100; + psS32 mark; + + allocCallbackCalled = 0; + freeCallbackCalled = 0; + psMemAllocCallbackSet( memAllocCallback ); + psMemFreeCallbackSet( memFreeCallback ); + + psMemAllocCallbackSetID( currentId + 1 ); + psMemFreeCallbackSetID( currentId + 1 ); + + psLogMsg( __func__, PS_LOG_INFO, "call to psAlloc/psRealloc shall generate a callback if specified " + "memory ID is allocated." ); + + // allocate buffer with known values. + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem2 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + mem3 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + + psFree( mem1 ); + psFree( mem2 ); + psFree( mem3 ); + + if ( allocCallbackCalled != 2 || freeCallbackCalled != 2 ) { + psError(PS_ERR_UNKNOWN,true, "alloc/free callbacks were not called the proper number of times in %s", + __func__ ); + return 1; + } + + allocCallbackCalled = 0; + freeCallbackCalled = 0; + + mark = psMemGetId(); + + mem1 = ( psS32* ) psAlloc( initialSize * sizeof( psS32 ) ); + + psMemAllocCallbackSetID( mark ); + + mem1 = ( psS32* ) psRealloc( mem1, initialSize * 2 * sizeof( psS32 ) ); + + psFree( mem1 ); + + if ( allocCallbackCalled != 2 ) { + psError(PS_ERR_UNKNOWN,true, "realloc callbacks were not called the proper number of times in %s", + __func__ ); + return 1; + } + + return 0; + +} + +psS32 TPcheckLeaks( void ) +{ + const psS32 numBuffers = 5; + psS32* buffers[ 5 ]; + psS32 lcv; + psS32 currentId = psMemGetId(); + psMemBlock** blks; + psS32 nLeaks = 0; + psS32 lineMark = 0; + + psLogMsg( __func__, PS_LOG_INFO, "psMemCheckLeaks shall return the number of blocks above an ID " + "that are still allocated" ); + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 1;lcv < numBuffers;lcv++ ) { + psFree( buffers[ lcv ] ); + } + + psLogMsg( __func__, PS_LOG_INFO, "following psMemCheckLeaks call should produce one instance." ); + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + if ( nLeaks != 1 ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks should have found 1 leak, but found %d in %s.", nLeaks, __func__ ); + return 1; + } + + if ( blks[ 0 ] ->lineno != lineMark ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks found a leak other than the expected one (line %d vs %d) in %s.", + lineMark, blks[ 0 ] ->lineno, __func__ ); + return 1; + } + + psFree( buffers[ 0 ] ); + psFree( blks ); + + psLogMsg( __func__, PS_LOG_INFO, "Testing psMemCheckLeaks again with a different leak location" ); + psMemCheckLeaks(currentId,NULL,stderr, false); + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 0;lcv < numBuffers - 1;lcv++ ) { + psFree( buffers[ lcv ] ); + } + + psLogMsg( __func__, PS_LOG_INFO, "following psMemCheckLeaks call should produce one error." ); + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + if ( nLeaks != 1 ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks should have found 1 leak, but found %d in %s.", nLeaks, __func__ ); + return 1; + } + + if ( blks[ 0 ] ->lineno != lineMark ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks found a leak other than the expected one in %s.", __func__ ); + return 1; + } + + psFree( buffers[ 4 ] ); + psFree( blks ); + + psLogMsg( __func__, PS_LOG_INFO, "Testing psMemCheckLeaks again with multiple leak locations." ); + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + lineMark = __LINE__ + 1; + buffers[ lcv ] = psAlloc( sizeof( psS32 ) ); + } + + for ( lcv = 0;lcv < numBuffers;lcv++ ) { + if ( lcv % 2 == 0 ) { + psFree( buffers[ lcv ] ); + } + } + + psLogMsg( __func__, PS_LOG_INFO, "following psMemCheckLeaks call should produce two errors." ); + + nLeaks = psMemCheckLeaks( currentId, &blks, stderr, false ); + + if ( nLeaks != 2 ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks should have found 1 leak, but found %d in %s.", nLeaks, __func__ ); + return 1; + } + + if ( blks[ 0 ] ->lineno != lineMark ) { + psError(PS_ERR_UNKNOWN,true, "psMemCheckLeaks found a leak other than the expected one in %s.", __func__ ); + return 1; + } + + psFree( blks ); + psFree( buffers[ 1 ] ); + psFree( buffers[ 3 ] ); + + return 0; +} + +psS32 TPmemCorruption( void ) +{ + psS32 * buffer = NULL; + psS32 oldValue = 0; + psS32 corruptions = 0; + psMemProblemCallback cb; + + psLogMsg( __func__, PS_LOG_INFO, "psMemCheckCorruption shall detect memory corruptions" ); + + buffer = psAlloc( sizeof( psS32 ) ); + + // cause memory corruption via buffer underflow + *buffer = 1; + buffer--; + oldValue = *buffer; + *buffer = 2; + + problemCallbackCalled = 0; + cb = psMemProblemCallbackSet( memProblemCallback ); + + psLogMsg( __func__, PS_LOG_INFO, "psMemCheckCorruption should output an error message and " + "memProblemCallback callback should be called." ); + + corruptions = psMemCheckCorruption( 0 ); + + // restore the memory problem callback + psMemProblemCallbackSet( cb ); + + // restore the value, 'uncorrupting' the buffer + *buffer = oldValue; + buffer++; + + psFree( buffer ); + + if ( corruptions != 1 ) { + psError(PS_ERR_UNKNOWN,true, "Expected one memory corruption but found %d in %s.", + corruptions, __func__ ); + return 1; + } + + if ( problemCallbackCalled != 1 ) { + psError(PS_ERR_UNKNOWN,true, "The memProblemCallback was not invoked but should have been in %s", + __func__ ); + return 1; + } + + return 0; + +} + +void memProblemCallback( psMemBlock *ptr, const char *file, unsigned int lineno ) +{ + psLogMsg( __func__, PS_LOG_INFO, "memory callback called for id %lu (%s:%d).", + ptr->id, file, lineno ); + problemCallbackCalled++; + return ; +} + +psMemId memAllocCallback( const psMemBlock *ptr ) +{ + psLogMsg( __func__, PS_LOG_INFO, "block %lu was (re)allocated", ptr->id ); + allocCallbackCalled++; + return 1; +} + +psMemId memFreeCallback( const psMemBlock *ptr ) +{ + psLogMsg( __func__, PS_LOG_INFO, "block %lu was freed", ptr->id ); + freeCallbackCalled++; + return 1; +} + +psPtr TPOutOfMemoryExhaustedCallback( size_t size ) +{ + psLogMsg( __func__, PS_LOG_INFO, "Custom MemExhaustedCallback was invoked." ); + exhaustedCallbackCalled++; + return NULL; +} + +psS32 TPmultipleFree( void ) +{ + + psPtr buffer = psAlloc( 1024 ); + psPtr buffer2 = buffer; + + psFree( buffer ); + + psLogMsg( __func__, PS_LOG_INFO, "Next should abort due to multiple freeing." ); + psFree( buffer2 ); + + psError(PS_ERR_UNKNOWN,true, + "Multiple psFree call survived"); + + return 0; +} + +static psS32 memCheckTypes( void ) +{ + psArray *negative; + negative = psArrayAlloc(2); + psMetadata *neg; + neg = psMetadataAlloc(); + + psArray *array; + array = psArrayAlloc(100); + if ( !psMemCheckType(PS_DATA_ARRAY, array) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckArray failed in memCheckType. \n"); + psFree(array); + return 1; + } + psLogMsg( __func__, PS_LOG_INFO, "Next should error from invalid datatype." ); + if ( !psMemCheckType(PS_DATA_ARRAY, neg) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckArray failed in memCheckType. \n"); + } + psFree(array); + + psBitSet *bits; + bits = psBitSetAlloc(100); + if ( !psMemCheckType(PS_DATA_BITSET, bits) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckBitSet failed in memCheckType. \n"); + psFree(bits); + return 1; + } + psLogMsg( __func__, PS_LOG_INFO, "Next should error from invalid datatype." ); + if ( !psMemCheckType(PS_DATA_BITSET, negative) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckBitSet failed in memCheckType. \n"); + } + psFree(bits); + + psCube *cube; + cube = psCubeAlloc(); + if ( !psMemCheckType(PS_DATA_CUBE, cube) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckCube failed in memCheckType. \n"); + psFree(cube); + return 1; + } + psFree(cube); + + psFits *fits; + fits = psFitsOpen("test.fits","w"); + psImage* img = psImageAlloc(16,16,PS_TYPE_F32); + psFitsWriteImage(fits,NULL,img,1,NULL); + psFree(img); + if ( !psMemCheckType(PS_DATA_FITS, fits) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckFits failed in memCheckType. \n"); + psFree(fits); + return 1; + } + psFitsClose(fits); + + psHash *hash; + hash = psHashAlloc(100); + if ( !psMemCheckType(PS_DATA_HASH, hash) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckHash failed in memCheckType. \n"); + psFree(hash); + return 1; + } + psFree(hash); + + psHistogram *histogram; + histogram = psHistogramAlloc(1.1, 2.2, 2); + if ( !psMemCheckType(PS_DATA_HISTOGRAM, histogram) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckHistogram failed in memCheckType. \n"); + psFree(histogram); + return 1; + } + psFree(histogram); + + psImage *image; + image = psImageAlloc(5, 5, PS_TYPE_F32); + if ( !psMemCheckType(PS_DATA_IMAGE, image) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckImage failed in memCheckType. \n"); + psFree(image); + return 1; + } + psFree(image); + + psKernel *kernel; + kernel = psKernelAlloc(0, 1, 0, 1); + if ( !psMemCheckType(PS_DATA_KERNEL, kernel) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckKernel failed in memCheckType. \n"); + psFree(kernel); + return 1; + } + psFree(kernel); + + psList *list; + list = psListAlloc(NULL); + if ( !psMemCheckType(PS_DATA_LIST, list) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckList failed in memCheckType. \n"); + psFree(list); + return 1; + } + psFree(list); + + psLookupTable *lookup; + char *file = "tableF32.dat"; + char *format = "\%f \%lf \%d \%ld"; + lookup = psLookupTableAlloc(file, format, 10); + if ( !psMemCheckType(PS_DATA_LOOKUPTABLE, lookup) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckLookupTable failed in memCheckType. \n"); + psFree(lookup); + return 1; + } + psFree(lookup); + + psMetadata *metadata; + metadata = psMetadataAlloc(); + if ( !psMemCheckType(PS_DATA_METADATA, metadata) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckMetadata failed in memCheckType. \n"); + psFree(metadata); + return 1; + } + psFree(metadata); + + psMetadataItem *metaItem; + metaItem = psMetadataItemAlloc("name", PS_DATA_S32, "COMMENT", 1); + if ( !psMemCheckType(PS_DATA_METADATAITEM, metaItem) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckMetadataItem failed in memCheckType. \n"); + psFree(metaItem); + return 1; + } + psFree(metaItem); + + psMinimization *min; + min = psMinimizationAlloc(3, 0.1); + if ( !psMemCheckType(PS_DATA_MINIMIZATION, min) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckMinimization failed in memCheckType. \n"); + psFree(min); + return 1; + } + psFree(min); + + psPixels *pixels; + pixels = psPixelsAlloc(100); + if ( !psMemCheckType(PS_DATA_PIXELS, pixels) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPixels failed in memCheckType. \n"); + psFree(pixels); + return 1; + } + psFree(pixels); + + psPlane *plane; + plane = psPlaneAlloc(); + if ( !psMemCheckType(PS_DATA_PLANE, plane) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPlane failed in memCheckType. \n"); + psFree(plane); + return 1; + } + psFree(plane); + + psPlaneDistort *planeDistort; + planeDistort = psPlaneDistortAlloc(1, 1, 1, 1); + if ( !psMemCheckType(PS_DATA_PLANEDISTORT, planeDistort) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPlaneDistort failed in memCheckType. \n"); + psFree(planeDistort); + return 1; + } + psFree(planeDistort); + + psPlaneTransform *planeTransform; + planeTransform = psPlaneTransformAlloc(1, 1); + if ( !psMemCheckType(PS_DATA_PLANETRANSFORM, planeTransform) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPlaneTransform failed in memCheckType. \n"); + psFree(planeTransform); + return 1; + } + psFree(planeTransform); + + psPolynomial1D *poly1; + poly1 = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + if ( !psMemCheckType(PS_DATA_POLYNOMIAL1D, poly1) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPolynomial1D failed in memCheckType. \n"); + psFree(poly1); + return 1; + } + psFree(poly1); + + psPolynomial2D *poly2; + poly2 = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 2, 1); + if ( !psMemCheckType(PS_DATA_POLYNOMIAL2D, poly2) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPolynomial2D failed in memCheckType. \n"); + psFree(poly2); + return 1; + } + psFree(poly2); + + psPolynomial3D *poly3; + poly3 = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 2, 1, 1); + if ( !psMemCheckType(PS_DATA_POLYNOMIAL3D, poly3) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPolynomial3D failed in memCheckType. \n"); + psFree(poly3); + return 1; + } + psFree(poly3); + + psPolynomial4D *poly4; + poly4 = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 2, 1, 2, 1); + if ( !psMemCheckType(PS_DATA_POLYNOMIAL4D, poly4) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckPolynomial4D failed in memCheckType. \n"); + psFree(poly4); + return 1; + } + psFree(poly4); + + psProjection *proj; + proj = psProjectionAlloc(1, 1, 2.1, 2.1, PS_PROJ_TAN); + if ( !psMemCheckType(PS_DATA_PROJECTION, proj) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckProjection failed in memCheckType. \n"); + psFree(proj); + return 1; + } + psFree(proj); + + psScalar *scalar; + psC64 c64 = 1.1 + 7I; + scalar = psScalarAlloc(c64, PS_TYPE_F64); + if ( !psMemCheckType(PS_DATA_SCALAR, scalar) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckScalar failed in memCheckType. \n"); + psFree(scalar); + return 1; + } + psFree(scalar); + + psSphere *sphere; + sphere = psSphereAlloc(); + if ( !psMemCheckType(PS_DATA_SPHERE, sphere) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckSphere failed in memCheckType. \n"); + psFree(sphere); + return 1; + } + psFree(sphere); + + psSphereRot *sphereRot; + sphereRot = psSphereRotAlloc(0, 0, 20); + if ( !psMemCheckType(PS_DATA_SPHEREROT, sphereRot) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckSphereRot failed in memCheckType. \n"); + psFree(sphereRot); + return 1; + } + psFree(sphereRot); + + psSpline1D *spline; + spline = psSpline1DAlloc(2, 1, 0, 2); + if ( !psMemCheckType(PS_DATA_SPLINE1D, spline) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckSpline1D failed in memCheckType. \n"); + psFree(spline); + return 1; + } + psFree(spline); + + psStats *stats; + stats = psStatsAlloc(PS_STAT_MAX); + if ( !psMemCheckType(PS_DATA_STATS, stats) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckStats failed in memCheckType. \n"); + psFree(stats); + return 1; + } + psFree(stats); + + psTime *time; + time = psTimeAlloc(PS_TIME_UT1); + if ( !psMemCheckType(PS_DATA_TIME, time) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckTime failed in memCheckType. \n"); + psFree(time); + return 1; + } + psFree(time); + + psVector *vector; + vector = psVectorAlloc(100, PS_TYPE_F32); + if ( !psMemCheckType(PS_DATA_VECTOR, vector) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psMemCheckVector failed in memCheckType. \n"); + psFree(vector); + return 1; + } + psFree(vector); + + + psFree(negative); + psFree(neg); + + return 0; +} Index: /branches/rel-1-1/psLib/test/sys/tst_psString.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psString.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psString.c (revision 12167) @@ -0,0 +1,740 @@ +/** @file tst_psString.c + * + * -*- mode: C; c-basic-indent: 4; tab-width: 8; indent-tabs-mode: nil -*- + * vim: set cindent ts=8 sw=4 expandtab: + * + * @brief Test driver for psString functions + * + * This test driver contains the following test points for psStringCopy + * and psStringNCopy, and related string functions. + * 1) Verify string copy - psStringCopy + * 2) Verify empty string copy - psStringCopy + * 3) Verify string copy with length - psStringNCopy + * 4) Verify empty string copy with length - psStringNCopy + * 5) Copy string to larger string - psStringNCopy + * 6) Copy string with negative size - psStringNCopy + * 7) Verifiy creation of string literal - PS_STRING + * + * Return: Number of test points which failed + * + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-07-14 02:26:25 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +#define STR_0 "binky had a leeeetle lamb" + +static psS32 testStringCopy00(void); +static psS32 testStringCopy01(void); +static psS32 testStringCopy02(void); +static psS32 testStringCopy03(void); +static psS32 testStringCopy04(void); +//static psS32 testStringCopy05(void); +static psS32 testStringCopy06(void); + +static psS32 testStrAppend00(void); +static psS32 testStrAppend01(void); +static psS32 testStrAppend02(void); +static psS32 testStrAppend03(void); + +static psS32 testStrPrepend00(void); +static psS32 testStrPrepend01(void); +static psS32 testStrPrepend02(void); +static psS32 testStrPrepend03(void); + +static psS32 testStrSplit00(void); +static psS32 testNULLStrings(void); +static psS32 testStrCheck(void); + +testDescription tests[] = { + {testStringCopy00, 0, "Verify string copy", 0, false}, + {testStringCopy01, 1, "Verify empty string copy", 0, false}, + {testStringCopy02, 2, "Verify string copy with length", 0, false}, + {testStringCopy03, 3, "Verify empty string copy with length", 0, false}, + {testStringCopy04, 4, "Copy string to larger string", 0, false}, + // {testStringCopy05, 5, "Copy string with negative size", 0, false}, + {testStringCopy06, 6, "Verify creation of string literal", 0, false}, + + {testStrAppend00, 7, "Verify generic string append", 0, false}, + {testStrAppend01, 8, "Test append NULL handling", 0, false}, + {testStrAppend02, 9, "Verify append string creation", 0, false}, + {testStrAppend03, 10, "Test append null-op", 0, false}, + + {testStrPrepend00,11, "Verify generic string prepend", 0, false}, + {testStrPrepend01,12, "Test prepend NULL handling", 0, false}, + {testStrPrepend02,13, "Verify prepend string creation", 0, false}, + {testStrPrepend03,14, "Test prepend null-op", 0, false}, + {testStrSplit00,15, "Test String Splitting", 0, false}, + {testNULLStrings,666, "Test NULL String Error Handling", 0, false}, + {testStrCheck,16, "Test String Allocation and MemCheck", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psString", tests, argc, argv ) ); +} + +/* +psS32 main( psS32 argc, + char * argv[] ) +{ + psBool tpResult = false; + char stringval[20] = "E R R O R"; + char stringval1[20] = "e r r o r"; + char *stringvalnocopy = "F A I L"; + char *substringval = "e r r"; + psS32 substringlen = 6; + char *emptyval = ""; + psS32 tpFails = 0; + char *strResult; + psS32 increaseSize = 5; + psS32 negativeSize = -5; + psS32 result = 0; + psS32 result1 = 0; + psS32 memBlockAllocated = 0; + psMemBlock ***memBlockPtr = NULL; + +*/ + +static psS32 testStringCopy00(void) +{ + char stringval[20] = "E R R O R"; + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + + // Test point #1 Verify string copy - psStringCopy + strResult = psStringCopy(stringval); + // Perform string compare + result = strcmp(strResult, stringval); + // Modify original string + stringval[0]='G'; + result1 = strcmp(strResult, stringval); + stringval[0]='E'; + if ( ( result != 0 ) || ( result1 == 0) ) { + fprintf(stderr, "Failed test point #1 strcmp result = %d expected 0\n",result); + fprintf(stderr, " src = %s expected %s\n", + strResult, stringval); + fprintf(stderr, " changed strcmp result = %d expected 1\n",result1); + fprintf(stderr, " changed src = %s expected %s\n",strResult, + stringval); + return 1; + } + + // Free memory allocated + psFree(strResult); + + return 0; +} + +static psS32 testStringCopy01(void) +{ + char *emptyval = ""; + psS32 result = 0; + char *strResult; + + // Test point #2 Verify empty string copy - psStringCopy + strResult = psStringCopy(emptyval); + // Perform string compare + result = strcmp(strResult, emptyval); + if ( result != 0 ) { + fprintf(stderr,"Failed test point #2 strcmp result = %d expected 0\n",result); + fprintf(stderr," src = %s expected %s\n", + strResult, emptyval); + return 1; + } + + // Free memory allocated + psFree(strResult); + + return 0; +} + +static psS32 testStringCopy02(void) +{ + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char stringval1[20] = "e r r o r"; + psS32 substringlen = 5; + char *substringval = "e r r"; + + // Test point #3 Verify string copy with length - psStringNCopy + strResult = psStringNCopy(stringval1, substringlen); + // Perform string compare and get string length + result = strncmp(strResult, substringval, substringlen); + // Change original string + stringval1[0] = 'g'; + result1 = strncmp(strResult, substringval, substringlen); + if ( ( result != 0 ) || ( result1 != 0 ) ) { + fprintf(stderr,"Failed test point #3 strcmp result = %d expected 0\n",result); + fprintf(stderr," src = %s expected %s\n", + strResult, substringval); + fprintf(stderr," changed strcmp result = %d expected 0\n",result1); + fprintf(stderr," src = %s expected %s\n", + strResult, substringval); + return 1; + } + // Free memory allocated + psFree(strResult); + + return 0; +} + +static psS32 testStringCopy03(void) +{ + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char *stringvalnocopy = "F A I L"; + + // Test point #4 Verify empty string copy with length - psStringNCopy + strResult = psStringNCopy(stringvalnocopy, 0); + // Perform string compare and get sting length + result = strcmp(strResult, stringvalnocopy); + result1 = strlen(strResult); + if ( result == 0 ) { + fprintf(stderr,"Failed test point #4 strcmp result = %d didn't expected %d\n",result,0); + fprintf(stderr," src = %s didn't expected %s\n", + strResult, stringvalnocopy); + return 1; + } + // Free memory + psFree(strResult); + + return 0; +} + +static psS32 testStringCopy04(void) +{ + psS32 result = 0; + psS32 result1 = 0; + char *strResult; + char stringval[20] = "E R R O R"; + psS32 increaseSize = 5; + + // Test point #5 Copy string to larger string - psStringNCopy + strResult = psStringNCopy(stringval, (strlen(stringval) + increaseSize)); + // Perform string compare and get string length + result = strcmp(strResult, stringval); + result1 = strlen(strResult); + // The strings should still compare + if ( ( result != 0 ) || + ( result1 != strlen(stringval) ) ) { + fprintf(stderr,"Failed test point #5 strcmp result = %d expected %d\n",result,0); + fprintf(stderr," src = %s expected %s\n", + strResult, stringval); + fprintf(stderr," strlne result = %d expected %d\n",result1, + (psS32)strlen(stringval)); + return 1; + } + // Free memory + psFree(strResult); + + return 0; +} + +// XXX This test needs to be modified to check for maximum size +// This will require a mod to psStringNCopy source to check for maximum size +// +//static psS32 testStringCopy05(void) +//{ +// char *strResult; +// char stringval[20] = "E R R O R"; +// psS32 negativeSize = -5; +// +// // Test point #6 Copy string with negative size - psStringNCopy +// strResult = psStringNCopy(stringval, negativeSize); +// if ( strResult != NULL ) { +// fprintf(stderr,"Failed test point #6 return value = %p expected NULL\n", +// strResult); +// return 1; +// } +// // Memory should not have been allocated +// +// return 0; +//} + +static psS32 testStringCopy06(void) +{ + char *strResult; + char stringval[20] = "E R R O R"; + psS32 result = 0; + + // Test point #7 Verify creation of string literal - PS_STRING + strResult = PS_STRING(E R R O R); + result = strcmp(strResult, stringval); + if ( result != 0 ) { + fprintf(stderr,"Failed test point #7 strcmp result = %d expected %d",result,0); + return 1; + } + // Memory should not have been allocated + + return 0; +} + +static psS32 testStrAppend00(void) +{ + char *str=NULL; + int result = 0; + + str = psStringCopy("3.14159"); + + psStringAppend(&str, "%d%s", 2653589, "79323846"); + + // Test point: Verify string append + result = strcmp(str, "3.14159265358979323846"); + if ( result != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrAppend01(void) +{ + ssize_t sz; + char *str=NULL; + + // test nonsensical invocations ... + sz = psStringAppend(NULL, NULL); + if ( sz != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + sz = psStringAppend(&str, NULL); + if ( sz != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + return 0; +} + +static psS32 testStrAppend02(void) +{ + char *str=NULL; + int result; + + // test string creation + psStringAppend(&str, "%s", "fubar"); + result = strcmp(str, "fubar"); + if ( result != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrAppend03(void) +{ + char *str=NULL; + int result; + + str = psStringCopy(STR_0); + + // test null-op + psStringAppend(&str, ""); + result = strcmp(str, STR_0); + if ( result != 0 ) { + fprintf(stderr,"Failed test point str=[%s]\n", str); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrPrepend00(void) +{ + char *str=NULL; + int result = 0; + + str = psStringCopy("79323846"); + + psStringPrepend(&str, "%s%d","3.14159", 2653589 ); + + // Test point: Verify string append + result = strcmp(str, "3.14159265358979323846"); + if ( result != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrPrepend01(void) +{ + ssize_t sz; + char *str=NULL; + + // test nonsensical invocations ... + sz = psStringPrepend(NULL, NULL); + if ( sz != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + sz = psStringPrepend(&str, NULL); + if ( sz != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + return 0; +} + +static psS32 testStrPrepend02(void) +{ + char *str=NULL; + int result; + + // test string creation + psStringPrepend(&str, "%s", "fubar"); + result = strcmp(str, "fubar"); + if ( result != 0 ) { + fprintf(stderr,"%s","Failed test point\n"); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrPrepend03(void) +{ + char *str=NULL; + int result; + + str = psStringCopy(STR_0); + + // test null-op + psStringPrepend(&str, ""); + result = strcmp(str, STR_0); + if ( result != 0 ) { + fprintf(stderr,"Failed test point str=[%s]\n", str); + return 1; + } + + psFree(str); + + return 0; +} + +static psS32 testStrSplit00(void) +{ + psList *strList = NULL; + char str[35]; + char split[5]; + strncpy(str, "This is, a, test case, to check.", 35); + strncpy(split, ",", 2); + psString psStr; + psString psSplit; + psStr = psStringCopy(str); + psSplit = psStringCopy(split); + + //Return NULL for NULL inputs + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + strList = psStringSplit(NULL, NULL, true); + // if (strList != NULL) { + if (strList) { + psFree(strList); + return 1; + } + psFree(strList); + strList = NULL; + //Return empty list for NULL string input + //psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + strList = psStringSplit(NULL, split, true); + // if (strList != NULL) { + if ( psListLength(strList) ) { + psFree(strList); + return 2; + } + psFree(strList); + strList = NULL; + //Return NULL for NULL splitter input + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + strList = psStringSplit(str, NULL, true); + // if (strList != NULL) { + if ( strList ) { + psFree(strList); + return 3; + } + psFree(strList); + strList = NULL; + //Return a psList* of psStrings + strList = psStringSplit(str, split, true); + if (strList->n != 4) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return the correct number of strings.\n"); + return 4; + } + if ( strncmp((psString)(strList->head->data), "This is", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 5; + } + if ( strncmp((psString)(strList->head->next->data), " a", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 6; + } + if ( strncmp((psString)(strList->head->next->next->data), " test case", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 7; + } + if ( strncmp((psString)(strList->head->next->next->next->data), " to check.", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 8; + } + psFree(strList); + //Return correct psList when using (psString, char*) + strList = psStringSplit(psStr, split, true); + if (strList->n != 4) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return the correct number of strings.\n"); + return 9; + } + if ( strncmp((psString)(strList->head->data), "This is", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 10; + } + if ( strncmp((psString)(strList->head->next->data), " a", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 11; + } + if ( strncmp((psString)(strList->head->next->next->data), " test case", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 12; + } + if ( strncmp((psString)(strList->head->next->next->next->data), " to check.", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 13; + } + psFree(strList); + //Return correct psList when using (char*, psString) + strList = psStringSplit(str, psSplit, true); + if (strList->n != 4) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return the correct number of strings.\n"); + return 14; + } + if ( strncmp((psString)(strList->head->data), "This is", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 15; + } + if ( strncmp((psString)(strList->head->next->data), " a", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 16; + } + if ( strncmp((psString)(strList->head->next->next->data), " test case", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 17; + } + if ( strncmp((psString)(strList->head->next->next->next->data), " to check.", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 18; + } + psFree(strList); + //Return correct psList when using (psString, psString) + strList = psStringSplit(psStr, psSplit, true); + if (strList->n != 4) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return the correct number of strings.\n"); + return 19; + } + if ( strncmp((psString)(strList->head->data), "This is", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 20; + } + if ( strncmp((psString)(strList->head->next->data), " a", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 21; + } + if ( strncmp((psString)(strList->head->next->next->data), " test case", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 22; + } + if ( strncmp((psString)(strList->head->next->next->next->data), " to check.", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 23; + } + psFree(strList); + //Return correct psList output for string of zero length case + strncpy(str, "This is,, a,, test case,, to check.", 35); + strList = psStringSplit(str, split, false); + if (strList->n != 4) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return the correct number of strings.\n"); + return 24; + } + if ( strncmp((psString)(strList->head->data), "This is", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 25; + } + if ( strncmp((psString)(strList->head->next->data), " a", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 26; + } + if ( strncmp((psString)(strList->head->next->next->data), " test case", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 27; + } + if ( strncmp((psString)(strList->head->next->next->next->data), " to check.", 10) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psStringSplit failed to return expected strings."); + return 28; + } + + psFree(strList); + psFree(psStr); + psFree(psSplit); + return 0; +} + +static psS32 testNULLStrings(void) +{ + psString nullTest = NULL; + psString output = NULL; + ssize_t outSize = 0; + char** nullDest = NULL; + char** test; + //psStringCopy should return NULL for NULL input string + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + output = psStringCopy(nullTest); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringCopy failed to return NULL for NULL input string.\n"); + return 1; + } + //psStringNCopy should return NULL for NULL input string + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + output = psStringNCopy(nullTest, 100); + if (output != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringNCopy failed to return NULL for NULL input string.\n"); + return 2; + } + + //psStringAppend should return 0 for NULL input destination + outSize = psStringAppend(nullDest, ""); + if (outSize != 0) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringAppend failed to return 0 for NULL input destination.\n"); + return 3; + } + //psStringAppend should return 0 for NULL input format + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + outSize = psStringAppend(test, nullTest); + if (outSize != 0) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringAppend failed to return 0 for NULL input format.\n"); + return 4; + } + //psStringPrepend should return 0 for NULL input destination + outSize = psStringPrepend(nullDest, " "); + if (outSize != 0) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringPrepend failed to return 0 for NULL input destination.\n"); + return 3; + } + //psStringPrepend should return 0 for NULL input format + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + outSize = psStringPrepend(test, nullTest); + if (outSize != 0) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringPrepend failed to return 0 for NULL input format.\n"); + return 4; + } + //psStringSplit should return empty list for NULL input string + psList *nullList = NULL; + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + nullList = psStringSplit(nullTest, ",", true); + // if (nullList != NULL) { + if ( psListLength(nullList) ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringSplit failed to return NULL for NULL input string.\n"); + return 5; + } + psFree(nullList); + nullList = NULL; + //psStringSplit should return NULL for NULL input splitter + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + nullList = psStringSplit("Hello World", nullTest, true); + // if (nullList != NULL) { + if ( nullList ) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psStringSplit failed to return NULL for NULL input splitter.\n"); + return 6; + } + psFree(nullList); + + return 0; +} + +psS32 testStrCheck(void) +{ + psString str = NULL; + str = psStringAlloc(10); + strcpy(str, "Hello"); + if (!psMemCheckString(str)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psString wasn't properly allocated!\n"); + return 1; + } + if (!psMemCheckType(PS_DATA_STRING, str)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psString wasn't properly allocated!\n"); + return 2; + } + psFree(str); + + char charStr[10]; + if (psMemCheckType(PS_DATA_STRING, charStr)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Input string is not a psDataType!!! (Should have returned false)\n"); + return 3; + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/sys/tst_psTrace.c =================================================================== --- /branches/rel-1-1/psLib/test/sys/tst_psTrace.c (revision 12167) +++ /branches/rel-1-1/psLib/test/sys/tst_psTrace.c (revision 12167) @@ -0,0 +1,381 @@ +/***************************************************************************** + This code will test whether trace levels can be set successfully. + + XXX: For the last two testpoints, must verify that the results are + correct, and put that verification in the test as well. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include +#include + + +static psS32 testTrace00(void); +static psS32 testTrace01(void); +static psS32 testTrace02(void); +static psS32 testTrace03(void); +static psS32 testTrace04(void); +static psS32 testTrace05(void); +static psS32 testTrace05a(void); +static psS32 testTrace06(void); +static psS32 testTrace08(void); + +testDescription tests[] = { + {testTrace00, 0, "psTraceSetLevel() and psTraceGetLevel()", 0, false}, + {testTrace01, 1, "psTraceSetLevel(): set multiple components in one call", 0, false}, + {testTrace02, 2, "psTraceSetLevel(): test static/dynamic inheritance", 0, false}, + {testTrace03, 3, "psTraceReset()", 0, false}, + {testTrace04, 4, "psTrace()", 0, false}, + {testTrace05, 5, "psTracePrintLevels()", 0, false}, + {testTrace05a, 5, "optional leading dot and psTracePrintLevels()", 0, false}, + {testTrace06, 6, "Testing psTraceReset", 0, false}, + {testTrace08, 8, "Testing ", 0, false}, + {NULL} + }; + +testDescription tests2[] = { + {testTrace08, 8, "Testing ", 0, false}, + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psTrace", tests, argc, argv ) ); +} + +static psS32 testTrace00(void) +{ + psS32 i; + psS32 lev = 0; + + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".", i); + lev = psTraceGetLevel("."); + if (lev != i) { + fprintf(stderr,"ERROR: (.) expected trace level was %d, actual was %d\n", + i, lev); + return 1; + } + } + (void)psTraceSetLevel(".", 3); + + for (i=5;i<10;i++) { + (void)psTraceSetLevel(".NODE00", i); + lev = psTraceGetLevel(".NODE00"); + if (lev != i) { + fprintf(stderr, + "ERROR: (.NODE00) expected trace level was %d, actual was %d\n", + i, lev); + return 2; + } + + lev = psTraceGetLevel("."); + if (lev != 3) { + fprintf(stderr,"ERROR: (.) expected trace level was %d, actual was %d\n", + i, 3); + return 3; + } + } + + + (void)psTraceSetLevel(".NODE00.NODE01", 4); + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".NODE00.NODE01", i); + lev = psTraceGetLevel(".NODE00.NODE01"); + if (lev != i) { + fprintf(stderr, + "ERROR: (.NODE00.NODE01) expected trace level was %d, actual was %d\n", + i, lev); + return 4; + } + } + + return 0; +} + +static psS32 testTrace01(void) +{ + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + (void)psTraceSetLevel(".A.B.C.D.E", 5); + + psTrace(".A.C.D.C",1,"You should not see this.\n"); + psTrace(".A.B.C.D.E",2,"You should see this.\n"); + psTrace(".A.B.C.D.E.F",3,"You should see this too.\n"); + + psTracePrintLevels(); + + return 0; +} + +static psS32 testTrace02(void) +{ + psTraceReset(); + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + psTraceSetLevel(".A.B", 2); + psTraceSetLevel(".A.B.C.D.E", 5); + psTracePrintLevels(); + psTraceSetLevel(".A.B", 10); + psTracePrintLevels(); + + if (10 != psTraceGetLevel(".A.B.C")) { + fprintf(stderr,"ERROR: .A.B.C did not dynamically inherit a trace level (%d)\n", + psTraceGetLevel(".A.B.C")); + return 2; + } + + if (10 != psTraceGetLevel(".A.B.C.D")) { + fprintf(stderr,"ERROR: .A.B.C.D did not dynamically inherit a trace level (%d)\n", psTraceGetLevel(".A.B.C.D")); + return 2; + } + + if (5 != psTraceGetLevel(".A.B.C.D.E")) { + fprintf(stderr,"ERROR: .A.B.C.D.E did dynamically inherit a trace level (%d)\n", psTraceGetLevel(".A.B.C.D.E")); + return 2; + } + + return 0; +} + +static psS32 testTrace03(void) +{ + psS32 i = 0; + psS32 lev = 0; + + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + for (i=0;i<10;i++) { + (void)psTraceSetLevel(".", i); + psTraceReset(); + + lev = psTraceGetLevel("."); + if (lev != PS_UNKNOWN_TRACE_LEVEL) { + fprintf(stderr,"ERROR: expected trace level was %d, actual was %d\n", + PS_UNKNOWN_TRACE_LEVEL, lev); + return 1; + } + } + (void)psTraceSetLevel(".", 5); + (void)psTraceSetLevel(".a", 4); + (void)psTraceSetLevel(".a.b", 3); + (void)psTraceSetLevel(".a.b.c", 2); + if ((5 != psTraceGetLevel(".")) || + (4 != psTraceGetLevel(".a")) || + (3 != psTraceGetLevel(".a.b")) || + (2 != psTraceGetLevel(".a.b.c"))) { + fprintf(stderr,"ERROR: trace successFlag = false;levels were not settable?\n"); + return 2; + } + + psTraceReset(); + if ((PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a.b")) || + (PS_UNKNOWN_TRACE_LEVEL != psTraceGetLevel(".a.b.c"))) { + fprintf(stderr,"ERROR: trace levels were not reset properly\n"); + return 3; + } + + return 0; +} + + +static psS32 testTrace04(void) +{ + int FD; + psS32 nb = 0; + FD = creat("tst_psTrace02_OUT", 0666); + // printf("\nFD = %d\n", FD); + // fp = fopen("tst_psTrace02_OUT", "w"); + for (nb = 0 ; nb<4;nb++) { + if (nb == 0) + // psTraceSetDestination(stdout); + psTraceSetDestination(1); + if (nb == 1) + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + if (nb == 2) + psTraceSetDestination(0); //NULL + if (nb == 3) + psTraceSetDestination(FD); + + (void)psTraceSetLevel(".", 4); + psTrace(".", 5, "(0) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".", 7); + psTrace(".", 5, "(0) This message should be displayed (%x)\n", + 0xbeefface); + + (void)psTraceSetLevel(".a", 4); + psTrace(".a", 5, "(1) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a", 7); + psTrace(".a", 5, "(1) This message should be displayed (%x)\n", + 0xbeefface); + + + (void)psTraceSetLevel(".a.b", 4); + psTrace(".a.b", 5, "(2) This message should not be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a.b", 7); + psTrace(".a.b", 5, "(2) This message should be displayed (%x)\n", + 0xbeefface); + (void)psTraceSetLevel(".a.b.c", 12); + psTrace(".a.b.c", 11, "(3) This message should be displayed (%x)\n", + 0xbeefface); + + } + + close(FD); + + return(0); +} + +static psS32 testTrace05(void) +{ + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTracePrintLevels(); + + return 0; + +} + +static psS32 testTrace05a(void) +{ + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel("a", 8); + (void)psTraceSetLevel("b", 7); + (void)psTraceSetLevel("c", 5); + + (void)psTraceSetLevel("a.a", 4); + (void)psTraceSetLevel("a.b", 3); + + (void)psTraceSetLevel("b.a", 2); + (void)psTraceSetLevel("b.b", 1); + + (void)psTraceSetLevel("c.a", 0); + (void)psTraceSetLevel("c.b", 3); + (void)psTraceSetLevel("c.c", 5); + + psTracePrintLevels(); + + return 0; + +} + +static psS32 testTrace06(void) +{ + // psTraceSetDestination(stderr); + psTraceSetDestination(2); + + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTraceReset(); + + if ((psTraceGetLevel(".")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".a.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".b.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.a")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.b")!=PS_UNKNOWN_TRACE_LEVEL) || + (psTraceGetLevel(".c.c")!=PS_UNKNOWN_TRACE_LEVEL)) { + return 1; + } + + return 0; +} + +// Ensure that the leading dot in the component names are optional. +static psS32 testTrace08(void) +{ + psTraceReset(); + (void)psTraceSetLevel(".", 9); + + (void)psTraceSetLevel(".a", 8); + (void)psTraceSetLevel(".b", 7); + (void)psTraceSetLevel(".c", 5); + + (void)psTraceSetLevel(".a.a", 4); + (void)psTraceSetLevel(".a.b", 3); + + (void)psTraceSetLevel(".b.a", 2); + (void)psTraceSetLevel(".b.b", 1); + + (void)psTraceSetLevel(".c.a", 0); + (void)psTraceSetLevel(".c.b", 3); + (void)psTraceSetLevel(".c.c", 5); + + psTracePrintLevels(); + + if ((psTraceGetLevel(".")!=9) || + (psTraceGetLevel("a")!=8) || + (psTraceGetLevel("b")!=7) || + (psTraceGetLevel("c")!=5) || + (psTraceGetLevel("a.a")!=4) || + (psTraceGetLevel("a.b")!=3) || + (psTraceGetLevel("b.a")!=2) || + (psTraceGetLevel("b.b")!=1) || + (psTraceGetLevel("c.a")!=0) || + (psTraceGetLevel("c.b")!=3) || + (psTraceGetLevel("c.c")!=5)) { + printf("psTraceGetLevel(.) is %d\n", psTraceGetLevel(".")); + printf("psTraceGetLevel(a) is %d\n", psTraceGetLevel("a")); + printf("psTraceGetLevel(b) is %d\n", psTraceGetLevel("b")); + printf("psTraceGetLevel(c) is %d\n", psTraceGetLevel("c")); + printf("psTraceGetLevel(a.a) is %d\n", psTraceGetLevel("a.a")); + printf("psTraceGetLevel(a.b) is %d\n", psTraceGetLevel("a.b")); + printf("psTraceGetLevel(b.a) is %d\n", psTraceGetLevel("b.a")); + printf("psTraceGetLevel(b.b) is %d\n", psTraceGetLevel("b.b")); + printf("psTraceGetLevel(c.a) is %d\n", psTraceGetLevel("c.a")); + printf("psTraceGetLevel(c.b) is %d\n", psTraceGetLevel("c.b")); + printf("psTraceGetLevel(c.c) is %d\n", psTraceGetLevel("c.c")); + + return 1; + } + + return 0; +} Index: /branches/rel-1-1/psLib/test/tap/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +.in +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +config.log +config.status +configure +libtool +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/INSTALL =================================================================== --- /branches/rel-1-1/psLib/test/tap/INSTALL (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/INSTALL (revision 12167) @@ -0,0 +1,8 @@ +Quick Installation + + ./configure + make + make check + make install + +Run "configure --help" for additional options. Index: /branches/rel-1-1/psLib/test/tap/LICENSE =================================================================== --- /branches/rel-1-1/psLib/test/tap/LICENSE (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/LICENSE (revision 12167) @@ -0,0 +1,23 @@ +Copyright (c) 2004 Nik Clayton +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions +are met: +1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. +2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE +ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS +OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) +HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT +LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY +OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF +SUCH DAMAGE. Index: /branches/rel-1-1/psLib/test/tap/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/Makefile.am (revision 12167) @@ -0,0 +1,5 @@ +SUBDIRS = src +#SUBDIRS += tests + +prove: + prove -v -r Index: /branches/rel-1-1/psLib/test/tap/README =================================================================== --- /branches/rel-1-1/psLib/test/tap/README (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/README (revision 12167) @@ -0,0 +1,11 @@ +NAME + tap -- write tests that implement the Test Anything Protocol + +SYNOPSIS + #include + +DESCRIPTION + The tap library provides functions for writing test scripts that produce + output consistent with the Test Anything Protocol. A test harness that + parses this protocol can run these tests and produce useful reports indi- + cating their success or failure. Index: /branches/rel-1-1/psLib/test/tap/bootstrap.sh =================================================================== --- /branches/rel-1-1/psLib/test/tap/bootstrap.sh (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/bootstrap.sh (revision 12167) @@ -0,0 +1,8 @@ +#!/bin/sh + +set -x +aclocal19 -I /usr/local/share/aclocal || aclocal || exit 1 +autoheader259 || autoheader || exit 1 +libtoolize15 -c -f || libtoolize -c -f || glibtoolize -c -f || exit 1 +automake19 -a -c || automake -a -c || exit 1 +autoconf259 || autoconf || exit 1 Index: /branches/rel-1-1/psLib/test/tap/compile =================================================================== --- /branches/rel-1-1/psLib/test/tap/compile (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/compile (revision 12167) @@ -0,0 +1,142 @@ +#! /bin/sh +# Wrapper for compilers which do not understand `-c -o'. + +scriptversion=2004-10-12.08 + +# Copyright (C) 1999, 2000, 2003, 2004 Free Software Foundation, Inc. +# Written by Tom Tromey . +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation; either version 2, or (at your option) +# any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. + +# As a special exception to the GNU General Public License, if you +# distribute this file as part of a program that contains a +# configuration script generated by Autoconf, you may include it under +# the same distribution terms that you use for the rest of that program. + +# This file is maintained in Automake, please report +# bugs to or send patches to +# . + +case $1 in + '') + echo "$0: No command. Try \`$0 --help' for more information." 1>&2 + exit 1; + ;; + -h | --h*) + cat <<\EOF +Usage: compile [--help] [--version] PROGRAM [ARGS] + +Wrapper for compilers which do not understand `-c -o'. +Remove `-o dest.o' from ARGS, run PROGRAM with the remaining +arguments, and rename the output as expected. + +If you are trying to build a whole package this is not the +right script to run: please start by reading the file `INSTALL'. + +Report bugs to . +EOF + exit 0 + ;; + -v | --v*) + echo "compile $scriptversion" + exit 0 + ;; +esac + +ofile= +cfile= +eat= + +for arg +do + if test -n "$eat"; then + eat= + else + case $1 in + -o) + # configure might choose to run compile as `compile cc -o foo foo.c'. + # So we strip `-o arg' only if arg is an object. + eat=1 + case $2 in + *.o | *.obj) + ofile=$2 + ;; + *) + set x "$@" -o "$2" + shift + ;; + esac + ;; + *.c) + cfile=$1 + set x "$@" "$1" + shift + ;; + *) + set x "$@" "$1" + shift + ;; + esac + fi + shift +done + +if test -z "$ofile" || test -z "$cfile"; then + # If no `-o' option was seen then we might have been invoked from a + # pattern rule where we don't need one. That is ok -- this is a + # normal compilation that the losing compiler can handle. If no + # `.c' file was seen then we are probably linking. That is also + # ok. + exec "$@" +fi + +# Name of file we expect compiler to create. +cofile=`echo "$cfile" | sed -e 's|^.*/||' -e 's/\.c$/.o/'` + +# Create the lock directory. +# Note: use `[/.-]' here to ensure that we don't use the same name +# that we are using for the .o file. Also, base the name on the expected +# object file name, since that is what matters with a parallel build. +lockdir=`echo "$cofile" | sed -e 's|[/.-]|_|g'`.d +while true; do + if mkdir "$lockdir" >/dev/null 2>&1; then + break + fi + sleep 1 +done +# FIXME: race condition here if user kills between mkdir and trap. +trap "rmdir '$lockdir'; exit 1" 1 2 15 + +# Run the compile. +"$@" +ret=$? + +if test -f "$cofile"; then + mv "$cofile" "$ofile" +elif test -f "${cofile}bj"; then + mv "${cofile}bj" "$ofile" +fi + +rmdir "$lockdir" +exit $ret + +# Local Variables: +# mode: shell-script +# sh-indentation: 2 +# eval: (add-hook 'write-file-hooks 'time-stamp) +# time-stamp-start: "scriptversion=" +# time-stamp-format: "%:y-%02m-%02d.%02H" +# time-stamp-end: "$" +# End: Index: /branches/rel-1-1/psLib/test/tap/configure.in =================================================================== --- /branches/rel-1-1/psLib/test/tap/configure.in (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/configure.in (revision 12167) @@ -0,0 +1,44 @@ +AC_INIT(tap, 1.01) +AC_CONFIG_SRCDIR(src/tap.c) +AM_INIT_AUTOMAKE([foreign]) +AC_CONFIG_HEADERS([src/config.h]) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_LIBTOOL +AC_PROG_INSTALL + +# Checks for libraries +case "$host" in + *-*-*freebsd4*) + LDFLAGS="$LDFLAGS -pthread" + HAVE_LIBPTHREAD=1 + ;; + *) + AC_CHECK_LIB(pthread, main) + ;; +esac + +dnl build tests at the same time as the source code +AC_ARG_ENABLE(tests, + [AS_HELP_STRING(--enable-tests,build tests at same time as source)], + [AC_MSG_RESULT(test building enabled) + tests=true], + [tests=false]) +AM_CONDITIONAL(BUILD_TESTS, test x$tests = xtrue) + +# Checks for header files +AC_HEADER_STDC +AC_CHECK_HEADERS([stdlib.h]) +AC_CHECK_HEADERS([pthread.h]) + +# Checks for typedefs, structures, and compiler characteristics. +AC_C_CONST + +# Checks for library functions. +AC_FUNC_VPRINTF +AC_CHECK_FUNCS([atexit]) + +AC_CONFIG_FILES([Makefile + src/Makefile + ]) +AC_OUTPUT Index: /branches/rel-1-1/psLib/test/tap/src/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/src/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +.deps +.libs +Makefile +Makefile.in +libtap.la +tap.lo +config.h +config.h.in +stamp-h1 +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/src/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/src/Makefile.am (revision 12167) @@ -0,0 +1,9 @@ +TEST_LTLIBS = libtap.la +libtap_la_SOURCES = tap.c tap.h +noinst_HEADERS = tap.h + +noinst_LTLIBRARIES = $(TEST_LTLIBS) + +#man_MANS = tap.3 +EXTRA_DIST = $(man_MANS) + Index: /branches/rel-1-1/psLib/test/tap/src/tap.3 =================================================================== --- /branches/rel-1-1/psLib/test/tap/src/tap.3 (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/src/tap.3 (revision 12167) @@ -0,0 +1,380 @@ +.Dd December 20, 2004 +.Os +.Dt TAP 3 +.Sh NAME +.Nm tap +.Nd write tests that implement the Test Anything Protocol +.Sh SYNOPSIS +.In tap.h +.Sh DESCRIPTION +The +.Nm +library provides functions for writing test scripts that produce output +consistent with the Test Anything Protocol. A test harness that parses +this protocol can run these tests and produce useful reports indicating +their success or failure. +.Ss PRINTF STRINGS +In the descriptions that follow, for any function that takes as the +last two parameters +.Dq Fa char * , Fa ... +it can be assumed that the +.Fa char * +is a +.Fn printf +-like format string, and the optional arguments are values to be placed +in that string. +.Ss TEST PLANS +.Bl -tag -width indent +.It Xo +.Ft int +.Fn plan_tests "unsigned int" +.Xc +.It Xo +.Ft int +.Fn plan_no_plan "void" +.Xc +.It Xo +.Ft int +.Fn plan_skip_all "char *" "..." +.Xc +.El +.Pp +You must first specify a test plan. This indicates how many tests you +intend to run, and allows the test harness to notice if any tests were +missed, or if the test program exited prematurely. +.Pp +To do this, use +.Fn plan_tests , +which returns the number of planned tests. The function will cause +your program to exit prematurely if you specify 0 tests. +.Pp +In some situations you may not know how many tests you will be running, or +you are developing your test program, and do not want to update the +.Fn plan_tests +parameter every time you make a change. For those situations use +.Fn plan_no_plan . +It returns 1, and indicates to the test harness that an indeterminate number +of tests will be run. +.Pp +Both +.Fn plan_tests +and +.Fn plan_no_plan +will cause your test program to exit prematurely with a diagnostic +message if they are called more than once. +.Pp +If your test program detects at run time that some required functionality +is missing (for example, it relies on a database connection which is not +present, or a particular configuration option that has not been included +in the running kernel) use +.Fn plan_skip_all , +passing as parameters a string to display indicating the reason for skipping +the tests. +.Ss SIMPLE TESTS +.Bl -tag -width indent +.It Xo +.Ft unsigned int +.Fn ok "expression" "char *" "..." +.Xc +.It Xo +.Ft unsigned int +.Fn ok1 "expression" +.Xc +.It Xo +.Ft unsigned int +.Fn pass "char *" "..." +.Xc +.It Xo +.Ft unsigned int +.Fn fail "char *" "..." +.Xc +.El +.Pp +Tests are implemented as expressions checked by calls to the +.Fn ok +and +.Fn ok1 +macros. In both cases +.Fa expression +should evaluate to true if the test succeeded. +.Pp +.Fn ok +allows you to specify a name, or comment, describing the test which will +be included in the output. +.Fn ok1 +is for those times when the expression to be tested is self +explanatory and does not need an associated comment. In those cases +the test expression becomes the comment. +.Pp +These four calls are equivalent: +.Bd -literal -offset indent +int i = 5; + +ok(i == 5, "i equals 5"); /* Overly verbose */ +ok(i == 5, "i equals %d", i); /* Just to demonstrate printf-like + behaviour of the test name */ +ok(i == 5, "i == 5"); /* Needless repetition */ +ok1(i == 5); /* Just right */ +.Ed +.Pp +It is good practice to ensure that the test name describes the meaning +behind the test rather than what you are testing. Viz +.Bd -literal -offset indent +ok(db != NULL, "db is not NULL"); /* Not bad, but */ +ok(db != NULL, "Database conn. succeeded"); /* this is better */ +.Ed +.Pp +.Fn ok +and +.Fn ok1 +return 1 if the expression evaluated to true, and 0 if it evaluated to +false. This lets you chain calls from +.Fn ok +to +.Fn diag +to only produce diagnostic output if the test failed. For example, this +code will include diagnostic information about why the database connection +failed, but only if the test failed. +.Bd -literal -offset indent +ok(db != NULL, "Database conn. succeeded") || + diag("Database error code: %d", dberrno); +.Ed +.Pp +You also have +.Fn pass +and +.Fn fail . +From the Test::More documentation: +.Bd -literal -offset indent +Sometimes you just want to say that the tests have passed. +Usually the case is you've got some complicated condition +that is difficult to wedge into an ok(). In this case, +you can simply use pass() (to declare the test ok) or fail +(for not ok). + +Use these very, very, very sparingly. +.Ed +.Pp +These are synonyms for ok(1, ...) and ok(0, ...). +.Ss SKIPPING TESTS +.Bl -tag -width indent +.It Xo +.Ft int +.Fn skip "unsigned int" "char *" "..." +.Xc +.It Xo +.Fn skip_start "expression" "unsigned int" "char *" "..." +.Xc +.It Xo +.Fn skip_end +.Xc +.El +.Pp +Sets of tests can be skipped. Ordinarily you would do this because +the test can't be run in this particular testing environment. +.Pp +For example, suppose some tests should be run as root. If the test is +not being run as root then the tests should be skipped. In this +implementation, skipped tests are flagged as being ok, with a special +message indicating that they were skipped. It is your responsibility +to ensure that the number of tests skipped (the first parameter to +.Fn skip ) +is correct for the number of tests to skip. +.Pp +One way of implementing this is with a +.Dq do { } while(0); +loop, or an +.Dq if( ) { } else { } +construct, to ensure that there are no additional side effects from the +skipped tests. +.Bd -literal -offset indent +if(getuid() != 0) { + skip(1, "because test only works as root"); +} else { + ok(do_something_as_root() == 0, "Did something as root"); +} +.Ed +.Pp +Two macros are provided to assist with this. The previous example could +be re-written as follows. +.Bd -literal -offset indent +skip_start(getuid() != 0, 1, "because test only works as root"); + +ok(do_something_as_root() == 0, "Did something as root"); + +skip_end(); +.Ed +.Ss MARKING TESTS AS Dq TODO +.Bl -tag -width indent +.It Xo +.Ft void +.Fn todo_start "char *" "..." +.Xc +.It Xo +.Ft void +.Fn todo_end "void" +.Xc +.El +.Pp +Sets of tests can be flagged as being +.Dq TODO . +These are tests that you expect to fail, probably because you haven't +fixed a bug, or finished a new feature yet. These tests will still be +run, but with additional output that indicates that they are expected +to fail. Should a test start to succeed unexpectedly, tools like +.Xr prove 1 +will indicate this, and you can move the test out of the todo +block. This is much more useful than simply commenting out (or +.Dq #ifdef 0 ... #endif ) +the tests. +.Bd -literal -offset indent +todo_start("dwim() not returning true yet"); + +ok(dwim(), "Did what the user wanted"); + +todo_end(); +.Ed +.Pp +Should +.Fn dwim +ever start succeeding you will know about it as soon as you run the +tests. Note that +.Em unlike +the +.Fn skip_* +family, additional code between +.Fn todo_start +and +.Fn todo_end +.Em is +executed. +.Ss SKIP vs. TODO +From the Test::More documentation; +.Bd -literal -offset indent +If it's something the user might not be able to do, use SKIP. +This includes optional modules that aren't installed, running +under an OS that doesn't have some feature (like fork() or +symlinks), or maybe you need an Internet connection and one +isn't available. + +If it's something the programmer hasn't done yet, use TODO. +This is for any code you haven't written yet, or bugs you have +yet to fix, but want to put tests in your testing script +(always a good idea). +.Ed +.Ss DIAGNOSTIC OUTPUT +.Bl -tag -width indent +.It Xo +.Fr unsigned int +.Fn diag "char *" "..." +.Xc +.El +.Pp +If your tests need to produce diagnostic output, use +.Fn diag . +It ensures that the output will not be considered by the TAP test harness. +.Fn diag +adds the necessary trailing +.Dq \en +for you. +.Bd -literal -offset indent +diag("Expected return code 0, got return code %d", rcode); +.Ed +.Pp +.Fn diag +always returns 0. +.Ss EXIT STATUS +.Bl -tag -width indent +.It Xo +.Fr int +.Fn exit_status void +.Xc +.El +.Pp +For maximum compatability your test program should return a particular +exit code. This is calculated by +.Fn exit_status +so it is sufficient to always return from +.Fn main +with either +.Dq return exit_status(); +or +.Dq exit(exit_status()); +as appropriate. +.Sh ENVIRONMENT +The following environment variables affect +.Nm . +.Bl -tag -width indent +.It Ev HARNESS_ACTIVE +Causes an extra +.Dq \en +to be printed before any diagnostic failure output generated by +.Nm . +This variable is normally set if tests are being run under Perl's +Test::Harness. +.El +.Sh EXAMPLES +The +.Pa tests +directory in the source distribution contains numerous tests of +.Nm +functionality, written using +.Nm . +Examine them for examples of how to construct test suites. +.Sh COMPATABILITY +.Nm +strives to be compatible with the Perl Test::More and Test::Harness +modules. The test suite verifies that +.Nm +is bug-for-bug compatible with their behaviour. This is why some +functions which would more naturally return nothing return constant +values. +.Pp +If the +.Lb libpthread +is found at compile time, +.Nm +.Em should +be thread safe. Indications to the contrary (and test cases that expose +incorrect behaviour) are very welcome. +.Sh SEE ALSO +.Xr Test::More 1 , +.Xr Test::Harness 1 , +.Xr prove 1 +.Sh STANDARDS +.Nm +requires a +.St -isoC-99 +compiler. Some of the +.Nm +functionality is implemented as variadic macros, and that functionality +was not formally codified until C99. Patches to use +.Nm +with earlier compilers that have their own implementation of variadic +macros will be gratefully received. +.Sh HISTORY +.Nm +was written to help improve the quality and coverage of the FreeBSD +regression test suite, and released in the hope that others find it +a useful tool to help improve the quality of their code. +.Sh AUTHORS +.An "Nik Clayton" Aq nik@ngo.org.uk , +.Aq nik@FreeBSD.org +.Pp +.Nm +would not exist without the efforts of +.An "Michael G Schwern" Aq schqern@pobox.com , +.An "Andy Lester" Aq andy@petdance.com , +and the countless others who have worked on the Perl QA programme. +.Sh BUGS +Ideally, running the tests would have no side effects on the behaviour +of the application you are testing. However, it is not always possible +to avoid them. The following side effects of using +.Nm +are known. +.Bl -bullet -offset indent +.It +stdout is set to unbuffered mode after calling any of the +.Fn plan_* +functions. +.El Index: /branches/rel-1-1/psLib/test/tap/src/tap.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/src/tap.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/src/tap.c (revision 12167) @@ -0,0 +1,430 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "tap.h" + +static int no_plan = 0; +static int skip_all = 0; +static int have_plan = 0; +static unsigned int test_count = 0; /* Number of tests that have been run */ +static unsigned int e_tests = 0; /* Expected number of tests to run */ +static unsigned int failures = 0; /* Number of tests that failed */ +static char *todo_msg = NULL; +static char *todo_msg_fixed = "libtap malloc issue"; +static int todo = 0; +static int test_died = 0; + +/* Encapsulate the pthread code in a conditional. In the absence of + libpthread the code does nothing */ +#ifdef HAVE_LIBPTHREAD +#include +static pthread_mutex_t M = PTHREAD_MUTEX_INITIALIZER; +# define LOCK pthread_mutex_lock(&M); +# define UNLOCK pthread_mutex_unlock(&M); +#else +# define LOCK +# define UNLOCK +#endif + +static void _expected_tests(unsigned int); +static void _tap_init(void); +static void _cleanup(void); + +/* + * Generate a test result. + * + * ok -- boolean, indicates whether or not the test passed. + * test_name -- the name of the test, may be NULL + * test_comment -- a comment to print afterwards, may be NULL + */ +unsigned int +_gen_result(int ok, const char *func, char *file, unsigned int line, + char *test_name, ...) +{ + va_list ap; + char *local_test_name = NULL; + char *c; + int name_is_digits; + + LOCK; + + test_count++; + + /* Start by taking the test name and performing any printf() + expansions on it */ + if(test_name != NULL) { + va_start(ap, test_name); + vasprintf(&local_test_name, test_name, ap); + va_end(ap); + + /* Make sure the test name contains more than digits + and spaces. Emit an error message and exit if it + does */ + if(local_test_name) { + name_is_digits = 1; + for(c = local_test_name; *c != '\0'; c++) { + if(!isdigit(*c) && !isspace(*c)) { + name_is_digits = 0; + break; + } + } + + if(name_is_digits) { + diag(" You named your test '%s'. You shouldn't use numbers for your test names.", local_test_name); + diag(" Very confusing."); + } + } + } + + if(!ok) { + printf("not "); + failures++; + } + + printf("ok %d", test_count); + + if(test_name != NULL) { + printf(" - "); + + /* Print the test name, escaping any '#' characters it + might contain */ + if(local_test_name != NULL) { + flockfile(stdout); + for(c = local_test_name; *c != '\0'; c++) { + if(*c == '#') + fputc('\\', stdout); + fputc((int)*c, stdout); + } + funlockfile(stdout); + } else { /* vasprintf() failed, use a fixed message */ + printf("%s", todo_msg_fixed); + } + } + + /* If we're in a todo_start() block then flag the test as being + TODO. todo_msg should contain the message to print at this + point. If it's NULL then asprintf() failed, and we should + use the fixed message. + + This is not counted as a failure, so decrement the counter if + the test failed. */ + if(todo) { + printf(" # TODO %s", todo_msg ? todo_msg : todo_msg_fixed); + if(!ok) + failures--; + } + + printf("\n"); + + if(!ok) { + if(getenv("HARNESS_ACTIVE") != NULL) + fputs("\n", stderr); + + diag(" Failed %stest (%s:%s() at line %d)", + todo ? "(TODO) " : "", file, func, line); + } + free(local_test_name); + + UNLOCK; + + /* We only care (when testing) that ok is positive, but here we + specifically only want to return 1 or 0 */ + return ok ? 1 : 0; +} + +/* + * Initialise the TAP library. Will only do so once, however many times it's + * called. + */ +void +_tap_init(void) +{ + static int run_once = 0; + + if(!run_once) { + atexit(_cleanup); + + /* stdout needs to be unbuffered so that the output appears + in the same place relative to stderr output as it does + with Test::Harness */ + setbuf(stdout, 0); + run_once = 1; + } +} + +/* + * Note that there's no plan. + */ +int +plan_no_plan(void) +{ + + LOCK; + + _tap_init(); + + if(have_plan != 0) { + fprintf(stderr, "You tried to plan twice!\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + have_plan = 1; + no_plan = 1; + + UNLOCK; + + return 1; +} + +/* + * Note that the plan is to skip all tests + */ +int +plan_skip_all(char *reason) +{ + + LOCK; + + _tap_init(); + + skip_all = 1; + + printf("1..0"); + + if(reason != NULL) + printf(" # Skip %s", reason); + + printf("\n"); + + UNLOCK; + + exit(0); +} + +/* + * Note the number of tests that will be run. + */ +int +plan_tests(unsigned int tests) +{ + + LOCK; + + _tap_init(); + + if(have_plan != 0) { + fprintf(stderr, "You tried to plan twice!\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + if(tests == 0) { + fprintf(stderr, "You said to run 0 tests! You've got to run something.\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + have_plan = 1; + + _expected_tests(tests); + + UNLOCK; + + return e_tests; +} + +unsigned int +diag(char *fmt, ...) +{ + va_list ap; + + fputs("# ", stderr); + + va_start(ap, fmt); + vfprintf(stderr, fmt, ap); + va_end(ap); + + fputs("\n", stderr); + + return 0; +} + +void +_expected_tests(unsigned int tests) +{ + + printf("1..%d\n", tests); + e_tests = tests; +} + +int +skip(unsigned int n, char *fmt, ...) +{ + va_list ap; + char *skip_msg; + + LOCK; + + va_start(ap, fmt); + asprintf(&skip_msg, fmt, ap); + va_end(ap); + + while(n-- > 0) { + test_count++; + printf("ok %d # skip %s\n", test_count, + skip_msg != NULL ? + skip_msg : "libtap():malloc() failed"); + } + + free(skip_msg); + + UNLOCK; + + return 1; +} + +void +todo_start(char *fmt, ...) +{ + va_list ap; + + LOCK; + + va_start(ap, fmt); + vasprintf(&todo_msg, fmt, ap); + va_end(ap); + + todo = 1; + + UNLOCK; +} + +void +todo_end(void) +{ + + LOCK; + + todo = 0; + free(todo_msg); + + UNLOCK; +} + +int +exit_status(void) +{ + int r; + + LOCK; + + /* If there's no plan, just return the number of failures */ + if(no_plan || !have_plan) { + UNLOCK; + return failures; + } + + /* Ran too many tests? Return the number of tests that were run + that shouldn't have been */ + if(e_tests < test_count) { + r = test_count - e_tests; + UNLOCK; + return r; + } + + /* Return the number of tests that failed + the number of tests + that weren't run */ + r = failures + e_tests - test_count; + UNLOCK; + + return r; +} + +/* + * Cleanup at the end of the run, produce any final output that might be + * required. + */ +void +_cleanup(void) +{ + + LOCK; + + /* If plan_no_plan() wasn't called, and we don't have a plan, + and we're not skipping everything, then something happened + before we could produce any output */ + if(!no_plan && !have_plan && !skip_all) { + diag("Looks like your test died before it could output anything."); + UNLOCK; + return; + } + + if(test_died) { + diag("Looks like your test died just after %d.", test_count); + UNLOCK; + return; + } + + + /* No plan provided, but now we know how many tests were run, and can + print the header at the end */ + if(!skip_all && (no_plan || !have_plan)) { + printf("1..%d\n", test_count); + } + + if((have_plan && !no_plan) && e_tests < test_count) { + diag("Looks like you planned %d %s but ran %d extra.", + e_tests, e_tests == 1 ? "test" : "tests", test_count - e_tests); + UNLOCK; + return; + } + + if((have_plan || !no_plan) && e_tests > test_count) { + diag("Looks like you planned %d %s but only ran %d.", + e_tests, e_tests == 1 ? "test" : "tests", test_count); + UNLOCK; + return; + } + + if(failures) + diag("Looks like you failed %d %s of %d.", + failures, failures == 1 ? "test" : "tests", test_count); + + UNLOCK; +} Index: /branches/rel-1-1/psLib/test/tap/src/tap.h =================================================================== --- /branches/rel-1-1/psLib/test/tap/src/tap.h (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/src/tap.h (revision 12167) @@ -0,0 +1,89 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +/* '## __VA_ARGS__' is a gcc'ism. C99 doesn't allow the token pasting + and requires the caller to add the final comma if they've ommitted + the optional arguments */ +#ifdef __GNUC__ +# define ok(e, test, ...) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, \ + test, ## __VA_ARGS__) : \ + _gen_result(0, __func__, __FILE__, __LINE__, \ + test, ## __VA_ARGS__)) + +# define ok1(e) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, "%s", #e) : \ + _gen_result(0, __func__, __FILE__, __LINE__, "%s", #e)) + +# define pass(test, ...) ok(1, test, ## __VA_ARGS__); +# define fail(test, ...) ok(0, test, ## __VA_ARGS__); + +# define skip_start(test, n, fmt, ...) \ + do { \ + if((test)) { \ + skip(n, fmt, ## __VA_ARGS__); \ + continue; \ + } +#elif __STDC_VERSION__ >= 199901L /* __GNUC__ */ +# define ok(e, ...) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, \ + __VA_ARGS__) : \ + _gen_result(0, __func__, __FILE__, __LINE__, \ + __VA_ARGS__)) + +# define ok1(e) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, "%s", #e) : \ + _gen_result(0, __func__, __FILE__, __LINE__, "%s", #e)) + +# define pass(...) ok(1, __VA_ARGS__); +# define fail(...) ok(0, __VA_ARGS__); + +# define skip_start(test, n, ...) \ + do { \ + if((test)) { \ + skip(n, __VA_ARGS__); \ + continue; \ + } +#else /* __STDC_VERSION__ */ +# error "Needs gcc or C99 compiler for variadic macros." +#endif /* __STDC_VERSION__ */ + +#define skip_end() } while(0); + +unsigned int _gen_result(int, const char *, char *, unsigned int, char *, ...); + +int plan_no_plan(void); +int plan_skip_all(char *); +int plan_tests(unsigned int); + +unsigned int diag(char *, ...); + +int skip(unsigned int, char *, ...); + +void todo_start(char *, ...); +void todo_end(void); + +int exit_status(void); Index: /branches/rel-1-1/psLib/test/tap/tests/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +SUBDIRS= diag +SUBDIRS+= fail +SUBDIRS+= ok +SUBDIRS+= pass +SUBDIRS+= plan +SUBDIRS+= skip +SUBDIRS+= todo Index: /branches/rel-1-1/psLib/test/tap/tests/README =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/README (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/README (revision 12167) @@ -0,0 +1,12 @@ +Most of the tests follow the same pattern. + + * test.pl that uses Test::More, and demonstrates whatever functionality + that we're trying to test. This is the reference code. + + * test.c, which tests the libtap reimplementation of the same functionality. + + * test.t, which compiles the .c program, runs both test scripts, and then + diffs their output to make sure it's identical. + + Right now, test.t is identical in every directory. This sucks somewhat. + It should either be a symlink to a common script Index: /branches/rel-1-1/psLib/test/tap/tests/diag/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/diag/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/diag/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/diag/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/diag/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/diag/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/diag/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/diag/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/diag/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + plan_tests(2); + + rc = diag("A diagnostic message"); + diag("Returned: %d", rc); + + /* Make sure the failure is passed through */ + ok(1, "test 1") || diag("ok() failed, and shouldn't"); + ok(0, "test 2") || diag("ok() passed, and shouldn't"); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/diag/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/diag/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/diag/test.pl (revision 12167) @@ -0,0 +1,16 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +plan tests => 2; + +$rc = diag("A diagnostic message"); +diag("Returned: $rc"); + +ok(1, 'test 1') or diag "ok() failed, and shouldn't"; +ok(0, 'test 2') or diag "ok() passed, and shouldn't"; Index: /branches/rel-1-1/psLib/test/tap/tests/diag/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/diag/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/diag/test.t (revision 12167) @@ -0,0 +1,67 @@ +#!/bin/sh + +echo '1..7' + +perl $srcdir/test.pl 2>/dev/null >test.pl.out +perlstatus=$? + +./test > test.c.out 2>&1 +cstatus=$? + +if grep "^# A diagnostic message$" test.c.out > /dev/null ; then + echo "ok 1 - found a diagnostic message" +else + echo "not ok 1 - found a diagnostic message" + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out > /dev/null ; then + echo "ok 2 - diag() expected return value" +else + echo "not ok 2 - diag() expected return value" + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 43)$" test.c.out > /dev/null ; then + echo "ok 3 - 'failed test at line' diag" +else + echo "not ok 3 - 'failed test at line' diag" + retval=1 +fi + +if grep "^# ok() passed, and shouldn't$" test.c.out > /dev/null ; then + echo "ok 4 - expected diag" +else + echo "ok 4 - expected diag" + retval=1 +fi + +if grep "^# Looks like you failed 1 test of 2.$" test.c.out > /dev/null ; then + echo "ok 5 - failed 1 test" + else + echo "ok 5 - failed 1 test" + retval=1 +fi + +sed -e '/^#/D' test.c.out > tmp +mv tmp test.c.out + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 6 - TAP output is identical' +else + retval=1 + echo 'not ok 6 - TAP output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 7 - status code' +else + retval=1 + echo 'not ok 7 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/fail/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/fail/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/fail/.cvsignore (revision 12167) @@ -0,0 +1,15 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/fail/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/fail/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/fail/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/fail/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/fail/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/fail/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(2); + diag("Returned: %d", rc); + + rc = fail("test to fail"); + diag("Returned: %d", rc); + + rc = fail("test to fail %s", "with extra string"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/fail/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/fail/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/fail/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 2; +diag("Returned: " . sprintf('%d', $rc)); + +$rc = fail('test to fail'); +diag("Returned: $rc"); + +$rc = fail('test to fail with extra string'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/fail/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/fail/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/fail/test.t (revision 12167) @@ -0,0 +1,74 @@ +#!/bin/sh + +echo '1..8' + +perl $srcdir/test.pl 2>/dev/null > test.pl.out +perlstatus=$? + +./test > test.c.out 2>&1 +cstatus=$? + +if grep "^# Returned: 2$" test.c.out >/dev/null ; then + echo "ok 1 - expected return value"; +else + echo "not ok 1 - expected return value"; + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 39)$" test.c.out >/dev/null ; then + echo "ok 2 - failed expected test"; +else + echo "not ok 2 - failed expected test"; + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out >/dev/null ; then + echo "ok 3 - expected return value"; +else + echo "not ok 3 - expected return value"; + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 42)$" test.c.out >/dev/null ; then + echo "ok 4 - failed expected test"; +else + echo "not ok 4 - failed expected test"; + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out >/dev/null ; then + echo "ok 5 - expected return value"; +else + echo "not ok 5 - expected return value"; + retval=1 +fi + +if grep "^# Looks like you failed 2 tests of 2.$" test.c.out >/dev/null ; then + echo "ok 6 - expected return value"; +else + echo "not ok 6 - expected return value"; + retval=1 +fi + +sed -e '/^#/D' test.c.out > tmp +mv tmp test.c.out + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 7 - output is identical' +else + retval=1 + echo 'not ok 7 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 8 - status code' +else + retval=1 + echo 'not ok 8 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/ok/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = ok +SUBDIRS += ok-hash +SUBDIRS += ok-numeric Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.c (revision 12167) @@ -0,0 +1,52 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(4); + diag("Returned: %d", rc); + + rc = ok(1, "Test with no hash"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with one # hash"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with # two # hashes"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with ## back to back hashes"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.pl (revision 12167) @@ -0,0 +1,24 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 4; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1, 'Test with no hash'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with one # hash'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with # two # hashes'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with ## back to back hashes'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-hash/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(3); + diag("Returned: %d", rc); + + rc = ok(1, "First test"); + diag("Returned: %d", rc); + + rc = ok(1, "1"); + diag("Returned: %d", rc); + + rc = ok(1, "Third test"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.pl (revision 12167) @@ -0,0 +1,21 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 3; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1, 'First test'); +diag("Returned: $rc"); + +$rc = ok(1, '1'); +diag("Returned: $rc"); + +$rc = ok(1, 'Third test'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok-numeric/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.c (revision 12167) @@ -0,0 +1,55 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals %d", 1); + diag("Returned: %d", rc); + + rc = ok1(1 == 1); + diag("Returned: %d", rc); + + rc = ok(1 == 2, "1 equals 2"); + diag("Returned: %d", rc); + + rc = ok1(1 == 2); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.pl (revision 12167) @@ -0,0 +1,27 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +$rc = ok(1 == 1, '1 equals 1'); # Used for %d testing in test.c +diag("Returned: $rc"); + +$rc = ok(1 == 1, '1 == 1'); # Test ok1() passes when it should +diag("Returned: $rc"); + +$rc = ok(1 == 2, '1 equals 2'); # Test ok() fails when it should +diag("Returned: $rc"); + +$rc = ok(1 == 2, '1 == 2'); # Test ok1() fails when it should +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/ok/ok/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/pass/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/pass/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/pass/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/pass/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/pass/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/pass/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/pass/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/pass/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/pass/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(2); + diag("Returned: %d", rc); + + rc = pass("test to pass"); + diag("Returned: %d", rc); + + rc = pass("test to pass %s", "with extra string"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/pass/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/pass/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/pass/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 2; +diag("Returned: " . sprintf('%d', $rc)); + +$rc = pass('test to pass'); +diag("Returned: $rc"); + +$rc = pass('test to pass with extra string'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/pass/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/pass/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/pass/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +SUBDIRS = no-tests +SUBDIRS += no_plan +SUBDIRS += not-enough-tests +SUBDIRS += too-many-plans +SUBDIRS += too-many-tests +SUBDIRS += sane +SUBDIRS += skip_all Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(0); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 0; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no-tests/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_no_plan(); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +my $rc = 0; + +use Test::More; + +$rc = plan qw(no_plan); +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/no_plan/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.pl (revision 12167) @@ -0,0 +1,20 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/not-enough-tests/test.t (revision 12167) @@ -0,0 +1,30 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + # comment this out until we're exit-code compatible with Test::More + #retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/sane/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/sane/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/sane/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/sane/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/sane/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/sane/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/sane/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/plan.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/plan.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/plan.c (revision 12167) @@ -0,0 +1,39 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include +#include + +#include "tap.h" + +/* Run pre-defined tests on the test library to make sure that the basic + functionality works, and it can be used to test itself afterwards */ + +int +main(int argc, char *argv[]) +{ + plan_skip_all("No good reason"); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.c (revision 12167) @@ -0,0 +1,38 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_skip_all("No good reason"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.pl (revision 12167) @@ -0,0 +1,11 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan skip_all => "No good reason"; +diag("Returned: " . sprintf("%d", $rc)); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/skip_all/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(0, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.pl (revision 12167) @@ -0,0 +1,20 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = plan tests => 1; +diag("Returned: $rc"); + +$rc = ok(0); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-plans/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(0, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(0); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/plan/too-many-tests/test.t (revision 12167) @@ -0,0 +1,30 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + # we're not exit-status compatible with Test::More yet + #retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/skip/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/skip/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/skip/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/skip/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/skip/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/skip/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/skip/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/skip/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/skip/test.c (revision 12167) @@ -0,0 +1,69 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + unsigned int side_effect = 0; + + rc = plan_tests(4); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); /* Should always work */ + diag("Returned: %d", rc); + + do { + if(1) { + rc = skip(1, "Testing skipping"); + continue; + } + + side_effect++; + + ok(side_effect == 1, "side_effect checked out"); + + } while(0); + + diag("Returned: %d", rc); + + skip_start(1 == 1, 1, "Testing skipping #2"); + + side_effect++; + rc = ok(side_effect == 1, "side_effect checked out"); + diag("Returned: %d", rc); + + skip_end(); + + rc = ok(side_effect == 0, "side_effect is %d", side_effect); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/skip/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/skip/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/skip/test.pl (revision 12167) @@ -0,0 +1,40 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 4; +diag("Returned: " . sprintf("%d", $rc)); + +my $side_effect = 0; # Check whether skipping has side effects + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +# Start skipping +SKIP: { + $rc = skip "Testing skipping", 1; + + $side_effect++; + + $rc = ok($side_effect == 1, '$side_effect checked out'); +} + +diag("Returned: $rc"); + +SKIP: { + $rc = skip "Testing skipping #2", 1; + diag("Returned: $rc"); + + $side_effect++; + + $rc = ok($side_effect == 1, '$side_effect checked out'); + diag("Returned: $rc"); +} + +$rc = ok($side_effect == 0, "side_effect is $side_effect"); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/skip/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/skip/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/skip/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/tap/tests/todo/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/todo/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/todo/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/tap/tests/todo/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/todo/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/todo/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psLib/test/tap/tests/todo/test.c =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/todo/test.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/todo/test.c (revision 12167) @@ -0,0 +1,68 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + unsigned int side_effect = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); /* Should always work */ + diag("Returned: %d", rc); + + todo_start("For testing purposes"); + + side_effect++; + + /* This test should fail */ + rc = ok(side_effect == 0, "side_effect checked out"); + diag("Returned: %d", rc); + + /* This test should unexpectedly succeed */ + rc = ok(side_effect == 1, "side_effect checked out"); + diag("Returned: %d", rc); + + todo_end(); + + todo_start("Testing printf() %s in todo_start()", "expansion"); + + rc = ok(0, "dummy test"); + diag("Returned: %d", rc); + + todo_end(); + + rc = ok(side_effect == 1, "side_effect is %d", side_effect); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/tap/tests/todo/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/todo/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/todo/test.pl (revision 12167) @@ -0,0 +1,41 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + +my $side_effect = 0; # Check whether TODO has side effects + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +# Start TODO tests +TODO: { + local $TODO = 'For testing purposes'; + + $side_effect++; + + # This test should fail + $rc = ok($side_effect == 0, 'side_effect checked out'); + diag("Returned: $rc"); + + # This test should unexpectedly succeed + $rc = ok($side_effect == 1, 'side_effect checked out'); + diag("Returned: $rc"); +} + +TODO: { + local $TODO = 'Testing printf() expansion in todo_start()'; + + $rc = ok(0, 'dummy test'); + diag("Returned: $rc"); +} + +$rc = ok($side_effect == 1, "side_effect is $side_effect"); +diag("Returned: $rc"); Index: /branches/rel-1-1/psLib/test/tap/tests/todo/test.t =================================================================== --- /branches/rel-1-1/psLib/test/tap/tests/todo/test.t (revision 12167) +++ /branches/rel-1-1/psLib/test/tap/tests/todo/test.t (revision 12167) @@ -0,0 +1,34 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +# Test:;More prints diagnostic from TODO tests on stdout +# http://rt.cpan.org/Ticket/Display.html?id=14982 +sed '/^#/D' test.pl.out > tmp +mv tmp test.pl.out + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psLib/test/test.pl =================================================================== --- /branches/rel-1-1/psLib/test/test.pl (revision 12167) +++ /branches/rel-1-1/psLib/test/test.pl (revision 12167) @@ -0,0 +1,31 @@ +#!/usr/bin/env perl + +# Copyright (C) 2006 Joshua Hoblitt +# +# $Id: test.pl,v 1.2 2006-09-12 20:27:07 jhoblitt Exp $ + +use strict; +use warnings FATAL => qw( all); + +use vars qw($VERSION); +$VERSION = '0.01'; + +use File::Find::Rule; +use Cwd; + +my $rule = File::Find::Rule->new; +# ignore .lib directories +$rule->or($rule->new + ->directory + ->name('.libs') + ->prune + ->discard, + $rule->new + ); +$rule->name(qr/^tap_[^.]*$/) + ->maxdepth(2) + ->relative; + +my @test_files = $rule->in(getcwd()); + +system("prove @test_files"); Index: /branches/rel-1-1/psLib/test/tst_template.c =================================================================== --- /branches/rel-1-1/psLib/test/tst_template.c (revision 12167) +++ /branches/rel-1-1/psLib/test/tst_template.c (revision 12167) @@ -0,0 +1,92 @@ +/** @file tst_psImageManip.c +* +* @brief Contains the tests for psImageManip.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-04-07 20:27:41 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 test1( void ); +static psS32 test2( void ); +static psS32 test3( void ); + +// test description consists of: +// * test function +// +// * testpoint number (item number in gforge testpoint log) +// +// * name of the testpoint +// +// * expected return value (negative numbers are signal types, e.g., +// -6 for aborts). Usually either -6 (psAbort called) or 0. +// +// * boolean to signify if the test function is already in list, i.e., if +// the test function covers multiple testpoints. If true, the line is +// ignored by runTestSuite if the user didn't explicitly specify the +// testpoint with the -n or -t option, as to not run a test function +// multiple times. +// +testDescription tests[] = { + { + test1, 1111, "psFunctionBar", 0, false + }, + { + test2, 1113, "psFunctionFoo", 0, false + }, + { + test3, 1114, "psFunctionFunk", 0, false + }, + + // testpoint #1112 handled by same test function as #1111 + { + test1, 1112, "psFunctionBang", 0, true + }, + + // A null terminates the testDescription list + { + NULL + } + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psImage", tests, argc, argv ) ); +} + +psS32 test1( void ) +{ + // no need to check for memory leaks, as the runTestSuite does that for you. + + // here is where one implements the tests for generally a single testpoint. + + return 0; // the value that indicates success is part of the testDescription +} + +psS32 test2( void ) +{ + // no need to check for memory leaks, as the runTestSuite does that for you. + + // here is where one implements the tests for generally a single testpoint. + + return 0; // the value that indicates success is part of the testDescription +} + +psS32 test3( void ) +{ + // no need to check for memory leaks, as the runTestSuite does that for you. + + // here is where one implements the tests for generally a single testpoint. + + return 0; // the value that indicates success is part of the testDescription +} + Index: /branches/rel-1-1/psLib/test/types/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/types/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/types/.cvsignore (revision 12167) @@ -0,0 +1,75 @@ +temp +.deps +.libs +Makefile +Makefile.in +header_1.fits +header_2.fits +mdcfgwrt.out +table10.dat +table2.dat +table3.dat +tableF32.dat +tableS32.dat +tableU8.dat +test.config +test1.config +test2.config +test3.config +test4.config +test5.config +tst_psArray +tst_psBitSet +tst_psHash00 +tst_psHash01 +tst_psHash02 +tst_psHash03 +tst_psHash04 +tst_psHash05 +tst_psList +tst_psLookupTable_01 +tst_psMetadataIO +tst_psMetadata_01 +tst_psMetadata_02 +tst_psMetadata_03 +tst_psMetadata_04 +tst_psMetadata_05 +tst_psMetadata_06 +tst_psMetadata_07 +tst_psPixels +MDCopy.in +MDCopy.out +tst_psArguments +mdcfgwrt.verified + +tap_psListIterator +tap_psMetadataIterator +tap_psMetadataConfigParse +tap_psMetadataConfigParse.config +*.bb +*.bbg +*.da +gmon.out + +tap_psArguments_all +tap_psArray_all +tap_psBitSet_all +tap_psHash_845 +tap_psHash_all +tap_psList_all +tap_psLookupTable_all +tap_psMetadataConfigFormat +tap_psMetadataConfigParse_time +tap_psMetadataConfigPrint +tap_psMetadataConfigRead +tap_psMetadataConfigWrite +tap_psMetadataConfig_input +tap_psMetadataConfig_output +tap_psMetadataItemCompare +tap_psMetadataItemParse +tap_psMetadata_copying +tap_psMetadata_creating +tap_psMetadata_manip +tap_psMetadata_polynomials +tap_psMetadata_printing +tap_psPixels_all Index: /branches/rel-1-1/psLib/test/types/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/types/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/types/Makefile.am (revision 12167) @@ -0,0 +1,108 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSLIB_LIBS) +AM_CFLAGS = -DXML_CONFIG_FILE="\"$(top_srcdir)/etc/pslib/psTime.xml\"" + +TEST_PROGS = \ + tap_psMetadataIterator \ + tap_psListIterator \ + tap_psMetadataConfigRead \ + tap_psMetadataConfigParse_time \ + tap_psMetadataItemCompare \ + tap_psMetadataItemParse \ + tap_psMetadata_printing \ + tap_psMetadata_copying \ + tap_psMetadata_creating \ + tap_psMetadata_manip \ + tap_psMetadata_polynomials \ + tap_psArray_all \ + tap_psArguments_all \ + tap_psPixels_all \ + tap_psHash_all \ + tap_psBitSet_all \ + tap_psList_all \ + tap_psLookupTable_all \ + tap_psMetadataConfigWrite \ + tap_psMetadataConfigPrint \ + tap_psMetadataConfigFormat \ + tap_psMetadataConfig_input \ + tap_psHash_845 + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +EXTRA_DIST = \ + data/header_1.fits \ + data/header_2.fits \ + data/mdcfgwrt.verified \ + data/test.config \ + data/test1.config \ + data/test2.config \ + data/test3.config \ + data/test4.config \ + data/test5.config + +tmp_files = \ + header_1.fits \ + header_2.fits \ + mdcfgwrt.verified \ + test.config \ + test1.config \ + test2.config \ + test3.config \ + test4.config \ + test5.config + +CLEANFILES = $(tmp_files) multi.fits table.fits temp/* MDCopy.in MDCopy.out mdcfgwrt.out \ + core core.* *~ *.bb *.bbg *.da gmon.out + +tests: $(check_PROGRAMS) + $(top_srcdir)/test/test.pl + +# XXX what is the point of verbatim copying these files? + +%.dat: verified/%.dat + cp $? $@ + +%.config: $(srcdir)/data/%.config + cp $? $@ + +#test.config: $(srcdir)/data/test.config +# cp $? $@ + +#test1.config: $(srcdir)/data/test1.config +# cp $? $@ + +#test2.config: $(srcdir)/data/test2.config +# cp $? $@ + +#test3.config: $(srcdir)/data/test3.config +# cp $? $@ + +#test4.config: $(srcdir)/data/test4.config +# cp $? $@ + +#test5.config: $(srcdir)/data/test5.config +# cp $? $@ + +#header_1.fits: $(srcdir)/data/header_1.fits +# cp $? $@ + +#header_2.fits: $(srcdir)/data/header_2.fits +# cp $? $@ + +mdcfgwrt.verified: $(srcdir)/data/mdcfgwrt.verified + cp $? $@ + +test: check Index: /branches/rel-1-1/psLib/test/types/data/header_1.fits =================================================================== --- /branches/rel-1-1/psLib/test/types/data/header_1.fits (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/header_1.fits (revision 12167) @@ -0,0 +1,1 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = 8 / number of bits per data pixel NAXIS = 0 / number of data axes HISTORY File modified by user 'harman' with fv on 2004-08-04T11:11:18 END Index: /branches/rel-1-1/psLib/test/types/data/header_2.fits =================================================================== --- /branches/rel-1-1/psLib/test/types/data/header_2.fits (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/header_2.fits (revision 12167) @@ -0,0 +1,1 @@ +SIMPLE = T / file does conform to FITS standard BITPIX = -64 / number of bits per data pixel NAXIS = 1 / number of data axes NAXIS1 = 64 / length of data axis 1 EXTEND = T / FITS dataset may contain extensions COMMENT FITS (Flexible Image Transport System) format is defined in 'AstronomyCOMMENT and Astrophysics', volume 376, page 359; bibcode: 2001A&A...376..359H END XTENSION= 'IMAGE ' / IMAGE extension BITPIX = -64 / number of bits per data pixel NAXIS = 1 / number of data axes NAXIS1 = 64 / length of data axis 1 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 BITPIX = -64 / number of bits per data pixel EXTNAME = 'MY_DATA_1' HISTORY File modified by user 'harman' with fv on 2004-08-04T13:14:45 HISTORY File modified by user 'harman' with fv on 2004-08-04T13:15:29 HISTORY File modified by user 'harman' with fv on 2004-08-04T13:21:18 HISTORY File modified by user 'harman' with fv on 2004-08-04T13:21:46 END XTENSION= 'IMAGE ' / IMAGE extension BITPIX = -64 / number of bits per data pixel NAXIS = 1 / number of data axes NAXIS1 = 64 / length of data axis 1 PCOUNT = 0 / required keyword; must = 0 GCOUNT = 1 / required keyword; must = 1 EXTNAME = 'MY_DATA_2' HISTORY File modified by user 'harman' with fv on 2004-08-04T13:22:12 HISTORY File modified by user 'harman' with fv on 2004-08-04T13:22:52 END Index: /branches/rel-1-1/psLib/test/types/data/mdcfgwrt.verified =================================================================== --- /branches/rel-1-1/psLib/test/types/data/mdcfgwrt.verified (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/mdcfgwrt.verified (revision 12167) @@ -0,0 +1,18 @@ +item1 BOOL TRUE #I am a boolean +item2 S32 55 +item3 F32 3.14 +item4 F64 6.28 +item5 STR GNIRTS #I am a string +@vector6 S32 1 2 3 4 5 #I am a vector +time01 PS_TIME_TAI 1000, 25, T #I am time + +metadata7 METADATA + ITEM01 S32 666 + META NEW METADATA + @VECTORNEW S32 1 2 3 4 5 #Newest VECTOR + cell STR pStArRs #I am a p-Star + END #I AM Newest METADATA + ITEM02 F32 666.6 #I AM FLOAT + ITEM03 F64 666.666 #I AM DOUBLE +END #I am a metadata + Index: /branches/rel-1-1/psLib/test/types/data/test.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test.config (revision 12167) @@ -0,0 +1,128 @@ +########################################################################################################## +# test.config +# +# This is a sample metadata configuration file used to test the metadata configuration file parser. +# It tests both positive and negative cases as described in the comments below. +# +# author Ross Harman, MHPCC +# +# version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +# date $Date: 2005-07-13 02:47:01 $ +# +# Copyright 2004 Maui High Performance Computing Center, University of Hawaii +########################################################################################################## +# +# +# +########## Test 1 ########## +# Lines beginning with # are comments. The line below, as well as those above are comments. They should be ignored by the parser. +# I am a comment. +# +# +# +########## Test 2 ########## +# The line below is a comment that begins with some whitespace. It should be ignored by the parser. + # Another comment +# +# +# +########## Test 3 ########## +# The line below is completely blank except for a carriage return. It should be ignored by the parser. + +# +# +# +########## Test 4 ########## +# The line below consists of spaces and tabs (whitespace). It should be ignored by the parser. + +# +# +# +########## Test 5 ########## +# The line below consists of a variable name, type, value, and trailing comment. It should be read by the parser +pi F64 3.1415926535897932384626433832795029 # Definition of pi +# +# +# +########## Test 6 ########## +# The line below consists of a variable name, type, and value, but without a trailing comment. It should be read by the parser. +altitude S32 10000 +# +# +# +########## Test 7 ########## +# The lines below contain variations in name, type, value, trailing comment, and whitespace. They should all be read by the parser. + time F32 1234.5678 + myBool BOOL F # F, f, 0, T, t, 1 are also acceptable +title1 STR Hello world #This is a comment for the string value + title2 STRING Good bye world # STRING or STR may be used as the string type +# +# +# +########## Test 8 ########## +# The line below creates a vector. It should be read by the parser. +@primes S32 2, 3, 5, 7, 11, 13, 17 # These are prime numbers +# +# +# +########## Test 9 ########## +# The line below creates a vector with commas mixed with spaces in the values. It should be read by the parser. +@negatives S32 -1, -2 -3 -4, -5, -6, -7 +# +# +# +########## Test 10 ########## +# The lines below should create a folder node with children that are strings. They should be read by the parser. +comment *STR This +comment *STR is +comment *STR an +comment *STR ugly +comment *STR comment +comment *STR but +comment *STR still +comment *STR valid +# +# +# +########## Test 11 ########## +# The line below contains an incorrect value. It should produce an error. +xPosition F64 9876.54qqq32 +# +# +# +########## Test 12 ########## +# The line below contains no value. It should produce an error. +yPosition F64 +# +# +# +########## Test 13 ########## +# The line below contains no type. It should produce an error. +zPosition 99.999 +# +# +# +########## Test 14 ########## +# The line below contains two * characters. It should produce an error. +aPosition ** +# +# +# +########## Test 15 ########## +# The line below contains two @ characters. It should produce an error. +@@bPosition F64 22.33 +# +# +# +########## Test 16 ########## +# The line below contains a ~ character used for special processing. It should produce an error. +range F64 140.0 ~ +# +# +# +########## Test 17 ########## +# The variable name below is repeated. It should produce an error if the overwrite function argument is set to false. +# If overwrite is true, then the last name and value will be stored and there will be no error. +speed F32 55.55 +speed F32 66.66 + Index: /branches/rel-1-1/psLib/test/types/data/test1.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test1.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test1.config (revision 12167) @@ -0,0 +1,57 @@ +Double F64 1.23456789 # This is a comment +Float F32 0.98765#This is a comment too +String STR This is the string that forms the value #comment + + # This is a comment line and is to be ignored +boolean BOOL T # The value of 'boolean' is 'true' + +@primes U8 2,3 5 7,11,13 17 # These are prime numbers + +comment MULTI # The rest of this line is ignored, but 'comment' is set to be non-unique +comment STR This +comment STR is +comment STR a +comment STR non-unique +comment STR key +Float F64 1.23456 # This generates a warning, and, if 'overwrite' is 'false', is ignored + +boolean1 BOOL F # The value of 'boolean' is 'false' + +@negprimes S8 -2, -3, -5, -7,-11,-13,-17,-19 + +@vector1 U16 0, 1, 2, 4, 8 +@vector2 U32 0, 8, 16, 32, 64, 128 +@vector3 U64 0, 64, 256, + +@vector4 S16 -2 -1 0 1 2 +@vector5 S32 -4, -2, 0, 2, 4, 6 +@vector6 S64 -16, -4, 0, 4 16 36 64 + +@vector7 F32 -1.03, 1.04, -1.05, 1.06 +@vector8 F64 -2.22, 2.21 -2.20, 2.19, -2.18 + +TYPE CELL EXTNAME BIASSEC CHIP # +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 + +MYCELL MULTI +MYCELL METADATA + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 24 +END +MYCELL S32 123 # A number + +cell METADATA + foo METADATA + bar STR BAZ + ping STR PONG + END + + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 12 +END + Index: /branches/rel-1-1/psLib/test/types/data/test2.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test2.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test2.config (revision 12167) @@ -0,0 +1,44 @@ + # This should generate error message +boolean BOOL X # The value of 'boolean' is 'true' + +value1 S32 # No value + +# Invalid vector entries +@vector U8 +@vector1 U8 x,y,z +@vector2 +@vector3 F8 ,,, + +# Multiple MULTI definitions +comment MULTI +comment MULTI + +# Type CELL not defined +MYCELL CELL CCD00 BSEC-00 CHIP.00 + +# Invalid value entries +value1 F64 aabb +value2 S32 ccdd + +# Repeated vector character +@@vector4 U8 1 2 3 4 # + +# Invalid TYPE line +TYPE + +# Duplicate TYPE +TYPE CELL EXTNAME BIASSEC CHIP +TYPE CELL EXTNAME BIASSEC CHIP + +# END with no matching METADATA +END + +# Duplicate item names within metadata type specifier +TYPE NEWCELL VALUE1 VALUE1 # + +# Not enough values in specified type +OURCELL CELL CCD00 + +# Type with no item +TYPE NEWCELL1 + Index: /branches/rel-1-1/psLib/test/types/data/test3.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test3.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test3.config (revision 12167) @@ -0,0 +1,16 @@ +Double F64 1.23456789 # This is a comment +Float F32 0.98765#This is a comment too +String STR This is the string that forms the value #comment + + # This is a comment line and is to be ignored +boolean BOOL T # The value of 'boolean' is 'true' + +@primes U8 2,3 5 7,11,13 17 # These are prime numbers + +comment MULTI # The rest of this line is ignored, but 'comment' is set to be non-unique +comment STR This +comment STR is +comment STR a +comment STR non-unique +comment STR key +Float F64 1.23456 # This generates a warning, and, if 'overwrite' is 'false', is ignored Index: /branches/rel-1-1/psLib/test/types/data/test4.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test4.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test4.config (revision 12167) @@ -0,0 +1,161 @@ +# +# This file contains examples from SDR-14 appendix A +# +CELL1 METADATA + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 24 +END + +CELL2 METADATA + FOO METADATA + BAR STR BAZ + PING STR PONG + END + + EXTNAME STR CCD00 + BIASSEC STR BSEC-00 + CHIP STR CHIP.00 + NCELL S32 24 +END + +FOO1 METADATA + FOO2 METADATA + FOO3 METADATA + FOO4 METADATA + FOO5 METADATA + FOO6 METADATA + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG + END + BAR STR BAZ + PING STR PONG +END + +FOO2 METADATA + BAR STR BAZ + PING STR PONG + FOO3 METADATA + BAR STR BAZ + PING STR PONG + FOO4 METADATA + BAR STR BAZ + PING STR PONG + FOO5 METADATA + BAR STR BAZ + PING STR PONG + FOO6 METADATA + BAR STR BAZ + PING STR PONG + FOO7 METADATA + BAR STR BAZ + PING STR PONG + END + END + END + END + END +END + +FOO3 METADATA + BAR STR BAZ + FOO4 METADATA + BAR STR BAZ + FOO5 METADATA + BAR STR BAZ + FOO6 METADATA + BAR STR BAZ + FOO7 METADATA + BAR STR BAZ + FOO8 METADATA + BAR STR BAZ + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG + END + PING STR PONG +END + +FOO4 METADATA + FOO5 METADATA + BAR STR BAZ + PING STR PONG + END + FOO6 METADATA + BAR STR BAZ + PING STR PONG + END +END + +TYPE CELL EXTNAME BIASSEC CHIP +CELL.00 CELL CCD00 BSEC-00 CHIP.00 +CELL.01 CELL CCD01 BSEC-01 CHIP.00 +FOO5 METADATA + TYPE CELL EXTNAME BIASSEC + CELL.00 CELL CCD00 BSEC-00 + CELL.01 CELL CCD01 BSEC-01 + FOO6 METADATA + TYPE CELL EXTNAME + CELL.00 CELL CCD00 + CELL.01 CELL CCD01 + END +END + +foo MULTI +foo S32 -1 +foo STR bar baz +foo BOOL T + +foo1 MULTI # foo +foo1 S32 -1 # bar +foo1 STR bar baz # baz +foo1 BOOL T # + +foo2 MULTI +foo2 S32 -1 +foo2 STR bar baz +foo2 BOOL T +bar1 METADATA + foo MULTI + foo S32 -1 + foo STR bar baz + foo BOOL T +END + +foo3 MULTI +foo3 METADATA + bar BOOL T +END +foo3 METADATA + bar BOOL T +END + +foo4 MULTI +TYPE bar a b c +foo4 bar x y z +foo4 bar x y z + +TYPE bar1 a b c +foo5 MULTI +foo5 bar1 x y z +foo5 bar1 x y z + Index: /branches/rel-1-1/psLib/test/types/data/test5.config =================================================================== --- /branches/rel-1-1/psLib/test/types/data/test5.config (revision 12167) +++ /branches/rel-1-1/psLib/test/types/data/test5.config (revision 12167) @@ -0,0 +1,32 @@ +# +# Examples from SDR-14 Appendix A which cause failures +# +TYPE CELL1 EXTNAME BIASSEC CHIP +FOO1 METADATA + CELL.00 CELL CCD00 BSEC-00 CHIP.00 +END + +FOO2 METADATA + TYPE CELL2 EXTNAME BIASSEC CHIP +END +CELL.00 CELL2 CCD00 BSEC-00 CHIP.00 + +FOO3 METADATA + TYPE CELL3 EXTNAME BIASSEC CHIP +END +BAR METADATA + CELL.00 CELL3 CCD00 BSEC-00 CHIP.00 +END + +TYPE CELL4 EXTNAME BIASSEC CHIP +CELL.00 CELL4 CCD00 BSEC-00 +CELL.01 CELL4 CCD01 BSEC-01 CHIP.00 + +TYPE CELL5 EXTNAME BIASSEC CHIP +TYPE CELL5 EXTNAME BIASSEC CHIP +CELL.02 CELL5 CCD00 BSEC-00 CHIP.00 +CELL.03 CELL5 CCD01 BSEC-01 CHIP.00 + +CELL.04 CELL6 CCD00 BSEC-00 CHIP.00 +CELL.05 CELL6 CCD01 BSEC-01 CHIP.00 + Index: /branches/rel-1-1/psLib/test/types/execute_tap =================================================================== --- /branches/rel-1-1/psLib/test/types/execute_tap (revision 12167) +++ /branches/rel-1-1/psLib/test/types/execute_tap (revision 12167) @@ -0,0 +1,21 @@ +make test +./tap_psArray_all +./tap_psListIterator +./tap_psMetadataConfigParse_time +./tap_psMetadataConfigRead +./tap_psMetadata_copying +./tap_psMetadata_creating +./tap_psMetadataItemCompare +./tap_psMetadataItemParse +./tap_psMetadataIterator +./tap_psMetadata_manip +./tap_psMetadata_printing +./tap_psMetadata_polynomials +./tap_psArguments_all +./tap_psPixels_all +./tap_psHash_all +./tap_psBitSet_all +./tap_psList_all +./tap_psLookupTable_all +./tap_psMetadataConfig_output +./tap_psMetadataConfig_input Index: /branches/rel-1-1/psLib/test/types/metaconf.in =================================================================== --- /branches/rel-1-1/psLib/test/types/metaconf.in (revision 12167) +++ /branches/rel-1-1/psLib/test/types/metaconf.in (revision 12167) @@ -0,0 +1,85 @@ +item1 BOOL T # I am a boolean +item1 BOOL F # I am a boolean2 +item2 S32 55 # I am int +item3 F32 3.14 +item4 F64 6.28 # I am float +item4-1 F64 6.28 1 # I am float +item5 STR GNIRTS # I am a string +item6 S32 10 1 +item6-1 S32 ~ +item7 S64 555 +item7-1 S64 555 x +item8 S8 3 +item8 S8 5 +item8-1 S8 5 1 +itemu1 U16 2 +itemu1-1 U16 2 1 +itemu2 U32 55 +itemu2-1 U32 55 1 +itemu3-1 U8 1 2 +itemu3 U8 1 +itemu4 U64 1634 +itemu4-1 U64 1634 1 +item9 BOOL F # I am a boolean2 +item10 S16 16 +item10-1 S16 16 16 +@vector1 S8 1 2 3 4 5 # I am a vector +@vector1-1 S8 % # +@vector2 S16 1 2 3 4 5 +@vector3 S32 1 2 3 4 5 +@vector4 S64 1 2 3 4 5 +@vector5 U8 1 2 3 4 5 # I am a vector +@vector6 U16 1 2 3 4 5 +@vector7 U32 1 2 3 4 5 +@vector8 U64 1 1 +@vector9 F32 1.0 2.3 3.1 4.5 5.0 # I am a vector +@vector10 F64 1.0 2.0 3.0 4.0 5.0 +@vector11 C64 1.0 2.0 3.0 4.0 5.0 +@@@vector12 F64 1.0 2.0 3.0 4.0 5.0 +time01 TT 1970-01-01T00:16:39Z # I am time +time02 UTC NULL # I am time2 + +ps1 S32 NAN + +f32 MULTI +f32 S32 666 # f32_1 +f32 S32 665 # f32_2 +f32 MULTI + +f32 METADATA + newi S32 151 +END + +metanew MULTI +meta1 METADATA + itemS32 S32 666 # f32_1 +END +meta1 METADATA + M2 S32 666 +END + +metadata7 METADATA + ITEM01 S32 666 + META_NEW METADATA + @VECTORNEW S32 1 2 3 4 5 # Newest VECTOR + cell STR pStArRs # I am a p-Star + END # I am a metadata + ITEM02 F32 666.6 # I AM FLOAT + ITEM03 F64 666.666 # I AM DOUBLE +END + + TYPE C32 3 + TYPE C32 3 + TYPE PS_TYPE_C32 2 # +newC32 C32 7i+5 +newC32 PS_TYPE_C32 7i+5 +#item11 C32 16+2i # I am Complex + +TYPE PS_TYPE_DD D +newDD PS_TYPE_DD +DD2 PS_TYPE_DD "" + +TYPE 1 +TYPE +TYPE # # 1 +\n Index: /branches/rel-1-1/psLib/test/types/table.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/table.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/table.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + 1.009 4 8 16 -1 -4 -8 -16 0 -1.0 +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/table2.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/table2.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/table2.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 1 -8 5 -1.5 + 1e-20 4 8 16 -1 -4 1 -16 0 -1.0 +2e-20 6 12 24 -2 -6 1 -24 5 -0.25 +3500.67 8 16 32 -3 -8 1 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/table3.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/table3.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/table3.dat (revision 12167) @@ -0,0 +1,8 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + 1.009 4 8 16 -1 -4 -8 -16 0 -1.0 +23.45 6 + +# Index: /branches/rel-1-1/psLib/test/types/tableF32_err.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/tableF32_err.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tableF32_err.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + k.009 4 8 16 -1 -4 -8 -16 0 -1.0 +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/tableF64_err.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/tableF64_err.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tableF64_err.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 # + 1.009 4 8 16 -1 -4 -8 -16 0 -1.k +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/tableS32_err.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/tableS32_err.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tableS32_err.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + 1.009 4 8 16 -1 -4 -k8 -16 0 -1.0 +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/tableS64_err.dat =================================================================== --- /branches/rel-1-1/psLib/test/types/tableS64_err.dat (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tableS64_err.dat (revision 12167) @@ -0,0 +1,9 @@ +# Table with valid types and index-values +# +#psF32 psU16 psU32 psU64 psS8 psS16 psS32 psS64 psU8 psF64 +-10.05 2 4 8 0 -2 -4 -8 5 -1.5 + 1.009 4 8 16 -1 -4 -8 -k6 0 -1.0 +23.45 6 12 24 -2 -6 -12 -24 5 -0.25 +3500.67 8 16 32 -3 -8 -16 -32 75 1.75 + +# Index: /branches/rel-1-1/psLib/test/types/tap_psArguments_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psArguments_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psArguments_all.c (revision 12167) @@ -0,0 +1,433 @@ +/** + * C Implementation: tap_psArguments_all + * + * Description: Tests for psArgumentVerbosity, psArgumentGet, psArgumentRemove, + * psArgumentParse, psArgumentHelp, psLogArguments, psTraceArguments + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + +void testArgumentGetParse(void); +void testArgumentVerbosity(void); +//void testLogTraceArguments(void); + +int main(void) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(27); + + note("Tests for psArguments Functions"); + + testArgumentGetParse(); + testArgumentVerbosity(); + // testLogTraceArguments(); + + done(); +} + +void testArgumentGetParse(void) +{ + note(" >>>Test 1: psArgument Get, Remove, Parse, and Help Fxns"); + psMetadata *arg = NULL; + char *argv[25]; + argv[0] = "./program"; + argv[1] = "-string"; + argv[2] = "new"; + argv[3] = "-float"; + argv[4] = "6.66"; + argv[5] = "-double"; + argv[6] = "0.666"; + argv[7] = "-int"; + argv[8] = "8"; + argv[9] = "-int"; + argv[10] = "16"; + argv[11] = "-int"; + argv[12] = "32"; + argv[13] = "-int"; + argv[14] = "64"; + argv[15] = "-U8"; + argv[16] = "1"; + argv[17] = "-U16"; + argv[18] = "666"; + argv[19] = "-U32"; + argv[20] = "666"; + argv[21] = "-Bool"; + argv[22] = "true"; + argv[23] = "-int"; + // argv[24] = "32"; + argv[24] = "-vvv"; + int argc = 25; + + //Try to get an argument's position + int i = psArgumentGet(argc, argv, "-float"); + { + ok( i == 3, + "psArgumentGet: return correct location of input argument."); + } + //Return 0 for attempting to get from a NULL input argument. + { + ok( psArgumentGet(argc, NULL, "-float") == 0, + "psArgumentGet: return 0 for a NULL input argument."); + } + //Return 0 for attempting to find a NULL string + { + ok( psArgumentGet(argc, argv, NULL) == 0, + "psArgumentGet: return 0 for a NULL input string."); + } + //Return 0 for attempting to find an empty string + { + ok( psArgumentGet(argc, argv, "") == 0, + "psArgumentGet: return 0 for an empty input string."); + } + //Return 0 for attempting to get an argument that doesn't match + { + ok( psArgumentGet(argc, argv, "-xxx") == 0, + "psArgumentGet: return 0 for an empty input string."); + } + //Return false for attempting to remove argnum = 0 + { + ok( !psArgumentRemove(0, &argc, argv), + "psArgumentRemove: return false for argnum = 0."); + } + //Return false for attempting to remove NULL argc + { + ok( !psArgumentRemove(0, NULL, argv), + "psArgumentRemove: return false for NULL argc."); + } + + //Setup the argument list for comparison + psMetadata *args = psMetadataAlloc(); + psMetadataAdd(args, PS_LIST_TAIL, "-string", PS_DATA_STRING, "Test String", "SomeString"); + psMetadataAdd(args, PS_LIST_TAIL, "-float", PS_DATA_F32, "Test Float", 0.666); + psMetadataAdd(args, PS_LIST_TAIL, "-double", PS_DATA_F64, "Test Double", 0.666); + psMetadata *ints = psMetadataAlloc(); + psMetadataAdd(ints, PS_LIST_TAIL, "int1", PS_DATA_S8, "Int1", 8); + psMetadataAdd(ints, PS_LIST_TAIL, "int2", PS_DATA_S16, "Int2", 16); + psMetadataAdd(ints, PS_LIST_TAIL, "int3", PS_DATA_S32, "Int3", 32); + psMetadataAdd(ints, PS_LIST_TAIL, "int4", PS_DATA_S64, "Int4", 64); + psMetadataAdd(args, PS_LIST_TAIL, "-int", PS_DATA_METADATA, "Integers", ints); + psFree(ints); // Drop reference + psMetadataAddS32(args, PS_LIST_TAIL, "-multi", 0, "666", 2); + psMetadataAddS32(args, PS_LIST_TAIL, "-multi", PS_META_DUPLICATE_OK, "hello kitty", 1); + + psMetadataAddU8(args, PS_LIST_TAIL, "-U8", 0, "U8", 1); + psMetadataAddU16(args, PS_LIST_TAIL, "-U16", 0, "U16", 666); + psMetadataAddU32(args, PS_LIST_TAIL, "-U32", 0, "U32", 666); + psMetadataAddU64(args, PS_LIST_TAIL, "-U64", 0, "U64", 666); + psMetadataAddBool(args, PS_LIST_TAIL, "-Bool", 0, "boolean", true); + psMetadataAddBool(args, PS_LIST_TAIL, "-Bool2", 0, "boolean", false); + psSphere *sphere = psSphereAlloc(); + sphere->r = 6.66; + sphere->d = 666.666; + psMetadataAddPtr(args, PS_LIST_TAIL, "ptr", PS_DATA_SPHERE, "", sphere); + psFree(sphere); + + //psArgumentHelp test + //Do nothing for NULL input (exit gracefully) + psArgumentHelp(NULL); + //Print the Argument help for valid metadata + psArgumentHelp(args); + + //psArgumentParse tests + //Return false for NULL input arguments + { + ok( !psArgumentParse(NULL, &argc, argv), + "psArgumentParse: return false for NULL argument metadata input."); + } + //Return false for NULL input argc + { + ok( !psArgumentParse(args, NULL, argv), + "psArgumentParse: return false for NULL argc input."); + } + //Return false for NULL input argv + { + ok( !psArgumentParse(args, &argc, NULL), + "psArgumentParse: return false for NULL argv input."); + } + //Return false for argc = 0 + { + int tempc = 0; + ok( !psArgumentParse(args, &tempc, argv), + "psArgumentParse: return false for argc = 1 input."); + } + //Return false for string not found in metadata arguments + { + ok( !psArgumentParse(args, &argc, argv), + "psArgumentParse: return false for argv containing unspecified input."); + } + //Return true for valid case + { + psArgumentRemove(25, &argc, argv); + ok( psArgumentParse(args, &argc, argv), + "psArgumentParse: return true for valid inputs."); + } + //Return false for inconsistent argc in metadata + { + psMetadata *tempArg = psMetadataAlloc(); + psMetadata *mdtemp = psMetadataAlloc(); + psMetadataAdd(mdtemp, PS_LIST_TAIL, "int1", PS_DATA_S8, "Int1", 8); + psMetadataAdd(mdtemp, PS_LIST_TAIL, "int2", PS_DATA_S16, "Int2", 16); + psMetadataAdd(mdtemp, PS_LIST_TAIL, "int3", PS_DATA_S32, "Int3", 32); + psMetadataAdd(tempArg, PS_LIST_TAIL, "-int", PS_DATA_METADATA, "Integers", mdtemp); + psFree(mdtemp); + int argcc = 2; + char *argvv[2]; + argvv[0] = "./program"; + argvv[1] = "-string"; + ok( !psArgumentParse(tempArg, &argcc, argvv), + "psArgumentParse: return false for inconsistent argc."); + psFree(tempArg); + } + //Return false for argc = 1 + { + int argcc = 2; + char *argvv[2]; + argvv[0] = "./program"; + argvv[1] = "-string"; + ok( !psArgumentParse(args, &argcc, argvv), + "psArgumentParse: return false for incomplete string syntax."); + } + //Return true for an unfound MULTI match + { + int argcc = 3; + char *argvv[3]; + argvv[0] = "./program"; + argvv[1] = "-multi"; + argvv[2] = "2"; + ok( psArgumentParse(args, &argcc, argvv), + "psArgumentParse: return true for MULTI."); + } + + //Check for Memory leaks + { + psFree(args); + psFree(arg); + checkMem(); + } +} + +void testArgumentVerbosity(void) +{ + note(" >>>Test 2: psArgumentRemove & psArgumentVerbosity Fxns"); + + //Return 2 (default) for NULL input argument + { + int argc = 1; + ok( psArgumentVerbosity(&argc, NULL) == 2, + "psArgumentVerbosity: return 2 for NULL argument input."); + } + //Return 2 for NULL argc input + { + char *argv[1]; + argv[0] = "./program"; + ok( psArgumentVerbosity(NULL, argv) == 2, + "psArgumentVerbosity: return 2 for NULL argument input."); + } + //Return 3 for "-v" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-v"; + ok( psArgumentVerbosity(&argc, argv) == 3, + "psArgumentVerbosity: return 3 for '-v' argument input."); + } + //Return 4 for "-vv" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-vv"; + ok( psArgumentVerbosity(&argc, argv) == 4, + "psArgumentVerbosity: return 4 for '-vv' argument input."); + } + //Return 5 for "-vvv" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-vvv"; + ok( psArgumentVerbosity(&argc, argv) == 5, + "psArgumentVerbosity: return 5 for '-vvv' argument input."); + } + //Return 2 for "-logfmt" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-logfmt"; + ok( psArgumentVerbosity(&argc, argv) == 2, + "psArgumentVerbosity: return 2 for '-logfmt' argument input."); + } + //Return 2 for "-logfmt" option with "H" + { + int argc = 3; + char *argv[3]; + argv[0] = "./program"; + argv[1] = "-logfmt"; + argv[2] = "H"; + ok( psArgumentVerbosity(&argc, argv) == 2, + "psArgumentVerbosity: return 2 for '-logfmt H' argument inputs."); + } + //Return 2 for "-trace" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-trace"; + ok( psArgumentVerbosity(&argc, argv) == 2, + "psArgumentVerbosity: return 2 for '-trace' argument input."); + } + //Return 2 for "-trace 1 2" option + { + int argc = 4; + char *argv[4]; + argv[0] = "./program"; + argv[1] = "-trace"; + argv[2] = "1"; + argv[3] = "2"; + ok( psArgumentVerbosity(&argc, argv) == 2, + "psArgumentVerbosity: return 2 for '-trace 1 2' argument inputs."); + } + //Return 2 for "-trace-levels" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-trace-levels"; + ok( psArgumentVerbosity(&argc, argv) == 2, + "psArgumentVerbosity: return 2 for '-trace-levels' argument input."); + } + + //Check for Memory leaks + { + checkMem(); + } +} + +/* +void testLogTraceArguments(void) +{ + note(" >>>Test 3: psLogArguments & psTraceArguments Fxns"); + + //Return 2 (default) for NULL arguments input + { + int argc = 4; + ok( psLogArguments(&argc, NULL) == 2, + "psLogArguments: return 2 for NULL argument input."); + } + //Return 2 (default) for NULL argc input + { + char *argv[1]; + argv[0] = "./program"; + ok( psLogArguments(NULL, argv) == 2, + "psLogArguments: return 2 for NULL argc input."); + } + //Return 3 for "-v" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-v"; + ok( psLogArguments(&argc, argv) == 3, + "psLogArguments: return 3 for '-v' argument input."); + } + //Return 4 for "-vv" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-vv"; + ok( psLogArguments(&argc, argv) == 4, + "psLogArguments: return 4 for '-vv' argument input."); + } + //Return 5 for "-vvv" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-vvv"; + ok( psLogArguments(&argc, argv) == 5, + "psLogArguments: return 5 for '-vvv' argument input."); + } + //Return 2 for "-logfmt" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-logfmt"; + ok( psLogArguments(&argc, argv) == 2, + "psLogArguments: return 2 for '-logfmt' argument input."); + } + //Return 2 for "-logfmt" option with "H" + { + int argc = 3; + char *argv[3]; + argv[0] = "./program"; + argv[1] = "-logfmt"; + argv[2] = "H"; + ok( psLogArguments(&argc, argv) == 2, + "psLogArguments: return 2 for '-logfmt H' argument inputs."); + } + + + //psTraceArguments Tests + //Return 0 (default) for NULL arguments input + { + int argc = 4; + ok( psTraceArguments(&argc, NULL) == 0, + "psTraceArguments: return 0 for NULL argument input."); + } + //Return 0 (default) for NULL argc input + { + char *argv[1]; + argv[0] = "./program"; + ok( psTraceArguments(NULL, argv) == 0, + "psTraceArguments: return 0 for NULL argc input."); + } + //Return 0 for "-trace" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-trace"; + ok( psTraceArguments(&argc, argv) == 0, + "psTraceArguments: return 2 for '-trace' argument input."); + } + //Return 2 for "-trace 1 2" option + { + int argc = 4; + char *argv[4]; + argv[0] = "./program"; + argv[1] = "-trace"; + argv[2] = "1"; + argv[3] = "2"; + ok( psTraceArguments(&argc, argv) == 1, + "psTraceArguments: return 2 for '-trace 1 2' argument inputs."); + } + //Return 2 for "-trace-levels" option + { + int argc = 2; + char *argv[2]; + argv[0] = "./program"; + argv[1] = "-trace-levels"; + ok( psTraceArguments(&argc, argv) == 0, + "psTraceArguments: return 2 for '-trace-levels' argument input."); + } + + //Check for Memory leaks + { + checkMem(); + } +} +*/ Index: /branches/rel-1-1/psLib/test/types/tap_psArray_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psArray_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psArray_all.c (revision 12167) @@ -0,0 +1,335 @@ +/** + * C Implementation: tap_psArray_creating + * + * Description: Tests for psArrayAlloc, psArrayRealloc, psMemCheckArray, + * psArrayElementsFree, psArrayLength + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + +void testArrayAllocs(void); +void testArrayAddRemove(void); +void testArraySetGet(void); +void testArraySort(void); + +int main(void) +{ + plan_tests(29); + + note("Tests for psArray Functions"); + + testArrayAllocs(); + testArrayAddRemove( ); + testArraySetGet( ); + testArraySort(); + + done(); +} + +void testArrayAllocs(void) +{ + note(" >>>Test 1: psArrayAlloc, Realloc, & Free Fxns"); + psArray *a = NULL; + + //Tests for psArrayAlloc + //Return NULL on attempting to allocate a negative size array + { + a = psArrayAlloc(-2); + ok( a == NULL, + "psArrayAlloc: return NULL for negative array-size input."); + } + //Return NULL for negative array size - psArrayAllocEmpty + { + a = psArrayAllocEmpty(-2); + ok( a == NULL, + "psArrayAllocEmpty: return NULL for negative array-size input."); + } + //Return properly allocated psArray + { + a = psArrayAlloc(0); + ok( a != NULL && psMemCheckArray(a), + "psArrayAlloc: return properly allocated psArray."); + } + + //Tests for psMemCheckArray + //Make sure psMemCheckArray works correctly - return false + { + int j = 2; + ok( !psMemCheckArray(&j), + "psMemCheckArray: return false for non-Array input."); + } + //Tests for psArrayRealloc + //Now try to reallocate the psArray - bigger + { + a = psArrayRealloc(a, 2); + ok ( psArrayLength(a) == 0 && a->nalloc == 2, + "psArrayRealloc: return properly reallocated psArray."); + } + //Return NULL when trying to reallocate a NULL psArray + { + psArray *temp = NULL; + temp = psArrayRealloc(temp, 1); + ok( temp == NULL, + "psArrayRealloc: return NULL for NULL input psArray."); + } + //Attempt to reallocate the psArray - smaller + { + psS32 *s32 = (psS32*)psAlloc(sizeof(psS32)); + *s32 = 1; + psS32 *s32_2 = (psS32*)psAlloc(sizeof(psS32)); + *s32_2 = 2; + skip_start( !psArraySet(a, 0, s32) || !psArraySet(a, 1, s32), 1, + "Skipping 1 tests because psArraySet failed"); + a = psArrayRealloc(a, 1); + *s32_2 = *((psS32*)(a->data[0])); + ok( a->n == 1 && a->nalloc == 1 && *s32_2 == 1, + "psArrayRealloc: return properly reallocated psArray."); + skip_end(); + psFree(s32); + psFree(s32_2); + } + //Attempt to reallocate the psArray to negative size + { + a = psArrayRealloc(a, -1); + psS32 *s32 = (psS32*)psAlloc(sizeof(psS32)); + *s32 = 2; + *s32 = *((psS32*)(a->data[0])); + ok( a->n == 1 && a->nalloc == 1 && *s32 == 1, + "psArrayRealloc: return same psArray for negative-size input."); + psFree(s32); + } + + //Attempt to free a NULL psArray + psArrayElementsFree(NULL); + //Check the length of a NULL array + { + psArray *emptyArray = NULL; + ok( psArrayLength(emptyArray) == -1, + "psArrayLength: return -1 for NULL input psArray."); + } + + //Check for Memory leaks + { + psFree(a); + checkMem(); + } +} + +void testArrayAddRemove(void) +{ + note(" >>>Test 2: psArrayAdd & psArrayRemove Fxns"); + psArray *a = psArrayAlloc(0); + psS32 *s1 = (psS32*)psAlloc(sizeof(psS32)); + *s1 = 2; + psS32 *s2 = (psS32*)psAlloc(sizeof(psS32)); + psS32 *s3 = (psS32*)psAlloc(sizeof(psS32)); + + //Tests for psArrayAdd + //Attempt to add element to NULL psArray. + { + psArray *temp = NULL; + temp = psArrayAdd(temp, 1, (psPtr)s1); + *s3 = *((psS32*)(temp->data[0])); + ok( temp->n == 1 && temp->nalloc == 1 && *s3 == 2, + "psArrayAdd: return array with newly added data."); + psFree(temp); + } + //Attempt to add an element to empty array. + { + a = psArrayAdd(a, 1, (psPtr)s1); + *s2 = 666; + *s3 = 212; + a = psArrayAdd(a, 1, s2); + a = psArrayAdd(a, 1, s3); + *s2 = *((psS32*)(a->data[0])); + ok ( a->n == 3 && a->nalloc == 3 && *s2 == 2, + "psArrayAdd: return array with newly added data."); + } + + //Tests for psArrayRemoveData + //Setup array with 3 elements to test remove function + //Return false for attempting to remove from a NULL array + { + psArray *temp = NULL; + ok( !psArrayRemoveData(temp, s2), + "psArrayRemoveData: return false for NULL input psArray."); + } + //Return true for successful removal + { + ok( psArrayRemoveData(a, s2) && a->n == 2, + "psArrayRemoveData: return true for successful removal."); + } + + //Tests for psArrayRemoveIndex + //Return false for NULL array input + { + ok( !psArrayRemoveIndex(NULL, 0), + "psArrayRemoveIndex: return false for NULL input psArray."); + } + //Return false for out-of-range index + { + ok( !psArrayRemoveIndex(a, 5), + "psArrayRemoveIndex: return false for out-of-range location."); + } + //Return true for successful removal + { + ok( psArrayRemoveIndex(a, 1) && a->n == 1, + "psArrayRemoveIndex: return true for successful removal."); + } + + //Check for Memory leaks + { + psFree(s1); + psFree(s2); + psFree(s3); + psFree(a); + checkMem(); + } + +} + +void testArraySetGet(void) +{ + note(" >>>Test 3: psArraySet & psArrayGet Fxns"); + psArray *a = NULL; + psArray *b = NULL; + psS32 *s1 = (psS32*)psAlloc(sizeof(psS32)); + *s1 = 2; + psS32 *s2 = (psS32*)psAlloc(sizeof(psS32)); + *s2 = 1; + psS32 *s3 = (psS32*)psAlloc(sizeof(psS32)); + *s3 = 3; + + //Tests for psArraySet + //Return false for trying to set a NULL psArray + { + ok( !psArraySet(a, 0, (psPtr)s1), + "psArraySet: return false for NULL input psArray."); + } + //Return false for trying to set an invalid position + a = psArrayAlloc(1); + { + ok( !psArraySet(a, 2, (psPtr)s1), + "psArraySet: return false for invalid input position."); + } + //Return false for trying to set nalloc position + psArraySet(a, 0, (psPtr)s1); + { + ok( !psArraySet(a, a->nalloc, (psPtr)s2), + "psArraySet: return false for out-of-range position."); + } + //Return false for an invalid position (-2 = out-of-range neg. index) + { + ok( !psArraySet(a, -2, (psPtr)s2), + "psArraySet: return false for out-of-range negative position."); + } + //Return true for set to a->n position (< nalloc) + a = psArrayRealloc(a, 10); + { + ok( psArraySet(a, a->n, (psPtr)s2) && a->n == 2, + "psArraySet: return true for valid input position."); + } + //Return true for a negative index input + { + ok( psArraySet(a, -2, (psPtr)s3) && a->n == 2 && + *((psS32*)(a->data[0])) == 3, + "psArraySet: return true for valid negative input position."); + } + + //Tests for psArrayGet + //Return NULL for NULL array input + psS32 *s4 = NULL; + { + s4 = (psS32*)psArrayGet(b, 0); + ok( s4 == NULL, + "psArrayGet: return NULL for NULL input psArray."); + } + //Return NULL for an out-of-range index + { + s4 = (psS32*)psArrayGet(a, a->n); + ok( s4 == NULL, + "psArrayGet: return NULL for out-of-range position."); + } + //Return NULL for an out-of-range negative index + { + s4 = (psS32*)psArrayGet(a, -1-a->n); + ok( s4 == NULL, + "psArrayGet: return NULL for out-of-range negative position."); + } + //Return valid case + { + s4 = (psS32*)psArrayGet(a, 1); + ok( *s4 == 1, + "psArrayGet: return correct value for valid position."); + } + + //Check for Memory leaks + { + psFree(a); + psFree(s1); + psFree(s2); + psFree(s3); + checkMem(); + } +} + +void testArraySort(void) +{ + note(" >>>Test 4: psArray Sort Function"); + psArray *a = NULL; + a = psArrayAlloc(3); + a->n = 0; + psS32 *s1 = (psS32*)psAlloc(sizeof(psS32)); + *s1 = 2; + psS32 *s2 = (psS32*)psAlloc(sizeof(psS32)); + *s2 = 1; + psS32 *s3 = (psS32*)psAlloc(sizeof(psS32)); + *s3 = 3; + psArraySet(a, a->n, (psPtr)s1); + psArraySet(a, a->n, (psPtr)s2); + psArraySet(a, a->n, (psPtr)s3); + psS32 *s4 = (psS32*)psAlloc(sizeof(psS32)); + psS32 *s5 = (psS32*)psAlloc(sizeof(psS32)); + psS32 *s6 = (psS32*)psAlloc(sizeof(psS32)); + + //Tests for psArraySort + //Return NULL for attempt to sort NULL psArray input. + { + psArray *temp = NULL; + temp = psArraySort(temp, (psComparePtrFunc)psCompareDescendingS32Ptr); + ok( temp == NULL, + "psArraySort: return NULL for NULL input psArray."); + } + //Return properly sorted psArray with descending psS32 elements - 3,2,1 + { + a = psArraySort(a, (psComparePtrFunc)psCompareDescendingS32Ptr); + *s4 = *((psS32*)(a->data[0])); + *s5 = *((psS32*)(a->data[1])); + *s6 = *((psS32*)(a->data[2])); + ok( *s4 == 3 && *s5 == 2 && *s6 == 1, + "psArraySort: return properly sorted psArray."); + } + + //Check for Memory leaks + { + psFree(s1); + psFree(s2); + psFree(s3); + psFree(s4); + psFree(s5); + psFree(s6); + psFree(a); + checkMem(); + } + +} + Index: /branches/rel-1-1/psLib/test/types/tap_psBitSet_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psBitSet_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psBitSet_all.c (revision 12167) @@ -0,0 +1,291 @@ +/** + * C Implementation: tap_psBitSet_all + * + * Description: Tests for psBitSetAlloc, psBitSetSet, psMemCheckBitSet, psBitSetClear, + * psBitSetTest, psBitSetOp, psBitSetNot, psBitSetToString + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testBitSetBasics(void); +void testBitSetOps(void); + +int main(void) +{ + plan_tests(31); + + note("Tests for psBitSet Functions"); + + testBitSetBasics(); + testBitSetOps(); + + done(); +} + +void testBitSetBasics(void) +{ + note(" >>>Test 1: psBitSet Basic Fxns"); + + psBitSet *noBits = NULL; + psBitSet *bs = NULL; + + //Return NULL for attempt to Allocate BitSet of negative size. + { + noBits = psBitSetAlloc(-1); + ok( noBits == NULL, + "psBitSetAlloc: return NULL for negative BitSet-size input."); + } + //Return properly allocated 0-size psBitSet + { + bs = psBitSetAlloc(0); + ok( bs != NULL && psMemCheckBitSet(bs) && bs->n == 0, + "psBitSetAlloc: return properly allocated psBitSet."); + } + //Return properly allocated psBitSet + { + psFree(bs); + bs = psBitSetAlloc(8); + ok( bs != NULL && psMemCheckBitSet(bs) && bs->n == 1, + "psBitSetAlloc: return properly allocated psBitSet."); + } + //Make sure psMemCheckBitSet works correctly - return false + { + int j = 2; + ok( !psMemCheckBitSet(&j), + "psMemCheckBitSet: return false for non-BitSet input."); + } + + //BitSetSet Tests + //Return NULL for NULL input psBitSet + { + bool rc = psBitSetSet(noBits, 0); + ok( rc == true, + "psBitSetSet: return TRUE for NULL BitSet input."); + } + //Return input BitSet for negative bit input + { + bool rc = psBitSetSet(bs, -1); + ok( rc == true, + "psBitSetSet: return TRUE for negative bits input."); + noBits = NULL; + } + //Return input BitSet for out-of-range bits + { + bool rc = psBitSetSet(bs, 8); + ok( rc = true, + "psBitSetSet: return TRUE for out-of-range bits input."); + noBits = NULL; + } + //Return set BitSet for valid inputs + { + psBitSetSet(bs, 2); + ok( bs->bits[0] == 4, + "psBitSetSet: return properly set BitSet for valid inputs."); + } + + //BitSetClear Tests + //Return NULL for NULL input psBitSet + { + bool rc = psBitSetClear(noBits, 0); + ok( rc == false, + "psBitSetClear: return FALSE for NULL BitSet input."); + } + //Return input BitSet for negative bit input + { + bool rc = psBitSetClear(bs, -1); + ok( rc = true, + "psBitSetClear: return TRUE for negative bits input."); + noBits = NULL; + } + //Return input BitSet for out-of-range bits + { + bool rc = psBitSetClear(bs, 8); + ok( rc == true, + "psBitSetClear: return TRUE for out-of-range bits input."); + noBits = NULL; + } + //Return cleared BitSet for valid inputs + { + psBitSetClear(bs, 2); + ok( bs->bits[0] == 0, + "psBitSetClear: return properly cleared BitSet for valid inputs."); + } + + //BitSetTest Tests + //Return false for NULL input psBitSet + { + ok( !psBitSetTest(noBits, 0), + "psBitSetTest: return false for NULL BitSet input."); + } + //Return false for negative bit input + { + ok( !psBitSetTest(bs, -1), + "psBitSetTest: return false for negative bits input."); + } + //Return false for out-of-range bits + { + ok( !psBitSetTest(bs, 8), + "psBitSetTest: return false for out-of-range bits input."); + } + //Return false for non-matching bit in BitSet + { + ok( !psBitSetTest(bs, 2), + "psBitSetTest: return false for non-matching bit in BitSet."); + } + //Return false for non-matching bit in BitSet + { + psBitSetSet(bs, 2); + ok( psBitSetTest(bs, 2), + "psBitSetTest: return true for matching bit in BitSet."); + } + + + //Check for Memory leaks + { + psFree(bs); + checkMem(); + } +} + +void testBitSetOps(void) +{ + note(" >>>Test 2: psBitSet Operation Fxns"); + psBitSet *noBits = NULL; + psBitSet *bs = NULL; + bs = psBitSetAlloc(8); + psBitSetSet(bs, 2); // 0000 0100 == 4 + psBitSetSet(bs, 3); // 0000 1100 == 12 + psBitSetSet(bs, 4); // 0001 1100 == 28 + psBitSetSet(bs, 5); // 0011 1100 == 60 + psBitSetSet(bs, 6); // 0111 1100 == 124 + psBitSetSet(bs, 7); // 1111 1100 == 252 + psBitSet *out = NULL; + + //psBitSetNot Tests + //Return NULL for NULL BitSet input + { + out = psBitSetNot(out, noBits); + ok( out == NULL, + "psBitSetNot: return NULL for NULL BitSet input."); + } + //Return correct BitSet for valid BitSet input + { + out = psBitSetNot(out, bs); //bs = 1111 1100 so out should = 0000 0011 = 3 + ok( out->bits[0] == 3, + "psBitSetNot: return correct BitSet for valid BitSet input."); + } + + //psBitSetOp Tests out = psBitSetOp(out, bs1, "op", bs2); + //Return NULL for NULL BitSet input + { + psFree(out); + out = NULL; + out = psBitSetOp(out, noBits, "op", noBits); + ok( out == NULL, + "psBitSetOp: return NULL for NULL BitSet input."); + } + //Return NULL for NULL operator input + { + out = psBitSetOp(out, bs, NULL, noBits); + ok( out == NULL, + "psBitSetOp: return NULL for NULL operator input."); + } + //Return NULL for invalid operator input + { + out = psBitSetOp(out, bs, "XAND", noBits); + ok( out == NULL, + "psBitSetOp: return NULL for invalid operator input."); + } + //Return NULL for AND operator with NULL second BitSet input + { + out = psBitSetOp(out, bs, "AND", noBits); + ok( out == NULL, + "psBitSetOp: return NULL for AND operator with NULL second BitSet input."); + } + //Return NULL for AND operator with BitSet inputs of differing size. + psBitSet *bs2 = psBitSetAlloc(16); + { + out = psBitSetOp(out, bs, "AND", bs2); + ok( out == NULL, + "psBitSetOp: return NULL for AND operator with BitSet inputs of" + " differing size."); + } + psFree(bs); + bs = psBitSetAlloc(16); + psBitSetSet(bs, 1); // 0000 0010 == 2 + psBitSetSet(bs2, 2); // 0000 0100 == 4 + //Return correct psBitSet output for valid inputs with AND operator + { + out = psBitSetOp(out, bs, "AND", bs2); + ok( out->bits[0] == 0, + "psBitSetOp: return correct psBitSet output for valid inputs" + " with AND operator."); + } + //Return correct psBitSet output for valid inputs with OR operator + { + out = psBitSetOp(out, bs, "OR", bs2); + ok( out->bits[0] == 6, + "psBitSetOp: return correct psBitSet output for valid inputs" + " with OR operator."); + } + //Return correct psBitSet output for valid inputs with XOR operator + psBitSetSet(bs2, 1); // 0000 0110 == 6 + { + out = psBitSetOp(out, bs, "XOR", bs2); + ok( out->bits[0] == 4, + "psBitSetOp: return correct psBitSet output for valid inputs" + " with XOR operator."); + } + //Return correct psBitSet output for valid inputs with NOT operator + { + psFree(out); + out = psBitSetAlloc(0); + psBitSetSet(bs, 2); // 0000 0110 == 4 + psBitSetSet(bs, 3); // 0000 1110 == 12 + psBitSetSet(bs, 4); // 0001 1110 == 28 + psBitSetSet(bs, 5); // 0011 1110 == 60 + psBitSetSet(bs, 6); // 0111 1110 == 124 + psBitSetSet(bs, 7); // 1111 1110 == 252 + out = psBitSetOp(out, bs, "NOT", bs2); + ok( out->bits[0] == 1, + "psBitSetOp: return correct psBitSet output for valid inputs" + " with NOT operator."); + } + + //psBitSetToString Tests + //Return NULL for NULL BitSet input + psString bitStr = NULL; + { + bitStr = psBitSetToString(noBits); + ok( bitStr == NULL, + "psBitSetToString: return NULL for NULL BitSet input."); + } + //Return correct string for valid BitSet input + { + psFree(bs); + bs = psBitSetAlloc(8); + psBitSetSet(bs, 2); // 0000 0100 == 4 + bitStr = psBitSetToString(bs); + ok( !strncmp(bitStr, "00000100", 10), + "psBitSetToString: return correct string for valid BitSet input."); + } + + + //Check for Memory leaks + { + psFree(bitStr); + psFree(out); + psFree(bs); + psFree(bs2); + checkMem(); + } +} Index: /branches/rel-1-1/psLib/test/types/tap_psHash_845.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psHash_845.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psHash_845.c (revision 12167) @@ -0,0 +1,33 @@ +#include +#include "pslib.h" +#include "pstap.h" + +#define SIZE 128 + + +int main(int argc, char *argv[]) +{ + plan_tests(5); + + char *stuff1 = psAlloc(SIZE); // Stuff to put on hash + char *stuff2 = psAlloc(SIZE); // Stuff to put on hash + + psHash *hash = psHashAlloc(16); // Hash to test + ok(hash, "Hash allocated"); + + bool status1 = psHashAdd(hash, "stuff", stuff1); + ok(status1, "Added 1 to hash"); + psFree(stuff1); // Drop reference + + psMemId last = psMemGetId(); // Last memory I.D. + bool status2 = psHashAdd(hash, "stuff", stuff2); + ok(status2, "Added 2 to hash"); + psFree(stuff2); // Drop reference + + int numLeaks = psMemCheckLeaks(last, NULL, NULL, false); // Number of leaks + ok(numLeaks == 0, "No leaks."); + + psFree(hash); + + done(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psHash_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psHash_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psHash_all.c (revision 12167) @@ -0,0 +1,252 @@ +/** + * C Implementation: tap_psHash_all + * + * Description: Tests for psHashAlloc, psHashAdd, psMemCheckHash, psHashLookup, + * psHashRemove, psHashKeyList, psHashToArray + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testHashCreate(void); +void testHashManip(void); +void testHashConvert(void); + +int main(void) +{ + plan_tests(25); + + note("Tests for psHash Functions"); + + testHashCreate(); + testHashManip(); + testHashConvert(); + + done(); +} + +void testHashCreate(void) +{ + note(" >>>Test 1: psHash Creation Fxns"); + + psHash *h1 = NULL; + psHash *h2 = NULL; + + //Return NULL on attempting to allocate a negative size hash + { + h1 = psHashAlloc(-2); + ok( h1 == NULL, + "psHashAlloc: return NULL for negative array-size input."); + } + //Return properly allocated psHash of 0-length + { + h2 = psHashAlloc(0); + ok( h2 != NULL && psMemCheckHash(h2),//XXX: && h1->buckets == NULL, + "psHashAlloc: return properly allocated psHash."); + } + //Return properly allocated psHash + { + h1 = psHashAlloc(3); + ok( h1 != NULL && psMemCheckHash(h1) && h1->buckets != NULL, + "psHashAlloc: return properly allocated psHash."); + } + //Make sure psMemCheckHash works correctly - return false + { + int j = 2; + ok( !psMemCheckHash(&j), + "psMemCheckHash: return false for non-Hash input."); + } + //Allocate a hashBucket by inserting a psHash entry - return true + psMetadataItem *itemBool = psMetadataItemAllocBool("itemBool", "", true); + { + ok( psHashAdd(h1, "h1-1", (psPtr)itemBool), + "psHashAlloc: return properly allocated psHashBucket item."); + } + //Return false for trying to add to a NULL hash input + { + ok( !psHashAdd(NULL, "h1-2", (psPtr)itemBool), + "psHashAlloc: return false for trying to add to a NULL hash input."); + } + //Return false for trying to add data with NULL key + { + ok( !psHashAdd(h1, NULL, (psPtr)itemBool), + "psHashAlloc: return false for trying to add data with NULL key."); + } + //Return false for trying to add NULL data + { + ok( !psHashAdd(h1, "h1-2", NULL), + "psHashAlloc: return false for trying to add NULL data."); + } + //Return false for trying to add data to empty hash + { + ok( !psHashAdd(h2, "h1-2", (psPtr)itemBool), + "psHashAlloc: return false for trying to add data to empty table."); + } + //Return true for trying to add a duplicate hash entry - replaces + { + psHashAdd(h1, "h1-2", (psPtr)itemBool); + psHashAdd(h1, "h1-3", (psPtr)itemBool); + psHashAdd(h1, "h1-4", (psPtr)itemBool); + ok( psHashAdd(h1, "h1-3", (psPtr)itemBool), + "psHashAlloc: return true when adding duplicate data entry."); + } + + + //Check for Memory leaks + { + psFree(itemBool); + psFree(h1); + psFree(h2); + checkMem(); + } +} + +void testHashManip(void) +{ + note(" >>>Test 2: psHash Manipulation Fxns"); + + psHash *h1 = NULL; + h1 = psHashAlloc(2); + psMetadataItem *itemBool = psMetadataItemAllocBool("itemBool", "", true); + psMetadataItem *newBool = psMetadataItemAllocBool("newBool", "", true); + psHashAdd(h1, "h1-1", (psPtr)itemBool); + psHashAdd(h1, "h1-2", (psPtr)newBool); + psMetadataItem *data = NULL; + + //psHashLookup Tests + //Return NULL for NULL hash input + { + data = (psMetadataItem*)psHashLookup(NULL, "h1-1"); + ok( data == NULL, + "psHashLookup: return NULL for NULL hash input."); + } + //Return NULL for NULL key input + { + data = (psMetadataItem*)psHashLookup(h1, NULL); + ok( data == NULL, + "psHashLookup: return NULL for NULL key input."); + } + //Return NULL for no matching key + { + data = (psMetadataItem*)psHashLookup(h1, "h1-3"); + ok( data == NULL, + "psHashLookup: return NULL for invalid key input."); + } + //Return correct data for valid inputs + { + data = (psMetadataItem*)psHashLookup(h1, "h1-1"); + ok( data != NULL && psMemCheckMetadataItem(data) && data->data.B, + "psHashLookup: return correct data for valid inputs."); + } + + //psHashRemove Tests + //Return false for NULL hash input + { + ok( !psHashRemove(NULL, "h1-1"), + "psHashRemove: return false for NULL hash input."); + } + //Return false for NULL key input + { + ok( !psHashRemove(h1, NULL), + "psHashRemove: return false for NULL key input."); + } + //Return false for no matching key + { + ok( !psHashRemove(h1, "h1-3"), + "psHashRemove: return false for invalid key input."); + } + //Return true for properly removed hash entry + { + ok( psHashRemove(h1, "h1-1") && (psHashLookup(h1, "h1-1") == NULL), + "psHashRemove: return true for properly removed hash entry."); + } + + //Check for Memory leaks + { + psFree(h1); + psFree(itemBool); + psFree(newBool); + checkMem(); + } +} + +void testHashConvert(void) +{ + note(" >>>Test 3: psHash Conversion/List Fxns"); + + psHash *h1 = NULL; + h1 = psHashAlloc(2); + psHash *h2 = psHashAlloc(0); + psMetadataItem *itemBool = psMetadataItemAllocBool("itemBool", "", true); + psMetadataItem *newBool = psMetadataItemAllocBool("newBool", "", true); + psHashAdd(h1, "h1-1", (psPtr)itemBool); + psHashAdd(h1, "h1-2", (psPtr)newBool); + psList *newList = NULL; + psArray *newArr = NULL; + + //psHashKeyList Tests + //Return NULL for NULL hash input + { + newList = psHashKeyList(NULL); + ok( newList == NULL, + "psHashKeyList: return NULL for NULL hash input."); + } + //Return empty list for empty hash input + { + newList = psHashKeyList(h2); + ok( newList != NULL && newList->n == 0, + "psHashKeyList: return empty list for empty hash input."); + psFree(newList); + newList = NULL; + } + //Return correct list for valid, non-empty hash input + { + newList = psHashKeyList(h1); + ok( newList != NULL && !strncmp((char*)(newList->head->data), "h1-1", 10), + "psHashKeyList: return correct list for valid hash input."); + } + + //psHashToArray + //Return NULL for NULL hash input + { + newArr = psHashToArray(NULL); + ok( newArr == NULL, + "psHashToArray: return NULL for NULL hash input."); + } + //Return empty array for empty hash input + { + newArr = psHashToArray(h2); + ok( newArr != NULL && newArr->n == 0, + "psHashToArray: return empty array for empty hash input."); + psFree(newArr); + newArr = NULL; + } + //Return correct list for valid, non-empty hash input + { + newArr = psHashToArray(h1); + psMetadataItem *tempItem = (psMetadataItem*)psArrayGet(newArr, 0); + if (tempItem->type != PS_DATA_BOOL) + printf("\n not a bool - %s\n", tempItem->name); + ok( newArr != NULL,// && !strncmp(tempItem->name, "itemBool", 10), + "psHashToArray: return correct array for valid hash input."); + } + + //Check for Memory leaks + { + psFree(h1); + psFree(h2); + psFree(newList); + psFree(newArr); + psFree(itemBool); + psFree(newBool); + checkMem(); + } +} Index: /branches/rel-1-1/psLib/test/types/tap_psListIterator.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psListIterator.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psListIterator.c (revision 12167) @@ -0,0 +1,189 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define STRING1 "This is string #1" +#define STRING2 "String number 2" +#define STRING3 "3 number string" +#define STRING4 "four number string" +#define STRING5 "number five string" +#define STRING6 "#6 string" +#define STRING7 "#7 $7r!Ng" + + +// Generate a dummy list +static psList *listGenerate(void) +{ + psList *list = psListAlloc(NULL); + + // Generate the strings + psString string1 = psStringCopy(STRING1); + psString string2 = psStringCopy(STRING2); + psString string3 = psStringCopy(STRING3); + psString string4 = psStringCopy(STRING4); + psString string5 = psStringCopy(STRING5); + psString string6 = psStringCopy(STRING6); + psString string7 = psStringCopy(STRING7); + + // Add the strings to the list + psListAdd(list, PS_LIST_TAIL, string1); + psListAdd(list, PS_LIST_TAIL, string2); + psListAdd(list, PS_LIST_TAIL, string3); + psListAdd(list, PS_LIST_TAIL, string4); + psListAdd(list, PS_LIST_TAIL, string5); + psListAdd(list, PS_LIST_TAIL, string6); + psListAdd(list, PS_LIST_TAIL, string7); + + // Drop references + psFree(string1); + psFree(string2); + psFree(string3); + psFree(string4); + psFree(string5); + psFree(string6); + psFree(string7); + + return list; +} + +// Function to perform iteration +typedef psString (*iterFunc)(psListIterator *iter); + + +// Test the iteration by iterating once and checking the name, comment, and data +static void testIteration(iterFunc function, // Function to use to iterate + psListIterator *iterator, // The iterator + const char *string // Expected string + ) +{ + psString output = function(iterator); + ok(output, "output = %x", output); + skip_start(!output, 1, "Skipping test because iteration failed"); + ok(strcmp(output, string) == 0, "output = %s", output); + skip_end(); + + return; +} + + +int main (void) +{ + plan_tests(66); + + note("psListIterator tests"); + + { + note("Forwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, PS_LIST_HEAD, false); + ok(iter, "iter = %x", iter); + skip_start(!iter, 14, "Skipping 14 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psListGetAndIncrement, iter, STRING1); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING2); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING3); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING4); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING5); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING6); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING7); + + skip_end(); + psFree(iter); + psFree(list); + } + + { + note("Backwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, PS_LIST_TAIL, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 14, "Skipping 14 tests because psListIteratorAlloc failed"); + + testIteration((iterFunc)psListGetAndDecrement, iter, STRING7); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING6); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING5); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING4); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING3); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING2); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING1); + + skip_end(); + psFree(iter); + psFree(list); + } + + { + note("Jumping in halfway through (using allocator), forwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, 3, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 8, "Skipping 8 tests because psListIteratorAlloc failed"); + + testIteration((iterFunc)psListGetAndIncrement, iter, STRING4); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING5); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING6); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING7); + + skip_end(); + psFree(iter); + psFree(list); + } + + { + note("Jumping in halfway through (using allocator), backwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, -4, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 8, "Skipping 8 tests because psListIteratorAlloc failed"); + + testIteration((iterFunc)psListGetAndDecrement, iter, STRING4); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING3); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING2); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING1); + + skip_end(); + psFree(iter); + psFree(list); + } + + { + note("Jumping in halfway through (using set), forwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, PS_LIST_HEAD, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 8, "Skipping 8 tests because psListIteratorAlloc failed"); + psListIteratorSet(iter, 3); + + testIteration((iterFunc)psListGetAndIncrement, iter, STRING4); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING5); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING6); + testIteration((iterFunc)psListGetAndIncrement, iter, STRING7); + + skip_end(); + psFree(iter); + psFree(list); + } + + { + note("Jumping in halfway through (using set), backwards"); + psList *list = listGenerate(); + psListIterator *iter = psListIteratorAlloc(list, PS_LIST_HEAD, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 8, "Skipping 8 tests because psListIteratorAlloc failed"); + psListIteratorSet(iter, -4); + + testIteration((iterFunc)psListGetAndDecrement, iter, STRING4); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING3); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING2); + testIteration((iterFunc)psListGetAndDecrement, iter, STRING1); + + skip_end(); + psFree(iter); + psFree(list); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psList_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psList_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psList_all.c (revision 12167) @@ -0,0 +1,530 @@ +/** + * C Implementation: tap_psList_all + * + * Description: Tests for psListAlloc, psListAdd, psMemCheckList, psListAddAfter, + * psListAddBefore, psListRemove, psListRemoveData, psListGet, + * psListIteratorAlloc, psListIteratorSet, psListGetAndIncrement, + * psListGetAndDecrement, psListToArray, psArrayToList, psListSort, + * psListLength + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testListCreate(void); +void testListManip(void); +void testListConvertSort(void); + +int main(void) +{ + plan_tests(60); + + note("Tests for psList Functions"); + + testListCreate(); + testListManip(); + testListConvertSort(); + + done(); +} + +void testListCreate(void) +{ + note(" >>>Test 1: psList Creation Fxns"); + psList *noList = NULL; + psListIterator *noIter = NULL; + psList *list = psListAlloc(NULL); + psMetadata *md = psMetadataAlloc(); + psListIterator *iter1 = NULL; + psListIterator *iter2 = NULL; + + //Tests for psListAlloc & psMemCheckList + //Return empty list for NULL data input. + { + noList = psListAlloc(NULL); + ok( psListLength(noList) == 0 && psMemCheckList(noList), + "psListAlloc: return empty list for NULL data input."); + } + //Return allocated list for non-NULL data input. + psFree(noList); + { + + noList = psListAlloc(md); + ok( psListLength(noList) == 1, + "psListAlloc: return correct list for non-NULL data input."); + } + //Make sure psMemCheckList works correctly - return false + { + int j = 2; + ok( !psMemCheckList(&j), + "psMemCheckList: return false for non-List input."); + } + + //Tests for ListIteratorAlloc + //Return NULL for attempt to allocate iterator with NULL list input + { + noIter = psListIteratorAlloc(NULL, 0, true); + ok( noIter == NULL, + "psListIteratorAlloc: return false for NULL data input."); + } + //Attempt to Allocate a psListIterator with out-of-range location + { + iter1 = psListIteratorAlloc(noList, 10, false); + ok( iter1 == NULL, + "psListIteratorAlloc: return NULL for out-of-range location."); + } + //Return valid iterator for valid inputs + { + iter1 = psListIteratorAlloc(noList, 0, true); + ok( iter1 != NULL, + "psListIteratorAlloc: return valid iterator for valid inputs."); + } + + //Tests For ListAdd Fxns + //Return false for NULL list input + { + ok( !psListAdd(NULL, 0, md), + "psListAdd: return false for NULL list input."); + } + //Return false for NULL data input + { + ok( !psListAdd(list, 0, NULL), + "psListAdd: return false for NULL data input."); + } + //Return false for list with NULL data + { + psFree(list->iterators->data[0]); + list->iterators->data[0] = NULL; + ok( !psListAdd(list, 0, md), + "psListAdd: return false for list with NULL iterators."); + psFree(list); + list = psListAlloc(md); + } + //Return true for valid inputs - tail location + { + ok( psListAdd(list, 2, md), + "psListAdd: return true for valid inputs - Tail Location."); + } + //Return true for valid inputs - head location + { + ok( psListAdd(list, 0, md), + "psListAdd: return true for valid inputs - head Location."); + } + + //psListAddAfter Tests + //psListAddAfter - Return false for NULL data input + { + ok( !psListAddAfter(iter1, NULL), + "psListAddAfter: return false for NULL data input."); + } + //psListAddAfter - Return false for NULL iterator input + { + ok( !psListAddAfter(NULL, md), + "psListAddAfter: return false for NULL iterator input."); + } + //psListAddAfter - Return false for non-mutable iterator input + { + iter1->mutable = false; + ok( !psListAddAfter(iter1, md), + "psListAddAfter: return false for non-mutable iterator input."); + iter1->mutable = true; + psFree(iter1); + } + //psListAddAfter - Return false for iterator with NULL cursor + psList *newList = psListAlloc(md); + iter1 = psListIteratorAlloc(newList, 0, true); + psListElem *cursor = iter1->cursor; + { + iter1->cursor = NULL; + ok( !psListAddAfter(iter1, md), + "psListAddAfter: return false for iterator with headptr but no cursor."); + iter1->cursor = cursor; + } + //Set the iterator to a middle element, then add after + { + iter2 = psListIteratorAlloc(list, 1, true); + ok( psListAddAfter(iter2, md), + "psListAddAfter: return true for adding a list element to the middle."); + } + //Set the iterator to the head element, then add after a wrong index. return true + { + if (!psListIteratorSet(iter2, PS_LIST_HEAD) ) + printf("\nerror in set\n\n"); + ((psListIterator*)(iter2->list->iterators->data[0]))->index = 10; + ok( psListAddAfter(iter2, md), + "psListAddAfter: return true for adding a list element to the head."); + } + //Return true for adding to an empty list + psFree(noList); + noList = psListAlloc(NULL); + psListIterator *iter3 = psListIteratorAlloc(noList, 0, true); + { + ok( psListAddAfter(iter3, md), + "psListAddAfter: return true for adding to an empty list."); + } + + //psListAddBefore Tests + //psListAddBefore - Return false for NULL data input + { + ok( !psListAddBefore(iter1, NULL), + "psListAddBefore: return false for NULL data input."); + } + //psListAddBefore - Return false for NULL iterator input + { + ok( !psListAddBefore(NULL, md), + "psListAddBefore: return false for NULL iterator input."); + } + //psListAddBefore - Return false for non-mutable iterator input + { + iter1->mutable = false; + ok( !psListAddBefore(iter1, md), + "psListAddBefore: return false for non-mutable iterator input."); + iter1->mutable = true; + } + { + cursor = iter1->cursor; + iter1->cursor = NULL; + ok( !psListAddBefore(iter1, md), + "psListAddBefore: return false for iterator with headptr but no cursor."); + iter1->cursor = cursor; + } + //Add before a middle list element + { + psListIteratorSet(iter2, -2); + ok( psListAddBefore(iter2, md), + "psListAddBefore: return true for adding a list element to the middle."); + } + //Set the iterator to the 2nd element, then add after a wrong index. return true + { + skip_start( !psListIteratorSet(iter2, 1), 1, + "Skipping 1 tests because psListIteratorSet failed"); + ((psListIterator*)(iter2->list->iterators->data[0]))->index = 10; + ok( psListAddBefore(iter2, md), + "psListAddBefore: return true for adding a list element to the head."); + skip_end(); + } + //Return true for adding to an empty list + { + psFree(noList); + noList = psListAlloc(NULL); + iter3 = psListIteratorAlloc(noList, 0, true); + psFree(iter3); + ok( psListAddBefore(iter3, md), + "psListAddBefore: return true for adding to an empty list."); + } + + //Check the length of a NULL list + { + psList *emptyList = NULL; + ok( psListLength(emptyList) == -1, + "psListLength: return -1 for NULL input psList."); + } + + //Check for Memory leaks + { + psFree(iter2); + psFree(list); + psFree(iter1); + psFree(newList); + psFree(md); + psFree(noList); + checkMem(); + } +} + +void testListManip(void) +{ + note(" >>>Test 2: psList Manipulation Fxns"); + psMetadata *md = psMetadataAlloc(); + psList *emptyList = psListAlloc(NULL); + psList *list = psListAlloc(md); + psSphere *sphere = psSphereAlloc(); + psCube *cube = psCubeAlloc(); + psArray *array = psArrayAlloc(0); + psListAdd(list, PS_LIST_TAIL, sphere); + psListAdd(list, PS_LIST_TAIL, cube); + psListAdd(list, PS_LIST_TAIL, array); + psListIterator *emptyIter = psListIteratorAlloc(emptyList, 0, true); + psListIterator *iter1 = psListIteratorAlloc(list, PS_LIST_TAIL, true); + + //Tests for psListGet + //Return NULL for NULL list input + { + psMetadata *out = NULL; + out = (psMetadata*)psListGet(NULL, PS_LIST_HEAD); + ok( out == NULL, + "psListGet: return NULL for NULL list input."); + } + //Return NULL for empty list + { + psMetadata *out = NULL; + out = (psMetadata*)psListGet(emptyList, PS_LIST_HEAD); + ok( out == NULL, + "psListGet: return NULL for empty list."); + } + //Return NULL for out-of-range location + { + psMetadata *out = NULL; + out = (psMetadata*)psListGet(list, -10); + ok( out == NULL, + "psListGet: return NULL for out-of-range location."); + } + //Return correct head item for valid inputs + { + psMetadata *out = NULL; + out = (psMetadata*)psListGet(list, PS_LIST_HEAD); + ok( out != NULL && psMemCheckMetadata(out), + "psListGet: return correct head item for valid inputs."); + } + + //Tests for psListGetAndIncrement + //Return NULL for NULL iterator input + { + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndIncrement(NULL); + ok( out == NULL, + "psListGetAndIncrement: return NULL for NULL iterator input."); + } + //Return NULL for empty iterator with offend = false + { + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndIncrement(emptyIter); + ok( out == NULL, + "psListGetAndIncrement: return NULL for empty iterator input."); + } + //Return NULL for empty iterator with offend = true + { + emptyIter->offEnd = true; + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndIncrement(emptyIter); + ok( out == NULL, + "psListGetAndIncrement: return NULL for empty iterator input."); + emptyIter->offEnd = false; + } + //Return correct tail item for valid inputs + { + psArray *out = NULL; + out = (psArray*)psListGetAndIncrement(iter1); + ok( out != NULL && psMemCheckArray(out), + "psListGetAndIncrement: return correct tail item for valid inputs."); + } + + //Tests for psListGetAndDecrement + //Return NULL for NULL iterator input + { + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndDecrement(NULL); + ok( out == NULL, + "psListGetAndDecrement: return NULL for NULL iterator input."); + } + //Return NULL for empty iterator with offend = false + { + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndDecrement(emptyIter); + ok( out == NULL, + "psListGetAndDecrement: return NULL for empty iterator input."); + } + //Return NULL for empty iterator with offend = true + { + emptyIter->offEnd = true; + psMetadata *out = NULL; + out = (psMetadata*)psListGetAndDecrement(emptyIter); + ok( out == NULL, + "psListGetAndDecrement: return NULL for empty iterator input."); + emptyIter->offEnd = false; + } + //Return correct tail item for valid inputs + { + psArray *out = NULL; + skip_start( !psListIteratorSet(iter1, PS_LIST_TAIL), 1, + "Skipping 1 tests because psListIteratorSet failed"); + out = (psArray*)psListGetAndDecrement(iter1); + ok( out != NULL && psMemCheckArray(out), + "psListGetAndDecrement: return correct tail item for valid inputs."); + skip_end(); + } + + //Tests for psListRemove + //Return false for NULL list input + { + ok( !psListRemove(NULL, PS_LIST_HEAD), + "psListRemove: return false for NULL list input."); + } + //Return false for invalid location + { + ok( !psListRemove(list, -10), + "psListRemove: return false for invalid location."); + } + //Return false for empty list + { + ok( !psListRemove(emptyList, PS_LIST_HEAD), + "psListRemove: return false for remove from empty list."); + } + //Return true for remove from middle of list + { + ok( psListRemove(list, 2) && list->n == 3, + "psListRemove: return true for remove from middle of list."); + } + //Return true for remove from head of list + { + ok( psListRemove(list, PS_LIST_HEAD) && list->n ==2, + "psListRemove: return true for remove from head of list."); + } + //Return true for remove from tail of list + { + ok( psListRemove(list, PS_LIST_TAIL) && list->n == 1, + "psListRemove: return true for remove from tail of list."); + } + //Tests for psListRemoveData + //Return false for NULL list input + { + ok( !psListRemoveData(NULL, md), + "psListRemoveData: return false for NULL list input."); + } + //Return false for NULL data input + { + ok( !psListRemoveData(list, NULL), + "psListRemoveData: return false for NULL data input."); + } + //Return false for non-matching data + { + ok( !psListRemoveData(list, md), + "psListRemoveData: return false for non-matching data."); + } + //Return false for trying to remove from an empty list + { + ok( !psListRemoveData(emptyList, md), + "psListRemoveData: return false for trying to remove from an empty list."); + } + //Return true for remove of valid data + psListAdd(list, PS_LIST_HEAD, cube); + psListAdd(list, PS_LIST_HEAD, array); + { + ok( psListRemoveData(list, sphere), + "psListRemoveData: return true for remove of valid data."); + } + + //Check for Memory leaks + { + psFree(md); + psFree(emptyList); + psFree(list); + psFree(sphere); + psFree(cube); + psFree(array); + checkMem(); + } +} + +void testListConvertSort(void) +{ + note(" >>>Test 3: psList Conversion and Sorting Fxns"); + psList *emptyList = psListAlloc(NULL); + psS32 *s1 = (psS32*)psAlloc(sizeof(psS32)); + *s1 = 2; + psS32 *s2 = (psS32*)psAlloc(sizeof(psS32)); + *s2 = 3; + psS32 *s3 = (psS32*)psAlloc(sizeof(psS32)); + *s3 = 1; + psList *list = psListAlloc(s1); + psListAdd(list, PS_LIST_TAIL, s2); + psListAdd(list, PS_LIST_TAIL, s3); + psArray *array = NULL; + psArray *emptyArray = psArrayAlloc(0); + psList *out = NULL; + + //Tests for psListToArray + //Return NULL for NULL list input + { + array = psListToArray(NULL); + ok( array == NULL, + "psListToArray: return NULL for NULL list input."); + } + //Return empty array for empty list input + { + array = psListToArray(emptyList); + ok( array->n == 0 && psMemCheckArray(array), + "psListToArray: return empty array for empty list input."); + psFree(array); + array = NULL; + } + //Return correct array for valid list input + { + array = psListToArray(list); + ok( array->n == 3 && *((psS32*)(array->data[0])) == 2, + "psListToArray: return correct array for valid list input."); + } + + //Tests for psArrayToList + //Return NULL for NULL array input + { + out = psArrayToList(NULL); + ok( out == NULL, + "psArrayToList: return NULL for NULL array input."); + } + //Return empty list for empty array input + { + out = psArrayToList(emptyArray); + ok( out->n == 0 && psMemCheckList(out), + "psArrayToList: return empty list for empty array input."); + psFree(out); + out = NULL; + } + //Return correct list for valid array input + { + out = psArrayToList(array); + ok( out->n == 3 && *((psS32*)psListGet(out, PS_LIST_HEAD)) == 2, + "psArrayToList: return correct list for valid array input."); + } + + //Tests for psListSort + //Return NULL for NULL list input + { + psList *none = NULL; + none = psListSort(none, (psComparePtrFunc)psCompareDescendingS32Ptr); + ok( none == NULL, + "psListSort: return NULL for NULL list input."); + } + //Return empty list for empty list input + { + emptyList = psListSort(emptyList, (psComparePtrFunc)psCompareDescendingS32Ptr); + ok( emptyList != NULL, + "psListSort: return empty list for empty list input."); + } + //Return properly sorted list for valid inputs + { + list = psListSort(list, (psComparePtrFunc)psCompareS32Ptr); + ok( *((psS32*)psListGet(list, 0)) == 1 && *((psS32*)psListGet(list, 1)) == 2, + "psListSort: return properly sorted list for valid inputs."); + } + //Return unchanged list for NULL psComparePtrFunc + { + psList *tempList = NULL; + tempList = psListSort(list, NULL); + ok( tempList == list, + "psListSort: return unchanged list for NULL psComparePtrFunc."); + } + + + //Check for Memory leaks + { + psFree(array); + psFree(out); + psFree(emptyArray); + psFree(emptyList); + psFree(list); + psFree(s1); + psFree(s2); + psFree(s3); + checkMem(); + } + +} Index: /branches/rel-1-1/psLib/test/types/tap_psLookupTable_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psLookupTable_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psLookupTable_all.c (revision 12167) @@ -0,0 +1,304 @@ +/** + * C Implementation: tap_psLookupTable_all + * + * Description: Tests for psLookupTableAlloc, psMemCheckLookupTable, + * psVectorsReadFromFile, psLookupTableImport, psLookupTableRead, + * psLookupTableInterpolate, psLookupTableInterpolateAll + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testLookupTableAlloc(void); +void testLookupTableReadImport(void); +void testLookupTableInterpolates(void); + +int main(void) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(28); + + // note("Tests for psLookupTable Functions"); + + testLookupTableAlloc(); + testLookupTableReadImport(); + testLookupTableInterpolates(); + + done(); +} + +void testLookupTableAlloc(void) +{ + // note(" >>>Test 1: psLookupTableAlloc & psMemCheckLookupTable Fxns"); + + psLookupTable *lt = NULL; + + //Tests for psLookupTableAlloc + //Return NULL for NULL filename input + { + lt = psLookupTableAlloc(NULL, "\%f \%lf \%d \%ld", 10); + ok( lt == NULL, + "psLookupTableAlloc: return NULL for NULL filename input."); + } + //Return NULL for NULL format input + { + lt = psLookupTableAlloc("table.dat", NULL, 10); + ok( lt == NULL, + "psLookupTableAlloc: return NULL for NULL format input."); + } + //Return properly allocated lookupTable for valid inputs + { + lt = psLookupTableAlloc("table.dat", "\%f \%lf \%d \%ld", 10); + ok( lt != NULL && psMemCheckLookupTable(lt), + "psLookupTableAlloc: " + "return properly allocated lookupTable for valid inputs."); + } + + //Tests for psMemCheckArray + //Make sure psMemCheckArray works correctly - return false + { + int j = 2; + ok( !psMemCheckLookupTable(&j), + "psMemCheckLookupTable: return false for non-LookupTable input."); + } + + //Check for Memory leaks + { + psFree(lt); + checkMem(); + } + +} + +void testLookupTableReadImport(void) +{ + // diag(" >>>Test 2: psVectorsReadFromFile, psLookupTableImport, psLookupTableRead Fxns"); + psArray *outVec = NULL; + psArray *vectors = NULL; + psLookupTable* table1 = NULL; + psLookupTable* tableOut = NULL; + long numRows = 0; + + //Tests for psVectorReadFromFile + // Attempt to read from NULL filename input + { + outVec = psVectorsReadFromFile(NULL, + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for NULL filename input."); + } + // Attempt to read from NULL format input + { + outVec = psVectorsReadFromFile("table.dat", NULL); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for NULL format input."); + } + // Attempt to read from invalid filename input + { + outVec = psVectorsReadFromFile("tableS32.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for invalid filename input."); + } + // Attempt to read from invalid format input + { + outVec = psVectorsReadFromFile("table.dat", "\%s"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for invalid format input."); + } + // Attempt to read from table containing invalid entry - F32 + { + outVec = psVectorsReadFromFile("tableF32_err.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for table containing invalid entry."); + } + // Attempt to read from table containing invalid entry - F64 + { + outVec = psVectorsReadFromFile("tableF64_err.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for table containing invalid entry."); + } + // Attempt to read from table containing invalid entry - S32 + { + outVec = psVectorsReadFromFile("tableS32_err.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for table containing invalid entry."); + } + // Attempt to read from table containing invalid entry - S64 + { + outVec = psVectorsReadFromFile("tableS64_err.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for table containing invalid entry."); + } + // Attempt to read from empty table + { + outVec = psVectorsReadFromFile("tableF32_2.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for empty table."); + } + // Attempt to read from file with partially constructed row + { + outVec = psVectorsReadFromFile("table3.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec == NULL, + "psVectorsReadFromFile: return NULL for table with partially" + " constructed row."); + } + //Attempt to read with valid inputs + { + outVec = psVectorsReadFromFile("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + ok( outVec != NULL && outVec->n == 9 && + ((psVector*)(outVec->data[6]))->data.S32[1] == -8, + "psVectorsReadFromFile: return correct array for valid format input."); + } + + //Tests for psLookupTableRead + // Attempt to read table with NULL input table specified + numRows = psLookupTableRead(table1); + { + ok( numRows == 0, + "psLookupTableRead: return NULL for NULL filename input."); + } + // Attempt to read table with bad filename specified + table1 = psLookupTableAlloc("psTable.dat", "\%f \%lf \%d \%ld", 10); + numRows = psLookupTableRead(table1); + { + ok( numRows == 0, + "psLookupTableRead: return NULL for table with invalid filename."); + } + + // Attempt to read valid table with wrong indexCol + psFree(table1); + table1 = psLookupTableAlloc("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 10); + numRows = psLookupTableRead(table1); + { + ok( numRows == 0, + "psLookupTableRead: return correct number of rows for valid inputs."); + } + // Attempt to read valid table + psFree(table1); + table1 = psLookupTableAlloc("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 0); + numRows = psLookupTableRead(table1); + { + ok( numRows == 4, + "psLookupTableRead: return correct number of rows for valid inputs."); + } + + //Tests for psLookupTableImport (remaining cases) + // Attempt to import table with negative indexCol + vectors = psVectorsReadFromFile(table1->filename, table1->format); + tableOut = psLookupTableImport(table1, vectors, -1 ); + { + ok( tableOut == NULL, + "psLookupTableImport: return NULL for negative indexCol input."); + } + //Attempt to import table with unsorted array column + psFree(table1); + table1 = psLookupTableAlloc("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 0); + tableOut = psLookupTableImport(table1, vectors, 7 ); + { + ok( tableOut != NULL, + "psLookupTableImport: return correct table for array with unsorted column"); + } + + //Check for Memory leaks + { + psFree(vectors); + psFree(outVec); + psFree(table1); + checkMem(); + } + +} + +void testLookupTableInterpolates(void) +{ + // diag(" >>>Test 3: psLookupTableInterpolate & psLookupTableInterpolateAll Fxns"); + psLookupTable *table1 = NULL; + psVector *vec = NULL; + table1 = psLookupTableAlloc("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 0); + psLookupTable *table2 = NULL; + table2 = psLookupTableAlloc("table.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 0); + psLookupTableRead(table2); + + //Tests for psLookupTableInterpolateAll + //Return NULL for NULL table input + { + vec = psLookupTableInterpolateAll(NULL, 0); + ok( vec == NULL, + "psLookupTableInterpolateAll: return NULL for NULL table input."); + } + //Return NULL for NULL table values + { + vec = psLookupTableInterpolateAll(table1, 0); + ok( vec == NULL, + "psLookupTableInterpolateAll: return NULL for NULL table values."); + } + //Return NULL for table with table->values->n == 0 + { + long n = table2->values->n; + table2->values->n = 0; + vec = psLookupTableInterpolateAll(table2, 0); + ok( vec == NULL, + "psLookupTableInterpolateAll: return NULL for table with no columns."); + table2->values->n = n; + } + //Return NULL for invalid index input + { + vec = psLookupTableInterpolateAll(table2, -10.5); + ok( vec == NULL, + "psLookupTableInterpolateAll: return NULL for invalid index input."); + } + //Return correct vector output for valid inputs + { + vec = psLookupTableInterpolateAll(table2, 1); + skip_start( vec == NULL, 1, + "Skipping 1 tests because psLookupTableInterpolateAll failed"); + ok_double(vec->data.F64[0], 1.0, + "psLookupTableInterpolateAll: return correct output vector for valid inputs."); + skip_end(); + } + + //Remaining tests for psLookupTableInterpolate + //Return NAN for invalid index - divide by zero error + psLookupTable *table3 = NULL; + table3 = psLookupTableAlloc("table2.dat", + "\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf", 0); + psLookupTableRead(table3); + { + double retVal; + retVal = psLookupTableInterpolate(table3, 1.5e-20, 0); + ok( isnan(retVal), + "psLookupTableInterpolateAll: return NAN for invalid index input."); + } + + //Check for Memory leaks + { + psFree(table3); + psFree(vec); + psFree(table2); + psFree(table1); + checkMem(); + } + +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigFormat.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigFormat.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigFormat.c (revision 12167) @@ -0,0 +1,181 @@ +/** + * C Implementation: tap_psMetadataConfigFormat.c + * + * Description: Tests for psMetadataConfigFormat + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main(void) +{ + plan_tests(19); + + psMetadata *md = NULL; + psString out = NULL; + + //psString psMetadataConfigFormat(psMetadata *md); + + //Return NULL for NULL metadata input + { + psMemId id = psMemGetId(); + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for NULL metadata input."); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Return NULL for empty metadata input + { + md = psMetadataAlloc(); + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for empty metadata input."); + } + + + //Return NULL for metadata with missing hash table + { + psMetadataAddS32(md, PS_LIST_HEAD, "new_S32", 0, "", 666); + psMetadataAddS32(md, PS_LIST_HEAD, "new_S32", PS_META_DUPLICATE_OK, "", 665); + psHash *temp = md->hash; + md->hash = NULL; + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for metadata with missing " + "hash table."); + md->hash = temp; + } + + + //Return NULL for metadata containing a psList + { + psList *list = psListAlloc(NULL); + psMetadataAddList(md, PS_LIST_HEAD, "new_list", 0, "", list); + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for metadata containing a psList."); + psFree(list); + psFree(md); + } + + + //Return NULL for attempting to format vector with type = complex + { + psMemId id = psMemGetId(); + psVector *vec = psVectorAlloc(60, PS_TYPE_C64); + for (int i = 0; i < 5; i++) + { + vec->data.C64[i] = i+1; + } + md = psMetadataAlloc(); + psMetadataAddVector(md, PS_LIST_TAIL, "vectorC64", 0, "", vec); + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for metadata containing a " + "Complex vector."); + psFree(vec); + psFree(md); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Return NULL for attempting to format psTime with type = -1 + { + psMemId id = psMemGetId(); + md = psMetadataAlloc(); + psTime *time = psTimeAlloc(PS_TIME_TT); + time->type = -1; + psMetadataAddTime(md, PS_LIST_TAIL, "time", 0, "", time); + out = psMetadataConfigFormat(md); + ok( out == NULL, + "psMetadataConfigFormat: return NULL for metadata containing a " + "invalid time type."); + psFree(time); + psFree(md); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Return valid metadata for attempting to format NULL psTime metadataItem + { + psMemId id = psMemGetId(); + md = psMetadataAlloc(); + psTime *time = psTimeAlloc(PS_TIME_TT); + psMetadataAddTime(md, PS_LIST_HEAD, "time", 0, "", time); + psMetadataItem *item = psMetadataGet(md, PS_LIST_HEAD); + psFree(item->data.V); + item->data.V = NULL; + out = psMetadataConfigFormat(md); + ok( out != NULL, + "psMetadataConfigFormat: return valid metadata for metadata " + "containing a NULL time."); + char configTest[32]; + strncpy(configTest, "time TAI NULL", 31); + ok_strn(configTest, out, 31, + "psMetadataConfigFormat: return correct output string."); + psFree(time); + psFree(out); + out = NULL; + psFree(md); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Return valid metadata for attempting to format NULL psTime metadataItem + { + psMemId id = psMemGetId(); + md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "new_S32", 0, NULL, 666); + psMetadataAddS32(md, PS_LIST_HEAD, "new_S32", PS_META_DUPLICATE_OK, NULL, 665); + out = psMetadataConfigFormat(md); + ok( out != NULL, + "psMetadataConfigFormat: return valid metadata for metadata " + "containing a NULL time."); + char configTest[62]; + strncpy(configTest, "new_S32 MULTI\nnew_S32 S32 666", 61); + ok_strn(configTest, out, strlen(configTest), + "psMetadataConfigFormat: return correct output string."); + psFree(out); + out = NULL; + psFree(md); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Return valid metadata for attempting to format NULL psTime metadataItem + { + psMemId id = psMemGetId(); + md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "f32", 0, "f32_1", 666); + psMetadataAddS32(md, PS_LIST_TAIL, "f32", PS_META_DUPLICATE_OK, "f32_3", 666); + psMetadataAddS32(md, PS_LIST_TAIL, "f32", PS_META_DUPLICATE_OK, "f32_2", 665); + out = psMetadataConfigFormat(md); + ok( out != NULL, + "psMetadataConfigFormat: return valid metadata for metadata " + "containing a NULL time."); + char configTest[201]; + strncpy(configTest, + "f32 MULTI" + "\nf32 S32 666 # f32_1" + "\nf32 S32 666 # f32_3" + "\nf32 S32 665 # f32_2", 200); + ok_strn(configTest, out, strlen(configTest), + "psMetadataConfigFormat: return correct output string."); + psFree(out); + out = NULL; + psFree(md); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + done(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigParse_time.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigParse_time.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigParse_time.c (revision 12167) @@ -0,0 +1,182 @@ +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(40); + + note("psMetadataParseConfig time format tests"); + + { + psMemId id = psMemGetId(); + + char *testStr = "time UTC 2005-03-18T16:05:00Z\n"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + psTime *time1 = psMetadataLookupTime(NULL, md, "time"); + psTime *time2 = psTimeFromISO("2005-03-18T16:05:00Z", PS_TIME_UTC); + double delta = psTimeDelta(time1, time2); + psFree(time2); + + ok(md, "md = %x", md); + ok(nBad == 0, "number of bad lines = %d", nBad); // One bad line from boolean + ok(md->list->n == 1, "number of items in metadata = %ld", md->list->n); + ok1(time1->type == PS_TIME_UTC); + ok(delta == 0.0, "reported time was off by %fs", delta); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + char *testStr = "time UT1 2005-03-18T16:05:00Z\n"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + psTime *time1 = psMetadataLookupTime(NULL, md, "time"); + psTime *time2 = psTimeFromISO("2005-03-18T16:05:00Z", PS_TIME_UT1); + double delta = psTimeDelta(time1, time2); + psFree(time2); + + ok(md, "md = %x", md); + ok(nBad == 0, "number of bad lines = %d", nBad); + ok(md->list->n == 1, "number of items in metadata = %ld", md->list->n); + ok1(time1->type == PS_TIME_UT1); + ok(delta == 0.0, "reported time was off by %fs", delta); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + char *testStr = "time TAI 2005-03-18T16:05:00Z\n"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + psTime *time1 = psMetadataLookupTime(NULL, md, "time"); + psTime *time2 = psTimeFromISO("2005-03-18T16:05:00Z", PS_TIME_TAI); + double delta = psTimeDelta(time1, time2); + psFree(time2); + + ok(md, "md = %x", md); + ok(nBad == 0, "number of bad lines = %d", nBad); + ok(md->list->n == 1, "number of items in metadata = %ld", md->list->n); + ok1(time1->type == PS_TIME_TAI); + ok(delta == 0.0, "reported time was off by %fs", delta); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + char *testStr = "time TT 2005-03-18T16:05:00Z"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + psTime *time1 = psMetadataLookupTime(NULL, md, "time"); + psTime *time2 = psTimeFromISO("2005-03-18T16:05:00Z", PS_TIME_TT); + double delta = psTimeDelta(time1, time2); + psFree(time2); + + ok(md, "md = %x", md); + ok(nBad == 0, "number of bad lines = %d", nBad); + ok(md->list->n == 1, "number of items in metadata = %ld", md->list->n); + ok1(time1->type == PS_TIME_TT); + ok(delta == 0.0, "reported time was off by %fs", delta); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + // missing Z + char *testStr = "broken UTC 2005-03-18T16:05:00"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + + ok(md, "md = %x", md); + ok(nBad == 1, "number of bad lines = %d", nBad); + // XXX should a md even be returned instead of NULL? + ok(md->list->n == 0, "number of items in metadata = %ld", md->list->n); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + // missing Z + char *testStr = "broken UT1 2005-03-18T16:05:00"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + + ok(md, "md = %x", md); + ok(nBad == 1, "number of bad lines = %d", nBad); + // XXX should a md even be returned instead of NULL? + ok(md->list->n == 0, "number of items in metadata = %ld", md->list->n); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + // missing Z + char *testStr = "broken TAI 2005-03-18T16:05:00"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + + ok(md, "md = %x", md); + ok(nBad == 1, "number of bad lines = %d", nBad); + // XXX should a md even be returned instead of NULL? + ok(md->list->n == 0, "number of items in metadata = %ld", md->list->n); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + { + psMemId id = psMemGetId(); + + // missing Z + char *testStr = "broken TT 2005-03-18T16:05:00"; + + psU32 nBad = 0; + psMetadata *md = psMetadataConfigParse(NULL, &nBad, testStr, false); + + ok(md, "md = %x", md); + ok(nBad == 1, "number of bad lines = %d", nBad); + // XXX should a md even be returned instead of NULL? + ok(md->list->n == 0, "number of items in metadata = %ld", md->list->n); + + psFree(md); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigPrint.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigPrint.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigPrint.c (revision 12167) @@ -0,0 +1,107 @@ +/** + * C Implementation: tap_psMetadataConfig_output + * + * Description: Tests for psMetadataConfigPrint + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main(void) +{ + plan_tests(7); + + //Return false for NULL metadata input + { + FILE *openfile = fopen("mdcfg.prt", "w+"); + + ok(!psMetadataConfigPrint(openfile, NULL), + "return false for NULL metadata input."); + + fclose(openfile); + remove + ("mdcfg.prt"); + } + + //Return false for empty metadata input + { + FILE *openfile = fopen("mdcfg.prt", "w+"); + psMetadata *md = psMetadataAlloc(); + + ok(!psMetadataConfigPrint(openfile, md), + "return false for empty metadata input."); + + psFree(md); + fclose(openfile); + remove + ("mdcfg.prt"); + } + + //Return false for NULL file input + { + psMetadata *md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "new S32", 0, "", 666); + + ok(!psMetadataConfigPrint(NULL, md), + "return false for NULL FILE* input."); + + psFree(md); + } + + // Return false for read-only file input + { + // create an empty file to open read only later + { + FILE *openfile = fopen("mdcfg.prt", "w"); + fclose(openfile); + } + + FILE *openfile = fopen("mdcfg.prt", "r"); + psMetadata *md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "new S32", 0, "", 666); + + ok(!psMetadataConfigPrint(openfile, md), + "return false for read-only FILE* input."); + + psFree(md); + fclose(openfile); + remove + ("mdcfg.prt"); + } + + // Return true for valid inputs + { + FILE *openfile = fopen("mdcfg.prt", "w+"); + psMetadata *md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "new S32", 0, "", 666); + + ok(psMetadataConfigPrint(openfile, md), + "return true for valid inputs."); + + psFree(md); + fclose(openfile); + + char fileStr2[62]; + memset(fileStr2, '\0', 62); + FILE *mdcfg = fopen("mdcfg.prt", "r"); + + fread(fileStr2, 1, 31, mdcfg); + + ok_strn(fileStr2, "\nnew S32 S32 666 ", 30, + "return correct output."); + + fclose(mdcfg); + remove + ("mdcfg.prt"); + } + + done(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigRead.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigRead.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigRead.c (revision 12167) @@ -0,0 +1,283 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +#define FILENAME "tap_psMetadataConfigRead.config" + +#define STRING1 "# This is a comment that should be ignored\n" +#define STRING2 "\t\t\tSomeString STR This is a string # This is the comment \n" +#define STRING3 " \t vAlUes\t\t\t\tMETADATA\t\t\t\n" +#define STRING3a "aFloat\tF32\t1.2345\t#A number with a decimal point\n" +#define STRING3b " anInt S32 98765\n" +#define STRING3c "\t\t\t\t\t\t\t\t\t\t\t\t\tEND\n" +#define STRING4 "Numbers\tMULTI\t\n" +#define STRING5 "Numbers F32 1.23#Number one\n" +#define STRING6 " \t \t \t \n" +#define STRING7 "Numbers\t\t\tSTR One point two three #Number two\n" +#define STRING8 "Numbers BOOL 1#This is true\n" +#define STRING9 " \tboolean BOOL TRUEsomeTimesButFALSEatOthers#This should fail\n" +#define STRING10 "SomeBoolean BOOL false\n" + +#define NAME2 "SomeString" +#define TYPE2 PS_DATA_STRING +#define MIX2 string +#define VALUE2 "This is a string" +#define COMMENT2 "This is the comment" + +#define NAME3 "vAlUes" +#define TYPE3 PS_DATA_METADATA +#define VALUE3 NULL // Not really, but serves as a placeholder +#define COMMENT3 "" + +#define NAME3a "aFloat" +#define TYPE3a PS_TYPE_F32 +#define MIX3a real +#define VALUE3a 1.2345 +#define COMMENT3a "A number with a decimal point" + +#define NAME3b "anInt" +#define TYPE3b PS_TYPE_S32 +#define MIX3b integer +#define VALUE3b 98765 +#define COMMENT3b "" + +#define NAME5 "Numbers" +#define TYPE5 PS_TYPE_F32 +#define MIX5 real +#define VALUE5 1.23 +#define COMMENT5 "Number one" + +#define NAME7 "Numbers" +#define TYPE7 PS_DATA_STRING +#define MIX7 string +#define VALUE7 "One point two three" +#define COMMENT7 "Number two" + +#define NAME8 "Numbers" +#define TYPE8 PS_TYPE_BOOL +#define MIX8 boolean +#define VALUE8 1 +#define COMMENT8 "This is true" + +#define NAME10 "SomeBoolean" +#define TYPE10 PS_TYPE_BOOL +#define MIX10 boolean +#define VALUE10 0 +#define COMMENT10 "" + +#define MULTI_NAME "Numbers" + +#define BAD_NAME "boolean" + +typedef union { + const char *string; + float real; + int integer; + bool boolean; +} mixedType; + + +// Generate the metadata config file to be parsed +static void generateMDConfig(void) +{ + FILE *fp = fopen(FILENAME, "w"); // Configuration file + fprintf(fp, "%s", STRING1); + fprintf(fp, "%s", STRING2); + fprintf(fp, "%s", STRING3); + fprintf(fp, "%s", STRING3a); + fprintf(fp, "%s", STRING3b); + fprintf(fp, "%s", STRING3c); + fprintf(fp, "%s", STRING4); + fprintf(fp, "%s", STRING5); + fprintf(fp, "%s", STRING6); + fprintf(fp, "%s", STRING7); + fprintf(fp, "%s", STRING8); + fprintf(fp, "%s", STRING9); + fprintf(fp, "%s", STRING10); + fclose(fp); +} + +static void *testItem(const psMetadataItem *item, // Item to check + const char *name, // Name of the item + int type, // Type for item + const char *comment, // Comment for the item + mixedType value // Value for the item + ) +{ + skip_start(!item, 3, "Skipping 4 tests because !item"); + ok(strcmp(item->name, name) == 0, "item->name = %s", item->name); + ok(strcmp(item->comment, comment) == 0, "item->comment = %s", item->comment); + ok(item->type == type, "item->type = %x", item->type); + skip_end(); + + if (item->type == PS_DATA_METADATA || item->type == PS_DATA_METADATA_MULTI) { + return item->data.V; + } + + skip_start(item->type != type, 1, "Skipping 1 test because the item has incorrect type"); + switch (item->type) { + case PS_DATA_STRING: { + ok(strcmp(item->data.V, value.string) == 0, "item->data.V = %s", item->data.V); + break; + } + case PS_TYPE_F32: { + ok(item->data.F32 == value.real, "item->data.F32 = %f", item->data.F32); + break; + } + case PS_TYPE_S32: { + ok(item->data.S32 == value.integer, "item->data.S32 = %d", item->data.S32); + break; + } + case PS_TYPE_BOOL: { + ok(item->data.B == value.boolean, "item->data.B = %d", item->data.B); + break; + } + default: { + ok(false, "Unknown item->type = %x", item->type); + } + } + skip_end(); + return NULL; +} + + +int main (void) +{ + plan_tests(52); + + note("psMetadataConfigRead tests"); + + generateMDConfig(); + + unsigned int numBadLines = 0; // Number of bad lines + psMetadata *md = psMetadataConfigRead(NULL, &numBadLines, FILENAME, false); + unlink (FILENAME); + + ok(md, "md = %x", md); + ok(numBadLines == 1, "number of bad lines = %d", numBadLines); // One bad line from boolean + skip_start(!md || numBadLines != 1, 0, + "Skipping 0 tests because psMetadataConfigRead failed."); + ok(psListLength(md->list) == 6, "size = %d", psListLength(md->list)); + + { + // Go through and make sure everything's there + psMetadataIterator *iterator = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); // Iterator + + note("Checking the output"); + { + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; + value.MIX2 = VALUE2; + testItem(item, NAME2, TYPE2, COMMENT2, value); + } + + { + note("Checking the nested METADATA"); + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; // Needed only to check the other stuff + psMetadata *nested = testItem(item, NAME3, TYPE3, COMMENT3, value); + ok(psListLength(nested->list) == 2, "size = %d", psListLength(nested->list)); + skip_start(psListLength(nested->list) != 2, 8, "Skipping 8 tests because wrong size"); + psMetadataIterator *nestedIter = psMetadataIteratorAlloc(nested, PS_LIST_HEAD, NULL); + + { + psMetadataItem *item = psMetadataGetAndIncrement(nestedIter); + mixedType value; + value.MIX3a = VALUE3a; + testItem(item, NAME3a, TYPE3a, COMMENT3a, value); + } + + { + psMetadataItem *item = psMetadataGetAndIncrement(nestedIter); + mixedType value; + value.MIX3b = VALUE3b; + testItem(item, NAME3b, TYPE3b, COMMENT3b, value); + } + + psFree(nestedIter); + skip_end(); + } + + note("Checking the rest"); + { + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; + value.MIX5 = VALUE5; + testItem(item, NAME5, TYPE5, COMMENT5, value); + } + + { + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; + value.MIX7 = VALUE7; + testItem(item, NAME7, TYPE7, COMMENT7, value); + } + + { + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; + value.MIX8 = VALUE8; + testItem(item, NAME8, TYPE8, COMMENT8, value); + } + + { + psMetadataItem *item = psMetadataGetAndIncrement(iterator); + mixedType value; + value.MIX10 = VALUE10; + testItem(item, NAME10, TYPE10, COMMENT10, value); + } + + psFree(iterator); + } + + note("Checking the MULTI"); + { + // Check that the correct item is MULTI + psMetadataItem *item = psMetadataLookup(md, MULTI_NAME); + mixedType value; // Needed only so we can test other stuff + psList *multi = testItem(item, MULTI_NAME, PS_DATA_METADATA_MULTI, "", value); + ok(psListLength(multi) == 3, "length = %d", psListLength(multi)); + skip_start(psListLength(multi) != 3, 12, "Skipping 12 tests because MULTI failed."); + psListIterator *multiIter = psListIteratorAlloc(multi, PS_LIST_HEAD, false); // Iterator + + { + psMetadataItem *item = psListGetAndIncrement(multiIter); + mixedType value; + value.MIX5 = VALUE5; + testItem(item, NAME5, TYPE5, COMMENT5, value); + } + + { + psMetadataItem *item = psListGetAndIncrement(multiIter); + mixedType value; + value.MIX7 = VALUE7; + testItem(item, NAME7, TYPE7, COMMENT7, value); + } + + { + psMetadataItem *item = psListGetAndIncrement(multiIter); + mixedType value; + value.MIX8 = VALUE8; + testItem(item, NAME8, TYPE8, COMMENT8, value); + } + psFree(multiIter); + skip_end(); + } + + note("Checking the bad line"); + { + // Check that the bad one isn't there + psMetadataItem *item = psMetadataLookup(md, BAD_NAME); + ok(!item, "item = %x", item); + } + + skip_end(); + + psFree(md); + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigWrite.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigWrite.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfigWrite.c (revision 12167) @@ -0,0 +1,73 @@ +/** + * C Implementation: tap_psMetadataConfigWrite + * + * Description: Tests for psMetadataConfigWrite + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main(void) +{ + plan_tests(7); + + //Return false for NULL metadata input + { + ok( !psMetadataConfigWrite(NULL, "mdcfg.wrt"), + "return false for NULL metadata input."); + } + + //Return false for NULL filename input + { + psMetadata *md = psMetadataAlloc(); + ok( !psMetadataConfigWrite(md, NULL), + "return false for NULL filename input."); + psFree(md); + } + + //Return false for invalid filename input + { + psMetadata *md = psMetadataAlloc(); + ok( !psMetadataConfigWrite(md, "."), + "return false for invalid filename input."); + psFree(md); + } + + //Return false for empty metadata input + { + psMetadata *md = psMetadataAlloc(); + ok( !psMetadataConfigWrite(md, "mdcfg.wrt"), + "return false for empty metadata input."); + psFree(md); + } + + //Return true for valid inputs + { + psMetadata *md = psMetadataAlloc(); + psMetadataAddBool(md, PS_LIST_TAIL, "item1-1", 0, "I am a boolean", true); + ok( psMetadataConfigWrite(md, "mdcfg.wrt"), + "return true for valid inputs."); + char configTest[61]; + char fileStr[62]; + FILE *mdcfg = fopen("mdcfg.wrt", "r"); + fgets(fileStr, 61, mdcfg); + strncpy(configTest, + "item1-1 BOOL T # I am a boolean", 60); + ok_strn(configTest, fileStr, 60, + "return correct output."); + fclose(mdcfg); + remove + ("mdcfg.wrt"); + psFree(md); + } + + done(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataConfig_input.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataConfig_input.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataConfig_input.c (revision 12167) @@ -0,0 +1,259 @@ +/** + * C Implementation: tap_psMetadataConfig_input + * + * Description: Tests for psMetadataConfigRead & psMetadataConfigParse + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include +#include +#include + + +#include "tap.h" +#include "pstap.h" + +static void testMetaConfigRead(void); +static void testMetaConfigParse(void); + + +int main(void) +{ + plan_tests(33); + + note("Tests for psMetadataConfig Input Functions"); + + testMetaConfigRead(); + testMetaConfigParse(); + + done(); +} + +void testMetaConfigRead(void) +{ + note(" >>>Test 1: psMetadataConfigRead"); + + //Return NULL for NULL filename input + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, NULL, false); + ok( out == NULL, + "psMetadataConfigRead: return NULL for NULL filename input."); + } + //Return NULL for invalid filename input + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, ".", false); + ok( out == NULL, + "psMetadataConfigRead: return NULL for invalid filename input."); + } + //Return NULL for missing file input + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, "table4.dat", false); + ok( out == NULL, + "psMetadataConfigRead: return NULL for missing file input."); + } + //Return empty metadata for read-only file with invalid syntax + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, "table3.dat", false); + ok( out != NULL && out->list->n == 0, + "psMetadataConfigRead: return empty metadata for file" + " with invalid syntax."); + psFree(out); + } + //Return true for valid inputs - overwrite = false + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, "metaconf.in", false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && nfail == 25, + "psMetadataConfigRead: return correct metadata for valid inputs."); + skip_start( tempItem == NULL, 6, + "Skipping 1 tests because metadata container is empty!"); + ok_str( tempItem->name, "item1", + "psMetadataConfigRead: return correct metadataItem name from " + "returned metadata."); + ok( tempItem->type == PS_DATA_BOOL && tempItem->data.B == true, + "psMetadataConfigRead: return correct metadataItem data from " + "returned metadata."); + ok_str( tempItem->comment, "I am a boolean", + "psMetadataConfigRead: return correct metadataItem comment from " + "returned metadata."); + tempItem = psMetadataGet(out, PS_LIST_TAIL); + ok_str( tempItem->name, "meta1", + "psMetadataConfigRead: return correct metadataItem name from " + "returned metadata."); + ok( tempItem->type == PS_DATA_METADATA && + ((psMetadata*)(tempItem->data.V))->list->n == 1 + && strlen(tempItem->comment) == 0, + "psMetadataConfigRead: return correct metadataItem data from " + "returned metadata."); + skip_end(); + // psMetadataConfigWrite(out, "mdc-overwrite_false.txt"); + psFree(out); + } + //Return true for valid inputs - overwrite = true + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigRead(NULL, &nfail, "metaconf.in", true); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && nfail == 21, + "psMetadataConfigRead: return correct metadata for valid inputs."); + skip_start( tempItem == NULL, 6, + "Skipping 1 tests because metadata container is empty!"); + ok_str( tempItem->name, "item1", + "psMetadataConfigRead: return correct metadataItem name from " + "returned metadata."); + ok( tempItem->type == PS_DATA_BOOL && tempItem->data.B == false, + "psMetadataConfigRead: return correct metadataItem data from " + "returned metadata."); + ok_str( tempItem->comment, "I am a boolean2", + "psMetadataConfigRead: return correct metadataItem comment from " + "returned metadata."); + tempItem = psMetadataGet(out, PS_LIST_TAIL); + ok_str( tempItem->name, "DD2", + "psMetadataConfigRead: return correct metadataItem name from " + "returned metadata."); + ok( tempItem->type == PS_DATA_METADATA && + ((psMetadata*)(tempItem->data.V))->list->n == 1 + && strlen(tempItem->comment) == 0, + "psMetadataConfigRead: return correct metadataItem data from " + "returned metadata."); + skip_end(); + // psMetadataConfigWrite(out, "mdc-overwrite_true.txt"); + psFree(out); + } + + //Check for Memory leaks + checkMem(); +} + +void testMetaConfigParse(void) +{ + note(" >>>Test 2: psMetadataConfigParse"); + char str1[70]; + char str2[70]; + char str3[70]; + char str4[70]; + char str5[70]; + char str6[70]; + char str7[70]; + char str8[70]; + char str9[70]; + strcpy(str1, "-10.05 2 4"); + strcpy(str2, "new S32 666"); + strcpy(str3, "item4 F64 6.28"); + strcpy(str4, "item8 S8 3\nitem8 S8 5"); + strcpy(str5, "item1 BOOL T"); + strcpy(str6, "item6 S16"); + strcpy(str7, "@vector6 U8 1 2 3 4 5 # I am a vector"); + strcpy(str8, "time01 TAI 1970-01-01T00:16:39Z # I am time"); + strcpy(str9, "END\n"); + + //Return NULL for NULL string input + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigParse(NULL, &nfail, NULL, false); + ok( out == NULL, + "psMetadataConfigParse: return NULL for NULL string input."); + } + //Return empty metadata for incorrect string input + { + psMetadata *out = psMetadataConfigParse(NULL, NULL, str1, false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem == NULL, + "psMetadataConfigParse: return empty metadata for invalid " + "string input."); + psFree(out); + } + //Return correct metadata for correct string input - S32 + { + psMetadata *out = psMetadataConfigParse(NULL, NULL, str2, false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem != NULL, + "psMetadataConfigParse: return correct metadata for valid " + "string input. (S32)"); + skip_start( tempItem == NULL, 2, + "Skipping 1 tests because metadata container is empty!"); + ok( tempItem->type == PS_TYPE_S32 && tempItem->data.S32 == 666, + "psMetadataConfigParse: return correct metadataItem data (S32)"); + ok_str( tempItem->name, "new", + "psMetadataConfigParse: return correct metadataItem name (S32)"); + skip_end(); + psFree(out); + } + //Return correct metadata for correct string input - F64 + { + psMetadata *out = psMetadataConfigParse(NULL, NULL, str3, false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem != NULL, + "psMetadataConfigParse: return correct metadata for valid " + "string input. (F64)"); + skip_start( tempItem == NULL, 2, + "Skipping 1 tests because metadata container is empty!"); + ok( tempItem->type == PS_DATA_F64, + "psMetadataConfigParse: return correct metadataItem data (F64) " + "from outputted metadata."); + ok_float(6.28, tempItem->data.F64, + "psMetadataConfigParse: return correct metadataItem data (F64) " + "value."); + ok_str( tempItem->name, "item4", + "psMetadataConfigParse: return correct metadataItem name (F64)"); + skip_end(); + psFree(out); + } + //Return correct metadata for string with duplicate entry - S8 + { + unsigned int nfail = 0; + psMetadata *out = psMetadataConfigParse(NULL, &nfail, str4, false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem != NULL && out->list->n == 1 && nfail == 1, + "psMetadataConfigParse: return correct metadata for string " + "with duplicate entry. (S8)"); + skip_start( tempItem == NULL, 2, + "Skipping 1 tests because metadata container is empty!"); + ok( tempItem->type == PS_TYPE_S8 && tempItem->data.S8 == 3, + "psMetadataConfigParse: return correct metadataItem data (S8)"); + ok_str( tempItem->name, "item8", + "psMetadataConfigParse: return correct metadataItem name (S8)"); + skip_end(); + psFree(out); + } + //Return correct metadata for correct string input - Vector + { + psMetadata *out = psMetadataConfigParse(NULL, NULL, str7, true); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem != NULL, + "psMetadataConfigParse: return correct metadata for valid " + "string input. (Vector)"); + skip_start( tempItem == NULL, 2, + "Skipping 1 tests because metadata container is empty!"); + ok( tempItem->type == PS_DATA_VECTOR + && ((psVector*)(tempItem->data.V))->data.U8[0] == 1, + "psMetadataConfigParse: return correct metadataItem data (Vector) "); + ok_str( tempItem->name, "vector6", + "psMetadataConfigParse: return correct metadataItem name (Vector)"); + skip_end(); + psFree(out); + } + //Return empty metadata for incorrect string input + { + psMetadata *out = psMetadataConfigParse(NULL, NULL, str9, false); + psMetadataItem *tempItem = psMetadataGet(out, PS_LIST_HEAD); + ok( out != NULL && tempItem == NULL, + "psMetadataConfigParse: return empty metadata for invalid " + "string input."); + psFree(out); + } + // Check for Memory leaks + checkMem(); + +} + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataItemCompare.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataItemCompare.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataItemCompare.c (revision 12167) @@ -0,0 +1,234 @@ +/** + * C Implementation: tap_psMetadataItemCompare + * + * Description: Tests for psMetadataItemCompare + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + +void testItemCompare(void); + +int main (void) +{ + plan_tests(22); + + note("psMetadataItemCompare() tests"); + + testItemCompare(); + + done(); +} + +void testItemCompare(void) +{ + note(" >>>Test 1: psMetadataItemCompare"); + + psMetadataItem *compare = NULL; + psMetadataItem *template = NULL; + psMetadataItem *itemCopy = NULL; + psMetadataItem *item = psMetadataItemAlloc("Snickers", PS_DATA_BOOL, "No Comment", true) + ; + + //Return false for NULL compare psMetadataItem + { + ok( !psMetadataItemCompare(compare, item), + "psMetadataItemCompare: return false for NULL compare input." ); + } + //Return false for NULL template psMetadataItem + { + ok( !psMetadataItemCompare(item, template), + "psMetadataItemCompare: return false for NULL template input." ) + ; + } + + //Return false for psMetadataItem's with different names + { + template = psMetadataItemAlloc("Milky Way", PS_DATA_BOOL, "No Comment", true) + ; + compare = psMetadataItemAlloc("Snickers", PS_DATA_S32, "No Comment", 1); + ok( !psMetadataItemCompare(template, item), + "psMetadataItemCompare: return false for input with different names.") + ; + } + //Return true for an exact match (copied psMetadataItem) + { + itemCopy = psMetadataItemCopy(item); + ok( psMetadataItemCompare(itemCopy, item), + "psMetadataItemCompare: return true for comparison of identical psMetadataItem's."); + } + + //Return true for psMetadataItem's with different types but otherwise identical + { + ok( psMetadataItemCompare(compare, item), + "psMetadataItemCompare: return true for valid compare of different type."); + } + + //Return true for comparing Bool with F64 + { + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_F64, "No Comment", 1.0000); + ok( psMetadataItemCompare(compare, item), + "psMetadataItemCompare: return false for comparison of F64 to bool." ); + } + //Return true for comparing F64 with Bool + { + ok( psMetadataItemCompare(item, compare), + "psMetadataItemCompare: return false for comparison of bool to F64." ); + } + + //Return true for comparing S32 with F32 of same value + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_S32, "No Comment", 1) + ; + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_F32, "No Comment", 1.00); + ok( psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return true for comparison of S32 to F32." ) + ; + } + //Return true for comparing F32 with S32 of same value + { + ok( psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return true for comparison of F32 to S32." ) + ; + } + + //Return true for comparing U32 with S16 of same value + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_S16, "No Comment", 1) + ; + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_U32, "No Comment", 1); + ok( psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return true for comparison of S16 to U32." ) + ; + } + //Return true for comparing S16 with U32 of same value + { + ok( psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return true for comparison of U32 to S16." ) + ; + } + + //Return true for comparing U8 with U16 of same value + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_U8, "No Comment", 1) + ; + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_U16, "No Comment", 1); + ok( psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return true for comparison of U8 to U16." ) + ; + } + //Return true for comparing U16 with U8 of same value + { + ok( psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return true for comparison of U16 to U8." ) + ; + } + + //Return true for comparing U8 with S8 of same value + { + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_S8, "No Comment", 1); + ok( psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return true for comparison of U8 to S8." ) + ; + } + //Return true for comparing S8 with U8 of same value + { + ok( psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return true for comparison of S8 to U8." ) + ; + } + + //Return false for comparing U8 with S64 of same value + { + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_S64, "No Comment", 1); + ok( !psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return false for comparison of U8 to S64*. " + "*not yet implemented" ) + ; + } + //Return false for comparing S64 with U8 of same value + { + ok( !psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return false for comparison of S64* to U8. " + "*not yet implemented" ) + ; + } + + //Return false for comparing string of different value + { + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_STRING, "No Comment", + "Not Going Anywhere?"); + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_STRING, "No Comment", "For a While?") + ; + ok( !psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return false for comparison of different psString's.") + ; + } + + //Return true for comparing string of same value + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_STRING, "No Comment", + "Not Going Anywhere?") + ; + ok( psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return true for comparison of identical psString's.") + ; + } + + //Return false for comparing string with bool + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_BOOL, "No Comment", false) + ; + ok( !psMetadataItemCompare(compare, template), + "psMetadataItemCompare: return false for comparison of psString with bool.") + ; + } + //Return false for comparing bool with string + { + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_BOOL, "No Comment", false) + ; + ok( !psMetadataItemCompare(template, compare), + "psMetadataItemCompare: return false for comparison of psString with bool.") + ; + } + + //Check for Memory leaks + { + psFree(compare); + psFree(template) + ; + psFree(itemCopy); + psFree(item); + checkMem(); + } +} + + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataItemParse.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataItemParse.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataItemParse.c (revision 12167) @@ -0,0 +1,530 @@ +/** + * C Implementation: tap_psMetadataItemParse + * + * Description: Tests for psMetadataItemParse + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testItemParse(void); + +int main (void) +{ + plan_tests(112); + + note("psMetadataItemParse() tests"); + + testItemParse(); + + done(); +} + +void testItemParse(void) +{ + note(" >>>Test 1: psMetadataItemParse"); + + psMetadataItem *itemBool = psMetadataItemAlloc("bool", PS_DATA_BOOL, "No Comment", true); + psMetadataItem *itemF32 = psMetadataItemAlloc("f32", PS_DATA_F32, "No Comment", 0.00); + psMetadataItem *itemF64 = psMetadataItemAlloc("f64", PS_DATA_F64, "No Comment", 0.50); + psMetadataItem *itemS8 = psMetadataItemAlloc("s8", PS_DATA_S8, "No Comment", 1); + psMetadataItem *itemS16 = psMetadataItemAlloc("s16", PS_DATA_S16, "No Comment", 0); + psMetadataItem *itemS32 = psMetadataItemAlloc("s32", PS_DATA_S32, "No Comment", 1); + psMetadataItem *itemU8 = psMetadataItemAlloc("u8", PS_DATA_U8, "No Comment", 2); + psMetadataItem *itemU16 = psMetadataItemAlloc("u16", PS_DATA_U16, "No Comment", 0); + psMetadataItem *itemU32 = psMetadataItemAlloc("u32", PS_DATA_U32, "No Comment", 1); + psMetadataItem *itemString1 = psMetadataItemAlloc("String", PS_DATA_STRING, "", "true"); + psMetadataItem *itemString2 = psMetadataItemAlloc("String", PS_DATA_STRING, "", "1.666"); + psMetadataItem *itemString11 = psMetadataItemAlloc("String", PS_DATA_STRING, "", "false"); + psMetadataItem *itemUnsupported = psMetadataItemAlloc("s64", PS_DATA_S64, "", 1); + + //TESTS: Bool, F32, F64, S8, S16, S32, U8, U16, U32, String + //BOOL Test + { + //Return false for NULL item + ok ( !psMetadataItemParseBool(NULL), + "psMetadataItemParse: return false in BOOL for NULL psMetadataItem " + "input." ); + //Return false for non-supported type S64 + ok ( !psMetadataItemParseBool(itemUnsupported), + "psMetadataItemParse: return false in BOOL for S64 (unsupported) " + "psMetadataItem input." ); + //Return true for string with "true" + ok ( psMetadataItemParseBool(itemString1), + "psMetadataItemParse: return true in BOOL for string-item with " + "value 'true'." ); + //Return false for string with "false" + ok ( !psMetadataItemParseBool(itemString11), + "psMetadataItemParse: return false in BOOL for string-item with " + "value 'false'." ); + //Return false for F32 value 0.0 + ok ( !psMetadataItemParseBool(itemF32), + "psMetadataItemParse: return false in BOOL for F32-item with " + "value '0.0'." ); + //Return true for F64 value 0.5 + ok ( psMetadataItemParseBool(itemF64), + "psMetadataItemParse: return true in BOOL for F64-item with " + "value '0.5'." ); + //Return true for S8 value 1 + ok ( psMetadataItemParseBool(itemS8), + "psMetadataItemParse: return true in BOOL for S8-item with " + "value '1'." ); + //Return false for S16 value 0 + ok ( !psMetadataItemParseBool(itemS16), + "psMetadataItemParse: return false in BOOL for S16-item with " + "value '0'." ); + //Return true for S32 value 1 + ok ( psMetadataItemParseBool(itemS32), + "psMetadataItemParse: return true in BOOL for S32-item with " + "value '1'." ); + //Return true for U8 value 2 + ok ( psMetadataItemParseBool(itemU8), + "psMetadataItemParse: return true in BOOL for U8-item with " + "value '2'." ); + //Return false for U16 value 0 + ok ( !psMetadataItemParseBool(itemU16), + "psMetadataItemParse: return false in BOOL for U16-item with " + "value '0'." ); + //Return true for U32 value 1 + ok ( psMetadataItemParseBool(itemU32), + "psMetadataItemParse: return true in BOOL for U32-item with " + "value '1'." ); + } + + //F32 Test + { + //Return NaN for NULL item + ok ( isnan(psMetadataItemParseF32(NULL)), + "psMetadataItemParse: return NaN for NULL psMetadataItem input." ); + //Return NaN for non-supported type S64 + ok ( isnan(psMetadataItemParseF32(itemUnsupported)), + "psMetadataItemParse: return NaN in F32 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 1.666 for string with "1.666" + ok_float( psMetadataItemParseF32(itemString2), 1.666, + "psMetadataItemParse: return 1.666 in F32 for string-item with " + "value '1.666'." ); + //Return 0.0 for F32 value 0.0 + ok_float( psMetadataItemParseF32(itemF32), 0.0, + "psMetadataItemParse: return 0.0 in F32 for F32-item with " + "value '0.0'." ); + //Return 0.5 for F64 value 0.5 + ok_float( psMetadataItemParseF32(itemF64), 0.5, + "psMetadataItemParse: return 0.5 in F32 for F64-item with " + "value '0.5'." ); + //Return 1.0 for S8 value 1 + ok_float( psMetadataItemParseF32(itemS8), 1.0, + "psMetadataItemParse: return 1.0 in F32 for S8-item with " + "value '1'." ); + //Return 0.0 for S16 value 0 + ok_float( psMetadataItemParseF32(itemS16), 0.0, + "psMetadataItemParse: return 0.0 in F32 for S16-item with " + "value '0'." ); + //Return 1.0 for S32 value 1 + ok_float( psMetadataItemParseF32(itemS32), 1.0, + "psMetadataItemParse: return 1.0 in F32 for S32-item with " + "value '1'." ); + //Return 2.0 for U8 value 2 + ok_float( psMetadataItemParseF32(itemU8), 2.0, + "psMetadataItemParse: return 2.0 in F32 for U8-item with " + "value '2'." ); + //Return 0.0 for U16 value 0 + ok_float( psMetadataItemParseF32(itemU16), 0.0, + "psMetadataItemParse: return 0.0 in F32 for U16-item with " + "value '0'." ); + //Return 1.0 for U32 value 1 + ok_float( psMetadataItemParseF32(itemU32), 1.0, + "psMetadataItemParse: return 1.0 in F32 for U32-item with " + "value '1'." ); + } + + //F64 Test + { + //Return NaN for NULL item + ok ( isnan(psMetadataItemParseF64(NULL)), + "psMetadataItemParse: return NaN for NULL psMetadataItem input." ); + //Return NaN for non-supported type S64 + ok ( isnan(psMetadataItemParseF64(itemUnsupported)), + "psMetadataItemParse: return NaN in F64 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 1.666 for string with "1.666" + ok_double_tol( psMetadataItemParseF64(itemString2), 1.666, 0.00001, + "psMetadataItemParse: return 1.666 in F64 for string-item with " + "value '1.666'." ); + //Return 0.0 for F32 value 0.0 + ok_double( psMetadataItemParseF64(itemF32), 0.0, + "psMetadataItemParse: return 0.0 in F64 for F32-item with " + "value '0.0'." ); + //Return 0.5 for F64 value 0.5 + ok_double( psMetadataItemParseF64(itemF64), 0.5, + "psMetadataItemParse: return 0.5 in F64 for F64-item with " + "value '0.5'." ); + //Return 1.0 for S8 value 1 + ok_double( psMetadataItemParseF64(itemS8), 1.0, + "psMetadataItemParse: return 1.0 in F64 for S8-item with " + "value '1'." ); + //Return 0.0 for S16 value 0 + ok_double( psMetadataItemParseF64(itemS16), 0.0, + "psMetadataItemParse: return 0.0 in F64 for S16-item with " + "value '0'." ); + //Return 1.0 for S32 value 1 + ok_double( psMetadataItemParseF64(itemS32), 1.0, + "psMetadataItemParse: return 1.0 in F64 for S32-item with " + "value '1'." ); + //Return 2.0 for U8 value 2 + ok_double( psMetadataItemParseF64(itemU8), 2.0, + "psMetadataItemParse: return 2.0 in F64 for U8-item with " + "value '2'." ); + //Return 0.0 for U16 value 0 + ok_double( psMetadataItemParseF64(itemU16), 0.0, + "psMetadataItemParse: return 0.0 in F64 for U16-item with " + "value '0'." ); + //Return 1.0 for U32 value 1 + ok_double( psMetadataItemParseF64(itemU32), 1.0, + "psMetadataItemParse: return 1.0 in F64 for U32-item with " + "value '1'." ); + } + + //S8 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseS8(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseS8(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in S8 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseS8(itemString2) == 1, + "psMetadataItemParse: return 1 in S8 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseS8(itemF32) == 0, + "psMetadataItemParse: return 0 in S8 for F32-item with " + "value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseS8(itemF64) == 0, + "psMetadataItemParse: return 0 in S8 for F64-item with " + "value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseS8(itemS8) == 1, + "psMetadataItemParse: return 1 in S8 for S8-item with " + "value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseS8(itemS16) == 0, + "psMetadataItemParse: return 0 in S8 for S16-item with " + "value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseS8(itemS32) == 1, + "psMetadataItemParse: return 1 in S8 for S32-item with " + "value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseS8(itemU8) == 2, + "psMetadataItemParse: return 2 in S8 for U8-item with " + "value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseS8(itemU16) == 0, + "psMetadataItemParse: return 0 in S8 for U16-item with " + "value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseS8(itemU32) == 1, + "psMetadataItemParse: return 1 in S8 for U32-item with " + "value '1'." ); + } + + //S16 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseS16(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseS16(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in S16 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseS16(itemString2) == 1, + "psMetadataItemParse: return 1 in S16 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseS16(itemF32) == 0, + "psMetadataItemParse: return 0 in S16 for F32-item with value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseS16(itemF64) == 0, + "psMetadataItemParse: return 0 in S16 for F64-item with value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseS16(itemS8) == 1, + "psMetadataItemParse: return 1 in S16 for S8-item with value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseS16(itemS16) == 0, + "psMetadataItemParse: return 0 in S16 for S16-item with value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseS16(itemS32) == 1, + "psMetadataItemParse: return 1 in S16 for S32-item with value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseS16(itemU8) == 2, + "psMetadataItemParse: return 2 in S16 for U8-item with value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseS16(itemU16) == 0, + "psMetadataItemParse: return 0 in S16 for U16-item with value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseS16(itemU32) == 1, + "psMetadataItemParse: return 1 in S16 for U32-item with value '1'." ); + } + + //S32 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseS32(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseS32(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in S32 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseS32(itemString2) == 1, + "psMetadataItemParse: return 1 in S32 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseS32(itemF32) == 0, + "psMetadataItemParse: return 0 in S32 for F32-item with value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseS32(itemF64) == 0, + "psMetadataItemParse: return 0 in S32 for F64-item with value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseS32(itemS8) == 1, + "psMetadataItemParse: return 1 in S32 for S8-item with value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseS32(itemS16) == 0, + "psMetadataItemParse: return 0 in S32 for S16-item with value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseS32(itemS32) == 1, + "psMetadataItemParse: return 1 in S32 for S32-item with value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseS32(itemU8) == 2, + "psMetadataItemParse: return 2 in S32 for U8-item with value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseS32(itemU16) == 0, + "psMetadataItemParse: return 0 in S32 for U16-item with value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseS32(itemU32) == 1, + "psMetadataItemParse: return 1 in S32 for U32-item with value '1'." ); + } + + //U8 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseU8(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseU8(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in U8 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseU8(itemString2) == 1, + "psMetadataItemParse: return 1 in U8 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseU8(itemF32) == 0, + "psMetadataItemParse: return 0 in U8 for F32-item with value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseU8(itemF64) == 0, + "psMetadataItemParse: return 0 in U8 for F64-item with value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseU8(itemS8) == 1, + "psMetadataItemParse: return 1 in U8 for S8-item with value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseU8(itemS16) == 0, + "psMetadataItemParse: return 0 in U8 for S16-item with value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseU8(itemS32) == 1, + "psMetadataItemParse: return 1 in U8 for S32-item with value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseU8(itemU8) == 2, + "psMetadataItemParse: return 2 in U8 for U8-item with value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseU8(itemU16) == 0, + "psMetadataItemParse: return 0 in U8 for U16-item with value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseU8(itemU32) == 1, + "psMetadataItemParse: return 1 in U8 for U32-item with value '1'." ); + } + + //U16 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseU16(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseU16(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in U16 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseU16(itemString2) == 1, + "psMetadataItemParse: return 1 in U16 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseU16(itemF32) == 0, + "psMetadataItemParse: return 0 in U16 for F32-item with value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseU16(itemF64) == 0, + "psMetadataItemParse: return 0 in U16 for F64-item with value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseU16(itemS8) == 1, + "psMetadataItemParse: return 1 in U16 for S8-item with value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseU16(itemS16) == 0, + "psMetadataItemParse: return 0 in S8 for S16-item with value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseU16(itemS32) == 1, + "psMetadataItemParse: return 1 in U16 for S32-item with value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseU16(itemU8) == 2, + "psMetadataItemParse: return 2 in U16 for U8-item with value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseU16(itemU16) == 0, + "psMetadataItemParse: return 0 in U16 for U16-item with value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseU16(itemU32) == 1, + "psMetadataItemParse: return 1 in U16 for U32-item with value '1'." ); + } + + //U32 Test + { + //Return 0 for NULL item + ok ( psMetadataItemParseU32(NULL) == 0, + "psMetadataItemParse: return 0 for NULL psMetadataItem input." ); + //Return 0 for non-supported type S64 + ok ( psMetadataItemParseU32(itemUnsupported) == 0, + "psMetadataItemParse: return 0 in U32 for S64 (unsupported) " + "psMetadataItem input." ); + //Return 2 for string with "1.666" + ok ( psMetadataItemParseU32(itemString2) == 1, + "psMetadataItemParse: return 1 in U32 for string-item with " + "value '1.666'." ); + //Return 0 for F32 value 0.0 + ok ( psMetadataItemParseU32(itemF32) == 0, + "psMetadataItemParse: return 0 in U32 for F32-item with value '0.0'." ); + //Return 1 for F64 value 0.5 + ok ( psMetadataItemParseU32(itemF64) == 0, + "psMetadataItemParse: return 0 in U32 for F64-item with value '0.5'." ); + //Return 1 for S8 value 1 + ok ( psMetadataItemParseU32(itemS8) == 1, + "psMetadataItemParse: return 1 in U32 for S8-item with value '1'." ); + //Return 0 for S16 value 0 + ok ( psMetadataItemParseU32(itemS16) == 0, + "psMetadataItemParse: return 0 in U32 for S16-item with value '0'." ); + //Return 1 for S32 value 1 + ok ( psMetadataItemParseU32(itemS32) == 1, + "psMetadataItemParse: return 1 in U32 for S32-item with value '1'." ); + //Return 2 for U8 value 2 + ok ( psMetadataItemParseU32(itemU8) == 2, + "psMetadataItemParse: return 2 in U32 for U8-item with value '2'." ); + //Return 0 for U16 value 0 + ok ( psMetadataItemParseU32(itemU16) == 0, + "psMetadataItemParse: return 0 in U32 for U16-item with value '0'." ); + //Return 1 for U32 value 1 + ok ( psMetadataItemParseU32(itemU32) == 1, + "psMetadataItemParse: return 1 in U32 for U32-item with value '1'." ); + } + + //STRING Test + { + //Return NULL for NULL item + ok ( psMetadataItemParseString(NULL) == NULL, + "psMetadataItemParse: return NULL for NULL STRING psMetadataItem " + "input." ); + //Return NULL for non-supported type S64 + ok ( psMetadataItemParseString(itemUnsupported) == NULL, + "psMetadataItemParse: return NULL in STRING for S64 (unsupported)" + " psMetadataItem input." ); + //Return "true" for STRING of value "true" + psString tempString = psMetadataItemParseString(itemString1); + ok_strn( tempString, "true", 6, + "psMetadataItemParse: return 'true' in STRING for STRING with " + "value 'true'." ); + psFree(tempString); + + //Return 0.000000 for F32 of value 0.000000 + tempString = psMetadataItemParseString(itemF32); + ok_strn( tempString, "0.000000", 4, + "psMetadataItemParse: return '0.000000' in STRING for F32 with " + "value '0.000000'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 0.500000 for F64 value 0.5 + tempString = psMetadataItemParseString(itemF64); + ok_strn( tempString, "0.500000", 10, + "psMetadataItemParse: return '0.500000' in STRING for F64 with " + "value '0.5'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 1 for S8 value 1 + tempString = psMetadataItemParseString(itemS8); + ok_strn( tempString, "1", 3, + "psMetadataItemParse: return '1' in STRING for S8 with " + "value '1'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 0 for S16 value 0 + tempString = psMetadataItemParseString(itemS16); + ok_strn( tempString, "0", 3, + "psMetadataItemParse: return '0' in STRING for S8 with " + "value '0'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 1 for S32 value 1 + tempString = psMetadataItemParseString(itemS32); + ok_strn( tempString, "1", 3, + "psMetadataItemParse: return '1' in STRING for S8 with " + "value '1'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 2 for U8 value 2 + tempString = psMetadataItemParseString(itemU8); + ok_strn( tempString, "2", 3, + "psMetadataItemParse: return '2' in STRING for S8 with " + "value '2'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 0 for U16 value 0 + tempString = psMetadataItemParseString(itemU16); + ok_strn( tempString, "0", 3, + "psMetadataItemParse: return '0' in STRING for S8 with " + "value '0'. (actual result=%s)", tempString); + psFree(tempString); + + //Return 1 for U32 value 1 + tempString = psMetadataItemParseString(itemU32); + ok_strn( tempString, "1", 3, + "psMetadataItemParse: return '1' in STRING for S8 with " + "value '1'. (actual result=%s)", tempString); + psFree(tempString); + } + + //Check for Memory leaks + { + psFree(itemBool); + psFree(itemF32); + psFree(itemF64); + psFree(itemS8); + psFree(itemS16); + psFree(itemS32); + psFree(itemU8); + psFree(itemU16); + psFree(itemU32); + psFree(itemString1); + psFree(itemString2); + psFree(itemString11); + psFree(itemUnsupported); + checkMem(); + } +} + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadataIterator.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadataIterator.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadataIterator.c (revision 12167) @@ -0,0 +1,316 @@ +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + + +#define NAME1 "SIMPLE" +#define COMMENT1 "Basic FITS?" +#define FLAG1 0 +#define VALUE1 "TRUE" + +#define NAME2 "COMMENT" +#define COMMENT2 "This is a " +#define FLAG2 PS_META_DUPLICATE_OK +#define VALUE2 " comment." + +#define NAME3 "FILENAME" +#define COMMENT3 "File name" +#define FLAG3 0 +#define VALUE3 "abcdef123456.fits" + +#define NAME4 "COMMENT" +#define COMMENT4 " this IS a " +#define FLAG4 PS_META_DUPLICATE_OK +#define VALUE4 "comment too!" + +#define NAME5 "DATE-OBS" +#define COMMENT5 "Observing date, UTC" +#define FLAG5 0 +#define VALUE5 "1978-11-29" + +#define NAME6 "COMMENT" +#define COMMENT6 " another" +#define FLAG6 PS_META_DUPLICATE_OK +#define VALUE6 "comment " + +#define NAME7 "COMMENT" +#define COMMENT7 "This is another comment" +#define FLAG7 PS_META_DUPLICATE_OK +#define VALUE7 "Hello world" + +#define MULTI_NAME "COMMENT" +#define MULTI_NAME1 NAME2 +#define MULTI_NAME2 NAME4 +#define MULTI_NAME3 NAME6 +#define MULTI_NAME4 NAME7 +#define MULTI_COMMENT1 COMMENT2 +#define MULTI_COMMENT2 COMMENT4 +#define MULTI_COMMENT3 COMMENT6 +#define MULTI_COMMENT4 COMMENT7 +#define MULTI_VALUE1 VALUE2 +#define MULTI_VALUE2 VALUE4 +#define MULTI_VALUE3 VALUE6 +#define MULTI_VALUE4 VALUE7 + +// Generate a dummy metadata +static psMetadata *mdGenerate(void) +{ + psMetadata *md = psMetadataAlloc(); + + // Something like a FITS header + psMetadataAddStr(md, PS_LIST_TAIL, NAME1, FLAG1, COMMENT1, VALUE1); + psMetadataAddStr(md, PS_LIST_TAIL, NAME2, FLAG2, COMMENT2, VALUE2); + psMetadataAddStr(md, PS_LIST_TAIL, NAME3, FLAG3, COMMENT3, VALUE3); + psMetadataAddStr(md, PS_LIST_TAIL, NAME4, FLAG4, COMMENT4, VALUE4); + psMetadataAddStr(md, PS_LIST_TAIL, NAME5, FLAG5, COMMENT5, VALUE5); + psMetadataAddStr(md, PS_LIST_TAIL, NAME6, FLAG6, COMMENT6, VALUE6); + psMetadataAddStr(md, PS_LIST_TAIL, NAME7, FLAG7, COMMENT7, VALUE7); + + return md; +} + +// Function to perform iteration +typedef psMetadataItem *(*iterFunc)(psMetadataIterator *iter); + + +// Test the iteration by iterating once and checking the name, comment, and data +static void testIteration(iterFunc function, // Function to use to iterate + psMetadataIterator *iterator, // The iterator + const char *name, // Name of the item + const char *comment, // Comment for the item + const char *value // Value for the item + ) +{ + psMetadataItem *item = function(iterator); + ok(item, "item = %x", item); + skip_start(!item, 4, "Skipping 4 tests because iteration failed"); + ok(strcmp(item->name, name) == 0, "item->name = %s", item->name); + ok(strcmp(item->comment, comment) == 0, "item->comment = %s", item->comment); + ok(item->type == PS_DATA_STRING, "item->type = %x", item->type); + skip_start(item->type != PS_DATA_STRING, 1, "Skipping 1 test because the item has incorrect type"); + ok(strcmp(item->data.V, value) == 0, "item->data.V = %s", item->data.V); + skip_end(); + skip_end(); + + return; +} + + +int main (void) +{ + plan_tests(242); + + note("psMetadataIterator tests"); + + { + note("No regular expressions, forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 35, "Skipping 35 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME1, COMMENT1, VALUE1); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME2, COMMENT2, VALUE2); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME3, COMMENT3, VALUE3); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME5, COMMENT5, VALUE5); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME6, COMMENT6, VALUE6); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME7, COMMENT7, VALUE7); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("No regular expressions, backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_TAIL, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 35, "Skipping 35 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME7, COMMENT7, VALUE7); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME6, COMMENT6, VALUE6); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME5, COMMENT5, VALUE5); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME3, COMMENT3, VALUE3); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME2, COMMENT2, VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME1, COMMENT1, VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("No regular expressions, jumping in halfway through (using allocator), forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, 3, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME5, COMMENT5, VALUE5); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME6, COMMENT6, VALUE6); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME7, COMMENT7, VALUE7); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("No regular expressions, jumping in halfway through (using allocator), backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, -4, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 15, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME3, COMMENT3, VALUE3); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME2, COMMENT2, VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME1, COMMENT1, VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("No regular expressions, jumping in halfway through (using set), forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + psMetadataIteratorSet(iter, 3); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME5, COMMENT5, VALUE5); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME6, COMMENT6, VALUE6); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, NAME7, COMMENT7, VALUE7); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("No regular expressions, jumping in halfway through (using set), backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + ok(iter, "iter = %x", iter); + skip_start(!iter, 15, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + psMetadataIteratorSet(iter, -4); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME4, COMMENT4, VALUE4); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME3, COMMENT3, VALUE3); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME2, COMMENT2, VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, NAME1, COMMENT1, VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME1, MULTI_COMMENT1, MULTI_VALUE1); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME2, MULTI_COMMENT2, MULTI_VALUE2); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME3, MULTI_COMMENT3, MULTI_VALUE3); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME4, MULTI_COMMENT4, MULTI_VALUE4); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_TAIL, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME4, MULTI_COMMENT4, MULTI_VALUE4); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME3, MULTI_COMMENT3, MULTI_VALUE3); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME2, MULTI_COMMENT2, MULTI_VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME1, MULTI_COMMENT1, MULTI_VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, jumping in halfway through (using allocator), forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, 2, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME3, MULTI_COMMENT3, MULTI_VALUE3); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME4, MULTI_COMMENT4, MULTI_VALUE4); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, jumping in halfway through (using allocator), backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, -3, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME2, MULTI_COMMENT2, MULTI_VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME1, MULTI_COMMENT1, MULTI_VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, jumping in halfway through (using set), forwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + psMetadataIteratorSet(iter, 2); + + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME3, MULTI_COMMENT3, MULTI_VALUE3); + testIteration((iterFunc)psMetadataGetAndIncrement, iter, MULTI_NAME4, MULTI_COMMENT4, MULTI_VALUE4); + + skip_end(); + psFree(iter); + psFree(md); + } + + { + note("With regular expressions, jumping in halfway through (using set), backwards"); + psMetadata *md = mdGenerate(); + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "^" MULTI_NAME "$"); + ok(iter, "iter = %x", iter); + skip_start(!iter, 20, "Skipping 20 tests because psMetadataIteratorAlloc failed"); + psMetadataIteratorSet(iter, -3); + + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME2, MULTI_COMMENT2, MULTI_VALUE2); + testIteration((iterFunc)psMetadataGetAndDecrement, iter, MULTI_NAME1, MULTI_COMMENT1, MULTI_VALUE1); + + skip_end(); + psFree(iter); + psFree(md); + } + + + return exit_status(); +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadata_copying.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadata_copying.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadata_copying.c (revision 12167) @@ -0,0 +1,497 @@ +/** + * C Implementation: tap_psMetadata_copying + * + * Description: Tests for psMetadataCopy, psMetadataItemCopy, & psMetadataItemSupplement. + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testMetadataCopy(void); +void testMetadataItemCopy(void); +void testMetadataItemTransfer(void); + +int main(void) +{ + psLogSetFormat("HLNM"); + plan_tests(36); + + note("psMetadataCopy and psMetadataItemCopy tests"); + + testMetadataCopy(); + testMetadataItemCopy(); + testMetadataItemTransfer(); + + done(); +} + +void testMetadataCopy(void) +{ + note(" >>>Test 1: psMetadataCopy"); + psMetadata *in = NULL; + psMetadata *out = NULL; + psMetadataItem *tempItem = NULL; + psMetadataItem *outItem = NULL; + psMetadataItem *inItem = NULL; + psMetadata *outTest = NULL; + + //Return NULL for NULL psMetadata input + { + outTest = psMetadataCopy(out, NULL); + ok( outTest == NULL, + "psMetadataCopy: return NULL for NULL input metadata."); + } + //Return allocated out for NULL psMetadata input (with allocated out) + { + out = psMetadataAlloc(); + outTest = psMetadataCopy(out, NULL); + ok( outTest == NULL, + "psMetadataCopy: return out for NULL input metadata."); + psFree(out); + out = NULL; + } + //Return NULL for attempt to copy item of unsupported data type - NULL out metadata + psMetadataItem *notype = NULL; + { + in = psMetadataAlloc(); + psMetadataAddS32(in, PS_LIST_HEAD, "S32", 0, "", 1); + notype = psMetadataGet(in, PS_LIST_HEAD); + notype->type = -1; + outTest = psMetadataCopy(out, in); + ok( outTest == NULL, + "psMetadataCopy: return NULL for metadata with item of bad type."); + psFree(out); + out = NULL; + } + //Return NULL for attempt to copy item of unsupported data type - allocated out metadata + { + out = psMetadataAlloc(); + psMetadataAddS32(out, PS_LIST_TAIL, "S32", 0, "", 2); + outTest = psMetadataCopy(out, in); + ok( outTest == NULL, + "psMetadataCopy: return NULL for metadata with item of bad type."); + notype->type = PS_DATA_S32; + psFree(out); + out = NULL; + psFree(in); + in = NULL; + } + + //Return NULL for NULL psMetadata input->list + in = psMetadataAlloc(); + if (in->list != NULL) { + psFree(in->list); + in->list = NULL; + } + { + outTest = psMetadataCopy(out, in); + ok( outTest == NULL, + "psMetadataCopy: return NULL for NULL metadata input->list."); + } + /* //Return NULL for NULL psMetadata input->list (with allocated out) + { + out = psMetadataAlloc(); + out = psMetadataCopy(out, in); + ok( out == NULL, + "psMetadataCopy: return NULL for NULL metadata input->list."); + } + */ + //Return valid (but empty) metadata for NULL out input and empty input metadata. + in->list = psListAlloc(NULL); + psFree(in); + in = psMetadataAlloc(); + if (out != NULL) { + psFree(out); + out = NULL; + } + outTest = psMetadataCopy(out, in); + tempItem = psMetadataGet(in, PS_LIST_HEAD); + { + ok( outTest != NULL && tempItem == NULL, + "psMetadataCopy: return empty copy with no items for empty input metadata."); + psFree(out); + psFree(outTest); + out = NULL; + outTest = NULL; + } + + //Test case: multiCheckItem->type == PS_DATA_METADATA_MULTI + psMetadataAddS32(in, PS_LIST_HEAD, "S32", 0, "", 1); + psMetadataAddS32(in, PS_LIST_TAIL, "S32", PS_META_DUPLICATE_OK, "", 1); + outTest = psMetadataCopy(out, in); + tempItem = psMetadataGet(outTest, PS_LIST_HEAD); + { + ok( tempItem->type == PS_DATA_S32 && tempItem->data.S32 == 1, + "psMetadataCopy: return valid copy for a PS_DATA_METADATA_MULTI entry."); + psFree(outTest); + outTest = NULL; + } + + //Test case: !psMetadataAddItem(out, newItem, PS_LIST_TAIL, flag) + //XXX: doesn't seem to be easily reachable, certainly by the user... Skipping. + + //Test case: simple valid test + psFree(in); + psFree(out); + out = NULL; + in = psMetadataAlloc(); + psMetadataAddS32(in, PS_LIST_HEAD, "S32", 0, "", 666); + outTest = psMetadataCopy(out, in); + outItem = psMetadataGet(outTest, PS_LIST_HEAD); + inItem = psMetadataGet(in, PS_LIST_HEAD); + { + ok( outItem->type == PS_DATA_S32 && outItem->data.S32 == inItem->data.S32 && + (strncmp(inItem->name, outItem->name, 10) == 0), + "psMetadataCopy: return valid copy of metadata with 1 S32 entry."); + } + psFree(outTest); + //Check for Memory Leaks + { + psFree(in); + psFree(out); + checkMem(); + } + +} + +void testMetadataItemCopy(void) +{ + note(" >>>Test 2: psMetadataItemCopy"); + + //Return NULL for NULL input psMetadataItem + { + ok( psMetadataItemCopy(NULL) == NULL, + "psMetadataItemCopy: return NULL for NULL input metadataItem."); + } + + //Test Simple types: Bool, S8, S16, S32, S64, U8, U16, U32, U64, F32, F64, STRING + psMetadataItem *itemBool = psMetadataItemAlloc("itemBool", PS_DATA_BOOL, "", false); + psMetadataItem *itemS8 = psMetadataItemAlloc("itemS8", PS_DATA_S8, "", 1); + psMetadataItem *itemS16 = psMetadataItemAlloc("itemS16", PS_DATA_S16, "", 2); + psMetadataItem *itemS32 = psMetadataItemAlloc("itemS32", PS_DATA_S32, "", 3); + psMetadataItem *itemS64 = psMetadataItemAlloc("itemS64", PS_DATA_S64, "", 4); + psMetadataItem *itemU8 = psMetadataItemAlloc("itemU8", PS_DATA_U8, "", 1); + psMetadataItem *itemU16 = psMetadataItemAlloc("itemU16", PS_DATA_U16, "", 2); + psMetadataItem *itemU32 = psMetadataItemAlloc("itemU32", PS_DATA_U32, "", 3); + psMetadataItem *itemU64 = psMetadataItemAlloc("itemU64", PS_DATA_U64, "", 4); + psMetadataItem *itemF32 = psMetadataItemAlloc("itemF32", PS_DATA_F32, "", 3.0); + psMetadataItem *itemF64 = psMetadataItemAlloc("itemF64", PS_DATA_F64, "", 4.0); + psMetadataItem *itemString = psMetadataItemAlloc("itemString", PS_DATA_STRING, "", "I M STRiNG"); + psMetadataItem *copy = NULL; + //Bool case + { + copy = psMetadataItemCopy(itemBool); + ok( (copy->type == PS_DATA_BOOL && (strncmp(copy->name, "itemBool", 10) == 0) && + !copy->data.B && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of BOOL item."); + psFree(copy); + } + //S8 case + { + copy = psMetadataItemCopy(itemS8); + ok( (copy->type == PS_DATA_S8 && (strncmp(copy->name, "itemS8", 10) == 0) && + copy->data.S8 == 1 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of S8 item."); + psFree(copy); + } + //S16 case + { + copy = psMetadataItemCopy(itemS16); + ok( (copy->type == PS_DATA_S16 && (strncmp(copy->name, "itemS16", 10) == 0) && + copy->data.S16 == 2 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of S16 item."); + psFree(copy); + } + //S32 case + { + copy = psMetadataItemCopy(itemS32); + ok( (copy->type == PS_DATA_S32 && (strncmp(copy->name, "itemS32", 10) == 0) && + copy->data.S32 == 3 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of S32 item."); + psFree(copy); + } + //S64 case + { + copy = psMetadataItemCopy(itemS64); + ok( (copy->type == PS_DATA_S64 && (strncmp(copy->name, "itemS64", 10) == 0) && + copy->data.S64 == 4 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of S64 item."); + psFree(copy); + } + //U8 case + { + copy = psMetadataItemCopy(itemU8); + ok( (copy->type == PS_DATA_U8 && (strncmp(copy->name, "itemU8", 10) == 0) && + copy->data.U8 == 1 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of U8 item."); + psFree(copy); + } + //U16 case + { + copy = psMetadataItemCopy(itemU16); + ok( (copy->type == PS_DATA_U16 && (strncmp(copy->name, "itemU16", 10) == 0) && + copy->data.U16 == 2 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of U16 item."); + psFree(copy); + } + //U32 case + { + copy = psMetadataItemCopy(itemU32); + ok( (copy->type == PS_DATA_U32 && (strncmp(copy->name, "itemU32", 10) == 0) && + copy->data.U32 == 3 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of U32 item."); + psFree(copy); + } + //U64 case + { + copy = psMetadataItemCopy(itemU64); + ok( (copy->type == PS_DATA_U64 && (strncmp(copy->name, "itemU64", 10) == 0) && + copy->data.U64 == 4 && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of U64 item."); + psFree(copy); + } + //F32 case + { + copy = psMetadataItemCopy(itemF32); + ok( (copy->type == PS_DATA_F32 && (strncmp(copy->name, "itemF32", 10) == 0) && + abs(copy->data.F32-3.0) < FLT_EPSILON && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of F32 item."); + psFree(copy); + } + //F64 case + { + copy = psMetadataItemCopy(itemF64); + ok( (copy->type == PS_DATA_F64 && (strncmp(copy->name, "itemF64", 10) == 0) && + abs(copy->data.F64-4.0) < DBL_EPSILON && strncmp(copy->comment, "", 2) == 0), + "psMetadataItemCopy: return valid copy of F64 item."); + psFree(copy); + } + //STRING case + { + copy = psMetadataItemCopy(itemString); + ok( (copy->type == PS_DATA_STRING && (strncmp(copy->name, "itemString", 12) == 0) && + strncmp(copy->data.str,"I M STRiNG",12) == 0 && strncmp(copy->comment,"",2) == 0), + "psMetadataItemCopy: return valid copy of STRING item."); + psFree(copy); + } + + //Test Remaining types: Vector, Time, Metadata, Region + psVector *inV = psVectorAlloc(2, PS_TYPE_S32); + psVectorSet(inV, 0, 666); + psVectorSet(inV, 1, 667); + psMetadataItem *itemVector = psMetadataItemAlloc("itemVector", PS_DATA_VECTOR, "", inV); + psTime *teaTime = psTimeAlloc(PS_TIME_TAI); + teaTime->sec = 1; + teaTime->nsec = 0; + teaTime->leapsecond = true; + psMetadataItem *itemTime = psMetadataItemAlloc("itemTime", PS_DATA_TIME, "", teaTime); + psMetadata *md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "mdS32", 0, "", 666); + psMetadataItem *itemMD = psMetadataItemAlloc("itemMD", PS_DATA_METADATA, "", md); + psRegion *reg = psRegionAlloc(0.0, 2.0, 1.0, 3.0); + psMetadataItem *itemRegion = psMetadataItemAlloc("itemRegion", PS_DATA_REGION, "", reg); + //Vector case + { + copy = psMetadataItemCopy(itemVector); + int int0 = ((psVector*)(copy->data.V))->data.S32[0]; + int int1 = ((psVector*)(copy->data.V))->data.S32[1]; + ok( (copy->type == PS_DATA_VECTOR && (strncmp(copy->name, "itemVector", 12) == 0) + && int0 == 666 && int1 == 667 && strncmp(copy->comment,"",2) == 0), + "psMetadataItemCopy: return valid copy of Vector item."); + psFree(copy); + } + //Vector case - invalid vector item + { + psFree(itemVector->data.V); + itemVector->data.V = NULL; + copy = psMetadataItemCopy(itemVector); + ok( copy == NULL, "psMetadataItemCopy: return NULL for invalid vector item"); + // itemVector->data.V = psVectorAlloc(1, PS_TYPE_S32); + } + //Time case + { + copy = psMetadataItemCopy(itemTime); + int int0 = (int)((psTime*)(copy->data.V))->sec; + int int1 = (int)((psTime*)(copy->data.V))->nsec; + bool leap = ((psTime*)(copy->data.V))->leapsecond; + ok( (copy->type == PS_DATA_TIME && (strncmp(copy->name, "itemTime", 12) == 0) + && int0 == 1 && int1 == 0 && strncmp(copy->comment,"",2) == 0) && leap, + "psMetadataItemCopy: return valid copy of Time item."); + psFree(copy); + } + //Time case - invalid time item + { + psTime *t = psTimeAlloc(PS_TIME_TT); + t->type += 1; + psMetadataItem *itemTime2 = psMetadataItemAlloc("itemTime", PS_DATA_TIME, "", t); + copy = psMetadataItemCopy(itemTime2); + ok( copy != NULL && copy->data.V == NULL, + "psMetadataItemCopy: return non-NULL item for invalid input time item"); + psFree(t); + psFree(copy); + psFree(itemTime2); + } + //Time case - NULL time item + { + psFree(itemTime->data.V); + itemTime->data.V = NULL; + copy = psMetadataItemCopy(itemTime); + ok( copy != NULL && copy->data.V == NULL, + "psMetadataItemCopy: return non-NULL item for NULL input time item"); + // (itemTime->data.V) = psTimeAlloc(PS_TIME_TAI); + psFree(copy); + } + //Metadata case + { + copy = psMetadataItemCopy(itemMD); + psMetadataItem *testItem = NULL; + testItem = psMetadataGet(((psMetadata*)(copy->data.V)), PS_LIST_HEAD); + if (testItem == NULL) + printf("\nError in psMetadataGet.\n"); + ok( copy->type == PS_DATA_METADATA && strncmp(copy->name, "itemMD", 8) == 0 + && (strncmp(copy->comment, "",2) == 0) && testItem->type == PS_DATA_S32 + && (strncmp(testItem->name, "mdS32", 10) == 0) && testItem->data.S32 == 666 + && (strncmp(testItem->comment,"",2) == 0), + "psMetadataItemCopy: return valid copy of Metadata item."); + psFree(copy); + } + //Region case + { + copy = psMetadataItemCopy(itemRegion); + float x0 = ((psRegion*)(copy->data.V))->x0; + float x1 = ((psRegion*)(copy->data.V))->x1; + float y0 = ((psRegion*)(copy->data.V))->y0; + float y1 = ((psRegion*)(copy->data.V))->y1; + ok( (copy->type == PS_DATA_REGION && (strncmp(copy->name, "itemRegion", 12) == 0) + && abs(x0-0.0) < FLT_EPSILON && abs(x1-2.0) < FLT_EPSILON + && abs(y0-1.0) < FLT_EPSILON && abs(y1-3.0) < FLT_EPSILON + && strncmp(copy->comment,"",2) == 0), + "psMetadataItemCopy: return valid copy of Region item."); + psFree(copy); + } + + //Test Unsupported type - (sphere for example) + psSphere *sphere = psSphereAlloc(); + sphere->r = 1.0; + sphere->d = 6.66; + psMetadataItem *itemSphere = psMetadataItemAlloc("itemSphere", PS_DATA_SPHERE, "", sphere); + psFree(sphere); + { + copy = psMetadataItemCopy(itemSphere); + float R = ((psSphere*)(copy->data.V))->r; + float D = ((psSphere*)(copy->data.V))->d; + ok( (copy->type == PS_DATA_SPHERE && (strncmp(copy->name, "itemSphere", 12) == 0) && + abs(R - 1.0) < FLT_EPSILON && abs(D - 6.66) < FLT_EPSILON && + strncmp(copy->comment,"",2) == 0), + "psMetadataItemCopy: return valid copy of SPHERE item."); + psFree(copy); + } + + //Check for Memory Leaks before exit + { + psFree(itemSphere); + psFree(inV); + psFree(teaTime); + psFree(md); + psFree(reg); + psFree(itemBool); + psFree(itemS8); + psFree(itemS16); + psFree(itemS32); + psFree(itemS64); + psFree(itemU8); + psFree(itemU16); + psFree(itemU32); + psFree(itemU64); + psFree(itemF32); + psFree(itemF64); + psFree(itemString); + psFree(itemVector); + psFree(itemTime); + psFree(itemMD); + psFree(itemRegion); + checkMem(); + } + +} + +void testMetadataItemTransfer(void) +{ + note(" >>>Test 3: psMetadataItemSupplement"); + psMetadata *out = psMetadataAlloc(); + psMetadata *in = psMetadataAlloc(); + psString key = psStringAlloc(30); + strncpy(key, "key", 4); + + //Return false for NULL in input + { + ok( !psMetadataItemSupplement(out, NULL, key), + "psMetadataItemSupplement: return false for NULL in metadata."); + } + //Return false for NULL out input + { + ok( !psMetadataItemSupplement(NULL, in, key), + "psMetadataItemSupplement: return false for NULL out metadata."); + } + //Return false for NULL key input + { + ok( !psMetadataItemSupplement(out, in, NULL), + "psMetadataItemSupplement: return false for NULL key string."); + } + psMetadataAddS32(in, PS_LIST_HEAD, "key", PS_META_NO_REPLACE, "", 666); + psMetadataAddF32(out, PS_LIST_HEAD, "out", 0, "", 6.66); + + //Return true for valid inputs + { + bool transfered = psMetadataItemSupplement(out, in, key); + psMetadataItem *item = NULL; + if (transfered) + item = psMetadataGet(out, PS_LIST_TAIL); + ok(transfered && item->type == PS_DATA_S32 && strncmp(item->name, "key", 4) == 0 + && item->data.S32 == 666 && strncmp(item->comment, "", 2) == 0, + "psMetadataItemSupplement: return true for valid inputs."); + } + /* Attempt here was to return false inside of ItemTransfer at psMetadataAddItem. + //Return false for duplicate entry with PS_META_DEFAULT (no duplicates) + { + psMetadataRemoveKey(out, key); + psMetadataItem *item = psMetadataGet(in, PS_LIST_HEAD); + psMetadataAddItem(out, item, PS_LIST_TAIL, PS_META_NO_REPLACE); + ok( !psMetadataItemSupplement(out, in, key), + "psMetadataItemSupplement: return false for duplicate metadataItem."); + } + */ + //Return false for invalid key + { + strncpy(key, "not MY key", 15); + ok( !psMetadataItemSupplement(out, in, key), + "psMetadataItemSupplement: return false for invalid key."); + } + //Return false for invalid metadata + psMetadata *invalid = psMetadataAlloc(); + psFree(invalid->hash); + invalid->hash = NULL; + { + ok( !psMetadataItemSupplement(invalid, in, "key"), + "psMetadataItemSupplement: return false for invalid metadata."); + } + psFree(invalid); + + //Check for Memory Leaks + { + psFree(out); + psFree(in); + psFree(key); + checkMem(); + } + +} Index: /branches/rel-1-1/psLib/test/types/tap_psMetadata_creating.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadata_creating.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadata_creating.c (revision 12167) @@ -0,0 +1,498 @@ +/** +* C Implementation: tap_psMetadata_creating +* +* Description: Tests for psMetadataAlloc, psMetadataItemAlloc's (TYPEs), +* psMemCheckMetadata, psMemCheckMetadataItem, psMetadataAddItem, +* psMetadataIteratorAlloc +* +* +* Author: dRob , (C) 2006 +* +* Copyright: See COPYING file that comes with this distribution +* +*/ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testItemAllocs(void); +void testMDAlloc_AddItem(void); +void testIterAlloc(void); + +int main(void) +{ + plan_tests(42); + + note("psMetadata & psMetadataItem Creation Functions"); + + testItemAllocs(); + testMDAlloc_AddItem(); + testIterAlloc(); + + done(); +} + +void testItemAllocs(void) +{ + note(" >>>Test 1: psMetadataItemAlloc Fxns"); + psMetadataItem *itemStr = psMetadataItemAllocStr("itemStr", "", "itemStr"); + psMetadataItem *itemF32 = psMetadataItemAllocF32("itemF32", "", 6.66); + psMetadataItem *itemF64 = psMetadataItemAllocF64("itemF64", "", 0.666); + psMetadataItem *itemS8 = psMetadataItemAllocS8("itemS8", "", 0); + psMetadataItem *itemS16 = psMetadataItemAllocS16("itemS16", "", 1); + psMetadataItem *itemS32 = psMetadataItemAllocS32("itemS32", "", 2); + psMetadataItem *itemS64 = psMetadataItemAllocS64("itemS64", "", 3); + psMetadataItem *itemU8 = psMetadataItemAllocU8("itemU8", "", 0); + psMetadataItem *itemU16 = psMetadataItemAllocU16("itemU16", "", 1); + psMetadataItem *itemU32 = psMetadataItemAllocU32("itemU32", "", 2); + psMetadataItem *itemU64 = psMetadataItemAllocU64("itemU64", "", 3); + psMetadataItem *itemBool = psMetadataItemAllocBool("itemBool", "", true); + + //First try to free a NULL item + psMetadataItem *nullItem = NULL; + psFree(nullItem); + //Verify correct allocation + //String + { + skip_start(itemStr == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocStr() failed"); + ok(itemStr->type == PS_DATA_STRING + && !strncmp(itemStr->name, "itemStr", 10) + && !strncmp(itemStr->data.V, "itemStr", 10) + && !strncmp(itemStr->comment, "", 2), + "psMetadataItemAllocStr: create valid string item."); + skip_end(); + } + //F32 + { + skip_start(itemF32 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocF32() failed"); + ok(itemF32->type == PS_DATA_F32 + && !strncmp(itemF32->name, "itemF32", 10) + && abs(itemF32->data.F32 - 6.66) < FLT_EPSILON + && !strncmp(itemF32->comment, "", 2), + "psMetadataItemAllocF32: create valid F32 item."); + skip_end(); + } + //F64 + { + skip_start(itemF64 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocF64() failed"); + ok(itemF64->type == PS_DATA_F64 + && !strncmp(itemF64->name, "itemF64", 10) + && abs(itemF64->data.F64 - 0.666) < DBL_EPSILON + && !strncmp(itemF64->comment, "", 2), + "psMetadataItemAllocF64: create valid F64 item."); + skip_end(); + } + //S8 + { + skip_start(itemS8 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocS8() failed"); + ok(itemS8->type == PS_DATA_S8 + && !strncmp(itemS8->name, "itemS8", 10) + && itemS8->data.S8 == 0 + && !strncmp(itemS8->comment, "", 2), + "psMetadataItemAllocS8: create valid S8 item."); + skip_end(); + } + //S16 + { + skip_start(itemS16 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocS16() failed"); + ok(itemS16->type == PS_DATA_S16 + && !strncmp(itemS16->name, "itemS16", 10) + && itemS16->data.S16 == 1 + && !strncmp(itemS16->comment, "", 2), + "psMetadataItemAllocS16: create valid S16 item."); + skip_end(); + } + //S32 + { + skip_start(itemS32 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocS32() failed"); + ok(itemS32->type == PS_DATA_S32 + && !strncmp(itemS32->name, "itemS32", 10) + && itemS32->data.S32 == 2 + && !strncmp(itemS32->comment, "", 2), + "psMetadataItemAllocS32: create valid S32 item."); + skip_end(); + } + //S64 + { + skip_start(itemS64 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocS64() failed"); + ok(itemS64->type == PS_DATA_S64 + && !strncmp(itemS64->name, "itemS64", 10) + && itemS64->data.S64 == 3 + && !strncmp(itemS64->comment, "", 2), + "psMetadataItemAllocS64: create valid S64 item."); + skip_end(); + } + //U8 + { + skip_start(itemU8 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocU8() failed"); + ok(itemU8->type == PS_DATA_U8 + && !strncmp(itemU8->name, "itemU8", 10) + && itemU8->data.U8 == 0 + && !strncmp(itemU8->comment, "", 2), + "psMetadataItemAllocU8: create valid U8 item."); + skip_end(); + } + //U16 + { + skip_start(itemU16 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocU16() failed"); + ok(itemU16->type == PS_DATA_U16 + && !strncmp(itemU16->name, "itemU16", 10) + && itemU16->data.U16 == 1 + && !strncmp(itemU16->comment, "", 2), + "psMetadataItemAllocU16: create valid U16 item."); + skip_end(); + } + //U32 + { + skip_start(itemU32 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocU32() failed"); + ok(itemU32->type == PS_DATA_U32 + && !strncmp(itemU32->name, "itemU32", 10) + && itemU32->data.U32 == 2 + && !strncmp(itemU32->comment, "", 2), + "psMetadataItemAllocU32: create valid U32 item."); + skip_end(); + } + //U64 + { + skip_start(itemU64 == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocU64() failed"); + ok(itemU64->type == PS_DATA_U64 + && !strncmp(itemU64->name, "itemU64", 10) + && itemU64->data.U64 == 3 + && !strncmp(itemU64->comment, "", 2), + "psMetadataItemAllocU64: create valid U64 item."); + skip_end(); + } + //Bool + { + skip_start(itemBool == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocBool() failed"); + ok(itemBool->type == PS_DATA_BOOL + && !strncmp(itemBool->name, "itemBool", 10) + && itemBool->data.B + && !strncmp(itemBool->comment, "", 2), + "psMetadataItemAllocBool: create valid Bool item."); + skip_end(); + } + + //Allocate a pointer. Example= psSphere + { + psSphere *s = psSphereAlloc(); + s->r = 1.1; + s->d = 2.1; + psMetadataItem *itemPtr = psMetadataItemAllocPtr("itemPtr", PS_DATA_SPHERE, "", s); + skip_start(itemPtr == NULL, 1, + "Skipping 1 tests because psMetadataItemAllocPtr() failed"); + float r = ((psSphere*)(itemPtr->data.V))->r; + float d = ((psSphere*)(itemPtr->data.V))->d; + ok( itemPtr->type == PS_DATA_SPHERE + && !strncmp(itemPtr->name, "itemPtr", 10) + && abs(r-1.1) < FLT_EPSILON && abs(d-2.1) < FLT_EPSILON + && !strncmp(itemPtr->comment, "", 2), + "psMetadataItemAllocPtr: create valid ptr (psSphere) item."); + skip_end(); + psFree(s); + psFree(itemPtr); + } + + //Try to Allocate an unsupported type with AllocV + { + psMetadataItem *itemNULL = NULL; + psLine *line = psLineAlloc(2); + itemNULL = psMetadataItemAlloc("itemNULL", PS_DATA_LINE, NULL, line); + ok( itemNULL == NULL, + "psMetadataItemAlloc: return NULL for unsupported type."); + psFree(line); + } + + //Now Allocate the item with Alloc and test MemCheck for it's type. + { + psMetadataItem *itemAllocV = psMetadataItemAlloc("itemAllocV", PS_DATA_S32, NULL, 4); + skip_start(itemAllocV == NULL, 2, + "Skipping 2 tests because psMetadataItemAllocV() failed"); + ok (itemAllocV->type == PS_DATA_S32 + && !strncmp(itemAllocV->name, "itemAllocV", 10) + && itemAllocV->data.S32 == 4 + && !strncmp(itemAllocV->comment, "", 2), + "psMetadataItemAlloc: create valid S32 item."); + ok ( psMemCheckMetadataItem(itemAllocV), + "psMemCheckMetadataItem: return true for valid MetadataItem."); + skip_end(); + psFree(itemAllocV); + } + + //Make sure MemCheckItem worked. Try primitive type. Expect false. + { + int j = 2; + ok( !psMemCheckMetadataItem(&j), + "psMemCheckMetadataItem: return false for non-MetadataItem input."); + } + + //Check for Memory Leaks + { + psFree(itemStr); + psFree(itemF32); + psFree(itemF64); + psFree(itemS8); + psFree(itemS16); + psFree(itemS32); + psFree(itemS64); + psFree(itemU8); + psFree(itemU16); + psFree(itemU32); + psFree(itemU64); + psFree(itemBool); + checkMem(); + } + +} + +void testMDAlloc_AddItem(void) +{ + note(" >>>Test 2: psMetadataAlloc & psMetadataAdd Fxns"); + psMetadata *md = NULL; + md = psMetadataAlloc(); + psMetadata *md1 = psMetadataAlloc(); + psMetadata *md2 = psMetadataAlloc(); + //test MemCheck for a valid psMetadata + { + ok( psMemCheckMetadata(md), + "psMemCheckMetadata: return true for valid Metadata."); + } + //Make sure MemCheck worked. Try primitive type. Expect false. + { + int j = 2; + ok( !psMemCheckMetadata(&j), + "psMemCheckMetadata: return false for non-Metadata input."); + } + //Return false for attempt to add a psMetadataItem with no name. + { + ok( !psMetadataAdd(md1, PS_LIST_HEAD, NULL, PS_DATA_S32, "", 1), + "psMetadataAdd: return false for adding item with no name."); + } + psFree(md1); + md1 = psMetadataAlloc(); + + //Return false for NULL metadata input + psMetadataItem *item = psMetadataItemAllocBool("item", "", true); + { + ok( !psMetadataAddItem(NULL, item, PS_LIST_HEAD, PS_META_DEFAULT), + "psMetadataAddItem: return false for NULL metadata input."); + } + //Return false for metadata with NULL hash + psFree(md1->hash); + md1->hash = NULL; + { + ok( !psMetadataAddItem(md1, item, PS_LIST_HEAD, PS_META_DEFAULT), + "psMetadataAddItem: return false for metadata with no hash."); + } + psFree(md1); + //Return false for metadata with NULL list + psFree(md2->list); + md2->list = NULL; + { + ok( !psMetadataAddItem(md2, item, PS_LIST_HEAD, PS_META_DEFAULT), + "psMetadataAddItem: return false for metadata with no list."); + } + psFree(md2); + //Return false for NULL psMetadataItem input + { + ok( !psMetadataAddItem(md, NULL, PS_LIST_HEAD, PS_META_DEFAULT), + "psMetadataAddItem: return false for NULL item input."); + } + //Return false for psMetadataItem with NULL name + psFree(item->name); + item->name = NULL; + { + ok( !psMetadataAddItem(md, item, PS_LIST_HEAD, PS_META_DEFAULT), + "psMetadataAddItem: return false for item with no name."); + } + psFree(item); + + psMetadata *itemMD = psMetadataAlloc(); + psMetadataAddS32(itemMD, PS_LIST_HEAD, "s", PS_META_DUPLICATE_OK, "", 2); + psMetadataItem *item2 = psMetadataItemAllocS32("s", "", 2); + + //Return true for addition of multi + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_DUPLICATE_OK), + "psMetadataAddItem: return true for addition of PS_DATA_METADATA_MULTI."); + } + psFree(item2); + psFree(itemMD); + + //Existing entry with duplicate key found. + psMetadataAddS32(md, PS_LIST_HEAD, "S32", 0, "", 1); + item2 = psMetadataItemAllocS32("S32", "", 1); + //FLAG = PS_META_REPLACE + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_REPLACE), + "psMetadataAddItem: return true for PS_META_REPLACE flag."); + } + //FLAG = PS_META_DUPLICATE_OK + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_DUPLICATE_OK), + "psMetadataAddItem: return true for PS_META_DUPLICATE_OK flag."); + } + /* SEE BELOW. TEST CASE REDONE b/c item2 in md was already a MULTI + //FLAG = PS_META_NO_REPLACE + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_NO_REPLACE), + "psMetadataAddItem: return true for PS_META_NO_REPLACE flag."); + } + */ + //FLAG = PS_META_DEFAULT + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_DEFAULT), + "psMetadataAddItem: return false for PS_META_DEFAULT flag."); + } + + //Return false for attempting to add an element twice with flag NO_REPLACE + { + psMetadata *norep = psMetadataAlloc(); + psMetadataAddS32(norep, PS_LIST_HEAD, "S32", 0, "", 1); + psMetadataItem *item666 = psMetadataItemAllocS32("S32", "", 1); + ok( psMetadataAddItem(norep, item666, PS_LIST_TAIL, PS_META_NO_REPLACE), + "psMetadataAddItem: return true for PS_META_NO_REPLACE flag."); + psFree(item666); + psFree(norep); + } + //Return false for bad list location + { + psMetadata *emptymeta = psMetadataAlloc(); + psMetadataItem *item666 = psMetadataItemAllocS32("S32", "", 1); + ok( !psMetadataAddItem(emptymeta, item666, -100, PS_META_NO_REPLACE), + "psMetadataAddItem: return false for invalid list location."); + psFree(item666); + psFree(emptymeta); + } + //Return false for trying to add to MULTI with broken list element. + { + psMetadata *broken_list = psMetadataAlloc(); + psMetadataAddS32(broken_list, PS_LIST_HEAD, "S32", 0, "", 1); + psMetadataAddS32(broken_list, PS_LIST_TAIL, "S32", PS_META_DUPLICATE_OK, "", 1); + psMetadataItem *brokenptr = psMetadataLookup(broken_list, "S32"); + if (brokenptr->type != PS_DATA_METADATA_MULTI) + printf("\nError, Error\n"); + else + { + psFree(brokenptr->data.list); + brokenptr->data.list = NULL; + } + psMetadataItem *item666 = psMetadataItemAllocS32("S32", "", 1); + ok( !psMetadataAddItem(broken_list, item666, PS_LIST_TAIL, PS_META_DUPLICATE_OK), + "psMetadataAddItem: return false for MULTI with NULL list."); + psFree(item666); + psFree(broken_list); + } + + //Attempt to add a MULTI + psFree(item2); + item2 = NULL; + psMetadata *xxx = psMetadataAlloc(); + psMetadataAddS32(xxx, PS_LIST_TAIL, "new S32", 0, "", 1); + item2 = psMetadataItemAllocS32("new S32", "", 1); + psMetadataAddItem(xxx, item2, PS_LIST_TAIL, PS_META_DUPLICATE_OK); + psFree(item2); + item2 = psMetadataLookup(xxx, "new S32"); + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_DUPLICATE_OK), + "psMetadataAddItem: return true for new MULTI item"); + } + //Attempt to add a 2nd reference of a MULTI to the originating metadata container + { + ok( !psMetadataAddItem(xxx, item2, PS_LIST_TAIL, PS_META_NO_REPLACE), + "psMetadataAddItem: return false for attempt to add 2nd reference" + " of a MULTI"); + } + psFree(xxx); + + //No existing entries or duplicates found + item2 = psMetadataItemAllocS32("new", "", 2); + { + ok( psMetadataAddItem(md, item2, PS_LIST_TAIL, PS_META_DUPLICATE_OK), + "psMetadataAddItem: return true for new item."); + } + + //Check for Memory leaks + { + psFree(item2); + psFree(md); + checkMem(); + } +} + +void testIterAlloc(void) +{ + note(" >>>Test 3: psMetadataIteratorAlloc"); + psMetadata *md = psMetadataAlloc(); + psMetadata *md2 = NULL; + psMetadataAddS32(md, PS_LIST_HEAD, "S32_1", PS_META_NO_REPLACE, "", 1); + psMetadataAddS32(md, PS_LIST_TAIL, "S32_2", PS_META_DEFAULT, "", 2); + + psMetadataIterator *iter = NULL; + //Return NULL for NULL metadata input + { + iter = psMetadataIteratorAlloc(md2, PS_LIST_HEAD, NULL); + ok( iter == NULL, + "psMetadataIteratorAlloc: return NULL for NULL metadata input."); + } + //Return NULL for metadata with no List + md2 = psMetadataAlloc(); + psFree(md2->list); + md2->list = NULL; + { + iter = psMetadataIteratorAlloc(md2, PS_LIST_HEAD, NULL); + ok( iter == NULL, + "psMetadataIteratorAlloc: return NULL for metadata with no list."); + } + psFree(md2); + + //Return newly allocated MetadataIterator, regex=NULL + { + iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + ok( iter != NULL, + "psMetadataIteratorAlloc: return valid iterator for valid inputs, regex=NULL."); + } + //Return NULL for attempt to allocate an iterator with unfound regex. + psFree(iter); + iter = NULL; + { + iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "IPP.machines.sky"); + ok( iter == NULL, + "psMetadataIteratorAlloc: return NULL for not-found regex input"); + } + //Return NULL for invalid regex input. + { + iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "IPP.machines.sky\\"); + ok( iter == NULL, + "psMetadataIteratorAlloc: return NULL for invalid regex input"); + } + //Return properly allocated iterator for valid non-null regex input. + { + iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, "S32_"); + ok( iter != NULL, + "psMetadataIteratorAlloc: return valid iterator for valid regex input"); + } + + //Check for Memory leaks + { + psFree(iter); + psFree(md); + checkMem(); + } +} + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadata_manip.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadata_manip.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadata_manip.c (revision 12167) @@ -0,0 +1,477 @@ +/** + * C Implementation: tap_psMetadata_manip + * + * Description: Tests for psMetadataRemove's, psMetadataLookup's (TYPE), + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void testIter(void); +void testLookups(void); +void testRemoves(void); + +int main(void) +{ + plan_tests(48); + + note("psMetadataLookup, Remove, and Iterator Fxns"); + + testLookups(); + testRemoves(); + testIter(); + + done(); +} + +void testLookups(void) +{ + note(" >>>Test 1: psMetadataLookup Functions"); + psMetadata *md = psMetadataAlloc(); + psMetadataAddStr(md, PS_LIST_TAIL, "itemStr", 0, "I am a string", "GNIRTS"); + psMetadataAddBool(md, PS_LIST_TAIL, "itemBool", 0, "I am a boolean", true); + psMetadataAddS8(md, PS_LIST_TAIL, "itemS8", 0, "I am S8", 6); + psMetadataAddS16(md, PS_LIST_TAIL, "itemS16", 0, "I am S16", -666); + psMetadataAddS32(md, PS_LIST_TAIL, "itemS32", 0, "I am a integer", 55); + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", 0, "I am S64", 666); + psMetadataAddU8(md, PS_LIST_TAIL, "itemU8", 0, "I am U8", 6); + psMetadataAddU16(md, PS_LIST_TAIL, "itemU16", 0, "I am U16", 666); + psMetadataAddU32(md, PS_LIST_TAIL, "itemU32", 0, "I am U32", 666); + psMetadataAddU64(md, PS_LIST_TAIL, "itemU64", 0, "I am U64", 666); + psMetadataAddF32(md, PS_LIST_TAIL, "itemF32", 0, NULL, 3.14); + psMetadataAddF64(md, PS_LIST_TAIL, "itemF64", 0, "", 6.28); + psSphere *sphere = psSphereAlloc(); + sphere->r = 6.66; + sphere->d = 666.666; + psMetadataAddPtr(md, PS_LIST_HEAD, "ptr", PS_DATA_SPHERE, "", sphere); + // psMetadataAddPtr(md, PS_LIST_TAIL, "ptr", PS_DATA_METADATA_MULTI, "", sphere); + psTime *time; + time = psTimeAlloc(PS_TIME_TAI); + time->sec = 1000; + time->nsec = 25; + time->leapsecond = true; + psMetadataAddTime(md, PS_LIST_TAIL, "time01", 0, "I am time", time); + psMetadata *newMD = psMetadataAlloc(); + psMetadataAddS32(newMD, PS_LIST_TAIL, "1", 0, "", 666); + psMetadataAddMetadata(md, PS_LIST_TAIL, "metadata7", 0, "I am a metadata", newMD); + + //Lookup Standard number-types (valid cases) + //U8 + { + bool status = false; + psU8 u8 = 0; + u8 = psMetadataLookupU8(&status, md, "itemU8"); + ok( status && u8 == 6, + "psMetadataLookupU8: return correct U8 value on lookup."); + } + //U16 + { + bool status = false; + psU16 u16 = 0; + u16 = psMetadataLookupU16(&status, md, "itemU16"); + ok( status && u16 == 666, + "psMetadataLookupU16: return correct U16 value on lookup."); + } + //U32 + { + bool status = false; + psU32 u32 = 0; + u32 = psMetadataLookupU32(&status, md, "itemU32"); + ok( status && u32 == 666, + "psMetadataLookupU32: return correct U32 value on lookup."); + } + //U64 + { + bool status = false; + psU64 u64 = 0; + u64 = psMetadataLookupU64(&status, md, "itemU64"); + ok( status && u64 == 666, + "psMetadataLookupU64: return correct U64 value on lookup."); + } + //S8 + { + bool status = false; + psS8 s8 = 0; + s8 = psMetadataLookupS8(&status, md, "itemS8"); + ok( status && s8 == 6, + "psMetadataLookupS8: return correct S8 value on lookup."); + } + //S16 + { + bool status = false; + psS16 s16 = 0; + s16 = psMetadataLookupS16(&status, md, "itemS16"); + ok( status && s16 == -666, + "psMetadataLookupS16: return correct S16 value on lookup."); + } + //S32 + { + bool status = false; + psS32 s32 = 0; + s32 = psMetadataLookupS32(&status, md, "itemS32"); + ok( status && s32 == 55, + "psMetadataLookupS32: return correct S32 value on lookup."); + } + //S64 + { + bool status = false; + psS64 s64 = 0; + s64 = psMetadataLookupS64(&status, md, "itemS64"); + ok( status && s64 == 666, + "psMetadataLookupS64: return correct S64 value on lookup."); + } + //F32 + { + bool status = false; + psF32 f32 = 0; + f32 = psMetadataLookupF32(&status, md, "itemF32"); + ok( status && abs(f32 - 3.14) < FLT_EPSILON, + "psMetadataLookupF32: return correct F32 value on lookup."); + } + //F64 + { + bool status = false; + psF64 f64 = 0; + f64 = psMetadataLookupF64(&status, md, "itemF64"); + ok( status && abs(f64 - 6.28) < DBL_EPSILON, + "psMetadataLookupF64: return correct F64 value on lookup."); + } + //Bool + { + bool status = false; + bool stat = false; + stat = psMetadataLookupBool(&status, md, "itemBool"); + ok( status && stat, + "psMetadataLookupBool: return correct Bool value on lookup."); + } + //String + { + bool status = false; + psString str = NULL; + str = psMetadataLookupStr(&status, md, "itemStr"); + ok( status && !strncmp(str, "GNIRTS", 8), + "psMetadataLookupStr: return correct String value on lookup."); + } + //Pointer + { + bool status = false; + psSphere *sph = NULL; + sph = (psSphere*)(psMetadataLookupPtr(&status, md, "ptr")); + ok( status && sph != NULL && abs(sph->r-6.66) < FLT_EPSILON, + "psMetadataLookupPtr: return correct pointer value on lookup."); + } + //Time + { + bool status = false; + psTime *t = NULL; + t = psMetadataLookupTime(&status, md, "time01"); + ok( status && t->sec == 1000, + "psMetadataLookupTime: return correct time value on lookup."); + } + //Metadata + { + bool status = false; + psMetadata *mdtemp = NULL; + mdtemp = psMetadataLookupMetadata(&status, md, "metadata7"); + psMetadataItem *itemtemp = psMetadataGet(mdtemp, PS_LIST_HEAD); + ok( status && itemtemp->type == PS_DATA_S32 && itemtemp->data.S32 == 666, + "psMetadataLookupMD: return correct metadata value on lookup."); + } + + //Try Negatives and non-standard lookup cases + //String - invalid key name + { + bool status = false; + psString str = NULL; + str = psMetadataLookupStr(&status, md, "item"); + ok( !status && str == NULL, + "psMetadataLookupStr: return NULL for incorrect key."); + str = NULL; + str = psMetadataLookupStr(NULL, md, "item"); + ok( str == NULL, + "psMetadataLookupStr: return NULL for incorrect key (& NULL status)."); + } + //String - wrong key-> lookup s8 data + { + bool status = false; + psString str = NULL; + str = psMetadataLookupStr(&status, md, "itemS8"); + ok( !status && str == NULL, + "psMetadataLookupStr: return NULL for incorrect key ."); + str = NULL; + str = psMetadataLookupStr(NULL, md, "itemS8"); + ok( str == NULL, + "psMetadataLookupStr: return NULL for incorrect key (& NULL status)."); + } + //Pointer - invalid key name + { + bool status = false; + psSphere *sph = NULL; + sph = psMetadataLookupPtr(&status, md, "item"); + ok( !status && sph == NULL, + "psMetadataLookupPtr: return NULL for incorrect key."); + } + //Pointer - wrong key -> lookup s8 data + { + bool status = false; + psSphere *sph = NULL; + sph = psMetadataLookupPtr(&status, md, "itemS8"); + ok( !status && sph == NULL, + "psMetadataLookupPtr: return NULL for incorrect key."); + } + + //Pointer** - lookup a PS_DATA_METADATA_MULTI + { + psMetadata *metadata = psMetadataAlloc(); + psMetadataItem *multi = psMetadataItemAlloc("ptr", PS_DATA_METADATA_MULTI, "", NULL); + psMetadataAddItem(metadata, multi, PS_LIST_HEAD, PS_META_DUPLICATE_OK); + psMetadataAddPtr(metadata, PS_LIST_TAIL, "ptr", + PS_DATA_SPHERE | PS_META_DUPLICATE_OK, "", sphere); + psSphere *s = psSphereAlloc(); + s->r = 0.666; + psMetadataAddPtr(metadata, PS_LIST_TAIL, "ptr", PS_DATA_SPHERE | PS_META_DUPLICATE_OK, "", s); + psFree(s); + psMetadataItem *metadataItem = NULL; + metadataItem = psMetadataLookup(metadata, "ptr"); + bool status = false; + psSphere *sph = NULL; + sph = (psSphere*)(psMetadataLookupPtr(&status, metadata, "ptr")); + ok( status && sph != NULL && fabs(sph->r - 6.66) < FLT_EPSILON, + "psMetadataLookupPtr: return correct value on lookup of MULTI item."); + psFree(metadata); + psFree(multi); + } + + //Metadata - invalid key name + { + bool status = false; + psMetadata *met = NULL; + met = psMetadataLookupMetadata(&status, md, "item"); + ok( !status && met == NULL, + "psMetadataLookupMD: return NULL for incorrect key."); + met = NULL; + met = psMetadataLookupMetadata(NULL, md, "item"); + ok( met == NULL, + "psMetadataLookupMD: return NULL for incorrect key (& NULL status)."); + } + //Metadata - wrong key -> lookup s8 data + { + bool status = false; + psMetadata *met = NULL; + met = psMetadataLookupMetadata(&status, md, "itemS8"); + ok( !status && met == NULL, + "psMetadataLookupMD: return NULL for incorrect key (& NULL status)."); + met = NULL; + met = psMetadataLookupMetadata(NULL, md, "itemS8"); + ok( met == NULL, + "psMetadataLookupMD: return NULL for incorrect key."); + } + //Time - invalid key name + { + bool status = false; + psTime *time = NULL; + time = psMetadataLookupTime(&status, md, "item"); + ok( !status && time == NULL, + "psMetadataLookupTime: return NULL for incorrect key."); + time = NULL; + time = psMetadataLookupTime(NULL, md, "item"); + ok( time == NULL, + "psMetadataLookupTime: return NULL for incorrect key (& NULL status)."); + } + //Time - wrong key -> lookup s8 data + { + bool status = false; + psTime *time = NULL; + time = psMetadataLookupTime(&status, md, "itemS8"); + ok( !status && time == NULL, + "psMetadataLookupTime: return NULL for incorrect key."); + time = NULL; + time = psMetadataLookupTime(NULL, md, "itemS8"); + ok( time == NULL, + "psMetadataLookupTime: return NULL for incorrect key (& NULL status)."); + } + + + + //Check for Memory leaks + { + psFree(sphere); + psFree(time); + psFree(newMD); + psFree(md); + checkMem(); + } +} + +void testRemoves(void) +{ + note(" >>>Test 2: psMetadataRemove Functions"); + psMetadata *md = psMetadataAlloc(); + psMetadataAddStr(md, PS_LIST_TAIL, "itemStr", 0, "I am a string", "GNIRTS"); + psMetadataAddBool(md, PS_LIST_TAIL, "itemBool", 0, "I am a boolean", true); + psMetadataAddS8(md, PS_LIST_TAIL, "itemS8", 0, "I am S8", 6); + psMetadataAddS16(md, PS_LIST_TAIL, "itemS16", 0, "I am S16", -666); + psMetadataAddS32(md, PS_LIST_TAIL, "itemS32", 0, "I am a integer", 55); + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", PS_META_DUPLICATE_OK, "I am S64", 666); + psMetadataAddU8(md, PS_LIST_TAIL, "itemU8", 0, "I am U8", 6); + + //psMetadataRemoveKey + { + bool status = psMetadataRemoveKey(md, "itemU8"); + psMetadataItem *temp = psMetadataGet(md, PS_LIST_TAIL); + ok( status && temp->type == PS_DATA_S64, + "psMetadataRemoveKey: return true for valid case."); + } + //psMetadataRemoveIndex + { + bool status = psMetadataRemoveIndex(md, PS_LIST_HEAD); + psMetadataItem *temp = psMetadataGet(md, PS_LIST_HEAD); + ok( status && temp->type == PS_DATA_BOOL, + "psMetadataRemoveIndex: return true for valid case."); + } + //Attempt to remove an incorrect key - Return false + { + ok( !psMetadataRemoveKey(md, "BigDog"), + "psMetadataRemoveKey: return false for incorrect key."); + } + //Attempt to remove an out-of-range index - Return false + { + ok( !psMetadataRemoveIndex(md, 20), + "psMetadataRemoveIndex: return false for incorrect index."); + } + //Attempt to remove an item with NULL name + { + psMetadataItem *temp = psMetadataGet(md, PS_LIST_HEAD); + psFree(temp->name); + temp->name = NULL; + ok( !psMetadataRemoveIndex(md, PS_LIST_HEAD), + "psMetadataRemoveIndex: return false for item with no name."); + } + //Attempt to remove an item with wrong hash table + { + psMetadata *md2 = psMetadataAlloc(); + psMetadataAddBool(md2, PS_LIST_TAIL, "Bool", 0, "I am a boolean", true); + psMetadataAddS8(md2, PS_LIST_TAIL, "S8", 0, "I am S8", 6); + psMetadataAddS16(md2, PS_LIST_TAIL, "S16", 0, "I am S16", -666); + psMetadataAddS32(md2, PS_LIST_TAIL, "S32", 0, "I am a integer", 55); + psMetadataAddS64(md2, PS_LIST_TAIL, "S64", 0, "I am S64", 666); + + psFree(md2->hash); + md2->hash = NULL; + md2->hash = md->hash; + ok( !psMetadataRemoveIndex(md2, PS_LIST_HEAD), + "psMetadataRemoveIndex: return false for item with bad table."); + md2->hash = NULL; + psFree(md2); + } + //Attempt to remove a METADATA_MULTI item by key + { + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", PS_META_DUPLICATE_OK, "I am S64", 667); + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", PS_META_DUPLICATE_OK, "I am S64", 668); + bool status = psMetadataRemoveKey(md, "itemS64"); + psMetadataItem *temp = psMetadataGet(md, PS_LIST_TAIL); + ok( status && temp->type == PS_DATA_S32, + "psMetadataRemoveKey: return true for valid METADATA_MULTI case."); + + } + //Attempt to remove a METADATA_MULTI item by index + { + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", PS_META_DUPLICATE_OK, "I am S64", 667); + psMetadataAddS64(md, PS_LIST_TAIL, "itemS64", PS_META_DUPLICATE_OK, "I am S64", 668); + bool status = psMetadataRemoveIndex(md, PS_LIST_TAIL); + psMetadataItem *temp = psMetadataGet(md, PS_LIST_TAIL); + ok( status && temp->type == PS_DATA_S64, + "psMetadataRemoveIndex: return true for valid METADATA_MULTI case."); + } + + //Check for Memory leaks + { + psFree(md); + checkMem(); + } +} + +void testIter(void) +{ + note(" >>>Test 3: psMetadataIterator Functions"); + psMetadata *md = psMetadataAlloc(); + psMetadataAddS32(md, PS_LIST_HEAD, "S32_1", PS_META_NO_REPLACE, "", 1); + psMetadataAddS32(md, PS_LIST_TAIL, "S32_2", PS_META_NO_REPLACE, "", 2); + psMetadataAddS32(md, PS_LIST_TAIL, "S32_3", PS_META_NO_REPLACE, "", 3); + + psMetadataIterator *iter = NULL; + + //Return NULL in psMetadataGetAnd(In/De)crement for NULL iterator input + { + ok( psMetadataGetAndIncrement(NULL) == NULL, + "psMetadataGetAndIncrement: return NULL for NULL iterator input."); + ok( psMetadataGetAndDecrement(NULL) == NULL, + "psMetadataGetAndDecrement: return NULL for NULL iterator input."); + } + //Return NULL in psMetadataGetAnd(In/De)crement for iterator with no list iterator + psMetadataIterator *iter2 = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + psFree(iter2->iter); + iter2->iter = NULL; + { + ok( psMetadataGetAndIncrement(iter2) == NULL, + "psMetadataGetAndIncrement: return NULL for iterator with no list iterator."); + ok( psMetadataGetAndDecrement(iter2) == NULL, + "psMetadataGetAndDecrement: return NULL for iterator with no list iterator."); + } + psFree(iter2); + + //Return valid iterator for valid inputs, regex= NULL + psMetadataItem *item = NULL; + { + iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + ok( iter != NULL, + "psMetadataIteratorAlloc: return valid iterator for valid inputs, regex=NULL."); + skip_start(iter == NULL, 4, + "Skipping 4 tests because psMetadataIteratorAlloc failed"); + + item = psMetadataGetAndIncrement(iter); + ok( item != NULL, + "psMetadataGetAndIncrement: return valid item for valid iterator input."); + skip_start(item == NULL, 1, + "Skipping 1 tests because psMetadataGetAndIncrement failed"); + ok(item->type == PS_DATA_S32 + && !strncmp(item->name, "S32_1", 7) + && item->data.S32 == 1 + && !strncmp(item->comment, "", 2), + "psMetadataGetAndIncrement: retrieve correct item from valid iterator."); + skip_end(); + + item = psMetadataGetAndDecrement(iter); + ok( item != NULL, + "psMetadataGetAndDecrement: return valid item for valid iterator input."); + skip_start(item == NULL, 1, + "Skipping 1 tests because psMetadataGetAndDecrement failed"); + ok(item->type == PS_DATA_S32 + && !strncmp(item->name, "S32_2", 7) + && item->data.S32 == 2 + && !strncmp(item->comment, "", 2), + "psMetadataGetAndDecrement: retrieve correct item from valid iterator."); + skip_end(); + + skip_end(); + + } + + //Check for Memory leaks + { + psFree(iter); + psFree(md); + checkMem(); + } +} + + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadata_polynomials.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadata_polynomials.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadata_polynomials.c (revision 12167) @@ -0,0 +1,850 @@ +/** + * C Implementation: tap_psMetadata_polynomials + * + * Description: Tests for psPolynomial(2,3,4)D(to/from)MD + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include + +#include "tap.h" +#include "pstap.h" + +void test1Dcase(void); +void test2Dcase(void); +void test3Dcase(void); +void test4Dcase(void); + +int main(void) +{ + plan_tests(89); + + note("psPolynomial(1D, 2D, 3D, & 4D)(to/from)Metadata tests"); + + test1Dcase(); + test2Dcase(); + test3Dcase(); + test4Dcase(); + + done(); +} + + +void test1Dcase(void) +{ + note(" >>>Test 1: psPolynomial1DtoMetadata & psPolynomial1DfromMetadata functions"); + psMetadata *md = psMetadataAlloc(); + psPolynomial1D *p1d = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 1); + p1d->coeff[0] = 1.1; + p1d->coeff[1] = 2.2; + p1d->coeffErr[0] = 0.1; + p1d->coeffErr[1] = 0.2; + + //psPolynomial1DtoMetadata + //Return a valid metadata containing a polynomial-metadata structure + { + note ("example of 1DtoMD using the names not the sequence"); + + ok( psPolynomial1DtoMetadata(md, p1d, "polyMD"), + "psPolynomial1DtoMetadata: return true for valid inputs."); + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + skip_start( polyMDtemp == NULL , 1, + "Skipping 1 tests because psPolynomial1DtoMetadata has errors"); + + bool status; + int nX = psMetadataLookupS32(&status, polyMDtemp, "NORDER_X"); + ok(status, + "psPolynomial1DtoMetadata: found NORDER_X"); + ok(nX == 1, + "psPolynomial1DtoMetadata: NORDER_X is 1"); + + double val; + val = psMetadataLookupF64(&status, polyMDtemp, "VAL_X00"); + ok(status, + "psPolynomial1DtoMetadata: found VAL_X00"); + ok_double(val, 1.1, + "psPolynomial1DtoMetadata: VAL_X00 is %lf", val); + + val = psMetadataLookupF64(&status, polyMDtemp, "VAL_X01"); + ok(status, + "psPolynomial1DtoMetadata: found VAL_X01"); + ok_double(val, 2.2, + "psPolynomial1DtoMetadata: VAL_X01 is %lf", val); + skip_end(); + } + + //Return false for no-name polynomial + { + ok( !psPolynomial1DtoMetadata(md, p1d, ""), + "psPolynomial1DtoMetadata: return false for no-name."); + } + //Return false for NULL-name polynomial + { + ok( !psPolynomial1DtoMetadata(md, p1d, NULL), + "psPolynomial1DtoMetadata: return false for NULL name input."); + } + //Return false for NULL metadata input + { + ok( !psPolynomial1DtoMetadata(NULL, p1d, "polyMD"), + "psPolynomial1DtoMetadata: return false for NULL metadata input."); + } + //Return false for NULL polynomial input + { + ok( !psPolynomial1DtoMetadata(md, NULL, "polyMD"), + "psPolynomial1DtoMetadata: return false for NULL polynomial input."); + } + //Return true for polynomial with 1 element, a constant + { + psPolynomial1D *constPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 0); + constPoly->coeff[0] = 6.66; + ok( psPolynomial1DtoMetadata(md, constPoly, "polyMD"), + "psPolynomial1DtoMetadata: return true for constant polynomial (1 element != 0)."); + psFree(constPoly); + } + //Return false for non-ordinary polynomial + { + psPolynomial1D *p1d1 = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, 1); + p1d1->coeff[0] = 1.1; + ok( !psPolynomial1DtoMetadata(md, p1d1, "polyMD"), + "psPolynomial1DtoMetadata: return false for chebyshev polynomial"); + psFree(p1d1); + } + + //psPolynomial1DfromMetadata Tests + //Return NULL for NULL metadata input. + { + psPolynomial1D *emptyPoly1D = NULL; + emptyPoly1D = psPolynomial1DfromMetadata(NULL); + ok( emptyPoly1D == NULL, + "psPolynomial1DfromMetadata: return NULL for NULL metadata input."); + } + //Get a polynomial from Metadata. + psPolynomial1D *outPoly = NULL; + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + outPoly = psPolynomial1DfromMetadata(polyMDtemp); + { + skip_start( outPoly == NULL, 1, + "Skipping 1 tests because psPolynomial1DfromMetadata has errors."); + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 1 && + abs(outPoly->coeff[0] - 1.1) < DBL_EPSILON, + "psPolynomial1DfromMetadata: return correct polynomial from metadata"); + skip_end(); + } + //Get a polynomial from Metadata with mask[0] == 1. + psFree(outPoly); + outPoly = NULL; + psPolynomial1D *maskPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 0); + maskPoly->coeff[0] = 6.66; + maskPoly->mask[0] = 1; + psMetadata *newmd = psMetadataAlloc(); + psPolynomial1DtoMetadata(newmd, maskPoly, "polyMD"); + psMetadata *polyMask = psMetadataLookupMetadata(NULL, newmd, "polyMD"); + outPoly = psPolynomial1DfromMetadata(polyMask); + { + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 0 && + outPoly->mask[0] == 1, + "psPolynomial1DfromMetadata: return correct polynomial (w/mask) from metadata"); + } + psFree(maskPoly); + psFree(newmd); + //Return NULL for wrong NELEMENTS + psMetadataItem *nElementItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL); + nElementItem->data.S32 -= 1; + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial1DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial1DfromMetadata: " + "return NULL for metadata-polynomial with wrong NELEMENTS"); + } + //Return NULL for missing NELEMENTS + psMetadataRemoveIndex(polyMDtemp, PS_LIST_TAIL); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial1DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial1DfromMetadata: " + "return NULL for metadata-polynomial with no NELEMENTS"); + } + + //Return NULL for polynomial in metadata with no x-order + psMetadataRemoveKey(polyMDtemp, "NORDER_X"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial1DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial1DfromMetadata: " + "return NULL for metadata-polynomial with no x-order"); + } + + //Check for Memory leaks + { + psFree(outPoly); + psFree(p1d); + psFree(md); + checkMem(); + } +} + +void test2Dcase(void) +{ + note(" >>>Test 2: psPolynomial2DtoMetadata & psPolynomial2DfromMetadata functions"); + psMetadata *md = psMetadataAlloc(); + psPolynomial2D *p2d = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 1, 1); + p2d->coeff[0][0] = 1.1; + p2d->coeff[0][1] = 2.2; + p2d->coeff[1][0] = 3.3; + p2d->coeff[1][1] = 4.4; + p2d->coeffErr[0][0] = 0.1; + p2d->coeffErr[0][1] = 0.2; + p2d->coeffErr[1][0] = 0.3; + p2d->coeffErr[1][1] = 0.4; + + //psPolynomial2DtoMetadata + //Return a valid metadata containing a polynomial-metadata structure + { + ok( psPolynomial2DtoMetadata(md, p2d, "polyMD"), + "psPolynomial2DtoMetadata: return true for valid inputs."); + + // psMetadataConfigWrite (md, "test.md"); + + //XXX ok (0, "these tests are relying on the ORDER of the MD components not the NAMES"); + //XXX ok (0, "these seem like irrelevant tests"); + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + skip_start( polyMDtemp == NULL , 1, + "Skipping 1 tests because psPolynomial2DtoMetadata has errors"); + psMetadataItem *polyItem = psMetadataGet(polyMDtemp, 0); + skip_start( polyItem == NULL, 2, + "Skipping 2 tests because psPolynomial2DtoMetadata has errors in order elements"); + ok( !strncmp(polyItem->name, "NORDER_X", 10) && polyItem->data.S32 == 1, + "psPolynomial2DtoMetadata: return correct number of x orders."); + polyItem = psMetadataGet(polyMDtemp, 1); + ok( !strncmp(polyItem->name, "NORDER_Y", 10) && polyItem->data.S32 == 1, + "psPolynomial2DtoMetadata: return correct number of y orders."); + skip_end(); + polyItem = psMetadataGet(polyMDtemp, 2); + skip_start( polyItem == NULL, 2, + "Skipping 2 tests because psPolynomial2DtoMetadata has errors in coeff elements"); + ok( !strncmp(polyItem->name, "VAL_X00_Y00", 14) && + abs(polyItem->data.F64-1.1) < DBL_EPSILON, + "psPolynomial2DtoMetadata: return correct first element."); + polyItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL-1); + ok( !strncmp(polyItem->name, "ERR_X01_Y01", 14) && + abs(polyItem->data.F64-0.4) < DBL_EPSILON, + "psPolynomial2DtoMetadata: return correct last element."); + skip_end(); + skip_end(); + } + + //psPolynomial2DtoMetadata + //Return a valid metadata containing a polynomial-metadata structure + { + note ("example of 2DtoMD using the names not the sequence"); + + ok( psPolynomial2DtoMetadata(md, p2d, "polyMD"), + "psPolynomial2DtoMetadata: return true for valid inputs."); + + // psMetadataConfigWrite (md, "test.md"); + + // of the components. these seem like irrelevant tests. + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + skip_start( polyMDtemp == NULL , 1, + "Skipping 1 tests because psPolynomial2DtoMetadata has errors"); + + bool status; + int nX = psMetadataLookupS32(&status, polyMDtemp, "NORDER_X"); + ok(status, + "psPolynomial2DtoMetadata: found NORDER_X"); + ok(nX == 1, + "psPolynomial2DtoMetadata: NORDER_X is 1"); + + int nY = psMetadataLookupS32(&status, polyMDtemp, "NORDER_Y"); + ok(status, + "psPolynomial2DtoMetadata: found NORDER_Y"); + ok(nY == 1, + "psPolynomial2DtoMetadata: NORDER_Y is 1"); + + double val; + val = psMetadataLookupF64(&status, polyMDtemp, "VAL_X00_Y00"); + ok(status, + "psPolynomial2DtoMetadata: found VAL_X00_Y00"); + ok_double(val, 1.1, + "psPolynomial2DtoMetadata: VAL_X00_Y00 is %lf", val); + + val = psMetadataLookupF64(&status, polyMDtemp, "VAL_X01_Y01"); + ok(status, + "psPolynomial2DtoMetadata: found VAL_X01_Y01"); + ok_double(val, 4.4, + "psPolynomial2DtoMetadata: VAL_X01_Y01 is %lf", val); + + skip_end(); + } + + //Return false for no-name polynomial + { + ok( !psPolynomial2DtoMetadata(md, p2d, ""), + "psPolynomial2DtoMetadata: return false for no-name."); + } + //Return false for NULL-name polynomial + { + ok( !psPolynomial2DtoMetadata(md, p2d, NULL), + "psPolynomial2DtoMetadata: return false for NULL name input."); + } + //Return false for NULL metadata input + { + ok( !psPolynomial2DtoMetadata(NULL, p2d, "polyMD"), + "psPolynomial2DtoMetadata: return false for NULL metadata input."); + } + //Return false for NULL polynomial input + { + ok( !psPolynomial2DtoMetadata(md, NULL, "polyMD"), + "psPolynomial2DtoMetadata: return false for NULL polynomial input."); + } + //Return true for polynomial with 1 element, a constant + { + psPolynomial2D *constPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 0, 0); + constPoly->coeff[0][0] = 6.66; + ok( psPolynomial2DtoMetadata(md, constPoly, "polyMD"), + "psPolynomial2DtoMetadata: return true for constant polynomial (1 element != 0)."); + psFree(constPoly); + } + //Return false for non-ordinary polynomial + { + psPolynomial2D *p2d2 = psPolynomial2DAlloc(PS_POLYNOMIAL_CHEB, 1, 1); + p2d2->coeff[0][0] = 1.1; + ok( !psPolynomial2DtoMetadata(md, p2d2, "polyMD"), + "psPolynomial2DtoMetadata: return false for chebyshev polynomial"); + psFree(p2d2); + } + + //psPolynomial2DfromMetadata Tests + //Return NULL for NULL metadata input. + { + psPolynomial2D *emptyPoly2D = NULL; + emptyPoly2D = psPolynomial2DfromMetadata(NULL); + ok( emptyPoly2D == NULL, + "psPolynomial2DfromMetadata: return NULL for NULL metadata input."); + } + //Get a polynomial from Metadata. + psPolynomial2D *outPoly = NULL; + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + outPoly = psPolynomial2DfromMetadata(polyMDtemp); + { + skip_start( outPoly == NULL, 1, + "Skipping 1 tests because psPolynomial2DfromMetadata has errors."); + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 1 && + outPoly->nY == 1 && abs(outPoly->coeff[0][0] - 1.1) < DBL_EPSILON, + "psPolynomial2DfromMetadata: return correct polynomial from metadata"); + skip_end(); + } + //Get a polynomial from Metadata with mask[0][0] == 1. + psFree(outPoly); + outPoly = NULL; + psPolynomial2D *maskPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, 0, 0); + maskPoly->coeff[0][0] = 6.66; + maskPoly->mask[0][0] = 1; + psMetadata *newmd = psMetadataAlloc(); + psPolynomial2DtoMetadata(newmd, maskPoly, "polyMD"); + psMetadata *polyMask = psMetadataLookupMetadata(NULL, newmd, "polyMD"); + outPoly = psPolynomial2DfromMetadata(polyMask); + { + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 0 && + outPoly->nY == 0 && outPoly->mask[0][0] == 1, + "psPolynomial2DfromMetadata: return correct polynomial (w/mask) from metadata"); + } + psFree(maskPoly); + psFree(newmd); + //Return NULL for wrong NELEMENTS + psMetadataItem *nElementItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL); + nElementItem->data.S32 -= 1; + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial2DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial2DfromMetadata: " + "return NULL for metadata-polynomial with wrong NELEMENTS"); + } + //Return NULL for missing NELEMENTS + psMetadataRemoveIndex(polyMDtemp, PS_LIST_TAIL); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial2DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial2DfromMetadata: " + "return NULL for metadata-polynomial with no NELEMENTS"); + } + + //Return NULL for polynomial in metadata with no y-order + psMetadataRemoveKey(polyMDtemp, "NORDER_Y"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial2DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial2DfromMetadata: " + "return NULL for metadata-polynomial with no y-order"); + } + //Return NULL for polynomial in metadata with no x-order + psMetadataRemoveKey(polyMDtemp, "NORDER_X"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial2DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial2DfromMetadata: " + "return NULL for metadata-polynomial with no x-order"); + } + + //Check for Memory leaks + { + psFree(outPoly); + psFree(p2d); + psFree(md); + checkMem(); + } +} + +void test3Dcase(void) +{ + note(" >>>Test 3: psPolynomial3DtoMetadata & psPolynomial3DfromMetadata functions"); + psMetadata *md = psMetadataAlloc(); + psPolynomial3D *p3d = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 1, 1, 1); + p3d->coeff[0][0][0] = 1.1; + p3d->coeff[1][0][0] = 2.2; + p3d->coeff[0][1][0] = 3.3; + p3d->coeff[0][0][1] = 4.4; + p3d->coeff[1][1][0] = 5.5; + p3d->coeff[1][0][1] = 6.6; + p3d->coeff[0][1][1] = 7.7; + p3d->coeff[1][1][1] = 8.8; + p3d->coeffErr[0][0][0] = 0.1; + p3d->coeffErr[1][0][0] = 0.2; + p3d->coeffErr[0][1][0] = 0.3; + p3d->coeffErr[0][0][1] = 0.4; + p3d->coeffErr[1][1][0] = 0.5; + p3d->coeffErr[1][0][1] = 0.6; + p3d->coeffErr[0][1][1] = 0.7; + p3d->coeffErr[1][1][1] = 0.8; + + //psPolynomial3DtoMetadata + //Return a valid metadata containing a polynomial-metadata structure + { + ok( psPolynomial3DtoMetadata(md, p3d, "polyMD"), + "psPolynomial3DtoMetadata: return true for valid inputs."); + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + skip_start( polyMDtemp == NULL , 1, + "Skipping 1 tests because psPolynomial3DtoMetadata has errors"); + psMetadataItem *polyItem = psMetadataGet(polyMDtemp, 0); + skip_start( polyItem == NULL, 2, + "Skipping 3 tests because psPolynomial3DtoMetadata has errors in order elements"); + ok( !strncmp(polyItem->name, "NORDER_X", 10) && polyItem->data.S32 == 1, + "psPolynomial3DtoMetadata: return correct number of x orders."); + polyItem = psMetadataGet(polyMDtemp, 1); + ok( !strncmp(polyItem->name, "NORDER_Y", 10) && polyItem->data.S32 == 1, + "psPolynomial3DtoMetadata: return correct number of y orders."); + polyItem = psMetadataGet(polyMDtemp, 2); + ok( !strncmp(polyItem->name, "NORDER_Z", 10) && polyItem->data.S32 == 1, + "psPolynomial3DtoMetadata: return correct number of z orders."); + skip_end(); + polyItem = psMetadataGet(polyMDtemp, 3); + skip_start( polyItem == NULL, 2, + "Skipping 2 tests because psPolynomial3DtoMetadata has errors in coeff elements"); + ok( !strncmp(polyItem->name, "VAL_X00_Y00_Z00", 14) && + abs(polyItem->data.F64-1.1) < DBL_EPSILON, + "psPolynomial3DtoMetadata: return correct first element."); + polyItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL-1); + ok( !strncmp(polyItem->name, "ERR_X01_Y01_Z01", 14) && + abs(polyItem->data.F64-0.8) < DBL_EPSILON, + "psPolynomial3DtoMetadata: return correct last element."); + skip_end(); + skip_end(); + } + //Return false for no-name polynomial + { + ok( !psPolynomial3DtoMetadata(md, p3d, ""), + "psPolynomial3DtoMetadata: return false for no-name."); + } + //Return false for NULL-name polynomial + { + ok( !psPolynomial3DtoMetadata(md, p3d, NULL), + "psPolynomial3DtoMetadata: return false for NULL name input."); + } + //Return false for NULL metadata input + { + ok( !psPolynomial3DtoMetadata(NULL, p3d, "polyMD"), + "psPolynomial3DtoMetadata: return false for NULL metadata input."); + } + //Return false for NULL polynomial input + { + ok( !psPolynomial3DtoMetadata(md, NULL, "polyMD"), + "psPolynomial3DtoMetadata: return false for NULL polynomial input."); + } + /* //Return false for empty polynomial + { + psPolynomial3D *emptyPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0); + ok( !psPolynomial3DtoMetadata(md, emptyPoly, "polyMD"), + "psPolynomial3DtoMetadata: return false for empty polynomial input."); + psFree(emptyPoly); + } + */ + //Return true for polynomial with 1 element, a constant + { + psPolynomial3D *constPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0); + constPoly->coeff[0][0][0] = 6.66; + ok( psPolynomial3DtoMetadata(md, constPoly, "polyMD"), + "psPolynomial3DtoMetadata: return true for constant polynomial (1 element != 0)."); + psFree(constPoly); + } + //Return false for non-ordinary polynomial + { + psPolynomial3D *p3d2 = psPolynomial3DAlloc(PS_POLYNOMIAL_CHEB, 1, 1, 1); + p3d2->coeff[0][0][0] = 1.1; + ok( !psPolynomial3DtoMetadata(md, p3d2, "polyMD"), + "psPolynomial3DtoMetadata: return false for chebyshev polynomial"); + psFree(p3d2); + } + + //psPolynomial3DfromMetadata Tests + //Return NULL for NULL metadata input. + { + psPolynomial3D *emptyPoly2D = NULL; + emptyPoly2D = psPolynomial3DfromMetadata(NULL); + ok( emptyPoly2D == NULL, + "psPolynomial3DfromMetadata: return NULL for NULL metadata input."); + } + //Get a polynomial from Metadata. + psPolynomial3D *outPoly = NULL; + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + skip_start( outPoly == NULL, 1, + "Skipping 1 tests because psPolynomial3DfromMetadata has errors."); + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 1 && + outPoly->nY == 1 && outPoly->nZ == 1 && + abs(outPoly->coeff[0][0][0] - 1.1) < DBL_EPSILON, + "psPolynomial3DfromMetadata: return correct polynomial from metadata"); + skip_end(); + } + + //Get a polynomial from Metadata with mask[0][0][0] == 1. + psFree(outPoly); + outPoly = NULL; + psPolynomial3D *maskPoly = psPolynomial3DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0); + maskPoly->coeff[0][0][0] = 6.66; + maskPoly->mask[0][0][0] = 1; + psMetadata *newmd = psMetadataAlloc(); + psPolynomial3DtoMetadata(newmd, maskPoly, "polyMD"); + psMetadata *polyMask = psMetadataLookupMetadata(NULL, newmd, "polyMD"); + outPoly = psPolynomial3DfromMetadata(polyMask); + { + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 0 && outPoly->nY == 0 + && outPoly->nZ == 0 && outPoly->mask[0][0][0] == 1, + "psPolynomial3DfromMetadata: return correct polynomial (w/mask) from metadata"); + } + psFree(maskPoly); + psFree(newmd); + //Return NULL for wrong NELEMENTS + psMetadataItem *nElementItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL); + nElementItem->data.S32 -= 1; + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial3DfromMetadata: " + "return NULL for metadata-polynomial with wrong NELEMENTS"); + } + //Return NULL for missing NELEMENTS + psMetadataRemoveIndex(polyMDtemp, PS_LIST_TAIL); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial3DfromMetadata: " + "return NULL for metadata-polynomial with no NELEMENTS"); + } + + //Return NULL for polynomial in metadata with no z-order + psMetadataRemoveKey(polyMDtemp, "NORDER_Z"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial3DfromMetadata: return NULL for metadata-polynomial with no z-order"); + } + //Return NULL for polynomial in metadata with no y-order + psMetadataRemoveKey(polyMDtemp, "NORDER_Y"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial3DfromMetadata: return NULL for metadata-polynomial with no y-order"); + } + //Return NULL for polynomial in metadata with no x-order + psMetadataRemoveKey(polyMDtemp, "NORDER_X"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial3DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial3DfromMetadata: return NULL for metadata-polynomial with no x-order"); + } + + //Check for Memory leaks + { + psFree(outPoly); + psFree(p3d); + psFree(md); + checkMem(); + } +} + +void test4Dcase(void) +{ + note(" >>>Test 4: psPolynomial4DtoMetadata & psPolynomial4DfromMetadata functions"); + psMetadata *md = psMetadataAlloc(); + psPolynomial4D *p4d = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 1, 1, 1, 1); + p4d->coeff[0][0][0][0] = 1.1; + p4d->coeff[0][0][0][1] = 2.2; + p4d->coeff[0][0][1][0] = 3.3; + p4d->coeff[0][1][0][0] = 4.4; + p4d->coeff[1][0][0][0] = 5.5; + + p4d->coeff[0][0][1][1] = 6.6; + p4d->coeff[0][1][0][1] = 7.7; + p4d->coeff[1][0][0][1] = 8.8; + p4d->coeff[0][1][1][0] = 9.9; + p4d->coeff[1][0][1][0] = 10.10; + p4d->coeff[1][1][0][0] = 11.11; + + p4d->coeff[0][1][1][1] = 12.12; + p4d->coeff[1][0][1][1] = 13.13; + p4d->coeff[1][1][0][1] = 14.14; + p4d->coeff[1][1][1][0] = 15.15; + + p4d->coeff[1][1][1][1] = 16.16; + + p4d->coeffErr[0][0][0][0] = 0.1; + p4d->coeffErr[0][0][0][1] = 0.2; + p4d->coeffErr[0][0][1][0] = 0.3; + p4d->coeffErr[0][1][0][0] = 0.4; + p4d->coeffErr[1][0][0][0] = 0.5; + + p4d->coeffErr[0][0][1][1] = 0.6; + p4d->coeffErr[0][1][0][1] = 0.7; + p4d->coeffErr[1][0][0][1] = 0.8; + p4d->coeffErr[0][1][1][0] = 0.9; + p4d->coeffErr[1][0][1][0] = 0.10; + p4d->coeffErr[1][1][0][0] = 0.11; + + p4d->coeffErr[0][1][1][1] = 0.12; + p4d->coeffErr[1][0][1][1] = 0.13; + p4d->coeffErr[1][1][0][1] = 0.14; + p4d->coeffErr[1][1][1][0] = 0.15; + + p4d->coeffErr[1][1][1][1] = 0.16; + + //psPolynomial4DtoMetadata + //Return a valid metadata containing a polynomial-metadata structure + { + ok( psPolynomial4DtoMetadata(md, p4d, "polyMD"), + "psPolynomial4DtoMetadata: return true for valid inputs."); + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + skip_start( polyMDtemp == NULL , 1, + "Skipping 1 tests because psPolynomial4DtoMetadata has errors"); + psMetadataItem *polyItem = psMetadataGet(polyMDtemp, 0); + skip_start( polyItem == NULL, 2, + "Skipping 4 tests because psPolynomial4DtoMetadata has errors in order elements"); + ok( !strncmp(polyItem->name, "NORDER_X", 10) && polyItem->data.S32 == 1, + "psPolynomial4DtoMetadata: return correct number of x orders."); + polyItem = psMetadataGet(polyMDtemp, 1); + ok( !strncmp(polyItem->name, "NORDER_Y", 10) && polyItem->data.S32 == 1, + "psPolynomial4DtoMetadata: return correct number of y orders."); + polyItem = psMetadataGet(polyMDtemp, 2); + ok( !strncmp(polyItem->name, "NORDER_Z", 10) && polyItem->data.S32 == 1, + "psPolynomial4DtoMetadata: return correct number of z orders."); + polyItem = psMetadataGet(polyMDtemp, 3); + ok( !strncmp(polyItem->name, "NORDER_T", 10) && polyItem->data.S32 == 1, + "psPolynomial4DtoMetadata: return correct number of t orders."); + skip_end(); + polyItem = psMetadataGet(polyMDtemp, 4); + skip_start( polyItem == NULL, 2, + "Skipping 2 tests because psPolynomial4DtoMetadata has errors in coeff elements"); + ok( !strncmp(polyItem->name, "VAL_X00_Y00_Z00_T00", 14) && + abs(polyItem->data.F64-1.1) < DBL_EPSILON, + "psPolynomial4DtoMetadata: return correct first element."); + polyItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL-1); + ok( !strncmp(polyItem->name, "ERR_X01_Y01_Z01_T01", 14) && + abs(polyItem->data.F64-0.16) < DBL_EPSILON, + "psPolynomial4DtoMetadata: return correct last element."); + skip_end(); + skip_end(); + } + //Return false for no-name polynomial + { + ok( !psPolynomial4DtoMetadata(md, p4d, ""), + "psPolynomial4DtoMetadata: return false for no-name."); + } + //Return false for NULL-name polynomial + { + ok( !psPolynomial4DtoMetadata(md, p4d, NULL), + "psPolynomial4DtoMetadata: return false for NULL name input."); + } + //Return false for NULL metadata input + { + ok( !psPolynomial4DtoMetadata(NULL, p4d, "polyMD"), + "psPolynomial4DtoMetadata: return false for NULL metadata input."); + } + //Return false for NULL polynomial input + { + ok( !psPolynomial4DtoMetadata(md, NULL, "polyMD"), + "psPolynomial4DtoMetadata: return false for NULL polynomial input."); + } + /* //Return false for empty polynomial + { + psPolynomial4D *emptyPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0, 0); + ok( !psPolynomial4DtoMetadata(md, emptyPoly, "polyMD"), + "psPolynomial4DtoMetadata: return false for empty polynomial input."); + psFree(emptyPoly); + } + */ + //Return true for polynomial with 1 element, a constant + { + psPolynomial4D *constPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0, 0); + constPoly->coeff[0][0][0][0] = 6.66; + ok( psPolynomial4DtoMetadata(md, constPoly, "polyMD"), + "psPolynomial4DtoMetadata: return true for constant polynomial (1 element != 0)."); + psFree(constPoly); + } + //Return false for non-ordinary polynomial + { + psPolynomial4D *p4d2 = psPolynomial4DAlloc(PS_POLYNOMIAL_CHEB, 1, 1, 1, 1); + p4d2->coeff[0][0][0][0] = 1.1; + ok( !psPolynomial4DtoMetadata(md, p4d2, "polyMD"), + "psPolynomial4DtoMetadata: return false for chebyshev polynomial"); + psFree(p4d2); + } + + //psPolynomial4DfromMetadata Tests + //Return NULL for NULL metadata input. + { + psPolynomial4D *emptyPoly2D = NULL; + emptyPoly2D = psPolynomial4DfromMetadata(NULL); + ok( emptyPoly2D == NULL, + "psPolynomial4DfromMetadata: return NULL for NULL metadata input."); + } + //Get a polynomial from Metadata. + psPolynomial4D *outPoly = NULL; + psMetadata *polyMDtemp = psMetadataLookupMetadata(NULL, md, "polyMD"); + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + skip_start( outPoly == NULL, 1, + "Skipping 1 tests because psPolynomial4DfromMetadata has errors."); + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 1 && + outPoly->nY == 1 && outPoly->nZ == 1 && outPoly->nT == 1 && + abs(outPoly->coeff[0][0][0][0] - 1.1) < DBL_EPSILON, + "psPolynomial4DfromMetadata: return correct polynomial from metadata"); + skip_end(); + } + //Get a polynomial from Metadata with mask[0][0][0][0] == 1. + psFree(outPoly); + outPoly = NULL; + psPolynomial4D *maskPoly = psPolynomial4DAlloc(PS_POLYNOMIAL_ORD, 0, 0, 0, 0); + maskPoly->coeff[0][0][0][0] = 6.66; + maskPoly->mask[0][0][0][0] = 1; + psMetadata *newmd = psMetadataAlloc(); + psPolynomial4DtoMetadata(newmd, maskPoly, "polyMD"); + psMetadata *polyMask = psMetadataLookupMetadata(NULL, newmd, "polyMD"); + outPoly = psPolynomial4DfromMetadata(polyMask); + { + ok( outPoly->type == PS_POLYNOMIAL_ORD && outPoly->nX == 0 && outPoly->nY == 0 + && outPoly->nZ == 0 && outPoly->nT == 0 && outPoly->mask[0][0][0][0] == 1, + "psPolynomial4DfromMetadata: return correct polynomial (w/mask) from metadata"); + } + psFree(maskPoly); + psFree(newmd); + //Return NULL for wrong NELEMENTS + psMetadataItem *nElementItem = psMetadataGet(polyMDtemp, PS_LIST_TAIL); + nElementItem->data.S32 -= 1; + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: " + "return NULL for metadata-polynomial with wrong NELEMENTS"); + } + //Return NULL for missing NELEMENTS + psMetadataRemoveIndex(polyMDtemp, PS_LIST_TAIL); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: " + "return NULL for metadata-polynomial with no NELEMENTS"); + } + + //Return NULL for polynomial in metadata with no t-order + psMetadataRemoveKey(polyMDtemp, "NORDER_T"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: return NULL for metadata-polynomial with no t-order"); + } + //Return NULL for polynomial in metadata with no z-order + psMetadataRemoveKey(polyMDtemp, "NORDER_Z"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: return NULL for metadata-polynomial with no z-order"); + } + //Return NULL for polynomial in metadata with no y-order + psMetadataRemoveKey(polyMDtemp, "NORDER_Y"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: return NULL for metadata-polynomial with no y-order"); + } + //Return NULL for polynomial in metadata with no x-order + psMetadataRemoveKey(polyMDtemp, "NORDER_X"); + psFree(outPoly); + outPoly = NULL; + outPoly = psPolynomial4DfromMetadata(polyMDtemp); + { + ok( outPoly == NULL, + "psPolynomial4DfromMetadata: return NULL for metadata-polynomial with no x-order"); + } + + //Check for Memory leaks + { + psFree(outPoly); + psFree(p4d); + psFree(md); + checkMem(); + } +} + + + + Index: /branches/rel-1-1/psLib/test/types/tap_psMetadata_printing.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psMetadata_printing.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psMetadata_printing.c (revision 12167) @@ -0,0 +1,414 @@ +/** + * C Implementation: tap_psMetadata_printing + * + * Description: Tests for psMetadataPrint and psMetadataItemPrint. + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +static psMetadata *setupMeta(void); +void testMetaPrint(void); +void testMetaItemPrint(void); + +int main(void) +{ + plan_tests(30); + + note("psMetadataPrint and psMetadataItemPrint tests"); + + testMetaPrint(); + testMetaItemPrint(); + + done(); +} + +static psMetadata *setupMeta(void) +{ + psMetadata *md = NULL; + psMetadata *newMD = NULL; + int i = 0; + md = psMetadataAlloc(); + newMD = psMetadataAlloc(); + + psMetadataAddStr(md, PS_LIST_TAIL, "item5", 0, "I am a string", "GNIRTS"); + psMetadataAddBool(md, PS_LIST_TAIL, "item1", 0, "I am a boolean", true); + psMetadataAddBool(md, PS_LIST_TAIL, "item11", 0, "I am a boolean", false); + psMetadataAddS8(md, PS_LIST_TAIL, "item6", 0, "I am S8", 6); + psMetadataAddS16(md, PS_LIST_TAIL, "item7", 0, "I am S16", -666); + psMetadataAddS32(md, PS_LIST_TAIL, "item2", 0, "I am a integer", 55); + psMetadataAddS64(md, PS_LIST_TAIL, "helloS64", 0, "I am S64", 666); + psMetadataAddU8(md, PS_LIST_TAIL, "item8", 0, "I am U8", 6); + psMetadataAddU16(md, PS_LIST_TAIL, "item9", 0, "I am U16", 666); + psMetadataAddU32(md, PS_LIST_TAIL, "item10", 0, "I am U32", 666); + psMetadataAddU64(md, PS_LIST_TAIL, "item12", 0, "I am U64", 666); + psMetadataAddF32(md, PS_LIST_TAIL, "item3", 0, NULL, 3.14); + psMetadataAddF64(md, PS_LIST_TAIL, "item4", 0, "", 6.28); + + psMetadataAddS32(newMD, PS_LIST_TAIL, "ITEM01", 0, NULL, 666); + psMetadata *newestMD = NULL; + newestMD = psMetadataAlloc(); + psVector *vec = NULL; + vec = psVectorAlloc(60, PS_DATA_S32); + for (i = 0; i < 5; i++) { + vec->data.S32[i] = i+1; + } + vec->n = 5; + psMetadataAddVector(newestMD, PS_LIST_TAIL, "VECTORNEW", 0, "Newest VECTOR", vec); + psMetadataAddStr(newestMD, PS_LIST_TAIL, "cell", 0, "I am a p-Star string", "pStArRs"); + psMetadataAddMetadata(newMD, PS_LIST_TAIL, "META NEW", 0, "I AM Newest METADATA", newestMD); + psMetadataAddF32(newMD, PS_LIST_TAIL, "ITEM02", 0, "I AM FLOAT", 666.6); + psMetadataAddF64(newMD, PS_LIST_TAIL, "ITEM03", 0, "I AM DOUBLE", 666.666); + psMetadataAddS64(newMD, PS_LIST_TAIL, "item666", 0, "I am S64", 666); + + psMetadataAddMetadata(md, PS_LIST_TAIL, "metadata7", 0, "I am a metadata", newMD); + psRegion *region = psRegionAlloc(0.0, 2.0, 0.0, 2.0); + psMetadataAddPtr(md, PS_LIST_TAIL, "region", PS_DATA_REGION, "I am a region", region); + psList *list = psListAlloc(NULL); + psMetadataAddList(md, PS_LIST_TAIL, "list01", 0, "I am a list", list); + + psTime *time; + time = psTimeAlloc(PS_TIME_TAI); + time->sec = 1000; + time->nsec = 25; + time->leapsecond = true; + psMetadataAddTime(md, PS_LIST_TAIL, "time01", 0, "I am time", time); + + psMetadataAddVector(md, PS_LIST_TAIL, "vector6", 0, "I am a vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_U8); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.U8[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector7", 0, "I am a U8-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_U16); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.U16[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector8", 0, "I am a U16-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_U32); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.U32[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector9", 0, "I am a U32-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_U64); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.U64[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector10", 0, "I am a U64-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_S8); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.S8[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector11", 0, "I am a S8-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_S16); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.S16[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector12", 0, "I am a S16-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_S64); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.S64[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector13", 0, "I am a S64-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_F32); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.F32[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector14", 0, "I am a F32-vector", vec); + psFree(vec); + vec = psVectorAlloc(2, PS_DATA_F64); + vec->n = 2; + for (i = 0; i < 2; i++) { + vec->data.F64[i] = i+1; + } + psMetadataAddVector(md, PS_LIST_TAIL, "vector15", 0, "I am a F64-vector", vec); + + /* psImage *image = psImageAlloc(1, 1, PS_TYPE_S32); + psImageSet(image, 0, 0, 1); + psMetadataAddImage(md, PS_LIST_TAIL, "image1", 0, "I am an Image", image); + + psHash *hash = psHashAlloc(1); + psHashAdd(hash, "hash", image); + psMetadataAddHash(md, PS_LIST_TAIL, "hash1", 0, "I am a Hash", hash); + + psLookupTable *lookup = psLookupTableAlloc("table2.dat", "%s", 0); + psMetadataAddLookupTable(md, PS_LIST_TAIL, "lookup", 0, "I am a LookupTable", lookup); + + psArray *array = psArrayAlloc(1); + psArraySet(array, 0, image); + psMetadataAddArray(md, PS_LIST_TAIL, "array", 0, "I am an Array", array); + + psFree(array); + psFree(lookup); + psFree(image); + psFree(hash); + */ + psFree(region); + psFree(list); + psFree(time); + psFree(newestMD); + psFree(vec); + psFree(newMD); + return md; +} + +void testMetaPrint(void) +{ + note(" >>Test 1: psMetadataPrint"); + FILE *fd = fopen("psMetadataPrint.out", "w+"); + FILE *fd_read = fopen("Makefile", "r"); + psMetadata *md = NULL; + psMetadata *md2 = NULL; + md = setupMeta(); + md2 = psMetadataAlloc(); + psSphere *sphere = psSphereAlloc(); + psMetadataAddPtr(md2, PS_LIST_HEAD, "ptr", PS_DATA_SPHERE, "", sphere); + psMetadataAddUnknown(md2, PS_LIST_TAIL, "unknown", 0, "", sphere); + + psImage *image = psImageAlloc(1, 1, PS_TYPE_S32); + psImageSet(image, 0, 0, 1); + psMetadataAddImage(md2, PS_LIST_TAIL, "image1", 0, "I am an Image", image); + + psHash *hash = psHashAlloc(1); + psHashAdd(hash, "hash", image); + psMetadataAddHash(md2, PS_LIST_TAIL, "hash1", 0, "I am a Hash", hash); + + psLookupTable *lookup = psLookupTableAlloc("table2.dat", "%s", 0); + psMetadataAddLookupTable(md2, PS_LIST_TAIL, "lookup", 0, "I am a LookupTable", lookup); + + psArray *array = psArrayAlloc(1); + psArraySet(array, 0, image); + psMetadataAddArray(md2, PS_LIST_TAIL, "array", 0, "I am an Array", array); + + psFree(array); + psFree(lookup); + psFree(image); + psFree(hash); + + //Return false for NULL psMetadata input + { + ok( !psMetadataPrint(NULL, NULL, 0), + "psMetadataPrint: return false for NULL psMetadata input."); + } + //Return false for read-only file descriptor + { + ok ( !psMetadataPrint(fd_read, md, 0), + "psMetadataPrint: return false for read-only file descriptor."); + } + fclose(fd_read); + //Error and then return true for unprintable datatype (sphere) and DATA_UNKNOWN + { + ok ( !psMetadataPrint(NULL, md2, 0), + "psMetadataPrint: return false for metadata with unknown datatype."); + } + psFree(md2); + + //Return false for unsupported vector type (C32) + md2 = psMetadataAlloc(); + psVector *vector = psVectorAlloc(2, PS_TYPE_C32); + psMetadataAddVector(md2, PS_LIST_HEAD, "name here", 0, "I vector", vector); + { + ok ( !psMetadataPrint(NULL, md2, 2), + "psMetadataPrint: return false for metadata with unknown vector-type."); + } + psFree(vector); + psFree(md2); + + //Valid case where fd is NULL -> stdout + md2 = psMetadataAlloc(); + psMetadataAddStr(md2, PS_LIST_HEAD, + " >>Hello Wally", 0, "My name is Bubbles", "Pet Me"); + { + ok ( psMetadataPrint(NULL, md2, 0), + "psMetadataPrint: return true for NULL file pointer."); + } + psFree(md2); + //Valid case where fd is "psMetadataPrint.out" + { + ok ( psMetadataPrint(fd, md, 0), + "psMetadataPrint: return true for file='psMetadataPrint.out'."); + } + + //Check for Memory Leaks before exit + { + fclose(fd); + remove + ("psMetadataPrint.out"); + psFree(sphere); + psFree(md); + checkMem(); + } +} + +void testMetaItemPrint(void) +{ + note(" >>Test2: psMetadataItemPrint"); + FILE *fd; + //bool psMetadataItemPrint(FILE * fd, const char *format, const psMetadataItem* item) + fd = fopen("psMetadataItemPrint.out", "w"); + psMetadataItem *item1 = psMetadataItemAlloc("bool", PS_DATA_BOOL, "No Comment", true); + psMetadataItem *item2 = psMetadataItemAlloc("f32", PS_DATA_F32, "No Comment", 0.66601); + psMetadataItem *item3 = psMetadataItemAlloc("string", PS_DATA_STRING, "", "Can't touch this"); + psMetadataItem *item4 = psMetadataItemAlloc("U16", PS_DATA_U16, "", 1); + psMetadataItem *item5 = psMetadataItemAlloc("string", PS_DATA_U8, "", "a"); + + //Return false for NULL file-pointer + { + ok( !psMetadataItemPrint(NULL, "%s", item1), + "psMetadataItemPrint: return false for NULL FILE*."); + } + //Return false for NULL format paramter + { + ok( !psMetadataItemPrint(fd, NULL, item1), + "psMetadataItemPrint: return false for NULL format."); + } + //Return false for NULL metadataItem + { + ok( !psMetadataItemPrint(fd, "%s", NULL), + "psMetadataItemPrint: return false for NULL psMetadataItem."); + } + //Return false for incorrect format parameter + { + ok( !psMetadataItemPrint(fd, "sos \n", item1), + "psMetadataItemPrint: return false for incorrect format."); + } + //Return false for type that doesn't match format (ie, %s for f32 value) + { + ok( !psMetadataItemPrint(fd, "%s", item2), + "psMetadataItemPrint: return false for item that doesn't match format."); + } + + //Return false for incorrect format parameter + { + ok( !psMetadataItemPrint(fd, "%z", item1), + "psMetadataItemPrint: return false for incorrect format."); + } + + + //Return true for format parameter containing additional modifiers (F32) + { + ok( psMetadataItemPrint(fd, "%.3f\n", item2), + "psMetadataItemPrint: return true for format with .3 modifier."); + } + //Return true for valid string input + { + ok( psMetadataItemPrint(fd, "%s\n", item3), + "psMetadataItemPrint: return true for valid string case w/s."); + } + //Return true for valid ptr input + { + ok( psMetadataItemPrint(fd, "%p\n", item3), + "psMetadataItemPrint: return true for valid ptr case w/p."); + } + + //Return true for format = %d, type = int + { + ok( psMetadataItemPrint(fd, "%d\n", item4), + "psMetadataItemPrint: return true for valid case w/d."); + } + //Return true for format = %i, type = int + { + ok( psMetadataItemPrint(fd, "%i\n", item4), + "psMetadataItemPrint: return true for valid case w/i."); + } + //Return true for format = %c, type = int + { + ok( psMetadataItemPrint(fd, "%c\n", item5), + "psMetadataItemPrint: return true for valid case w/c."); + } + //Return true for format = %o, type = int + { + ok( psMetadataItemPrint(fd, "%o\n", item4), + "psMetadataItemPrint: return true for valid case w/d."); + } + //Return true for format = %u, type = int + { + ok( psMetadataItemPrint(fd, "%u\n", item4), + "psMetadataItemPrint: return true for valid case w/i."); + } + //Return true for format = %x, type = int + { + ok( psMetadataItemPrint(fd, "%x\n", item5), + "psMetadataItemPrint: return true for valid case w/c."); + } + //Return true for format = %X, type = int + { + ok( psMetadataItemPrint(fd, "%X\n", item5), + "psMetadataItemPrint: return true for valid case w/c."); + } + + //Return true for format = %e, type = int + { + ok( psMetadataItemPrint(fd, "%.1e\n", item2), + "psMetadataItemPrint: return true for valid case w/e."); + } + //Return true for format = %E, type = int + { + ok( psMetadataItemPrint(fd, "%.2E\n", item2), + "psMetadataItemPrint: return true for valid case w/E."); + } + //Return true for format = %F, type = int + { + ok( psMetadataItemPrint(fd, "%.3F\n", item2), + "psMetadataItemPrint: return true for valid case w/F."); + } + //Return true for format = %g, type = int + { + ok( psMetadataItemPrint(fd, "%.3g\n", item2), + "psMetadataItemPrint: return true for valid case w/g."); + } + //Return true for format = %G, type = int + { + ok( psMetadataItemPrint(fd, "%.4G\n", item2), + "psMetadataItemPrint: return true for valid case w/G."); + } + //Return true for format = %a, type = int + { + ok( psMetadataItemPrint(fd, "%.4a\n", item2), + "psMetadataItemPrint: return true for valid case w/a."); + } + //Return true for format = %A, type = int + { + ok( psMetadataItemPrint(fd, "%A\n", item2), + "psMetadataItemPrint: return true for valid case w/A."); + } + + //Check for Memory Leaks before exit + { + fclose(fd); + unlink ("psMetadataItemPrint.out"); + psFree(item1); + psFree(item2); + psFree(item3); + psFree(item4); + psFree(item5); + checkMem(); + } +} + Index: /branches/rel-1-1/psLib/test/types/tap_psPixels_all.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tap_psPixels_all.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tap_psPixels_all.c (revision 12167) @@ -0,0 +1,373 @@ +/** + * C Implementation: tap_psPixels_all + * + * Description: Tests for psPixelsAlloc, psPixelsRealloc, psMemCheckPixels, + * psPixelsCopy, psPixels(To/From)Mask, p_psPixelsAppend, psPixelsLength, + * psPixels(Set/Get), psPixelsConcatenate + * + * + * Author: dRob , (C) 2006 + * + * Copyright: See COPYING file that comes with this distribution + * + */ + +#include + +#include "tap.h" +#include "pstap.h" + +void testPixelsCreate(void); +void testPixelsManip(void); + +int main(void) +{ + plan_tests(38); + + note("Tests for psPixels Functions"); + + testPixelsCreate(); + testPixelsManip(); + + done(); +} + +void testPixelsCreate(void) +{ + note(" >>>Test 1: psPixels Creation Fxns"); + + //Return allocated psPixels of length 0 with NULL data. + psPixels* p0 = psPixelsAlloc(0); + { + ok(p0 != NULL && p0->n == 0 && p0->data == NULL && p0->nalloc == 0, + "psPixelsAlloc: return newly allocated psPixels of 0 length."); + } + //Return properly allocated psPixels + psPixels* p1 = psPixelsAlloc(1); + { + ok(p1 != NULL && p1->n == 0 && p1->data != NULL && p1->nalloc == 1, + "psPixelsAlloc: return newly allocated psPixels of 1 length."); + } + //Make sure psMemCheckPixels works correctly - return true + { + ok( psMemCheckPixels(p1), + "psMemCheckPixels: return true for psPixels input."); + } + //Make sure psMemCheckPixels works correctly - return false + { + int j = 2; + ok( !psMemCheckPixels(&j), + "psMemCheckPixels: return false for non-psPixels input."); + } + //Return a psPixels for attempt to Reallocate a NULL psPixels. + { + psPixels *noPix = NULL; + noPix = psPixelsRealloc(noPix, 1); + ok(noPix != NULL && noPix->n == 0 && noPix->data != NULL && noPix->nalloc == 1, + "psPixelsRealloc: return re-allocated psPixels of 1 length."); + psFree(noPix); + } + //Return a 0-length allocated psPixels on Realloc with 0 + { + psPixels *noPix = NULL; + noPix = psPixelsRealloc(noPix, 1); + noPix = psPixelsRealloc(noPix, 0); + ok( noPix->n == 0 && noPix->data == NULL && noPix->nalloc == 0, + "psPixelsRealloc: return re-allocated psPixels of 0 length."); + psFree(noPix); + } + //Return a properly down-sized psPixels. + p0 = p_psPixelsAppend(p0, 1, 1.1, 1.2); + p0 = p_psPixelsAppend(p0, 1, 2.1, 2.2); + p0 = p_psPixelsAppend(p0, 1, 3.1, 3.2); + p0 = p_psPixelsAppend(p0, 0, 4.1, 4.2); + { + skip_start( psPixelsLength(p0) != 4, 1, + "Skipping 1 tests because psPixels input is of wrong size! =%ld", p0->n); + p0 = psPixelsRealloc(p0, 2); + ok( p0->n == 2 && fabs(p0->data[0].x - 1.1) < FLT_EPSILON && p0->nalloc == 2, + "psPixelsRealloc: return properly down-sized psPixels."); + skip_end(); + } + //Now see if we can create a valid psPixels copy of p0 + { + psPixels *noPix = NULL; + noPix = psPixelsCopy(noPix, p0); + ok( noPix->n == 2 && fabs(noPix->data[0].x - 1.1) < FLT_EPSILON && noPix->nalloc == 2, + "psPixelsCopy: return properly copied psPixels."); + psFree(noPix); + } + //Return NULL for attempting to create a psPixels copy of NULL input. + { + psPixels *noPix = NULL; + noPix = psPixelsCopy(noPix, NULL); + ok( noPix == NULL, + "psPixelsCopy: return NULL for NULL psPixels input."); + } + //Try to get the length of a non-psPixels object + { + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + ok( psPixelsLength((psPixels*)vector) == -1, + "psPixelsLength: return -1 for non-psPixels input."); + psFree(vector); + } + + //Check for Memory leaks + { + psFree(p1); + psFree(p0); + checkMem(); + } +} + +void testPixelsManip(void) +{ + note(" >>>Test 2: psPixels Manipulation Fxns"); + + //Tests for psPixelsSet + psPixels *p0 = psPixelsAlloc(1); + psPixelCoord in; + in.x = 1.1; + in.y = 1.2; + //Return false for NULL pixels input + { + ok( !psPixelsSet(NULL, 0, in), + "psPixelsSet: return false for NULL pixels input."); + } + //Return true for valid inputs + { + ok( psPixelsSet(p0, 0, in), + "psPixelsSet: return true for valid inputs."); + } + //Return false for position == nalloc + { + ok( !psPixelsSet(p0, 1, in), + "psPixelsSet: return false for position == nalloc."); + } + //Return false for out-of-range position + { + ok( !psPixelsSet(p0, 2, in), + "psPixelsSet: return false for out-of-range position."); + } + //Return false for negative out-of-range position + { + ok( !psPixelsSet(p0, -2, in), + "psPixelsSet: return false for negative out-of-range position."); + } + //Return true for valid negative position + { + ok( psPixelsSet(p0, -1, in), + "psPixelsSet: return true for valid negative position."); + } + + //Tests for psPixelsGet + psPixelCoord out; + //Return NAN's for NULL pixels input + { + out = psPixelsGet(NULL, 1); + ok( isnan(out.x) && isnan(out.y), + "psPixelsGet: return NANs for NULL pixels input."); + } + //Return NAN's for out-of-range position + { + out = psPixelsGet(p0, 2); + ok( isnan(out.x) && isnan(out.y), + "psPixelsGet: return NANs for out-of-range position."); + } + //Return NAN's for out-of-range negative position + { + out = psPixelsGet(p0, -2); + ok( isnan(out.x) && isnan(out.y), + "psPixelsGet: return NANs for out-of-range negative position."); + } + //Return true for valid inputs + { + out = psPixelsGet(p0, 0); + ok( fabs(out.x - 1.1) < FLT_EPSILON && fabs(out.y - 1.2) < FLT_EPSILON, + "psPixelsGet: return correct values for valid inputs."); + } + //Return true for valid negative position + { + out = psPixelsGet(p0, -1); + ok( fabs(out.x - 1.1) < FLT_EPSILON && fabs(out.y - 1.2) < FLT_EPSILON, + "psPixelsGet: return correct values for valid negative position."); + } + + //p_psPixelsPrint Tests + //Return true for valid inputs + { + FILE *newFD = fopen("psPixels.out", "w+"); + ok ( p_psPixelsPrint(newFD, p0, "PS-PIXELS"), + "p_psPixelsPrint: return true for valid input."); + fflush(NULL); + fclose(newFD); + } + //Return false for invalid file + { + FILE *dummy = fopen("psPixels.out", "r"); + ok ( !p_psPixelsPrint(dummy, p0, "failed test"), + "p_psPixelsPrint: return false for invalid file input."); + fclose(dummy); + remove + ("psPixels.out"); + } + //Return true for NULL pixels and name inputs + { + ok ( p_psPixelsPrint(stdout, NULL, NULL), + "p_psPixelsPrint: return true for NULL pixels and name inputs."); + } + //Return true for empty pixel data. + psPixels *p1 = psPixelsAlloc(0); + { + ok ( p_psPixelsPrint(NULL, p1, "noPix"), + "p_psPixelsPrint: return true for NULL file and empty pixel data inputs."); + } + + //psPixelsToMask Tests + psImage *outImage = NULL; + psRegion region; + region.x0 = 1.0; + region.x1 = -2.0; + region.y0 = 1.0; + region.y1 = 5.0; + psMaskType maskVal = 1; + + //Return NULL for NULL pixels input + { + outImage = psPixelsToMask(outImage, NULL, region, maskVal); + ok ( outImage == NULL, + "psPixelsToMask: return NULL for NULL pixels input."); + } + //Return NULL for empty pixel data + { + outImage = psPixelsToMask(outImage, p1, region, maskVal); + ok ( outImage == NULL, + "psPixelsToMask: return NULL for NULL pixels data input."); + } + //Return NULL for bad region input - negative value + { + outImage = psPixelsToMask(outImage, p0, region, maskVal); + ok ( outImage == NULL, + "psPixelsToMask: return NULL for negative value in region."); + } + //Return NULL for bad region input - upper bound less than lower bound + region.x0 = 3.0; + region.x1 = 1.0; + { + outImage = psPixelsToMask(outImage, p0, region, maskVal); + ok ( outImage == NULL, + "psPixelsToMask: return NULL for bad region input."); + } + region.x0 = 1.0; + region.x1 = 3.0; + //Return NULL for un-recyclable image - out->type.dimen != PS_DIMEN_IMAGE + outImage = psImageAlloc(1, 1, PS_TYPE_S32); + *(psDimen*)&(outImage->type.dimen) = PS_DIMEN_OTHER; + { + outImage = psPixelsToMask(outImage, p0, region, maskVal); + ok ( outImage == NULL, + "psPixelsToMask: return NULL for bad image input."); + } + //Return valid image for valid inputs + p0 = p_psPixelsAppend(p0, 1, 2.1, 2.2); + p0 = p_psPixelsAppend(p0, 1, 3.1, 3.2); + p0 = p_psPixelsAppend(p0, 1, 1.0, 1.0); + { + outImage = psPixelsToMask(outImage, p0, region, maskVal); + ok ( outImage != NULL, + "psPixelsToMask: return valid image for valid input."); + } + + //psPixelsFromMask Tests + //Return valid psPixels for valid inputs + psFree(outImage); + outImage = psImageAlloc(31, 99, PS_TYPE_MASK); + for (int i = 0; i < outImage->numCols; i++) { + for (int j = 0; j < outImage->numRows; j++) { + outImage->data.PS_TYPE_MASK_DATA[i][j] = 1; + } + } + psPixels *outPixels = NULL; + { + outPixels = psPixelsFromMask(outPixels, outImage, maskVal); + ok ( outPixels != NULL, + "psPixelsFromMask: return valid image for valid input."); + } + //Return NULL for NULL image input + { + outPixels = psPixelsFromMask(outPixels, NULL, maskVal); + ok ( outPixels == NULL, + "psPixelsFromMask: return NULL for NULL image input."); + } + //Return NULL for image with wrong maskType + *(psElemType*)&(outImage->type.type) = PS_TYPE_U32; + { + outPixels = psPixelsFromMask(outPixels, outImage, maskVal); + ok ( outPixels == NULL, + "psPixelsFromMask: return NULL for image with wrong maskType."); + } + + //psPixelsConcatenate Tests + //Return NULL for NULL pixels input + { + outPixels = psPixelsConcatenate(outPixels, NULL); + ok ( outPixels == NULL, + "psPixelsConcatenate: return NULL for NULL pixels input."); + } + //Return copy of input pixels for NULL out pixels + { + outPixels = psPixelsConcatenate(outPixels, p0); + ok ( outPixels->n == 4 && fabs(outPixels->data[0].x - 1.1) < FLT_EPSILON && + fabs(outPixels->data[0].y - 1.2) < FLT_EPSILON , + "psPixelsConcatenate: return copy of input pixels for NULL out input."); + psFree(outPixels); + } + //Return properly concatenated psPixels list + //Set all the compare cases to cover 'comparePixelCoord' as well. + outPixels = psPixelsAlloc(5); + in.x = 1.0; + in.y = 1.0; + psPixelsSet(outPixels, 0, in); //1, 1 + psPixelsSet(outPixels, 1, in); //1, 1 + in.y = 2.0; + psPixelsSet(outPixels, 2, in); //1, 2 + in.y = 1.0; + psPixelsSet(outPixels, 3, in); //1, 1 + in.x = 2.0; + psPixelsSet(outPixels, 4, in); //2, 1 + + psPixels *testPixels = psPixelsAlloc(6); + in.x = 1.0; + in.y = 1.0; + psPixelsSet(testPixels, 0, in); //1, 1 + in.y = 2.0; + psPixelsSet(testPixels, 1, in); //1, 2 + in.y = 1.0; + psPixelsSet(testPixels, 2, in); //1, 1 + in.x = 2.0; + psPixelsSet(testPixels, 3, in); //2, 1 + in.x = 1.0; + psPixelsSet(testPixels, 4, in); //1, 1 + in.x = 5.0; + in.y = 3.0; + psPixelsSet(testPixels, 5, in); //5, 3 + //Return properly concatenate pixel list + { + outPixels = psPixelsConcatenate(outPixels, testPixels); + ok ( outPixels->n == 6, + "psPixelsConcatenate: return properly concatenate pixel list for valid inputs."); + } + + + //Check for Memory leaks + { + psFree(testPixels); + psFree(outPixels); + psFree(outImage); + psFree(p1); + psFree(p0); + checkMem(); + } +} + + Index: /branches/rel-1-1/psLib/test/types/tst_psArguments.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psArguments.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psArguments.c (revision 12167) @@ -0,0 +1,81 @@ +/** @file tst_psArguments.c +* +* @brief Test driver for psArguments functions +* +* @author David Robbins, MHPCC +* +* @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-09-13 02:20:15 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include "pslib.h" + +static psS32 testArgument(void); +/* +testDescription tests[] = { + {testArgument, 666, "Test psArgument fxns", 0, false}, + {NULL} + }; +*/ +int main(int argc, char* argv[]) +{ + psLogSetLevel( PS_LOG_INFO ); + testArgument(); + // if( !runTestSuite(stderr,"psArguments",tests,argc,argv)) { + // return 1; + // } + return 0; +} + +psS32 testArgument(void) +{ + char *argv[6]; + argv[0] = "./program"; + argv[1] = "-string"; + argv[2] = "new"; + argv[3] = "-float"; + argv[4] = "6.66"; + argv[5] = "-vvv"; + int argc = 6; + + int i = psArgumentGet(argc, argv, "-float"); + if ( i != 0 ) { + if ( !psArgumentRemove(i, &argc, argv) ) { + printf("\n Failed to remove float from argument list\n"); + } + } else { + printf("\nFailed to find string in argument list\n"); + return 1; + } + psArgumentRemove(i, &argc, argv); + printf("\n Argument %d has been removed", i); + int log = psArgumentVerbosity(&argc, argv); + printf("\nLog level = %d \n", log); + + psMetadata *args = psMetadataAlloc(); + psMetadataAdd(args, PS_LIST_TAIL, "-string", PS_DATA_STRING, "Test String", "SomeString"); + psMetadataAdd(args, PS_LIST_TAIL, "-float", PS_DATA_F32, "Test Float", 0.0); + psMetadata *ints = psMetadataAlloc(); + psMetadataAdd(ints, PS_LIST_TAIL, "int1", PS_DATA_S32, "Int1", 1); + psMetadataAdd(ints, PS_LIST_TAIL, "int2", PS_DATA_S32, "Int2", 2); + psMetadataAdd(args, PS_LIST_TAIL, "-int", PS_DATA_METADATA, "Integers", ints); + psFree(ints); // Drop reference + + printf("\nThis Should print the Argument Help list.\n\n"); + psArgumentHelp(args); + + if ( !psArgumentParse(args, &argc, argv) || argc != 1 ) { + psArgumentHelp(args); + psFree(args); + return 2; + } + + psMetadataPrint(NULL, args, 4); + + psFree(args); + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psArray.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psArray.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psArray.c (revision 12167) @@ -0,0 +1,533 @@ +/** @file tst_psArray.c + * + * @brief Test driver for psArray integer functions + * + * This test driver contains the following tests for psArray test point 1: + * A) Create void pointer array + * B) Add data to void pointer array + * C) Reallocate void pointer array bigger + * D) Reallocate void pointer array smaller + * E) Reallocate with null pointer + * F) Remove item from array + * G) Remove invalid item from array + * H) Remove item from null array + * I) Remove null item from array + * J) Free void pointer array + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-03-06 22:34:25 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include + +#include "pslib_strict.h" +#include "psTest.h" + +typedef struct +{ + psS32 x; + float y; +} +testStruct; + +static int testStructCompare(const void **a, const void **b) +{ + testStruct* first = (testStruct*)*a; + testStruct* second = (testStruct*)*b; + + if(first->x < second->x) + return -1; + else if (first->x > second->x) + return 1; + else + return 0; +} + +static psS32 testArray( void ); +static psS32 testArray01( void ); +static psS32 testArrayAdd( void ); +static psS32 testArrayGetSet( void ); +static psS32 testArrayLength( void ); + +testDescription tests[] = { + {testArray, 665, "psArray", 0, false}, + {testArray01, 666, "psArray01", 0, false}, + {testArrayAdd, 667, "psArrayAdd", 0, false}, + {testArrayGetSet, 668, "psArrayGetSet", 0, false}, + {testArrayLength, 669, "psArrayLength", 0, false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psArray", tests, argc, argv ) ); +} + + +psS32 testArray(void) +{ + // Create array of pointers + testStruct *mySt[10]; + psArray *psArr1 = NULL; + + // Test A - Create void pointer array + printPositiveTestHeader(stderr,"psArray", "Create void pointer array"); + psArray *psArr = psArrayAlloc(5); + if (psArr->nalloc != 5) { + psError(PS_ERR_UNKNOWN, true,"psArray didn't have proper number of elements."); + return 1; + } + printFooter(stderr, "psArray", "Create void pointer array", true); + + + // Test B - Add data to void pointer array + printPositiveTestHeader(stderr, "psArray", "Add data to void pointer array"); + for(psS32 i = 0; i < 5; i++) { + testStruct *ts = psAlloc(sizeof(testStruct)); + ts->x = 10*i; + ts->y = 10.1*i; + mySt[i] = ts; + // psArr->data[i] = ts; + if (!psArraySet(psArr, psArr->n, (psPtr)ts) ) { + return 6; + } + psMemIncrRefCounter(ts); + psFree(ts); + } + + for(psS32 i = 0; i < 5; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if (fabsf(ts->x - 10*i) > 0.01f || fabsf(ts->y - 10.1*i) > 0.01f) { + psError(PS_ERR_UNKNOWN, true,"Couldn't properly get elements from array."); + return 2; + } + } + fprintf(stderr,"array size = %ld\n", psArr->nalloc); + if (psArr->nalloc != 5) { + psError(PS_ERR_UNKNOWN, true,"Array Size wrong"); + return 3; + } + fprintf(stderr,"array population = %ld\n", psArr->n); + if (psArr->n != 5) { + psError(PS_ERR_UNKNOWN, true,"Array population wrong"); + return 4; + } + printFooter(stderr, "psArray", "Add data to void pointer array", true); + + + // Test C - Reallocate void pointer array bigger + printPositiveTestHeader(stderr,"psArray", "Reallocate void pointer array bigger"); + psArr = psArrayRealloc(psArr,10); + fprintf(stderr,"Adding more elements to void pointer array...\n"); + for(psS32 i = 5; i < 10; i++) { + testStruct *ts = psAlloc(sizeof(testStruct)); + ts->x = 10*i; + ts->y = 10.1*i; + mySt[i] = ts; + psArr->data[i] = ts; + psArr->n++; + psMemIncrRefCounter(ts); + } + for(psS32 i = 0; i < 10; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if (fabsf(ts->x - 10*i) > 0.01f || fabsf(ts->y - 10.1*i) > 0.01f) { + psError(PS_ERR_UNKNOWN, true,"Couldn't properly get elements from array."); + return 5; + } + } + fprintf(stderr,"array size = %ld\n", psArr->nalloc); + if (psArr->nalloc != 10) { + psError(PS_ERR_UNKNOWN, true,"Array Size wrong"); + return 6; + } + fprintf(stderr,"array population = %ld\n", psArr->n); + if (psArr->n != 10) { + psError(PS_ERR_UNKNOWN, true,"Array Population wrong"); + return 7; + } + printFooter(stderr, "psArray", "Reallocate void pointer array bigger", true); + + // Test D - Reallocate void pointer array smaller + printPositiveTestHeader(stderr,"psArray","Reallocate void pointer array smaller"); + psArr = psArrayRealloc(psArr,3); + for(psS32 i = 0; i < 3; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if (fabsf(ts->x - 10*i) > 0.01f || fabsf(ts->y - 10.1*i) > 0.01f) { + psError(PS_ERR_UNKNOWN, true,"Couldn't properly get elements from array."); + return 8; + } + } + fprintf(stderr,"array size = %ld\n", psArr->nalloc); + if (psArr->nalloc != 3) { + psError(PS_ERR_UNKNOWN, true,"Array Size wrong"); + return 9; + } + fprintf(stderr,"array population = %ld\n", psArr->n); + if (psArr->n != 3) { + psError(PS_ERR_UNKNOWN, true,"Array Population wrong"); + return 10; + } + printFooter(stderr, "psArray", "Reallocate integer void pointer smaller", true); + + // Test E - Reallocate with a null + printNegativeTestHeader(stderr,"psArray","Reallocate with a null array", + "Error message generator", 0 ); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message."); + psArr1 = psArrayRealloc(NULL,5); + if ( psArr1 != NULL ) { + fprintf(stderr,"ERROR: Return is not NULL\n"); + } + printFooter(stderr,"psArray","Reallocate with a null array",true); + + + // Test F - Remove item from array + printPositiveTestHeader(stderr, "psArray", "Remove valid item"); + if( !psArrayRemove(psArr,mySt[0]) ) { + psError(PS_ERR_UNKNOWN,true,"Unable to remove valid item"); + return 100; + } + fprintf(stderr,"Array size after removal = %ld\n",psArr->n); + if ( psArr->n != 2 ) { + psError(PS_ERR_UNKNOWN, true, "Items in array not decremented after removal"); + return 101; + } + for(psS32 i = 0; i < psArr->n; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if(fabsf(ts->x - 10*(i+1)) > 0.01f || fabsf(ts->y - 10.1*(i+1)) > 0.01f) { + psError(PS_ERR_UNKNOWN, true, "Elements not as expected after remove."); + return 102; + } + } + printFooter(stderr,"psArray","Remove valid item", true); + + // Test G - Remove invalid item from array + printPositiveTestHeader(stderr, "psArray", "Remove invalid item from array"); + if( psArrayRemove(psArr,mySt[9]) ) { + psError(PS_ERR_UNKNOWN,true,"Removed invalid item from array"); + return 103; + } + printFooter(stderr,"psArray","Remove invalid item from array",true); + + // Test H - Remove item from null array + printPositiveTestHeader(stderr, "psArray", "Remove item from null array"); + if ( psArrayRemove(NULL,mySt[1]) ) { + psError(PS_ERR_UNKNOWN,true,"Removed valid item from null array"); + return 104; + } + printFooter(stderr,"psArray","Remove item from null array",true); + + // Test I - Remove null item from array + printPositiveTestHeader(stderr, "psArray", "Remove null item from array"); + if( psArrayRemove(psArr,NULL) ) { + psError(PS_ERR_UNKNOWN,true,"Remove null item from array",true); + return 105; + } + printFooter(stderr,"psArray","Remove null item from array",true); + + // Test J - Free void pointer array + printPositiveTestHeader(stderr, "psArray", "Free void pointer array"); + psFree(psArr); + for(psS32 i = 0; i < 10; i++) { + psFree(mySt[i]); + } + + printFooter(stderr, "psArray" ,"Free void pointer array", true); + + return 0; +} + +psS32 testArray01(void) +{ + // Create array of pointers + testStruct *mySt[10]; + + // Test A - Create void pointer array + printPositiveTestHeader(stderr,"psArray", "Create void pointer array"); + psArray *psArr = psArrayAlloc(10); + if (psArr->nalloc != 10) { + psError(PS_ERR_UNKNOWN, true,"psArray didn't have proper number of elements."); + return 1; + } + printFooter(stderr, "psArray", "Create void pointer array", true); + + // Test B - Add data to void pointer array + printPositiveTestHeader(stderr, "psArray", "Add data to void pointer array"); + for(psS32 i = 0; i < 10; i++) { + testStruct *ts = psAlloc(sizeof(testStruct)); + ts->x = 10*(10-i); + ts->y = 10.1*(10-i); + mySt[i] = ts; + // psArr->data[i] = ts; + if (!psArraySet(psArr, psArr->n, (psPtr)ts) ) { + return 6; + } + psMemIncrRefCounter(ts); + psFree(ts); + } + + for(psS32 i = 0; i < 10; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if (fabsf(ts->x - 10*(10-i)) > 0.01f || fabsf(ts->y - 10.1*(10-i)) > 0.01f) { + psError(PS_ERR_UNKNOWN, true,"Couldn't properly get elements from array."); + return 2; + } + } + fprintf(stderr,"array size = %ld\n", psArr->nalloc); + if (psArr->nalloc != 10) { + psError(PS_ERR_UNKNOWN, true,"Array Size wrong"); + return 3; + } + fprintf(stderr,"array population = %ld\n", psArr->n); + if (psArr->n != 10) { + psError(PS_ERR_UNKNOWN, true,"Array population wrong"); + return 4; + } + printFooter(stderr, "psArray", "Add data to void pointer array", true); + + // Test C - Sort data in array + printPositiveTestHeader(stderr,"psArray","Sort data in array"); + psArr = psArraySort(psArr,testStructCompare); + for(psS32 i = 0; i < 10; i++) { + testStruct *ts = (testStruct*)psArr->data[i]; + fprintf(stderr,"ts[%d].x = %d ts[%d].y = %.2f\n", i, ts->x, i, ts->y); + if (fabsf(ts->x - 10*(i+1)) > 0.01f || fabsf(ts->y - 10.1*(i+1)) > 0.01f) { + psError(PS_ERR_UNKNOWN, true,"Couldn't properly get elements from array."); + return 5; + } + } + printFooter(stderr,"psArray","Sort data in array",true); + + // Test D - Attempt to sort null array + printPositiveTestHeader(stderr,"psArray","Attempt to sort array"); + psArray* tempArr = psArraySort(NULL,testStructCompare); + if(tempArr != NULL) { + psError(PS_ERR_UNKNOWN,true,"Array sort did not return null when sorting null array"); + return 6; + } + printFooter(stderr,"psArray","Attempt to sort array",true); + + // Test E - Free void pointer array + printPositiveTestHeader(stderr, "psArray", "Free void pointer array"); + psFree(psArr); + for(psS32 i = 0; i < 10; i++) { + psFree(mySt[i]); + } + if( psMemCheckLeaks(0, NULL, stderr, false) != 0) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); + return 110; + } + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + fprintf(stderr,"ERROR: Found %d bad memory blocks\n", nBad); + return 111; + } + printFooter(stderr, "psArray" ,"Free void pointer array", true); + + return 0; +} + +psS32 testArrayAdd( void ) +{ + int subtest = 0; + float* data; + int nalloc = 5; + int n = 0; + int delta = 5; + + // allocate the array. + psArray* arr = psArrayAlloc(nalloc); + arr->n = n; + + // test arrayAdd until n == nalloc + while (n < nalloc) { + data = psAlloc(sizeof(float)); + arr = psArrayAdd(arr, delta*2, data); // make delta unique versus next delta used. + + subtest++; + if (psMemGetRefCounter(data) != 2) { + // in response of Bug #302 + psError(PS_ERR_UNKNOWN, true, + "psArrayAdd did not increment the data reference count."); + return subtest; + } + + subtest++; + if (arr->nalloc != nalloc) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd expanded the psArray unnecessarily. n=%d", + n); + return subtest; + } + + subtest++; + if (arr->n != ++n) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd did not increment the size of the psArray. n=%d", + n); + return subtest; + } + + subtest++; + if (arr->data[n-1] != data) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd didn't set the element to data. n=%d", + n); + return subtest; + } + + psFree(data); + } + + // now try to add an element when the array is full. + data = psAlloc(sizeof(float)); + arr = psArrayAdd(arr, delta, data); + + // make sure the array was expanded + subtest++; + if (arr->nalloc != nalloc+delta) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd did not expand the psArray when it was already full." + " old nalloc=%d, nalloc=%d, delta=%d", + nalloc, arr->nalloc, delta); + return subtest; + } + nalloc = arr->nalloc; + + subtest++; + if (arr->n != ++n) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd did not increment psArray.n by 1 after expanding it."); + return subtest; + } + + subtest++; + if (arr->data[n-1] != data) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd didn't set the second element to data."); + return subtest; + } + + psFree(data); + + // make the array full again (operation tested already) + while (arr->n < arr->nalloc) { + data = psAlloc(sizeof(float)); + arr = psArrayAdd(arr, 0, data); + psFree(data); + } + nalloc = arr->nalloc; + n = arr->n; + + // now add to full array with delta = 0; verify that the array is + // expanded by 10 + data = psAlloc(sizeof(float)); + arr = psArrayAdd(arr, 0, data); + psFree(data); + + subtest++; + if (arr->nalloc != nalloc+10) { + psError(PS_ERR_UNKNOWN,true, + "psArrayAdd did not expand the psArray by 10 when delta < 1." + " old nalloc=%d, nalloc=%d", + nalloc, arr->nalloc); + return subtest; + } + + psFree(arr); + + return 0; // the value that indicates success is part of the testDescription +} + +psS32 testArrayGetSet( void ) +{ + psArray *test; + int *p1 = psAlloc(sizeof(int)); + int *p2 = psAlloc(sizeof(int)); + int *p3 = psAlloc(sizeof(int)); + test = psArrayAlloc(5); + test->n = 0; + *p1 = 10; + *p2 = 4; + *p3 = 666; + + if ( !psArraySet(test, 0, p1) ) + fprintf(stderr, "ArraySet failed to set S32 at position 0\n"); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psArraySet(test, 10, p1) ) + fprintf(stderr, "ArraySet Improperly set S32 at out of range position\n"); + if ( !psArraySet(test, 1, p2) ) + fprintf(stderr, "ArraySet Failed to set S32 at position 1\n"); + if ( psArrayGet(test, 0) != p1 ) + fprintf(stderr, "ArrayGet Failed to return the correct S32 from position 0\n"); + if ( psArrayGet(test, -1) != p2) + fprintf(stderr, "ArrayGet Failed to return the correct S32 from tail using -1\n"); + // psFree(p1); // free ref from psArrayGet + // psFree(p2); // free ref from psArrayGet + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psArraySet(test, -6, p3) ) + fprintf(stderr, "ArraySet failed to fail using an out of range negative number\n"); + + psFree(test); + psFree(p1); + psFree(p2); + psFree(p3); + + return 0; +} + +psS32 testArrayLength( void ) +{ + psArray *array = psArrayAlloc(5); + + if (psArrayLength(array) != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psArrayLength failed to return the correct length of array.\n"); + return 1; + } + array->n = 5; + if (psArrayLength(array) != 5) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psArrayLength failed to return the correct length of array.\n"); + return 2; + } + array->n++; + if (psArrayLength(array) != 6) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psArrayLength failed to return the correct length of array.\n"); + return 3; + } + psFree(array); + + psArray *emptyArray = NULL; + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psArrayLength(emptyArray) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psArrayLength failed to return -1 for a NULL input array.\n"); + return 4; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psArrayLength((psArray*)vector) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psArrayLength failed to return -1 for an invalid input array.\n"); + return 5; + } + psFree(vector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psBitSet.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psBitSet.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psBitSet.c (revision 12167) @@ -0,0 +1,681 @@ +/** @file tst_psBitSet_01.c + * + * @brief Test driver for psBitSet functions + * + * This test driver contains the following tests for psBitSet test point 1: + * A) Create psBitSet + * B) Set bits + * C) Test bits + * D) Attempt to test negative bit + * E) Attempt to test bit to large + * F) Attempt to test bit in null BitSet + * G) Attempt to set negative bit + * H) Attempt to set bit to large + * I) Attempt to set bit in null BitSet + * J) Free psBitSet + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:52:54 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testBitSet01a(void); +static psS32 testBitSet01b(void); +static psS32 testBitSet01c(void); +static psS32 testBitSet02(void); +static psS32 testBitSet03(void); +static psS32 testBitSet04(void); +static psS32 testBitSet05(void); +static psS32 testBitSet06(void); + +testDescription tests[] = { + {testBitSet01a, 1, "psBitSetAlloc", 0, false}, + {testBitSet01b, 2, "psBitSetSet/psBitSetClear", 0, false}, + {testBitSet01c, 3, "psBitSetTest", 0, false}, + {testBitSet06, 4, "psBitSetOp", 0, false}, + {testBitSet02, 5, "psBitSetOp AND Operator", 0, false}, + {testBitSet03, 6, "psBitSetOp OR Operator", 0, false}, + {testBitSet04, 7, "psBitSetOp XOR Operator", 0, false}, + {testBitSet05, 8, "psBitSetNot", 0, false}, + + {NULL} + }; + + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psBitSet", tests, argc, argv ) ); +} + +psS32 testBitSet01a(void) +{ + psErr* err; + + // Test A - Create psBitSet + fprintf(stderr,"Creating psBitSet with 24 bits...\n"); + psBitSet* bs = psBitSetAlloc(24); + if (bs == NULL) { + psError(PS_ERR_UNKNOWN,true,"Failed to create a psBitSet"); + return 1; + } + if (bs->n != 3) { + psError(PS_ERR_UNKNOWN,true,"Number of bytes for psBitSet incorrect (%ld vs 3)", + bs->n); + return 2; + } + if (bs->bits[0] != 0 || bs->bits[1] != 0 || bs->bits[2] != 0) { + psError(PS_ERR_UNKNOWN,true,"psBitSetAlloc didn't clean ou the bits by default (%x%x%x).", + bs->bits[2],bs->bits[1],bs->bits[0]); + return 3; + } + psFree(bs); + + // Test A - Create psBitSet + fprintf(stderr,"Creating psBitSet with 25 bits...\n"); + bs = psBitSetAlloc(25); + if (bs == NULL) { + psError(PS_ERR_UNKNOWN,true,"Failed to create a psBitSet with 25 bits"); + return 4; + } + if (bs->n != 4) { + psError(PS_ERR_UNKNOWN,true,"Number of bytes for psBitSet incorrect (%ld vs 4)",bs->n); + return 5; + } + psFree(bs); + + psErrorClear(); + psLogMsg(__func__,PS_LOG_INFO,"Following is an error."); + bs = psBitSetAlloc(-4); + if (bs != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetAlloc returned something in case of a negative size"); + return 6; + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psError(PS_ERR_UNKNOWN,true,"psBitSetAlloc didn't generate expected error with size = -4"); + return 7; + } + psFree(err); + + return 0; +} + +psS32 testBitSet01b(void) +{ + char *binOut = NULL; + psBitSet *tempBs = NULL; + psErr* err = NULL; + + psBitSet* bs = psBitSetAlloc(24); + + if (psBitSetTest(bs,0) || + psBitSetTest(bs,2) || + psBitSetTest(bs,23) ) { + + psAbort("psBitSetAlloc failed to clear all bits at allocation."); + } + + // Test B - Set bits + tempBs = bs; + fprintf(stderr,"Setting first bit...\n"); + bs = psBitSetSet(bs, 0); + fprintf(stderr,"Setting third bit...\n"); + bs = psBitSetSet(bs, 2); + fprintf(stderr,"Setting last bit...\n"); + bs = psBitSetSet(bs, 23); + if(bs != tempBs) { + psAbort( "Return pointer not equal to output argument pointer."); + } + if(bs->bits[0] != 0x05) { + psAbort( "Unexpected value for first byte (%d vs 5).", + bs->bits[0]); + } + + + binOut = psBitSetToString(bs); + fprintf(stderr,"%s\n\n", binOut); + psFree(binOut); + + // Test C - Test bits + if (! psBitSetTest(bs,0) || + ! psBitSetTest(bs,2) || + ! psBitSetTest(bs,23) ) { + + psAbort("Failed to set a bit."); + } + + fprintf(stderr,"Clearing first bit...\n"); + bs = psBitSetClear(bs, 0); + fprintf(stderr,"Clearing third bit...\n"); + bs = psBitSetClear(bs, 2); + fprintf(stderr,"Clearing last bit...\n"); + bs = psBitSetClear(bs, 23); + + binOut = psBitSetToString(bs); + fprintf(stderr,"%s\n\n", binOut); + psFree(binOut); + + + if (psBitSetTest(bs,0) || + psBitSetTest(bs,2) || + psBitSetTest(bs,23) ) { + + psAbort("Failed to clear a bit."); + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + if(psBitSetClear(NULL,2) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetClear did not return NULL with NULL bitset"); + return 20; + } + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + if(psBitSetClear(bs,-3) != bs) { + psError(PS_ERR_UNKNOWN,true,"psBitSetClear did not return original bitset"); + return 21; + } + + psLogMsg("testBitSet01b",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + psBitSetSet(bs, -4); + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetSet(bs, -4) didn't generate expected error.\n"); + } + psFree(err); + + psLogMsg("testBitSet01b",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + psBitSetSet(bs, 200); + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetSet(bs, 200) didn't generate expected error.\n"); + } + psFree(err); + + psLogMsg("testBitSet01b",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + psBitSetSet(NULL, 0); + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetSet(NULL,0) didn't generate expected error.\n"); + } + psFree(err); + + psFree(bs); + + return 0; +} + +static psS32 testBitSet01c(void) +{ + psBitSet* bs = psBitSetAlloc(24); + psErr* err = NULL; + + fprintf(stderr,"Setting first bit...\n"); + bs = psBitSetSet(bs, 0); + fprintf(stderr,"Setting third bit...\n"); + bs = psBitSetSet(bs, 2); + fprintf(stderr,"Setting last bit...\n"); + bs = psBitSetSet(bs, 23); + + if (! psBitSetTest(bs,0) || + ! psBitSetTest(bs,2) || + ! psBitSetTest(bs,23) ) { + + psAbort("Set bits returned false."); + } + + psLogMsg("testBitSet01c",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + if(psBitSetTest(bs, -4)) { + psAbort("psBitSetTest returned true with negative bit position.\n"); + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetTest(bs, -4) didn't generate proper error.\n"); + } + psFree(err); + + psLogMsg("testBitSet01c",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + if(psBitSetTest(bs, 200)) { + psAbort("psBitSetTest returned true with too-large bit position.\n"); + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetTest(bs, 200) didn't generate proper error.\n"); + } + psFree(err); + + psLogMsg("testBitSet01c",PS_LOG_INFO,"Following should be an error"); + psErrorClear(); + if (psBitSetTest(NULL, 0)) { + psAbort("psBitSetTest returned true with NULL psBitSet.\n"); + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_NULL) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetTest(NULL, 0) didn't generate proper error.\n"); + } + psFree(err); + + psFree(bs); + + return 0; +} + +psS32 testBitSet02() +{ + char *binOut1 = NULL; + char *binOut2 = NULL; + char *binOut3 = NULL; + + psBitSet* bs1 = psBitSetAlloc(24); + psBitSet* bs2 = psBitSetAlloc(24); + psBitSet* and = psBitSetAlloc(24); + for(psS32 i=0; i<24; i++) { + if ((i & 2) == 0) { + bs1 = psBitSetSet(bs1, i); + } + if ((i & 1) == 0) { + bs2 = psBitSetSet(bs2, i); + } + if (((i & 1) == 0) && ((i & 2) == 0) ) { + and = psBitSetSet(and, i); + } + } + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(and); + fprintf(stderr,"psBitSetOp input is %s, %s. Truth is %s.\n", + binOut1,binOut2,binOut3); + psFree(binOut1); + psFree(binOut2); + psFree(binOut3); + + // Test B - Perform binary AND with psBitSets + psLogMsg(__func__,PS_LOG_INFO,"Perform binary AND with psBitSets"); + psBitSet* outbs = psBitSetAlloc(24); + outbs = psBitSetOp(outbs, bs1, "AND", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp returned a NULL result for AND operation"); + } + + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(and,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with AND operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + + // Test C - Perform binary AND and auto allocate output + psLogMsg(__func__,PS_LOG_INFO,"Perform binary AND and auto allocate output"); + outbs = psBitSetOp(NULL, bs1, "AND", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp failed to create a new psBitSet for the result"); + } + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(and,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with AND operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + + psFree(bs1); + psFree(bs2); + psFree(and); + + return 0; +} + +static psS32 testBitSet03(void) +{ + char *binOut1 = NULL; + char *binOut2 = NULL; + char *binOut3 = NULL; + + psBitSet* bs1 = psBitSetAlloc(24); + psBitSet* bs2 = psBitSetAlloc(24); + psBitSet* or = psBitSetAlloc(24); + for(psS32 i=0; i<24; i++) { + if ((i/2) % 2) { + bs1 = psBitSetSet(bs1, i); + } + if ((i) % 2) { + bs2 = psBitSetSet(bs2, i); + } + if ( ((i/2) % 2) || ((i) % 2) ) { + or = psBitSetSet(or, i); + } + } + + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(or); + fprintf(stderr,"psBitSetOp input is %s, %s. Truth is %s.\n", + binOut1,binOut2,binOut3); + psFree(binOut1); + psFree(binOut2); + psFree(binOut3); + + // Test B - Perform binary AND with psBitSets + psLogMsg(__func__,PS_LOG_INFO,"Perform binary OR with psBitSets"); + psBitSet* outbs = psBitSetAlloc(24); + outbs = psBitSetOp(outbs, bs1, "OR", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp returned a NULL result for OR operation"); + } + + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(or,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with OR operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + + // Test C - Perform binary AND and auto allocate output + psLogMsg(__func__,PS_LOG_INFO,"Perform binary OR and auto allocate output"); + outbs = psBitSetOp(NULL, bs1, "OR", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp failed to create a new psBitSet for the result"); + } + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(or,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with OR operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + outbs = NULL; + + psFree(bs1); + psFree(bs2); + psFree(or); + + return 0; +} + +static psS32 testBitSet04(void) +{ + char *binOut1 = NULL; + char *binOut2 = NULL; + char *binOut3 = NULL; + + psBitSet* bs1 = psBitSetAlloc(24); + psBitSet* bs2 = psBitSetAlloc(24); + psBitSet* xor = psBitSetAlloc(24); + for(psS32 i=0; i<24; i++) { + if ((i/2) % 2) { + bs1 = psBitSetSet(bs1, i); + } + if ((i) % 2) { + bs2 = psBitSetSet(bs2, i); + } + if ( ((i/2) % 2) != ((i) % 2) ) { + xor = psBitSetSet(xor, i); + } + } + + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(xor); + fprintf(stderr,"psBitSetOp input is %s, %s. Truth is %s.\n", + binOut1,binOut2,binOut3); + psFree(binOut1); + psFree(binOut2); + psFree(binOut3); + + // Test B - Perform binary AND with psBitSets + psLogMsg(__func__,PS_LOG_INFO,"Perform binary XOR with psBitSets"); + psBitSet* outbs = psBitSetAlloc(24); + outbs = psBitSetOp(outbs, bs1, "XOR", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp returned a NULL result for XOR operation"); + } + + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(xor,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with XOR operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + + // Test C - Perform binary AND and auto allocate output + psLogMsg(__func__,PS_LOG_INFO,"Perform binary XOR and auto allocate output"); + outbs = psBitSetOp(NULL, bs1, "XOR", bs2); + if (outbs == NULL) { + psAbort("psBitSetOp failed to create a new psBitSet for the result"); + } + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(xor,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(bs2); + binOut3 = psBitSetToString(outbs); + psAbort("psBitSetOp with XOR operator failed.\nInput was %s, %s. Output was %s", + binOut1,binOut2,binOut3); + } + } + psFree(outbs); + outbs = NULL; + + psFree(bs1); + psFree(bs2); + psFree(xor); + + return 0; +} + +static psS32 testBitSet05(void) +{ + char *binOut1 = NULL; + char *binOut2 = NULL; + + psBitSet* bs1 = psBitSetAlloc(24); + psBitSet* not = psBitSetAlloc(24); + for(psS32 i=0; i<24; i++) { + if (i % 2) { + bs1 = psBitSetSet(bs1, i); + } + if (i % 2 == 0) { + not = psBitSetSet(not, i); + } + } + + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(not); + fprintf(stderr,"psBitSetOp input is %s. Truth is %s.\n", + binOut1,binOut2); + psFree(binOut1); + psFree(binOut2); + + // Test B - Perform binary AND with psBitSets + psLogMsg(__func__,PS_LOG_INFO,"Perform binary NOT with psBitSets"); + psBitSet* outbs = psBitSetAlloc(24); + outbs = psBitSetNot(outbs, bs1); + if (outbs == NULL) { + psAbort("psBitSetOp returned a NULL result for NOT operation"); + } + + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(not,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(outbs); + psAbort("psBitSetOp with NOT operator failed.\nInput was %s. Output was %s", + binOut1,binOut2); + } + } + psFree(outbs); + + // Test C - Perform binary AND and auto allocate output + psLogMsg(__func__,PS_LOG_INFO,"Perform binary NOT and auto allocate output"); + outbs = psBitSetNot(NULL, bs1); + if (outbs == NULL) { + psAbort("psBitSetOp failed to create a new psBitSet for the result"); + } + for(psS32 i=0; i<24; i++) { + psBool truth = psBitSetTest(not,i); + psBool res = psBitSetTest(outbs,i); + if ( res != truth) { + binOut1 = psBitSetToString(bs1); + binOut2 = psBitSetToString(outbs); + psAbort("psBitSetOp with NOT operator failed.\nInput was %s. Output was %s", + binOut1,binOut2); + } + } + psFree(outbs); + outbs = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + if(psBitSetNot(NULL,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetNot did not return NULL with NULL input"); + return 30; + } + + psFree(bs1); + psFree(not); + + return 0; +} + +static psS32 testBitSet06(void) +{ + psErr* err; + + psBitSet* bs1 = psBitSetAlloc(24); + psBitSet* bs2 = psBitSetAlloc(40); + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + psBitSet* outbs = psBitSetOp(NULL, bs1, "XOR", bs2); + if (outbs != NULL) { + psAbort("psBitSetOp did not return a NULL result when input sizes differ"); + } + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_SIZE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetOp didn't generate expected error with operands' sizes differed."); + } + psFree(err); + psFree(bs1); + psFree(bs2); + + bs1 = psBitSetAlloc(24); + bs2 = psBitSetAlloc(24); + + outbs = psBitSetAlloc(40); + psBitSet* outbs2 = psBitSetOp(outbs, bs1, "XOR", bs2); + if (outbs2 == NULL) { + psAbort("psBitSetOp failed when input size and output size differed (a recoverable error)."); + } + if (outbs2 != outbs) { + psAbort("psBitSetOp didn't reuse the given output struct."); + } + if (outbs2->n != bs1->n) { + psAbort("psBitSetOp did properly adjust the output psBitSet size."); + } + + psErrorClear(); + psLogMsg(__func__,PS_LOG_INFO,"Following is an error."); + outbs = psBitSetOp(outbs, bs1, "FOO", bs2); + if (outbs != NULL) { + psAbort("psBitSetOp returned something in case of a bogus operation."); + } + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetOp didn't generate expected error with bogus operator."); + } + psFree(err); + + + // try again, though give a valid output bitset -- should free the out upon error to avoid leak. + outbs = psBitSetAlloc(24); + psErrorClear(); + psLogMsg(__func__,PS_LOG_INFO,"Following is an error."); + outbs = psBitSetOp(outbs, bs1, "FOO", bs2); + + err = psErrorLast(); + if (err->code != PS_ERR_BAD_PARAMETER_VALUE) { + psErrorStackPrint(stderr,"Error Stack:"); + psAbort("psBitSetOp didn't generate expected error with bogus operator."); + } + psFree(err); + + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + if(psBitSetOp(outbs,NULL,"AND",bs2) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetOp did not return NULL with NULL input 1 bit set"); + return 40; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + if(psBitSetOp(outbs,bs1,NULL,bs2) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetOp did not return NULL with NULL operator"); + return 41; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error"); + if(psBitSetOp(outbs,bs1,"AND",NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psBitSetOp did not return NULL with NULL input 2 bit set"); + return 42; + } + + psFree(bs1); + psFree(bs2); + psFree(outbs); + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psHash00.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash00.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash00.c (revision 12167) @@ -0,0 +1,64 @@ +/***************************************************************************** + This code will test whether a hash table can be allocated successfully, + then deallocated successfully. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psHash.h" +#define NUM_HASH_TABLE_BUCKETS 10 +psS32 main() +{ + psHash *myHashTable = NULL; + psS32 testStatus = true; + psS32 i = 0; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + printPositiveTestHeader(stdout, + "psHash functions", + "psHashAlloc()"); + + myHashTable = psHashAlloc(NUM_HASH_TABLE_BUCKETS); + + if (myHashTable == NULL) { + fprintf(stderr, "%s: could not allocate a hash table.", __func__); + testStatus = false; + } + + if (myHashTable->n != NUM_HASH_TABLE_BUCKETS) { + fprintf(stderr, "%s: myHashTable->nbucket not set properly.\n", + __func__); + testStatus = false; + + } + + if (myHashTable->buckets == NULL) { + fprintf(stderr, "%s: myHashTable->buckets is NULL.\n", + __func__); + testStatus = false; + + } + + for (i=0;ibuckets[i] != NULL) { + fprintf(stderr, "%s: hash table bucket[%d] not equal to NULL.\n", + __func__, i); + testStatus = false; + } + } + + printFooter(stdout, + "psHash functions", + "psHashAlloc()", + testStatus); + + psFree(myHashTable); + + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/types/tst_psHash01.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash01.c (revision 12167) @@ -0,0 +1,155 @@ +/***************************************************************************** + This code will test whether a hash table can be de-allocated successfully. + *****************************************************************************/ +#include +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psHash.h" +#define NUM_HASH_TABLE_BUCKETS 100 +psS32 imGlobal = 0; + +typedef struct +{ + char *name; +} +ID; + +static void IdFree(ID *id); + +static ID *IdAlloc(const char *name) +{ + ID *id = psAlloc(sizeof(ID)); + psMemSetDeallocator(id,(psFreeFunc)IdFree); + id->name = psStringCopy(name); + + return id; +} + +static void IdFree(ID *id) +{ + imGlobal++; + psFree(id->name); +} + +psS32 main() +{ + psHash *myHashTable = NULL; + psS32 testStatus = true; + psS32 currentId = psMemGetId(); + ID* id = NULL; + ID* replaceId = NULL; + psS32 memLeaks = 0; + psBool retVal = false; + + // Allocate memory for Hash Table + printPositiveTestHeader(stdout,"psHash functions","psHashAlloc"); + myHashTable = psHashAlloc(NUM_HASH_TABLE_BUCKETS); + if(myHashTable == NULL) { + psError(PS_ERR_UNKNOWN,true,"Unable to allocate psHash table"); + return 10; + } + printFooter(stdout,"psHash functions","psHashAlloc",true); + + // Add items to Hash table + id = IdAlloc("IDA"); + printPositiveTestHeader(stdout,"psHash functions","psHashAdd"); + retVal = psHashAdd(myHashTable, "ENTRY00", id); + psFree(id); + if( !retVal) { + psError(PS_ERR_UNKNOWN, true, "psHashAdd unable to add ENTRY00"); + return 1; + } + + id = IdAlloc("IDB"); + retVal = psHashAdd(myHashTable, "ENTRY01", id); + psFree(id); + if (!retVal) { + psError(PS_ERR_UNKNOWN, true, "psHashAdd unable to add ENTRY01"); + return 2; + } + + id = IdAlloc("IDC"); + retVal = psHashAdd(myHashTable, "ENTRY02", id); + psFree(id); + if(!retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd unable to add ENTRY02"); + return 3; + } + + id = IdAlloc("IDD"); + retVal =psHashAdd(myHashTable, "ENTRY03", id); + psFree(id); + if(!retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd unable to add ENTRY03"); + return 4; + } + printFooter(stdout,"psHash functions","psHashAdd",true); + + // Replace item with same key + printPositiveTestHeader(stdout,"psHash replace item","psHashAdd"); + id = IdAlloc("IDE"); + retVal = psHashAdd(myHashTable,"ENTRY02",id); + if(!retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd unable to replace ENTRY02"); + return 5; + } + replaceId = psHashLookup(myHashTable,"ENTRY02"); + if(strcmp(replaceId->name,"IDE") != 0) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd did not replace ENTRY02 with correct item"); + return 6; + } + printFooter(stdout,"psHash replace item","psHashAdd",true); + + // Add with NULL hash table specified + printNegativeTestHeader(stdout,"psHashAdd","NULL hash table","Hash table can not be NULL.",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashAdd with null table"); + retVal = psHashAdd(NULL,"ENTRY04",id); + if(retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd added entry to NULL hash table."); + return 20; + } + printFooter(stdout,"psHashAdd","NULL hash table",true); + + // Add with key to valid hash table NULL + printNegativeTestHeader(stdout,"psHashAdd","NULL key","Hash key can not be NULL.",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashAdd with null key"); + retVal = psHashAdd(myHashTable,NULL,id); + if(retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd added entry to hash table with NULL key."); + return 21; + } + printFooter(stdout,"psHashAdd","NULL hash key",true); + + // Add NULL hash data to valid table and key + printNegativeTestHeader(stdout,"psHashAdd","NULL hash data","Hash data can not be NULL.",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashAdd with null data"); + retVal = psHashAdd(myHashTable,"ENTRY04",NULL); + if(retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashAdd added entry to hash table with NULL data."); + return 22; + } + printFooter(stdout,"psHashAdd","NULL hash data",true); + + // Free hash table + printPositiveTestHeader(stdout,"psHash functions","psHashFree"); + psFree(id); + + psFree(myHashTable); + + if (imGlobal != 5) { + fprintf(stderr, "%s: only (%d/4) entries were freed", + __func__, imGlobal); + testStatus = false; + } + + printFooter(stdout,"psHash functions","psHashFree()",testStatus); + + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (memLeaks != 0) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/types/tst_psHash02.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash02.c (revision 12167) @@ -0,0 +1,113 @@ +/***************************************************************************** + This code will test whether hash tables entries can be inserted correctly, + and retrieved correctly. + + NOTE: Add code to test whether duplicates are handled correctly (use a + small hash table and lots of keys). + *****************************************************************************/ +#include +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psHash.h" +#define NUM_HASH_TABLE_BUCKETS 100 +psS32 imGlobal = 0; + +typedef struct +{ + char *name; +} +ID; +static void IdFree(ID *id); + +static ID *IdAlloc(const char *name) +{ + ID *id = psAlloc(sizeof(ID)); + psMemSetDeallocator(id,(psFreeFunc)IdFree); + id->name = psStringCopy(name); + + return id; +} + +static void IdFree(ID *id) +{ + imGlobal++; + psFree(id->name); +} + +psS32 main() +{ + psHash *myHashTable = NULL; + psS32 testStatus = true; + psS32 i = 0; + ID *id = NULL; + char *myKeys[] = {"ENTRY00", "ENTRY01", "ENTRY02", "ENTRY03", NULL + }; + char *myData[] = {"IDA", "IDB", "IDC", "IDD", NULL + }; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + + printPositiveTestHeader(stdout,"psHash functions","psHashLookup"); + + myHashTable = psHashAlloc(NUM_HASH_TABLE_BUCKETS); + i = 0; + while (myKeys[i] != NULL) { + id = IdAlloc(myData[i]); + psHashAdd(myHashTable, myKeys[i], id); + psFree(id); + i++; + } + + i = 0; + while (myKeys[i] != NULL) { + id = psHashLookup(myHashTable, myKeys[i]); + if (0 != strcmp(myData[i], id->name)) { + fprintf(stderr, "%s: Hash table entry for key %s was %s (should be %s).\n", + __func__, myKeys[i], id->name, myData[i]); + return 1; + } + i++; + } + printFooter(stdout,"psHash functions","psHashLookup",true); + + // Use an invalid key in the hash table: verify no item is returned + printNegativeTestHeader(stdout,"psHashLookup","Invalid key","Key is not found in the table",0); + id = psHashLookup(myHashTable, "BogusKey"); + if (id != NULL) { + fprintf(stderr, "%s: Hash table entry for key %s was not NULL.\n", + __func__, "BogusKey"); + return 2; + } + printFooter(stdout,"psHashLookup","Invalid key",true); + + // Lookup with null table + printNegativeTestHeader(stdout,"psHashLookup","NULL table","Can not lookup with NULL table",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashLookup with null table"); + id = psHashLookup(NULL,"ENTRY01"); + if (id != NULL) { + psError(PS_ERR_UNKNOWN,true,"psHashLookup retrieved an entry from NULL hash table."); + return 3; + } + printFooter(stdout,"psHashLookup","NULL table",true); + + // Lookup with null key + printNegativeTestHeader(stdout,"psHashLookup","NULL key","Can not lookup with NULL key.",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashLookup with null key"); + id = psHashLookup(myHashTable,NULL); + if (id != NULL) { + psError(PS_ERR_UNKNOWN,true,"psHashLookup retrieved an entry with NULL key."); + return 4; + } + printFooter(stdout,"psHashLookup","NULL key",true); + + psFree(myHashTable); + + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (0 != memLeaks) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + return (!testStatus); +} Index: /branches/rel-1-1/psLib/test/types/tst_psHash03.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash03.c (revision 12167) @@ -0,0 +1,142 @@ +/***************************************************************************** + This code will test whether hash tables entries can be removed correctly. + + NOTE: Add code to test whether duplicates are handled correctly. + *****************************************************************************/ +#include +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psHash.h" +#include "psMemory.h" +#define NUM_HASH_TABLE_BUCKETS 100 +psS32 imGlobal = 0; +psS32 currentId = 0; + +typedef struct +{ + char *name; +} +ID; +static void IdFree(ID *id); + +static ID *IdAlloc(const char *name) +{ + ID *id = NULL; + + id = psAlloc(sizeof(ID)); + psMemSetDeallocator(id,(psFreeFunc)IdFree); + + id->name = psStringCopy(name); + + return id; +} + +static void IdFree(ID *id) +{ + imGlobal++; + psFree(id->name); +} + +psS32 main() +{ + psHash *myHashTable = NULL; + psS32 testStatus = true; + psS32 i = 0; + psS32 TotalKeys = 0; + psBool retVal = false; + ID *id = NULL; + ID *ids[4]; + char *myKeys[] = {"ENTRY00", "ENTRY01", "ENTRY02", "ENTRY03", NULL + }; + char *myData[] = {"IDA", "IDB", "IDC", "IDD", NULL + }; + psS32 memLeaks = 0; + + currentId = psMemGetId(); + + printPositiveTestHeader(stdout,"psHash functions","psHashRemove"); + + // Add items to hash table + myHashTable = psHashAlloc(NUM_HASH_TABLE_BUCKETS); + i = 0; + while (myKeys[i] != NULL) { + ids[i] = IdAlloc(myData[i]); + psHashAdd(myHashTable, myKeys[i], ids[i]); + i++; + } + TotalKeys = i - 1; + + // Verify items which were just add to hash table + i = TotalKeys; + while (i >= 0) { + + id = psHashLookup(myHashTable, myKeys[i]); + if (0 != strcmp(myData[i], id->name)) { + fprintf(stderr, "%s: Hash table entry for key %s was %s (should be %s).\n", + __func__, myKeys[i], id->name, myData[i]); + return 1; + } + i--; + } + + // Remove each item from the table and verify item is no longer in the list + i = 0; + while (myKeys[i] != NULL) { + // The psHashRemove() procedure removes the entry from the hash + // table and deletes the data. + retVal = psHashRemove(myHashTable, myKeys[i]); + if (!retVal) { + fprintf(stderr,"%s: Hash table entry not removed.\n",__func__); + return 2; + } + id = psHashLookup(myHashTable, myKeys[i]); + if (id != NULL) { + fprintf(stderr, "%s: Hash table entry for key %s not removed.\n", + __func__, "IDA"); + return 3; + } + i++; + } + printFooter(stdout,"psHash functions","psHashRemove()",true); + + // Use an invalid key in the hash table: verify false is returned + printNegativeTestHeader(stdout,"psHashRemove","Invalid key","Key is not found in table",0); + if (psHashRemove(myHashTable,"BogusKey") ) { + psError(PS_ERR_UNKNOWN,true,"psHashRemove removed an entry with a bogus key."); + return 4; + } + printFooter(stdout,"psHashRemove","Invalid key",true); + + // Remove with null table + printNegativeTestHeader(stdout,"psHashRemove","NULL table","Can not remove with NULL table",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashRemove with null table"); + retVal = psHashRemove(NULL,"ENTRY02"); + if (retVal) { + psError(PS_ERR_UNKNOWN,true,"psHashRemove removed an entry from NULL hash table."); + return 5; + } + printFooter(stdout,"psHashRemove","NULL table",true); + + // Remove with null key + printNegativeTestHeader(stdout,"psHashRemove","NULL key","Can not remove with NULL key",0); + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message: psHashRemove with null key"); + if (psHashRemove(myHashTable,NULL) ) { + psError(PS_ERR_UNKNOWN,true,"psHashRemove removed an entry from NULL key"); + return 6; + } + printFooter(stdout,"psHashRemove","NULL key",true); + + psFree(myHashTable); + for(i=0; i<(TotalKeys+1); i++) { + psFree(ids[i]); + } + memLeaks = psMemCheckLeaks(currentId,NULL,stdout,false); + if (memLeaks != 0) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(true); + + return (!testStatus); +} + Index: /branches/rel-1-1/psLib/test/types/tst_psHash04.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash04.c (revision 12167) @@ -0,0 +1,84 @@ +/***************************************************************************** + This code will test whether the call psHashKeyList() function works. + *****************************************************************************/ +#include +#include "pslib_strict.h" +#include "psTest.h" +#include "psHash.h" +#define NUM_HASH_TABLE_BUCKETS 100 +psS32 imGlobal = 0; + +typedef struct +{ + char *name; +} +ID; +static void IdFree(ID *id); + +static ID *IdAlloc(const char *name) +{ + ID *id = psAlloc(sizeof(ID)); + psMemSetDeallocator(id,(psFreeFunc)IdFree); + + id->name = psStringCopy(name); + + return id; +} + +static void IdFree(ID *id) +{ + imGlobal++; + psFree(id->name); +} + +psS32 main() +{ + psHash *myHashTable = NULL; + psS32 testStatus = true; + psS32 i = 0; + char *myKeys[] = {"ENTRY00", "ENTRY01", "ENTRY02", "ENTRY03", NULL + }; + char *myData[] = {"IDA", "IDB", "IDC", "IDD", NULL + }; + psS32 currentId = psMemGetId(); + psS32 memLeaks = 0; + psList *myLinkList = NULL; + psListElem *tmp = NULL; + ID* id = NULL; + + printPositiveTestHeader(stdout,"psHash functions","psHashKeyList()"); + myHashTable = psHashAlloc(NUM_HASH_TABLE_BUCKETS); + i = 0; + while (myKeys[i] != NULL) { + id = IdAlloc(myData[i]); + psHashAdd(myHashTable, myKeys[i], id); + psFree(id); + i++; + } + myLinkList = psHashKeyList(myHashTable); + tmp = myLinkList->head; + while (tmp != NULL) { + printf("Linked List Entries: %s\n", (char *) tmp->data); + tmp = tmp->next; + } + printFooter(stdout,"psHash functions","psHashKeyList()",testStatus); + psFree(myLinkList); + + printNegativeTestHeader(stdout,"psHashKeyList","NULL table","Can not lookup with NULL table",0); + myLinkList = psHashKeyList(NULL); + if(myLinkList != NULL) { + psError(PS_ERR_UNKNOWN,true,"psHashKeyList retrieved a key list from a NULL table."); + return 1; + } + printFooter(stdout,"psHashKeyList","NULL table",true); + + psFree(myHashTable); + + memLeaks = psMemCheckLeaks(currentId,NULL,stderr,false); + if (memLeaks != 0) { + psAbort("Memory Leaks! (%d leaks)", memLeaks); + } + psMemCheckCorruption(1); + + return(!testStatus); +} Index: /branches/rel-1-1/psLib/test/types/tst_psHash05.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psHash05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psHash05.c (revision 12167) @@ -0,0 +1,172 @@ +/** @file tst_psHash05.c +* +* @brief Contains the tests for psHash.[ch] +* +* +* @author Robert DeSonia, MHPCC +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-07-13 02:47:01 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 hashToArray( void ); + +testDescription tests[] = { + {hashToArray, 789, "psHashToArray", 0, false}, + {NULL} + }; + +static void printIntArray(char* name, psArray* arr) +{ + if (arr == NULL) { + printf("%s = NULL\n",name); + return; + } + + printf("%s = {",name); + for (int i = 0; i < arr->n; i++) { + if (arr->data[i] == NULL) { + printf("NULL"); + } else { + printf("%d",*(int*)arr->data[i]); + } + if (i != arr->n-1) { + printf(","); + } + } + printf("}"); +} + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( ! runTestSuite( stderr, "psHash", tests, argc, argv ) ); +} + +psS32 hashToArray( void ) +{ + int testNum = 0; + psArray* array; + #define BUCKETS 10 + + psHash* hash = psHashAlloc(BUCKETS); + char key[2] = "A"; + bool found[BUCKETS]; + + for (int i = 0; i < BUCKETS; i++) { + + array = psHashToArray(hash); + + // return non-null? + testNum++; + if (array == NULL) { + psError(PS_ERR_UNKNOWN, false, + "Failed to create an array from a psHash of %d elements.", + i); + return testNum; + } + + // the size correct + testNum++; + if (array->n != i) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, false, + "psHashToArray created a psArray of %d elements from a psHash of %d elements.", + array->n, i); + return testNum; + } + + // the values correct? + + // zero out the found boolean vector + for (int j = 0; j < i; j++) { + found[j] = false; + } + + // check if all the items in array are valid + for (int k = 0; k < array->n; k++) { + int* item = array->data[k]; + + testNum++; + if (item == NULL) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, true, + "The array position %d was NULL.", + k); + return testNum; + } + + testNum++; + if (*item < 0 || *item >= BUCKETS) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, true, + "The array position %d was invalid (%d).", + k,*item); + return testNum; + } + + testNum++; + if (found[*item]) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, true, + "The array position %d was a duplicate (%d).", + k,*item); + return testNum; + } + + testNum++; + if (psMemGetRefCounter(item) != 2) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, true, + "The array position %d was not properly reference counted (%d).", + k,psMemGetRefCounter(item)); + return testNum; + } + + found[*item] = true; + } + + // check that all the items in psHash was found + for (int j = 0; j < i; j++) { + testNum++; + if (! found[j]) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, true, + "Item %d not found in array.", + j); + return testNum; + } + } + + psFree(array); + + // add one element + int* value = psAlloc(sizeof(int)); + *value = i; + psHashAdd(hash, key, value); + *key += 1; // increment the key value + + psFree(value); + } + + psFree(hash); + + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error."); + array = psHashToArray(NULL); + testNum++; + if (array != NULL) { + printIntArray("array",array); + psError(PS_ERR_UNKNOWN, false, + "psHashToArray returned non-null psArray given a null psHash."); + return testNum; + } + + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psList.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psList.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psList.c (revision 12167) @@ -0,0 +1,1320 @@ +/** @file tst_psList.c + * + * @brief Contains the tests for psList.[ch] + * + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-09-26 01:47:22 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "psTest.h" +#include "pslib_strict.h" + +void printListInt(psList* list); + + +static psS32 testListAlloc(void); +static psS32 testListAdd(void); +static psS32 testListGet(void); +static psS32 testListRemove(void); +static psS32 testListConvert(void); +static psS32 testListIterator(void); +static psS32 testListFree(void); +static psS32 testListSort(void); +static psS32 testListAddAfter(void); +static psS32 testListAddBefore(void); +static psS32 testListLength(void); + +testDescription tests[] = { + {testListAlloc,487,"psListAlloc",0,false}, + {testListAdd,488,"psListAdd",0,false}, + {testListGet,489,"psListGet",0,false}, + {testListRemove,490,"psListRemove",0,false}, + {testListConvert,491,"psListConvert",0,false}, + {testListIterator,494,"psListIterator",0,false}, + {testListFree,627,"psListFree",0,false}, + {testListSort,624,"psListSort",0,false}, + {testListAddAfter,811,"psListAddAfter",0,false}, + {testListAddBefore,811,"psListAddBefore",0,false}, + {testListLength,666,"testListLength",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if (! runTestSuite(stderr,"psList",tests,argc,argv) ) { + psError(PS_ERR_UNKNOWN,true,"One or more tests failed"); + return 1; + } + return 0; +} + +psS32 testListAlloc(void) +{ + psList* list; + psS32 ref; + float* data; + + psLogMsg(__func__,PS_LOG_INFO,"psListAlloc shall create a psList with either 0 or 1 element."); + + data = psAlloc(sizeof(float)); + + // if psListAlloc is invoked with a NULL parameter, it shall return an + // empty psList struct with head=tail=NULL and n=0. Otherwise, it shall + // return a psList of one element (head=tail=data, n=1). + // Test requirement SDR-167 + list = psListAlloc(NULL); + if (list == NULL) { + psError(PS_ERR_UNKNOWN, true,"psListAlloc failed to return a list."); + return 1; + } + if (list->head != NULL || list->tail != NULL) { + psError(PS_ERR_UNKNOWN, true,"head and/or tail was not NULL for empty list."); + return 2; + } + if (list->n != 0) { + psError(PS_ERR_UNKNOWN, true,"size of list wasn't zero for empty list."); + return 3; + } + + psFree(list); + + // Test requirement SDR-165 + list = psListAlloc(data); + if (list == NULL) { + psError(PS_ERR_UNKNOWN, true,"psListAlloc failed to return a list."); + return 4; + } + + if (list->head == NULL || list->tail == NULL) { + psError(PS_ERR_UNKNOWN, true,"head and/or tail was NULL for one-element new list."); + return 5; + } + + if (list->head->data != data || list->tail->data != data) { + psError(PS_ERR_UNKNOWN, true,"head and/or tail didn't point to data's node for one-element new list."); + return 6; + } + + if (list->n != 1) { + psError(PS_ERR_UNKNOWN, true,"size of list wasn't correctly set for new, one-element list."); + return 7; + } + + ref = psMemGetRefCounter(data); + if (ref != 2) { + psError(PS_ERR_UNKNOWN, true,"psList didn't increment reference count of data (%d.",ref); + return 8; + } + + psFree(list); + + psFree(data); + + return 0; +} + +psS32 testListAddAfter(void) +{ + psList* list = NULL; + psS32* data = NULL; + psS32* data1 = NULL; + psS32* data2 = NULL; + psListIterator *currentIterator = NULL; + + data = psAlloc(sizeof(psS32)); + *data = 1; + data1 = psAlloc(sizeof(psS32)); + *data1 = 2; + data2 = psAlloc(sizeof(psS32)); + *data2 = 3; + + list = psListAlloc(data); + currentIterator = psListIteratorAlloc(list,PS_LIST_HEAD,true); + + // Add data after HEAD and verify data + // Test requirement SDR-755 + if(!psListAddAfter(currentIterator,data1)) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter failed to add item"); + return 1; + } + if(*(psS32*)list->head->next->data != 2) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter did not add the item properly"); + return 2; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data1) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAddAfter didn't increment the data reference count."); + return 20; + } + psFree(currentIterator); + + currentIterator = psListIteratorAlloc(list,PS_LIST_TAIL,true); + + // Add data after TAIL and verify data + if(!psListAddAfter(currentIterator,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter failed to add item"); + return 3; + } + if(*(psS32*)list->tail->data != 3) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter did not add the item properly"); + return 4; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data2) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAddAfter didn't increment the data reference count."); + return 40; + } + + // Verify error message generated with data pointer is NULL + psLogMsg(__func__,PS_LOG_INFO,"NULL data pointer should generate error message"); + if(psListAddAfter(currentIterator,NULL)) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter should have generated error."); + return 5; + } + + // Verify error message generated with iterator NULL + psLogMsg(__func__,PS_LOG_INFO,"NULL iterator should generate error message"); + if(psListAddAfter(NULL,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter should have generated error."); + return 6; + } + + // Verify error message is generate with non-mutable iterator + psLogMsg(__func__,PS_LOG_INFO,"Non-mutable list should generate error message"); + currentIterator->mutable = false; + if(psListAddAfter(currentIterator,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddAfter should have generated error for non-mutable list add"); + return 7; + } + currentIterator->mutable = true; + + psFree(data); + psFree(data1); + psFree(data2); + psFree(list); + + return 0; +} + +psS32 testListAddBefore(void) +{ + psList* list = NULL; + psS32* data1 = NULL; + psS32* data2 = NULL; + psListIterator *currentIterator = NULL; + + data1 = psAlloc(sizeof(psS32)); + *data1 = 2; + data2 = psAlloc(sizeof(psS32)); + *data2 = 3; + + list = psListAlloc(NULL); + currentIterator = psListIteratorAlloc(list,PS_LIST_HEAD,true); + + // Add data before HEAD and verify data + // Test requirement SDR-756 + if(!psListAddBefore(currentIterator,data1)) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore failed to add item"); + return 1; + } + if(*(psS32*)list->head->data != 2) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore did not add the item properly"); + return 2; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data1) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAddBefore didn't increment the data reference count."); + return 20; + } + psFree(currentIterator); + + currentIterator = psListIteratorAlloc(list,PS_LIST_TAIL,true); + + // Add data after TAIL and verify data + if(!psListAddBefore(currentIterator,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore failed to add item"); + return 3; + } + if(*(psS32*)list->tail->prev->data != 3) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore did not add the item properly"); + return 4; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data2) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAddBefore didn't increment the data reference count."); + return 40; + } + + // Verify error message generated with data pointer is NULL + psLogMsg(__func__,PS_LOG_INFO,"NULL data pointer should generate error message"); + if(psListAddBefore(currentIterator,NULL)) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore should have generated error."); + return 5; + } + + // Verify error message generated with iterator NULL + psLogMsg(__func__,PS_LOG_INFO,"NULL iterator should generate error message"); + if(psListAddBefore(NULL,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore should have generated error."); + return 6; + } + + // Verify error message is generate with non-mutable iterator + psLogMsg(__func__,PS_LOG_INFO,"Non-mutable list should generate error message"); + currentIterator->mutable = false; + if(psListAddBefore(currentIterator,data2)) { + psError(PS_ERR_UNKNOWN,true,"psListAddBefore should have generated error for non-mutable list add"); + return 7; + } + currentIterator->mutable = true; + + psFree(data1); + psFree(data2); + psFree(list); + + return 0; +} + +psS32 testListAdd(void) +{ + psList* list = NULL; + psS32* data = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"psListAdd shall add an element to list"); + + /* + psListAdd(list,data,where) should be tested in the instance where: + + 1. list is NULL (error) + 2. data is NULL (error, list should not grow) + 3. where is PS_LIST_HEAD or PS_LIST_TAIL + 4. where is not PS_LIST_* but <0 + 5. where is >0 + */ + + data = psAlloc(sizeof(psS32)); + *data = 1; + + // 1. list is NULL (error) + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for using NULL list."); + if (psListAdd(NULL,PS_LIST_HEAD,data)) { + psError(PS_ERR_UNKNOWN, true,"psListAdd was given a NULL list, but returned a true/success."); + return 1; + } + + list = psListAlloc(data); + psFree(data); + if (list->n != 1) { + psError(PS_ERR_UNKNOWN, true,"psListAlloc didn't create a list properly."); + return 2; + } + + // 2. data is NULL (error, list should not grow) + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error msg to add NULL data"); + if (psListAdd(list, PS_LIST_HEAD,NULL)) { + psError(PS_ERR_UNKNOWN, true,"psListAdd successfully added a NULL data item?"); + return 40; + } + if ( list->n != 1) { + psError(PS_ERR_UNKNOWN, true,"psListAdd with a NULL data element changed the list size or returned success."); + return 3; + } + + // 3. where is PS_LIST_HEAD or PS_LIST_TAIL + data = psAlloc(sizeof(psS32)); + *data = 2; + if ( ! psListAdd(list,PS_LIST_HEAD,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add a data item to head."); + return 21; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 20; + } + psFree(data); + + // verify that the size incremented + if (list->n != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the size by one"); + return 4; + } + + // verify that the head is the inserted data item + if (*(psS32*)list->head->data != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd with PS_LIST_HEAD didn't insert at the head."); + return 5; + } + + data = psAlloc(sizeof(psS32)); + *data = 3; + if ( ! psListAdd(list,PS_LIST_TAIL,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add a data item to tail."); + return 21; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 22; + } + psFree(data); + // verify that the size incremented + if (list->n != 3) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the size by 1"); + return 6; + } + + // verify that the head is still the same + if (*(psS32*)list->head->data != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd with PS_LIST_TAIL modified the head."); + return 7; + } + + // verify that the tail is the data item inserted + if (*(psS32*)list->tail->data != 3) { + psError(PS_ERR_UNKNOWN, true,"psListAdd with PS_LIST_TAIL didn't insert at the tail."); + return 8; + } + + // 4. where is not PS_LIST_* but <0 + + data = psAlloc(sizeof(psS32)); + *data = 4; + psLogMsg(__func__,PS_LOG_INFO,"Following should error with invalid insert location"); + + if ( psListAdd(list,-10,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd successfully added data to a -10 position?"); + return 30; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data) != 1) { + psError(PS_ERR_UNKNOWN, true,"psListAdd incremented the data reference count."); + return 24; + } + psFree(data); + // verify that the size wasn't incremented + if (list->n != 3) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't insert to head when where was invalid."); + return 9; + } + + // 5. where is >0 + data = psAlloc(sizeof(psS32)); + *data = 5; + + if ( ! psListAdd(list,1,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add data to 1 position."); + return 30; + } + // Test requirement SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 25; + } + psFree(data); + // verify that the size incremented + if (list->n != 4 || *(psS32*)list->head->next->data != 5) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't insert to position #1."); + return 10; + } + + data = psAlloc(sizeof(psS32)); + *data = 6; + if ( ! psListAdd(list,3,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add data to 4 position."); + return 31; + } + // Test requirment SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 26; + } + psFree(data); + // verify that the size incremented + if (list->n != 5 || *(psS32 *)list->head->next->next->next->data != 6) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't insert to position #4."); + return 50; + } + + data = psAlloc(sizeof(psS32)); + *data = 7; + // Test requirment SDR-169 + if ( ! psListAdd(list,-2,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add data to 2 position."); + return 32; + } + + // Test requirment SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 28; + } + psFree(data); + // verify that the size incremented + if (list->n != 6 || *(psS32 *)list->tail->prev->prev->data != 7) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't insert to position #2."); + return 11; + } + + // Test requirement SDR-757 + data = psAlloc(sizeof(psS32)); + *data = 8; + psLogMsg(__func__,PS_LOG_INFO,"Following should be a warning."); + + if ( ! psListAdd(list,9,data) ) { + psError(PS_ERR_UNKNOWN, true,"psListAdd failed to add data to a 9 position?"); + return 30; + } + // Test requirment SDR-175 + if (psMemGetRefCounter(data) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListAdd didn't increment the data reference count."); + return 29; + } + if(list->n != 7 || *(psS32 *)list->tail->data != 8) { + printListInt(list); + psError(PS_ERR_UNKNOWN,true,"psListAdd didn't place added item at tail."); + return 12; + } + + psFree(data); + + psFree(list); + + return 0; +} + +void printListInt(psList* list) +{ + psS32* data = NULL; + psBool first = true; + + psListIterator* iter = psListIteratorAlloc(list,PS_LIST_HEAD,true); + + while ( (data=(psS32*)psListGetAndIncrement(iter)) != NULL ) { + if (!first) { + printf(", %d",*(psS32*)data); + } else { + printf("%d",*(psS32*)data); + first = false; + } + } + + printf(".\n"); +} + + +psS32 testListGet(void) +{ + psList* list = NULL; + psS32* data; + + /* + psListGet(list,which) shall be tested with the following instances + + 1. list is NULL. + 2. which>0 and whichlist.n. + 4. which=PS_LIST_HEAD + 5. which=PS_LIST_NEXT + 6. which=PS_LIST_TAIL + 7. which=PS_LIST_PREV + 8. which<0 and not any PS_LIST_* values + */ + + // 1. list is NULL. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + if (psListGet(list,PS_LIST_HEAD) != NULL) { + psError(PS_ERR_UNKNOWN, true,"psListGet didn't return NULL given a NULL list."); + return 1; + }; + + // create a list + data = psAlloc(sizeof(psS32)); + *data = 0; + list = psListAlloc(data); + psFree(data); + + data = psAlloc(sizeof(psS32)); + *data = 1; + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + + data = psAlloc(sizeof(psS32)); + *data = 2; + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + + data = psAlloc(sizeof(psS32)); + *data = 3; + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + + // 2. which>0 and which=list.n. + data = (psS32*)psListGet(list,5); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, true,"psListGet failed with which=5"); + return 4; + } + data = (psS32*)psListGet(list,4); + if (data != NULL) { + psError(PS_ERR_UNKNOWN, true,"psListGet failed with which=4"); + return 5; + } + + // 4. which=PS_LIST_HEAD + data = (psS32*)psListGet(list,PS_LIST_HEAD); + if (data == NULL || *data != 0) { + psError(PS_ERR_UNKNOWN, true,"psListGet failed with which=PS_LIST_HEAD"); + return 6; + } + + // 6. which=PS_LIST_TAIL + data = (psS32*)psListGet(list,PS_LIST_TAIL); + if (data == NULL || *data != 3) { + psError(PS_ERR_UNKNOWN, true,"psListGet failed with which=PS_LIST_TAIL"); + return 8; + } + + data = (psS32*)psListGet(list,-2); + if (data == NULL || *data !=2) { + psError(PS_ERR_UNKNOWN,true,"psListGet failed with location=-2"); + return 9; + } + + psFree(list); + + return 0; +} + +psS32 testListRemove(void) +{ + psList* list = NULL; + psS32* data; + int items = 15; + + /* + psListRemove(list,data,which) should be tested under the following conditions: + + 1. list is NULL + 2. which is PS_LIST_HEAD (remove first element of list) + 3. which is PS_LIST_TAIL (remove last element of list) + 4. which is PS_LIST_NEXT (element right of cursor [which should be head,tail, and neither]) + 5. which is PS_LIST_PREV (element left of cursor [which should be head,tail, and neither]) + 6. which is PS_LIST_UNKNOWN and data=NULL (error) + 7. which is PS_LIST_UNKNOWN and data=[head,tail,other list items] + 8. which is PS_LIST_UNKNOWN and data!=NULL and data!=any element in list + + In all conditions that are not an error, list.n shall be decremented and only the specified element + shall be removed. After each step, list.n should be checked to verify that it is the true + number of elements in list. + */ + + // 1. list is NULL. + psLogMsg(__func__,PS_LOG_INFO,"Following should be an error"); + if (psListRemove(list,PS_LIST_HEAD)) { + psError(PS_ERR_UNKNOWN, true,"psListRemove didn't return false given a NULL list."); + return 1; + }; + + // create a list + list = psListAlloc(NULL); + + for (psS32 lcv=0;lcvn != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + // Test requirement SDR-176 + if (psMemGetRefCounter(data1) != 1) { + psError(PS_ERR_UNKNOWN, true,"psListRemove didn't decrement the data reference count."); + return 20; + } + psMemDecrRefCounter(data1); + + // 3. which is PS_LIST_TAIL (remove last element of list) + data = psListGet(list,PS_LIST_TAIL); + // Test requirement SDR-173 + if ( (! psListRemove(list,PS_LIST_TAIL)) || + (psListGet(list,PS_LIST_TAIL) == data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove PS_LIST_TAIL"); + return 1; + } + + if (list->n != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + + data = psListGet(list,-2); + // Test requirement SDR-173 + if ( (! psListRemove(list,-2)) || + (psListGet(list,-2) == data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove from location -2"); + return 11; + } + + if (list->n != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + + // 6. psListRemoveData where data=NULL (error) + psLogMsg(__func__,PS_LOG_INFO,"Next message should be an error"); + if (psListRemoveData(list,NULL)) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"removed something for PS_LIST_UNKNOWN with data=NULL"); + return 1; + } + + // 7. which is PS_LIST_UNKNOWN and data=[head,tail,other list items] + data = psListGet(list,PS_LIST_HEAD); + // Test requirement SDR-762 + if ( (! psListRemoveData(list,data)) || + (psListGet(list,PS_LIST_HEAD) == data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove PS_LIST_UNKNOWN @ PS_LIST_HEAD"); + return 1; + } + + if (list->n != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + + psS32* data2 = psListGet(list,PS_LIST_TAIL); + psMemIncrRefCounter(data2); + if ( (!psListRemoveData(list,data2)) || + (psListGet(list,PS_LIST_TAIL) == data2) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove PS_LIST_UNKNOWN @ PS_LIST_TAIL"); + return 1; + } + + if (list->n != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + // Test requirement SDR-176 + if (psMemGetRefCounter(data2) != 1) { + psError(PS_ERR_UNKNOWN, true,"psListRemoveData didn't decrement the data reference count."); + return 20; + } + psMemDecrRefCounter(data2); + + data = psListGet(list,1); + if ( (! psListRemoveData(list,data))|| + (psListGet(list,1) == data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove data @ which=1"); + return 1; + } + + if (list->n != --items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't decrement size properly to %d.",items); + return 1; + } + + // 8. data!=NULL and data!=any element in list + psLogMsg(__func__,PS_LOG_INFO,"Next message should be an error"); + // Test requirement SDR-764 + if ( psListRemoveData(list,data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"removed something for PS_LIST_UNKNOWN with previously removed item"); + return 1; + } + + if (list->n != items) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"size not %d, as expected.",items); + return 1; + } + + // clear out the list + while (items > 1) { + psListRemove(list,PS_LIST_HEAD); + items--; + } + + data = psListGet(list,PS_LIST_HEAD); + if ( (! psListRemove(list,PS_LIST_HEAD)) || + (psListGet(list,PS_LIST_HEAD) == data) ) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Failed to remove last element"); + return 1; + } + + if (list->n != 0) { + printListInt(list); + psError(PS_ERR_UNKNOWN, true,"Didn't remove all the elements."); + return 1; + } + + psLogMsg(__func__,PS_LOG_INFO,"NULL list in psListRemoveData should generate error message."); + if(psListRemoveData(NULL,data)) { + psError(PS_ERR_UNKNOWN,true,"psListRemoveData should have generated an error with NULL list"); + return 2; + } + + psFree(list); + + return 0; + +} + +psS32 testListConvert(void) +{ + + psList* list = NULL; + psArray* arr = NULL; + psS32* data; + + /* + array=psListToArray(list) shall take each element of the list, increment + their reference, and insert them into the returned fresh psPtr array. + The list shall not be changed, except for the element reference increment. + */ + + // test dlist -> array + + // create a list + list = psListAlloc(NULL); + for (psS32 lcv=0;lcv<15;lcv++) { + data = psAlloc(sizeof(psS32)); + *data = lcv; + psListAdd(list,PS_LIST_TAIL,data); + psMemDecrRefCounter(data); + } + + arr = psListToArray(list); + + if (arr->n != 15 || list->n != 15) { + psError(PS_ERR_UNKNOWN, true,"The created array didn't have the proper size"); + return 1; + } + for (psS32 i=0;in;i++) { + if (i != *(psS32*)arr->data[i]) { + psError(PS_ERR_UNKNOWN, true,"Element %d of array is incorrect (%d).", + i,*(psS32*)arr->data[i]); + return 1; + } + if (i != *(psS32*)psListGet(list,i)) { + psError(PS_ERR_UNKNOWN, true,"Element %d of list is incorrect (%d).", + i,*(psS32*)arr->data[i]); + return 1; + } + if (psMemGetRefCounter(arr->data[i]) != 2) { + psError(PS_ERR_UNKNOWN, true,"Element %d had wrong reference count (%ld).", + i,psMemGetRefCounter(arr->data[i])); + return 1; + } + } + + psFree(arr); + psFree(list); + + // test array -> dlist + + // create an array + arr = psArrayAlloc(15); + arr->n = arr->nalloc; + for (psS32 lcv=0;lcv<15;lcv++) { + data = psAlloc(sizeof(psS32)); + *data = lcv; + arr->data[lcv] = data; + } + + list = psArrayToList(arr); + + if (arr->n != 15 || list->n != 15) { + psError(PS_ERR_UNKNOWN, true,"The created array didn't have the proper size"); + return 1; + } + for (psS32 i=0;in;i++) { + if (i != *(psS32*)arr->data[i]) { + psError(PS_ERR_UNKNOWN, true,"Element %d of array is incorrect (%d).", + i,*(psS32*)arr->data[i]); + return 1; + } + if (i != *(psS32*)psListGet(list,i)) { + psError(PS_ERR_UNKNOWN, true,"Element %d of list is incorrect (%d).", + i,*(psS32*)arr->data[i]); + return 1; + } + if (psMemGetRefCounter(arr->data[i]) != 2) { + psError(PS_ERR_UNKNOWN, true,"Element %d had wrong reference count (%ld).", + i,psMemGetRefCounter(arr->data[i])); + return 1; + } + } + + psFree(arr); + psFree(list); + + // now, make sure if input array/list is NULL, output is NULL + + arr = psListToArray(NULL); + if (arr != NULL) { + psError(PS_ERR_UNKNOWN, true,"psListToArray didn't return NULL when given NULL"); + return 1; + } + + list = psArrayToList(NULL); + if (list != NULL) { + psError(PS_ERR_UNKNOWN, true,"psArrayToList didn't return NULL when given NULL"); + return 1; + } + + // now, see what happens with a zero-size array/list + arr = psArrayAlloc(1); + arr->n = 0; + list = psArrayToList(arr); + if (list == NULL) { + psError(PS_ERR_UNKNOWN, true,"psArrayToList didn't create an empty list from an " + "empty array."); + return 1; + } + psFree(arr); + psFree(list); + + list = psListAlloc(NULL); + arr = psListToArray(list); + if (arr == NULL) { + psError(PS_ERR_UNKNOWN, true,"psArrayToList didn't create an empty array from an " + "empty list."); + return 1; + } + psFree(arr); + psFree(list); + + return 0; +} + +psS32 testListIterator(void) +{ + psList* list = NULL; + psS32* data; + + psLogMsg(__func__,PS_LOG_INFO," psListSetIterator/psListGetNext/psListGetPrev" + " shall move the list cursor to the specified location"); + + /* + psDlistSetIterator(list,where) shall: + + 1. output error message and do nothing if list=NULL + 2. set list.cursor to list.head if where=PS_LIST_HEAD + 3. set list.cursor to list.tail if where=PS_LIST_TAIL + 4. set list.cursor to list.cursor->next if where=PS_LIST_NEXT + 5. set list.cursor to list.cursor->prev if where=PS_LIST_PREV + 6. leave list.cursor untouched if where=PS_LIST_UNKNOWN or PS_LIST_CURRENT + + psDlistGetNext(list) shall be functionally equivalent to + psDlistSetIterator(list,PS_LIST_NEXT) but returns list.cursor. + + psDlistGetPrev(list) shall be functionally equivalent to + psDlistSetIterator(list,PS_LIST_PREV) but returns list.cursor. + */ + + // create a list + list = psListAlloc(NULL); + for (psS32 lcv=0;lcv<15;lcv++) { + data = psAlloc(sizeof(psS32)); + *data = lcv; + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + } + + psListIterator* iter = psListIteratorAlloc(list,PS_LIST_HEAD,true); + if (iter == NULL) { + psError(PS_ERR_UNKNOWN, true,"Failed to make an iterator."); + return 22; + } + + // 1. output error message and do nothing if iterator=NULL + psListIteratorSet(NULL,PS_LIST_HEAD); + if (psListIteratorSet(NULL,PS_LIST_HEAD)) { + psError(PS_ERR_UNKNOWN, true,"Success while setting position of a NULL iterator?"); + return 23; + } + + // Attempt to get next with NULL iterator + if ( psListGetAndIncrement(NULL) != NULL ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL when NULL iterator specified"); + return 24; + } + + // Attempt to get previous with NULL iterator + if( psListGetAndDecrement(NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL when NULL iterator specified"); + return 25; + } + + // 3. set list.cursor to list.tail if where=PS_LIST_TAIL + + if (!psListIteratorSet(iter,PS_LIST_TAIL) || + *(psS32*)iter->cursor->data != 14 || + iter->index != 14) { + psError(PS_ERR_UNKNOWN, true,"Didn't successfully move cursor to tail."); + return 1; + } + + // 2. set list.cursor to list.head if where=PS_LIST_HEAD + if (!psListIteratorSet(iter,PS_LIST_HEAD) || + *(psS32*)iter->cursor->data != 0 || + iter->index != 0) { + psError(PS_ERR_UNKNOWN, true,"Didn't successfully move cursor to head."); + return 2; + } + + // test psListGetPrevious/Next + if (*(psS32*)psListGetAndIncrement(iter) != 0) { + psError(PS_ERR_UNKNOWN, true,"psListGetNext didn't move cursor to next."); + return 8; + } + if (*(psS32*)psListGetAndIncrement(iter) != 1) { + psError(PS_ERR_UNKNOWN, true,"psListGetNext didn't move cursor to next."); + return 9; + } + if (*(psS32*)psListGetAndIncrement(iter) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListGetNext didn't move cursor to next."); + return 10; + } + + if (*(psS32*)psListGetAndDecrement(iter) != 3) { + psError(PS_ERR_UNKNOWN, true,"psListGetPrevious didn't move cursor to previous."); + return 11; + } + if (*(psS32*)psListGetAndDecrement(iter) != 2) { + psError(PS_ERR_UNKNOWN, true,"psListGetPrevious didn't move cursor to previous."); + return 12; + } + if (*(psS32*)psListGetAndDecrement(iter) != 1) { + psError(PS_ERR_UNKNOWN, true,"psListGetPrevious didn't move cursor to previous.."); + return 13; + } + if (*(psS32*)psListGetAndDecrement(iter) != 0) { + psError(PS_ERR_UNKNOWN, true,"psListGetPrevious didn't move cursor to previous.."); + return 14; + } + if (psListGetAndDecrement(iter) != NULL) { + psError(PS_ERR_UNKNOWN, true,"psListGetPrevious moved cursor beyond head."); + return 15; + } + if (psListGetAndIncrement(iter) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psListGetNext should return NULL when above head"); + return 22; + } + if (*(psS32*)psListGetAndIncrement(iter) != 0 ) { + psError(PS_ERR_UNKNOWN,true,"psListGetNext didn't move cursor to next."); + return 23; + } + + psListIteratorSet(iter,PS_LIST_TAIL); // works according to an above test + if (*(psS32*)psListGetAndIncrement(iter) != 14) { + psError(PS_ERR_UNKNOWN, true,"psListGetNext moved cursor beyond tail."); + return 16; + } + if ((psListGetAndIncrement(iter) != NULL) || (!iter->offEnd)) { + psError(PS_ERR_UNKNOWN, true,"psListGetNext moved cursor beyond tail."); + return 17; + } + if(psListGetAndDecrement(iter) != NULL) { + psError(PS_ERR_UNKNOWN,true,"psListGetPrevious did not return NULL when offEnd is true"); + return 18; + } + if(iter->offEnd) { + psError(PS_ERR_UNKNOWN,true,"psListGetPrevious did not move back onto the list."); + return 19; + } + if(*(psS32*)psListGetAndDecrement(iter) != 14) { + psError(PS_ERR_UNKNOWN,true,"psListGetPrevious did not return correct value of tail."); + return 20; + } + + psFree(list); + + return 0; +} + +psS32 testListFree(void) +{ + float* data[15]; + psList* list; + + /* + Call psDlistAlloc to create a doubly linked list. + + Create several data items and add them to the list. + + Verify the data item's reference counter are incremented after adding to the list. + (not really needed, as psListAdd is tested elsewhere) + */ + + list = psListAlloc(NULL); + for (psS32 lcv=0;lcv<15;lcv++) { + data[lcv] = psAlloc(sizeof(psS32)); + *data[lcv] = lcv; + psListAdd(list,PS_LIST_TAIL,data[lcv]); + if (psMemGetRefCounter(data[lcv]) != 2) { + psError(PS_ERR_UNKNOWN, true,"Reference counter for data was not incremented"); + return 1; + } + } + + /* + Verify items are within the list. + (not needed, as psListAdd is tested elsewhere, but check anyway.) + */ + if (list->n != 15) { + psError(PS_ERR_UNKNOWN, true,"List wasn't populated as expected?"); + return 2; + } + + /* + Call psDlistFree with NULL specified as the elemFree function. + */ + + psFree(list); + + /* + Verify the list is deallocated but not the data items. + (accomplished by checking for memory leaks) + + Verify the data item's reference counters are decremented by one compared to when added to the list. + (technically, this could be accomplished by checking memory leaks too, but I checked anyway) + */ + + for (psS32 i=0;i<15;i++) { + if (psMemGetRefCounter(data[i]) != 1) { + psError(PS_ERR_UNKNOWN, true,"pslistFree didn't decrement the data item's reference counter"); + return 3; + } + psFree(data[i]); + } + + return 0; +} + +psS32 testListSort(void) +{ + psList* list; + psListIterator* iter; + float* fValue; + psU32* uValue; + + list = psListAlloc(NULL); + + for (psS32 lcv=0;lcv<15;lcv++) { + float* data = psAlloc(sizeof(psS32)); + if (lcv < 7) { + *data = 13-lcv*2; + } else { + *data = lcv*2-12; + } + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + + } + + printf("original list = ["); + iter = psListIteratorAlloc(list,PS_LIST_HEAD,true); + while( (fValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %.1f",*fValue); + } + printf(" ]\n"); + + list = psListSort(list,psCompareF32Ptr); + + printf("sorted list = ["); + psListIteratorSet(iter,PS_LIST_HEAD); + while( (fValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %.1f",*fValue); + } + printf(" ]\n"); + + psListIteratorSet(iter,PS_LIST_HEAD); + float* prevFValue = psListGetAndIncrement(iter); + while( (fValue=psListGetAndIncrement(iter)) != NULL ) { + if (*prevFValue > *fValue) { + psError(PS_ERR_UNKNOWN, true,"Hey, the list wasn't sorted!?"); + return 1; + } + } + + list = psListSort(list,psCompareDescendingF32Ptr); + + printf("descending sort list = ["); + psListIteratorSet(iter,PS_LIST_HEAD); + while( (fValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %.1f",*fValue); + } + printf(" ]\n"); + + psListIteratorSet(iter,PS_LIST_HEAD); + prevFValue = psListGetAndIncrement(iter); + while( (fValue=psListGetAndIncrement(iter)) != NULL ) { + if (*prevFValue < *fValue) { + psError(PS_ERR_UNKNOWN, true,"Hey, the list wasn't sorted!?"); + return 2; + } + } + + psFree(list); + + /********** OK, now do the same thing with ints. *************/ + + list = psListAlloc(NULL); + + for (psS32 lcv=0;lcv<15;lcv++) { + psU32* data = psAlloc(sizeof(psS32)); + if (lcv < 7) { + *data = 13-lcv*2; + } else { + *data = lcv*2-12; + } + psListAdd(list,PS_LIST_TAIL,data); + psFree(data); + + } + + printf("original list = ["); + iter = psListIteratorAlloc(list,PS_LIST_HEAD,true); + while( (uValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %d",*uValue); + } + printf(" ]\n"); + + list = psListSort(list,psCompareU32Ptr); + + printf("sorted list = ["); + psListIteratorSet(iter,PS_LIST_HEAD); + while( (uValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %d",*uValue); + } + printf(" ]\n"); + + psListIteratorSet(iter,PS_LIST_HEAD); + psU32* prevUValue = psListGetAndIncrement(iter); + while( (uValue=psListGetAndIncrement(iter)) != NULL ) { + if (*prevUValue > *uValue) { + psError(PS_ERR_UNKNOWN, true,"Hey, the list wasn't sorted!?"); + return 3; + } + } + + list = psListSort(list,psCompareDescendingU32Ptr); + + printf("descending sort list = ["); + psListIteratorSet(iter,PS_LIST_HEAD); + while( (uValue=psListGetAndIncrement(iter)) != NULL ) { + printf(" %d",*uValue); + } + printf(" ]\n"); + + psListIteratorSet(iter,PS_LIST_HEAD); + prevUValue = psListGetAndIncrement(iter); + while( (uValue=psListGetAndIncrement(iter)) != NULL ) { + if (*prevUValue < *uValue) { + psError(PS_ERR_UNKNOWN, true,"Hey, the list wasn't sorted!?"); + return 4; + } + } + + psFree(list); + + return 0; +} + +psS32 testListLength( void ) +{ + psArray *temp = psArrayAlloc(5); + psList *list = psListAlloc(temp); + + if (psListLength(list) != 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psListLength failed to return the correct length of list.\n"); + return 1; + } + list->n = 5; + if (psListLength(list) != 5) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psListLength failed to return the correct length of list.\n"); + return 2; + } + list->n++; + if (psListLength(list) != 6) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psListLength failed to return the correct length of list.\n"); + return 3; + } + psFree(temp); + psFree(list); + + psList *emptyList = NULL; + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psListLength(emptyList) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psListLength failed to return -1 for a NULL input list.\n"); + return 4; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psListLength((psList*)vector) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psListLength failed to return -1 for an invalid input list.\n"); + return 5; + } + psFree(vector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psLookupTable_01.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psLookupTable_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psLookupTable_01.c (revision 12167) @@ -0,0 +1,855 @@ +/** @file tst_psLookupTable_01.c +* +* @brief Test driver for psLookupTable functions +* +* This test driver contains the following tests for psLookupTable functions: +* testLookupAlloc - test allocation and freeing of psLookupTable +* testLookupRead - test different files and types within files +* being read correctly and some failure cases +* testLookupTableInterpolate - test the interpolation function +* testLookupTableInterpolateAll - test interpolation of all row values +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-06-13 23:55:34 $ +* +* Copyright 2004-5 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include "pslib_strict.h" +#include "psTest.h" +#include + +static psS32 testLookupTableAlloc(void); +static psS32 testVectorsReadFromFile(void); +static psS32 testLookupTableImport(void); +static psS32 testLookupTableRead(void); +static psS32 testLookupTableInterpolate(void); +static psS32 testLookupTableInterpolateAll(void); + +const psF64 errorTol_psF64 = 1.0e-4; +const psF64 tableU8_validFrom = 0; +const psF64 tableU8_validTo = 3; +const psS32 tableU8_size = 4; +const char tableU8_format[] = "\%d \%d \%d \%ld \%d \%d \%d \%ld \%f \%lf"; +const char tableU8_filename[] = VERIFIED_DIR "/tableU8.dat"; +const psS32 tableU8_indexCol = 0; +const psS32 tableU8_index[] = + { + 0, 1, 2, 3 + }; +const psU16 tableU8_val1[] = + { + 2, 4, 6, 8 + }; +const psU32 tableU8_val2[] = + { + 4, 8, 12, 16 + }; +const psU64 tableU8_val3[] = + { + 8, 16, 24, 32 + }; +const psS8 tableU8_val4[] = + { + 0, -1, -2, -3 + }; +const psS16 tableU8_val5[] = + { + -2, -4, -6, -8 + }; +const psS32 tableU8_val6[] = + { + -4, -8, -12, -16 + }; +const psS64 tableU8_val7[] = + { + -8, -16, -24, -32 + }; +const psF32 tableU8_val8[] = + { + -0.5, 0.0, 0.5,0.75 + }; +const psF64 tableU8_val9[] = + { + -1.5,-1.0,-0.25,1.75 + }; + +const psF64 tableF32_validFrom = -10.05; +const psF64 tableF32_validTo = 3500.67; +const psS32 tableF32_size = 4; +const psS32 tableF32_cols = 9; +const char tableF32_filename[] = VERIFIED_DIR "/tableF32.dat"; +const char tableF32_format[] = "\%f \%d \%d \%ld \%d \%d \%d \%ld \%d \%lf"; +const char tableF32_indexCol = 0; +const psElemType tableF32_colType[] = + { + PS_TYPE_F32, PS_TYPE_S32, PS_TYPE_S32, PS_TYPE_S64, + PS_TYPE_S32, PS_TYPE_S32, PS_TYPE_S32, PS_TYPE_S64, + PS_TYPE_F64 + }; +const psF32 tableF32_index[] = + { + -10.05,1.009,23.45,3500.67 + }; +const psS32 tableF32_col1[] = + { + 2, 4, 6, 8 + }; +const psS32 tableF32_col2[] = + { + 4, 8, 12, 16 + }; +const psS64 tableF32_col3[] = + { + 8, 16, 24, 32 + }; +const psS32 tableF32_col4[] = + { + 0, -1, -2, -3 + }; +const psS32 tableF32_col5[] = + { + -2, -4, -6, -8 + }; +const psS32 tableF32_col6[] = + { + -4, -8, -12, -16 + }; +const psS64 tableF32_col7[] = + { + -8, -16, -24, -32 + }; +const psF64 tableF32_col8[] = + { + -1.5, -1.0, -0.25, 1.75 + }; + + +const psF64 table10_validFrom = 1; +const psF64 table10_validTo = 10; +const psS32 table10_size = 10; +const char table10_format[] = "\%d \%d \%d \%ld \%d \%d \%d \%ld \%f \%lf"; +const char table10_filename[] = VERIFIED_DIR "/table10.dat"; +const psS32 table10_indexCol = 0; +const psS32 table10_index[] = + { + 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 + }; +const psS32 table10_val1[] = + { + 4, 6, 8, 10, 12, 14, 16, 18, 20, 22 + }; +const psS32 table10_val2[] = + { + 8, 12, 16, 20, 24, 28, 32, 36, 40, 44 + }; +const psS64 table10_val3[] = + { + 16, 24, 32, 64, 128, 256, 512, 1024, 2048, 4096 + }; +const psS32 table10_val4[] = + { + -1, -2, -3, -4, -5, -6, -7, -8, -9, -10 + }; +const psS32 table10_val5[] = + { + -4, -6, -8, -10, -12, -14, -16, -18, -20, -22 + }; +const psS32 table10_val6[] = + { + -8, -12, -16, -20, -24, -28, -32, -36, -40, -44 + }; +const psS64 table10_val7[] = + { + -16, -24, -32, -64, -128, -256, -512,-1024,-2048,-4096 + }; +const psF32 table10_val8[] = + { + -2.25,-1.5,-0.75, 0.0, 0.75, 1.50, 2.25, 3.00, 3.75, 4.50 + }; +const psF64 table10_val9[] = + { + -2.67,0.66, 3.99,7.32,10.65,13.98,17.31,20.64,23.97,27.30 + }; +const psF64 interpolVal1[] = + { + 5.25, 12.5, 25, 160, -5.25, -12.5, -25, -160, 0.9375, 11.4825 + }; +const psF64 interpolVal2[] = + { + 5, 12, 24, 128, -5, -12, -24, -128, 0.75, 10.65 + }; +const psF64 interpolVal3[] = + { + 4, 8, 16, -1, -4, -8, -16, -2.25, -2.67 + }; + +testDescription tests[] = { + {testLookupTableAlloc,817,"psLookupTableAlloc",0,false}, + {testVectorsReadFromFile,999,"psVectorsReadFromFile",0,false}, + {testLookupTableImport,666,"psLookupTableImport",0,false}, + {testLookupTableRead,998,"psLookupTableRead",0,false}, + {testLookupTableInterpolate,997,"psLookupTableInterpolate",0,false}, + {testLookupTableInterpolateAll,996,"psLookupTableInterpolateAll",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if ( ! runTestSuite(stderr,"psLookupTable",tests,argc,argv)) { + return 1; + } + return 0; +} + +psS32 testLookupTableAlloc(void) +{ + psLookupTable* table1 = NULL; + + // Allocate lookup table with valid parameters + table1 = psLookupTableAlloc("tableF32.dat","\%f \%lf \%d \%ld",10); + if(table1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Null lookup table generated from valid parameters"); + return 1; + } + if(strcmp(table1->filename,"tableF32.dat") != 0) { + psError(PS_ERR_UNKNOWN,true,"File name not properly stored in psLookupTable structure."); + return 2; + } + if(strcmp(table1->format,"\%f \%lf \%d \%ld") != 0) { + psError(PS_ERR_UNKNOWN,true,"Format string not properly storeed in psLookupTable structure."); + return 3; + } + if(table1->indexCol != 10) { + psError(PS_ERR_UNKNOWN,true,"Member indexCol not set properly"); + return 3; + } + psFree(table1); + + // Allocate lookup table with invalid filename + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid file name"); + table1 = psLookupTableAlloc(NULL,"\%d",3); + if(table1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Null file name accepted by psLookupTableAlloc"); + return 4; + } + + // Allocate lookup table with invalid format + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid format string"); + table1 = psLookupTableAlloc("tableF32.dat",NULL,3); + if(table1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Null format string accepted by psLookupTableAlloc"); + return 5; + } + + return 0; +} + +psS32 testVectorsReadFromFile(void) +{ + psArray* out = NULL; + psVector* tempVector = NULL; + + // Read file and place into an array of vectors + out = psVectorsReadFromFile(VERIFIED_DIR "/tableF32.dat","\%f \%d \%d \%ld \%d \%d \%d \%ld \%*d \%lf"); + if(out == NULL) { + psError(PS_ERR_UNKNOWN,true,"Unable to read file into array of vectors"); + return 1; + } + // Verify the number of vectors in array is as expected + if(out->n != tableF32_cols) { + psError(PS_ERR_UNKNOWN,true,"Expected number of columns = %d not equal to actual = %d", + tableF32_cols, out->n); + return 2; + } + // Verify the number of entries in vectors is as expected + for(int i = 0; i < out->n; i++ ) { + tempVector = out->data[i]; + if(tempVector->n != tableF32_size) { + psError(PS_ERR_UNKNOWN,true,"Col #%d Expected number of entries = %d not equal to actual = %d", + i,tableF32_size,tempVector->n); + return 3; + } + } + // Verify the vector types are as expected + for(int i = 0; i < out->n; i++) { + tempVector = out->data[i]; + if(tempVector->type.type != tableF32_colType[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #%d Expected type = %d not equal to actual = %d", + i,tableF32_colType[i],tempVector->type.type); + return 4; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[0]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.F32[i] != tableF32_index[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #0 Vector element[%d] expected = %f not equal to actual = %f", + i, tableF32_index[i],tempVector->data.F32[i]); + return 5 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[1]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col1[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #1 Vector element[%d] expected = %d not equal to actual = %d", + i, tableF32_col1[i],tempVector->data.S32[i]); + return 10 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[2]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col2[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #2 Vector element[%d] expected = %d not equal to actual = %d", + i, tableF32_col2[i],tempVector->data.S32[i]); + return 15 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[3]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S64[i] != tableF32_col3[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #3 Vector element[%d] expected = %ld not equal to actual = %ld", + i, tableF32_col3[i],tempVector->data.S64[i]); + return 20 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[4]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col4[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #4 Vector element[%d] expected = %d not equal to actual = %d", + i, tableF32_col4[i],tempVector->data.S32[i]); + return 25 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[5]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col5[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #5 Vector element[%d] expected = %d not equal to actual = %d", + i, tableF32_col5[i],tempVector->data.S32[i]); + return 30 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[6]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col6[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #6 Vector element[%d] expected = %d not equal to actual = %d", + i, tableF32_col6[i],tempVector->data.S32[i]); + return 35 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[7]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.S64[i] != tableF32_col7[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #7 Vector element[%d] expected = %ld not equal to actual = %ld", + i, tableF32_col7[i],tempVector->data.S64[i]); + return 40 + i; + } + } + // Verify the values in the vectors are as expected + tempVector = out->data[8]; + for(int i = 0; i < tempVector->n; i++) { + if(tempVector->data.F64[i] != tableF32_col8[i]) { + psError(PS_ERR_UNKNOWN,true,"Col #8 Vector element[%d] expected = %lf not equal to actual = %lf", + i, tableF32_col8[i],tempVector->data.F64[i]); + return 45 + i; + } + } + psFree(out); + + // Attempt to read vectors from valid file with invalid format + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL format"); + out = psVectorsReadFromFile(VERIFIED_DIR "/tableF32.dat",NULL); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL format string"); + return 50; + } + + // Attempt to read vectors from invalid file with valid format + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL filename"); + out = psVectorsReadFromFile(NULL,"%f %f"); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL file name"); + return 51; + } + + // Attempt to read vectors from valid file with invalid format specifiers + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid format specifier"); + out = psVectorsReadFromFile(VERIFIED_DIR "/tableF32.data","\%f \%c \%d"); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with invalid format specifier"); + return 52; + } + + // Attempt to read vectors from non-existant file + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for non-existant file"); + out = psVectorsReadFromFile("nonexistant.dat","\%f \%d \%d"); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with non-existant file"); + return 53; + } + + // Attempt to read vectors from file with errors in the numbers + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for error is file"); + out = psVectorsReadFromFile(VERIFIED_DIR "/tableF32_err.dat","\%f \%d \%d \%ld \%d \%d \%d \%ld \%d \%lf"); + if(out != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with file with errors"); + return 54; + } + + return 0; +} + +psS32 testLookupTableImport(void) +{ + psLookupTable* outTable = NULL; + psLookupTable* inTable = NULL; + psArray* vectors = NULL; + + // Attempt to import table with NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL table argument"); + outTable = psLookupTableImport(NULL,vectors,1); + if(outTable != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL input table"); + return 1; + } + + // Allocate valid table, format string and index column + inTable = psLookupTableAlloc(table10_filename,table10_format,table10_indexCol); + + // Attempt to import table with NULL vector argument + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for NULL vectors"); + outTable = psLookupTableImport(inTable,vectors,table10_indexCol); + if(outTable != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with NULL input vectors"); + return 2; + } + + // Allocate valid array + vectors = psArrayAlloc(10); + + // Attempt to import table with invalid index column + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid index column"); + outTable = psLookupTableImport(inTable,vectors,-1); + if(outTable != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL with invalid index column specified"); + return 3; + } + psFree(vectors); + + // Attempt to import file with file with unsorted index vector + // Read vectors from file + vectors = psVectorsReadFromFile(table10_filename,table10_format); + outTable = psLookupTableImport(inTable,vectors,table10_indexCol); + if(outTable != inTable) { + psError(PS_ERR_UNKNOWN,true,"Did not set proper return value"); + return 4; + } + // Verify the index column vector + psVector* indexVector = outTable->index; + for(int i = 0; i < indexVector->n; i++) { + if(indexVector->data.S32[i] != table10_index[i]) { + psError(PS_ERR_UNKNOWN,true,"Index value[%d] = %d is not as expected %d", + i,indexVector->data.S32[i],table10_index[i]); + return i*4; + } + } + // Verify the value array vectors + psVector* valueVector = outTable->values->data[1]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S32[i] != table10_val1[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %d is not as expected %d", + i,valueVector->data.S32[i],table10_val1[i]); + return i*5; + } + } + valueVector = outTable->values->data[2]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S32[i] != table10_val2[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %d is not as expected %d", + i,valueVector->data.S32[i],table10_val2[i]); + return i*6; + } + } + valueVector = outTable->values->data[3]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S64[i] != table10_val3[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %ld is not as expected %ld", + i,valueVector->data.S64[i],table10_val3[i]); + return i*7; + } + } + valueVector = outTable->values->data[4]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S32[i] != table10_val4[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %d is not as expected %d", + i,valueVector->data.S32[i],table10_val4[i]); + return i*8; + } + } + valueVector = outTable->values->data[5]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S32[i] != table10_val5[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %d is not as expected %d", + i,valueVector->data.S32[i],table10_val5[i]); + return i*9; + } + } + valueVector = outTable->values->data[6]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S32[i] != table10_val6[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %d is not as expected %d", + i,valueVector->data.S32[i],table10_val6[i]); + return i*10; + } + } + valueVector = outTable->values->data[7]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.S64[i] != table10_val7[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %ld is not as expected %ld", + i,valueVector->data.S64[i],table10_val7[i]); + return i*11; + } + } + valueVector = outTable->values->data[8]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.F32[i] != table10_val8[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %f is not as expected %f", + i,valueVector->data.F32[i],table10_val8[i]); + return i*12; + } + } + valueVector = outTable->values->data[9]; + for(int i = 0; i < valueVector->n; i++) { + if(valueVector->data.F64[i] != table10_val9[i]) { + psError(PS_ERR_UNKNOWN,true,"Value [%d] = %lf is not as expected %lf", + i,valueVector->data.F64[i],table10_val9[i]); + return i*13; + } + } + // Verify the table members are set properly + if(outTable->indexCol != table10_indexCol) { + psError(PS_ERR_UNKNOWN,true,"Member indexCol = %d not as expected %d", + outTable->indexCol,table10_indexCol); + return 100; + } + if(outTable->validFrom != table10_validFrom) { + psError(PS_ERR_UNKNOWN,true,"Member validFrom = %d not as expected %d", + outTable->validFrom, table10_validFrom); + return 101; + } + if(outTable->validTo != table10_validTo) { + psError(PS_ERR_UNKNOWN,true,"Member validTo = %d not as expected %d", + outTable->validTo, table10_validTo); + return 102; + } + if(strcmp(outTable->filename,table10_filename) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member filename = %d not as expected %s", + outTable->filename,table10_filename); + return 103; + } + if(strcmp(outTable->format,table10_format) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member format = %d not as expected %s", + outTable->format,table10_format); + return 104; + } + psFree(vectors); + psFree(inTable); + + // Attempt to import file with file with sorted index vector + // Read vectors from file + // Allocate valid table, format string and index column + inTable = psLookupTableAlloc(tableU8_filename,tableU8_format,tableU8_indexCol); + vectors = psVectorsReadFromFile(tableU8_filename,tableU8_format); + outTable = psLookupTableImport(inTable,vectors,tableU8_indexCol); + if(outTable != inTable) { + psError(PS_ERR_UNKNOWN,true,"Did not set proper return value"); + return 4; + } + // Verify the index column vector + indexVector = outTable->index; + for(int i = 0; i < indexVector->n; i++) { + if(indexVector->data.S32[i] != tableU8_index[i]) { + psError(PS_ERR_UNKNOWN,true,"Index value[%d] = %d is not as expected %d", + i,indexVector->data.S32[i],tableU8_index[i]); + } + } + // Verify the table members are set properly + if(outTable->indexCol != tableU8_indexCol) { + psError(PS_ERR_UNKNOWN,true,"Member indexCol = %d not as expected %d", + outTable->indexCol,tableU8_indexCol); + return 100; + } + if(outTable->validFrom != tableU8_validFrom) { + psError(PS_ERR_UNKNOWN,true,"Member validFrom = %d not as expected %d", + outTable->validFrom, tableU8_validFrom); + return 101; + } + if(outTable->validTo != tableU8_validTo) { + psError(PS_ERR_UNKNOWN,true,"Member validTo = %d not as expected %d", + outTable->validTo, tableU8_validTo); + return 102; + } + if(strcmp(outTable->filename,tableU8_filename) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member filename = %d not as expected %s", + outTable->filename,tableU8_filename); + return 103; + } + if(strcmp(outTable->format,tableU8_format) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member format = %d not as expected %s", + outTable->format,tableU8_format); + return 104; + } + psFree(inTable); + psFree(vectors); + + return 0; +} + +psS32 testLookupTableRead(void) +{ + psLookupTable* table1 = NULL; + long numRows = 0; + + // Attempt to read table with NULL input table specified + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + numRows = psLookupTableRead(table1); + if(numRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not return zero for NULL input table"); + return 1; + } + + // Set up valid table to read + table1 = psLookupTableAlloc(tableF32_filename,tableF32_format,tableF32_indexCol); + // Read table + numRows = psLookupTableRead(table1); + // Verify return value equals number of lines read + if(numRows != tableF32_size) { + psError(PS_ERR_UNKNOWN,true,"Return value %d not as expected %d", + numRows,tableF32_size); + return 1; + } + // Verify the members and values in table + if(fabs(table1->validFrom - tableF32_validFrom) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Member validFrom = %f not as expected %f", + table1->validFrom,tableF32_validFrom); + return 2; + } + if(fabs(table1->validTo - tableF32_validTo) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Member validTo = %f not as expected %f", + table1->validTo,tableF32_validTo); + return 3; + } + if(strcmp(table1->filename,tableF32_filename) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member filename %s not as expected %s", + table1->filename,tableF32_filename); + return 4; + } + if(strcmp(table1->format,tableF32_format) != 0) { + psError(PS_ERR_UNKNOWN,true,"Member format %s not as expected %s", + table1->format,tableF32_format); + return 5; + } + if(table1->indexCol != tableF32_indexCol) { + psError(PS_ERR_UNKNOWN,true,"Member indexCol %d not as expected %d", + table1->indexCol,tableF32_indexCol); + return 6; + } + for(psS32 i = 0; i < table1->index->n; i++) { + if(fabs(table1->index->data.F32[i]-tableF32_index[i]) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Index column[%d] = %f not as expected %f", + i,table1->index->data.F32[i],tableF32_index[i]); + return i*7; + } + } + psVector* tempVector = table1->values->data[1]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col1[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %d not as expected %d", + i,tempVector->data.S32[i],tableF32_col1[i]); + return i*8; + } + } + tempVector = table1->values->data[2]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col2[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %d not as expected %d", + i,tempVector->data.S32[i],tableF32_col2[i]); + return i*9; + } + } + tempVector = table1->values->data[3]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S64[i] != tableF32_col3[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %ld not as expected %ld", + i,tempVector->data.S64[i],tableF32_col3[i]); + return i*10; + } + } + tempVector = table1->values->data[4]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col4[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %d not as expected %d", + i,tempVector->data.S32[i],tableF32_col4[i]); + return i*11; + } + } + tempVector = table1->values->data[5]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col5[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %d not as expected %d", + i,tempVector->data.S32[i],tableF32_col5[i]); + return i*12; + } + } + tempVector = table1->values->data[6]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S32[i] != tableF32_col6[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %d not as expected %d", + i,tempVector->data.S32[i],tableF32_col6[i]); + return i*13; + } + } + tempVector = table1->values->data[7]; + for(psS32 i = 0; i < tempVector->n; i++) { + if(tempVector->data.S64[i] != tableF32_col7[i]) { + psError(PS_ERR_UNKNOWN,true,"Value column[%d] = %ld not as expected %ld", + i,tempVector->data.S64[i],tableF32_col7[i]); + return i*14; + } + } + psFree(table1); + + // Set up invalid table to read + table1 = psLookupTableAlloc(tableF32_filename,tableF32_format,tableF32_indexCol); + table1->indexCol = -1; + // Read invalid table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message invalid table indexCol"); + numRows = psLookupTableRead(table1); + // Verify the num of rows read is zero + if(numRows != 0) { + psError(PS_ERR_UNKNOWN,true,"Did not return 0 for line read for invalid table"); + return 15; + } + psFree(table1); + + return 0; +} + +psS32 testLookupTableInterpolate(void) +{ + psLookupTable* table1 = NULL; + psF64 out1 = 0.0; + + // Attempt to perform interpolation with NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message for invalid table"); + out1 = psLookupTableInterpolate(table1,0,0); + if( !isnan(out1) ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NaN as expected"); + return 1; + } + + // Interpolate values within the list and verify return values + table1 = psLookupTableAlloc(table10_filename,table10_format,table10_indexCol); + psS32 numLines = psLookupTableRead(table1); + if(numLines != table10_size) { + psError(PS_ERR_UNKNOWN,true,"Line read %d not as expected %d",numLines,table10_size); + return 2; + } + for(psS32 i = 0; i < table1->values->n; i++ ) { + out1 = psLookupTableInterpolate(table1, 5.25, i); + if( fabs(out1-interpolVal1[i]) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Did not return expected value. %lg expected %lg",out1,interpolVal1[i]); + return 3*i; + } + } + for(psS32 i = 0; i < table1->values->n; i++ ) { + out1 = psLookupTableInterpolate(table1, 5.0, i); + if( fabs(out1-interpolVal2[i]) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Did not return expected value. %lg expected %lg",out1,interpolVal2[i]); + return 4*i; + } + } + + // Interpolate value just below the lowest index value + out1 = psLookupTableInterpolate(table1,0,0); + if ( fabs(out1- NAN) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN returned %lf",out1); + return 5; + } + + // Interpolate value just above the highest index value + out1 = psLookupTableInterpolate(table1,11,0); + if ( fabs(out1-NAN) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN returned %lf",out1); + return 7; + } + + // Interpolate value with a column number greater than the table has + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error out of range."); + out1 = psLookupTableInterpolate(table1, 5, 100); + if ( fabs(out1-NAN) > FLT_EPSILON ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NAN returned %lf",out1); + return 9; + } + psFree(table1); + + return 0; +} + +psS32 testLookupTableInterpolateAll(void) +{ + psLookupTable* table1 = NULL; + psVector* interpValues; + + // Interpolate values with NULL table + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL table"); + interpValues = psLookupTableInterpolateAll(table1,5); + if(interpValues != NULL ) { + psError(PS_ERR_UNKNOWN,true,"Did not return NULL for NULL table"); + return 5; + } + + // Interpolate values within the list and verify return values + table1 = psLookupTableAlloc(table10_filename,table10_format,table10_indexCol); + psS32 numLines = psLookupTableRead(table1); + if(numLines != table10_size) { + psError(PS_ERR_UNKNOWN,true,"Num lines read %d not as expected %d",numLines,table10_size); + return 6; + } + interpValues = psLookupTableInterpolateAll(table1,5.25); + if(interpValues == NULL) { + psError(PS_ERR_UNKNOWN,true,"Returned vector is NULL."); + return 1; + } + for(psS32 i = 0; i < table1->values->n; i++ ) { + if( fabs(interpValues->data.F64[i]-interpolVal1[i]) > errorTol_psF64) { + psError(PS_ERR_UNKNOWN,true,"Did not return expected value. %lg expected %lg", + interpValues->data.F64[i],interpolVal1[i]); + return 2*i; + } + } + psFree(interpValues); + + // Interpolate values with index outside table + interpValues = psLookupTableInterpolateAll(table1,0); + if(interpValues != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did return NULL"); + return 4; + } + psFree(table1); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psMetadataIO.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadataIO.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadataIO.c (revision 12167) @@ -0,0 +1,1021 @@ +/** @file tst_psMetadataIO.c + * + * @brief Test driver for psMetadataIO functions + * + * This test driver contains the following tests for psMetadata: + * Read config file with overwrite set true + * Read config file with overwrite set false + * Attempt to use null fileName argument + * Attempt to open nonexistant file + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * @author Eric Van Alst, MHPCC + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-06-07 01:39:17 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testMetadataParseConfig(void); +static psS32 testMetadataParseConfig1(void); +static psS32 testMetadataParseConfig2(void); +static psS32 testMetadataParseConfig3(void); +static psS32 testMetadataParseConfig4(void); + +testDescription tests[] = { + {testMetadataParseConfig,0,"psMetadataConfigParse",0,false}, + {testMetadataParseConfig1,1,"psMetadataConfigParse1",0,false}, + {testMetadataParseConfig2,2,"psMetadataConfigParse2",0,false}, + {testMetadataParseConfig3,3,"psMetadataConfigParse3",0,false}, + {testMetadataParseConfig4,4,"psMetadataConfigParse4",0,false}, + {NULL} + }; + +static void writeMetadataItem(psMetadataItem* metadataIem, char* indentStr); +static void writeMetadata(psMetadata* metadata, char* indentStr); +static void writeMetadataList(psList *metadataItemList, char* indentStr); + +static psBool checkFailedLines(psS32 failedLines, psS32 expectedFailedLines, char* configFile); +static psBool checkNumberOfItems(psMetadata* md, psS32 expectedItems, char* configFile); +static psBool checkItemName(psMetadataItem* mdItem, char* expectedName, char* configFile); +static psBool checkItemType(psMetadataItem* mdItem, psS32 expectedType, char* configFile); +static psBool checkItemComment(psMetadataItem* mdItem, char* expectedComment, char* configFile); + +#define ERROR_TOL 0.0001 + +const char testConfig5[] = "test5.config"; +const psS32 testConfig5Fails = 7; + +const char testConfig4[] = "test4.config"; +const psS32 testConfig4Fails = 0; + +const char testConfig3[] = "test3.config"; +const psS32 testConfig3Fails = 1; + +const char testConfig2[] = "test2.config"; +const psS32 testConfig2Fails = 17; + +// SDR-14 test config file #1 +const char testConfig1[] = "test1.config"; +const psS32 testConfig1FailsOverwrite = 0; +const psS32 testConfig1Fails = 1; +const psS32 testConfig1Items = 25; +const char* testConfig1KeyOverwrite[] = + { + "Double","String","boolean","primes","comment", + "comment","comment","comment","comment","Float", + "boolean1","negprimes","vector1","vector2","vector3", + "vector4","vector5","vector6","vector7","vector8", + "CELL.00", "CELL.01","MYCELL","MYCELL","cell" + }; +const char* testConfig1CommentOverwrite[] = + { + "This is a comment","comment","The value of 'boolean' is 'true'","These are prime numbers", + "","","","","", + "This generates a warning, and, if 'overwrite' is 'false', is ignored","The value of 'boolean' is 'false'", + "","","","","", + "","","","", + "","","","A number","" + }; +const psDataType testConfig1TypeOverwrite[] = + { + PS_DATA_F64, PS_DATA_STRING, PS_DATA_BOOL, PS_DATA_VECTOR, PS_DATA_STRING, + PS_DATA_STRING, PS_DATA_STRING, PS_DATA_STRING, PS_DATA_STRING, PS_DATA_F64, + PS_DATA_BOOL, PS_DATA_VECTOR, PS_DATA_VECTOR, PS_DATA_VECTOR, PS_DATA_VECTOR, + PS_DATA_VECTOR, PS_DATA_VECTOR, PS_DATA_VECTOR, PS_DATA_VECTOR, PS_DATA_VECTOR, + PS_DATA_METADATA, PS_DATA_METADATA, PS_DATA_METADATA, PS_DATA_S32, PS_DATA_METADATA + }; +const psS32 testConfig1ValueS32Overwrite[] = + { + 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, + 0, 0, 0, 123, 0 + }; +const psF32 testConfig1ValueF32Overwrite[] = + { + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0 + }; +const psF64 testConfig1ValueF64Overwrite[] = + { + 1.23456789, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 1.23456, + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 0.0, 0.0, 0.0 + }; +const psBool testConfig1ValueBoolOverwrite[] = + { + false, false, true, false, false, + false, false, false, false, false, + false, false, false, false, false, + false, false, false, false, false, + false, false, false, false, false + }; +const char* testConfig1ValueStrOverwrite[] = + { + "", "This is the string that forms the value","","","This", + "is","a","non-unique","key","", + "","","","","", + "","","","","", + "","","","","" + }; +const psS32 testConfig1ValueVecItemsU8 = 7; +const psElemType testConfig1ValueVecTypeU8 = PS_TYPE_U8; +const psU8 testConfig1ValueVecValueU8[] = + { + 2, 3, 5, 7, 11, 13, 17 + }; +const psS32 testConfig1ValueVecItemsS8 = 8; +const psElemType testConfig1ValueVecTypeS8 = PS_TYPE_S8; +const psS8 testConfig1ValueVecValueS8[] = + { + -2, -3, -5, -7, -11, -13, -17, -19 + }; +const psS32 testConfig1ValueVecItemsU16 = 5; +const psElemType testConfig1ValueVecTypeU16 = PS_TYPE_U16; +const psU16 testConfig1ValueVecValueU16[] = + { + 0, 1, 2, 4, 8 + }; +const psS32 testConfig1ValueVecItemsU32 = 6; +const psElemType testConfig1ValueVecTypeU32 = PS_TYPE_U32; +const psU32 testConfig1ValueVecValueU32[] = + { + 0, 8, 16, 32, 64, 128 + }; +const psS32 testConfig1ValueVecItemsU64 = 3; +const psElemType testConfig1ValueVecTypeU64 = PS_TYPE_U64; +const psU64 testConfig1ValueVecValueU64[] = + { + 0, 64, 256 + }; +const psS32 testConfig1ValueVecItemsS16 = 5; +const psElemType testConfig1ValueVecTypeS16 = PS_TYPE_S16; +const psS16 testConfig1ValueVecValueS16[] = + { + -2, -1, 0, 1, 2 + }; +const psS32 testConfig1ValueVecItemsS32 = 6; +const psElemType testConfig1ValueVecTypeS32 = PS_TYPE_S32; +const psS32 testConfig1ValueVecValueS32[] = + { + -4, -2, 0, 2, 4, 6 + }; +const psS32 testConfig1ValueVecItemsS64 = 7; +const psElemType testConfig1ValueVecTypeS64 = PS_TYPE_S64; +const psS64 testConfig1ValueVecValueS64[] = + { + -16, -4, 0, 4, 16, 36, 64 + }; +const psS32 testConfig1ValueVecItemsF32 = 4; +const psElemType testConfig1ValueVecTypeF32 = PS_TYPE_F32; +const psF32 testConfig1ValueVecValueF32[] = + { + -1.03, 1.04, -1.05, 1.06 + }; +const psS32 testConfig1ValueVecItemsF64 = 5; +const psElemType testConfig1ValueVecTypeF64 = PS_TYPE_F64; +const psF64 testConfig1ValueVecValueF64[] = + { + -2.22, 2.21, -2.20, 2.19, -2.18 + }; +const psS32 testConfig1ValueMetaItems1 = 3; +const char* testConfig1ValueMetaNames1[] = + { + "EXTNAME","BIASSEC","CHIP" + }; +const psDataType testConfig1ValueMetaTypes1[] = + { + PS_DATA_STRING, PS_DATA_STRING, PS_DATA_STRING + }; +const char* testConfig1ValueMetaValue1[] = + { + "CCD00","BSEC-00","CHIP.00" + }; +const psS32 testConfig1ValueMetaItems2 = 3; +const char* testConfig1ValueMetaNames2[] = + { + "EXTNAME","BIASSEC","CHIP" + }; +const psDataType testConfig1ValueMetaTypes2[] = + { + PS_DATA_STRING, PS_DATA_STRING, PS_DATA_STRING + }; +const char* testConfig1ValueMetaValue2[] = + { + "CCD01","BSEC-01","CHIP.00" + }; +const psS32 testConfig1ValueMetaItems3 = 4; +const char* testConfig1ValueMetaNames3[] = + { + "EXTNAME","BIASSEC","CHIP","NCELL" + }; +const psDataType testConfig1ValueMetaTypes3[] = + { + PS_DATA_STRING, PS_DATA_STRING, PS_DATA_STRING, PS_DATA_S32 + }; +const char* testConfig1ValueMetaValueStr3[] = + { + "CCD00","BSEC-00","CHIP.00","" + }; +const psS32 testConfig1ValueMetaValueS323[] = + { + 0, 0, 0, 24 + }; + +static void writeMetadata(psMetadata* metadata, char* indentStr) +{ + writeMetadataList(metadata->list, indentStr); +} + +static void writeMetadataList(psList* metadataItemList, char* indentStr) +{ + psMetadataItem* entryChild = NULL; + psMetadataItem* searchChild = NULL; + psArray* nonUniqueKeyArray = NULL; + psBool keyFound = false; + char* tempKey = NULL; + + // Allocate iterator for moving through metadata list + psListIterator* iter = psListIteratorAlloc(metadataItemList, PS_LIST_HEAD, true); + psListIterator* searchIter = psListIteratorAlloc(metadataItemList, PS_LIST_HEAD, true); + + // Allocate array for nonUnique key names + nonUniqueKeyArray = psArrayAlloc(10); + nonUniqueKeyArray->n = 0; + + + // Loop through all items in the list + while ( (entryChild = psListGetAndIncrement(iter)) != NULL) { + // Search list for another entry with same key name + // Check if last entry + if(iter->index != metadataItemList->n) { + // Set search iterator to index + if(!psListIteratorSet(searchIter,iter->index) ) { + psError(PS_ERR_UNKNOWN,true,"Error searching list for multiple keys"); + break; + } + keyFound = false; + while ( (searchChild = psListGetAndIncrement(searchIter)) != NULL) { + if(strcmp(entryChild->name,searchChild->name) == 0) { + // Search nonUnique key array + for(psS32 i = 0; i < nonUniqueKeyArray->n; i++) { + if(strcmp(entryChild->name,nonUniqueKeyArray->data[i]) == 0) { + keyFound = true; + } + } + if(!keyFound) { + // Add key to non-unique array + tempKey = psStringCopy(entryChild->name); + nonUniqueKeyArray = psArrayAdd(nonUniqueKeyArray,1,tempKey); + psFree(tempKey); + + // Print MULTI line + printf("%-25s MULTI\n",entryChild->name); + + // Break out of loop + break; + } + } + } + } + writeMetadataItem(entryChild,indentStr); + } + + psFree(iter); + psFree(searchIter); + psFree(nonUniqueKeyArray); +} + +char* vectorToConfigString(psVector* vector) +{ + psS32 maxLength = 256; + + char* str = psAlloc(sizeof(char)*maxLength+1); + + if (vector == NULL) { + snprintf(str,maxLength, "NULL"); + return str; + } + + int size = vector->n; + + if (size == 0) { + snprintf(str,maxLength, " "); + return str; + } + + char* tempStr = psAlloc(sizeof(char)*maxLength+1); + *str = '\0'; + bool full = false; + + #define APPEND_ELEMENTS_CASE(TYPE, NATIVE_TYPE, FORMAT) \ +case PS_TYPE_##TYPE: \ + strcat(str,#TYPE); \ + for(psS32 i = 0; i < (strlen(str)-6); i++) { \ + strcat(str," "); \ + } \ + for (lcv=0; lcv < size && ! full; lcv++) { \ + snprintf(tempStr, maxLength, "%s" FORMAT, prefix, (NATIVE_TYPE) (vector->data.TYPE[lcv])); \ + strncat(str,tempStr,maxLength); \ + full = (strlen(str) > maxLength-2); \ + prefix = ","; \ + } \ + break; + + int lcv; + char* prefix = " "; + switch(vector->type.type) { + APPEND_ELEMENTS_CASE(S8,char,"%hd") + APPEND_ELEMENTS_CASE(S16,short int,"%hd") + APPEND_ELEMENTS_CASE(S32,int,"%d") + APPEND_ELEMENTS_CASE(S64,long,"%ld") + APPEND_ELEMENTS_CASE(U8,unsigned char,"%hu") + APPEND_ELEMENTS_CASE(U16,unsigned short,"%hu") + APPEND_ELEMENTS_CASE(U32,unsigned int, "%u") + APPEND_ELEMENTS_CASE(U64,unsigned long,"%lu") + APPEND_ELEMENTS_CASE(F32,double,"%g") + APPEND_ELEMENTS_CASE(F64,double,"%g") + default: + snprintf(str,maxLength,"INVALID TYPE"); + break; + } + + psFree(tempStr); + + return str; +} + + +static void writeMetadataItem(psMetadataItem *metadataItem, char* indentStr) +{ + char* vecStr; + + switch(metadataItem->type) { + case PS_DATA_BOOL: + printf("%s%-25s BOOL %40d",indentStr,metadataItem->name,metadataItem->data.B); + break; + case PS_DATA_S32: + printf("%s%-25s S32 %40d",indentStr,metadataItem->name,metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("%s%-25s F32 %40f",indentStr,metadataItem->name,metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("%s%-25s F64 %40lf",indentStr,metadataItem->name,metadataItem->data.F64); + break; + case PS_DATA_VECTOR: + vecStr = (char*)vectorToConfigString((psVector*)metadataItem->data.V); + printf("%s@%-24s %s",indentStr,metadataItem->name,vecStr); + psFree(vecStr); + break; + case PS_DATA_STRING: + printf("%s%-25s STR %40s",indentStr,metadataItem->name,(char*)metadataItem->data.V); + break; + case PS_DATA_METADATA: + printf("%s%-25s METADATA\n",indentStr,metadataItem->name); + char nestedStr[256] = " "; + strcat(nestedStr,indentStr); + writeMetadata((psMetadata*)metadataItem->data.md,nestedStr); + printf("%sEND",indentStr); + break; + default: + printf("#%s%-24s BAD TYPE=%d",indentStr,metadataItem->name,metadataItem->type); + break; + } + if(strlen(metadataItem->comment) > 0) { + printf(" # %-20s\n",metadataItem->comment); + } else { + printf("\n"); + } +} + +static psBool checkFailedLines(psS32 failedLines, psS32 expectedFailedLines, char* configFile) +{ + psBool returnValue = true; + + // Verify the expected number of failed lines + if(failedLines != expectedFailedLines) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Number of failed lines = %d not as expected %d", + configFile,failedLines,expectedFailedLines); + returnValue = false; + } + return returnValue; +} + +static psBool checkNumberOfItems(psMetadata* md, psS32 expectedItems, char* configFile) +{ + psBool returnValue = true; + + // Verify the number of items in metadata + if(md->list->n != expectedItems) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Number of items = %d not as expected %d", + configFile,md->list->n, expectedItems); + returnValue = false; + } + return returnValue; +} + +static psBool checkItemName(psMetadataItem* mdItem, char* expectedName, char* configFile) +{ + psBool returnValue = true; + + // Compare key names + if(strcmp(mdItem->name,expectedName) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Key name %s not as expected %s", + configFile,mdItem->name,expectedName); + returnValue = false; + } + + return returnValue; +} + +static psBool checkItemType(psMetadataItem* mdItem, psS32 expectedType, char* configFile) +{ + psBool returnValue = true; + + // Compare types + if(mdItem->type != expectedType) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Type %d not as expected %d", + configFile,mdItem->type,expectedType); + returnValue = false; + } + return returnValue; +} + +static psBool checkItemComment(psMetadataItem* mdItem, char* expectedComment, char* configFile) +{ + psBool returnValue = true; + + // Compare comments + if(strcmp(mdItem->comment,expectedComment) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Comment %s not as expected %s", + configFile,mdItem->comment,expectedComment); + returnValue = false; + } + return returnValue; +} + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if( !runTestSuite(stderr,"psMetadataConfigParse",tests,argc,argv)) { + return 1; + } + + return 0; +} + +psS32 testMetadataParseConfig(void) +{ + psMetadata* metadata1 = NULL; + psMetadataItem* entryChild = NULL; + psU32 failedLines = 0; + psListIterator* iter = NULL; + psListIterator* mdIter = NULL; + psMetadataItem* mdChild = NULL; + psS32 metaCounter = 0; + psS32 mdCounter = 0; + + // Read config file test1.config with overwrite set true + metadata1 = psMetadataConfigParse(metadata1,&failedLines,testConfig1,true); + // Verify the expected number of failed lines + if(!checkFailedLines(failedLines,testConfig1FailsOverwrite,(char*)testConfig1)) { + return 1; + } + // Verify the number of items in metadata + if(!checkNumberOfItems(metadata1,testConfig1Items,(char*)testConfig1)) { + return 2; + } + // Verify metadata item quads + iter = psListIteratorAlloc(metadata1->list, PS_LIST_HEAD, true); + for(psS32 i = 0; i < testConfig1Items; i++) { + // Get list item + entryChild = psListGetAndIncrement(iter); + + // Verify end of list not reached prematurely + if(entryChild == NULL) { + psError(PS_ERR_UNKNOWN,true,"End of list encountered at %d not as expected %d", + i,testConfig1Items); + return i*10+1; + } + // Verify name + if(!checkItemName(entryChild,(char*)testConfig1KeyOverwrite[i],(char*)testConfig1)) { + return i*10+2; + } + // Verify type + if(!checkItemType(entryChild,testConfig1TypeOverwrite[i],(char*)testConfig1)) { + return i*10+3; + } + // Verify comment + if(!checkItemComment(entryChild,(char*)testConfig1CommentOverwrite[i],(char*)testConfig1)) { + return i*10+4; + } + // Compare values + switch(entryChild->type) { + case PS_DATA_S32: + if(entryChild->data.S32 != testConfig1ValueS32Overwrite[i]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Value %d not as expected %d", + testConfig1,entryChild->data.S32, testConfig1ValueS32Overwrite[i]); + return i*10+5; + } + break; + case PS_DATA_F32: + if(fabs(entryChild->data.F32 - testConfig1ValueF32Overwrite[i]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Value %f not as expected %f", + testConfig1,entryChild->data.F32, testConfig1ValueF32Overwrite[i]); + return i*10+5; + } + break; + case PS_DATA_F64: + if(fabs(entryChild->data.F64 - testConfig1ValueF64Overwrite[i]) > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Value %lf not as expected %lf", + testConfig1,entryChild->data.F64, testConfig1ValueF64Overwrite[i]); + return i*10+5; + } + break; + case PS_DATA_BOOL: + if(entryChild->data.B != testConfig1ValueBoolOverwrite[i]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Value %d not as expected %d", + testConfig1,entryChild->data.B,testConfig1ValueBoolOverwrite[i]); + return i*10+5; + } + break; + case PS_DATA_STRING: + if(strcmp(entryChild->data.V,testConfig1ValueStrOverwrite[i]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Value %s not as expected %s", + testConfig1,entryChild->data.V,testConfig1ValueStrOverwrite[i]); + return i*10+5; + } + break; + case PS_DATA_VECTOR: + // Verify the correct number of entries + switch(((psVector*)(entryChild->data.V))->type.type) { + case PS_TYPE_U8: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsU8) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsU8); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeU8) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeU8); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsU8; j++) { + if(((psVector*)entryChild->data.V)->data.U8[j] != testConfig1ValueVecValueU8[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.U8[j], + testConfig1ValueVecValueU8[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_U16: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsU16) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsU16); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeU16) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeU16); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsU16; j++) { + if(((psVector*)entryChild->data.V)->data.U16[j] != testConfig1ValueVecValueU16[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.U16[j], + testConfig1ValueVecValueU16[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_U32: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsU32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsU32); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeU32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeU32); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsU32; j++) { + if(((psVector*)entryChild->data.V)->data.U32[j] != testConfig1ValueVecValueU32[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.U32[j], + testConfig1ValueVecValueU32[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_U64: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsU64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsU64); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeU64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeU64); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsU64; j++) { + if(((psVector*)entryChild->data.V)->data.U64[j] != testConfig1ValueVecValueU64[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %ld not as expected %ld", + testConfig1,j,((psVector*)entryChild->data.V)->data.U64[j], + testConfig1ValueVecValueU64[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_S8: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsS8) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsS8); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeS8) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeS8); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsS8; j++) { + if(((psVector*)entryChild->data.V)->data.S8[j] != testConfig1ValueVecValueS8[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.S8[j], + testConfig1ValueVecValueS8[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_S16: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsS16) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsS16); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeS16) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeS16); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsS16; j++) { + if(((psVector*)entryChild->data.V)->data.S16[j] != testConfig1ValueVecValueS16[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.S16[j], + testConfig1ValueVecValueS16[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_S32: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsS32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsS32); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeS32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeS32); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsS32; j++) { + if(((psVector*)entryChild->data.V)->data.S32[j] != testConfig1ValueVecValueS32[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %d not as expected %d", + testConfig1,j,((psVector*)entryChild->data.V)->data.S32[j], + testConfig1ValueVecValueS32[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_S64: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsS64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsS64); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeS64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeS64); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsS64; j++) { + if(((psVector*)entryChild->data.V)->data.S64[j] != testConfig1ValueVecValueS64[j]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %ld not as expected %ld", + testConfig1,j,((psVector*)entryChild->data.V)->data.S64[j], + testConfig1ValueVecValueS64[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_F32: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsF32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsF32); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeF32) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeF32); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsF32; j++) { + if(fabs(((psVector*)entryChild->data.V)->data.F32[j]-testConfig1ValueVecValueF32[j]) + > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %f not as expected %f", + testConfig1,j,((psVector*)entryChild->data.V)->data.F32[j], + testConfig1ValueVecValueF32[j]); + return i*10+5*j; + } + } + break; + case PS_TYPE_F64: + if(((psVector*)(entryChild->data.V))->n != testConfig1ValueVecItemsF64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector entries %d not as expected %d", + testConfig1,((psVector*)(entryChild->data.V))->n,testConfig1ValueVecItemsF64); + return i*10+5; + } + // Verify the correct type + if(((psVector*)(entryChild->data.V))->type.type != testConfig1ValueVecTypeF64) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector type %d not as expected %s", + testConfig1,((psVector*)entryChild->data.V)->type.type,testConfig1ValueVecTypeF64); + return i*10+5; + } + // Verify the values in vector + for(psS32 j = 0; j < testConfig1ValueVecItemsF64; j++) { + if(fabs(((psVector*)entryChild->data.V)->data.F64[j]-testConfig1ValueVecValueF64[j]) + > ERROR_TOL) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Vector data[%d] = %lf not as expected %lf", + testConfig1,j,((psVector*)entryChild->data.V)->data.F64[j], + testConfig1ValueVecValueF64[j]); + return i*10+5*j; + } + } + break; + default: + break; + } + break; + case PS_DATA_METADATA: + if(metaCounter == 0) { + // Check if number of items is as expected + if(entryChild->data.md->list->n != testConfig1ValueMetaItems1) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 1 items %d not as expected %d", + testConfig1,entryChild->data.md->list->n,testConfig1ValueMetaItems1); + return i*10+6; + } + // Loop through metadata items + mdIter = psListIteratorAlloc(entryChild->data.md->list, PS_LIST_HEAD, true); + mdCounter = 0; + while ( (mdChild = psListGetAndIncrement(mdIter)) != NULL) { + if(strcmp(mdChild->name,testConfig1ValueMetaNames1[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 1 name[%d] %s not as expected %s", + testConfig1,mdCounter,mdChild->name,testConfig1ValueMetaNames1[mdCounter]); + return i*10+6*mdCounter; + } + if(mdChild->type != testConfig1ValueMetaTypes1[mdCounter]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 1 type[%d] %d not as expected %d", + testConfig1,mdCounter,mdChild->type,testConfig1ValueMetaTypes1[mdCounter]); + return i*10+6*mdCounter; + } + if(strcmp((char*)mdChild->data.V,testConfig1ValueMetaValue1[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 1 value[%d] %s not as expected %s", + testConfig1,mdCounter,(char*)mdChild->data.V,testConfig1ValueMetaValue1[mdCounter]); + return i*10+6*mdCounter; + } + mdCounter++; + } + psFree(mdIter); + } else if(metaCounter == 1) { + // Check if number of items is as expected + if(entryChild->data.md->list->n != testConfig1ValueMetaItems2) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 2 items %d not as expected %d", + testConfig1,entryChild->data.md->list->n,testConfig1ValueMetaItems2); + return i*10+6; + } + // Loop through metadata items + mdIter = psListIteratorAlloc(entryChild->data.md->list, PS_LIST_HEAD, true); + mdCounter = 0; + while ( (mdChild = psListGetAndIncrement(mdIter)) != NULL) { + if(strcmp(mdChild->name,testConfig1ValueMetaNames2[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 2 name[%d] %s not as expected %s", + testConfig1,mdCounter,mdChild->name,testConfig1ValueMetaNames2[mdCounter]); + return i*10+6*mdCounter; + } + if(mdChild->type != testConfig1ValueMetaTypes2[mdCounter]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 2 type[%d] %d not as expected %d", + testConfig1,mdCounter,mdChild->type,testConfig1ValueMetaTypes2[mdCounter]); + return i*10+6*mdCounter; + } + if(strcmp((char*)mdChild->data.V,testConfig1ValueMetaValue2[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 2 value[%d] %s not as expected %s", + testConfig1,mdCounter,(char*)mdChild->data.V,testConfig1ValueMetaValue2[mdCounter]); + return i*10+6*mdCounter; + } + mdCounter++; + } + psFree(mdIter); + } else if(metaCounter == 2) { + // Check if number of items is as expected + if(entryChild->data.md->list->n != testConfig1ValueMetaItems3) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 items %d not as expected %d", + testConfig1,entryChild->data.md->list->n,testConfig1ValueMetaItems3); + return i*10+6; + } + // Loop through metadata items + mdIter = psListIteratorAlloc(entryChild->data.md->list, PS_LIST_HEAD, true); + mdCounter = 0; + while ( (mdChild = psListGetAndIncrement(mdIter)) != NULL) { + if(strcmp(mdChild->name,testConfig1ValueMetaNames3[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 name[%d] %s not as expected %s", + testConfig1,mdCounter,mdChild->name,testConfig1ValueMetaNames3[mdCounter]); + return i*10+6*mdCounter; + } + if(mdChild->type != testConfig1ValueMetaTypes3[mdCounter]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 type[%d] %d not as expected %d", + testConfig1,mdCounter,mdChild->type,testConfig1ValueMetaTypes3[mdCounter]); + return i*10+6*mdCounter; + } + switch(mdChild->type) { + case PS_DATA_STRING: + if(strcmp((char*)mdChild->data.V,testConfig1ValueMetaValueStr3[mdCounter]) != 0) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 value[%d] %s not as expected %s", + testConfig1,mdCounter,(char*)mdChild->data.V, + testConfig1ValueMetaValueStr3[mdCounter]); + return i*10+6*mdCounter; + } + break; + case PS_DATA_S32: + if(mdChild->data.S32 != testConfig1ValueMetaValueS323[mdCounter]) { + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 value[%d] %d not as expected %d", + testConfig1,mdCounter,mdChild->data.S32, + testConfig1ValueMetaValueS323[mdCounter]); + return i*10+6*mdCounter; + } + break; + default: + psError(PS_ERR_UNKNOWN,true,"File: %s : Metadata 3 value[%d] unknown type", + testConfig1,mdCounter); + return i*10+6*mdCounter; + break; + } + mdCounter++; + } + psFree(mdIter); + } + metaCounter++; + break; + default: + psError(PS_ERR_UNKNOWN,true,"Unexpected type %d encountered",entryChild->type); + return i*10+5; + break; + } + } + + writeMetadata(metadata1,""); + + psFree(metadata1); + + return 0; +} + +psS32 testMetadataParseConfig1(void) +{ + psMetadata* metadata1 = NULL; + psU32 failedLines = 0; + + // Read config file test2.config with overwrite set true + // This file contains parse errors + psLogMsg(__func__,PS_LOG_INFO,"Following should generate parse error message"); + metadata1 = psMetadataConfigParse(metadata1,&failedLines,testConfig2,true); + // Verify the expected number of failed lines + if(!checkFailedLines(failedLines,testConfig2Fails,(char*)testConfig2)) { + return 1; + } + // Verify return value is null + if(metadata1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected a NULL return for failed parse"); + return 2; + } + psFree(metadata1); + + // Attempt parse a non-existant file + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + metadata1 = psMetadataConfigParse(metadata1,&failedLines,"ab.config",true); + if(metadata1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Expected a NULL return for non-existant file"); + return 3; + } + + // Attempt parse with NULL failed lines ptr + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL failed lines arg"); + metadata1 = psMetadataConfigParse(metadata1,NULL,testConfig2,true); + if(metadata1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect NULL return for NULL failed lines argument"); + return 4; + } + psFree(metadata1); + // Attempt parse with NULL file name + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL file name arg"); + metadata1 = psMetadataConfigParse(metadata1,&failedLines,NULL,true); + if(metadata1 != NULL) { + psError(PS_ERR_UNKNOWN,true,"Expected a NULL return for NULL filename argument"); + return 5; + } + + psFree(metadata1); + + return 0; +} + +psS32 testMetadataParseConfig2(void) +{ + psMetadata* metadata1 = NULL; + psU32 failedLines = 0; + + // Read config file test3.config with overwrite set false + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error of duplicate key names"); + metadata1 = psMetadataConfigParse(metadata1,&failedLines,testConfig3,false); + // Verify the expected number of failed lines + if(!checkFailedLines(failedLines,testConfig3Fails,(char*)testConfig3)) { + return 1; + } + if(metadata1 == NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expected a NULL return for failed due to overwrite false"); + return 2; + } + psFree(metadata1); + + return 0; +} + +psS32 testMetadataParseConfig3(void) +{ + psMetadata* metadata1 = NULL; + psU32 failedLines = 0; + + // Read config file test4.config with overwrite set false + metadata1 = psMetadataConfigParse(metadata1,&failedLines,testConfig4,false); + // Verify the expected number of failed lines + if(!checkFailedLines(failedLines,testConfig4Fails,(char*)testConfig4)) { + return 1; + } + // Print out metadata items for comparison against STDERR verified file + writeMetadata(metadata1,""); + + psFree(metadata1); + + return 0; +} + +psS32 testMetadataParseConfig4(void) +{ + psMetadata* metadata1 = NULL; + psU32 failedLines = 0; + + // Read config file test4.config with overwrite set false + metadata1 = psMetadataConfigParse(metadata1,&failedLines,testConfig5,true); + // Verify the expected number of failed lines + if(!checkFailedLines(failedLines,testConfig5Fails,(char*)testConfig5)) { + return 1; + } + psFree(metadata1); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_01.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_01.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_01.c (revision 12167) @@ -0,0 +1,299 @@ +/** @file tst_psMetadata_01.c +* +* @brief Test driver for psMetadata functions +* +* @author dRob, MHPCC +* +* @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-08-09 00:06:26 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static psS32 testMetadataItemCopy(void); +static psS32 testMetadataItemTransfer(void); +static psS32 testMetadataPrint(void); +static psS32 testMetadataItemCompare(void); +static psS32 testMetadataItemParse(void); + +testDescription tests[] = { + {testMetadataItemCopy, 666, "psMetadataItemCopy()", 0, false}, + {testMetadataItemTransfer, 1, "psMetadataItemTransfer()", 0, false}, + {testMetadataPrint,667,"psMetadataPrint",0,false}, + {testMetadataItemCompare,669,"psMetadataItemCompare",0,false}, + {testMetadataItemParse,665,"psMetadataItemParse",0,false}, + {NULL} + }; + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + return ( !runTestSuite(stderr,"psMetadata_01",tests,argc,argv) ); + +} + +psS32 testMetadataItemCopy(void) +{ + psMetadataItem *item = psMetadataItemAlloc("metaITEM", PS_DATA_S32, "no Comment"); + item->data.S32 = 666; + psMetadataItem *item2 = NULL; + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + item2 = psMetadataItemCopy(NULL); + if (item2 != NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataItemCopy failed to return NULL for NULL input psMetadataItem.\n"); + return 1; + } + + //Simple copy of psS32 data + item2 = psMetadataItemCopy(item); + if (item2 == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataItemCopy incorrectly returned NULL for valid input psMetadataItem.\n"); + return 2; + } + if ( strncmp(item2->name, item->name, 10) || item2->type != item->type || + item2->data.S32 != item->data.S32 || strncmp(item2->comment, item->comment, 15) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataItemCopy returned an incorrect psMetadataItem (S32 test).\n"); + return 3; + } + psFree(item2); + psFree(item); + item2 = NULL; + + //Copy of MetadataItem containing a psMetadata + psMetadata* metadata = psMetadataAlloc(); + psMetadataAddS32(metadata, PS_LIST_TAIL, "item01", 0, "", 55); + psMetadataAddF32(metadata, PS_LIST_TAIL, "item02", 0, NULL, 3.14); + item = psMetadataItemAlloc("metaItem2", PS_DATA_METADATA, "newMeta", metadata); + item2 = psMetadataItemCopy(item); + if (item2 == NULL || item2->data.md == NULL) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataItemCopy returned either a NULL item or NULL metadata data\n"); + return 4; + } + if ( strncmp(item2->name, item->name, 11) || item2->type != item->type || + strncmp(item2->comment, item->comment, 15) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataItemCopy returned an incorrect psMetadataItem (Metadata test).\n"); + return 5; + } + psMetadataItem *temp1 = psMetadataGet(item->data.md, PS_LIST_HEAD); + psMetadataItem *temp2 = psMetadataGet(item2->data.md, PS_LIST_HEAD); + if ( strncmp(temp2->name, temp1->name, 10) || temp2->type != temp1->type || + temp2->data.S32 != temp1->data.S32 || strncmp(temp2->comment, temp1->comment, 15) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataItemCopy incorrectly returned non-matching metadata data.\n"); + return 6; + } + + psFree(item2); + psFree(metadata); + psFree(item); + return 0; +} + +psS32 testMetadataItemTransfer(void) +{ + + psMetadata *md = psMetadataAlloc(); + psMetadata *out = NULL; + psMetadataAddS32(md, PS_LIST_TAIL, "metaITEM", 0, "no Comment", 666); + + //attempt transfer to NULL 'out' metadata. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psMetadataItemTransfer(out, md, "metaITEM") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed to return false for NULL 'out' metadata.\n"); + return 1; + } + out = psMetadataAlloc(); + //attempt to transfer using a NULL key. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psMetadataItemTransfer(out, md, NULL) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed to return false for NULL key input.\n"); + return 2; + } + //attempt transfer to NULL 'in' metadata. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( psMetadataItemTransfer(out, NULL, "metaITEM") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed to return false for NULL 'in' metadata.\n"); + return 3; + } + //attempt to transfer using an allocated metadata and invalid key + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psMetadataItemTransfer(out, md, "metaITEM2") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed to return false for invalid 'key'.\n"); + return 4; + } + //attempt to transfer with all valid inputs. + psMetadataItem *item = NULL; + if ( !psMetadataItemTransfer(out, md, "metaITEM") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed with valid inputs.\n"); + return 7; + } + item = psMetadataGet(out, PS_LIST_HEAD); + if (item->data.S32 != 666 || strncmp(item->comment, "no Comment", 20)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "psMetadataItemTransfer failed to correctly transfer item data.\n"); + return 8; + } + + psFree(out); + psFree(md); + + return 0; +} + +static psMetadata *setupMeta2(void) +{ + psMetadata *md = NULL; + psVector *vec = NULL; + psMetadata *newMD = NULL; + psTime *time; + int i = 0; + md = psMetadataAlloc(); + newMD = psMetadataAlloc(); + vec = psVectorAlloc(60, PS_DATA_S32); + time = psTimeAlloc(PS_TIME_TAI); + for (i = 0; i < 5; i++) { + vec->data.S32[i] = i+1; + } + vec->n = 5; + time->sec = 1000; + time->nsec = 25; + time->leapsecond = true; + psMetadataAddBool(md, PS_LIST_TAIL, "item1", 0, "I am a boolean", true); + psMetadataAddS32(md, PS_LIST_TAIL, "item2", 0, "I am a integer", 55); + psMetadataAddF32(md, PS_LIST_TAIL, "item3", 0, NULL, 3.14); + psMetadataAddF64(md, PS_LIST_TAIL, "item4", 0, "", 6.28); + psMetadataAddStr(md, PS_LIST_TAIL, "item5", 0, "I am a string", "GNIRTS"); + psMetadataAddVector(md, PS_LIST_TAIL, "vector6", 0, "I am a vector", vec); + psMetadataAddTime(md, PS_LIST_TAIL, "time01", 0, "I am time", time); + psMetadataAddS8(md, PS_LIST_TAIL, "item6", 0, "I am S8", 6); + psMetadataAddS16(md, PS_LIST_TAIL, "item7", 0, "I am S16", -666); + psMetadataAddU8(md, PS_LIST_TAIL, "item8", 0, "I am U8", 6); + psMetadataAddU16(md, PS_LIST_TAIL, "item9", 0, "I am U16", 666); + psMetadataAddU32(md, PS_LIST_TAIL, "item10", 0, "I am U32", 666); + psMetadataAddS64(md, PS_LIST_TAIL, "item11", 0, "I am S64", 666); + psMetadataAddU64(md, PS_LIST_TAIL, "item12", 0, "I am U64", 666); + + psMetadataAddS32(newMD, PS_LIST_TAIL, "ITEM01", 0, NULL, 666); + psMetadata *newestMD = NULL; + newestMD = psMetadataAlloc(); + psMetadataAddVector(newestMD, PS_LIST_TAIL, "VECTORNEW", 0, "Newest VECTOR", vec); + psMetadataAddStr(newestMD, PS_LIST_TAIL, "cell", 0, "I am a p-Star", "pStArRs"); + psMetadataAddMetadata(newMD, PS_LIST_TAIL, "META NEW", 0, "I AM Newest METADATA", newestMD); + psMetadataAddF32(newMD, PS_LIST_TAIL, "ITEM02", 0, "I AM FLOAT", 666.6); + psMetadataAddF64(newMD, PS_LIST_TAIL, "ITEM03", 0, "I AM DOUBLE", 666.666); + + psMetadataAddMetadata(md, PS_LIST_TAIL, "metadata7", 0, "I am a metadata", newMD); + psFree(time); + psFree(newestMD); + psFree(vec); + psFree(newMD); + return md; +} + +psS32 testMetadataPrint(void) +{ + psMetadata *meta = NULL; + meta = setupMeta2(); + psMetadataPrint(NULL, meta, 0); + psFree(meta); + return 0; +} + +psS32 testMetadataItemCompare(void) +{ + psMetadataItem *compare = NULL; + psMetadataItem *template = NULL; + psMetadataItem *itemCopy = NULL; + psMetadataItem *item = psMetadataItemAlloc("Snickers", PS_DATA_BOOL, "No Comment", true) + ; + if (!item->data.B) { + return 1; + } + + //compare = NULL + if ( psMetadataItemCompare(compare, item)) { + return 2; + } + //template = NULL + if ( psMetadataItemCompare(item, template)) { + return 3; + } + + template = psMetadataItemAlloc("Milky Way", PS_DATA_BOOL, "No Comment", true) + ; + compare = psMetadataItemAlloc("Snickers", PS_DATA_S32, "No Comment", 1); + //template->name != item->name + if ( psMetadataItemCompare(template, item) ) { + return 4; + } + //compare->type != item->type + if ( psMetadataItemCompare(compare, item) ) { + printf("\ncompare == item b/c of type\n"); + // return 5; + } + + //compare->type == F32 compare->data.F32 = 1.4 + psFree(compare); + compare = psMetadataItemAlloc("Snickers", PS_DATA_F64, "No Comment", 1.00001); + if ( psMetadataItemCompare(compare, item) ) { + printf("\ncompare2 == item b/c of type\n"); + // return 5; + } + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_S32, "No Comment", 1) + ; + if ( psMetadataItemCompare(compare, template) ) { + printf("\ncompare3 == item b/c of type\n"); + // return 5; + } + + psFree(template) + ; + template = psMetadataItemAlloc("Snickers", PS_DATA_F32, "No Comment", 1.00001) + ; + if ( psMetadataItemCompare(compare, template) ) { + printf("\ncompare4 == item b/c of type\n"); + // return 5; + } + + + //itemCopy == item + itemCopy = psMetadataItemCopy(item); + if ( !psMetadataItemCompare(itemCopy, item) ) { + return 7; + } + + psFree(compare); + psFree(template) + ; + psFree(itemCopy); + psFree(item); + + return 0; +} + +psS32 testMetadataItemParse(void) +{ + + return 0; +} + + Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_02.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_02.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_02.c (revision 12167) @@ -0,0 +1,145 @@ +/** @file tst_psMetadata_02.c + * + * @brief Test driver for psMetadata functions + * + * This test driver contains the following tests for psMetadata: + * Test A - Allocate metadata items + * Test B - Attempt to create metadata item with null name + * Test C - Attempt to create metadata item with invalid type + * Test D - Allocate metadata + * Test E - Attempt to add metadata item to null metadata + * Test F - Attempt to add null metadata item to metadata + * Test G - Free psMetadata + * + * @author Ross Harman, MHPCC + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-09-26 21:13:33 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static void printMetadataItem(psMetadataItem *metadataItem) +{ + printf("Key Name: %8s ", metadataItem->name); + printf("Key mdType: 0x%08x ", metadataItem->type); + + switch (metadataItem->type) { + case PS_DATA_METADATA_MULTI: + printf("Key Value: %17c", ' '); + break; + case PS_DATA_BOOL: + printf("Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_STRING: + printf("Key Value: %15s ", (char*)metadataItem->data.V); + break; + default: + printf("Bad type: %d ", metadataItem->type); + } + printf("Key Comment: %s\n", metadataItem->comment); +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psMetadataItem *item1 = NULL; + psMetadata *metadata = NULL; + psMetadataItem *item2 = NULL; + psMetadataItem *item3 = NULL; + psMetadataItem *item4 = NULL; + psMetadataItem *item5 = NULL; + psMetadataItem *badItem = NULL; + + + // Test A - Allocate metadata items + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate metadata items"); + item1 = psMetadataItemAlloc("myItem1", PS_DATA_BOOL, "I am a boolean", true); + item2 = psMetadataItemAlloc("myItem2", PS_DATA_S32, "I am a signed integer", 111); + item3 = psMetadataItemAlloc("myItem3", PS_DATA_F32, "I am a single precision floating point", 222.222); + item4 = psMetadataItemAlloc("myItem4", PS_DATA_F64, "I am a double precision floating point", 333.333); + item5 = psMetadataItemAlloc("myItem5", PS_DATA_STRING, "I am a string", "HELLO WORLD"); + printMetadataItem(item1); + printMetadataItem(item2); + printMetadataItem(item3); + printMetadataItem(item4); + printMetadataItem(item5); + printFooter(stdout, "psMetadata", "Test A - Allocate metadata items", true); + + + // Test B - Attempt to create metadata item with null name + printNegativeTestHeader(stdout,"psMetadata", "Test B - Attempt to create metadata item with null name", + "Null value for name not allowed", 0); + psLogMsg(__func__,PS_LOG_INFO,"Following should produce error for null name."); + badItem = psMetadataItemAlloc(NULL, PS_DATA_STRING, "I am a string", "HELLO WORLD"); + if (badItem != NULL) { + psError(PS_ERR_UNKNOWN, true,"psMetadataItemAlloc did not return null with null name item."); + return 10; + } + printFooter(stdout, "psMetadata", "Test B - Attempt to create metadata item with null name", true); + + + // Test C - Attempt to create metadata item with invalid type + printNegativeTestHeader(stdout,"psMetadata", "Test C - Attempt to create metadata item with invalid type", + "Invalid psDataType: 6", 0); + badItem = psMetadataItemAlloc("badItem", -1, "I am bad", "Bad comment"); + printFooter(stdout, "psMetadata", "Test C - Attempt to create metadata item with invalid type", true); + + + // Test D - Allocate metadata + printPositiveTestHeader(stdout, "psMetadata", "Test D - Allocate metadata"); + metadata = psMetadataAlloc(); + printFooter(stdout, "psMetadata", "Test D - Allocate metadata", true); + + + // Test E - Attempt add metadata item to null metadata + printNegativeTestHeader(stdout,"psMetadata", "Test E - Attempt to add metadata item to null metadata", + "Null metadata collection not allowed", 0); + psMetadataAddItem(NULL, item1, PS_LIST_HEAD, PS_META_DEFAULT); + printFooter(stdout, "psMetadata", "Test E - Attempt to add metadata item to null metadata", true); + + + // Test F - Attempt add null metadata item to metadata + printNegativeTestHeader(stdout,"psMetadata", "Test F - Attempt to add null metadata item to metadata", + "Null metadata item not allowed", 0); + psMetadataAddItem(metadata, NULL, PS_LIST_HEAD, PS_META_DEFAULT); + printFooter(stdout, "psMetadata", "Test F - Attempt to add null metadata item to metadata", true); + + + // Test G - Free psMetadata + printPositiveTestHeader(stdout, "psMetadata", "Test G - Free psMetadata"); + psFree(item1); + psFree(item2); + psFree(item3); + psFree(item4); + psFree(item5); + psFree(badItem); + psFree(metadata); + if(psMemCheckLeaks(0, NULL, stdout,false) ) { + psError(PS_ERR_UNKNOWN,true,"Memory leaks detected."); + return 10; + } + psMemCheckCorruption(0); + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMetadata", "Test G - Free psMetadata", true); + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_03.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_03.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_03.c (revision 12167) @@ -0,0 +1,241 @@ +/** @file tst_psMetadata_03.c +* +* @brief Test driver for psMetadata functions +* +* This test driver contains the following tests for psMetadata: +* Test A - Allocate metadata and items +* Test B - Remove items from metadata by name +* Test C - Remove items from metadata by index +* Test D - Attempt to use null metadata +* Test E - Attempt to remove non-existant metadata item by name +* Test F - Attempt to remove non-existant metadata item by index +* Test G - Attempt to add item to an invalid metadata structure +* Test H - Attempt to add item to an invalid metadata structure +* Test I - Attempt to add item with a null name +* Test J - Attempt to add item to an invalid metadata structure +* Test K - Free psMetadata +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-09-26 21:13:33 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static void printMetadataItem(psMetadataItem *metadataItem) +{ + printf("Key Name: %8s ", metadataItem->name); + printf("Key mdType: 0x%08x ", metadataItem->type); + + switch (metadataItem->type) { + case PS_DATA_METADATA_MULTI: + printf("Key Value: %17c", ' '); + break; + case PS_DATA_BOOL: + printf("Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_STRING: + printf("Key Value: %15s ", (char*)metadataItem->data.V); + break; + default: + printf("Bad type: %d ", metadataItem->type); + } + printf("Key Comment: %s\n", metadataItem->comment); +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psMetadataItem *item1 = NULL; + psMetadataItem *item2 = NULL; + psMetadataItem *item3 = NULL; + psMetadataItem *item4 = NULL; + psMetadataItem *errItem = NULL; + psMetadata *metadata = NULL; + psMetadata *errMetadata = NULL; + psHash *mdTable = NULL; + psList *mdList = NULL; + char *errName = NULL; + + // Test A - Allocate metadata and items + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate metadata items"); + metadata = psMetadataAlloc(); + item1 = psMetadataItemAlloc("myItem1", PS_DATA_BOOL, "I am a boolean", true); + item2 = psMetadataItemAlloc("myItem2", PS_DATA_S32, "I am a integer", 55); + item3 = psMetadataItemAlloc("myItem3", PS_DATA_BOOL, "I am a boolean", false); + item4 = psMetadataItemAlloc("myItem4", PS_DATA_S32, "I am a integer", 66); + errItem = psMetadataItemAlloc("errItem", PS_DATA_S32, "I am a integer", 99); + printMetadataItem(item1); + printMetadataItem(item2); + printMetadataItem(item3); + printMetadataItem(item4); + printFooter(stdout, "psMetadata", "Test A - Allocate metadata items", true); + + + // Test B - Remove items from metadata by name + printPositiveTestHeader(stdout, "psMetadata", "Test B - Remove items from metadata by name"); + if(!psMetadataAddItem(metadata, item1, PS_LIST_HEAD, PS_META_DEFAULT)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return true when adding by name."); + return 10; + } + if(!psMetadataAdd(metadata,PS_LIST_HEAD,"myItem2", PS_DATA_S32, "I am S32 integer",77)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return true when adding by name."); + return 11; + } + if (!psMetadataRemove(metadata, 0, "myItem1")) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return true when removing by name."); + return 12; + } + if (!psMetadataRemove(metadata, 0, "myItem2")) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return true when removing by name."); + return 13; + } + printFooter(stdout, "psMetadata", "Test B - Remove items from metadata by name", true); + + + // Test C - Remove items from metadata by index + printPositiveTestHeader(stdout, "psMetadata", "Test C - Remove items from metadata by index"); + if ( ! psMetadataAddItem(metadata, item3, PS_LIST_HEAD, PS_META_DEFAULT) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return true when adding by index."); + return 14; + } + if ( ! psMetadataAdd(metadata,PS_LIST_HEAD,"myItem4", PS_DATA_S32, "I am S32 integer",88) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return true when adding by index."); + return 15; + } + if( ! psMetadataRemove(metadata, 0, NULL) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return true when removing by index."); + return 16; + } + if ( ! psMetadataRemove(metadata, 0, NULL ) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return true when removing by index."); + return 17; + } + printFooter(stdout, "psMetadata", "Test C - Remove items from metadata by index", true); + + + // Test D - Attempt to use null metadata + printNegativeTestHeader(stdout,"psMetadata", "Test D - Attempt to use null metadata", + "Null metadata collection not allowed", 0); + if ( psMetadataRemove(NULL, 0, NULL) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return false when removing from null metadata."); + return 18; + } + printFooter(stdout, "psMetadata", "Test D - Attempt to use null metadata", true); + + + // Test E - Attempt to remove non-existant metadata item by name + printNegativeTestHeader(stdout,"psMetadata", "Test E - Attempt to remove non-existant metadata item by name", + "Couldn't find metadata item. Name: AARGH", 0); + if( psMetadataRemove(metadata, 0, "AARGH") ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return false when removing non-existant item."); + return 19; + } + printFooter(stdout, "psMetadata", "Test E - Attempt to remove non-existant metadata item by name", true); + + + // Test F - Attempt to remove non-existant metadata item by index + printNegativeTestHeader(stdout,"psMetadata", "Test E - Attempt to remove non-existant metadata item by index", + "Couldn't find metadata item in list. Index: 22", 0); + if( psMetadataRemove(metadata, 22, NULL) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return false when removing non-existant item."); + return 20; + } + printFooter(stdout, "psMetadata", "Test E - Attempt to remove non-existant metadata item by index", true); + + + // Test G - Attempt to add item to an invalid metadata structure + printNegativeTestHeader(stdout,"psMetadata","Test G - Attempt to add item to metadata w/o hash table", + "Couldn't add item to invalid metadata structure.",0); + errMetadata = psMetadataAlloc(); + mdTable = errMetadata->hash; + errMetadata->hash = NULL; + if ( psMetadataAddItem(errMetadata, item3, PS_LIST_HEAD, PS_META_DEFAULT) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return false w/ invalid metadata struct w/o hash table."); + return 21; + } + if ( psMetadataRemove(errMetadata, PS_LIST_HEAD, "errItem") ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return false w/ invalid metadata struct w/o hash table."); + return 31; + } + errMetadata->hash = mdTable; + printFooter(stdout,"psMetadata","Test G - Attempt to add item to invalid metadata w/o hash table", true); + + // Test H - Attempt to add item to an invalid metadata structure + printNegativeTestHeader(stdout,"psMetadata","Test H - Attempt to add item to metadata w/o link list", + "Couldn't add item to invalid metadata structure.",0); + mdList = errMetadata->list; + errMetadata->list = NULL; + if ( psMetadataAddItem(errMetadata, item3, PS_LIST_HEAD, PS_META_DEFAULT) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return false w/ invalid metadata struct w/o link list."); + return 22; + } + if ( psMetadataRemove(errMetadata, PS_LIST_HEAD, "errItem") ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataRemove did not return false w/ invalid metadata struct w/o link list."); + return 32; + } + errMetadata->list = mdList; + printFooter(stdout,"psMetadata","Test H - Attempt to add item to invalid metadata w/o link list", true); + + // Test I - Attempt to add item with a null name + printNegativeTestHeader(stdout,"psMetadata","Test I - Attempt to add item with null name", + "Couldn't add item with null name.",0); + errName = errItem->name; + errItem->name = NULL; + if ( psMetadataAddItem(errMetadata, errItem, PS_LIST_HEAD, PS_META_DEFAULT) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return false with item with null name."); + return 23; + } + errItem->name = errName; + printFooter(stdout,"psMetadata","Test I - Attempt to add item with null name", true); + + // Test J - Attempt to add item to an invalid metadata structure + printNegativeTestHeader(stdout,"psMetadata","Test J - Attempt to add item to metadata w/o hash table", + "Couldn't add item to invalid metadata structure.",0); + mdTable = errMetadata->hash; + errMetadata->hash = NULL; + if (psMetadataAdd(errMetadata, PS_LIST_HEAD, "errItem", PS_DATA_S32, "Integer",22) ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem did not return false w/ invalid metadata struct w/o hash table."); + return 24; + } + errMetadata->hash = mdTable; + printFooter(stdout,"psMetadata","Test J - Attempt to add item to invalid metadata w/o hash table", true); + + // Test K - Free psMetadata + printPositiveTestHeader(stdout, "psMetadata", "Test K - Free psMetadata"); + psFree(metadata); + psFree(item1); + psFree(item2); + psFree(item3); + psFree(item4); + psFree(errItem); + psFree(errMetadata); + if( psMemCheckLeaks(0, NULL, stdout,false) != 0 ) { + psError(PS_ERR_UNKNOWN, true,"Memory leaks detected."); + return 25; + } + psMemCheckCorruption(0); + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMetadata", "Test K - Free psMetadata", true); + + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_04.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_04.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_04.c (revision 12167) @@ -0,0 +1,332 @@ +/** @file tst_psMetadata_04.c + * + * @brief Test driver for psMetadata functions + * + * This test driver contains the following tests for psMetadata: + * Test A - Allocate metadata and items + * Test B - Lookup metadata item by name + * Test C - Attempt to use null metadata + * Test D - Attempt to use null key + * Test E - Attempt to lookup non-existant metadata item + * Test F - Lookup metadata item by index + * Test G - Lookup metadata item and return psS32 value + * Test H - Lookup metadata item and return psF64 value + * Test I - Lookup metadata item and return psVector pointer + * Test J - Lookup metadata item and return psMetadata pointer + * Test K - Lookup metadata item and return psString value + * Test L - Attempt to use null metadata + * Test M - Attempt to get non-existant metadata item + * Test N - Attempt to look up with an invalid metadata object + * Test O - Attempt get item with an invalid metadata object + * Test P - Attempt get value of non-existant metadata item + * Test Q - Free psMetadata + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-02-03 00:12:02 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + * + */ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static void printMetadataItem(psMetadataItem *metadataItem) +{ + printf("Key Name: %8s ", metadataItem->name); + printf("Key mdType: 0x%08x ", metadataItem->type); + + switch (metadataItem->type) { + case PS_DATA_METADATA_MULTI: + printf("Key Value: %17c", ' '); + break; + case PS_DATA_BOOL: + printf("Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_STRING: + printf("Key Value: %15s ", (char*)metadataItem->data.V); + break; + default: + printf("Bad type: %d ", metadataItem->type); + } + printf("Key Comment: %s\n", metadataItem->comment); +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psBool status = 0; + psMetadataItem *item1 = NULL; + psMetadataItem *item2 = NULL; + psMetadataItem *item3 = NULL; + psMetadataItem *item4 = NULL; + psMetadataItem *item5 = NULL; + psMetadataItem *item6 = NULL; + psMetadataItem *item7 = NULL; + psMetadataItem *item8 = NULL; + psMetadataItem *item = NULL; + psMetadata *metadata = NULL; + psMetadata *newMD = NULL; + char string[50]; + psHash* tmpTable = NULL; + psList* tmpList = NULL; + + + // Test A - Allocate metadata and items + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate metadata items"); + psVector *vec = psVectorAlloc(5, PS_TYPE_S32); + metadata = psMetadataAlloc(); + newMD = psMetadataAlloc(); + strncpy(string, "String was here", 50); + psMetadataAddF64(newMD, PS_LIST_HEAD, "yourItem1", 0, "I am a psF64", 4.14); + item1 = psMetadataItemAlloc("myItem1", PS_DATA_BOOL, "I am a boolean", true); + item2 = psMetadataItemAlloc("myItem2", PS_DATA_S32, "I am a integer", 55); + item3 = psMetadataItemAlloc("myItem3", PS_DATA_BOOL, "I am a boolean", false); + item4 = psMetadataItemAlloc("myItem4", PS_DATA_S32, "I am a integer", 66); + item5 = psMetadataItemAlloc("myItem5", PS_DATA_F64, "I am a double", 3.14); + item6 = psMetadataItemAlloc("myItem6", PS_DATA_VECTOR, "I am a vector", vec); + item7 = psMetadataItemAlloc("myItem7", PS_DATA_METADATA, "I am a metadata", newMD); + item8 = psMetadataItemAlloc("myItem8", PS_DATA_STRING, "I am a string", string); + printMetadataItem(item1); + printMetadataItem(item2); + printMetadataItem(item3); + printMetadataItem(item4); + printMetadataItem(item5); + psMetadataAddItem(metadata, item1, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item2, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item3, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item4, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item5, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item6, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item7, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item8, PS_LIST_HEAD, PS_META_DEFAULT); + psMemDecrRefCounter(vec); // vs. psFree, which now would set vec to NULL (want to keep it to comparison later) + printFooter(stdout, "psMetadata", "Test A - Allocate metadata items", true); + + + // Test B - Lookup metadata item by name + printPositiveTestHeader(stdout, "psMetadata", "Test B - Lookup metadata item by name"); + item = psMetadataLookup(metadata, "myItem2"); + printf("Found item named %s\n", item->name); + if(item == NULL) { + printf("ERROR: Item should not be null\n"); + return 10; + } + printFooter(stdout, "psMetadata", "Test B - Lookup metadata item by name", true); + + + // Test C - Attempt to use null metadata + printNegativeTestHeader(stdout,"psMetadata", "Test C - Attempt to use null metadata", + "Null metadata collection not allowed", 0); + if ( psMetadataLookup(NULL, "myItem2") != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataLookup did not return NULL with null metadata."); + return 11; + } + printFooter(stdout, "psMetadata", "Test C - Attempt to use null metadata", true); + + + // Test D - Attempt to use null key + printNegativeTestHeader(stdout,"psMetadata", "Test D - Attempt to use null key", + "Null key name not allowed", 0); + if ( psMetadataLookup(metadata, NULL) != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadata did not return NULL with null key."); + return 12; + } + printFooter(stdout, "psMetadata", "Test D - Attempt to use null key", true); + + + // Test E - Attempt to lookup non-existant metadata item + printNegativeTestHeader(stdout,"psMetadata", "Test E - Attempt to lookup non-existant metadata item", + "Couldn't find metadata item. Name: AARGH", 0); + if ( psMetadataLookup(metadata, "AARGH") != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadata did not return NULL with a non-existant item."); + return 13; + } + printFooter(stdout, "psMetadata", "Test E - Attempt to lookup non-existant metadata item", true); + + + // Test F - Lookup metadata item by index + printPositiveTestHeader(stdout, "psMetadata", "Test F - Lookup metadata item by index"); + item = psMetadataGet(metadata, 0); + printf("Found item named %s\n", item->name); + if(item == NULL) { + printf("ERROR: Item should not be null\n"); + return 14; + } + printFooter(stdout, "psMetadata", "Test F - Lookup metadata item by index", true); + + // Test G - Lookup metadata item and return psS32 value + printPositiveTestHeader(stdout, "psMetadata", "Test G - Lookup metadata item and return psS32 value"); + psS32 valueS32 = 0; + valueS32 = psMetadataLookupS32(&status, metadata, "myItem2"); + if(valueS32 != 55) { + printf("ERROR: Bad value, %d, Expected 55\n", valueS32); + return 15; + } else if(! status) { + printf("ERROR: Bad status, %d\n", status); + return 15; + } + printFooter(stdout, "psMetadata", "Test G - Lookup metadata item and return psS32 value", true); + + // Test H - Lookup metadata item and return psF64 value + printPositiveTestHeader(stdout, "psMetadata", "Test H - Lookup metadata item and return psF64 value"); + psF64 valueF64 = 0.0; + valueF64 = psMetadataLookupF64(&status, metadata, "myItem5"); + if(fabs(valueF64-3.14) > FLT_EPSILON) { + printf("ERROR: Bad value, %g, Expected 3.14\n", valueF64); + return 16; + } else if(! status) { + printf("ERROR: Bad status, %d\n", status); + return 16; + } + printFooter(stdout, "psMetadata", "Test H - Lookup metadata item and return psF64 value", true); + + // Test I - Lookup metadata item and return psVector pointer + printPositiveTestHeader(stdout, "psMetadata", "Test I - Lookup metadata item and return psVector pointer"); + psVector *valueVec = psMetadataLookupPtr(&status, metadata, "myItem6"); + if(valueVec != vec) { + printf("ERROR: Bad vector pointer\n"); + return 17; + } else if(! status) { + printf("ERROR: Bad status, %d\n", status); + return 17; + } + printFooter(stdout, "psMetadata", "Test I - Lookup metadata item and return psVector pointer", true); + + // Test J - Lookup metadata item and return psMetadata pointer + printPositiveTestHeader(stdout, "psMetadata", "Test J - Lookup metadata item and return psMetadata pointer"); + psMetadata *metaData = NULL; + metaData = psMetadataLookupMD(&status, metadata, "myItem7"); + if(metaData != newMD) { + printf("ERROR: Bad metadata pointer\n"); + return 25; + } else if(! status) { + printf("ERROR: Bad status, %d\n", status); + return 25; + } + printFooter(stdout, "psMetadata", "Test J - Lookup metadata item and return psMetadata pointer", true); + + // Test K - Lookup metadata item and return psString value + printPositiveTestHeader(stdout, "psMetadata", "Test K - Lookup metadata item and return psString value"); + psString newSTR; + newSTR = psMetadataLookupStr(&status, metadata, "myItem8"); + if( strncmp(newSTR, string, 50) ) { + printf("ERROR: Bad string value \n"); + return 26; + } else if(! status) { + printf("ERROR: Bad status, %d\n", status); + return 26; + } + printFooter(stdout, "psMetadata", "Test K - Lookup metadata item and return psString value", true); + + // Test L - Attempt to use null metadata + printNegativeTestHeader(stdout,"psMetadata", "Test L - Attempt to use null metadata", + "Null metadata collection not allowed", 0); + item = psMetadataGet(NULL, 0); + if ( item != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGet did not return NULL with null metadata structure"); + return 18; + } + printFooter(stdout, "psMetadata", "Test L - Attempt to use null metadata", true); + + + // Test M - Attempt to get non-existant metadata item + printNegativeTestHeader(stdout,"psMetadata", "Test M - Attempt to get non-existant metadata item", + "Couldn't find metadata item with given index. Index: 22", 0); + if ( psMetadataGet(metadata, 22) != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGet did not return NULL with non-existant metadata item"); + return 19; + } + printFooter(stdout, "psMetadata", "Test M - Attempt to get non-existant metadata item", true); + + // Test N - Attempt to look up with an invalid metadata object + printNegativeTestHeader(stdout,"psMetadata","Test N - Attemp to look up with an invalid metadata", + "Lookup item with invalid metadata object.", 0 ); + tmpTable = metadata->hash; + metadata->hash = NULL; + if ( psMetadataLookup(metadata,"myItem2") != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataLookup did not return null for invalid metadata object"); + return 20; + } + metadata->hash = tmpTable; + printFooter(stdout, "psMetadata","Test N - Attempt to lookup an invalid metadata object.",true); + + // Test O - Attempt get item with an invalid metadata object + printNegativeTestHeader(stdout,"psMetadata","Test O - Attempt to get item with an invalid metadata", + "Get item with invalid metadata object.", 0 ); + tmpList = metadata->list; + metadata->list = NULL; + if ( psMetadataGet(metadata,0) != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataLookup did not return null for invalid metadata object"); + return 21; + } + metadata->list = tmpList; + printFooter(stdout, "psMetadata","Test O - Attempt to get item with invalid metadata object",true); + + // Test P - Attempt get psS32 value of non-existant metadata item + printPositiveTestHeader(stdout, "psMetadata", "Test P - Attempt get psS32 value of non-existant metadata item"); + valueS32 = psMetadataLookupS32(&status, metadata, "myItem22"); + if(status) { + printf("ERROR: Bad status, %d, \n", status); + return 22; + } + printFooter(stdout, "psMetadata","Test P - Attempt get psS32 value of non-existant metadata item",true); + + // Test P - Attempt get psF64 value of non-existant metadata item + printPositiveTestHeader(stdout, "psMetadata", "Test P - Attempt get psF64 value of non-existant metadata item"); + valueF64 = psMetadataLookupF64(&status, metadata, "myItem22"); + if(status) { + printf("ERROR: Bad status, %d, \n", status); + return 23; + } + printFooter(stdout, "psMetadata","Test P - Attempt get psF64 value of non-existant metadata item",true); + + // Test P - Attempt get psVector value of non-existant metadata item + printPositiveTestHeader(stdout, "psMetadata", "Test P - Attempt get psVector value of non-existant metadata item"); + valueVec = psMetadataLookupPtr(&status, metadata, "myItem22"); + if(status) { + printf("ERROR: Bad status, %d, \n", status); + return 24; + } + printFooter(stdout, "psMetadata","Test P - Attempt get psVector value of non-existant metadata item",true); + + // Test Q - Free psMetadata + printPositiveTestHeader(stdout, "psMetadata", "Test Q - Free psMetadata"); + // psFree(string); + psFree(newMD); + psFree(item1); + psFree(item2); + psFree(item3); + psFree(item4); + psFree(item5); + psFree(item6); + psFree(item7); + psFree(item8); + psFree(metadata); + if ( psMemCheckLeaks(0, NULL, stdout,false) != 0 ) { + psError(PS_ERR_UNKNOWN, true,"memory leaks detected."); + return 23; + } + psMemCheckCorruption(0); + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + return 24; + } + printFooter(stdout, "psMetadata", "Test Q - Free psMetadata", true); + + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_05.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_05.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_05.c (revision 12167) @@ -0,0 +1,342 @@ + + +/** @file tst_psMetadata_05.c +* +* @brief Test driver for psMetadata functions +* +* This test driver contains the following tests for psMetadata: +* Test A - Allocate metadata and items +* Test B - Set iterator at second index +* Test C - Get next item at index +* Test D - Get next item at index and string +* Test E - Get previous item at index +* Test F - Write metadata item to file +* Test G - Attempt to use null metadata with setIterator +* Test H - Attempt to use null metadata with getNext +* Test I - Attempt to use null metadata with getPrevious +* Test J - Attempt to use null file with itemPrint +* Test K - Attempt to use null format with itemPrint +* Test L - Attempt to use null item with itemPrint +* Test M - Free psMetadata +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-09-26 21:13:33 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static void printMetadataItem(psMetadataItem *metadataItem) +{ + printf("Key Name: %8s ", metadataItem->name); + printf("Key mdType: 0x%08x ", metadataItem->type); + + switch (metadataItem->type) { + case PS_DATA_METADATA_MULTI: + printf("Key Value: %17c", ' '); + break; + case PS_DATA_BOOL: + printf("Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_STRING: + printf("Key Value: %15s ", (char*)metadataItem->data.V); + break; + default: + printf("Bad type: %d ", metadataItem->type); + } + printf("Key Comment: %s\n", metadataItem->comment); +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psMetadataItem *item1 = NULL; + psMetadataItem *item2 = NULL; + psMetadataItem *item3 = NULL; + psMetadataItem *item4 = NULL; + psMetadataItem *item5 = NULL; + psMetadataItem *item6 = NULL; + psMetadataItem *item7 = NULL; + // psMetadataItem *item8 = NULL; + psMetadata *metadata = NULL; + FILE *fd = NULL; + + // Test A - Allocate metadata and items + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate metadata items"); + metadata = psMetadataAlloc(); + item1 = psMetadataItemAlloc("myItem1", PS_DATA_BOOL, "I am a boolean", true); + item2 = psMetadataItemAlloc("myItem2", PS_DATA_S32, "I am a integer", 55); + item3 = psMetadataItemAlloc("myItem3", PS_DATA_BOOL, "I am a boolean", false); + item4 = psMetadataItemAlloc("myItem4", PS_DATA_S32, "I am a integer", 66); + item5 = psMetadataItemAlloc("myItem5", PS_DATA_F32, "I am a float", 3.14); + item6 = psMetadataItemAlloc("myItem6", PS_DATA_F64,"I am a double", 6.28); + item7 = psMetadataItemAlloc("myItem7", PS_DATA_STRING, "I am a string", "GNIRTS"); + // item8 = psMetadataItemAlloc("myItem8", PS_TYPE_PTR, PS_META_UNKNOWN, "I am unknown"); + printMetadataItem(item1); + printMetadataItem(item2); + printMetadataItem(item3); + printMetadataItem(item4); + psMetadataAddItem(metadata, item1, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item2, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item3, PS_LIST_HEAD, PS_META_DEFAULT); + psMetadataAddItem(metadata, item4, PS_LIST_HEAD, PS_META_DEFAULT); + printFooter(stdout, "psMetadata", "Test A - Allocate metadata items", true); + + /* + // Test B - Set iterator at second index + printPositiveTestHeader(stdout, "psMetadata", "Test B - Set iterator at second index"); + if (!psMetadataSetIterator(metadata, 2)) { + psError(PS_ERR_UNKNOWN,true,"Failed to set iterator"); + return 100; + } + printFooter(stdout, "psMetadata", "Test B - Set iterator at second index", true); + + + // Test C - Get next item at index + printPositiveTestHeader(stdout, "psMetadata", "Test C - Get next item at index"); + item = psMetadataGetNext(metadata, NULL, 2); + if(item == NULL) { + printf("ERROR: Item should not be null\n"); + } else { + printf("Found item named %s\n", item->name); + } + printFooter(stdout, "psMetadata", "Test C - Get next item at index", true); + + + // Test D - Get next item at index and string + printPositiveTestHeader(stdout, "psMetadata", "Test D - Get next item at index and string"); + item = psMetadataGetNext(metadata, "myItem1", 1); + if(item == NULL) { + printf("ERROR: Item should not be null\n"); + } else { + printf("Found item named %s\n", item->name); + } + printFooter(stdout, "psMetadata", "Test D - Get next item at index and string", true); + + + // Test E - Get previous item at index + printPositiveTestHeader(stdout, "psMetadata", "Test E - Get previous item at index"); + item = psMetadataGetPrevious(metadata, NULL, 1); + if(item == NULL) { + printf("ERROR: Item should not be null\n"); + } else { + printf("Found item named %s\n", item->name); + } + if( psMetadataGetPrevious(metadata,"myItem3",1) == NULL) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGetPrevious did not return an item from metadata."); + return 45; + } + tmpList = metadata->list; + metadata->list = NULL; + if ( psMetadataGetPrevious(metadata,NULL,1) != NULL) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGetPrevious did not return null for invalid metadata."); + return 50; + } + metadata->list = tmpList; + printFooter(stdout, "psMetadata", "Test E - Get previous item at index", true); + + */ + // Test F - Write metadata item to file + printPositiveTestHeader(stdout, "psMetadata", "Test F - Write metadata item to file"); + fd = fopen("temp/tst_psMetadata05_OUT", "w"); + if(fd == NULL) { + printf("ERROR: Couldn't open file for writing\n"); + } + + if (psMetadataItemPrint(fd, "S32 = %ld\n", item2) == false) { + printf("ERROR: Return type should be true\n"); + return 10; + } + + if (psMetadataItemPrint(fd, "S32 = %+06.1f\n", item2) == false) { + printf("ERROR: Return type should be true\n"); + return 10; + } + + if (psMetadataItemPrint(fd, "BOL = %ld\n", item3) == false) { + printf("ERROR: Return type should be true\n"); + return 11; + } + + if (psMetadataItemPrint(fd, "F32 = %g\n", item5) == false) { + printf("ERROR: Return type should be true\n"); + return 12; + } + + if (psMetadataItemPrint(fd, "F32 = % #i\n", item5) == false) { + printf("ERROR: Return type should be true\n"); + return 12; + } + + if (psMetadataItemPrint(fd, "F64 = %g\n", item6) == false) { + printf("ERROR: Return type should be true\n"); + return 13; + } + + if (psMetadataItemPrint(fd, "STR = %s\n", item7) == false) { + printf("ERROR: Return type should be true\n"); + return 14; + } + // psLogMsg(__func__,PS_LOG_INFO,"Attempt to print item of invalid type, should generate error message"); + // if (psMetadataItemPrint(fd, "UNK = \n", item8) == true) { + // printf("ERROR: Return type should be false\n"); + // fclose(fd); + // return 15; + // } + fclose(fd); + + fd = fopen("temp/tst_psMetadata05_OUT", "r"); + if(fd == NULL) { + printf("ERROR: Couldn't open file for reading\n"); + } + + char line[256]; + char truth1[] = "S32 = 55"; + fgets(line, 256, fd); + if(strncmp(line, truth1, 8)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth1); + } + + char truth1b[] = "S32 = +055.0"; + fgets(line, 256, fd); + if(strncmp(line, truth1b, 12)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth1b); + } + + char truth2[] = "BOL = 0"; + fgets(line, 256, fd); + if(strncmp(line, truth2, 7)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth2); + } + + char truth3[] = "F32 = 3.14"; + fgets(line, 256, fd); + if(strncmp(line, truth3, 10)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth3); + } + + char truth3b[] = "F32 = 3"; + fgets(line, 256, fd); + if(strncmp(line, truth3b, 8)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth3b); + } + + char truth4[] = "F64 = 6.28"; + fgets(line, 256, fd); + if(strncmp(line, truth4, 10)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth4); + } + + char truth5[] = "STR = GNIRTS"; + fgets(line, 256, fd); + if(strncmp(line, truth5, 12)) { + printf("ERROR: Data in file is not as expected. Value: %s. Should be: %s\n", line, truth5); + } + + fclose(fd); + printFooter(stdout, "psMetadata", "Test F - Write metadata item to file", true); + /* + // Test G - Attempt to use null metadata with setIterator + printNegativeTestHeader(stdout,"psMetadata", "Test G - Attempt to use null metadata with setIterator", + "Null metadata collection not allowed", 0); + if( psMetadataSetIterator(NULL, 0)) { + psError(PS_ERR_UNKNOWN,true,"Set iterator did not detect invalid parameter."); + return 101; + } + tmpList = metadata->list; + metadata->list = NULL; + if( psMetadataSetIterator(metadata,0)) { + psError(PS_ERR_UNKNOWN,true,"Set iterator did not detect null list."); + return 102; + } + metadata->list = tmpList; + printFooter(stdout, "psMetadata", "Test G - Attempt to use null metadata with setIterator", true); + + + // Test H - Attempt to use null metadata with getNext + printNegativeTestHeader(stdout,"psMetadata", "Test H - Attempt to use null metadata with getNext", + "Null metadata collection not allowed", 0); + if( psMetadataGetNext(NULL, "myItem2", 0) != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGetNext did not return null for null metadata."); + return 40; + } + tmpList = metadata->list; + metadata->list = NULL; + if ( psMetadataGetNext(metadata, "myItem2", 0) != NULL ) { + psError(PS_ERR_UNKNOWN, true,"psMetadataGetNext did not return null for invalid metadata."); + return 41; + } + metadata->list = tmpList; + + printFooter(stdout, "psMetadata", "Test H - Attempt to use null metadata with getNext", true); + + + // Test I - Attempt to use null metadata with getPrevious + printNegativeTestHeader(stdout,"psMetadata", "Test I - Attempt to use null metadata with getPrevious", + "Null metadata collection not allowed", 0); + psMetadataGetPrevious(NULL, "myItem2", 0); + printFooter(stdout, "psMetadata", "Test I - Attempt to use null metadata with getPrevious", true); + + */ + // Test J - Attempt to use null file with itemPrint + printNegativeTestHeader(stdout,"psMetadata", "Test J - Attempt to use null file with itemPrint", + "Null file descriptor not allowed", 0); + psMetadataItemPrint(NULL, "Item value: %ld", item2); + printFooter(stdout, "psMetadata", "Test J - Attempt to use null file with itemPrint", true); + + + // Test K - Attempt to use null format with itemPrint + printNegativeTestHeader(stdout,"psMetadata", "Test K - Attempt to use null format with itemPrint", + "Null format not allowed", 0); + psMetadataItemPrint(fd, NULL, item2); + printFooter(stdout, "psMetadata", "Test K - Attempt to use null format with itemPrint", true); + + + // Test L - Attempt to use null item with itemPrint + printNegativeTestHeader(stdout,"psMetadata", "Test L - Attempt to use null item with itemPrint", + "Null metadata not allowed", 0); + psMetadataItemPrint(fd, "Item value: %ld", NULL); + printFooter(stdout, "psMetadata", "Test L - Attempt to use null item with itemPrint", true); + + + // Test M - Free psMetadata + printPositiveTestHeader(stdout, "psMetadata", "Test M - Free psMetadata"); + psFree(metadata); + psFree(item1); + psFree(item2); + psFree(item3); + psFree(item4); + psFree(item5); + psFree(item6); + psFree(item7); + // psFree(item8); + if ( psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { + psError(PS_ERR_UNKNOWN, true,"Memory leaks detected."); + return 50; + } + psMemCheckCorruption(0); + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + return 51; + } + printFooter(stdout, "psMetadata", "Test M - Free psMetadata", true); + + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_06.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_06.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_06.c (revision 12167) @@ -0,0 +1,166 @@ + +/** @file tst_psMetadata_06.c +* +* @brief Test driver for psMetadata functions +* +* This test driver contains the following tests for psMetadata: +* Test A - Allocate metadata and items +* Test B - Add leaf node on top of existing leaf node +* Test C - Add leaf node to existing folder node +* Test D - Add folder node on top of existing leaf node +* Test E - Free psMetadata +* +* @author Ross Harman, MHPCC +* +* @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-09-26 21:13:33 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include +#include "pslib_strict.h" +#include "psTest.h" + +static void printMetadataItem(psMetadataItem *metadataItem) +{ + printf("Key Name: %8s ", metadataItem->name); + printf("Key mdType: 0x%08x ", metadataItem->type); + + switch (metadataItem->type) { + case PS_DATA_METADATA_MULTI: + printf("Key Value: %17c", ' '); + break; + case PS_DATA_LIST: + printf("Key Value: %15s ", "psList"); + break; + case PS_DATA_BOOL: + printf("Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_STRING: + printf("Key Value: %15s ", (char*)metadataItem->data.V); + break; + default: + printf("Bad type: %d ", metadataItem->type); + } + printf("Key Comment: %s\n", metadataItem->comment); +} + + +psS32 main( psS32 argc, char* argv[] ) +{ + psMetadataItem *item1a = NULL; + psMetadataItem *item1b = NULL; + psMetadataItem *item1c = NULL; + psMetadataItem *item2a = NULL; + psMetadataItem *item2b = NULL; + psMetadata *metadata = NULL; + + + // Test A - Allocate metadata and items + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate metadata and items"); + item1a = psMetadataItemAlloc("myItem1", PS_DATA_BOOL, "I am a boolean", true); + item1b = psMetadataItemAlloc("myItem1", PS_DATA_S32, "I am a signed integer", 111); + item1c = psMetadataItemAlloc("myItem1", PS_DATA_S32, "I am a signed integer", 222); + item2a = psMetadataItemAlloc("myItem2", PS_DATA_S32, "I am a signed integer", 333); + item2b = psMetadataItemAlloc("myItem2", PS_DATA_LIST, "I am a list", NULL); + metadata = psMetadataAlloc(); + printMetadataItem(item1a); + printMetadataItem(item1b); + printMetadataItem(item1c); + printMetadataItem(item2a); + printMetadataItem(item2b); + printFooter(stdout, "psMetadata", "Test A - Allocate metadata and items", true); + + + // Test B - Add leaf node on top of existing leaf node + printPositiveTestHeader(stdout, "psMetadata", "Test B - replace an item in the metadata"); + if(!psMetadataAddItem(metadata, item1a, PS_LIST_HEAD, PS_META_DEFAULT)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem returned false for adding a node top."); + return 20; + } + psMetadataItem* tempItem = psMetadataLookup(metadata, item1a->name); + if (tempItem != item1a) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem didn't add the metadata entry."); + return 20; + } + + if (!psMetadataAddItem(metadata, item1b, PS_LIST_HEAD, PS_META_REPLACE)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem returned false for adding a node top."); + return 21; + } + + tempItem = psMetadataLookup(metadata, item1a->name); + if (tempItem != item1b) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem didn't replace the metadata entry."); + return 21; + } + + printFooter(stdout, "psMetadata", "Test B - replace an item in the metadata", true); + + + // Test C - Add leaf node to existing folder node + printPositiveTestHeader(stdout, "psMetadata", "Test C - add duplicate-key metadata item"); + if (!psMetadataAddItem(metadata, item1c, PS_LIST_HEAD, PS_META_DUPLICATE_OK)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem return false for adding a not to existing node."); + return 22; + } + + tempItem = psMetadataLookup(metadata, item1a->name); + if (tempItem == NULL || tempItem->type != PS_DATA_METADATA_MULTI) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem didn't add additional metadata entry of same key."); + return 22; + } + printFooter(stdout, "psMetadata", "Test C - add duplicate-key metadata item", true); + + + // Test D - Add folder node on top of existing leaf node + printPositiveTestHeader(stdout, "psMetadata", "Test D - Add folder node on top of existing leaf node"); + if (!psMetadataAddItem(metadata, item2a, PS_LIST_HEAD, PS_META_DEFAULT)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem returned false for adding a node to existing leaf node."); + return 23; + } + if (!psMetadataAddItem(metadata, item2b, PS_LIST_HEAD, PS_META_DUPLICATE_OK)) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem returned false for adding a nod to existing leaf node."); + return 24; + } + printFooter(stdout, "psMetadata", "Test D - Add folder node on top of existing leaf node", true); + tempItem = psMetadataLookup(metadata, item1a->name); + if (tempItem == NULL || tempItem->type != PS_DATA_METADATA_MULTI) { + psError(PS_ERR_UNKNOWN, true,"psMetadataAddItem didn't add additional metadata entry of same key."); + return 24; + } + + + // Test E - Free psMetadata + printPositiveTestHeader(stdout, "psMetadata", "Test E - Free psMetadata"); + psFree(item1a); + psFree(item1b); + psFree(item1c); + psFree(item2a); + psFree(item2b); + psFree(metadata); + if ( psMemCheckLeaks(0, NULL, stdout, false) != 0 ) { + psError(PS_ERR_UNKNOWN, true,"Memory leaks detected."); + return 25; + } + psMemCheckCorruption(0); + psS32 nBad = psMemCheckCorruption(0); + if(nBad) { + printf("ERROR: Found %d bad memory blocks\n", nBad); + } + printFooter(stdout, "psMetadata", "Test E - Free psMetadata", true); + + + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psMetadata_07.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psMetadata_07.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psMetadata_07.c (revision 12167) @@ -0,0 +1,362 @@ +/** @file tst_psMetadata_07.c +* +* @brief Test driver for psMetadataIterator functions +* +* This test driver contains the following tests for psMetadata: +* Test A - Allocate a psMetadataIterator +* Test B - Set a psMetadataIterator +* Test C - Get and Increment a psMetadataIterator +* Test D - Get and Decrement a psMetadataIterator +* Test E - psMetadataConfigWrite (also tests psMetadataConfigFormat) +* Test F - psMetadataRemoveKey, RemoveIndex +* Test G - psMetadataAddPtr, psMetadataItemAllocPtr +* Test H - psMetadataCopy +* Test I - psArgument Functions +* +* @author David Robbins, MHPCC +* +* @version $Revision: 1.22 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-05-03 01:10:09 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ +#include "config.h" +#include "pslib_strict.h" +#include "psTest.h" +//#include "psMetadata.h" + +static psS32 testMetaIter(void); +static psS32 testMetaWrite(void); +static psS32 testMetaRemove(void); +static psS32 testMetaAddPtr(void); +static psS32 testMetaCopy(void); + +testDescription tests[] = { + {testMetaIter, 1, "Test psMetadataIterator fxns", 0, false}, + {testMetaWrite, 2, "Test psMetadataConfigWrite", 0, false}, + {testMetaRemove, 3, "Test psMetadataRemoveKey/Index", 0, false}, + {testMetaAddPtr, 4, "Test psMetadataAddPtr", 0, false}, + {testMetaCopy, 5, "Test psMetadataCopy", 0, false}, + {NULL} + }; + +static psMetadata *setupMeta(void); + +static psMetadata *setupMeta(void) +{ + psMetadata *md = NULL; + psVector *vec = NULL; + psMetadata *newMD = NULL; + psTime *time; + int i = 0; + md = psMetadataAlloc(); + newMD = psMetadataAlloc(); + vec = psVectorAlloc(60, PS_DATA_S32); + time = psTimeAlloc(PS_TIME_TAI); + for (i = 0; i < 5; i++) { + vec->data.S32[i] = i+1; + } + vec->n = 5; + time->sec = 1000; + time->nsec = 25; + time->leapsecond = true; + psMetadataAddBool(md, PS_LIST_TAIL, "item1", 0, "I am a boolean", true); + psMetadataAddS32(md, PS_LIST_TAIL, "item2", 0, "", 55); + psMetadataAddF32(md, PS_LIST_TAIL, "item3", 0, NULL, 3.14); + psMetadataAddF64(md, PS_LIST_TAIL, "item4", 0, "", 6.28); + psMetadataAddStr(md, PS_LIST_TAIL, "item5", 0, "I am a string", "GNIRTS"); + psMetadataAddVector(md, PS_LIST_TAIL, "vector6", 0, "I am a vector", vec); + psMetadataAddTime(md, PS_LIST_TAIL, "time01", 0, "I am time", time); + + psMetadataAddS32(newMD, PS_LIST_TAIL, "ITEM01", 0, NULL, 666); + psMetadata *newestMD = NULL; + newestMD = psMetadataAlloc(); + psMetadataAddVector(newestMD, PS_LIST_TAIL, "VECTORNEW", 0, "Newest VECTOR", vec); + psMetadataAddStr(newestMD, PS_LIST_TAIL, "cell", 0, "I am a p-Star", "pStArRs"); + psMetadataAddMetadata(newMD, PS_LIST_TAIL, "META NEW", 0, "I AM Newest METADATA", newestMD); + psMetadataAddF32(newMD, PS_LIST_TAIL, "ITEM02", 0, "I AM FLOAT", 666.6); + psMetadataAddF64(newMD, PS_LIST_TAIL, "ITEM03", 0, "I AM DOUBLE", 666.666); + + psMetadataAddMetadata(md, PS_LIST_TAIL, "metadata7", 0, "I am a metadata", newMD); + psFree(time); + psFree(newestMD); + psFree(vec); + psFree(newMD); + return md; +} + +int main(int argc, char* argv[]) +{ + psLogSetLevel( PS_LOG_INFO ); + if( !runTestSuite(stderr,"psMetadata_07",tests,argc,argv)) { + return 1; + } + return 0; +} + +//Set a psMetadataIterator // +static psS32 testMetaIter(void) +{ + psMetadata *metadata = NULL; + metadata = setupMeta(); + psMetadataIterator *iter = NULL; + psMetadataItem *item1 = NULL; + psMetadataItem *item2 = NULL; + psMetadataItem *item3 = NULL; + printPositiveTestHeader(stdout, "psMetadata", "Test A - Allocate psMetadataIterator"); + iter = psMetadataIteratorAlloc(metadata, PS_LIST_HEAD, NULL); + if (iter == NULL) { + fprintf(stderr, "Failed test point - Allocate a psMetadataIterator. Iterator NULL. \n"); + } + printFooter(stdout, "psMetadata", "Test A - Allocate psMetadataIterator", true); + printPositiveTestHeader(stdout, "psMetadata", "Test B - Set psMetadataIterator"); + psMetadataIteratorSet(iter, 2); + item1 = psMetadataGetAndIncrement(iter); + if ( !strncmp(item1->name, "item2", 20) ) { + fprintf(stderr, "Failed test point - IteratorSet - Item names don't match. \n"); + } + printFooter(stdout, "psMetadata", "Test B - Set psMetadataIterator", true); + printPositiveTestHeader(stdout, "psMetadata", "Test C - Get and Increment Iterator"); + item2 = psMetadataGetAndDecrement(iter); + if ( !strncmp(item2->name, "item3", 20) ) { + fprintf(stderr, "Failed test point - GetAndIncrement - Item names don't match. \n"); + } + printFooter(stdout, "psMetadata", "Test C - Get and Increment Iterator", true); + printPositiveTestHeader(stdout, "psMetadata", "Test D - Get and Decrement Iterator"); + item3 = psMetadataGetAndDecrement(iter); + if ( !strncmp(item3->name, "item2", 20) ) { + fprintf(stderr, "Failed test point - GetAndDecrement - Item names don't match. \n"); + } + printFooter(stdout, "psMetadata", "Test D - Get and Decrement Iterator", true); + psFree(iter); + psFree(metadata); + return 0; +} + +static psS32 testMetaWrite(void) +{ + psMetadata *newMD = NULL; + //Return false for NULL input metadata + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psMetadataConfigWrite(newMD, "mdcfgwrt.out")) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataConfigWrite failed to return false for NULL input metadata.\n"); + return 1; + } + newMD = setupMeta(); + //Return false for NULL input filename + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psMetadataConfigWrite(newMD, NULL)) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataConfigWrite failed to return false for NULL input filename.\n"); + return 2; + } + //Return false for bad input filename + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psMetadataConfigWrite(newMD, "temp")) { + psError(PS_ERR_BAD_PARAMETER_NULL, false, + "psMetadataConfigWrite failed to return false for bad input filename.\n"); + return 3; + } + //Return true for valid inputs + if ( !psMetadataConfigWrite(newMD, "mdcfgwrt.out") ) { + fprintf(stderr, "Failed test point E - Failed to write metadata to file. \n"); + return 4; + } + + //Make sure the output file matches the verified file output. + FILE *verified; + FILE *output; + verified = fopen("mdcfgwrt.verified", "r"); + output = fopen("mdcfgwrt.out", "r"); + char buffer1[100]; + char buffer2[100]; + while ( fscanf(verified, "%s", buffer1) != EOF ) { + if (fscanf(output, "%s", buffer2) == EOF) { + psError(PS_ERR_BAD_PARAMETER_SIZE, false, + "Output file is smaller than the expected output file.\n"); + return 5; + } + if (strncmp(buffer1, buffer2, 100) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Output file contents do not match the expected output.\n"); + return 6; + } + } + if (fscanf(output, "%s", buffer2) != EOF) { + psError(PS_ERR_BAD_PARAMETER_SIZE, false, + "Output file is larger than the expected output file.\n"); + return 7; + } + fclose(verified); + fclose(output); + + psFree(newMD); + return 0; +} + +psS32 testMetaRemove(void) +{ + psMetadata *md = NULL; + md = setupMeta(); + if ( !psMetadataRemoveKey(md, "item1") ) { + fprintf(stderr, "Failed to remove item1 from psMetadata.\n"); + return 1; + } + if ( !psMetadataRemoveIndex(md, PS_LIST_HEAD) ) { + fprintf(stderr, "Failed to remove item2 from psMetadata.\n"); + return 2; + } + psFree(md); + return 0; +} + +psS32 testMetaAddPtr(void) +{ + bool status; + psVector *vecptr = NULL; + psVector *vecptr2 = NULL; + vecptr = psVectorAlloc(5, PS_TYPE_S32); + vecptr->data.S32[0] = 666; + psMetadata *md = NULL; + md = psMetadataAlloc(); + psMetadataItem *item = NULL; + psMetadataItem *item2 = NULL; + item = psMetadataItemAllocPtr("itemptr", PS_DATA_STRING, "", "Devil String"); + status = psMetadataAddPtr(md, PS_LIST_HEAD, "vecptr", PS_DATA_VECTOR, + "this is a vector comment", vecptr); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to add psPtr (vector) to metadata.\n"); + return 1; + } + status = false; + vecptr2 = (psVector*)psMetadataLookupPtr(&status, md, "vecptr"); + if (!status) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to retrieve psPtr (vector) from metadata.\n"); + return 2; + } + if (vecptr2->data.S32[0] != 666) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Failed to retrieve correct psPtr (vector) from metadata.\n"); + return 3; + } + status = false; + if (item == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to Alloc psPtr (string) metadata item .\n"); + return 5; + } + if ( !psMetadataAddItem(md, item, PS_LIST_TAIL, 0) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to add psPtr (string) metadata item to metadata.\n"); + return 6; + } + item2 = psMetadataGet(md, PS_LIST_TAIL); + if (item2 == NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to retrieve psPtr (string) metadata item .\n"); + return 7; + } + if ( strncmp((char*)item2->data.V, "Devil String", 20) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Unable to retrieve correct psPtr (string) metadata item .\n"); + printf("\n string = %s \n", (char*)item2->data.V); + return 8; + } + + psMetadata *strtest = psMetadataAlloc(); + //should return false for NULL input string + // psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if ( !psMetadataAddStr(strtest, PS_LIST_TAIL, "bar", 0, "baz", NULL) ) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, "strtest failed for NULL.\n"); + return 9; + } + psFree(strtest); + + psFree(item); + psFree(vecptr); + psFree(md); + return 0; + +} + +psS32 testMetaCopy(void) +{ + psMetadata *test = NULL; + psMetadata *empty = NULL; + psMetadata *md = setupMeta(); + + //Return NULL for NULL input Metadata + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + test = psMetadataCopy(test, empty); + if (test != NULL) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataCopy failed to return NULL for NULL input metadata.\n"); + psFree(md); + return 1; + } + + //Return a copy in of md in test + test = psMetadataCopy(NULL, md); + //Check if contents are the same + psMetadataItem *testItem = NULL; + psMetadataItem *mdItem = NULL; + psMetadataIterator *testIterator = NULL; + psMetadataIterator *mdIterator = NULL; + testIterator = psMetadataIteratorAlloc(test, PS_LIST_HEAD, NULL); + mdIterator = psMetadataIteratorAlloc(md, PS_LIST_HEAD, NULL); + testItem = psMetadataGetAndIncrement(testIterator); + mdItem = psMetadataGetAndIncrement(mdIterator); + while (testItem != NULL || mdItem != NULL ) { + testItem = psMetadataGetAndIncrement(testIterator); + mdItem = psMetadataGetAndIncrement(mdIterator); + } + + if (!psMetadataConfigWrite(md, "MDCopy.in") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataConfigWrite failed to output original metadata contents.\n"); + return 3; + } + if (!psMetadataConfigWrite(test, "MDCopy.out") ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psMetadataConfigWrite failed to output copied metadata contents.\n"); + return 4; + } + FILE *verified; + FILE *output; + verified = fopen("MDCopy.in", "r"); + output = fopen("MDCopy.out", "r"); + char buffer1[100]; + char buffer2[100]; + while ( fscanf(verified, "%s", buffer1) != EOF ) { + if (fscanf(output, "%s", buffer2) == EOF) { + psError(PS_ERR_BAD_PARAMETER_SIZE, false, + "Copied metadata is smaller than the original.\n"); + return 5; + } + if (strncmp(buffer1, buffer2, 100) ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "Copied metadata contents do not match original metadata contents.\n"); + return 6; + } + } + if (fscanf(output, "%s", buffer2) != EOF) { + psError(PS_ERR_BAD_PARAMETER_SIZE, false, + "Copied metadata is larger than the original.\n"); + return 7; + } + fclose(verified); + fclose(output); + + + psFree(testItem); + psFree(mdItem); + psFree(testIterator); + psFree(mdIterator); + psFree(test); + psFree(md); + return 0; +} Index: /branches/rel-1-1/psLib/test/types/tst_psPixels.c =================================================================== --- /branches/rel-1-1/psLib/test/types/tst_psPixels.c (revision 12167) +++ /branches/rel-1-1/psLib/test/types/tst_psPixels.c (revision 12167) @@ -0,0 +1,602 @@ +/** @file tst_psPixels.c + * + * @brief Contains the tests for psPixels.[ch] + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.5 $ + * $Name: not supported by cvs2svn $ + * @date $Date: 2006-04-01 02:43:57 $ + * + * Copyright 2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "psTest.h" +#include "pslib_strict.h" + +static psS32 testPixelsAlloc(void); +static psS32 testPixelsRealloc(void); +static psS32 testPixelsCopy(void); +static int testPixelsToMask(void); +static int testPixelsFromMask(void); +static int testPixelsConcatenate(void); +static psS32 testPixelsGetSet(void); +static psS32 testPixelsLength( void ); + +testDescription tests[] = { + {testPixelsAlloc,860,"psPixelsAlloc",0,false}, + {testPixelsRealloc,862,"psPixelsRealloc",0,false}, + {testPixelsCopy,863,"psPixelsCopy",0,false}, + {testPixelsToMask,864,"psPixelsToMask",0,false}, + {testPixelsFromMask,865,"psPixelsFromMask",0,false}, + {testPixelsConcatenate,866,"psPixelsConcatenate",0,false}, + {testPixelsGetSet,867,"psPixelsGet/Set",0,false}, + {testPixelsLength,666,"psPixelsLength",0,false}, + {NULL} + }; + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + + if ( ! runTestSuite(stderr,"psPixels",tests,argc,argv) ) { + psError(PS_ERR_UNKNOWN,true,"One or more tests failed"); + return 1; + } + return 0; +} + +psS32 testPixelsAlloc(void) +{ + + psPixels* p0 = psPixelsAlloc(0); + + if (p0 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to allocate a zero-sized psPixels"); + return 1; + } + if (p0->data != NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set data to NULL for a zero-sized psPixels"); + return 2; + } + if (p0->n != p0->nalloc) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set n = 0"); + return 3; + } + if (p0->nalloc != 0) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set nalloc = 0"); + return 4; + } + + psPixels* p1 = psPixelsAlloc(1); + + if (p1 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to allocate a one-sized psPixels"); + return 11; + } + if (p1->data == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to allocate data for a one-sized psPixels"); + return 12; + } + p1->data[0].x = 1; + p1->data[0].y = 2; + p1->n++; + if (p1->n != p1->nalloc) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set n = %ld", p1->nalloc); + return 13; + } + if (p1->nalloc != 1) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set nalloc = 1 (%ld)", + p1->nalloc); + return 14; + } + + psPixels* p2 = psPixelsAlloc(10); + + if (p2 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to allocate a one-sized psPixels"); + return 11; + } + if (p2->data == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to allocate data for a one-sized psPixels"); + return 12; + } + for (int i = 0; i < 10; i++) { + p2->data[i].x = i; + p2->data[i].y = 100+i; + p2->n++; + } + + if (p2->n != p2->nalloc) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set n = %ld", p2->nalloc); + return 13; + } + if (p2->nalloc != 10) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsAlloc failed to set nalloc = 1 (%ld)", + p2->nalloc); + return 14; + } + + + psFree(p2); + psFree(p1); + psFree(p0); + + return 0; +} + +psS32 testPixelsRealloc(void) +{ + + // first, tests that reallocing a NULL just allocates + psPixels* p0 = psPixelsRealloc(NULL,10); + p0->n = 10; + + if (p0 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to allocate a zero-sized psPixels"); + return 1; + } + if (p0->data == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set data to NULL for a zero-sized psPixels"); + return 2; + } + if (p0->n != p0->nalloc) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set n = 0"); + return 3; + } + if (p0->nalloc != 10) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set nalloc = 10"); + return 4; + } + for (int i = 0; i < 10; i++) { + p0->data[i].x = i; + p0->data[i].y = 100+i; + } + p0->n = 10; + + psPixels* p1 = psPixelsRealloc(p0, 20); + // p1->n = 20; + + if (p1 != p0) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to return a resized input psPixels"); + return 11; + } + if (p1->data == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set data to non-NULL"); + return 12; + } + if (p1->n != 10) { + psError(PS_ERR_UNKNOWN, true, + "resizing up didn't preserve the size"); + return 13; + } + if (p1->nalloc != 20) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set nalloc = 0"); + return 14; + } + for (int i = 0; i < 10; i++) { + if (p0->data[i].x != i || p0->data[i].y != 100+i) { + psError(PS_ERR_UNKNOWN, true, + "The value of pixel %d was not preserved (%f,%f) vs (%d,%d).", + i, p0->data[i].x, p0->data[i].y, i, 100+i); + return 15; + } + } + for (int i = 10; i < 20; i++) { + p1->data[i].x = i; + p1->data[i].y = 100+i; + } + p1->n = 20; + + + psPixels* p2 = psPixelsRealloc(p1,5); + p2->n = 5; + if (p2 != p1) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc didn't return input psPixels."); + return 21; + } + if (p2->data == NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to allocate data"); + return 22; + } + + if (p2->n != 5) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set n=nalloc after shrinking"); + return 23; + } + if (p2->nalloc != 5) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set nalloc properly"); + return 24; + } + + psPixels* p3 = psPixelsRealloc(p2,0); + + if (p3 != p2) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc didn't return input psPixels."); + return 31; + } + if (p3->data != NULL) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to deallocate data when size=0"); + return 32; + } + + if (p3->n != 0) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set n=nalloc after shrinking"); + return 33; + } + if (p3->nalloc != 0) { + psError(PS_ERR_UNKNOWN, true, + "psPixelsRealloc failed to set nalloc properly"); + return 34; + } + + psFree(p3); + + return 0; +} + +psS32 testPixelsCopy(void) +{ + psPixels* in1 = psPixelsAlloc(10); + + for (int i = 0; i < 10; i++) { + in1->data[i].x = i; + in1->data[i].y = 100+i; + } + in1->n = 10; + + psPixels* out1 = psPixelsCopy(NULL, in1); + if (out1 == in1) { + psError(PS_ERR_UNKNOWN, true, + "output == input?"); + return 1; + } + if (out1 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "output == NULL?"); + return 2; + } + + if (out1->n != in1->n) { + psError(PS_ERR_UNKNOWN, true, + "out->n != in->n"); + return 3; + } + for (long i = 0; i < out1->n; i++) { + if (out1->data[i].x != in1->data[i].x || out1->data[i].y != in1->data[i].y) { + psError(PS_ERR_UNKNOWN, true, + "failed to copy the values correctly at index %ld", i); + return 4; + } + } + + // now test what happens when copying a 0-length list. + psPixels* in2 = psPixelsAlloc(0); + psPixels* out2 = psPixelsCopy(out1, in2); + if (out2 != out1) { + psError(PS_ERR_UNKNOWN, true, + "failed to recycle."); + return 10; + } + if (out2->n != in2->n) { + psError(PS_ERR_UNKNOWN, true, + "failed to set size when copying 0-length pixel list."); + return 11; + } + + // Attempt to copy from NULL input + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL input"); + out2 = psPixelsCopy(out2,NULL); + if (out2 != NULL) { + psError(PS_ERR_UNKNOWN, true, + "Copying a NULL should create a NULL."); + return 20; + } + + psFree(in1); + psFree(in2); + + return 0; +} + +int testPixelsToMask(void) +{ + // create a pixel list for + psPixels* pixels = psPixelsAlloc(10); + for (int i = 0; i < 10; i++) { + pixels->data[i].x = i; + pixels->data[i].y = i; + } + pixels->n = 10; + + psImage* mask = psPixelsToMask(NULL,pixels, psRegionSet(0,10,0,10), 1); + + if (mask == NULL) { + psError(PS_ERR_UNKNOWN, true, + "Resulting mask was null."); + return 1; + } + if (mask->type.type != PS_TYPE_MASK) { + psError(PS_ERR_UNKNOWN, true, + "mask type was not PS_TYPE_MASK."); + return 2; + } + + for (int row=0;row<10;row++) { + psMaskType* rowData = mask->data.PS_TYPE_MASK_DATA[row]; + for (int col=0;col<10;col++) { + if ( (col==row && rowData[col] != 1) || + (col!=row && rowData[col] != 0) ) { + psError(PS_ERR_UNKNOWN,true, + "Mask has unexpected value, %d, at (%d,%d)", + rowData[col], col, row); + return 10; + } + } + } + + // test when input psPixels is NULL. + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for NULL pixels"); + mask = psPixelsToMask(mask, NULL, psRegionSet(0,10,0,10), 1); + if (mask != NULL) { + psError(PS_ERR_UNKNOWN, true, + "Resulting mask was not null though input psPixels was NULL."); + return 20; + } + + + // Test for invalid region + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid range"); + mask = psPixelsToMask(mask,pixels,psRegionSet(10,0,10,0),1); + if(mask != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL for invalid range"); + return 21; + } + // Test for invalid region + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error for invalid range"); + mask = psPixelsToMask(mask,pixels,psRegionSet(0,-1,0,10),1); + if(mask != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect non-NULL for invalid range"); + return 22; + } + + psFree(mask); + psFree(pixels); + + return 0; +} + +int testPixelsFromMask(void) +{ + const int numRows = 10; + const int numCols = 20; + psImage* mask = psImageAlloc(numCols,numRows,PS_TYPE_MASK); + for (int row=0;rowdata.PS_TYPE_MASK_DATA[row][col] = (row*2 == col) ? 1 : 0; + } + } + + psPixels* pixels = psPixelsFromMask(NULL, mask, 1); + + if (pixels == NULL) { + psError(PS_ERR_UNKNOWN, false, + "resulting psPixels was NULL?"); + return 1; + } + + if (pixels->n != numRows) { + psError(PS_ERR_UNKNOWN, false, + "wrong number of pixels in list. Got %ld, should be %d.", + pixels->n, numRows); + return 2; + } + + for (long i = 0; i < pixels->n; i++) { + if (mask->data.PS_TYPE_MASK_DATA[(int)pixels->data[i].y][(int)pixels->data[i].x] != 1) { + psError(PS_ERR_UNKNOWN, false, + "Item in psPixels list (%f,%f) didn't coorespond to a masked value in image", + pixels->data[i].x, pixels->data[i].y); + return 3; + } + } + + // Attempt to create pixels from NULL mask + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error for NULL mask"); + pixels = psPixelsFromMask(pixels, NULL, 1); + + if (pixels != NULL) { + psError(PS_ERR_UNKNOWN, false, + "given a NULL image, got a non-NULL mask?"); + return 4; + } + + psFree(mask); + + return 0; +} + +int testPixelsConcatenate(void) +{ + // create a pixel list for + psPixels* pixels = psPixelsAlloc(10); + psPixels* pixels1 = psPixelsAlloc(10); + for (int i = 0; i < 10; i++) { + pixels->data[i].x = i; + pixels->data[i].y = i; + if (i%2) { + pixels1->data[i].x = -i; + } else { + pixels1->data[i].x = i; + } + pixels1->data[i].y = i; + } + pixels->n = 10; + pixels1->n = 10; + p_psPixelsPrint(stdout, pixels, "pixels"); + p_psPixelsPrint(stdout, pixels1, "pixels1"); + + psPixels* pixels2 = psPixelsConcatenate(NULL, pixels); + p_psPixelsPrint(stdout, pixels2, "pixels2"); + if (pixels2 == NULL) { + psError(PS_ERR_UNKNOWN, true, + "pixels2 == NULL?"); + return 1; + } + if (pixels == pixels2) { + psError(PS_ERR_UNKNOWN, true, + "pixels == pixels2? Should have made a copy."); + return 2; + } + if (pixels2->n != pixels->n) { + psError(PS_ERR_UNKNOWN, true, + "pixels2->n != pixels->n"); + return 3; + } + for (long i = 0; i < pixels2->n; i++) { + if (pixels2->data[i].x != pixels->data[i].x || pixels2->data[i].y != pixels->data[i].y) { + psError(PS_ERR_UNKNOWN, true, + "failed to copy the values correctly at index %ld", i); + return 4; + } + } + + // add pixels that are half unique. + psPixels* pixels3 = psPixelsConcatenate(pixels2, pixels1); + p_psPixelsPrint(stdout, pixels3, "pixels3"); + if (pixels3 != pixels2) { + psError(PS_ERR_UNKNOWN, true, + "return expected to be the out parameter."); + return 10; + } + if (pixels3->n != 15) { + psError(PS_ERR_UNKNOWN, true, + "pixels3->n != 15, == %ld", pixels3->n); + return 11; + } + + // Attempt to concatenate with NULL pixels + psLogMsg(__func__,PS_LOG_INFO,"Following should generate an error message for NULL pixels"); + if(psPixelsConcatenate(pixels2,NULL) != NULL) { + psError(PS_ERR_UNKNOWN,true,"Did not expect return to be non-NULL for NULL input pixels"); + return 12; + } + + psFree(pixels3); + psFree(pixels1); + psFree(pixels); + + return 0; +} + +psS32 testPixelsGetSet(void) +{ + psPixels *in = psPixelsAlloc(5); + in->n = 0; + psPixelCoord value; + psPixelCoord out; + value.x = 3; + value.y = 13; + if ( psPixelsSet(in, 2, value) ) { + psError(PS_ERR_LOCATION_INVALID, true, "psPixelSet set to Invalid location\n"); + return 1; + } + if ( !psPixelsSet(in, 0, value) ) { + psError(PS_ERR_UNKNOWN, true, "psPixelsSet failed to set pixels at location 0\n"); + return 2; + } + if ( !psPixelsSet(in, 1, value) ) { + psError(PS_ERR_UNKNOWN, true, "psPixelsSet failed to set pixels at location 0\n"); + return 3; + } + out = psPixelsGet(in, 1); + if ( out.x != 3 || out.y != 13 ) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPixelsGet return incorrect values %f,%f", + out.x, out.y); + return 4; + } + value.x = 1; + value.y = 2; + if ( !psPixelsSet(in, 0, value) ) { + psError(PS_ERR_UNKNOWN, true, "psPixelsSet failed to set pixels at location 0\n"); + return 5; + } + out = psPixelsGet(in, 0); + if (out.x != 1 || out.y != 2) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "psPixelsGet return incorrect values %f,%f", + out.x, out.y); + return 6; + } + psFree(in); + return 0; +} + +psS32 testPixelsLength( void ) +{ + psPixels *pixels = psPixelsAlloc(5); + + if (psPixelsLength(pixels) != 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPixelsLength failed to return the correct length of pixels.\n"); + return 1; + } + pixels->n = 5; + if (psPixelsLength(pixels) != 5) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPixelsLength failed to return the correct length of pixels.\n"); + return 2; + } + pixels->n++; + if (psPixelsLength(pixels) != 6) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPixelsLength failed to return the correct length of pixels.\n"); + return 3; + } + psFree(pixels); + + psPixels *emptyPixels = NULL; + psVector *vector = psVectorAlloc(5, PS_TYPE_F32); + + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psPixelsLength(emptyPixels) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPixelsLength failed to return -1 for a NULL input pixels.\n"); + return 4; + } + psLogMsg(__func__,PS_LOG_INFO,"Following should generate error message"); + if (psPixelsLength((psPixels*)vector) != -1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, + "psPixelsLength failed to return -1 for an invalid input pixels.\n"); + return 5; + } + psFree(vector); + + return 0; +} + Index: /branches/rel-1-1/psLib/test/xml/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/test/xml/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/.cvsignore (revision 12167) @@ -0,0 +1,15 @@ +temp +.deps +.libs +Makefile +Makefile.in +psTest.xml +psTest2.xml +psTest3.xml +psTest4.xml +psTest5.xml +tst_psXML +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psLib/test/xml/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/test/xml/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/Makefile.am (revision 12167) @@ -0,0 +1,21 @@ +AM_CPPFLAGS = $(SRCINC) -I$(top_srcdir)/test/tap/src $(PSLIB_CFLAGS) +AM_LDFLAGS = \ + $(top_builddir)/src/libpslib.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(PSLIB_LIBS) + +TEST_PROGS = + +if BUILD_TESTS +bin_PROGRAMS = $(TEST_PROGS) +TESTS = $(TEST_PROGS) +else +check_PROGRAMS = $(TEST_PROGS) +endif + +EXTRA_DIST = psTime.xml psTime2.xml psTime3.xml psTime4.xml + +CLEANFILES = $(check_DATA) temp/* psTest5.xml psTest2.xml psTest.xml psTest3.xml psTest4.xml \ + core core.* *~ *.bb *.bbg *.da gmon.out + +test: check Index: /branches/rel-1-1/psLib/test/xml/psTime.xml =================================================================== --- /branches/rel-1-1/psLib/test/xml/psTime.xml (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/psTime.xml (revision 12167) @@ -0,0 +1,23 @@ + + + + + + + + + + + + + + Index: /branches/rel-1-1/psLib/test/xml/psTime2.xml =================================================================== --- /branches/rel-1-1/psLib/test/xml/psTime2.xml (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/psTime2.xml (revision 12167) @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + Index: /branches/rel-1-1/psLib/test/xml/psTime3.xml =================================================================== --- /branches/rel-1-1/psLib/test/xml/psTime3.xml (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/psTime3.xml (revision 12167) @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + Index: /branches/rel-1-1/psLib/test/xml/psTime4.xml =================================================================== --- /branches/rel-1-1/psLib/test/xml/psTime4.xml (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/psTime4.xml (revision 12167) @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + Index: /branches/rel-1-1/psLib/test/xml/tap_psXML.c =================================================================== --- /branches/rel-1-1/psLib/test/xml/tap_psXML.c (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/tap_psXML.c (revision 12167) @@ -0,0 +1,317 @@ +/** @file tst_psXML.c +* +* @brief Test driver for psXML functions +* +* This test driver contains the following tests for psXML: +* Test 1 - Parse an XML file +* Test 2 - Parse an XML memory block +* Test 3 - Parse an XML file descriptor +* Test 4 - Convert an XML doc to Metadata +* Test 5 - Convert Metadata to an XML doc +* Test 6 - Write an XML doc to file +* Test 7 - Write an XML doc to memory block +* Test 8 - Write an XML doc to file descriptor +* +* @author Dave Robbins, MHPCC +* +* XXXX: This doesn't even compile +* XXXX: There are no data tests, he simple prints data to STDOUT +* +* @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-01-30 21:32:57 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ +#include +#include +#include +#include "tap.h" +#include "pstap.h" + +//static void writeMetadata(psMetadata* metadata, char* indentStr); + +// XXX: What should SRCDIR be? +#define SRCDIR +const char testFile1[] = SRCDIR "/psTime.xml"; +const char testFile2[] = SRCDIR "/psTime2.xml"; +const char testFile3[] = SRCDIR "/psTime3.xml"; +const char testFile4[] = SRCDIR "/psTime4.xml"; +//static void printMetadata(psMetadata *in); +static void printMetadataItem(psMetadataItem *metadataItem, char *spaces); +static void printMetadata(psMetadata *metadata); +static void printMetadataList(psList *metadataItemList, char* spaces); +static void printMetadataTable(psHash *mdTable); + +static void printMetadata(psMetadata *metadata) +{ + printf("Contents of metadata list:\n"); + printMetadataList(metadata->list, " "); + printf("\nContents of metadata table:\n"); + printMetadataTable(metadata->hash); +} + +static void printMetadataList(psList *metadataItemList, char* spaces) +{ + psMetadataItem *entryChild = NULL; + + psListIterator* iter = psListIteratorAlloc(metadataItemList, PS_LIST_HEAD, true); + + while ( (entryChild=psListGetAndIncrement(iter)) != NULL) { + printMetadataItem(entryChild, spaces); + } + + psFree(iter); +} + +static void printMetadataTable(psHash *mdTable) +{ + psS32 i; + psHashBucket* ptr = NULL; + for(i=0; in; i++) { + ptr = mdTable->buckets[i]; + while (ptr != NULL) { + printMetadataItem(ptr->data, " "); + ptr = ptr->next; + } + } +} + +static void printMetadataItem(psMetadataItem *metadataItem, char *spaces) +{ + int i = 0; + printf("%sKey Name: %25s ", spaces, metadataItem->name); + // printf("Key mdType: %d ", (int)metadataItem->type); + // printf("Key mdType: 0x%08x ", metadataItem->type); + // if ( metadataItem->type == PS_DATA_S32 ) + // printf("Key mdType: S32 " ); + + switch (metadataItem->type) { + case PS_DATA_BOOL: + printf("Key Type: BOOL Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Type: S32 Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Type: F32 Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Type: F64 Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_METADATA: + printf("Key Type: METADATA "); + break; + default: + printf("Key type: psPtr "); + } + if ( !strncmp(metadataItem->name, "psLib.time.Vector.S32", 256) ) { + printf("Key Values: "); + while ( (int)((psVector*)(metadataItem->data.V))->data.S32[i] != 0 ) { + printf("%d ", (int)((psVector*)(metadataItem->data.V))->data.S32[i] ); + i++; + } + printf("\n"); + } else if ( !strncmp(metadataItem->name, "psLib.time.tables.dir", 256) ) { + printf("Key Value: "); + printf("%s", (char*)metadataItem->data.V ); + printf("\n"); + } else if ( !strncmp(metadataItem->name, "psLib.TIME.Magazine", 256) ) { + printf("Key Value: "); + printf("%ld, ", (long)((psTime*)(metadataItem->data.V))->sec ); + printf("%u, ", ((psTime*)(metadataItem->data.V))->nsec ); + if( ((psTime*)(metadataItem->data.V))->leapsecond ) + printf("TRUE "); + else + printf("FALSE "); + if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_UTC ) + printf("PS_TIME_UTC "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_TAI ) + printf("PS_TIME_TAI "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_UT1 ) + printf("PS_TIME_UT1 "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_TT ) + printf("PS_TIME_TT "); + printf("\n"); + } else + printf("Key Comment: %s\n", metadataItem->comment); + + // if(metadataItem->data.V && metadataItem->type==PS_META_MULTI) { + // if(metadataItem->data.V) { + // printMetadataList(metadataItem->data.V, " "); + // } +} + +typedef xmlDocPtr psXMLDoc; +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetFormat("HLNM"); + psLogSetLevel(PS_LOG_INFO); + plan_tests(24); + + //Parses an XML file into memory. Stores as a psXMLDoc// + // testXMLInput00 + { + psMemId id = psMemGetId(); + //psXMLParseFile should return a psXMLDoc* of testFile1// + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + ok(newXML != NULL, "psXMLParseFile() returned non-NULL"); + psFree(newXML); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + //Parses an XML file from memory. Stores as a psXMLDoc// + // testXMLInput01 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + char buffer[2048]; + ok(psXMLDocToMem(newXML, buffer), "psXMLDocToMem() returned non-NULL"); + psXMLDoc *newDoc = NULL; + newDoc = psXMLParseMem(buffer, strlen(buffer) ); + ok(newDoc != NULL, "psXMLParseMem() returned non-NULL"); + psFree(newDoc); + psFree(newXML); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Parses an XML file from a file descriptor. Stores as a psXMLDoc// + // testXMLInput02 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + ok(newXML != NULL, "psXMLParseFile () returned non-NULL"); + int fd = creat("psTest5.xml", 0644); + ok(psXMLDocToFD(newXML, fd), "psXMLDocToFD() returned TRUE"); + + psXMLDoc *newDoc = NULL; + fd = open("psTest5.xml", O_RDWR, 0); + newDoc = psXMLParseFD(fd); + ok(newDoc != NULL, "psXMLParseFD () returned non-NULL"); + close(fd); + psFree(newXML); + psFree(newDoc); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Converts an existing psXMLDoc into psMetadata// + // testXMLConvert00 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + if (metaData == NULL) + { + ok(false, "psXMLDocToMetadata() returned non-NULL"); + } else + { + ok(true, "psXMLDocToMetadata() returned non-NULL"); + printMetadata(metaData); + } + psFree(newXML); + psFree(metaData); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // Converts existing psMetadata into a psXMLDoc// + // testXMLConvert01 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + ok(metaData != NULL, "psXMLDocToMetadata() returned non-NULL"); + psXMLDoc *XML2 = NULL; + XML2 = psMetadataToXMLDoc(metaData); + ok(psXMLDocToFile(XML2, "psTest2.xml"), "psMetadataToXMLDoc() returned TRUE"); + psFree(newXML); + psFree(XML2); + psFree(metaData); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Writes a psXMLDoc to File// + // testXMLOutput00 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + ok(psXMLDocToFile(newXML, "psTest.xml"), "psXMLParseFile() returned TRUE"); + psFree(newXML); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Writes a psXMLDoc to Memory// + // testXMLOutput01 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + char buffer[2048]; + FILE *file; + file = fopen("psTest3.xml", "w"); + ok(psXMLDocToMem(newXML, buffer), "fopen() successful"); + fprintf(file, "%s", buffer); + fclose(file); + psFree(newXML); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + //Writes a psXMLDoc to a file descriptor// + // testXMLOutput02 + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + int fd = creat("psTest4.xml", 0666); + ok(!psXMLDocToFD(newXML, fd), "psXMLDocToFD() returned TRUE"); + close(fd); + psFree(newXML); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // testXMLWrongInput + { + psMemId id = psMemGetId(); + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile2); + ok(newXML != NULL, "psXMLParseFile() returned non-NULL"); + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + ok(metaData != NULL, "psXMLDocToMetadata() returned non-NULL"); + psFree(newXML); + psFree(metaData); + psXMLDoc *newXML2 = NULL; + psMetadata *metaData2 = NULL; + newXML2 = psXMLParseFile(testFile3); + ok(newXML2 != NULL, "psXMLParseFile() returned non-NULL"); + metaData2 = psXMLDocToMetadata(newXML2); + ok(metaData2 != NULL, "psXMLDocToMetadata() returned non-NULL"); + psFree(newXML2); + psFree(metaData2); + psXMLDoc *newXML3 = NULL; + psMetadata *metaData3 = NULL; + newXML3 = psXMLParseFile(testFile4); + ok(newXML3 != NULL, "psXMLParseFile() returned non-NULL"); + metaData3 = psXMLDocToMetadata(newXML3); + ok(metaData3 != NULL, "psXMLDocToMetadata() returned non-NULL"); + psFree(newXML3); + psFree(metaData3); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + /* HERE + */ +} Index: /branches/rel-1-1/psLib/test/xml/tst_psXML.c =================================================================== --- /branches/rel-1-1/psLib/test/xml/tst_psXML.c (revision 12167) +++ /branches/rel-1-1/psLib/test/xml/tst_psXML.c (revision 12167) @@ -0,0 +1,357 @@ +/** @file tst_psXML.c +* +* @brief Test driver for psXML functions +* +* This test driver contains the following tests for psXML: +* Test 1 - Parse an XML file +* Test 2 - Parse an XML memory block +* Test 3 - Parse an XML file descriptor +* Test 4 - Convert an XML doc to Metadata +* Test 5 - Convert Metadata to an XML doc +* Test 6 - Write an XML doc to file +* Test 7 - Write an XML doc to memory block +* Test 8 - Write an XML doc to file descriptor +* +* @author Dave Robbins, MHPCC +* +* @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ +* @date $Date: 2005-10-13 00:50:41 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +* +*/ + +#include +#include "config.h" +#include "pslib_strict.h" +#include "psTest.h" +#include +#include + + +static psS32 testXMLInput00(void); +static psS32 testXMLInput01(void); +static psS32 testXMLInput02(void); +static psS32 testXMLConvert00(void); +static psS32 testXMLConvert01(void); +static psS32 testXMLOutput00(void); +static psS32 testXMLOutput01(void); +static psS32 testXMLOutput02(void); +static psS32 testXMLWrongInput(void); + +testDescription tests[] = { + {testXMLInput00, 0, "Verify XML file parse", 0, false}, + {testXMLInput01, 1, "Verify XML memory parse", 0, false}, + {testXMLInput02, 2, "Verify XML file descriptor parse", 0, false}, + {testXMLConvert00, 3, "Verify XML to Metadata convert", 0, false}, + {testXMLConvert01, 4, "Verify Metadata to XML convert", 0, false}, + {testXMLOutput00, 5, "Verify XML file write", 0, false}, + {testXMLOutput01, 6, "Verify XML memory write", 0, false}, + {testXMLOutput02, 7, "Verify XML file descriptor write", 0, false}, + {testXMLWrongInput, 8, "Verify Incorrect XML Data", 0, false}, + {NULL} + }; + +//static void writeMetadata(psMetadata* metadata, char* indentStr); + +const char testFile1[] = SRCDIR "/psTime.xml"; +const char testFile2[] = SRCDIR "/psTime2.xml"; +const char testFile3[] = SRCDIR "/psTime3.xml"; +const char testFile4[] = SRCDIR "/psTime4.xml"; +//static void printMetadata(psMetadata *in); +static void printMetadataItem(psMetadataItem *metadataItem, char *spaces); +static void printMetadata(psMetadata *metadata); +static void printMetadataList(psList *metadataItemList, char* spaces); +static void printMetadataTable(psHash *mdTable); + +static void printMetadata(psMetadata *metadata) +{ + printf("Contents of metadata list:\n"); + printMetadataList(metadata->list, " "); + printf("\nContents of metadata table:\n"); + printMetadataTable(metadata->hash); +} + +static void printMetadataList(psList *metadataItemList, char* spaces) +{ + psMetadataItem *entryChild = NULL; + + psListIterator* iter = psListIteratorAlloc(metadataItemList, PS_LIST_HEAD, true); + + while ( (entryChild=psListGetAndIncrement(iter)) != NULL) { + printMetadataItem(entryChild, spaces); + } + + psFree(iter); +} + +static void printMetadataTable(psHash *mdTable) +{ + psS32 i; + psHashBucket* ptr = NULL; + for(i=0; in; i++) { + ptr = mdTable->buckets[i]; + while (ptr != NULL) { + printMetadataItem(ptr->data, " "); + ptr = ptr->next; + } + } +} + +static void printMetadataItem(psMetadataItem *metadataItem, char *spaces) +{ + int i = 0; + printf("%sKey Name: %25s ", spaces, metadataItem->name); + // printf("Key mdType: %d ", (int)metadataItem->type); + // printf("Key mdType: 0x%08x ", metadataItem->type); + // if ( metadataItem->type == PS_DATA_S32 ) + // printf("Key mdType: S32 " ); + + switch (metadataItem->type) { + case PS_DATA_BOOL: + printf("Key Type: BOOL Key Value: %15d ", metadataItem->data.B); + break; + case PS_DATA_S32: + printf("Key Type: S32 Key Value: %15d ", metadataItem->data.S32); + break; + case PS_DATA_F32: + printf("Key Type: F32 Key Value: %15.3f ", metadataItem->data.F32); + break; + case PS_DATA_F64: + printf("Key Type: F64 Key Value: %15.3f ", metadataItem->data.F64); + break; + case PS_DATA_METADATA: + printf("Key Type: METADATA "); + break; + default: + printf("Key type: psPtr "); + } + if ( !strncmp(metadataItem->name, "psLib.time.Vector.S32", 256) ) { + printf("Key Values: "); + while ( (int)((psVector*)(metadataItem->data.V))->data.S32[i] != 0 ) { + printf("%d ", (int)((psVector*)(metadataItem->data.V))->data.S32[i] ); + i++; + } + printf("\n"); + } else if ( !strncmp(metadataItem->name, "psLib.time.tables.dir", 256) ) { + printf("Key Value: "); + printf("%s", (char*)metadataItem->data.V ); + printf("\n"); + } else if ( !strncmp(metadataItem->name, "psLib.TIME.Magazine", 256) ) { + printf("Key Value: "); + printf("%ld, ", (long)((psTime*)(metadataItem->data.V))->sec ); + printf("%u, ", ((psTime*)(metadataItem->data.V))->nsec ); + if( ((psTime*)(metadataItem->data.V))->leapsecond ) + printf("TRUE "); + else + printf("FALSE "); + if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_UTC ) + printf("PS_TIME_UTC "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_TAI ) + printf("PS_TIME_TAI "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_UT1 ) + printf("PS_TIME_UT1 "); + else if( ((psTime*)(metadataItem->data.V))->type == PS_TIME_TT ) + printf("PS_TIME_TT "); + printf("\n"); + } else + printf("Key Comment: %s\n", metadataItem->comment); + + // if(metadataItem->data.V && metadataItem->type==PS_META_MULTI) { + // if(metadataItem->data.V) { + // printMetadataList(metadataItem->data.V, " "); + // } +} + +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + + if( !runTestSuite(stderr,"psXML",tests,argc,argv)) { + return 1; + } + + return 0; +} + +//Parses an XML file into memory. Stores as a psXMLDoc// +psS32 testXMLInput00(void) +{ + //psXMLParseFile should return a psXMLDoc* of testFile1// + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + if (newXML == NULL ) { + fprintf(stderr, "Failed test point #1 xmlDocPtr is NULL \n"); + } + psFree(newXML); + return 0; +} + +//Parses an XML file from memory. Stores as a psXMLDoc// +psS32 testXMLInput01(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + char buffer[2048]; + if (!psXMLDocToMem(newXML, buffer)) { + fprintf(stderr, "Failed test point #2 psXMLDocToMem not Working \n"); + } + psXMLDoc *newDoc = NULL; + newDoc = psXMLParseMem(buffer, strlen(buffer) ); + if (newDoc == NULL) { + fprintf(stderr, "Failed test point #2 xmlDocPtr is NULL \n"); + } + psFree(newDoc); + psFree(newXML); + return 0; +} + +//Parses an XML file from a file descriptor. Stores as a psXMLDoc// +psS32 testXMLInput02(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + if (newXML == NULL ) { + fprintf(stderr, "Failed test point #3 xmlDocPtr is NULL \n"); + } + int fd = creat("psTest5.xml", 0666); + + if ( !psXMLDocToFD(newXML, fd) ) { + fprintf(stderr, "Failed test point #3 psXMLDocToFD not Working \n"); + } + + psXMLDoc *newDoc = NULL; + fd = open("psTest5.xml", O_RDWR, 0); + newDoc = psXMLParseFD(fd); + if ( newDoc == NULL ) { + fprintf(stderr, "Failed test point #3 xmlDocPtr is NULL \n"); + } + + close(fd); + psFree(newXML); + psFree(newDoc); + return 0; +} + +//Converts an existing psXMLDoc into psMetadata// +psS32 testXMLConvert00(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + if (metaData == NULL) { + fprintf(stderr, "Failed test point #4 - Convert to Metadata \n"); + } else { + printMetadata(metaData); + } + psFree(newXML); + psFree(metaData); + return 0; +} + +//Converts existing psMetadata into a psXMLDoc// +psS32 testXMLConvert01(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + if (metaData == NULL) { + fprintf(stderr, "Failed test point #5 - Convert from Metadata \n"); + } + psXMLDoc *XML2 = NULL; + XML2 = psMetadataToXMLDoc(metaData); + if( !psXMLDocToFile(XML2, "psTest2.xml") ) { + fprintf(stderr, "Failed test point #5 - Write to File \n"); + } + psFree(newXML); + psFree(XML2); + psFree(metaData); + return 0; +} + +//Writes a psXMLDoc to File// +psS32 testXMLOutput00(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + if( !psXMLDocToFile(newXML, "psTest.xml") ) { + fprintf(stderr, "Failed test point #6 - Write to File \n"); + } + psFree(newXML); + return 0; +} + +//Writes a psXMLDoc to Memory// +psS32 testXMLOutput01(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + char buffer[2048]; + FILE *file; + file = fopen("psTest3.xml", "w"); + if( !psXMLDocToMem(newXML, buffer) ) { + fprintf(stderr, "Failed test point #7 - Write to Memory \n"); + } + fprintf(file, "%s", buffer); + fclose(file); + psFree(newXML); + return 0; +} + +//Writes a psXMLDoc to a file descriptor// +psS32 testXMLOutput02(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile1); + int fd = creat("psTest4.xml", 0666); + + if( !psXMLDocToFD(newXML, fd) ) { + fprintf(stderr, "Failed test point #8 - Write to file descriptor \n"); + } + close(fd); + psFree(newXML); + return 0; +} + +psS32 testXMLWrongInput(void) +{ + psXMLDoc *newXML = NULL; + newXML = psXMLParseFile(testFile2); + if (newXML == NULL ) { + fprintf(stderr, "Failed to parse xml file. Incorrect data\n"); + } + psMetadata *metaData = NULL; + metaData = psXMLDocToMetadata(newXML); + if (metaData == NULL) { + fprintf(stderr, "Incorrect xml data for Metadata Conversion \n"); + } + psFree(newXML); + psFree(metaData); + psXMLDoc *newXML2 = NULL; + psMetadata *metaData2 = NULL; + newXML2 = psXMLParseFile(testFile3); + if (newXML2 == NULL ) { + fprintf(stderr, "Failed to parse xml file. Incorrect data\n"); + } + metaData2 = psXMLDocToMetadata(newXML2); + if (metaData2 == NULL) { + fprintf(stderr, "Incorrect xml data for Metadata Conversion \n"); + } + psFree(newXML2); + psFree(metaData2); + psXMLDoc *newXML3 = NULL; + psMetadata *metaData3 = NULL; + newXML3 = psXMLParseFile(testFile4); + if (newXML3 == NULL ) { + fprintf(stderr, "Failed to parse xml file. Incorrect data\n"); + } + metaData3 = psXMLDocToMetadata(newXML3); + if (metaData3 == NULL) { + fprintf(stderr, "Incorrect xml data for Metadata Conversion \n"); + } + psFree(newXML3); + psFree(metaData3); + return 0; +} Index: /branches/rel-1-1/psLib/utils/.cvsignore =================================================================== --- /branches/rel-1-1/psLib/utils/.cvsignore (revision 12167) +++ /branches/rel-1-1/psLib/utils/.cvsignore (revision 12167) @@ -0,0 +1,5 @@ +Makefile +Makefile.in +.deps +.libs +psTableParse Index: /branches/rel-1-1/psLib/utils/Makefile.am =================================================================== --- /branches/rel-1-1/psLib/utils/Makefile.am (revision 12167) +++ /branches/rel-1-1/psLib/utils/Makefile.am (revision 12167) @@ -0,0 +1,6 @@ +bin_SCRIPTS = psParsePrecessionTable psParseErrorCodes +bin_PROGRAMS = psTableParse + +psTableParse_SOURCES = psTableParse.c + +EXTRA_DIST = psParsePrecessionTable psParseErrorCodes Index: /branches/rel-1-1/psLib/utils/psParseErrorCodes =================================================================== --- /branches/rel-1-1/psLib/utils/psParseErrorCodes (revision 12167) +++ /branches/rel-1-1/psLib/utils/psParseErrorCodes (revision 12167) @@ -0,0 +1,84 @@ +#!/usr/bin/env perl + +# Provides functions for handling long command line options +use Getopt::Long; + +my @ErrorCodes = (); +my @ErrorDescriptions = (); + +my $data = "psErrorCodes.dat"; +my $outdir = "."; + +# Assign variables based on the presence of command line options to the script +GetOptions( + "data=s" => \$data, + "outdir=s" => \$outdir, + "verbose" => \$verbose, + "help" => \$help +); + +if ($help) { + print "Usage: parseErrorCodes ", "[--data=dataFile] ", "[--help] ", + "[--verbose] filename\n\n"; + exit(0); +} + +print "Using data file '$data'\n" if $verbose; +unless ( open( DATAFILE, "<", $data ) ) { + die "Can not open data file $data."; +} + +print "Datafile:\n" if $verbose; +while () { + chop; + if (/^\s*\#/) { + print "C $_\n" if $verbose; + } + else { + if (/^\s*(\w+)\s+([\%\w].*)/) { + my $ErrorCode = $1; + my $ErrorDescription = $2; + print " $ErrorCode: '$ErrorDescription'\n" if $verbose; + push( @ErrorCodes, $ErrorCode ); + push( @ErrorDescriptions, $ErrorDescription ); + } else { + print "I $_\n" if $verbose; + } + } +} +close(DATAFILE); + +my $found = $#ErrorCodes + 1; +print "\nFound $found error codes.\n" if $verbose; + +foreach (@ARGV) { + my $filename = $_.".in"; + m/\/?([\w\.]+)$/; + my $output = "$outdir/$1"; + + die "Failed to open input file '$filename'" + if !open( INFILE, "<", $filename ); + die "Failed to open output file '$output'" + if !open( OUTFILE, ">", $output ); + + print "\nOutput File: $output\n" if $verbose; + while () { + if (/\${ErrorCode}/ || /\${ErrorDescription}/ || /\${n}/) { + $line = $_; + for ( $n = 0 ; $n < $found ; $n++ ) { + $_ = $line; + s/\${ErrorCode}/$ErrorCodes[$n]/g; + s/\${ErrorDescription}/$ErrorDescriptions[$n]/g; + s/\${n}/$n/g; + print OUTFILE; + print if $verbose; + } + } else { + print OUTFILE; + print if $verbose; + } + } + + close(INFILE); + close(OUTFILE); +} Index: /branches/rel-1-1/psLib/utils/psParsePrecessionTable =================================================================== --- /branches/rel-1-1/psLib/utils/psParsePrecessionTable (revision 12167) +++ /branches/rel-1-1/psLib/utils/psParsePrecessionTable (revision 12167) @@ -0,0 +1,149 @@ +#!/usr/bin/env perl + +# Provides functions for handling long command line options +use Getopt::Long; + +# Assign variables based on the presence of command line options to the script +GetOptions( + "verbose" => \$verbose, + "help" => \$help +); + +if ($help) { + print "Usage: psParsePrecessionTable ", + "[--help] ", + "[--verbose] ", + "tableFile.txt"; + exit(0); +} + +# Loop through the arguements passed to the script +foreach (@ARGV) { + chomp; + $tableFile = $_; + s/\.txt$//; + $outputFile = $_ . ".dat"; + $coeffFile = $_ . ".coeff"; + print "Table output file is $outputFile\n", + "Coefficient output file is $coeffFile\n" if $verbose; + + unless ( open( TABLEFILE, "<", $tableFile ) ) { + die "Can not open table file $tableFile."; + } + + unless ( open( OUTPUTFILE, ">", $outputFile ) ) { + die "Can not create output file $outputFile."; + } + + unless ( open( COEFFFILE, ">", $coeffFile ) ) { + die "Can not create coeff file $coeffFile."; + } + + # Read Header and tranfer it to the output files + $found = 0; + while ($found < 2 && ($line=)) { + print "# $line" if $verbose; + print COEFFFILE "# $line"; + print OUTPUTFILE "# $line"; + if ($line =~ /^----/) { + $found++; + } + } + + + die "Failed to parse the polynomials in $tableFile." + if &parsePolynomialCoefficients; + + &parseTable; + + close(TABLEFILE); + close(OUTPUTFILE); + close(COEFFFILE); +} + + +exit(0); + +sub parsePolynomialCoefficients { + + + print "Parsing table for polynomial values\n" if $verbose; + + # find the polynomial part header + local $found = 0; + while (! $found && ($line=)) { + if ($line =~ /^Polynomial part/) { + print COEFFFILE "# $line"; + $found = 1; + } + } + + if (! $found) { + print "Failed to find the coefficient section" if $verbose; + return 1; + } + + print "Found proper polynomials section\n" if $verbose; + + # find the line of coefficients + $found = 0; + while (! $found && ($line=)) { + if ($line =~ /^\s*(\S+)\s+([\+-])\s*(\S+)\s+t\s+([\+-])\s*(\S+)\s+t\^2\s+([\+-])\s*(\S+)\s+t\^3\s+([\+-])\s*(\S+)\s+t\^4\s+([\+-])\s*(\S+)\s+t\^5/) { + $found = 1; + print COEFFFILE "$1 $2$3 $4$5 $6$7 $8$9 $10$11\n"; + print "Coeff: $1 $2$3 $4$5 $6$7 $8$9 $10$11\n" if $verbose; + } + if ($line =~ /^\-\-\-\-\-\-\-/) { + $found = 2; + } + } + + if ($found != 1) { + print "Failed to find the coefficients" if $verbose; + return 1; + } + + return 0; +} + + sub parseTable { + + print "Parsing table for non-polynomial values\n" if $verbose; + + # find the non-polynomial part header + local $found = 0; + local $j = 0; + while (! $found && ($line=)) { + if ($line =~ /^\s*j\s*=\s*(\d+)/) { + $j = $1; + print "Found data for j=$j\n" if $verbose; + $found = 1; + } else { + print OUTPUTFILE "# $line"; + } + } + + if (! $found) { + print "Failed to find the non-polynomial data" if $verbose; + return 1; + } + + # find the line of coefficients + local $items = 0; + while ($line=) { + if ($line =~ /^\s*j\s*=\s*(\d+)/) { + $j = $1; + print "Found data for j=$j\n" if $verbose; + } elsif ($line =~ /^\s*\d+\s(.+)/) { + print OUTPUTFILE "$j $1\n"; + $items++; + } + } + + print "Found $items data lines.\n" if $verbose; + + return 0; +} + + + Index: /branches/rel-1-1/psLib/utils/psTableParse.c =================================================================== --- /branches/rel-1-1/psLib/utils/psTableParse.c (revision 12167) +++ /branches/rel-1-1/psLib/utils/psTableParse.c (revision 12167) @@ -0,0 +1,381 @@ +/** @file psTableParse.c + * + * @brief Parses input data tables (finals2000A.data) and outputs files for specified format + * + * @ingroup psTableParse + * + * @author Dave Robbins, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-09-23 03:03:14 $ + * + * Copyright 2005 Maui High Performance Computing Center, University of Hawaii + */ + +//#include "pslib.h" +#include +#include +#include +#include + +static FILE *output = NULL; +static FILE *input = NULL; + +static void printHeader(char *filename); + +int main(int argc, char *argv[]) +{ + if (argc < 2) { + printf("\n Insufficient arguments. Use [-h] for help.\n"); + return 0; + } + if (!strncmp(argv[1], "-h", 2) ) { + printf("\n Usage: psTableParse inputTable.data outputTable.dat .\n"); + printf(" i.e. psTableParse finals.data finals.dat 1 3 4 8\n"); + printf("\n Sections:\n 1)MJD Date 2)X (Bull A) 3)Y (Bull A)"); + printf("\n 4)X (Bull B) 5)Y (Bull B) 6)dX (Bull A)"); + printf("\n 7)dY (Bull A) 8)dX (Bull B) 9)dY (Bull B)"); + printf("\n 10)UT1-UTC (Bull A) 11)UT1-UTC (Bull B)"); + printf("\n 12)Error in X (Bull A) 13)Error in Y (Bull A)"); + printf("\n 14)Error in dX (Bull A) 15)Error in dY (Bull A) "); + printf("\n 16)Error in UT1-UTC (Bull A)\n\n"); + return 0; + } + input = fopen(argv[1], "r"); + output = fopen(argv[2], "w"); + if (input == NULL) { + printf("\nERROR. Could not open input file.\n"); + return 0; + } + if (output == NULL) { + printf("\nERROR. Could not open or create output file.\n"); + return 0; + } + char data2[200]; + printHeader(argv[1]); + fprintf(output, "# "); + for (int i = 3; i < argc; i++) { + if(!strncmp(argv[i], "1", 2)) { + fprintf(output, "MJD "); + } + if(!strncmp(argv[i], "2", 2)) { + fprintf(output, " X (A) "); + } + if(!strncmp(argv[i], "3", 2)) { + fprintf(output, " Y (A) "); + } + if(!strncmp(argv[i], "4", 2)) { + fprintf(output, " X (B) "); + } + if(!strncmp(argv[i], "5", 2)) { + fprintf(output, " Y (B) "); + } + if(!strncmp(argv[i], "6", 2)) { + fprintf(output, " dX (A) "); + } + if(!strncmp(argv[i], "7", 2)) { + fprintf(output, " dY (A) "); + } + if(!strncmp(argv[i], "8", 2)) { + fprintf(output, " dX (B) "); + } + if(!strncmp(argv[i], "9", 2)) { + fprintf(output, " dY (B) "); + } + if(!strncmp(argv[i], "10", 2)) { + fprintf(output, "UT1-UTC (A) "); + } + if(!strncmp(argv[i], "11", 2)) { + fprintf(output, "UT1-UTC (B) "); + } + if(!strncmp(argv[i], "12", 2)) { + fprintf(output, " xErr (A) "); + } + if(!strncmp(argv[i], "13", 2)) { + fprintf(output, " yErr (A) "); + } + if(!strncmp(argv[i], "14", 2)) { + fprintf(output, " dXErr (A) "); + } + if(!strncmp(argv[i], "15", 2)) { + fprintf(output, " dYErr (A) "); + } + if(!strncmp(argv[i], "16", 2)) { + fprintf(output, "UT1-UTC Err"); + } + } + fprintf(output, "\n#\n#\n"); + int i; + while ( fscanf(input, "%188c", data2) != EOF) { + + for(int j = 3; j < argc; j++) { + if(!strncmp(argv[j], "1", 2) ) { + for (i = 7; i <= 14; i++) { + fprintf(output, "%c", data2[i]); + } + } + if(!strncmp(argv[j], "2", 2) ) { + if (data2[23] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 18; i <= 26; i++) { + if (i == 18 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 21; + } + if (i == 19) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "3", 2) ) { + if (data2[42] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 37; i <= 45; i++) { + if (i == 37 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 40; + } + if (i == 38) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "4", 2) ) { + if (data2[139] == ' ') { + fprintf(output, " 0.000 "); + // i = 144; + } else { + for (i = 134; i <= 143; i++) { + if (i == 135 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 138; + } + if (i == 136) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "5", 2) ) { + if (data2[149] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 144; i <= 153; i++) { + if (i == 145 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 148; + } + if (i == 146) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "6", 2) ) { + if (data2[102] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 97; i <= 105; i++) { + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "7", 2) ) { + if (data2[121] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 116; i <= 124; i++) { + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "8", 2) ) { + if (data2[170] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 165; i <= 174; i++) { + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "9", 2) ) { + if (data2[180] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 175; i <= 184; i++) { + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "10", 2) ) { + if (data2[63] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 58; i <= 67; i++) { + if (i == 58 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 61; + } + if (i == 59) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "11", 2) ) { + if (data2[159] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 154; i <= 164; i++) { + if (i == 155 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 158; + } + if (i == 156) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "12", 2) ) { + if (data2[32] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 27; i <= 35; i++) { + if (i == 27 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 30; + } + if (i == 28) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "13", 2) ) { + if (data2[51] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 46; i <= 54; i++) { + if (i == 46 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 49; + } + if (i == 47) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "14", 2) ) { + if (data2[111] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 106; i <= 114; i++) { + if (i == 106 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 109; + } + if (i == 107) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "15", 2) ) { + if (data2[131] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 125; i <= 133; i++) { + if (i == 125 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 128; + } + if (i == 126) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + if(!strncmp(argv[j], "16", 2) ) { + if (data2[73] == ' ') { + fprintf(output, " 0.000 "); + } else { + for (i = 68; i <= 77; i++) { + if (i == 155 && data2[i+1] == '-' && data2[i+2] == '.') { + fprintf(output, "-0."); + i = 71; + } + if (i == 69) { + if (data2[i] == ' ' && data2[i+1] == '.') { + fprintf(output, "0"); + i++; + } + } + fprintf(output, "%c", data2[i]); + } + } + } + fprintf(output, " "); + } + fprintf(output, "\n"); + } + + fclose(input); + fclose(output); + return 0; +} + +void printHeader(char *filename) +{ + if (output == NULL) { + printf("\n Unable to access output file. Output is NULL.\n"); + } else { + fprintf(output, "#\n# Stripped version of %s file\n#\n#\n", filename); + } +} + Index: /branches/rel-1-1/psModules/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/.cvsignore (revision 12167) @@ -0,0 +1,29 @@ +autom4te.cache +Makefile +config.log +config.status +libtool +Makefile.in +aclocal.m4 +configure +Doxyfile +DoxygenLog +docs +man +psmodules-config +psmodules.pc +bin +include +lib +config.guess +config.sub +depcomp +install-sh +ltmain.sh +missing +psmodule.kdevelop.pcs +psmodule-*.tar.gz +psmodule-*.tar.bz2 +compile +ChangeLog +psmodules-*.tar.* Index: /branches/rel-1-1/psModules/AUTHORS =================================================================== --- /branches/rel-1-1/psModules/AUTHORS (revision 12167) +++ /branches/rel-1-1/psModules/AUTHORS (revision 12167) @@ -0,0 +1,1 @@ +Maui High Performance Computing Center, University of Hawai'i Index: /branches/rel-1-1/psModules/COPYING =================================================================== --- /branches/rel-1-1/psModules/COPYING (revision 12167) +++ /branches/rel-1-1/psModules/COPYING (revision 12167) @@ -0,0 +1,6 @@ +(C) 2004 University of Hawai'i + +Permission to copy/distribute to be governed by: + Institute for Astronomy + 2680 Woodlawn Drive + Honolulu, HI 96822-1897 Index: /branches/rel-1-1/psModules/Doxyfile.in =================================================================== --- /branches/rel-1-1/psModules/Doxyfile.in (revision 12167) +++ /branches/rel-1-1/psModules/Doxyfile.in (revision 12167) @@ -0,0 +1,1079 @@ +# Doxyfile 1.3.4 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project +# +# All text after a hash (#) is considered a comment and will be ignored +# The format is: +# TAG = value [value, ...] +# For lists items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (" ") + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded +# by quotes) that should identify the project. + +PROJECT_NAME = "Pan-STARRS Module Library" + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. +# This could be handy for archiving the generated documentation or +# if some version control system is used. + +PROJECT_NUMBER = @VERSION@ + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) +# base path where the generated documentation will be put. +# If a relative path is entered, it will be relative to the location +# where doxygen was started. If left blank the current directory will be used. + +OUTPUT_DIRECTORY = @builddir@/docs + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# The default language is English, other supported languages are: +# Brazilian, Catalan, Chinese, Chinese-Traditional, Croatian, Czech, Danish, Dutch, +# Finnish, French, German, Greek, Hungarian, Italian, Japanese, Japanese-en +# (Japanese with English messages), Korean, Norwegian, Polish, Portuguese, +# Romanian, Russian, Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian. + +OUTPUT_LANGUAGE = English + +# This tag can be used to specify the encoding used in the generated output. +# The encoding is not always determined by the language that is chosen, +# but also whether or not the output is meant for Windows or non-Windows users. +# In case there is a difference, setting the USE_WINDOWS_ENCODING tag to YES +# forces the Windows encoding (this is the default for the Windows binary), +# whereas setting the tag to NO uses a Unix-style encoding (the default for +# all platforms other than Windows). + +USE_WINDOWS_ENCODING = NO + +# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will +# include brief member descriptions after the members that are listed in +# the file and class documentation (similar to JavaDoc). +# Set to NO to disable this. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend +# the brief description of a member or function before the detailed description. +# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. + +REPEAT_BRIEF = YES + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# Doxygen will generate a detailed section even if there is only a brief +# description. + +ALWAYS_DETAILED_SEC = YES + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all inherited +# members of a class in the documentation of that class as if those members were +# ordinary class members. Constructors, destructors and assignment operators of +# the base classes will not be shown. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full +# path before files name in the file list and in the header files. If set +# to NO the shortest path that makes the file name unique will be used. + +FULL_PATH_NAMES = NO + +# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag +# can be used to strip a user-defined part of the path. Stripping is +# only done if one of the specified strings matches the left-hand part of +# the path. It is allowed to use relative paths in the argument list. + +STRIP_FROM_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter +# (but less readable) file names. This can be useful is your file systems +# doesn't support long names like on DOS, Mac, or CD-ROM. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen +# will interpret the first line (until the first dot) of a JavaDoc-style +# comment as the brief description. If set to NO, the JavaDoc +# comments will behave just like the Qt-style comments (thus requiring an +# explict @brief command for a brief description. + +JAVADOC_AUTOBRIEF = YES + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen +# treat a multi-line C++ special comment block (i.e. a block of //! or /// +# comments) as a brief description. This used to be the default behaviour. +# The new default is to treat a multi-line C++ comment block as a detailed +# description. Set this tag to YES if you prefer the old behaviour instead. + +MULTILINE_CPP_IS_BRIEF = NO + +# If the DETAILS_AT_TOP tag is set to YES then Doxygen +# will output the detailed description near the top, like JavaDoc. +# If set to NO, the detailed description appears after the member +# documentation. + +DETAILS_AT_TOP = YES + +# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented +# member inherits the documentation from any documented member that it +# reimplements. + +INHERIT_DOCS = YES + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES, then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. + +DISTRIBUTE_GROUP_DOC = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. +# Doxygen uses this value to replace tabs by spaces in code fragments. + +TAB_SIZE = 4 + +# This tag can be used to specify a number of aliases that acts +# as commands in the documentation. An alias has the form "name=value". +# For example adding "sideeffect=\par Side Effects:\n" will allow you to +# put the command \sideeffect (or @sideeffect) in the documentation, which +# will result in a user-defined paragraph with heading "Side Effects:". +# You can put \n's in the value part of an alias to insert newlines. + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources +# only. Doxygen will then generate output that is more tailored for C. +# For instance, some of the names that are used will be different. The list +# of all members will be omitted, etc. + +OPTIMIZE_OUTPUT_FOR_C = YES + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java sources +# only. Doxygen will then generate output that is more tailored for Java. +# For instance, namespaces will be presented as packages, qualified scopes +# will look different, etc. + +OPTIMIZE_OUTPUT_JAVA = NO + +# Set the SUBGROUPING tag to YES (the default) to allow class member groups of +# the same type (for instance a group of public functions) to be put as a +# subgroup of that type (e.g. under the Public Functions section). Set it to +# NO to prevent subgrouping. Alternatively, this can be done per class using +# the \nosubgrouping command. + +SUBGROUPING = NO + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in +# documentation are documented, even if no documentation was available. +# Private class members and static file members will be hidden unless +# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES + +EXTRACT_ALL = YES + +# If the EXTRACT_PRIVATE tag is set to YES all private members of a class +# will be included in the documentation. + +EXTRACT_PRIVATE = NO + +# If the EXTRACT_STATIC tag is set to YES all static members of a file +# will be included in the documentation. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) +# defined locally in source files will be included in the documentation. +# If set to NO only classes defined in header files are included. + +EXTRACT_LOCAL_CLASSES = NO + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all +# undocumented members of documented classes, files or namespaces. +# If set to NO (the default) these members will be included in the +# various overviews, but no documentation section is generated. +# This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. +# If set to NO (the default) these classes will be included in the various +# overviews. This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all +# friend (class|struct|union) declarations. +# If set to NO (the default) these declarations will be included in the +# documentation. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any +# documentation blocks found inside the body of a function. +# If set to NO (the default) these blocks will be appended to the +# function's detailed documentation block. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation +# that is typed after a \internal command is included. If the tag is set +# to NO (the default) then the documentation will be excluded. +# Set it to YES to include the internal documentation. + +INTERNAL_DOCS = NO + +# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate +# file names in lower-case letters. If set to YES upper-case letters are also +# allowed. This is useful if you have classes or files whose names only differ +# in case and if your file system supports case sensitive file names. Windows +# users are advised to set this option to NO. + +CASE_SENSE_NAMES = YES + +# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen +# will show members with their full class and namespace scopes in the +# documentation. If set to YES the scope will be hidden. + +HIDE_SCOPE_NAMES = NO + +# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen +# will put a list of the files that are included by a file in the documentation +# of that file. + +SHOW_INCLUDE_FILES = YES + +# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] +# is inserted in the documentation for inline members. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen +# will sort the (detailed) documentation of file and class members +# alphabetically by member name. If set to NO the members will appear in +# declaration order. + +SORT_MEMBER_DOCS = YES + +# The GENERATE_TODOLIST tag can be used to enable (YES) or +# disable (NO) the todo list. This list is created by putting \todo +# commands in the documentation. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or +# disable (NO) the test list. This list is created by putting \test +# commands in the documentation. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or +# disable (NO) the bug list. This list is created by putting \bug +# commands in the documentation. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or +# disable (NO) the deprecated list. This list is created by putting +# \deprecated commands in the documentation. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional +# documentation sections, marked by \if sectionname ... \endif. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines +# the initial value of a variable or define consists of for it to appear in +# the documentation. If the initializer consists of more lines than specified +# here it will be hidden. Use a value of 0 to hide initializers completely. +# The appearance of the initializer of individual variables and defines in the +# documentation can be controlled using \showinitializer or \hideinitializer +# command in the documentation regardless of this setting. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated +# at the bottom of the documentation of classes and structs. If set to YES the +# list will mention the files that were used to generate the documentation. + +SHOW_USED_FILES = YES + +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated +# by doxygen. Possible values are YES and NO. If left blank NO is used. + +QUIET = NO + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated by doxygen. Possible values are YES and NO. If left blank +# NO is used. + +WARNINGS = YES + +# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings +# for undocumented members. If EXTRACT_ALL is set to YES then this flag will +# automatically be disabled. + +WARN_IF_UNDOCUMENTED = YES + +# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some +# parameters in a documented function, or documenting parameters that +# don't exist or using markup commands wrongly. + +WARN_IF_DOC_ERROR = YES + +# The WARN_FORMAT tag determines the format of the warning messages that +# doxygen can produce. The string should contain the $file, $line, and $text +# tags, which will be replaced by the file and line number from which the +# warning originated and the warning text. + +WARN_FORMAT = "$file:$line: $text" + +# The WARN_LOGFILE tag can be used to specify a file to which warning +# and error messages should be written. If left blank the output is written +# to stderr. + +WARN_LOGFILE = DoxygenLog + +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag can be used to specify the files and/or directories that contain +# documented source files. You may enter file names like "myfile.cpp" or +# directories like "/usr/src/myproject". Separate the files or directories +# with spaces. + +INPUT = src + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank the following patterns are tested: +# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx *.hpp +# *.h++ *.idl *.odl *.cs *.php *.php3 *.inc + +FILE_PATTERNS = *.h *.dox + +# The RECURSIVE tag can be used to turn specify whether or not subdirectories +# should be searched for input files as well. Possible values are YES and NO. +# If left blank NO is used. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used select whether or not files or directories +# that are symbolic links (a Unix filesystem feature) are excluded from the input. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. + +EXCLUDE_PATTERNS = *_wrap.c + +# The EXAMPLE_PATH tag can be used to specify one or more files or +# directories that contain example code fragments that are included (see +# the \include command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank all files are included. + +EXAMPLE_PATTERNS = + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude +# commands irrespective of the value of the RECURSIVE tag. +# Possible values are YES and NO. If left blank NO is used. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or +# directories that contain image that are included in the documentation (see +# the \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command , where +# is the value of the INPUT_FILTER tag, and is the name of an +# input file. Doxygen will then use the output that the filter program writes +# to standard output. + +INPUT_FILTER = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will be used to filter the input files when producing source +# files to browse (i.e. when SOURCE_BROWSER is set to YES). + +FILTER_SOURCE_FILES = NO + +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will +# be generated. Documented entities will be cross-referenced with these sources. + +SOURCE_BROWSER = YES + +# Setting the INLINE_SOURCES tag to YES will include the body +# of functions and classes directly in the documentation. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct +# doxygen to hide any special comment blocks from generated source code +# fragments. Normal C and C++ comments will always remain visible. + +STRIP_CODE_COMMENTS = NO + +# If the REFERENCED_BY_RELATION tag is set to YES (the default) +# then for each documented function all documented +# functions referencing it will be listed. + +REFERENCED_BY_RELATION = YES + +# If the REFERENCES_RELATION tag is set to YES (the default) +# then for each documented function all documented entities +# called/used by that function will be listed. + +REFERENCES_RELATION = YES + +# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen +# will generate a verbatim copy of the header file for each class for +# which an include is specified. Set to NO to disable this. + +VERBATIM_HEADERS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index +# of all compounds will be generated. Enable this if the project +# contains a lot of classes, structs, unions or interfaces. + +ALPHABETICAL_INDEX = YES + +# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then +# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns +# in which this list will be split (can be a number in the range [1..20]) + +COLS_IN_ALPHA_INDEX = 5 + +# In case all classes in a project start with a common prefix, all +# classes will be put under the same header in the alphabetical index. +# The IGNORE_PREFIX tag can be used to specify one or more prefixes that +# should be ignored while generating the index headers. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES (the default) Doxygen will +# generate HTML output. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `html' will be used as the default path. + +HTML_OUTPUT = html + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for +# each generated HTML page (for example: .htm,.php,.asp). If it is left blank +# doxygen will generate files with .html extension. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a personal HTML header for +# each generated HTML page. If it is left blank doxygen will generate a +# standard header. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a personal HTML footer for +# each generated HTML page. If it is left blank doxygen will generate a +# standard footer. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading +# style sheet that is used by each HTML page. It can be used to +# fine-tune the look of the HTML output. If the tag is left blank doxygen +# will generate a default style sheet + +HTML_STYLESHEET = + +# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, +# files or namespaces will be aligned in HTML using tables. If set to +# NO a bullet list will be used. + +HTML_ALIGN_MEMBERS = YES + +# If the GENERATE_HTMLHELP tag is set to YES, additional index files +# will be generated that can be used as input for tools like the +# Microsoft HTML help workshop to generate a compressed HTML help file (.chm) +# of the generated HTML documentation. + +GENERATE_HTMLHELP = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can +# be used to specify the file name of the resulting .chm file. You +# can add a path in front of the file if the result should not be +# written to the html output dir. + +CHM_FILE = + +# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can +# be used to specify the location (absolute path including file name) of +# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run +# the HTML help compiler on the generated index.hhp. + +HHC_LOCATION = + +# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag +# controls if a separate .chi index file is generated (YES) or that +# it should be included in the master .chm file (NO). + +GENERATE_CHI = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag +# controls whether a binary table of contents is generated (YES) or a +# normal table of contents (NO) in the .chm file. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members +# to the contents of the HTML help documentation and to the tree view. + +TOC_EXPAND = YES + +# The DISABLE_INDEX tag can be used to turn on/off the condensed index at +# top of each HTML page. The value NO (the default) enables the index and +# the value YES disables it. + +DISABLE_INDEX = NO + +# This tag can be used to set the number of enum values (range [1..20]) +# that doxygen will group on one line in the generated HTML documentation. + +ENUM_VALUES_PER_LINE = 10 + +# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be +# generated containing a tree-like index structure (just like the one that +# is generated for HTML Help). For this to work a browser that supports +# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, +# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are +# probably better off using the HTML help feature. + +GENERATE_TREEVIEW = NO + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be +# used to set the initial width (in pixels) of the frame in which the tree +# is shown. + +TREEVIEW_WIDTH = 250 + +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- + +# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will +# generate Latex output. + +GENERATE_LATEX = NO + +# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `latex' will be used as the default path. + +LATEX_OUTPUT = latex + +# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be +# invoked. If left blank `latex' will be used as the default command name. + +LATEX_CMD_NAME = latex + +# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to +# generate index for LaTeX. If left blank `makeindex' will be used as the +# default command name. + +MAKEINDEX_CMD_NAME = makeindex + +# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact +# LaTeX documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_LATEX = YES + +# The PAPER_TYPE tag can be used to set the paper type that is used +# by the printer. Possible values are: a4, a4wide, letter, legal and +# executive. If left blank a4wide will be used. + +PAPER_TYPE = letter + +# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX +# packages that should be included in the LaTeX output. + +EXTRA_PACKAGES = times + +# The LATEX_HEADER tag can be used to specify a personal LaTeX header for +# the generated latex document. The header should contain everything until +# the first chapter. If it is left blank doxygen will generate a +# standard header. Notice: only use this tag if you know what you are doing! + +LATEX_HEADER = + +# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated +# is prepared for conversion to pdf (using ps2pdf). The pdf file will +# contain links (just like the HTML output) instead of page references +# This makes the output suitable for online browsing using a pdf viewer. + +PDF_HYPERLINKS = YES + +# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of +# plain latex in the generated Makefile. Set this option to YES to get a +# higher quality PDF documentation. + +USE_PDFLATEX = YES + +# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. +# command to the generated LaTeX files. This will instruct LaTeX to keep +# running if errors occur, instead of asking the user for help. +# This option is also used when generating formulas in HTML. + +LATEX_BATCHMODE = NO + +# If LATEX_HIDE_INDICES is set to YES then doxygen will not +# include the index chapters (such as File Index, Compound Index, etc.) +# in the output. + +LATEX_HIDE_INDICES = NO + +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- + +# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output +# The RTF output is optimised for Word 97 and may not look very pretty with +# other RTF readers or editors. + +GENERATE_RTF = NO + +# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `rtf' will be used as the default path. + +RTF_OUTPUT = rtf + +# If the COMPACT_RTF tag is set to YES Doxygen generates more compact +# RTF documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_RTF = NO + +# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated +# will contain hyperlink fields. The RTF file will +# contain links (just like the HTML output) instead of page references. +# This makes the output suitable for online browsing using WORD or other +# programs which support those fields. +# Note: wordpad (write) and others do not support links. + +RTF_HYPERLINKS = NO + +# Load stylesheet definitions from file. Syntax is similar to doxygen's +# config file, i.e. a series of assigments. You only have to provide +# replacements, missing definitions are set to their default value. + +RTF_STYLESHEET_FILE = + +# Set optional variables used in the generation of an rtf document. +# Syntax is similar to doxygen's config file. + +RTF_EXTENSIONS_FILE = + +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- + +# If the GENERATE_MAN tag is set to YES (the default) Doxygen will +# generate man pages + +GENERATE_MAN = YES + +# The MAN_OUTPUT tag is used to specify where the man pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `man' will be used as the default path. + +MAN_OUTPUT = man + +# The MAN_EXTENSION tag determines the extension that is added to +# the generated man pages (default is the subroutine's section .3) + +MAN_EXTENSION = .3 + +# If the MAN_LINKS tag is set to YES and Doxygen generates man output, +# then it will generate one additional man file for each entity +# documented in the real man page(s). These additional files +# only source the real man page, but without them the man command +# would be unable to find the correct page. The default is NO. + +MAN_LINKS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- + +# If the GENERATE_XML tag is set to YES Doxygen will +# generate an XML file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_XML = NO + +# The XML_OUTPUT tag is used to specify where the XML pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `xml' will be used as the default path. + +XML_OUTPUT = xml + +# The XML_SCHEMA tag can be used to specify an XML schema, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_SCHEMA = + +# The XML_DTD tag can be used to specify an XML DTD, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_DTD = + +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- + +# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will +# generate an AutoGen Definitions (see autogen.sf.net) file +# that captures the structure of the code including all +# documentation. Note that this feature is still experimental +# and incomplete at the moment. + +GENERATE_AUTOGEN_DEF = NO + +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- + +# If the GENERATE_PERLMOD tag is set to YES Doxygen will +# generate a Perl module file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_PERLMOD = NO + +# If the PERLMOD_LATEX tag is set to YES Doxygen will generate +# the necessary Makefile rules, Perl scripts and LaTeX code to be able +# to generate PDF and DVI output from the Perl module output. + +PERLMOD_LATEX = NO + +# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be +# nicely formatted so it can be parsed by a human reader. This is useful +# if you want to understand what is going on. On the other hand, if this +# tag is set to NO the size of the Perl module output will be much smaller +# and Perl will parse it just the same. + +PERLMOD_PRETTY = YES + +# The names of the make variables in the generated doxyrules.make file +# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. +# This is useful so different doxyrules.make files included by the same +# Makefile don't overwrite each other's variables. + +PERLMOD_MAKEVAR_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- + +# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will +# evaluate all C-preprocessor directives found in the sources and include +# files. + +ENABLE_PREPROCESSING = YES + +# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro +# names in the source code. If set to NO (the default) only conditional +# compilation will be performed. Macro expansion can be done in a controlled +# way by setting EXPAND_ONLY_PREDEF to YES. + +MACRO_EXPANSION = NO + +# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES +# then the macro expansion is limited to the macros specified with the +# PREDEFINED and EXPAND_AS_PREDEFINED tags. + +EXPAND_ONLY_PREDEF = NO + +# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files +# in the INCLUDE_PATH (see below) will be search if a #include is found. + +SEARCH_INCLUDES = YES + +# The INCLUDE_PATH tag can be used to specify one or more directories that +# contain include files that are not input files but should be processed by +# the preprocessor. + +INCLUDE_PATH = + +# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard +# patterns (like *.h and *.hpp) to filter out the header-files in the +# directories. If left blank, the patterns specified with FILE_PATTERNS will +# be used. + +INCLUDE_FILE_PATTERNS = + +# The PREDEFINED tag can be used to specify one or more macro names that +# are defined before the preprocessor is started (similar to the -D option of +# gcc). The argument of the tag is a list of macros of the form: name +# or name=definition (no spaces). If the definition and the = are +# omitted =1 is assumed. + +PREDEFINED = DOXYGEN + +# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then +# this tag can be used to specify a list of macro names that should be expanded. +# The macro definition that is found in the sources will be used. +# Use the PREDEFINED tag if you want to use a different macro definition. + +EXPAND_AS_DEFINED = + +# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then +# doxygen's preprocessor will remove all function-like macros that are alone +# on a line, have an all uppercase name, and do not end with a semicolon. Such +# function macros are typically used for boiler-plate code, and will confuse the +# parser if not removed. + +SKIP_FUNCTION_MACROS = YES + +#--------------------------------------------------------------------------- +# Configuration::addtions related to external references +#--------------------------------------------------------------------------- + +# The TAGFILES option can be used to specify one or more tagfiles. +# Optionally an initial location of the external documentation +# can be added for each tagfile. The format of a tag file without +# this location is as follows: +# TAGFILES = file1 file2 ... +# Adding location for the tag files is done as follows: +# TAGFILES = file1=loc1 "file2 = loc2" ... +# where "loc1" and "loc2" can be relative or absolute paths or +# URLs. If a location is present for each tag, the installdox tool +# does not have to be run to correct the links. +# Note that each tag file must have a unique name +# (where the name does NOT include the path) +# If a tag file is not located in the directory in which doxygen +# is run, you must also specify the path to the tagfile here. + +TAGFILES = + +# When a file name is specified after GENERATE_TAGFILE, doxygen will create +# a tag file that is based on the input files it reads. + +GENERATE_TAGFILE = + +# If the ALLEXTERNALS tag is set to YES all external classes will be listed +# in the class index. If set to NO only the inherited external classes +# will be listed. + +ALLEXTERNALS = NO + +# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed +# in the modules index. If set to NO, only the current project's groups will +# be listed. + +EXTERNAL_GROUPS = YES + +# The PERL_PATH should be the absolute path and name of the perl script +# interpreter (i.e. the result of `which perl'). + +PERL_PATH = @PERL@ + +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- + +# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will +# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base or +# super classes. Setting the tag to NO turns the diagrams off. Note that this +# option is superceded by the HAVE_DOT option below. This is only a fallback. It is +# recommended to install and use dot, since it yields more powerful graphs. + +CLASS_DIAGRAMS = YES + +# If set to YES, the inheritance and collaboration graphs will hide +# inheritance and usage relations if the target is undocumented +# or is not a class. + +HIDE_UNDOC_RELATIONS = YES + +# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is +# available from the path. This tool is part of Graphviz, a graph visualization +# toolkit from AT&T and Lucent Bell Labs. The other options in this section +# have no effect if this option is set to NO (the default) + +HAVE_DOT = YES + +# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect inheritance relations. Setting this tag to YES will force the +# the CLASS_DIAGRAMS tag to NO. + +CLASS_GRAPH = YES + +# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect implementation dependencies (inheritance, containment, and +# class references variables) of the class with other documented classes. + +COLLABORATION_GRAPH = YES + +# If the UML_LOOK tag is set to YES doxygen will generate inheritance and +# collaboration diagrams in a style similiar to the OMG's Unified Modeling +# Language. + +UML_LOOK = YES + +# If set to YES, the inheritance and collaboration graphs will show the +# relations between templates and their instances. + +TEMPLATE_RELATIONS = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT +# tags are set to YES then doxygen will generate a graph for each documented +# file showing the direct and indirect include dependencies of the file with +# other documented files. + +INCLUDE_GRAPH = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and +# HAVE_DOT tags are set to YES then doxygen will generate a graph for each +# documented header file showing the documented files that directly or +# indirectly include this file. + +INCLUDED_BY_GRAPH = YES + +# If the CALL_GRAPH and HAVE_DOT tags are set to YES then doxygen will +# generate a call dependency graph for every global function or class method. +# Note that enabling this option will significantly increase the time of a run. +# So in most cases it will be better to enable call graphs for selected +# functions only using the \callgraph command. + +CALL_GRAPH = NO + +# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen +# will graphical hierarchy of all classes instead of a textual one. + +GRAPHICAL_HIERARCHY = YES + +# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images +# generated by dot. Possible values are png, jpg, or gif +# If left blank png will be used. + +DOT_IMAGE_FORMAT = png + +# The tag DOT_PATH can be used to specify the path where the dot tool can be +# found. If left blank, it is assumed the dot tool can be found on the path. + +DOT_PATH = + +# The DOTFILE_DIRS tag can be used to specify one or more directories that +# contain dot files that are included in the documentation (see the +# \dotfile command). + +DOTFILE_DIRS = + +# The MAX_DOT_GRAPH_WIDTH tag can be used to set the maximum allowed width +# (in pixels) of the graphs generated by dot. If a graph becomes larger than +# this value, doxygen will try to truncate the graph, so that it fits within +# the specified constraint. Beware that most browsers cannot cope with very +# large images. + +MAX_DOT_GRAPH_WIDTH = 1024 + +# The MAX_DOT_GRAPH_HEIGHT tag can be used to set the maximum allows height +# (in pixels) of the graphs generated by dot. If a graph becomes larger than +# this value, doxygen will try to truncate the graph, so that it fits within +# the specified constraint. Beware that most browsers cannot cope with very +# large images. + +MAX_DOT_GRAPH_HEIGHT = 1024 + +# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the +# graphs generated by dot. A depth value of 3 means that only nodes reachable +# from the root by following a path via at most 3 edges will be shown. Nodes that +# lay further from the root node will be omitted. Note that setting this option to +# 1 or 2 may greatly reduce the computation time needed for large code bases. Also +# note that a graph may be further truncated if the graph's image dimensions are +# not sufficient to fit the graph (see MAX_DOT_GRAPH_WIDTH and MAX_DOT_GRAPH_HEIGHT). +# If 0 is used for the depth value (the default), the graph is not depth-constrained. + +MAX_DOT_GRAPH_DEPTH = 0 + +# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will +# generate a legend page explaining the meaning of the various boxes and +# arrows in the dot generated graphs. + +GENERATE_LEGEND = YES + +# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will +# remove the intermediate dot files that are used to generate +# the various graphs. + +DOT_CLEANUP = YES + +#--------------------------------------------------------------------------- +# Configuration::addtions related to the search engine +#--------------------------------------------------------------------------- + +# The SEARCHENGINE tag specifies whether or not a search engine should be +# used. If set to NO the values of all tags below this one will be ignored. + +SEARCHENGINE = NO + Index: /branches/rel-1-1/psModules/INSTALL =================================================================== --- /branches/rel-1-1/psModules/INSTALL (revision 12167) +++ /branches/rel-1-1/psModules/INSTALL (revision 12167) @@ -0,0 +1,167 @@ +Basic Installation +================== + + These are generic installation instructions. + + The `configure' shell script attempts to guess correct values for +various system-dependent variables used during compilation. It uses +those values to create a `Makefile' in each directory of the package. +It may also create one or more `.h' files containing system-dependent +definitions. Finally, it creates a shell script `config.status' that +you can run in the future to recreate the current configuration, a file +`config.cache' that saves the results of its tests to speed up +reconfiguring, and a file `config.log' containing compiler output +(useful mainly for debugging `configure'). + + If you need to do unusual things to compile the package, please try +to figure out how `configure' could check whether to do them, and mail +diffs or instructions to the address given in the `README' so they can +be considered for the next release. If at some point `config.cache' +contains results you don't want to keep, you may remove or edit it. + + The file `configure.in' is used to create `configure' by a program +called `autoconf'. You only need `configure.in' if you want to change +it or regenerate `configure' using a newer version of `autoconf'. + +The simplest way to compile this package is: + + 1. `cd' to the directory containing the package's source code and type + `./configure' to configure the package for your system. If you're + using `csh' on an old version of System V, you might need to type + `sh ./configure' instead to prevent `csh' from trying to execute + `configure' itself. + + Running `configure' takes a while. While running, it prints some + messages telling which features it is checking for. + + 2. Type `make' to compile the package. + + 3. Type `make install' to install the programs and any data files and + documentation. + + 4. You can remove the program binaries and object files from the + source code directory by typing `make clean'. + +Compilers and Options +===================== + + Some systems require unusual options for compilation or linking that +the `configure' script does not know about. You can give `configure' +initial values for variables by setting them in the environment. Using +a Bourne-compatible shell, you can do that on the command line like +this: + CC=c89 CFLAGS=-O2 LIBS=-lposix ./configure + +Or on systems that have the `env' program, you can do it like this: + env CPPFLAGS=-I/usr/local/include LDFLAGS=-s ./configure + +Compiling For Multiple Architectures +==================================== + + You can compile the package for more than one kind of computer at the +same time, by placing the object files for each architecture in their +own directory. To do this, you must use a version of `make' that +supports the `VPATH' variable, such as GNU `make'. `cd' to the +directory where you want the object files and executables to go and run +the `configure' script. `configure' automatically checks for the +source code in the directory that `configure' is in and in `..'. + + If you have to use a `make' that does not supports the `VPATH' +variable, you have to compile the package for one architecture at a time +in the source code directory. After you have installed the package for +one architecture, use `make distclean' before reconfiguring for another +architecture. + +Installation Names +================== + + By default, `make install' will install the package's files in +`/usr/local/bin', `/usr/local/man', etc. You can specify an +installation prefix other than `/usr/local' by giving `configure' the +option `--prefix=PATH'. + + You can specify separate installation prefixes for +architecture-specific files and architecture-independent files. If you +give `configure' the option `--exec-prefix=PATH', the package will use +PATH as the prefix for installing programs and libraries. +Documentation and other data files will still use the regular prefix. + + If the package supports it, you can cause programs to be installed +with an extra prefix or suffix on their names by giving `configure' the +option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'. + +Optional Features +================= + + Some packages pay attention to `--enable-FEATURE' options to +`configure', where FEATURE indicates an optional part of the package. +They may also pay attention to `--with-PACKAGE' options, where PACKAGE +is something like `gnu-as' or `x' (for the X Window System). The +`README' should mention any `--enable-' and `--with-' options that the +package recognizes. + + For packages that use the X Window System, `configure' can usually +find the X include and library files automatically, but if it doesn't, +you can use the `configure' options `--x-includes=DIR' and +`--x-libraries=DIR' to specify their locations. + +Specifying the System Type +========================== + + There may be some features `configure' can not figure out +automatically, but needs to determine by the type of host the package +will run on. Usually `configure' can figure that out, but if it prints +a message saying it can not guess the host type, give it the +`--host=TYPE' option. TYPE can either be a short name for the system +type, such as `sun4', or a canonical name with three fields: + CPU-COMPANY-SYSTEM + +See the file `config.sub' for the possible values of each field. If +`config.sub' isn't included in this package, then this package doesn't +need to know the host type. + + If you are building compiler tools for cross-compiling, you can also +use the `--target=TYPE' option to select the type of system they will +produce code for and the `--build=TYPE' option to select the type of +system on which you are compiling the package. + +Sharing Defaults +================ + + If you want to set default values for `configure' scripts to share, +you can create a site shell script called `config.site' that gives +default values for variables like `CC', `cache_file', and `prefix'. +`configure' looks for `PREFIX/share/config.site' if it exists, then +`PREFIX/etc/config.site' if it exists. Or, you can set the +`CONFIG_SITE' environment variable to the location of the site script. +A warning: not all `configure' scripts look for a site script. + +Operation Controls +================== + + `configure' recognizes the following options to control how it +operates. + +`--cache-file=FILE' + Use and save the results of the tests in FILE instead of + `./config.cache'. Set FILE to `/dev/null' to disable caching, for + debugging `configure'. + +`--help' + Print a summary of the options to `configure', and exit. + +`--quiet' +`--silent' +`-q' + Do not print messages saying which checks are being made. + +`--srcdir=DIR' + Look for the package's source code in directory DIR. Usually + `configure' can determine that directory automatically. + +`--version' + Print the version of Autoconf used to generate the `configure' + script, and exit. + +`configure' also accepts some other, not widely useful, options. + Index: /branches/rel-1-1/psModules/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/Makefile.am (revision 12167) @@ -0,0 +1,26 @@ +SUBDIRS = src test + +bin_SCRIPTS = psmodules-config + +pkgconfigdir = $(libdir)/pkgconfig +pkgconfig_DATA= psmodules.pc + +EXTRA_DIST = \ + Doxyfile.in \ + psmodules-config.in \ + psmodules.pc.in \ + autogen.sh + +if HAVE_DOXYGEN +install-data-hook: doxygen + -$(mkdir_p) $(mandir)/man3 + chmod 0755 $(mandir)/man3 + -cp $(top_builddir)/docs/man/man3/* $(mandir)/man3 + +doxygen: + $(DOXYGEN) +endif + +CLEANFILES = $(prefix)/docs/psmodules/* *~ + +test: check Index: /branches/rel-1-1/psModules/NEWS =================================================================== --- /branches/rel-1-1/psModules/NEWS (revision 12167) +++ /branches/rel-1-1/psModules/NEWS (revision 12167) @@ -0,0 +1,1 @@ + Index: /branches/rel-1-1/psModules/README =================================================================== --- /branches/rel-1-1/psModules/README (revision 12167) +++ /branches/rel-1-1/psModules/README (revision 12167) @@ -0,0 +1,1 @@ + Index: /branches/rel-1-1/psModules/TODO =================================================================== --- /branches/rel-1-1/psModules/TODO (revision 12167) +++ /branches/rel-1-1/psModules/TODO (revision 12167) @@ -0,0 +1,1 @@ + Index: /branches/rel-1-1/psModules/autogen.sh =================================================================== --- /branches/rel-1-1/psModules/autogen.sh (revision 12167) +++ /branches/rel-1-1/psModules/autogen.sh (revision 12167) @@ -0,0 +1,114 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=psmodules +TEST_TYPE=-f +FILE=psmodules.pc.in + +DIE=0 + +if [ "`which glibtoolize 2> /dev/null`" != "" ] + then LIBTOOLIZE=glibtoolize + else LIBTOOLIZE=libtoolize +fi + +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOlIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +# bypass taps bootstrap.sh +cd ./test/tap +$LIBTOOLIZE --copy --force || echo "$LIBTOOlIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/rel-1-1/psModules/configure.ac =================================================================== --- /branches/rel-1-1/psModules/configure.ac (revision 12167) +++ /branches/rel-1-1/psModules/configure.ac (revision 12167) @@ -0,0 +1,338 @@ +AC_PREREQ(2.59) + +AC_INIT([psmodules],[1.1.0],[http://pan-starrs.ifa.hawaii.edu/bugzilla]) +AC_CONFIG_SRCDIR([psmodules.pc.in]) + +dnl this enables the building of libtap +AC_CONFIG_SUBDIRS([test/tap]) + +AM_INIT_AUTOMAKE([1.7 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +PSMODULES_LT_VERSION="1:1:0" +AC_SUBST(PSMODULES_LT_VERSION,$PSMODULES_LT_VERSION) + +IPP_STDCFLAGS + +AC_LANG(C) +AC_PROG_CC +AC_GNU_SOURCE +AC_PROG_INSTALL +AM_PROG_LIBTOOL +AC_SYS_LARGEFILE +AC_FUNC_FSEEKO + +AC_PREFIX_DEFAULT([`pwd`]) + +dnl ------------------- PERL options --------------------- + AC_ARG_WITH(perl, + [AS_HELP_STRING(--with-perl=FILE,Specify location of PERL executable.)], + [AC_CHECK_PROG(PERL, $withval, $withval)], + [AC_CHECK_PROG(PERL, perl, `which perl`)]) + if test "$PERL" == "" + then + AC_MSG_ERROR([PERL is required. Use --with-perl to specify its install location.]) + fi + AC_SUBST(PERL,$PERL) + +SRCPATH='${top_srcdir}/src' +SRCDIRS="extras config concepts camera astrom detrend imcombine objects" +# escape two escapes at this level so \\ gets passed to the shell and \ to perl +SRCINC=`echo "${SRCDIRS=}" | ${PERL} -pe "s|(\w+)|-I\\\\${SRCPATH=}/\1|g"` +SRCINC="-I${SRCPATH=} ${SRCINC=}" +SRCSUBLIBS=`echo "${SRCDIRS=}" | ${PERL} -pe "s|(\w+)|\1/libpsmodules\1.la|g"` +AC_SUBST(SRCSUBLIBS,${SRCSUBLIBS=}) +AC_SUBST(SRCINC,${SRCINC=}) +AC_SUBST([SRCDIRS],${SRCDIRS=}) + +dnl doxygen ------------------------------------------------------------------- +dnl doxygen doc generation is very, very slow so we're turing it off by default + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_ENABLE(doxygen, + [AS_HELP_STRING(--enable-doxygen ,enable manpage generation)], + [AC_MSG_RESULT(doxygen enabled) + AC_PATH_PROG([DOXYGEN], [doxygen], []) + ], + [AC_MSG_RESULT([doxygen disabled]) + doxygen=off + ] +) +AM_CONDITIONAL([HAVE_DOXYGEN], test -n "$DOXYGEN" -a "x$doxygen" != "xoff") + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------------------------------------------------ + +AC_PATH_PROG([ERRORCODES], [psParseErrorCodes], [missing]) +if test "$ERRORCODES" = "missing" ; then + AC_MSG_ERROR([psParseErrorCodes is required]) +fi + +dnl ------------------ kapa,libkapa options ------------------------- +dnl -- libkapa implies the requirement for libpng, libjpeg as well -- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +dnl test for command-line options: use ohana-config if not supplied +KAPA_CFLAGS_CONFIG="true" +KAPA_LIBS_CONFIG="true" +AC_ARG_WITH(kapa, +[AS_HELP_STRING(--with-kapa=DIR,Specify location of libkapa)], +[KAPA_CFLAGS="-I$withval/include" KAPA_LIBS="-L$withval/lib" + KAPA_CFLAGS_CONFIG="false" KAPA_LIBS_CONFIG="false"]) +AC_ARG_WITH(kapa-include, +[AS_HELP_STRING(--with-kapa-include=DIR,Specify libkapa include directory.)], +[KAPA_CFLAGS="-I$withval" KAPA_CFLAGS_CONFIG="false"]) +AC_ARG_WITH(kapa-lib, +[AS_HELP_STRING(--with-kapa-lib=DIR,Specify libkapa library directory.)], +[KAPA_LIBS="-L$withval" KAPA_LIBS_CONFIG="false"]) + +echo "KAPA_CFLAGS_CONFIG: $KAPA_CFLAGS_CONFIG" +echo "KAPA_LIBS_CONFIG: $KAPA_LIBS_CONFIG" +echo "KAPA_CFLAGS: $KAPA_CFLAGS" +echo "KAPA_LIBS: $KAPA_LIBS" + +dnl HAVE_KAPA is set to false if any of the tests fail +HAVE_KAPA="true" +AC_MSG_NOTICE([checking for libkapa]) +if test "$KAPA_CFLAGS_CONFIG" = "true" -o "$KAPA_LIBS_CONFIG" = "true"; then + AC_MSG_NOTICE([kapa info supplied by ohana-config]) + KAPA_CONFIG=`which ohana-config` + AC_CHECK_FILE($KAPA_CONFIG,[], + [HAVE_KAPA="false"; AC_MSG_WARN([libkapa is not found: output plots disabled. Obtain libkapa at http://kiawe.ifa.hawaii.edu/Elixir/Ohana or use --with-kapa to specify location])]) + + echo "HAVE_KAPA: $HAVE_KAPA" + echo "KAPA_CFLAGS_CONFIG: $KAPA_CFLAGS_CONFIG" + + if test "$HAVE_KAPA" = "true" -a "$KAPA_CFLAGS_CONFIG" = "true" ; then + AC_MSG_NOTICE([libkapa cflags info supplied by ohana-config]) + AC_MSG_CHECKING([libkapa cflags]) + KAPA_CFLAGS="`${KAPA_CONFIG} --cflags`" + AC_MSG_RESULT([${KAPA_CFLAGS}]) + fi + + if test "$HAVE_KAPA" = "true" -a "$KAPA_LIBS_CONFIG" = "true" ; then + AC_PATH_X + if test "$no_x" = "yes" ; then + AC_MSG_WARN([X11 not found: output plots using kapa disabled. Use --x-includes and --x-libraries if required.]) + HAVE_KAPA="false" + else + AC_MSG_NOTICE([libkapa ldflags info supplied by ohana-config]) + AC_MSG_CHECKING([libkapa ldflags]) + if test -n "$x_libraries" ; then + KAPA_LIBS="`${KAPA_CONFIG} --libs` -L$x_libraries -lX11" + else + KAPA_LIBS="`${KAPA_CONFIG} --libs` -lX11" + fi + if test -n "$x_includes" ; then + KAPA_CFLAGS="${KAPA_CFLAGS} -I$x_includes" + else + KAPA_CFLAGS="${KAPA_CFLAGS}" + fi + AC_MSG_RESULT([${KAPA_LIBS}]) + fi + fi +fi + +if test "$HAVE_KAPA" = "true" ; then + AC_MSG_NOTICE([libkapa supplied]) + PSMODULES_CFLAGS="${PSMODULES_CFLAGS} ${KAPA_CFLAGS}" + PSMODULES_LIBS="${PSMODULES_LIBS} ${KAPA_LIBS}" +else + AC_MSG_NOTICE([libkapa ignored]) +fi + +dnl HAVE_KAPA is set to false if any of the tests fail +dnl HAVE_KAPA=true +dnl AC_CHECK_HEADERS([kapa.h], +dnl [PSMODULES_CFLAGS="$PSMODULES_CFLAGS $KAPA_CFLAGS" AC_SUBST(KAPA_CFLAGS)], +dnl [HAVE_KAPA=false; AC_MSG_WARN([libkapa headers not found: output plots disabled. Obtain libkapa at http://kiawe.ifa.hawaii.edu/Elixir/Ohana or use --with-kapa to specify location.])] +dnl ) +dnl AC_CHECK_LIB(kapa,KapaInitGraph, +dnl [PSMODULES_LIBS="$PSMODULES_LIBS $JPEG_LDFLAGS -ljpeg"], +dnl [HAVE_KAPA=false; AC_MSG_WARN([libkapa headers not found: output plots disabled. Obtain libkapa at http://kiawe.ifa.hawaii.edu/Elixir/Ohana or use --with-kapa to specify location.])],[-lm] +dnl ) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------ libjpeg options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(jpeg, +[AS_HELP_STRING(--with-jpeg=DIR,Specify location of libjpeg.)], +[JPEG_CFLAGS="-I$withval/include" + JPEG_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(jpeg-include, +[AS_HELP_STRING(--with-jpeg-include=DIR,Specify libjpeg include directory.)], +[JPEG_CFLAGS="-I$withval"]) +AC_ARG_WITH(jpeg-lib, +[AS_HELP_STRING(--with-jpeg-lib=DIR,Specify libjpeg library directory.)], +[JPEG_LDFLAGS="-L$withval"]) + +CFLAGS="${CFLAGS} ${JPEG_CFLAGS}" +CPPFLAGS=${CFLAGS} +LDFLAGS="${LDFLAGS} ${JPEG_LDFLAGS}" + +AC_CHECK_HEADERS([jpeglib.h], + [PSMODULES_CFLAGS="$PSMODULES_CFLAGS $JPEG_CFLAGS" AC_SUBST(JPEG_CFLAGS)], + [HAVE_KAPA=false; AC_MSG_WARN([libjpeg headers not found: output plots disabled. Obtain libjpeg from http://www.ijg.org/ or use --with-jpeg to specify location.])] +) + +AC_CHECK_LIB(jpeg,jpeg_CreateCompress, + [PSMODULES_LIBS="$PSMODULES_LIBS $JPEG_LDFLAGS -ljpeg"], + [HAVE_KAPA=false; AC_MSG_WARN([libjpeg library not found: output plots disabled. Obtain libjpeg from http://www.ijg.org/ or use --with-jpeg to specify location.])] +) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------ libpng options --------------------- + +dnl save LIBS/CFLAGS/LDFLAGS +TMP_LIBS=${LIBS} +TMP_CFLAGS=${CFLAGS} +TMP_LDFLAGS=${LDFLAGS} +TMP_CPPFLAGS=${CPPFLAGS} + +AC_ARG_WITH(png, +[AS_HELP_STRING(--with-png=DIR,Specify location of libpng.)], +[PNG_CFLAGS="-I$withval/include" + PNG_LDFLAGS="-L$withval/lib"]) +AC_ARG_WITH(png-include, +[AS_HELP_STRING(--with-png-include=DIR,Specify libpng include directory.)], +[PNG_CFLAGS="-I$withval"]) +AC_ARG_WITH(png-lib, +[AS_HELP_STRING(--with-png-lib=DIR,Specify libpng library directory.)], +[PNG_LDFLAGS="-L$withval"]) + +CFLAGS="${CFLAGS} ${PNG_CFLAGS}" +CPPFLAGS=${CFLAGS} +LDFLAGS="${LDFLAGS} ${PNG_LDFLAGS}" + +AC_CHECK_HEADERS([png.h], + [PSMODULES_CFLAGS="$PSMODULES_CFLAGS $PNG_CFLAGS" AC_SUBST(PNG_CFLAGS)], + [HAVE_KAPA=false; AC_MSG_WARN([libpng headers not found: output plots disabled. Obtain libpng from http://www.ijg.org/ or use --with-png to specify location.])] +) + +AC_CHECK_LIB(png,png_init_io, + [PSMODULES_LIBS="$PSMODULES_LIBS $PNG_LDFLAGS -lpng"], + [HAVE_KAPA=false; AC_MSG_WARN([libpng library not found: output plots disabled. Obtain libpng from http://www.ijg.org/ or use --with-png to specify location.])] +) + +dnl restore the CFLAGS/LDFLAGS +LIBS=${TMP_LIBS} +CFLAGS=${TMP_CFLAGS} +LDFLAGS=${TMP_LDFLAGS} +CPPFLAGS=${TMP_CPPFLAGS} + +dnl ------------------ use kapa or not? --------------------- + +if test "$HAVE_KAPA" == "true" ; then + AC_MSG_RESULT([including plotting functions]) + AC_DEFINE([HAVE_KAPA],[1],[enable use of libkapa]) +else + AC_MSG_RESULT([skipping plotting functions]) + AC_DEFINE([HAVE_KAPA],[0],[disable use of libkapa]) +fi + +dnl pslib --------------------------------------------------------------------- +AC_ARG_WITH(pslib-config, +[ --with-pslib-config=FILE Specify location of psLib-config script], +[PSLIB_CONFIG=$withval]) + +if test -z ${PSLIB_CONFIG} ; then + PKG_CHECK_MODULES([PSLIB], [pslib >= 0.12.0]) +else + AC_CHECK_FILE($PSLIB_CONFIG,[], + [AC_MSG_ERROR([psLib is required. If not in path, use --with-pslib-config to specify pslib-config script location.])]) + AC_MSG_CHECKING([PSLIB_CFLAGS]) + PSLIB_CFLAGS="`${PSLIB_CONFIG} --cflags`" + AC_MSG_RESULT([${PSLIB_CFLAGS}]) + AC_MSG_CHECKING([PSLIB_LIBS]) + PSLIB_LIBS="`${PSLIB_CONFIG} --libs`" + AC_MSG_RESULT([${PSLIB_LIBS}]) +fi + +PSMODULES_CFLAGS="${PSMODULES_CFLAGS=} ${PSLIB_CFLAGS}" +PSMODULES_LIBS="${PSMODULES_LIBS=} ${PSLIB_LIBS}" + +dnl nebclient ----------------------------------------------------------------- + +PKG_CHECK_MODULES([NEBCLIENT], [nebclient >= 0.0.2], + [AC_DEFINE([HAVE_NEBCLIENT], 1, [Define to 1 if libnebclient is avaiable])], [AC_MSG_RESULT([no])] +) + +PSMODULES_CFLAGS="${PSMODULES_CFLAGS=} ${NEBCLIENT_CFLAGS}" +PSMODULES_LIBS="${PSMODULES_LIBS=} ${NEBCLIENT_LIBS}" + +echo "PSMODULES_CFLAGS: $PSMODULES_CFLAGS" +echo "PSMODULE_LIBS: $PSMODULES_LIBS" + +dnl ------- enable -Werror after all of the probes have run --------- +IPP_STDOPTS + +CFLAGS="${CFLAGS} -Wall -Werror" +dnl enable POSIX/XSI and C99 compliance +CFLAGS="${CFLAGS=} -D_XOPEN_SOURCE=600 -D_POSIX_C_SOURCE=200112L -std=c99" + +dnl ---------------- export variables -------------------- + + +AC_SUBST([PSMODULES_CFLAGS]) +AC_SUBST([PSMODULES_LIBS]) + +AC_CONFIG_FILES([ + Makefile + src/Makefile + src/astrom/Makefile + src/camera/Makefile + src/config/Makefile + src/concepts/Makefile + src/detrend/Makefile + src/imcombine/Makefile + src/objects/Makefile + src/extras/Makefile + test/Makefile + test/astrom/Makefile + test/config/Makefile + test/camera/Makefile + test/concepts/Makefile + test/detrend/Makefile + test/extras/Makefile + test/imcombine/Makefile + test/objects/Makefile + test/pstap/Makefile + test/pstap/src/Makefile + Doxyfile + psmodules-config + psmodules.pc +]) + +AC_OUTPUT Index: /branches/rel-1-1/psModules/psmodules-config.in =================================================================== --- /branches/rel-1-1/psModules/psmodules-config.in (revision 12167) +++ /branches/rel-1-1/psModules/psmodules-config.in (revision 12167) @@ -0,0 +1,76 @@ +#! /bin/sh + +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@/@PACKAGE_NAME@ + +usage() +{ + cat < +#endif + +/******************************************************************************/ +/* INCLUDE FILES */ +/******************************************************************************/ + +//#include +//#include +//#include +//#include // for unlink +#include +#include "pmFPA.h" +#include "pmFPAExtent.h" +#include "pmAstrometryObjects.h" +#include "pmAstrometryDistortion.h" +#include "pmKapaPlots.h" + +static void pmAstromGradientFree (pmAstromGradient *grad) +{ + + if (grad == NULL) + return; + + return; +} + +pmAstromGradient *pmAstromGradientAlloc () +{ + + pmAstromGradient *gradient = psAlloc (sizeof(pmAstromGradient)); + psMemSetDeallocator(gradient, (psFreeFunc) pmAstromGradientFree); + + // XXX init any of the data values? + + return (gradient); +} + +psArray *pmAstromMeasureGradients(psArray *gradients, psArray *rawstars, psArray *refstars, psArray *matches, psMetadata *config) +{ + + if (gradients == NULL) { + gradients = psArrayAllocEmpty (100); + } + + // determine range + // XXX for the moment, I'm hard-wiring this for megacam + // XXX we need to get the chip dimensions from the metadata somewhere + int Nx = 2; + int Ny = 2; + int DX = 2080 / Nx; + int DY = 4600 / Ny; + + psPolynomial2D *local = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, 1, 1); + local->mask[1][1] = 1; + + // measure gradient for fractional chip regions + for (int nx = 0; nx < Nx; nx++) { + for (int ny = 0; ny < Ny; ny++) { + int Xmin = nx*DX; + int Xmax = Xmin + DX; + int Ymin = ny*DY; + int Ymax = Ymin + DY; + + psStats *stats = NULL; + psVector *mask = NULL; + pmAstromGradient *grad = NULL; + + psVector *L = psVectorAllocEmpty (100, PS_TYPE_F32); + psVector *M = psVectorAllocEmpty (100, PS_TYPE_F32); + psVector *dP = psVectorAllocEmpty (100, PS_TYPE_F32); + psVector *dQ = psVectorAllocEmpty (100, PS_TYPE_F32); + + // XXX this is a bit inefficient: first sorting by X or Y could speed this up. + // XXX or assigning to a segment in a single pass first + // select the stars within this chip region + int Npts = 0; + for (int i = 0; i < matches->n; i++) { + + pmAstromMatch *match = matches->data[i]; + + pmAstromObj *raw = rawstars->data[match->raw]; + + if (raw->chip->x < Xmin) + continue; + if (raw->chip->x > Xmax) + continue; + if (raw->chip->y < Ymin) + continue; + if (raw->chip->y > Ymax) + continue; + + pmAstromObj *ref = refstars->data[match->ref]; + + L->data.F32[Npts] = ref->FP->x; + M->data.F32[Npts] = ref->FP->y; + + // P,Q = L,M + terms of order epsilon. + // measuring the gradient constrains thos terms + dP->data.F32[Npts] = ref->TP->x - raw->FP->x; + dQ->data.F32[Npts] = ref->TP->y - raw->FP->y; + + psVectorExtend (L, 100, 1); + psVectorExtend (M, 100, 1); + psVectorExtend (dP, 100, 1); + psVectorExtend (dQ, 100, 1); + Npts++; + } + + if (Npts < 5) + goto skip; + + // stats structure and mask for use in measuring the clipping statistic + // this analysis has too few data points to use the robust median method + stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + mask = psVectorAlloc (Npts, PS_TYPE_MASK); + psVectorInit (mask, 0); + + grad = pmAstromGradientAlloc (); + + // fit the collection of positions and offsets with a local 1st order gradient + // apply 3hi/3lo sigma clipping to the fitted data values + // the mask is used to mark the points which pass / fail the fit + if (!psVectorClipFitPolynomial2D (local, stats, mask, 0xff, dP, NULL, L, M)) { + goto skip; + } + + grad->dTPdL.x = local->coeff[1][0]; + grad->dTPdM.x = local->coeff[0][1]; + + // fit the collection of positions and offsets with a local 1st order gradient + // apply 3hi/3lo sigma clipping to the fitted data values + // the mask is used to mark the points which pass / fail the fit + if (!psVectorClipFitPolynomial2D (local, stats, mask, 0xff, dQ, NULL, L, M)) { + goto skip; + } + + grad->dTPdL.y = local->coeff[1][0]; + grad->dTPdM.y = local->coeff[0][1]; + + // also measure the L and M median positions as a representative coordinate + psVectorStats (stats, L, NULL, NULL, 0); + grad->FP.x = stats->sampleMedian; + + psVectorStats (stats, M, NULL, NULL, 0); + grad->FP.y = stats->sampleMedian; + + psArrayAdd (gradients, 100, grad); + +skip: + psFree (grad); + psFree (stats); + psFree (mask); + psFree (L); + psFree (M); + psFree (dP); + psFree (dQ); + } + } + psFree (local); + return gradients; +} + +bool pmAstromFitDistortion(pmFPA *fpa, psArray *gradients, psMetadata *config) +{ + + psPolynomial2D *localX = NULL; + psPolynomial2D *localY = NULL; + + // assign the gradient elements to psVectors for fitting + psVector *dPdL = psVectorAlloc (gradients->n, PS_TYPE_F32); + psVector *dQdL = psVectorAlloc (gradients->n, PS_TYPE_F32); + psVector *dPdM = psVectorAlloc (gradients->n, PS_TYPE_F32); + psVector *dQdM = psVectorAlloc (gradients->n, PS_TYPE_F32); + psVector *L = psVectorAlloc (gradients->n, PS_TYPE_F32); + psVector *M = psVectorAlloc (gradients->n, PS_TYPE_F32); + + for (int i = 0; i < gradients->n; i++) { + + pmAstromGradient *grad = gradients->data[i]; + + dPdL->data.F32[i] = grad->dTPdL.x; + dQdL->data.F32[i] = grad->dTPdL.y; + + dPdM->data.F32[i] = grad->dTPdM.x; + dQdM->data.F32[i] = grad->dTPdM.y; + + L->data.F32[i] = grad->FP.x; + M->data.F32[i] = grad->FP.y; + } + + // mask and stats structure for measuring the clipping statistic + // this analysis has too few data points to use the robust median method + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + psVector *mask = psVectorAlloc (gradients->n, PS_TYPE_MASK); + psVectorInit (mask, 0); + + // the order of the gradient fits need to be 1 less than the distortion term + // determine the gradient order(s) from the fpa->toTP structure + localX = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, fpa->toTPA->x->nX-1, fpa->toTPA->x->nY); + localY = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, fpa->toTPA->x->nX, fpa->toTPA->x->nY-1); + + // set masks based on fpa->toTPA + for (int i = 0; i <= fpa->toTPA->x->nX; i++) { + for (int j = 0; j <= fpa->toTPA->x->nY; j++) { + if (fpa->toTPA->x->mask[i][j]) { + if ((i > 0) && (i <= fpa->toTPA->x->nX)) { + localX->mask[i-1][j] = 1; + } + if ((j > 0) && (j <= fpa->toTPA->x->nY)) { + localY->mask[i][j-1] = 1; + } + } + } + } + + // fit the local gradients in each direction + if (!psVectorClipFitPolynomial2D (localX, stats, mask, 0xff, dPdL, NULL, L, M)) { + psLogMsg ("psastro", 3, "failed to fit x-dir gradient\n"); + return false; + } + + if (!psVectorClipFitPolynomial2D (localY, stats, mask, 0xff, dPdM, NULL, L, M)) { + psLogMsg ("psastro", 3, "failed to fit y-dir gradient\n"); + return false; + } + + // update fpa->toTP distortion terms + fpa->toTPA->x->coeff[0][0] = 0; + for (int i = 1; i <= fpa->toTPA->x->nX; i++) { + if (!fpa->toTPA->x->mask[i][0]) { + fpa->toTPA->x->coeff[i][0] = localX->coeff[i-1][0] / i; + } + } + for (int j = 1; j <= fpa->toTPA->x->nY; j++) { + if (!fpa->toTPA->x->mask[0][j]) { + fpa->toTPA->x->coeff[0][j] = localY->coeff[0][j-1] / j; + } + } + for (int i = 1; i <= fpa->toTPA->x->nX; i++) { + for (int j = 1; j <= fpa->toTPA->x->nY; j++) { + if (!fpa->toTPA->x->mask[i][j]) { + fpa->toTPA->x->coeff[i][j] = 0.5*(localX->coeff[i-1][j] / i + localY->coeff[i][j-1] / j); + } + } + } + fpa->toTPA->x->coeff[1][0] += 1.0; + psFree (localX); + psFree (localY); + + // the order of the gradient fits need to be 1 less than the distortion term + // determine the gradient order(s) from the fpa->toTP structure + localX = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, fpa->toTPA->y->nX-1, fpa->toTPA->y->nY); + localY = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, fpa->toTPA->y->nX, fpa->toTPA->y->nY-1); + + // set masks based on fpa->toTP + for (int i = 0; i < fpa->toTPA->y->nX; i++) { + for (int j = 0; j < fpa->toTPA->y->nY; j++) { + if (fpa->toTPA->y->mask[i][j]) { + if ((i > 0) && (i <= fpa->toTPA->y->nX)) { + localX->mask[i-1][j] = 1; + } + if ((j > 0) && (j <= fpa->toTPA->y->nY)) { + localY->mask[i][j-1] = 1; + } + } + } + } + + // fit the local gradients in each direction + psVectorClipFitPolynomial2D (localX, stats, mask, 0xff, dQdL, NULL, L, M); + psVectorClipFitPolynomial2D (localY, stats, mask, 0xff, dQdM, NULL, L, M); + + // update fpa->toTP distortion terms + fpa->toTPA->y->coeff[0][0] = 0; + for (int i = 1; i <= fpa->toTPA->y->nX; i++) { + if (!fpa->toTPA->y->mask[i][0]) { + fpa->toTPA->y->coeff[i][0] = localX->coeff[i-1][0] / i; + } + } + for (int j = 1; j <= fpa->toTPA->y->nY; j++) { + if (!fpa->toTPA->y->mask[0][j]) { + fpa->toTPA->y->coeff[0][j] = localY->coeff[0][j-1] / j; + } + } + for (int i = 1; i <= fpa->toTPA->y->nX; i++) { + for (int j = 1; j <= fpa->toTPA->y->nY; j++) { + if (!fpa->toTPA->y->mask[i][j]) { + fpa->toTPA->y->coeff[i][j] = 0.5*(localX->coeff[i-1][j] / i + localY->coeff[i][j-1] / j); + } + } + } + fpa->toTPA->y->coeff[0][1] += 1.0; + psFree (localX); + psFree (localY); + + // XXX free unneeded structures + psFree (dPdL); + psFree (dPdM); + psFree (dQdL); + psFree (dQdM); + psFree (L); + psFree (M); + psFree (stats); + psFree (mask); + + // XXX need to reset the fromTPA terms here + // XXX choose an appropriate region based on the range of values + // in L and M? + // psRegion region = psRegionSet (-125000, +125000, -125000, +125000); + psRegion *region = pmFPAExtent (fpa); + psFree (fpa->fromTPA); + fpa->fromTPA = psPlaneTransformInvert(NULL, fpa->toTPA, *region, 50); + psFree (region); + + return true; +} Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryDistortion.h =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryDistortion.h (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryDistortion.h (revision 12167) @@ -0,0 +1,58 @@ +/* @file pmAstrometryDistortion.h + * @brief This file defines the basic types for measuring and fitting the focal-plane distortion. + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_ASTROMETRY_DISTORTION_H +#define PM_ASTROMETRY_DISTORTION_H + +/// @addtogroup Astrometry +/// @{ + +/* The following data structure carries the information about the residual + * gradient of source positions in the tangent plane (pmAstromObj.TP) as a + * function of position in the focal plane (pmAstromObj.FP). + */ +typedef struct +{ + psPlane FP; + psPlane dTPdL; + psPlane dTPdM; +} +pmAstromGradient; + +pmAstromGradient *pmAstromGradientAlloc (); + +/* The following function determines the position residual, in the tangent + * plane, as a function of position in the focal plane, for a collection of raw + * measurements and matched reference stars. The configuration data must include + * the bin size over which the gradient is measured (keyword: ASTROM.GRAD.BOX). + * The function returns an array of pmAstromGradient structures, defined below. + */ +psArray *pmAstromMeasureGradients( + psArray *gradients, + psArray *rawstars, + psArray *refstars, + psArray *matches, + psMetadata *config +); + +/* The gradient set measured above can be fitted with a pair of 2D + * polynomials. The resulting fits can then be related back to the implied + * polynomials which represent the distortion. The following function performs + * the fit and applies the result to the distortion transformation of the + * supplied pmFPA structure. The configuration variable supplies the polynomial + * order (keyword: ASTROM.DISTORT.ORDER). + */ +bool pmAstromFitDistortion( + pmFPA *fpa, + psArray *gradients, + psMetadata *config); + +/// @} +#endif // PM_ASTROMETRY_DISTORTION_H Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.c =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.c (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.c (revision 12167) @@ -0,0 +1,876 @@ +/** @file pmAstrometryObjects.c +* +* @brief This file defines the basic types for matching objects +* based on their astrometry. +* +* @ingroup AstroImage +* +* @author EAM, IfA +* +* @version $Revision: 1.26 $ $Name: not supported by cvs2svn $ +* @date $Date: 2007-02-13 03:14:42 $ +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ + +#ifdef HAVE_CONFIG_H +#include +#endif + +/******************************************************************************/ +/* INCLUDE FILES */ +/******************************************************************************/ +#include +#include +#include +#include +#include // for unlink +#include +#include "pmFPA.h" +#include "pmAstrometryObjects.h" + +# define DEG_RAD 57.295779513082322 +# define RAD_DEG 0.017453292519943 + +#define PM_ASTROMETRYOBJECTS_DEBUG 1 +/****************************************************************************** +pmAstromObjSortByMag(**a, **b): sort by mag (descending) + +Is this a private routine? +Should we do the early asserts? + ******************************************************************************/ +int pmAstromObjSortByMag( + const void **a, + const void **b) +{ + if (PM_ASTROMETRYOBJECTS_DEBUG) { + PS_ASSERT_PTR_NON_NULL(a, 0); + PS_ASSERT_PTR_NON_NULL(*a, 0); + PS_ASSERT_PTR_NON_NULL(b, 0); + PS_ASSERT_PTR_NON_NULL(*b, 0); + } + + pmAstromObj *A = *(pmAstromObj **)a; + pmAstromObj *B = *(pmAstromObj **)b; + + psF32 diff = A->Mag - B->Mag; + if (diff > FLT_EPSILON) { + return (-1); + } + + if (diff < FLT_EPSILON) { + return (+1); + } + + return (0); +} + +/************************************************************************************************************/ +/* + * Working routine to match two lists (where x[12] are sorted), given psVectors of their coordinates and the + * permutation used to sort in x + */ +static psArray *match_lists(const psVector *x1, const psVector *y1, // x/y coordinates of first set of objects + const psVector *x2, const psVector *y2, // x/y " " " second " " " " + const psVector *sorted1, const psVector *sorted2, // mapping to original order + const double RADIUS) // matching radius +{ + psArray *matches = psArrayAllocEmpty(x1->n); + + const double RADIUS_SQR = PS_SQR(RADIUS); + double dX, dY, dR; + + int jStart; + int i = 0, j = 0; + while (i < x1->n && j < x2->n) { + dX = x1->data.F64[i] - x2->data.F64[j]; + if (dX <= -RADIUS) { + i++; + continue; + } + if (dX >= +RADIUS) { + j++; + continue; + } + + jStart = j; + while (fabs(dX) < RADIUS && j < x2->n) { + + dX = x1->data.F64[i] - x2->data.F64[j]; + dY = y1->data.F64[i] - y2->data.F64[j]; + dR = dX*dX + dY*dY; + + if (dR > RADIUS_SQR) { + j++; + continue; + } + + // got a match; add to output list + pmAstromMatch *match = pmAstromMatchAlloc (sorted1->data.S32[i], sorted2->data.S32[j]); + psArrayAdd (matches, 100, match); + psFree (match); + + j++; + } + j = jStart; + i++; + } + + return (matches); +} + +/************************************************************************************************************/ +// macro to generate code for radius match function based on desired member +// radius is in units of matching member (eg, pixels for chip, microns for FP, etc) +#define MAKE_ASTROM_RADIUS(FUNC, MEMBER) \ +psArray *FUNC( \ + const psArray *st1, \ + const psArray *st2, \ + double RADIUS) \ +{ \ + PS_ASSERT_PTR_NON_NULL(st1, NULL); \ + PS_ASSERT_PTR_NON_NULL(st2, NULL); \ + \ + assert(st1->n == 0 || pmIsAstromObj(st1->data[0])); \ + assert(st2->n == 0 || pmIsAstromObj(st2->data[0])); \ + \ + /* sort both lists by X coord; st1 first */ \ + psVector *x1 = psVectorAlloc(st1->n, PS_TYPE_F64); \ + for (int i = 0; i < st1->n; i++) { \ + x1->data.F64[i] = ((pmAstromObj *)st1->data[i])->MEMBER->x; \ + } \ + const psVector *sorted1 = psVectorSortIndex(NULL, x1); \ + assert (sorted1->type.type == PS_TYPE_S32); \ + \ + psVector *y1 = psVectorAlloc(st1->n, PS_TYPE_F64); \ + for (int i = 0; i < st1->n; i++) { \ + x1->data.F64[i] = ((pmAstromObj *)st1->data[sorted1->data.S32[i]])->MEMBER->x; \ + y1->data.F64[i] = ((pmAstromObj *)st1->data[sorted1->data.S32[i]])->MEMBER->y; \ + } \ + \ + /* now st2 */ \ + psVector *x2 = psVectorAlloc(st2->n, PS_TYPE_F64); \ + for (int i = 0; i < st2->n; i++) { \ + x2->data.F64[i] = ((pmAstromObj *)st2->data[i])->MEMBER->x; \ + } \ + const psVector *sorted2 = psVectorSortIndex(NULL, x2); \ + \ + psVector *y2 = psVectorAlloc(st2->n, PS_TYPE_F64); \ + for (int i = 0; i < st2->n; i++) { \ + x2->data.F64[i] = ((pmAstromObj *)st2->data[sorted2->data.S32[i]])->MEMBER->x; \ + y2->data.F64[i] = ((pmAstromObj *)st2->data[sorted2->data.S32[i]])->MEMBER->y; \ + } \ + /* Do the work */ \ + psArray *matches = match_lists(x1, y1, x2, y2, sorted1, sorted2, RADIUS); \ + \ + psFree((void *)sorted1); \ + psFree((void *)sorted2); \ + psFree(x1); \ + psFree(y1); \ + psFree(x2); \ + psFree(y2); \ + \ + psLogMsg (__func__, 3, "radius match: %ld pairs (radius: %f)\n", matches->n, RADIUS); \ + return (matches); \ +} + +/******************************************************************************/ +/* + * Match two lists of pmAstromObjs, based on the FP, TP, or chip coordinates + */ +MAKE_ASTROM_RADIUS(pmAstromRadiusMatch, FP) +MAKE_ASTROM_RADIUS(pmAstromRadiusMatchFP, FP) +MAKE_ASTROM_RADIUS(pmAstromRadiusMatchTP, TP) +MAKE_ASTROM_RADIUS(pmAstromRadiusMatchChip, chip) + +/****************************************************************************** +pmAstromMatchFit(map, raw, ref, match, stats): take two matched star lists +and fit a psPlaneTransform between them + ******************************************************************************/ +pmAstromFitResults *pmAstromMatchFit( + psPlaneTransform *map, + psArray *raw, + psArray *ref, + psArray *match, + psStats *stats) +{ + PS_ASSERT_PTR_NON_NULL(map, NULL); + PS_ASSERT_PTR_NON_NULL(raw, NULL); + PS_ASSERT_PTR_NON_NULL(ref, NULL); + PS_ASSERT_PTR_NON_NULL(match, NULL); + PS_ASSERT_PTR_NON_NULL(stats, NULL); + + // reassign values for clip fit + // XXX set wt based on mag error? + psVector *X = psVectorAlloc (match->n, PS_TYPE_F32); + psVector *Y = psVectorAlloc (match->n, PS_TYPE_F32); + psVector *x = psVectorAlloc (match->n, PS_TYPE_F32); + psVector *y = psVectorAlloc (match->n, PS_TYPE_F32); + psVector *wt = psVectorAlloc (match->n, PS_TYPE_F32); + // take the matched stars, first fit + for (int i = 0; i < match->n; i++) { + pmAstromMatch *pair = match->data[i]; + pmAstromObj *rawStar = raw->data[pair->raw]; + pmAstromObj *refStar = ref->data[pair->ref]; + + X->data.F32[i] = rawStar->chip->x; + Y->data.F32[i] = rawStar->chip->y; + + x->data.F32[i] = refStar->FP->x; + y->data.F32[i] = refStar->FP->y; + + wt->data.F32[i] = 1.0; + } + + // constant errors + psVector *mask = psVectorAlloc (match->n, PS_TYPE_U8); + psVectorInit (mask, 0); + + // the stats options supplied are used to perform the clip fitting + pmAstromFitResults *results = pmAstromFitResultsAlloc(); + results->xStats = psStatsAlloc (PS_STAT_NONE); + results->yStats = psStatsAlloc (PS_STAT_NONE); + *results->xStats = *stats; + *results->yStats = *stats; + results->xStats->clipIter = 1; + results->yStats->clipIter = 1; + + // fit chip-to-FPA transformation + // we run 'clipIter' cycles clipping in each of x and y, with only one iteration each + for (int i = 0; i < stats->clipIter; i++) { + psVectorClipFitPolynomial2D (map->x, results->xStats, mask, 0xff, x, wt, X, Y); + psTrace ("psModules.astrom", 3, "x resid: %f +/- %f (%ld of %ld)\n", results->xStats->clippedMean, results->xStats->clippedStdev, results->xStats->clippedNvalues, x->n); + + psVectorClipFitPolynomial2D (map->y, results->yStats, mask, 0xff, y, wt, X, Y); + psTrace ("psModules.astrom", 3, "y resid: %f +/- %f (%ld of %ld)\n", results->yStats->clippedMean, results->yStats->clippedStdev, results->yStats->clippedNvalues, y->n); + } + results->xStats->clipIter = stats->clipIter; + results->yStats->clipIter = stats->clipIter; + + psFree (x); + psFree (y); + psFree (X); + psFree (Y); + psFree (wt); + psFree (mask); + + return (results); +} + + +/****************************************************************************** +pmAstromRotateObj(old, center, angle): rotate the focal-plane coordinates +about the center coordinate angle specified in radians + ******************************************************************************/ +psArray *pmAstromRotateObj( + const psArray *old, + psPlane center, + double angle) +{ + PS_ASSERT_PTR_NON_NULL(old, NULL); + + double X, Y; + pmAstromObj *newObj; + const pmAstromObj *oldObj; + + psArray *new = psArrayAlloc (old->n); + double cs = cos(angle); + double sn = sin(angle); + double xCenter = center.x; + double yCenter = center.y; + + for (int i = 0; i < old->n; i++) { + + oldObj = (pmAstromObj *)old->data[i]; + newObj = pmAstromObjCopy (oldObj); + + X = oldObj->FP->x - xCenter; + Y = oldObj->FP->y - yCenter; + + newObj->FP->x = X*cs + Y*sn + xCenter; + newObj->FP->y = Y*cs - X*sn + yCenter; + + new->data[i] = newObj; + } + return (new); +} + +/****************************************************************************** +pmAstromStatsFree(stats) + ******************************************************************************/ +static void pmAstromStatsFree(pmAstromStats *stats) +{ + if (stats == NULL) + return; + return; +} + +/****************************************************************************** +pmAstromStatsAlloc() + ******************************************************************************/ +pmAstromStats *pmAstromStatsAlloc(void) +{ + pmAstromStats *stats = psAlloc (sizeof(pmAstromStats)); + psMemSetDeallocator (stats, (psFreeFunc)pmAstromStatsFree); + + // stats->center = {0, 0, 0, 0}; + // stats->offset = {0, 0, 0, 0}; + stats->angle = 0.0; + stats->minMetric = 0.0; + stats->minVar = 0.0; + stats->nMatch = 0; + stats->nTest = 0; + stats->nSigma = 0; + + return (stats); +} + +/****************************************************************************** +pmAstromFitResultsFree(stats) + ******************************************************************************/ +static void pmAstromFitResultsFree(pmAstromFitResults *results) +{ + if (results == NULL) + return; + psFree (results->xStats); + psFree (results->yStats); + return; +} + +/****************************************************************************** +pmAstromFitResultsAlloc() + ******************************************************************************/ +pmAstromFitResults *pmAstromFitResultsAlloc(void) +{ + pmAstromFitResults *results = psAlloc (sizeof(pmAstromFitResults)); + psMemSetDeallocator (results, (psFreeFunc)pmAstromFitResultsFree); + + results->xStats = NULL; + results->yStats = NULL; + results->nMatch = 0; + results->nSigma = 0; + + return (results); +} + +/****************************************************************************** +astromObjFree(obj) + ******************************************************************************/ +static void astromObjFree(pmAstromObj *obj) +{ + if (obj == NULL) { + return; + } + + psFree(obj->pix); + psFree(obj->cell); + psFree(obj->chip); + psFree(obj->FP); + psFree(obj->TP); + psFree(obj->sky); + + return; +} + + +/****************************************************************************** +pmAstromObjAlloc() + ******************************************************************************/ +pmAstromObj *pmAstromObjAlloc(void) +{ + pmAstromObj *obj = psAlloc (sizeof(pmAstromObj)); + psMemSetDeallocator (obj, (psFreeFunc)astromObjFree); + + obj->pix = psPlaneAlloc(); + obj->cell = psPlaneAlloc(); + obj->chip = psPlaneAlloc(); + obj->FP = psPlaneAlloc(); + obj->TP = psPlaneAlloc(); + obj->sky = psSphereAlloc(); + obj->Mag = 0; + obj->dMag = 0; + + return (obj); +} + +bool pmIsAstromObj(const psPtr ptr) +{ + return (psMemGetDeallocator(ptr) == (psFreeFunc)astromObjFree); +} + + + +/****************************************************************************** +pmAstromObjCopy(old) + ******************************************************************************/ +pmAstromObj *pmAstromObjCopy(const pmAstromObj *old) +{ + PS_ASSERT_PTR_NON_NULL(old, NULL); + pmAstromObj *obj = pmAstromObjAlloc(); + + *obj->pix = *old->pix; + *obj->cell = *old->cell; + *obj->chip = *old->chip; + *obj->FP = *old->FP; + *obj->TP = *old->TP; + *obj->sky = *old->sky; + obj->Mag = old->Mag; + obj->dMag = old->dMag; + + return(obj); +} + + +/****************************************************************************** + ******************************************************************************/ +static void pmAstromMatchFree (pmAstromMatch *match) +{ + if (match == NULL) + return; + return; +} + + +/****************************************************************************** + ******************************************************************************/ +pmAstromMatch *pmAstromMatchAlloc( + int raw, + int ref) +{ + pmAstromMatch *match = psAlloc (sizeof(pmAstromMatch)); + psMemSetDeallocator(match, (psFreeFunc) pmAstromMatchFree); + + match->raw = raw; + match->ref = ref; + + return (match); +} + + +static double maxOffpix; // maximum allowed offset between lists, in raw pixels +static double Scale; // grid pixel scale static +double Offset; // deltas to pixels +/****************************************************************************** +AstromGridBin(*dx, *dy, dX, dY): local function to convert x,y coords to grid +bins it requires the globals defined above. + + ******************************************************************************/ +static bool AstromGridBin( + int *dx, + int *dy, + double dX, + double dY) +{ + if (PM_ASTROMETRYOBJECTS_DEBUG) { + PS_ASSERT_PTR_NON_NULL(dx, false); + PS_ASSERT_PTR_NON_NULL(dy, false); + } + + if (fabs(dX) > maxOffpix) { + return false; + } + + if (fabs(dY) > maxOffpix) { + return false; + } + + *dx = dX / Scale + Offset; + *dy = dY / Scale + Offset; + return true; +} + + +/****************************************************************************** +pmAstromGridAngle(raw, ref, config): match the two lists using the binned +delta-delta max. + ******************************************************************************/ +pmAstromStats *pmAstromGridAngle( + const psArray *raw, + const psArray *ref, + const psMetadata *config) +{ + PS_ASSERT_PTR_NON_NULL(raw, NULL); + PS_ASSERT_PTR_NON_NULL(ref, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + + bool status; + int nPix; // size of matching grid + int nPixHalf; // half-size of matching grid + double dX, dY; // offset between a possible matched pair + int iX, iY; // corresponding grid bin + + const pmAstromObj *ob1, *ob2; // short-cut pointers to the objects + + pmAstromStats *stats = pmAstromStatsAlloc(); // output match statistics + + // max allowed offset in either X or Y directions + double gridOffset = psMetadataLookupF32 (&status, config, "PSASTRO.GRID.OFFSET"); + + // sampling scale of the grid + double gridScale = psMetadataLookupF32 (&status, config, "PSASTRO.GRID.SCALE"); + + // set the static scaling factors + nPixHalf = (int)(gridOffset / gridScale + 0.5); // half-grid + nPix = 2*nPixHalf + 1; // full grid width + + // these are globals used by p_pmAstromGridBin + maxOffpix = gridScale * (nPixHalf + 0.5); // max offset from true center + Offset = maxOffpix / gridScale; + Scale = gridScale; + + // images used as accumulators for the loop below + psImage *gridNP = psImageAlloc (nPix, nPix, PS_TYPE_U32); + psImage *gridDX = psImageAlloc (nPix, nPix, PS_TYPE_F32); + psImage *gridDY = psImageAlloc (nPix, nPix, PS_TYPE_F32); + psImage *gridD2 = psImageAlloc (nPix, nPix, PS_TYPE_F32); + psImageInit (gridNP, 0); + psImageInit (gridDX, 0); + psImageInit (gridDY, 0); + psImageInit (gridD2, 0); + + // short-cut names for grid images + psU32 **NP = gridNP->data.U32; + psF32 **DX = gridDX->data.F32; + psF32 **DY = gridDY->data.F32; + psF32 **D2 = gridD2->data.F32; + + // accumulate grids for focal plane (L,M) matches + for (int i = 0; i < raw->n; i++) { + ob1 = (pmAstromObj *)raw->data[i]; + for (int j = 0; j < ref->n; j++) { + ob2 = (pmAstromObj *)ref->data[j]; + dX = ob1->FP->x - ob2->FP->x; + dY = ob1->FP->y - ob2->FP->y; + + // fprintf (f, "dX,dY: %8.2f %8.2f : %8.2f %8.2f : %8.2f %8.2f\n", dX, dY, ob1->FP->x, ob2->FP->x, ob1->FP->y, ob2->FP->y); + // find bin coordinates for this delta-delta + if (!AstromGridBin (&iX, &iY, dX, dY)) { + continue; // matched pair is too far offset + } + + // accumulate bin stats + NP[iY][iX] ++; + DX[iY][iX] += dX; + DY[iY][iX] += dY; + D2[iY][iX] += PS_SQR(dX) + PS_SQR(dY); + } + } + + // now assess the grid images + { + double minMetric = 1e10; + double minVar = 1e10; + int minX = -1; + int minY = -1; + double metric, var; + + // find the max pixel + psStats *imStats = psStatsAlloc (PS_STAT_MAX | PS_STAT_MAX | PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + if (!psImageStats(imStats, gridNP, NULL, 0)) { + psError(PS_ERR_UNKNOWN, false, "Unable to get image statistics.\n"); + psFree(imStats); + psFree(gridNP); + psFree(gridDX); + psFree(gridDY); + psFree(gridD2); + psFree(stats); + return NULL; + } + + # if 0 + + char line[16]; + psFits *fits = psFitsOpen ("grid.image.fits", "w"); + psFitsWriteImage (fits, NULL, gridNP, 0, NULL); + psFitsClose (fits); + fprintf (stderr, "wrote grid image, press return to continue\n"); + fgets (line, 15, stdin); + # endif + + // only check bins with at least 1/2 of max bin + // XXX requiring at least 3 matches in bin + int minNpts = PS_MAX (0.5*imStats->max, 3); + psTrace("psModule.astrom.grid.angle", 5, "minNpts: %d, max: %d", minNpts, (int)(imStats->max)); + + // find the 'best' bin + for (int j = 0; j < gridNP->numRows; j++) + { + for (int i = 0; i < gridNP->numCols; i++) { + + if (NP[j][i] < minNpts) + continue; + + // this metric emphasizes a narrow peak with lots of sources over one with few. + var = fabs((D2[j][i]/NP[j][i]) - PS_SQR(DX[j][i]/NP[j][i]) - PS_SQR(DY[j][i]/NP[j][i])); + metric = var / PS_SQR(NP[j][i]) / PS_SQR(NP[j][i]); + + // fprintf (stderr, "try : %f %f (%d pts, %f var, %f met)\n", DX[j][i]/NP[j][i], DY[j][i]/NP[j][i], NP[j][i], var, metric); + + if (metric < minMetric) { + minMetric = metric; + minVar = var; + minX = i; + minY = j; + } + } + } + + // convert the bin to delta-delta + if ((minX < 0) || (minY < 0)) + { + // no valid matches found + stats->offset.x = 0; + stats->offset.y = 0; + stats->minMetric = minMetric; + stats->minVar = minVar; + stats->nMatch = 0; + } else + { + stats->offset.x = DX[minY][minX] / NP[minY][minX]; + stats->offset.y = DY[minY][minX] / NP[minY][minX]; + stats->minMetric = minMetric; + stats->minVar = minVar; + stats->nMatch = NP[minY][minX]; + } + + psFree (imStats); + // XXX EAM : This routine, and pmAstromGridMatch, need to handle failure cases better + } + + // sort the NP values and choose + psVector *listNP = psVectorAlloc (nPix*nPix, PS_TYPE_U32); + int n = 0; + for (int i = 0; i < nPix; i++) { + for (int j = 0; j < nPix; j++) { + listNP->data.U32[n] = gridNP->data.U32[j][i]; + n++; + } + } + psVector *sort = psVectorSort (NULL, listNP); + stats->nTest = sort->data.U32[sort->n - 5]; + stats->nSigma = (stats->nMatch - stats->nTest) / sqrt(stats->nTest); + + psFree (sort); + psFree (listNP); + psFree (gridNP); + psFree (gridDX); + psFree (gridDY); + psFree (gridD2); + return (stats); +} + + + +/****************************************************************************** +pmAstromGridMatch(*raw, *ref, *config): match two star lists. + ******************************************************************************/ + +pmAstromStats *pmAstromGridMatch(const psArray *raw, + const psArray *ref, + const psMetadata *config) +{ + PS_ASSERT_PTR_NON_NULL(raw, NULL); + PS_ASSERT_PTR_NON_NULL(ref, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + + bool status; + double xMin, xMax, yMin, yMax; + const pmAstromObj *obj; + psArray *rot; + + pmAstromStats *minStat = pmAstromStatsAlloc (); + pmAstromStats *newStat = NULL; + + psPlane center; + + // find center of the raw field (focal-plane coords) + xMin = yMin = +1e10; + xMax = yMax = -1e10; + for (int i = 0; i < raw->n; i++) { + obj = (pmAstromObj *)raw->data[i]; + xMin = PS_MIN (obj->FP->x, xMin); + xMax = PS_MAX (obj->FP->x, xMax); + yMin = PS_MIN (obj->FP->y, yMin); + yMax = PS_MAX (obj->FP->y, yMax); + } + center.x = 0.5*(xMin + xMax); + center.y = 0.5*(yMin + yMax); + + double minAngle = RAD_DEG*psMetadataLookupF32 (&status, config, "PSASTRO.GRID.MIN.ANGLE"); + double maxAngle = RAD_DEG*psMetadataLookupF32 (&status, config, "PSASTRO.GRID.MAX.ANGLE"); + double delAngle = RAD_DEG*psMetadataLookupF32 (&status, config, "PSASTRO.GRID.DEL.ANGLE"); + double minSigma = psMetadataLookupF32 (&status, config, "PSASTRO.GRID.MIN.SIGMA"); + + minStat->minMetric = 1e10; + for (double angle = minAngle; angle <= maxAngle; angle += delAngle) { + rot = pmAstromRotateObj (raw, center, angle); + newStat = pmAstromGridAngle (rot, ref, config); + newStat->angle = angle; + newStat->center = center; + + if (newStat->minMetric < minStat->minMetric) { + *minStat = *newStat; + psLogMsg ("psModule.astrom", 4, "grid test - offset: %7.2f,%7.2f @ %6.1f deg (%4d pts, %5.1f sig, %5.1f var, %6.3f log metric) *", + minStat->offset.x, minStat->offset.y, DEG_RAD*minStat->angle, minStat->nMatch, minStat->nSigma, minStat->minVar, log10(minStat->minMetric)); + } else { + psLogMsg ("psModule.astrom", 4, "grid test - offset: %7.2f,%7.2f @ %6.1f deg (%4d pts, %5.1f sig, %5.1f var, %6.3f log metric)", + newStat->offset.x, newStat->offset.y, DEG_RAD*newStat->angle, newStat->nMatch, newStat->nSigma, newStat->minVar, log10(newStat->minMetric)); + + } + psFree (newStat); + psFree (rot); + } + psLogMsg ("psModule.astrom.grid.match", 4, "grid best - offset: %7.2f,%7.2f @ %6.1f deg (%4d pts, %5.1f sig, %5.1f var, %6.3f log metric)", + minStat->offset.x, minStat->offset.y, DEG_RAD*minStat->angle, minStat->nMatch, minStat->nSigma, minStat->minVar, log10(minStat->minMetric)); + + // I need to decide if a solution is likely to be a good solution or just a mis-match + // one posibility: how significant is the peak relative to the 4th or 5th most significant pixel? + + if (minStat->nSigma < minSigma) { + psError(PS_ERR_UNKNOWN, true, "Failed to find a valid match (%f sigma for best)", minStat->nSigma); + return NULL; + } + return (minStat); +} + +/****************************************************************************** +pmAstromGridTweak(*raw, *ref, *recipe, stats): improve match for two star lists. + ******************************************************************************/ +pmAstromStats *pmAstromGridTweak( + psArray *raw, + psArray *ref, + psMetadata *recipe, + pmAstromStats *stats) +{ + bool status; + pmAstromObj *ob1, *ob2; // short-cut pointers to the objects + double dX, dY; // offset between a possible matched pair + psArray *rot; + int nBin, xBin, yBin; + + rot = pmAstromRotateObj (raw, stats->center, stats->angle); + + // sampling scale of the grid + double tweakScale = psMetadataLookupF32 (&status, recipe, "PSASTRO.TWEAK.SCALE"); + double tweakRange = psMetadataLookupF32 (&status, recipe, "PSASTRO.TWEAK.RANGE"); + double tweakSmooth = psMetadataLookupF32 (&status, recipe, "PSASTRO.TWEAK.SMOOTH"); + double tweakNsigma = psMetadataLookupF32 (&status, recipe, "PSASTRO.TWEAK.NSIGMA"); + + nBin = 2*tweakRange / tweakScale; + psVector *xHist = psVectorAlloc (nBin, PS_TYPE_F32); + psVector *yHist = psVectorAlloc (nBin, PS_TYPE_F32); + psVectorInit (xHist, 0); + psVectorInit (yHist, 0); + + // accumulate grids for focal plane (L,M) matches + for (int i = 0; i < rot->n; i++) { + ob1 = (pmAstromObj *)rot->data[i]; + for (int j = 0; j < ref->n; j++) { + ob2 = (pmAstromObj *)ref->data[j]; + dX = ob1->FP->x - ob2->FP->x - stats->offset.x; + dY = ob1->FP->y - ob2->FP->y - stats->offset.y; + + xBin = (dX + tweakRange) / tweakScale; + yBin = (dY + tweakRange) / tweakScale; + + if (xBin < 0) + continue; + if (yBin < 0) + continue; + if (xBin >= nBin) + continue; + if (yBin >= nBin) + continue; + + xHist->data.F32[xBin] += 1.0; + yHist->data.F32[yBin] += 1.0; + } + } + + // smooth histgram vector with gaussian of 1sigma = radius + psVectorSmooth(xHist, xHist, tweakSmooth, tweakNsigma); + psVectorSmooth(yHist, yHist, tweakSmooth, tweakNsigma); + + // select peak in x and in y + xBin = yBin = 0; + double xMax = 0; + double yMax = 0; + for (int i = 0; i < nBin; i++) { + if (xHist->data.F32[i] > xMax) { + xBin = i; + xMax = xHist->data.F32[i]; + } + if (yHist->data.F32[i] > yMax) { + yBin = i; + yMax = yHist->data.F32[i]; + } + } + double xPeak = xBin*tweakScale - tweakRange; + double yPeak = yBin*tweakScale - tweakRange; + psLogMsg (__func__, 3, "tweak peak by %f,%f\n", xPeak, yPeak); + + // adjust offset by peak center + pmAstromStats *tweak = pmAstromStatsAlloc(); + *tweak = *stats; + tweak->offset.x += xPeak; + tweak->offset.y += yPeak; + + psFree (rot); + psFree (xHist); + psFree (yHist); + + return tweak; +} + +/****************************************************************************** +pmAstromGridApply(*map, stat): apply the measured FPA offset and rotation +(stat) to the fpa astrom structures. + ******************************************************************************/ +psPlaneTransform *pmAstromGridApply( + psPlaneTransform *map, + pmAstromStats *stat) +{ + PS_ASSERT_PTR_NON_NULL(map, NULL); + PS_ASSERT_POLY_NON_NULL(map->x, NULL); + PS_ASSERT_POLY_NON_NULL(map->y, NULL); + + double cs = cos (stat->angle); + double sn = sin (stat->angle); + + double dx = (map->x->coeff[0][0] - stat->center.x); + double dy = (map->y->coeff[0][0] - stat->center.y); + + // new offset + map->x->coeff[0][0] = cs*dx + sn*dy - stat->offset.x + stat->center.x; + map->y->coeff[0][0] = -sn*dx + cs*dy - stat->offset.y + stat->center.y; + + // original rotation matrix + double pc1_1 = map->x->coeff[1][0]; + double pc1_2 = map->x->coeff[0][1]; + double pc2_1 = map->y->coeff[1][0]; + double pc2_2 = map->y->coeff[0][1]; + + // new rotation matrix + map->x->coeff[1][0] = +cs*pc1_1 + sn*pc2_1; + map->x->coeff[0][1] = +cs*pc1_2 + sn*pc2_2; + map->y->coeff[1][0] = -sn*pc1_1 + cs*pc2_1; + map->y->coeff[0][1] = -sn*pc1_2 + cs*pc2_2; + + return (map); +} + +/* Illustration of the grid bins + dX bin + -35:-25 -> 0 bin = dX / Scale + Offset + -25:-15 -> 1 Scale = 10 + -15:-05 -> 2 Offset = 3.5 + -05:+05 -> 3 nPix = 3 (maxOffset = 35 = (nPix + 0.5)*dXix + +05:+15 -> 4 dPix = 10 + +15:+25 -> 5 + +25:+35 -> 6 + + maxOffsetRequest = 30 + nPix = (int) (maxOffset / dPix + 0.5); + maxOffset = (nPix + 0.5)*Scale; +*/ + Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.h =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.h (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryObjects.h (revision 12167) @@ -0,0 +1,346 @@ +/* @file pmAstrometryObjects.h + * @brief basic matching of objects based on their astrometry. + * + * @author EAM, IfA + * + * @version $Revision: 1.15 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PM_ASTROMETRY_OBJECTS_H +#define PM_ASTROMETRY_OBJECTS_H + +/// @addtogroup Astrometry +/// @{ + +/* + * + * This structure specifies the coordinate of the detection in each of the + * four necessary coordinate frames: pix defines the position in the psReadout + * frame, FP defines the position in the Focal Plane frame, TP defines the + * position in the Tangent Plane frame, sky defines the position on the Celestial + * Sphere. In addition, a measurement of the brightness is given by the element + * Mag. Such a data structure should be used for both the raw and the reference + * stars. In astrometric processing, the raw detections will be projected using + * the best available information to each of these coordinate frames from the pix + * coordinates, while the reference detections will be projected to the other + * frames from the sky coordinates. + * + * XXX: There are more members here than in the SDRS. + * + */ +typedef struct +{ + psPlane *pix; ///< the position in the pmReadout frame + psPlane *cell; ///< the position in the pmCell frame + psPlane *chip; ///< the position in the pmChip frame + psPlane *FP; ///< the position in the pmFPA frame + psPlane *TP; ///< the position in the tangent plane + psSphere *sky; ///< the position on the Celestial Sphere. + double Mag; ///< object magnitude XXX what filter? + double dMag; ///< error on object magnitude +} +pmAstromObj; + +/* + * + * The pmAstromMatch structure defines the cross-correlation between two + * arrays. A single such data item specifies that item number pmAstromMatch.idx1 + * in the first list corresponds to pmAstromMatch.idx2 in the second list. + * + */ +typedef struct +{ + int raw; ///< What is this? + int ref; ///< What is this? +} +pmAstromMatch; + + +/* + * + * XXX: Not in SDRS. + * + */ +typedef struct +{ + psPlane center; ///< + psPlane offset; ///< + double angle; ///< + double minMetric; ///< + double minVar; ///< + int nMatch; ///< + int nTest; ///< + double nSigma; ///< +} +pmAstromStats; + +typedef struct +{ + psStats *xStats; + psStats *yStats; + int nMatch; ///< + double nSigma; ///< +} +pmAstromFitResults; + +/* + * + * If the two sets of coordinates are expected to agree very well (ie, the current best-guess + * astrometric solution is quite close to reality), perform a match based on a simple radius + * test. The following functions accept two sets of pmAstromObj sources and determines the + * matched objects between the two lists using coordinates of the desired depth (depending on + * the function). The input and reference sources must have been projected to the desired depth + * (eg, for Focal Plane coordinates, to pmAstromObj.FP). The specified radius must be in the + * units for the matching depth (chip: pixels, focal plane: microns, tangent plane: + * degrees. The output consists an array of pmAstromMatch values, defined above. + * + */ +psArray *pmAstromRadiusMatch( + const psArray *st1, + const psArray *st2, + double RADIUS +); +psArray *pmAstromRadiusMatchFP( + const psArray *st1, + const psArray *st2, + double RADIUS +); +psArray *pmAstromRadiusMatchTP( + const psArray *st1, + const psArray *st2, + double RADIUS +); +psArray *pmAstromRadiusMatchChip( + const psArray *st1, + const psArray *st2, + double RADIUS +); + + +pmAstromStats *pmAstromStatsAlloc(void); + +/* + * + * This function accepts an array of pmAstromObj objects and rotates them by + * the given angle about the given center coordinate pCenter,qCenter in the Focal + * Plane Array coordinates. + * + * XXX: This differs from the SDRS + * + */ +/* SDRS +psArray *pmAstromRotateObj( + psArray *old, + double angle, + double pCenter, + double qCenter +); +*/ +psArray *pmAstromRotateObj( + const psArray *old, + psPlane center, + double angle +); + + +/* + * + * If the two sets of coordinates are not known to agree well, but the + * relative scale and approximate relative rotation is known, then a much faster + * match can be found using pair-pair displacements. In such a case, the two + * lists can be considered as having the same coordinate system, with an unknown + * relative displacement. In this algorithm, all possible pair-wise differences + * between the source positions in the two lists are constructed and accumulated + * in a grid of possible offset values. The resulting grid is searched for a + * cluster representing the offset between the two input lists. This algorithm + * can only tolerate a small error in the relative scale or the relative rotation + * of the two coordinate lists. However, this process is naturally O(N2), and is + * thus advantageous over triangle matching in some circumstances. This process + * can be extended to allow a larger uncertainty in the relative rotation by + * allowing the procedure to scan over a range of rotations. We define the + * following function to apply this matching algorithm: + * + * XXX: In the SDRS, this function is a pointer. + * + */ +pmAstromStats *pmAstromGridMatch( + const psArray *st1, + const psArray *st2, + const psMetadata *config +); + +/****************************************************************************** +pmAstromGridTweak(*raw, *ref, *recipe, stats): improve match for two star lists. + ******************************************************************************/ +pmAstromStats *pmAstromGridTweak( + psArray *raw, + psArray *ref, + psMetadata *recipe, + pmAstromStats *stats); + +/* + * + * The result of a pmAstromGridMatch may be used to modify the astrometry + * transformation information for a pmFPA image hierarchy structure. The result + * of pmAstromGridMatch defines the adjustments which should be made to the + * reference coordinate of the projection (pmFPA.projection.R,D) and the + * effective rotation of the Focal Plane. The rotation implies modification of + * the linear terms of the pmFPA.toTangentPlane transformation. These two + * adjustments are made using the function: + * + * XXX: This function name is different in the SDRS. + * + */ +psPlaneTransform *pmAstromGridApply( + psPlaneTransform *map, + pmAstromStats *stat +); + + +/* + * + * This function is identical to pmAstromGridMatch, but is valid for only a + * single relative rotation. The input config information need not contain any of + * the GRID.*.ANGLE entries (they will be ignored). + * + * XXX: This function name is different in the SDRS. + * + */ +/* in pmAstromGrid.c */ +pmAstromStats *pmAstromGridAngle( + const psArray *st1, + const psArray *st2, + const psMetadata *config); + + + +/* + * + * This function accepts the raw and reference source lists and the list of + * matched entries. It uses the matched list to determine a polynomial + * transformation between the two coordinate systems. The fitting uses clipping + * to exclude outliers, likely representing poor matches. The config element must + * contain the information ASTROM.NSIGMA (specifying the number of sigma used in + * the clipping) and ASTROM.NCLIP (specifying the number of clipping iterations + * must be performed). The config element must also specify the order of the + * polynomial fit (keyword: ASTROM.ORDER). The result of this fit is a set of + * modifications of the components of the pmFPA.toTangentPlane transformation, + * and the modifications of the reference coordinate of the projection + * (pmFPA.projection.R,D) and the projection scale (pmFPA.projection.Xs,Ys). The + * modifications to pmFPA.toTangentPlane incorporate the rotation component of + * the linear terms and the higher-order terms of the polynomial fits. + * + * XXX: No prototype code. + * + */ +bool pmAstromFitFPA( + pmFPA *fpa, + psArray *st1, + psArray *st2, + psArray *match, + psMetadata *config +); + + + +/* + * + * This function accepts the raw and reference source lists for a single chip + * and the list of matched entries. It uses the matched list to determine a + * polynomial transformation between the two coordinate systems. The fitting + * uses clipping to exclude outliers, likely representing poor matches. The + * config element must contain the information ASTROM.NSIGMA + *(specifying the number of sigma used in the clipping) and ASTROM.NCLIP + *(specifying the number of clipping iterations must be performed). The config + *element must also specify the order of the polynomial fit (keyword: + *ASTROM.ORDER). The result of this fit is a set of modifications of the + *components of the pmChip.toFPA transformation. + * + * XXX: No prototype code. + * + */ +bool pmAstromFitChip( + pmFPA *fpa, + psArray *st1, + psArray *st2, + psArray *match, + psMetadata *config +); + + +/******************************************************************************* + The following functions and structs were in the prototype code, but not the + SDRS. + ******************************************************************************/ +/* + * + * + * + * + */ + +pmAstromFitResults *pmAstromFitResultsAlloc(void); + +/* + * + * Allocates a pmAstromObj struct. + * + */ +pmAstromObj *pmAstromObjAlloc (void); +/* + * Is a given pointer a pmAstromObj? + */ +bool pmIsAstromObj(const psPtr ptr); + + +/* + * + * Copies a pmAstromObj struct. + * + */ +pmAstromObj *pmAstromObjCopy( + const pmAstromObj *old +); + + + +/* + * + * + * + */ +pmAstromMatch *pmAstromMatchAlloc( + int i1, + int i2 +); + + + + +/* + * + * + * + */ +pmAstromFitResults *pmAstromMatchFit( + psPlaneTransform *map, + psArray *raw, + psArray *ref, + psArray *match, + psStats *stats +); + +/* + * + * + * + */ +int pmAstromObjSortByMag( + const void **a, + const void **b +); + +/// @} +#endif // PM_ASTROMETRY_OBJECTS_H Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.c =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.c (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.c (revision 12167) @@ -0,0 +1,339 @@ +/** @file pmAstrometryUtils.c + * + * @brief utility functions for transform and distort functions + * + * @ingroup Astrometry + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "pmFPA.h" +#include "pmAstrometryUtils.h" + +// given a 2D transformation -- L(x,y),M(x,y) -- find the coordinates x,y +// for which L,M = 0,0. tol is the allowed error on x,y. +psPlane *psPlaneTransformGetCenter (psPlaneTransform *trans, double tol) +{ + + // crpix1,2 = X,Y(crval1,2) + // start with linear solution for Xo,Yo: + double R = (trans->x->coeff[1][0]*trans->y->coeff[0][1] - trans->x->coeff[0][1]*trans->y->coeff[1][0]); + double Xo = (trans->y->coeff[0][0]*trans->x->coeff[0][1] - trans->x->coeff[0][0]*trans->y->coeff[0][1])/R; + double Yo = (trans->x->coeff[0][0]*trans->y->coeff[1][0] - trans->y->coeff[0][0]*trans->x->coeff[1][0])/R; + + // iterate to actual solution: requires small non-linear terms + if (trans->x->nX > 1) { + psPolynomial2D *XdX = psPolynomial2D_dX(NULL, trans->x); + psPolynomial2D *XdY = psPolynomial2D_dY(NULL, trans->x); + + psPolynomial2D *YdX = psPolynomial2D_dX(NULL, trans->y); + psPolynomial2D *YdY = psPolynomial2D_dY(NULL, trans->y); + + psImage *Alpha = psImageAlloc (2, 2, PS_DATA_F32); + psVector *Beta = psVectorAlloc (2, PS_DATA_F32); + + /* this loop uses the Newton-Raphson method to solve for Xo,Yo + * it needs the high order terms to be small + * Xo,Yo are in pixels; + */ + double dPos = tol + 1; + for (int i = 0; (dPos > tol) && (i < 20); i++) { + // NOTE: order for Alpha is: [y][x] + Alpha->data.F32[0][0] = psPolynomial2DEval (XdX, Xo, Yo); + Alpha->data.F32[1][0] = psPolynomial2DEval (XdY, Xo, Yo); + Alpha->data.F32[0][1] = psPolynomial2DEval (YdX, Xo, Yo); + Alpha->data.F32[1][1] = psPolynomial2DEval (YdY, Xo, Yo); + + Beta->data.F32[0] = psPolynomial2DEval (trans->x, Xo, Yo); + Beta->data.F32[1] = psPolynomial2DEval (trans->y, Xo, Yo); + + psMatrixGJSolveF32 (Alpha, Beta); + + Xo -= Beta->data.F32[0]; + Yo -= Beta->data.F32[1]; + dPos = hypot(Beta->data.F32[0], Beta->data.F32[1]); + } + psFree (Alpha); + psFree (Beta); + psFree (XdX); + psFree (XdY); + psFree (YdX); + psFree (YdY); + } + psPlane *center = psPlaneAlloc (); + center->x = Xo; + center->y = Yo; + + return center; +} + +// convert a transformation L(x,y) to L'(x-xo,y-yo) +psPlaneTransform *psPlaneTransformSetCenter (psPlaneTransform *output, psPlaneTransform *input, double Xo, double Yo) +{ + + // validate fit order + + if (output == NULL) { + output = psPlaneTransformAlloc(input->x->nX, input->x->nY); + } + + /* given two equivalent polynomial representations L(x,y) = \sum_i \sum_j A_{i,j} x^i y^j + * we can transform L(x,y) into L'(x-xo,y-yo) by taking the derivatives of both sides and + * noting that the constant term in each is the coefficient in the case of L(x,y) and is the + * value of L'(-xo,-yo) in the second case. + */ + + psPolynomial2D *tmp; + + psPolynomial2D *xPx = psPolynomial2DCopy (NULL, input->x); + psPolynomial2D *yPx = psPolynomial2DCopy (NULL, input->y); + + for (int i = 0; i <= input->x->nX; i++) { + psPolynomial2D *xPy = psPolynomial2DCopy (NULL, xPx); + psPolynomial2D *yPy = psPolynomial2DCopy (NULL, yPx); + for (int j = 0; j <= input->x->nY; j++) { + output->x->mask[i][j] = input->x->mask[i][j]; + output->y->mask[i][j] = input->y->mask[i][j]; + output->x->coeff[i][j] = (output->x->mask[i][j]) ? 0 : psPolynomial2DEval (xPy, Xo, Yo) / tgamma(i+1) / tgamma(j+1); + output->y->coeff[i][j] = (output->y->mask[i][j]) ? 0 : psPolynomial2DEval (yPy, Xo, Yo) / tgamma(i+1) / tgamma(j+1); + + // take the next derivative wrt y, catch output (is NULL on last pass) + tmp = psPolynomial2D_dY(NULL, xPy); + psFree (xPy); + xPy = tmp; + tmp = psPolynomial2D_dY(NULL, yPy); + psFree (yPy); + yPy = tmp; + } + // take the next derivative wrt x, catch output (is NULL on last pass) + tmp = psPolynomial2D_dX(NULL, xPx); + psFree (xPx); + xPx = tmp; + tmp = psPolynomial2D_dX(NULL, yPx); + psFree (yPx); + yPx = tmp; + } + return output; +} + +// construct a psPlaneTransform which is the identify transformation +psPlaneTransform *psPlaneTransformIdentity (int order) +{ + + psPlaneTransform *transform; + + if (order < 1) + psAbort("invalid order"); + if (order > 3) + psAbort("invalid order"); + + // all coeffs and masks initially set to 0 + transform = psPlaneTransformAlloc (order, order); + + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + transform->x->mask [i][j] = 1; + transform->y->mask [i][j] = 1; + } + } + } + transform->x->coeff[1][0] = 1; + transform->y->coeff[0][1] = 1; + transform->x->mask[1][0] = 0; + transform->y->mask[0][1] = 0; + + return transform; +} + +// check that the given psPlaneTransform is the identity * (Xs,Ys) +bool psPlaneTransformIsDiagonal (psPlaneTransform *transform) +{ + + int order; + bool status; + + // we currently only support up to 3rd order polynomials + if (transform->x->nX < 1) + return false; + if (transform->x->nY < 1) + return false; + if (transform->y->nX < 1) + return false; + if (transform->y->nY < 1) + return false; + + if (transform->x->nX != transform->x->nY) + return false; + if (transform->y->nX != transform->y->nY) + return false; + + // these are not actually valid tests + if (transform->x->nX > 3) + return false; + if (transform->x->nY > 3) + return false; + if (transform->y->nX > 3) + return false; + if (transform->y->nY > 3) + return false; + + status = true; + order = transform->x->nX; + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + // high-order cross terms must be masked (eg, x^3 y^2) + status &= transform->x->mask[i][j]; + } else { + status &= !transform->x->mask[i][j]; + if ((i == 1) && (i + j == 1)) { + // linear, diagonal terms must be non-zero + status &= (fabs(transform->x->coeff[i][j]) > FLT_EPSILON); + } else { + // non-linear and off-diagonal terms must be 0 (eg, x^2, x y) + status &= (fabs(transform->x->coeff[i][j]) < FLT_EPSILON); + } + } + } + } + + order = transform->y->nX; + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + // high-order cross terms must be masked (eg, x^3 y^2) + status &= transform->y->mask[i][j]; + } else { + status &= !transform->y->mask[i][j]; + if ((j == 1) && (i + j == 1)) { + // linear, diagonal terms must be 1.0 + status &= (fabs(transform->y->coeff[i][j]) > FLT_EPSILON); + } else { + // non-linear and off-diagonal terms must be 0 (eg, x^2, x y) + status &= (fabs(transform->y->coeff[i][j]) < FLT_EPSILON); + } + } + } + } + return status; +} + +// construct a psPlaneDistort which is the identify transformation +psPlaneDistort *psPlaneDistortIdentity (int order) +{ + + psPlaneDistort *distort; + + if (order < 1) + psAbort("invalid order"); + if (order > 3) + psAbort("invalid order"); + + // all coeffs and masks initially set to 0 + distort = psPlaneDistortAlloc (order, order, 0, 0); + + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + distort->x->mask [i][j][0][0] = 1; + distort->y->mask [i][j][0][0] = 1; + } + } + } + distort->x->coeff[1][0][0][0] = 1; + distort->y->coeff[0][1][0][0] = 1; + + return distort; +} + +// check that the given psPlaneDistort is the identity * (Xs,Ys) +bool psPlaneDistortIsDiagonal (psPlaneDistort *distort) +{ + + int order; + bool status; + + // we currently only support up to 3rd order polynomials + if (distort->x->nX < 1) + return false; + if (distort->x->nY < 1) + return false; + if (distort->y->nX < 1) + return false; + if (distort->y->nY < 1) + return false; + + if (distort->x->nX > 3) + return false; + if (distort->x->nY > 3) + return false; + if (distort->y->nX > 3) + return false; + if (distort->y->nY > 3) + return false; + + if (distort->x->nZ > 0) + return false; + if (distort->x->nT > 0) + return false; + if (distort->y->nZ > 0) + return false; + if (distort->y->nT > 0) + return false; + + if (distort->x->nX != distort->x->nY) + return false; + if (distort->y->nX != distort->y->nY) + return false; + + status = true; + order = distort->x->nX; + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + // high-order cross terms must be masked (eg, x^3 y^2) + status &= distort->x->mask[i][j][0][0]; + } else { + status &= !distort->x->mask[i][j][0][0]; + if ((i == 1) && (i + j == 1)) { + // linear, diagonal terms must be 1.0 + status &= (fabs(distort->x->coeff[i][j][0][0]) > FLT_EPSILON); + } else { + // non-linear and off-diagonal terms must be 0 (eg, x^2, x y) + status &= (fabs(distort->x->coeff[i][j][0][0]) < FLT_EPSILON); + } + } + } + } + + order = distort->y->nX; + for (int i = 0; i <= order; i++) { + for (int j = 0; j <= order; j++) { + if (i + j > order) { + // high-order cross terms must be masked (eg, x^3 y^2) + status &= distort->y->mask[i][j][0][0]; + } else { + status &= !distort->y->mask[i][j][0][0]; + if ((j == 1) && (i + j == 1)) { + // linear, diagonal terms must be 1.0 + status &= (fabs(distort->y->coeff[i][j][0][0]) > FLT_EPSILON); + } else { + // non-linear and off-diagonal terms must be 0 (eg, x^2, x y) + status &= (fabs(distort->y->coeff[i][j][0][0]) < FLT_EPSILON); + } + } + } + } + return status; +} Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.h =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.h (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryUtils.h (revision 12167) @@ -0,0 +1,27 @@ +/* @file pmAstrometryUtils.h + * @brief utility functions for transform and distort functions + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_ASTROMETRY_UTILS_H +#define PM_ASTROMETRY_UTILS_H + +/// @addtogroup Astrometry +/// @{ + +psPlane *psPlaneTransformGetCenter (psPlaneTransform *trans, double tol); +psPlaneTransform *psPlaneTransformSetCenter (psPlaneTransform *output, psPlaneTransform *input, double Xo, double Yo); + +psPlaneTransform *psPlaneTransformIdentity (int order); +psPlaneDistort *psPlaneDistortIdentity (int order); + +bool psPlaneTransformIsDiagonal (psPlaneTransform *transform); +bool psPlaneDistortIsDiagonal (psPlaneDistort *distort); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.c =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.c (revision 12167) @@ -0,0 +1,727 @@ +/** @file pmAstrometryWCS.c + * + * @brief functions to convert FITS WCS keywords to / from pmFPA structures + * + * @ingroup Astrometry + * + * @author EAM, IfA + * + * @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include "pmFPA.h" +#include "pmAstrometryWCS.h" +#include "pmAstrometryUtils.h" + +// the following functions support coordinate transformations direcly related to the FITS WCS +// keywords. The FITS WCS allows for only a single level of transformation, thus it is not +// appropriate for mosaic astrometry consisting of telescope distortion plus chip terms. +// Below, we support the Elixir convention of using two connected FITS headers to define two +// levels of coordinate transformation. In the pmFPA structure, the projection, distortion, +// and FPA-to-Chip transformations are carried independently. NOTE: The FITS WCS keywords do +// not represent a simple polynomial. Instead, they have no constant term, and the coordinates +// are corrected to a reference pixel before the polynomial transformation is applied. + +// interpret header WCS (only handles traditional WCS for the moment) +// pixelScale is microns per pixel +bool pmAstromReadWCS (pmFPA *fpa, pmChip *chip, const psMetadata *header, double pixelScale) +{ + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + if (!wcs) { + return false; + } + + bool status = pmAstromWCStoFPA (fpa, chip, wcs, pixelScale); + + psFree (wcs); + return status; +} + +// convert toFPA / toSky components to pmAstromWCS +// tolerance is convergence for inversion of non-linear terms in pixels +bool pmAstromWriteWCS (psMetadata *header, const pmFPA *fpa, const pmChip *chip, double tol) +{ + // XXX require chip->toFPA->x->nX == chip->toFPA->x->nY + // XXX require chip->toFPA->y->nX == chip->toFPA->y->nY + // XXX require chip->toFPA->x->nX == chip->toFPA->y->nX + // XXX require chip->toFPA->nX == 1,2,3 + + // technically, we can have a plate scale here (fpa->toTPA:dx,dy != 1) + if (!psPlaneTransformIsDiagonal (fpa->toTPA)) + psAbort("invalid TPA transformation"); + + pmAstromWCS *wcs = pmAstromWCSfromFPA(fpa, chip, tol); + pmAstromWCStoHeader (header, wcs); + + psFree (wcs); + return true; +} + +// interpret chip header WCS as bilevel chip components +bool pmAstromReadBilevelChip (pmChip *chip, const psMetadata *header) +{ + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + if (!wcs) { + return false; + } + + bool status = pmAstromWCSBileveltoChip (chip, wcs); + + psFree (wcs); + return status; +} + +// convert toFPA / toSky components to traditional WCS +bool pmAstromReadBilevelMosaic (pmFPA *fpa, const psMetadata *header) +{ + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + if (!wcs) { + return false; + } + + bool status = pmAstromWCSBileveltoFPA (fpa, wcs); + + psFree (wcs); + return status; +} + +// convert chip->toFPA components to bilevel WCS +bool pmAstromWriteBilevelChip (psMetadata *header, const pmChip *chip, double tol) +{ + pmAstromWCS *wcs = pmAstromWCSBilevelChipFromFPA (chip, tol); + + pmAstromWCStoHeader (header, wcs); + + psFree (wcs); + return true; +} + + +// convert fpa->toTPA, fpa->toSky components to bilevel WCS +bool pmAstromWriteBilevelMosaic (psMetadata *header, const pmFPA *fpa, double tol) +{ + pmAstromWCS *wcs = pmAstromWCSBilevelMosaicFromFPA (fpa, tol); + + pmAstromWCStoHeader (header, wcs); + + psFree (wcs); + return true; +} + +// convert coordinates from chip to sky using a pmAstromWCS structure +bool pmAstromWCStoSky (psSphere *sky, pmAstromWCS *wcs, psPlane *chip) +{ + + if (chip == NULL) + return false; + if (sky == NULL) + return false; + if (wcs == NULL) + return false; + + psPlane *Chip = psPlaneAlloc(); + psPlane *FP = psPlaneAlloc(); + + Chip->x = chip->x - wcs->crpix1; + Chip->y = chip->y - wcs->crpix2; + + psPlaneTransformApply (FP, wcs->trans, Chip); + psDeproject (sky, FP, wcs->toSky); // find the RA,DEC coord of the focal-plane coordinate + + psFree (Chip); + psFree (FP); + return true; +} + +// convert coordinates from sky to chip using a pmAstromWCS structure +bool pmAstromWCStoChip (psPlane *chip, pmAstromWCS *wcs, psSphere *sky) +{ + + if (chip == NULL) + return false; + if (sky == NULL) + return false; + if (wcs == NULL) + return false; + + psError(PS_ERR_UNKNOWN, true, "not yet implemented: needs to invert the transformation"); + return false; + + psPlane *Chip = psPlaneAlloc(); + psPlane *FP = psPlaneAlloc(); + + psProject (FP, sky, wcs->toSky); // find the RA,DEC coord of the focal-plane coordinate + + // I need the inverse of wcs->transform at this point + psPlaneTransformApply (Chip, wcs->trans, FP); + + chip->x = Chip->x + wcs->crpix1; + chip->y = Chip->y + wcs->crpix2; + + psFree (Chip); + psFree (FP); + return true; +} + +// interpret header WCS keywords (valid for bilevel and traditional WCS) +pmAstromWCS *pmAstromWCSfromHeader (const psMetadata *header) +{ + psProjectionType type; + bool status, pcKeys, cdKeys, isPoly; + char name[16]; // used to store FITS keyword below (always < 8, so 16 should be safe!) + + // interpret header data, convert to crval(i), etc + char *ctype = psMetadataLookupPtr (&status, header, "CTYPE2"); + if (!status) { + psLogMsg ("psastro", 2, "warning: no WCS metadata in header\n"); + return NULL; + } + + // determine projection type + // XXX there are two indications for higher-order terms: the type (DIS,WRP,PLY,ZPL) and + // the value of NPLYTERM. + type = psProjectTypeFromString (ctype); + if (type == PS_PROJ_NTYPE) { + psLogMsg ("psastro", 2, "warning: unknown projection type %s\n", ctype); + return NULL; + } + + // what type of WCS keywords are available? + // XXX add check for CROTA2 + int fitOrder = psMetadataLookupS32 (&isPoly, header, "NPLYTERM"); + psMetadataLookupF64 (&pcKeys, header, "PC001001"); + psMetadataLookupF64 (&cdKeys, header, "CD1_1"); + + if (cdKeys && pcKeys) { + // XXX make this an option + psLogMsg ("psastro", 2, "warning: both CDi_j and PC00i00j defined in headers, using PC00i00j terms\n"); + } + if (!cdKeys && !pcKeys) { + psError(PS_ERR_UNKNOWN, true, "missing both CDi_j and PC00i00j WCS terms"); + // XXX we could default here to RA, DEC, ROTANGLE + return NULL; + } + if (isPoly) { + if (!pcKeys) { + psError(PS_ERR_UNKNOWN, true, "polynomial terms defined, but missing PC00i00j WCS terms"); + return NULL; + } + if (fitOrder == 0) + fitOrder = 1; + if ((fitOrder > 3) || (fitOrder < 1)) { + psError(PS_ERR_UNKNOWN, true, "NPLYTERM value undefined: %d", fitOrder); + return NULL; + } + } else { + fitOrder = 1; + } + + pmAstromWCS *wcs = pmAstromWCSAlloc (fitOrder, fitOrder); + + // construct a transformation from X,Y in pixels to L,M in pixels + // NOTE that the WCS keywords convert X,Y to degrees first (using cdelt1,2) + // and then define a transformation from degrees to degrees + + wcs->crval1 = psMetadataLookupF64 (&status, header, "CRVAL1"); + wcs->crval2 = psMetadataLookupF64 (&status, header, "CRVAL2"); + wcs->crpix1 = psMetadataLookupF64 (&status, header, "CRPIX1"); + wcs->crpix2 = psMetadataLookupF64 (&status, header, "CRPIX2"); + wcs->toSky = psProjectionAlloc (wcs->crval1*PM_RAD_DEG, wcs->crval2*PM_RAD_DEG, PM_RAD_DEG, PM_RAD_DEG, type); + // XXX I think this is wrong for linear proj + + // test the CDELTi varient + if (pcKeys) { + wcs->cdelt1 = psMetadataLookupF64 (&status, header, "CDELT1"); + wcs->cdelt2 = psMetadataLookupF64 (&status, header, "CDELT2"); + + // test the CROTAi varient: + // XXX double check lambda.. + double rotate = psMetadataLookupF64 (&status, header, "CROTA2"); + if (status) { + wcs->trans->x->coeff[1][0] = +wcs->cdelt1 * cos(rotate*PM_RAD_DEG); // == PC1_1 + wcs->trans->x->coeff[0][1] = -wcs->cdelt2 * sin(rotate*PM_RAD_DEG); // == PC1_2 + wcs->trans->y->coeff[1][0] = +wcs->cdelt1 * sin(rotate*PM_RAD_DEG); // == PC2_1 + wcs->trans->y->coeff[0][1] = +wcs->cdelt2 * cos(rotate*PM_RAD_DEG); // == PC2_2 + return wcs; + } + + // FITS WCS PCi,j has units of unity + // wcs->trans has units of degrees/pixel + wcs->trans->x->coeff[1][0] = wcs->cdelt1 * psMetadataLookupF64 (&status, header, "PC001001"); // == PC1_1 + wcs->trans->x->coeff[0][1] = wcs->cdelt2 * psMetadataLookupF64 (&status, header, "PC001002"); // == PC1_2 + wcs->trans->y->coeff[1][0] = wcs->cdelt1 * psMetadataLookupF64 (&status, header, "PC002001"); // == PC2_1 + wcs->trans->y->coeff[0][1] = wcs->cdelt2 * psMetadataLookupF64 (&status, header, "PC002002"); // == PC2_2 + + if (isPoly) { + // Elixir-style polynomial terms + // XXX currently, Elixir/DVO cannot accept mixed orders + for (int i = 0; i <= fitOrder; i++) { + for (int j = 0; j <= fitOrder; j++) { + if (i + j < 2) + continue; + if (i + j > fitOrder) { + wcs->trans->x->mask[i][j] = 1; + wcs->trans->y->mask[i][j] = 1; + continue; + } + sprintf (name, "PCA1X%1dY%1d", i, j); + wcs->trans->x->coeff[i][j] = pow(wcs->cdelt1, i) * pow(wcs->cdelt2, j) * psMetadataLookupF64 (&status, header, name); + sprintf (name, "PCA2X%1dY%1d", i, j); + wcs->trans->y->coeff[i][j] = pow(wcs->cdelt1, i) * pow(wcs->cdelt2, j) * psMetadataLookupF64 (&status, header, name); + } + } + } + return wcs; + } + + // test the CDi_j varient + if (cdKeys) { + wcs->trans->x->coeff[1][0] = psMetadataLookupF64 (&status, header, "CD1_1"); // == PC1_1 + wcs->trans->x->coeff[0][1] = psMetadataLookupF64 (&status, header, "CD1_2"); // == PC1_2 + wcs->trans->y->coeff[1][0] = psMetadataLookupF64 (&status, header, "CD2_1"); // == PC2_1 + wcs->trans->y->coeff[0][1] = psMetadataLookupF64 (&status, header, "CD2_2"); // == PC2_2 + wcs->cdelt1 = hypot (wcs->trans->x->coeff[1][0], wcs->trans->x->coeff[0][1]); + wcs->cdelt2 = hypot (wcs->trans->y->coeff[1][0], wcs->trans->y->coeff[0][1]); + return wcs; + } + psLogMsg ("psastro", 2, "warning: missing rotation matrix?\n"); + psFree (wcs); + return NULL; +} + +// convert wcs transformations into header WCS keywords (only handles traditional WCS for the moment) +// wcs->trans defines the transformation from pixels to degrees. +// wcs->cdelt1,2 carries the original pixels scale. +// XXX force PC00i00j to be normalized, or use cdelt1,2 to set the scale? +// here I've chosen to force the rotation matrix to be normalized +bool pmAstromWCStoHeader (psMetadata *header, const pmAstromWCS *wcs) +{ + char name[16]; // used to store FITS keyword below (always < 8, so 16 should be safe!) + char *type; + + type = psProjectTypeToString (wcs->toSky->type, "RA--"); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", type); + psFree (type); + + type = psProjectTypeToString (wcs->toSky->type, "DEC-"); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", type); + psFree (type); + + psMetadataAddF64 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", wcs->toSky->R*PM_DEG_RAD); + psMetadataAddF64 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", wcs->toSky->D*PM_DEG_RAD); + + psMetadataAddF64 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", wcs->crpix1); + psMetadataAddF64 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", wcs->crpix2); + + // XXX make it optional to write out CDi_j terms, or other versions + // apply CDELT1,2 (degrees / pixel) to yield PCi,j terms of order unity + double cdelt1 = wcs->cdelt1; + double cdelt2 = wcs->cdelt2; + psMetadataAddF64 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", cdelt1); + psMetadataAddF64 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", cdelt2); + + // test the PC00i00j varient: + psMetadataAddF64 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", wcs->trans->x->coeff[1][0] / cdelt1); // == PC1_1 + psMetadataAddF64 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", wcs->trans->x->coeff[0][1] / cdelt2); // == PC1_2 + psMetadataAddF64 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", wcs->trans->y->coeff[1][0] / cdelt1); // == PC2_1 + psMetadataAddF64 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", wcs->trans->y->coeff[0][1] / cdelt2); // == PC2_2 + + // Elixir-style polynomial terms + // XXX currently, Elixir/DVO cannot accept mixed orders + // XXX need to respect the masks + // XXX is wcs->cdelt1,2 always consistent? + int fitOrder = wcs->trans->x->nX; + if (fitOrder > 1) { + for (int i = 0; i <= fitOrder; i++) { + for (int j = 0; j <= fitOrder; j++) { + if (i + j < 2) + continue; + if (i + j > fitOrder) + continue; + sprintf (name, "PCA1X%1dY%1d", i, j); + psMetadataAddF64 (header, PS_LIST_TAIL, name, PS_META_REPLACE, "", wcs->trans->x->coeff[i][j] / pow(cdelt1, i) / pow(cdelt2, j)); + sprintf (name, "PCA2X%1dY%1d", i, j); + psMetadataAddF64 (header, PS_LIST_TAIL, name, PS_META_REPLACE, "", wcs->trans->y->coeff[i][j] / pow(cdelt1, i) / pow(cdelt2, j)); + } + } + psMetadataAddS32 (header, PS_LIST_TAIL, "NPLYTERM", PS_META_REPLACE, "", fitOrder); + } + + return (true); +} + +// interpret header WCS (only handles traditional WCS for the moment) +// pixelScale is the pixel size in microns/pixel +bool pmAstromWCStoFPA (pmFPA *fpa, pmChip *chip, const pmAstromWCS *wcs, double pixelScale) +{ + psPlaneTransform *toFPA; + + // create transformation with 0,0 reference pixel and units of degrees/pixel + toFPA = psPlaneTransformSetCenter (NULL, wcs->trans, -wcs->crpix1, -wcs->crpix2); + + // modify scale of toFPA to have units of microns/pixel + // cdelt1,2 has units of degree/pixel + for (int i = 0; i <= toFPA->x->nX; i++) { + for (int j = 0; j <= toFPA->x->nX; j++) { + toFPA->x->coeff[i][j] *= pixelScale/wcs->cdelt1; + toFPA->y->coeff[i][j] *= pixelScale/wcs->cdelt2; + } + } + + // pdelt1,2 has units of degree/micron + double pdelt1 = wcs->cdelt1 / pixelScale; + double pdelt2 = wcs->cdelt2 / pixelScale; + + // projection from TPA (linear microns) to SKY (radians) + psProjection *toSky = psProjectionAlloc (wcs->toSky->R, wcs->toSky->D, PM_RAD_DEG*pdelt1, PM_RAD_DEG*pdelt2, wcs->toSky->type); + + if (fpa->toSky == NULL) { + fpa->toTPA = psPlaneTransformIdentity (1); + fpa->fromTPA = psPlaneTransformIdentity (1); + fpa->toSky = toSky; + } else { + + // this section allows the loaded chip to be included in an fpa structure in which + // other chips have already been loaded (ie, the fpa->toTPA, fpa->toSky components have + // already been defined). we have to adjust to match the existing transformation. + + if (fpa->toTPA == NULL) + psAbort("projection defined, tangent-plane not defined"); + if (fpa->fromTPA == NULL) + psAbort("projection defined, tangent-plane not defined"); + + // convert from pixels on this chip to pixels on reference chip + // rX has units of refpixels / pixel + double rX = toSky->Xs / fpa->toSky->Xs; + double rY = toSky->Ys / fpa->toSky->Ys; + for (int i = 0; i <= fpa->toTPA->x->nX; i++) { + for (int j = 0; j <= fpa->toTPA->x->nY; j++) { + toFPA->x->coeff[i][j] *= rX; + toFPA->y->coeff[i][j] *= rY; + } + } + + // adjust for common toSky, toTPA for mosaic: + // find the FPA coordinate of 0,0 for this chip. + psPlane *chip = psPlaneAlloc(); + psPlane *fp = psPlaneAlloc(); + psPlane *tp = psPlaneAlloc(); + psSphere *sky = psSphereAlloc(); + chip->x = chip->y = 0; + + psPlaneTransformApply (fp, toFPA, chip); // find the focal-plane coordinate of this chip's 0,0 coordinate + psPlaneTransformApply (tp, fpa->toTPA, fp); + psDeproject (sky, tp, toSky); // find the RA,DEC coord of the focal-plane coordinate + psProject (tp, sky, fpa->toSky); // find the focal-plane coord of this RA,DEC coord using the ref chip projection + psPlaneTransformApply (fp, fpa->fromTPA, tp); + + toFPA->x->coeff[0][0] = fp->x; + toFPA->y->coeff[0][0] = fp->y; + + psFree (sky); + psFree (tp); + psFree (fp); + psFree (chip); + psFree (toSky); + } + + // free an existing toFPA structure + chip->toFPA = toFPA; + // XXX this needs to perform the full (non-linear) inversion + // XXX we need to pull the region from the chip metadata + // is chip trimsec defined? do we need to ensure the + // XXX should this function be defined for the CELL, not the CHIP? + // psRegion region = psMetadataLookupXXX (chip->concepts, "CHIP.TRIMSEC"); + psRegion region = psRegionSet (0, 4000, 0, 4000); + chip->fromFPA = psPlaneTransformInvert(NULL, toFPA, region, 50); + + // this can take a very long time... + while (fpa->toSky->R < 0) + fpa->toSky->R += 2.0*M_PI; + while (fpa->toSky->R > 2.0*M_PI) + fpa->toSky->R -= 2.0*M_PI; + + psTrace ("psastro", 5, "toFPA: %f %f (%f,%f),(%f,%f)\n", + chip->toFPA->x->coeff[0][0], chip->toFPA->y->coeff[0][0], + chip->toFPA->x->coeff[1][0], chip->toFPA->x->coeff[0][1], + chip->toFPA->y->coeff[1][0], chip->toFPA->y->coeff[0][1]); + + psTrace ("psastro", 5, "frFPA: %f %f (%f,%f),(%f,%f)\n", + chip->fromFPA->x->coeff[0][0], chip->fromFPA->y->coeff[0][0], + chip->fromFPA->x->coeff[1][0], chip->fromFPA->x->coeff[0][1], + chip->fromFPA->y->coeff[1][0], chip->fromFPA->y->coeff[0][1]); + + return true; +} + +// convert a pmAstromWCS structure representing a bilevel chip into corresponding chip elements +bool pmAstromWCSBileveltoChip (pmChip *chip, const pmAstromWCS *wcs) +{ + /* we convert wcs->trans to toFPA, which is different from wcs->trans in 3 important ways: + * 1) the output is in pixel (not degrees): divide by cdelt1,2 raised to an appropriate power + * 2) X,Y are applied directly, without an applied Xo,Yo offset + * 3) there is an allowed Lo,Mo term ([0][0] coefficients) + */ + + // create transformation with 0,0 reference pixel and units of microns/pixel + chip->toFPA = psPlaneTransformSetCenter (NULL, wcs->trans, -wcs->crpix1, -wcs->crpix2); + + // XXX this needs to perform the full (non-linear) inversion + // XXX we need to pull the region from the chip metadata + // is chip trimsec defined? do we need to ensure the + // XXX should this function be defined for the CELL, not the CHIP? + // psRegion region = psMetadataLookupXXX (chip->concepts, "CHIP.TRIMSEC"); + psRegion region = psRegionSet (0, 4000, 0, 4000); + chip->fromFPA = psPlaneTransformInvert(NULL, chip->toFPA, region, 50); + + return true; +} + +// convert a pmAstromWCS structure representing a bilevel mosaic into corresponding fpa elements +bool pmAstromWCSBileveltoFPA (pmFPA *fpa, const pmAstromWCS *wcs) +{ + // projection from TPA (microns) to SKY (radians) + // cdelt1,2 has units of degrees/micron + fpa->toSky = psProjectionAlloc (wcs->toSky->R, wcs->toSky->D, wcs->cdelt1*PM_RAD_DEG, wcs->cdelt2*PM_RAD_DEG, wcs->toSky->type); + + // create transformation with 0,0 reference pixel + fpa->toTPA = psPlaneTransformSetCenter (NULL, wcs->trans, -wcs->crpix1, -wcs->crpix2); + + // convert fpa->toTPA to units of unity (microns/micron) + for (int i = 0; i <= fpa->toTPA->x->nX; i++) { + for (int j = 0; j <= fpa->toTPA->x->nY; j++) { + fpa->toTPA->x->coeff[i][j] /= wcs->cdelt1; + fpa->toTPA->y->coeff[i][j] /= wcs->cdelt2; + } + } + + // XXX this needs to perform the full (non-linear) inversion + // XXX we need to pull the region from the chip metadata + // is chip trimsec defined? do we need to ensure the + // XXX should this function be defined for the CELL, not the CHIP? + // psRegion region = psMetadataLookupXXX (chip->concepts, "CHIP.TRIMSEC"); + psRegion region = psRegionSet (0, 4000, 0, 4000); + fpa->fromTPA = psPlaneTransformInvert(NULL, fpa->toTPA, region, 50); + + return true; +} + +// convert toFPA / toSky components to pmAstromWCS +// tolerance is allowed error in center solution in pixels +pmAstromWCS *pmAstromWCSfromFPA (const pmFPA *fpa, const pmChip *chip, double tol) +{ + + // technically, we can have a plate scale here (fpa->toTPA:dx,dy != 1) + // XXX not really: toTPA needs to have unity scale for distortion fitting function + if (!psPlaneTransformIsDiagonal (fpa->toTPA)) + psAbort("invalid TPA transformation"); + + // XXX require chip->toFPA->x->nX == chip->toFPA->x->nY + // XXX require chip->toFPA->y->nX == chip->toFPA->y->nY + // XXX require chip->toFPA->x->nX == chip->toFPA->y->nX + // XXX require chip->toFPA->nX == 1,2,3 + + pmAstromWCS *wcs = pmAstromWCSAlloc(chip->toFPA->x->nX, chip->toFPA->x->nY); + + // convert projection from FPA to SKY into wcs projection (degrees to radians) + wcs->toSky = psProjectionAlloc (fpa->toSky->R, fpa->toSky->D, PM_RAD_DEG, PM_RAD_DEG, fpa->toSky->type); + wcs->crval1 = fpa->toSky->R*PM_DEG_RAD; + wcs->crval2 = fpa->toSky->D*PM_DEG_RAD; + + // given transformation, solve for coordinates which yields output coordinates of 0,0 + psPlane *center = psPlaneTransformGetCenter (chip->toFPA, tol); + + // create wcs transform from toFPA, resulting transformation has units of microns/pixel + // adjust wcs transform to use center as reference coordinate + psPlaneTransformSetCenter (wcs->trans, chip->toFPA, center->x, center->y); + + // calculated center is crpix1,2 + wcs->crpix1 = center->x; + wcs->crpix2 = center->y; + psFree (center); + + // pdelt1,2 has units of degrees/micron + double pdelt1 = fpa->toSky->Xs * PM_DEG_RAD; + double pdelt2 = fpa->toSky->Ys * PM_DEG_RAD; + + // convert wcs->trans to a matrix with units of degrees/pixel + for (int i = 0; i <= wcs->trans->x->nX; i++) { + for (int j = 0; j <= wcs->trans->x->nY; j++) { + wcs->trans->x->coeff[i][j] *= pdelt1; + wcs->trans->y->coeff[i][j] *= pdelt2; + } + } + + // cdelt1,2 has units of degrees/pixel + wcs->cdelt1 = hypot (wcs->trans->x->coeff[1][0], wcs->trans->x->coeff[0][1]); + wcs->cdelt2 = hypot (wcs->trans->y->coeff[1][0], wcs->trans->y->coeff[0][1]); + + return wcs; +} + +/* the bilevel astrometry description consists of a polynomial warping from + chip coordinates to FPA coordinates (coords->ctype = LIN---WRP), followed + by a polynomial representation of the telescope distortion + the projection + (coords->ctype = RA---DIS). +*/ + +// convert the chip-level toFPA to a wcs polynomial transformation +pmAstromWCS *pmAstromWCSBilevelChipFromFPA (const pmChip *chip, double tol) +{ + // XXX require chip->toFPA->x->nX == chip->toFPA->x->nY + // XXX require chip->toFPA->y->nX == chip->toFPA->y->nY + // XXX require chip->toFPA->x->nX == chip->toFPA->y->nX + // XXX require chip->toFPA->nX == 1,2,3 + + // convert chip->toFPA to wcs format (WRP) + pmAstromWCS *wcs = pmAstromWCSAlloc(chip->toFPA->x->nX, chip->toFPA->x->nY); + + // Chip to FPA transformation is a Cartesian 'projection' + // reference pixel for FPA is 0.0, 0.0 + wcs->toSky = psProjectionAlloc (0.0, 0.0, 1.0, 1.0, PS_PROJ_WRP); + wcs->crval1 = 0.0; + wcs->crval2 = 0.0; + + // given transformation, solve for coordinates which yields output coordinates of 0,0 + psPlane *center = psPlaneTransformGetCenter (chip->toFPA, tol); + + // adjust wcs transform to use center as reference coordinate + // resulting transformation has units of microns/pixel + psPlaneTransformSetCenter (wcs->trans, chip->toFPA, center->x, center->y); + + // calculated center is crpix1,2 + wcs->crpix1 = center->x; + wcs->crpix2 = center->y; + psFree (center); + + // output coordinates are in microns : CDELT1,2 has units of microns/pixel + wcs->cdelt1 = hypot (wcs->trans->x->coeff[1][0], wcs->trans->x->coeff[0][1]); + wcs->cdelt2 = hypot (wcs->trans->y->coeff[1][0], wcs->trans->y->coeff[0][1]); + + return wcs; +} + +// convert the fpa-level toTPA, toSky to a wcs polynomial transformation +pmAstromWCS *pmAstromWCSBilevelMosaicFromFPA (const pmFPA *fpa, double tol) +{ + // XXX require fpa->toTPA->x->nX == fpa->toTPA->x->nY + // XXX require fpa->toTPA->y->nX == fpa->toTPA->y->nY + // XXX require fpa->toTPA->x->nX == fpa->toTPA->y->nX + // XXX require fpa->toTPA->nX == 1,2,3 + // XXX require fpa->toSky->type == PS_PROJ_TAN + + // convert fpa->toTPA + fpa->toSky to wcs format (DIS) + pmAstromWCS *wcs = pmAstromWCSAlloc(fpa->toTPA->x->nX, fpa->toTPA->x->nY); + + // convert projection from TPA to SKY into wcs projection (degrees to radians) + wcs->toSky = psProjectionAlloc (fpa->toSky->R, fpa->toSky->D, PM_RAD_DEG, PM_RAD_DEG, PS_PROJ_DIS); + wcs->crval1 = fpa->toSky->R*PM_DEG_RAD; + wcs->crval2 = fpa->toSky->D*PM_DEG_RAD; + + // given transformation, solve for coordinates which yields output coordinates of 0,0 + psPlane *center = psPlaneTransformGetCenter (fpa->toTPA, tol); + + // adjust wcs transform to use center as reference coordinate + // resulting transformation has units of unity (microns/micron) + psPlaneTransformSetCenter (wcs->trans, fpa->toTPA, center->x, center->y); + + // calculated center is crpix1,2 + wcs->crpix1 = center->x; + wcs->crpix2 = center->y; + psFree (center); + + // pdelt1,2 has units of degrees/micron + double pdelt1 = fpa->toSky->Xs * PM_DEG_RAD; + double pdelt2 = fpa->toSky->Ys * PM_DEG_RAD; + + // convert wcs->trans to units of degree/micron + for (int i = 0; i <= wcs->trans->x->nX; i++) { + for (int j = 0; j <= wcs->trans->x->nY; j++) { + wcs->trans->x->coeff[i][j] *= pdelt1; + wcs->trans->y->coeff[i][j] *= pdelt2; + } + } + + // cdelt1,2 has units of degrees/micron + wcs->cdelt1 = hypot (wcs->trans->x->coeff[1][0], wcs->trans->x->coeff[0][1]); + wcs->cdelt2 = hypot (wcs->trans->y->coeff[1][0], wcs->trans->y->coeff[0][1]); + + return wcs; +} + +static void pmAstromWCSFree (pmAstromWCS *wcs) +{ + + if (!wcs) + return; + psFree (wcs->trans); + psFree (wcs->toSky); +} + +pmAstromWCS *pmAstromWCSAlloc (int nXorder, int nYorder) +{ + + pmAstromWCS *wcs = (pmAstromWCS *) psAlloc(sizeof(pmAstromWCS)); + psMemSetDeallocator(wcs, (psFreeFunc) pmAstromWCSFree); + + wcs->trans = psPlaneTransformAlloc (nXorder, nYorder); + wcs->toSky = NULL; + + memset (wcs->ctype1, 0, PM_ASTROM_WCS_TYPE_SIZE); + memset (wcs->ctype2, 0, PM_ASTROM_WCS_TYPE_SIZE); + return wcs; +} + +/***** + +For mosaic astrometry, we need to have a starting set of projection terms in which the +chip-to-FPA terms result in a fixed physical unit on the focal plane (eg, pixels or +microns). This set of projections, coupled with an identity toTPA (ie, no distortion) will +result in substantial errors between the observed and predicted star positions on the focal +plane: this is the measurement of the optical distortion in the camera. At the same time, +we need to carry around the transformations which allow us to make an accurate calculation +of the position of the stars based on the input (per-chip) astrometry. These +transformations will allow us to match the raw and ref stars robustly. To convert the +per-chip astrometry (which may have been calculated with a different plate scale for each +chip) to a collection of astrometry terms for chips in a single mosaic, we need to adjust +the chip-to-FPA scaling (eg, pc11) to match the variations in the effective plate scale for +each chip (eg, cdelt1). Thus, we need to carry around both the + +*****/ + +/* discussion of the coord transformations: + X,Y: coord on a chip in pixels + L,M: coord on the focal plane (pixels) + P,Q: coord in the tangent plane (microns or mm?) + R,D: coord on the sky + + this function creates WCS terms which convert directly from chip to sky. + this function requires a linear, unrotated toTPA distortion term + toTPA->x,y->coeff[1][0],[0][1] defines the detector scale (microns / pixel) + tpSky->Xs,Ys defines the plate scale (radians / micron) +*/ + +/* at this point, we have extracted from the header the WCS terms in the form of a polynomial, + * wcs->trans, which will convert X,Y in pixels to L,M in degrees. we also have the following + * elements defined: + * type (projection type) + * crval1,2 (in RA,DEC degrees) + * crpix1,2 + * cdelt1,2 (in degrees / pixel) + * pixelScale (microns / pixel) + * + * now we convert wcs->trans to toFPA, which is different from wcs->trans in 3 important ways: + * 1) the output is in microns (not degrees): divide by cdelt1,2 + * 2) X,Y are applied directly, without an applied Xo,Yo offset + * 3) there is an allowed Lo,Mo term ([0][0] coefficients) + */ + Index: /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.h =================================================================== --- /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.h (revision 12167) +++ /branches/rel-1-1/psModules/src/astrom/pmAstrometryWCS.h (revision 12167) @@ -0,0 +1,77 @@ +/* @file pmAstrometryDistortion.h + * @brief functions to convert FITS WCS keywords to / from pmFPA structures + * + * @author EAM, IfA + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_ASTROMETRY_WCS_H +#define PM_ASTROMETRY_WCS_H + +/// @addtogroup Astrometry +/// @{ + +#define PM_ASTROM_WCS_TYPE_SIZE 80 +typedef struct +{ + char ctype1[PM_ASTROM_WCS_TYPE_SIZE]; + char ctype2[PM_ASTROM_WCS_TYPE_SIZE]; + double crval1, crval2; + double crpix1, crpix2; + double cdelt1, cdelt2; + psProjection *toSky; + psPlaneTransform *trans; +} +pmAstromWCS; + +// support function for the pmAstromWCS representation +pmAstromWCS *pmAstromWCSAlloc (int nXorder, int nYorder); +bool pmAstromWCStoSky (psSphere *sky, pmAstromWCS *wcs, psPlane *chip); +bool pmAstromWCStoChip (psPlane *chip, pmAstromWCS *wcs, psSphere *sky); + +// read and write the pmAstromWCS representation to the header +bool pmAstromWCStoHeader (psMetadata *header, const pmAstromWCS *wcs); +pmAstromWCS *pmAstromWCSfromHeader (const psMetadata *header); + +// convert from wcs terms to chip->toFPA, fpa->toSky,toTPA terms +bool pmAstromWCSBileveltoChip (pmChip *chip, const pmAstromWCS *wcs); +bool pmAstromWCSBileveltoFPA (pmFPA *fpa, const pmAstromWCS *wcs); + +// convert from chip->toFPA, fpa->toSky,toTPA terms to wcs terms +pmAstromWCS *pmAstromWCSBilevelChipFromFPA (const pmChip *chip, double tol); +pmAstromWCS *pmAstromWCSBilevelMosaicFromFPA (const pmFPA *fpa, double tol); + +// convert the pmAstromWCS representation to the FPA representation +bool pmAstromWCStoFPA (pmFPA *fpa, pmChip *chip, const pmAstromWCS *wcs, double plateScale); +pmAstromWCS *pmAstromWCSfromFPA (const pmFPA *fpa, const pmChip *chip, double tol); + +// read wcs terms from the supplied header into the fpa hierarchy components +bool pmAstromReadWCS (pmFPA *fpa, pmChip *chip, const psMetadata *header, double plateScale); + +// write the wcs terms from the fpa hierarchy components into the supplied header +// tol is the convergence tolerance for the non-linear solution to the reference pixel +bool pmAstromWriteWCS (psMetadata *header, const pmFPA *fpa, const pmChip *chip, double tol); + +bool pmAstromReadBilevelChip (pmChip *chip, const psMetadata *header); +bool pmAstromReadBilevelMosaic (pmFPA *fpa, const psMetadata *header); + +bool pmAstromWriteBilevelChip (psMetadata *header, const pmChip *chip, double tol); +bool pmAstromWriteBilevelMosaic (psMetadata *header, const pmFPA *fpa, double tol); + +// move to pslib +psPlaneDistort *psPlaneDistortIdentity (int order); +bool psPlaneDistortIsDiagonal (psPlaneDistort *distort); + +# define PM_DEG_RAD 57.295779513082322 +# define PM_RAD_DEG 0.017453292519943 + +/// @} +#endif // PM_ASTROMETRY_WCS_H + +/* + * the wcs->trans component defines a polynomial which converts (x-crpix1),(y-crpix2) to + * L,M in degrees + */ Index: /branches/rel-1-1/psModules/src/camera/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/camera/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo Index: /branches/rel-1-1/psModules/src/camera/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/camera/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/Makefile.am (revision 12167) @@ -0,0 +1,53 @@ +noinst_LTLIBRARIES = libpsmodulescamera.la + +libpsmodulescamera_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) +libpsmodulescamera_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulescamera_la_SOURCES = \ + pmFPA.c \ + pmFPAConstruct.c \ + pmFPACopy.c \ + pmFPAHeader.c \ + pmFPAMaskWeight.c \ + pmFPAMosaic.c \ + pmFPARead.c \ + pmFPAUtils.c \ + pmFPAWrite.c \ + pmHDU.c \ + pmHDUUtils.c \ + pmHDUGenerate.c \ + pmFPA_JPEG.c \ + pmFPA_MANAPLOT.c \ + pmFPAview.c \ + pmFPAfile.c \ + pmFPAfileDefine.c \ + pmFPAfileIO.c \ + pmFPAfileFitsIO.c \ + pmFPAFlags.c \ + pmFPALevel.c \ + pmFPAExtent.c + +pkginclude_HEADERS = \ + pmFPA.h \ + pmFPAConstruct.h \ + pmFPACopy.h \ + pmFPAHeader.h \ + pmFPAMaskWeight.h \ + pmFPAMosaic.h \ + pmFPARead.h \ + pmFPAUtils.h \ + pmFPAWrite.h \ + pmHDU.h \ + pmHDUUtils.h \ + pmHDUGenerate.h \ + pmFPA_JPEG.h \ + pmFPA_MANAPLOT.h \ + pmFPAview.h \ + pmFPAfile.h \ + pmFPAfileDefine.h \ + pmFPAfileIO.h \ + pmFPAfileFitsIO.h \ + pmFPAFlags.h \ + pmFPALevel.h \ + pmFPAExtent.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/camera/pmFPA.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA.c (revision 12167) @@ -0,0 +1,407 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmConcepts.h" +#include "pmMaskBadPixels.h" + +static void readoutFree(pmReadout *readout) +{ + // if this readout has a parent, drop that instance + if (readout->parent) { + psTrace("psModules.camera", 9, "Removing readout %zd from cell %zd...\n", + (size_t)readout, (size_t)readout->parent); + psArray *readouts = readout->parent->readouts; + for (int i = 0; i < readouts->n; i++) { + if (readouts->data[i] == readout) { + readouts->data[i] = NULL; + } + } + } + psTrace("psModules.camera", 9, "Freeing readout %zd\n", (size_t) readout); + psFree(readout->image); + psFree(readout->mask); + psFree(readout->weight); + psFree(readout->analysis); + psFree(readout->bias); +} + +static void cellFree(pmCell *cell) +{ + + // if this cell has a parent, drop that instance + if (cell->parent) { + psTrace("psModules.camera", 9, "Removing cell %zd from chip %zd...\n", + (size_t)cell, (size_t)cell->parent); + psArray *cells = cell->parent->cells; + for (int i = 0; i < cells->n; i++) { + if (cells->data[i] == cell) { + cells->data[i] = NULL; + } + } + } + psTrace("psModules.camera", 9, "Freeing cell %zd\n", (size_t)cell); + pmCellFreeReadouts(cell); + psFree(cell->readouts); + + psFree(cell->concepts); + psFree(cell->analysis); + psFree(cell->config); + psFree(cell->hdu); +} + +static void chipFree(pmChip* chip) +{ + // if this chip has a parent, drop that instance + if (chip->parent) { + psTrace("psModules.camera", 9, "Removing chip %zd from fpa %zd...\n", + (size_t)chip, (size_t)chip->parent); + psArray *chips = chip->parent->chips; + for (int i = 0; i < chips->n; i++) { + if (chips->data[i] == chip) { + chips->data[i] = NULL; + } + } + } + + psTrace("psModules.camera", 9, "Freeing chip %zd\n", (size_t)chip); + pmChipFreeCells(chip); + psFree(chip->cells); + + psFree(chip->concepts); + psFree(chip->analysis); + psFree(chip->hdu); + + # if FPA_ASTROM + + psFree(chip->toFPA); + psFree(chip->fromFPA); + # endif +} + + +static void FPAFree(pmFPA *fpa) +{ + psTrace("psModules.camera", 9, "Freeing fpa %zd\n", (size_t)fpa); + + // NULL the parent pointers + psArray *chips = fpa->chips; + for (int i = 0 ; i < chips->n ; i++) { + pmChip *tmpChip = chips->data[i]; + if (! tmpChip) { + continue; + } + tmpChip->parent = NULL; + } + psFree(fpa->chips); + psFree(fpa->concepts); + psFree(fpa->analysis); + psFree((void *)fpa->camera); + psFree(fpa->hdu); + + # if FPA_ASTROM + + psFree(fpa->fromTPA); + psFree(fpa->toTPA); + psFree(fpa->toSky); + # endif +} + +void pmCellFreeReadouts(pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell,); + + // + // Set the parent to NULL in all cell->readouts before psFree(cell->readouts) + // in order to avoid memory reference counter problems. + // + psArray *readouts = cell->readouts; + for (psS32 i = 0 ; i < readouts->n ; i++) { + pmReadout *tmpReadout = readouts->data[i]; + if (! tmpReadout) { + continue; + } + tmpReadout->parent = NULL; + psTrace("psModules.camera", 9, "Will now free readout %zd...\n", (size_t)tmpReadout); + } + cell->readouts = psArrayRealloc(cell->readouts, 0); + cell->readouts->n = 0; +} + + +void pmChipFreeCells(pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip,); + + // + // Set the parent to NULL in all chip->cells before psFree(chip->cells) + // in order to avoid memory reference counter problems. + // + psArray *cells = chip->cells; + for (int i = 0 ; i < cells->n ; i++) { + pmCell *tmpCell = cells->data[i]; + if (! tmpCell) { + continue; + } + tmpCell->parent = NULL; + pmCellFreeReadouts(tmpCell);// Drop all readouts the cell holds + } + chip->cells = psArrayRealloc(chip->cells, 0); + chip->cells->n = 0; +} + +void pmReadoutFreeData (pmReadout *readout) +{ + psFree(readout->image); + psFree(readout->mask); + psFree(readout->weight); + psFree(readout->bias); + + psTrace("psModules.camera", 3, "Freeing readout data for %zd\n", (size_t) readout); + + readout->image = NULL; + readout->weight = NULL; + readout->mask = NULL; + readout->bias = psListAlloc(NULL); +} + +void pmCellFreeData(pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell,); + + for (int i = 0; i < cell->readouts->n; i++) { + pmReadoutFreeData(cell->readouts->data[i]); + } + if (cell->hdu) { + psFree(cell->hdu->images); + psFree(cell->hdu->weights); + psFree(cell->hdu->masks); + // psFree(cell->hdu->header); + + cell->hdu->images = NULL; + cell->hdu->weights = NULL; + cell->hdu->masks = NULL; + // cell->hdu->header = NULL; + } +} + +void pmChipFreeData(pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip,); + + for (int i = 0; i < chip->cells->n; i++) { + pmCellFreeData(chip->cells->data[i]); + } + if (chip->hdu) { + psFree(chip->hdu->images); + psFree(chip->hdu->weights); + psFree(chip->hdu->masks); + // psFree(chip->hdu->header); + + chip->hdu->images = NULL; + chip->hdu->weights = NULL; + chip->hdu->masks = NULL; + // chip->hdu->header = NULL; + } +} + +void pmFPAFreeData(pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa,); + + for (int i = 0; i < fpa->chips->n; i++) { + pmChipFreeData(fpa->chips->data[i]); + } + if (fpa->hdu) { + psFree(fpa->hdu->images); + psFree(fpa->hdu->weights); + psFree(fpa->hdu->masks); + // psFree(fpa->hdu->header); + + fpa->hdu->images = NULL; + fpa->hdu->weights = NULL; + fpa->hdu->masks = NULL; + // fpa->hdu->header = NULL; + } +} + +pmReadout *pmReadoutAlloc(pmCell *cell) +{ + pmReadout *tmpReadout = (pmReadout *)psAlloc(sizeof(pmReadout)); + psMemSetDeallocator(tmpReadout, (psFreeFunc) readoutFree); + + tmpReadout->image = NULL; + tmpReadout->mask = NULL; + tmpReadout->weight = NULL; + tmpReadout->bias = psListAlloc(NULL); + tmpReadout->analysis = psMetadataAlloc(); + tmpReadout->parent = cell; + if (cell) { + cell->readouts = psArrayAdd(cell->readouts, 1, (psPtr) tmpReadout); + } + + tmpReadout->process = true; // All cells are processed by default + tmpReadout->file_exists = false; // file not yet identified + tmpReadout->data_exists = false; // data yet read in + + tmpReadout->row0 = 0; + tmpReadout->col0 = 0; + + return(tmpReadout); +} + +pmCell *pmCellAlloc( + pmChip *chip, + const char *name +) +{ + pmCell *tmpCell = (pmCell *) psAlloc(sizeof(pmCell)); + psMemSetDeallocator(tmpCell, (psFreeFunc) cellFree); + + tmpCell->config = NULL; + tmpCell->analysis = psMetadataAlloc(); + tmpCell->readouts = psArrayAlloc(0); + tmpCell->parent = chip; + if (chip) { + chip->cells = psArrayAdd(chip->cells, 1, (psPtr) tmpCell); + } + tmpCell->hdu = NULL; + tmpCell->process = true; // All cells are processed by default + tmpCell->file_exists = false; // Not yet identified + tmpCell->data_exists = false; // Not yet read in + + tmpCell->concepts = psMetadataAlloc(); + tmpCell->conceptsRead = PM_CONCEPT_SOURCE_NONE; + if (!psMetadataAddStr(tmpCell->concepts, PS_LIST_HEAD, "CELL.NAME", 0, NULL, name)) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not add CELL.NAME to metadata.\n"); + } + pmConceptsBlankCell(tmpCell); + + return tmpCell; +} + +pmChip *pmChipAlloc( + pmFPA *fpa, + const char *name) +{ + pmChip *tmpChip = (pmChip*)psAlloc(sizeof(pmChip)); + psMemSetDeallocator(tmpChip, (psFreeFunc) chipFree); + + #if FPA_ASTROM + + tmpChip->toFPA = NULL; + tmpChip->fromFPA = NULL; + #endif + + tmpChip->analysis = psMetadataAlloc(); + tmpChip->cells = psArrayAlloc(0); + tmpChip->parent = fpa; + if (fpa) { + psArrayAdd(fpa->chips, 1, (psPtr)tmpChip); + } + tmpChip->hdu = NULL; + tmpChip->process = true; // Work on all chips, by default + tmpChip->file_exists = false; // Not yet identified + tmpChip->data_exists = false; // Not yet read in + + tmpChip->concepts = psMetadataAlloc(); + tmpChip->conceptsRead = PM_CONCEPT_SOURCE_NONE; + if (!psMetadataAddStr(tmpChip->concepts, PS_LIST_HEAD, "CHIP.NAME", 0, NULL, name)) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not add CHIP.NAME %s to concepts.\n", name); + } + pmConceptsBlankChip(tmpChip); + return tmpChip; +} + +pmFPA *pmFPAAlloc(const psMetadata *camera) +{ + pmFPA *tmpFPA = (pmFPA *) psAlloc(sizeof(pmFPA)); + psMemSetDeallocator(tmpFPA, (psFreeFunc) FPAFree); + + #if FPA_ASTROM + + tmpFPA->fromTPA = NULL; + tmpFPA->toTPA = NULL; + tmpFPA->toSky = NULL; + #endif + + tmpFPA->analysis = psMetadataAlloc(); + tmpFPA->camera = psMemIncrRefCounter((psPtr)camera); + tmpFPA->chips = psArrayAlloc(0); + tmpFPA->hdu = NULL; + + tmpFPA->concepts = psMetadataAlloc(); + tmpFPA->conceptsRead = PM_CONCEPT_SOURCE_NONE; + pmConceptsBlankFPA(tmpFPA); + + return tmpFPA; +} + +// Check a cell to ensure that all component readouts have the parent pointer set correctly +static bool cellCheckParents(pmCell *cell // Cell to check + ) +{ + PS_ASSERT_PTR_NON_NULL(cell, true); + + bool flag = true; + for (long i = 0; i < cell->readouts->n ; i++) { + pmReadout *tmpReadout = (pmReadout *) cell->readouts->data[i]; + if (!tmpReadout) { + continue; + } + if (tmpReadout->parent != cell) { + tmpReadout->parent = cell; + flag = false; + } + } + return flag; +} + +// Check a chip to ensure that all component cells have the parent pointer set correctly +static bool chipCheckParents(pmChip *chip // Chip to check + ) +{ + PS_ASSERT_PTR_NON_NULL(chip, true); + + bool flag = true; + for (long i = 0; i < chip->cells->n ; i++) { + pmCell *tmpCell = (pmCell*)chip->cells->data[i]; + if (!tmpCell) { + continue; + } + if (tmpCell->parent != chip) { + tmpCell->parent = chip; + flag = false; + } + + flag &= cellCheckParents(tmpCell); + } + return flag; +} + +psBool pmFPACheckParents(pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, true); + + bool flag = true; + for (long i = 0; i < fpa->chips->n ; i++) { + pmChip *tmpChip = (pmChip*)fpa->chips->data[i]; + if (!tmpChip) { + continue; + } + if (tmpChip->parent != fpa) { + tmpChip->parent = fpa; + flag = false; + } + + flag &= chipCheckParents(tmpChip); + } + return flag; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPA.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA.h (revision 12167) @@ -0,0 +1,186 @@ +/* @file pmFPA.h + * @brief Defines the focal plane hierarchy, along with functions for interacting with it + * + * @author George Gusciora, MHPCC + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_H +#define PM_FPA_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include +#include "pmHDU.h" + +#define FPA_ASTROM 1 ///< Include astrometry information in the structures? + +/// Focal plane array (the entirety of the camera) +/// +/// The FPA is the top-level camera structure, and consists of one or more chips. It also contains the +/// concepts metadata appropriate to this level, a summary of analysis tasks that have been performed, the +/// camera configuration information, any HDU that corresponds to this level for the file of interest, and +/// astrometric transformations. The astrometric transformations encode how to transform from the tangent +/// plane to the sky, and back. +typedef struct +{ + #if FPA_ASTROM + // Astrometric transformations + psPlaneTransform *fromTPA; ///< Transformation from tangent plane to focal plane, or NULL + psPlaneTransform *toTPA; ///< Transformation from focal plane to tangent plane, or NULL + psProjection *toSky; ///< Projection from tangent plane to sky, or NULL + #endif + // Information + psMetadata *concepts; ///< FPA-level concepts + unsigned int conceptsRead; ///< Which concepts have been read; see pmConceptsSource + psMetadata *analysis; ///< FPA-level analysis metadata + const psMetadata *camera; ///< Camera configuration + psArray *chips; ///< The component chips + pmHDU *hdu; ///< FITS header data unit of interest, or NULL +} +pmFPA; + +/// A chip (contiguous detector element) +/// +/// The chip is the mid-level camera structure, being part of an FPA, and consisting of one or more cells +/// (e.g., a CCD). It also contains the concepts metadata appropriate to this level, a summary of analysis +/// tasks that have been performed, status flags, any HDU that corresponds to this level for the file of +/// interest, and astrometric transformations. The astrometric transformations provide transforms between the +/// chip and FPA coordinates and back. +typedef struct +{ + #if FPA_ASTROM + // Astrometric transformations + psPlaneTransform *toFPA; ///< Transformation from chip to FPA coordinates, or NULL + psPlaneTransform *fromFPA; ///< Transformation from FPA to chip coordinates, or NULL + #endif + // Information + psMetadata *concepts; ///< Chip-level concepts + unsigned int conceptsRead; ///< Which concepts have been read; see pmConceptsSource + psMetadata *analysis; ///< Chip-level analysis metadata + psArray *cells; ///< The component cells + pmFPA *parent; ///< Parent FPA + bool process; ///< Do we bother about reading and working with this chip? + bool file_exists; ///< Does the file for this chip exist (read case only)? + bool data_exists; ///< Does the data for this chip exist (read case only)? + pmHDU *hdu; ///< FITS header data unit of interest, +} +pmChip; + +/// A cell (smallest logical unit) +/// +/// A cell is the lowest-level camera structure, being part of a chip (e.g., an amplifier). It may consist of +/// one or more readouts, which are individual reads of the cell. It also contains the concepts metadata +/// appropriate to this level, the cell configuration information (for convenience) from the camera +/// configuration, a summary of analysis tasks that have been performed, status flags, and any HDU that +/// corresponds to this level for the file of interest + +/** Cell data structure + * + * A cell consists of one or more readouts. It also contains a pointer to the + * cell's metadata, and its parent chip. On the astrometry side, it also + * contains coordinate transforms from the cell to chip, from the cell to + * focal-plane, as well as a "quick and dirty" tranform from the cell to + * sky coordinates. + * + */ +typedef struct +{ + psMetadata *concepts; ///< Cell-level concepts + unsigned int conceptsRead; ///< Which concepts have been read; see pmConceptsSource + psMetadata *config; ///< Cell configuration information (from CELLS in the camera config) + psMetadata *analysis; ///< Cell-level analysis metadata + psArray *readouts; ///< The component readouts + pmChip *parent; ///< Parent chip + bool process; ///< Do we bother about reading and working with this cell? + bool file_exists; ///< Does the file for this cell exist (read case only)? + bool data_exists; ///< Does the data for this cell exist (read case only)? + pmHDU *hdu; ///< FITS header data unit of interest +} +pmCell; + +/// A readout (individual read of a cell) +/// +/// A readout corresponds to an individual read of a cell (e.g., a single image as part of a video sequence, +/// or one of multiple coadds). It contains the actual pixels used in analysis (along with mask and weight +/// maps). When reading from a FITS file, the images are subimages (from CELL.TRIMSEC) of the pixels read +/// from the appropriate HDU (at the FPA, chip or cell level). The readout also contains a list of bias +/// sections (prescans or overscans, or otherwise), a summary of analysis tasks that have been performed, +/// status flags, and the offsets used for reading a FITS file incrementally. +typedef struct +{ + int col0; ///< Column offset; non-zero if reading in columns incrementally + int row0; ///< Row offset; non-zero if reading in rows incrementally + psImage *image; ///< Imaging area of readout (corresponds to CELL.TRIMSEC region) + psImage *mask; ///< Mask of input image (corresponds to CELL.TRIMSEC region) + psImage *weight; ///< Weight of input image (corresponds to CELL.TRIMSEC region) + psList *bias; ///< List of bias (prescan/overscan) images + psMetadata *analysis; ///< Readout-level analysis metadata + pmCell *parent; ///< Parent cell + bool process; ///< Do we bother about reading and working with this readout? + bool file_exists; ///< Does the file for this readout exist (read case only)? + bool data_exists; ///< Does the data for this readout exist (read case only)? +} +pmReadout; + +/// Free all readouts within a cell +void pmCellFreeReadouts(pmCell *cell ///< Cell for which to free readouts + ); + +/// Free all cells within a chip +void pmChipFreeCells(pmChip *chip ///< Chip for which to free cells + ); + +/// Free all data within a readout +void pmReadoutFreeData(pmReadout *readout ///< Readout for which to free data + ); + +/// Free all data within a cell (all readouts as well as metadata) +void pmCellFreeData(pmCell *cell ///< Cell for which to free data + ); + +/// Free all data within a chip (all cells as well as metadata) +void pmChipFreeData(pmChip *chip ///< Chip for which to free data + ); + +/// Free all data within an FPA (all chips as well as metadata) +void pmFPAFreeData(pmFPA *fpa ///< FPA for which to free data + ); + +/// Allocate a readout associated with a cell +pmReadout *pmReadoutAlloc(pmCell *cell ///< Parent cell, or NULL + ); + +/// Allocate a cell associated with a chip +/// +/// The name is used to set CELL.NAME within the concepts. +pmCell *pmCellAlloc(pmChip *chip, ///< Parent chip, or NULL + const char *name ///< Name of cell, for CELL.NAME + ); + +/// Allocate a chip associated with an FPA +/// +/// The name is used to set CHIP.NAME within the concepts +pmChip *pmChipAlloc(pmFPA *fpa, ///< Parent FPA, or NULL + const char *name ///< Name of chip, for CHIP.NAME + ); + +/// Allocate an FPA +pmFPA *pmFPAAlloc(const psMetadata *camera ///< Camera configuration (to store in FPA) + ); + + +/// Check parent links within an FPA +/// +/// Iterates through the FPA to verify that the "parent" links in the chip, cell and readout are set +/// correctly. If there are any incorrect links, they are fixed, and the function returns false. +bool pmFPACheckParents(pmFPA *fpa ///< FPA to check + ); +/// @} +#endif // #ifndef PM_FPA_H Index: /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.c (revision 12167) @@ -0,0 +1,947 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmFPALevel.h" +#include "pmFPAFlags.h" +#include "pmConcepts.h" +#include "pmFPAConstruct.h" +#include "pmFPAview.h" +#include "pmFPAUtils.h" +#include "pmHDUUtils.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Read data for a particular cell from the camera format description +static psMetadata *getCellData(const psMetadata *format, // The camera format description + const char *cellName // The name of the cell + ) +{ + assert(format); + assert(cellName && strlen(cellName) > 0); + + bool status = true; // Result of MD lookup + psMetadata *cells = psMetadataLookupMetadata(&status, format, "CELLS"); // The CELLS + if (!status || !cells) { + psError(PS_ERR_IO, true, "Unable to determine CELLS of camera.\n"); + return NULL; + } + + psMetadata *cellData = psMetadataLookupMetadata(&status, cells, cellName); // The data for the particular cell + if (!status || !cellData) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find specs for cell %s: ignored\n", cellName); + } + + return cellData; +} + +// Parse a list of first:second:third pairs in a string +static bool parseContent(psArray **first, // Array of the first values + psArray **second, // Array of the second values + psArray **third, // Array of the third values + const char *string // The string to parse + ) +{ + assert(first); + assert(second); + assert(third); + assert(string && strlen(string) > 0); + + bool allOK = true; // Everything was OK? + psList *values = psStringSplit(string, " ,;", true); // List of the parts + *first = psArrayAlloc(values->n); + *second = psArrayAlloc(values->n); + *third = psArrayAlloc(values->n); + int num = 0; + psListIterator *valuesIter = psListIteratorAlloc(values, PS_LIST_HEAD, false); // Iterator for values + psString value = NULL; // "first:second:third" string + while ((value = psListGetAndIncrement(valuesIter))) { + psList *firstSecondThird = psStringSplit(value, ":", true); // List containing the first, second, third + psArray *fst = psListToArray(firstSecondThird); // An array representation + psFree(firstSecondThird); + psString firstPart = NULL; // The first part + psString secondPart = NULL; // The second part + psString thirdPart = NULL; // The third part + switch (firstSecondThird->n) { + case 1: + thirdPart = fst->data[0]; + break; + case 2: + secondPart = fst->data[0]; + thirdPart = fst->data[1]; + break; + case 3: + firstPart = fst->data[0]; + secondPart = fst->data[1]; + thirdPart = fst->data[2]; + break; + default: + psLogMsg(__func__, PS_LOG_WARN, "Badly formated specifier: %s --- ignored.\n", value); + allOK = false; + psFree(fst); + continue; + } + psArraySet(*first, num, firstPart); + psArraySet(*second, num, secondPart); + psArraySet(*third, num, thirdPart); + num++; + psFree(fst); + } + psFree(valuesIter); + psFree(values); + + return allOK; +} + +// Get the name of a PHU chip or cell from the header +static psString phuNameFromHeader(const char *name, // The name to lookup: "CELL.NAME" or "CHIP.NAME" + const psMetadata *fileInfo, // FILE within the camera format description + const psMetadata *header // Primary header + ) +{ + assert(name && strlen(name) > 0); + assert(fileInfo); + assert(header); + + bool mdok = true; // Result of MD lookup + psString keyword = psMetadataLookupStr(&mdok, fileInfo, name); + if (!mdok || strlen(keyword) == 0) { + return false; + } + psMetadataItem *resultItem = psMetadataLookup(header, keyword); + if (!resultItem) { + psError(PS_ERR_IO, true, "Unable to find %s in primary header to identify %s.\n", keyword, name); + return NULL; + } + return psMetadataItemParseString(resultItem); +} + +// Add an HDU to the FPA +static bool addHDUtoFPA(pmFPA *fpa, // FPA to which to add + pmHDU *hdu // HDU to be added + ) +{ + assert(fpa); + assert(hdu); + + if (fpa->hdu) { + // Something's already here + if (fpa->hdu != hdu) { + psError(PS_ERR_IO, true, "Unable to add HDU since FPA already has one.\n"); + } + return false; + } + fpa->hdu = psMemIncrRefCounter(hdu); + bool success = true; // Success of reading concepts + if (hdu->header && !pmConceptsReadFPA(fpa, PM_CONCEPT_SOURCE_DEFAULTS | PM_CONCEPT_SOURCE_HEADER, + false, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts from header.\n"); + success = false; + } + pmFPASetFileStatus(fpa, true); + + return success; +} + +// Add an HDU to the chip +static bool addHDUtoChip(pmChip *chip, // Chip to which to add + pmHDU *hdu // HDU to be added + ) +{ + assert(chip); + assert(hdu); + + if (chip->hdu) { + // Something's already here + if (chip->hdu != hdu) { + psError(PS_ERR_IO, true, "Unable to add HDU since chip already has one.\n"); + } + return false; + } + chip->hdu = psMemIncrRefCounter(hdu); + bool success = true; // Success of reading concepts + if (hdu->header && !pmConceptsReadChip(chip, PM_CONCEPT_SOURCE_DEFAULTS | PM_CONCEPT_SOURCE_HEADER, + true, false, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts from header.\n"); + success = false; + } + pmChipSetFileStatus(chip, true); + + return success; +} + +// Add an HDU to the cell +static bool addHDUtoCell(pmCell *cell, // Cell to which to add + pmHDU *hdu // HDU to be added + ) +{ + assert(cell); + assert(hdu); + + if (cell->hdu) { + // Something's already here + if (cell->hdu != hdu) { + psError(PS_ERR_IO, true, "Unable to add HDU since cell already has one.\n"); + } + return false; + } + cell->hdu = psMemIncrRefCounter(hdu); + bool success = true; // Success of reading concepts + if (hdu->header && !pmConceptsReadCell(cell, PM_CONCEPT_SOURCE_DEFAULTS | PM_CONCEPT_SOURCE_HEADER, + true, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts from header.\n"); + success = false; + } + pmCellSetFileStatus(cell, true); + + return success; +} + + +// Looks up the particular content, based on the chip and cell +static const char *getContent(const psMetadata *fileInfo, // The FILE from the camera format configuration + const psMetadata *contents, // The CONTENTS from the camera format configuration + const pmChip *chip, // The chip of interest + const pmCell *cell // The cell of interest + ) +{ + assert(fileInfo); + assert(contents); + assert(chip); + + bool mdok = true; // Status of MD lookup + char *contentKey = psMetadataLookupStr(&mdok, fileInfo, "CONTENT"); // Key for CONTENTS + if (!mdok || !contentKey || strlen(contentKey) == 0) { + psError(PS_ERR_IO, true, "Unable to find CONTENT in FILE within camera format configuration.\n"); + return NULL; + } + + contentKey = psStringCopy(contentKey); // So that we're not altering something someone else might use... + + // Replace some concept names + if (strstr(contentKey, "{CHIP.NAME}")) { + if (!chip) { + psError(PS_ERR_IO, true, "CONTENT in FILE refers to CHIP.NAME, but no chip was provided.\n"); + psFree(contentKey); + return NULL; + } + const char *name = psMetadataLookupStr(&mdok, chip->concepts, "CHIP.NAME"); + if (mdok && name && strlen(name) > 0) { + psStringSubstitute(&contentKey, name, "{CHIP.NAME}"); + } + } + + if (strstr(contentKey, "{CELL.NAME}")) { + if (!chip) { + psError(PS_ERR_IO, true, "CONTENT in FILE refers to CELL.NAME, but no chip was provided.\n"); + psFree(contentKey); + return NULL; + } + const char *name = psMetadataLookupStr(&mdok, cell->concepts, "CELL.NAME"); + if (mdok && name && strlen(name) > 0) { + psStringSubstitute(&contentKey, name, "{CELL.NAME}"); + } + } + + // XXX: MORE SUBSTITUTION OPTIONS HERE! + + psTrace("psModules.camera", 5, "Looking up %s in the CONTENTS.\n", contentKey); + const char *content = psMetadataLookupStr(&mdok, contents, contentKey); + if (!mdok || !content || strlen(content) == 0) { + psFree(contentKey); + psError(PS_ERR_IO, true, "Unable to find %s in the CONTENTS.\n", contentKey); + return NULL; + } + + psFree(contentKey); + + return content; +} + + +// Given a (string) list of contents "chip:cell:type chip:cell:type", put the HDU in the correct place and +// plug in the cell configuration information +static int processContents(pmFPA *fpa, // The FPA + pmChip *chip, // The chip, or NULL + pmCell *cell, // The cell, or NULL + pmHDU *hdu, // The HDU to be added + pmFPALevel level, // The level at which to add the HDU + const char *contents, // The contents line, consisting of a list of chip:cell + const psMetadata *format // Camera format configuration + ) +{ + assert(fpa); + assert(contents && strlen(contents) > 0); + assert(!cell || (cell && chip)); // Need both chip and cell if given a cell + assert(format); + + if (hdu && level == PM_FPA_LEVEL_FPA) { + if (!addHDUtoFPA(fpa, hdu)) { + psError(PS_ERR_UNKNOWN, false, "Adding HDU to FPA (%s)", contents); + return -1; + } + } + + // Parse the list of chip:cell:type + psArray *chips = NULL; // The chips (first bits) + psArray *cells = NULL; // The cells (second bits) + psArray *types = NULL; // The cell types (third bits) + int numCells = 0; // Number of cells processed + parseContent(&chips, &cells, &types, contents); + for (int i = 0; i < types->n; i++) { + psString chipName = chips->data[i]; // The name of the chip + psString cellName = cells->data[i]; // The name of the cell + psString cellType = types->data[i]; // The type of the cell + + // Get the chip + pmChip *newChip = NULL; // The chip specified + if (chip) { + newChip = chip; + } else if (chipName) { + // Find the chip + int chipNum = pmFPAFindChip(fpa, chipName); // The chip we're looking for + if (chipNum == -1) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find chip %s in fpa --- ignored.\n", chipName); + continue; + } + newChip = fpa->chips->data[chipNum]; + } + + if (!newChip) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to determine chip for entry %d of content (follows) --- " + "ignored.\n\t%s", i, contents); + continue; + } + + // Put in the HDU + if (hdu && level == PM_FPA_LEVEL_CHIP) { + addHDUtoChip(newChip, hdu); + } + // load chip-related concepts + if (!pmConceptsReadChip(newChip, PM_CONCEPT_SOURCE_DEFAULTS, false, false, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts from camera and defaults for chip %s\n", + chipName); + return -1; + } + + // Get the cell + pmCell *newCell = NULL; // The cell specified + if (cell) { + newCell = cell; + } else if (cellName) { + // Find the cell + int cellNum = pmChipFindCell(newChip, cellName); // The cell we're looking for + if (cellNum == -1) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find cell %s in chip %s --- ignored.\n", + cellName, chipName); + continue; + } + newCell = newChip->cells->data[cellNum]; + } + if (!newCell) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to determine cell for entry %d of content (follows) --- " + "ignored.\n\t%s", i, contents); + continue; + } + + // Get the type + if (!cellType) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to determine cell type for entry %d of content (follows) " + "--- ignored.\n\t%s", i, contents); + continue; + } + psMetadata *cellData = getCellData(format, cellType); // Data for this cell + + if (hdu && level == PM_FPA_LEVEL_CELL) { + addHDUtoCell(newCell, hdu); + } + + // Put in the cell data + if (newCell->config) { + psLogMsg(__func__, PS_LOG_WARN, "Overwriting cell data in chip %s, cell %s\n", chipName, + cellName); + psFree(newCell->config); // Make way! + } + newCell->config = psMemIncrRefCounter(cellData); + if (!pmConceptsReadCell(newCell, PM_CONCEPT_SOURCE_CELLS | PM_CONCEPT_SOURCE_DEFAULTS, + false, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts from camera and defaults for chip %s, " + "cell %s, type %s", chipName, cellName, cellType); + return -1; + } + numCells++; + } + psFree(chips); + psFree(cells); + psFree(types); + + return numCells; +} + +// Return the level at which EXTENSIONS go, from the FILE metadata within the camera format +static pmFPALevel hduLevel(const psMetadata *format // The camera format configuration + ) +{ + assert(format); + + bool mdok = true; // Status of MD lookup + psMetadata *file = psMetadataLookupMetadata(&mdok, format, "FILE"); // File information + if (!mdok || !file) { + psError(PS_ERR_IO, true, "Unable to find FILE information in camera format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + const char *extType = psMetadataLookupStr(&mdok, file, "EXTENSIONS"); + if (!mdok || !extType || strlen(extType) == 0) { + psError(PS_ERR_IO, true, "Unable to find EXTENSIONS in the FILE information in the camera format" + " configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + + // Where do we stick in the HDUs? + pmFPALevel level = PM_FPA_LEVEL_NONE; // Level for HDU insertion + if (strcasecmp(extType, "CHIP") == 0) { + level = PM_FPA_LEVEL_CHIP; + } else if (strcasecmp(extType, "CELL") == 0) { + level = PM_FPA_LEVEL_CELL; + } else if (strcasecmp(extType, "NONE") != 0) { + psError(PS_ERR_IO, true, "EXTENSIONS is not CHIP or CELL or NONE.\n"); + } + + return level; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +pmFPA *pmFPAConstruct(const psMetadata *camera) +{ + PS_ASSERT_PTR_NON_NULL(camera, NULL); + + pmFPA *fpa = pmFPAAlloc(camera); // The FPA to fill out + + bool mdok = true; // Status from MD lookups + psMetadata *components = psMetadataLookupMetadata(&mdok, camera, "FPA"); // FPA components + if (!mdok || !components) { + psError(PS_ERR_IO, true, "Failed to lookup \"FPA\""); + psFree(fpa); + return NULL; + } + psMetadataIterator *componentsIter = psMetadataIteratorAlloc(components, PS_LIST_HEAD, NULL); + psMetadataItem *componentsItem = NULL; // Item from components + while ((componentsItem = psMetadataGetAndIncrement(componentsIter))) { + const char *chipName = componentsItem->name; // Name of the chip + if (componentsItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "Element %s in FPA within the camera configuration is not of " + "type STR (type=%x) --- ignored.\n", chipName, componentsItem->type); + continue; + } + + pmChip *chip = pmChipAlloc(fpa, chipName); // The chip + psList *cellNames = psStringSplit(componentsItem->data.V, " ,;", true); // List of cell names + psListIterator *cellNamesIter = psListIteratorAlloc(cellNames, PS_LIST_HEAD, false); // Iterator + + psString cellName = NULL; // Name of cell + while ((cellName = psListGetAndIncrement(cellNamesIter))) { + pmCell *cell = pmCellAlloc(chip, cellName); // New cell + psFree(cell); // Drop reference + } + psFree(chip); // Drop reference + psFree(cellNamesIter); + psFree(cellNames); + } + psFree(componentsIter); + + return fpa; +} + + +// This is the engine for the pmFPAAddSourceFrom{Header,View} functions. +// It uses the camera format configuration information to determine where HDUs go in the FPA. +// It returns a view corresponding to the PHU +static pmFPAview *addSource(pmFPA *fpa, // The FPA + const char *fpaname, // The desired FPA name + const pmFPAview *phuView, // The view corresponding to the PHU, or NULL + const psMetadata *header, // The PHU header, or NULL + const psMetadata *format, // Format of file + bool install // Install the provided header in the location that we find? + ) +{ + assert(fpa); + assert(phuView || header); + assert(format); + + bool mdok; // Status of MD lookup + + // If FPA.NAME is already defined, new name must match it; otherwise, warn the user that something + // potentially bad is happening. + if (fpaname && install) { + const char *currentName = psMetadataLookupStr(&mdok, fpa->concepts, "FPA.NAME"); // Current name + if (mdok && currentName && strlen(currentName) > 0 && strcmp(currentName, fpaname) != 0) { + psLogMsg(__func__, PS_LOG_WARN, "FPA.NAME for new source (%s) doesn't match FPA.NAME for current " + "fpa (%s).\n", fpaname, currentName); + } + psMetadataAddStr(fpa->concepts, PS_LIST_HEAD, "FPA.NAME", PS_META_REPLACE, "Name of FPA", fpaname); + } else if (!psMetadataLookup(fpa->concepts, "FPA.NAME")) { + // Make sure there is an FPA.NAME + psMetadataAddStr(fpa->concepts, PS_LIST_HEAD, "FPA.NAME", 0, "Name of FPA", "UNKNOWN"); + } + + psMetadata *fileInfo = psMetadataLookupMetadata(&mdok, format, "FILE"); // The file information + if (!mdok || !fileInfo) { + psError(PS_ERR_IO, false, "Unable to find FILE in the camera format configuration.\n"); + return NULL; + } + + // At what level does the PHU go? + const char *phuType = psMetadataLookupStr(&mdok, fileInfo, "PHU"); // What is the PHU? + if (!mdok || strlen(phuType) == 0) { + psError(PS_ERR_IO, false, "Unable to find PHU in the format specification.\n"); + return NULL; + } + + // Prepare the PHU to be placed in the camera hierarchy + pmHDU *phdu = pmHDUAlloc(NULL); // The primary header data unit + // Casting to psPtr to avoide "warning: passing arg 1 of `p_psMemIncrRefCounter' discards qualifiers from + // pointer target type" + phdu->header = psMemIncrRefCounter((const psPtr)header); + phdu->format = psMemIncrRefCounter((const psPtr)format); + pmFPAview *view = pmFPAviewAlloc(0); // View, to be returned + if (phuView) { + // Copy the view, for the case where we're given a header. + *view = *phuView; + } + + // And at what level do the individual extensions go? + const char *extType = psMetadataLookupStr(&mdok, fileInfo, "EXTENSIONS"); // What's in the extns? + if (!mdok || strlen(extType) == 0) { + psError(PS_ERR_IO, false, "Unable to find EXTENSIONS in the format specification.\n"); + psFree(view); + return NULL; + } + + // Now, there are a few cases: + + // 1. PHU=FPA and EXTENSIONS=NONE. This is a single CCD imager, where the entire FPA is in the PHU image. + // In this case, the CONTENTS is of type STR (rather than METADATA), and has the usual chip:cell:cellType. + // + // 2. PHU=CHIP or PHU=CELL, and EXTENSIONS=NONE. This is a single chip or cell from a mosaic camera in + // its own file (e.g., Megacam split). In this case, the CONTENTS is of type METADATA, and consists of a + // menu of choices for the contents of the file. This is because we need to work out which chip and/or + // cell it comes from. + // + // 3. EXTENSIONS=CHIP or EXTENSIONS=CELL. This is a mosaic camera, with multiple extensions. In this + // case, the CONTENTS is of type METADATA, and consists of a list of contents of the file. + // + // In all of the above cases, the contents are specified by chip:cell:cellType triples. It's just how the + // contents as a *whole* are collected that changes, and what that collection means. + // + // We deal with each of these cases in turn. + + // Case 1: PHU=FPA and EXTENSIONS=NONE. We need to parse the single list of chip:cell:cellType entries. + if (strcasecmp(phuType, "FPA") == 0 && strcasecmp(extType, "NONE") == 0) { + phdu->blankPHU = false; + const char *contents = psMetadataLookupStr(&mdok, format, "CONTENTS"); // The contents of the file + if (!mdok || !contents || strlen(contents) == 0) { + psError(PS_ERR_IO, true, "Unable to find CONTENTS in the camera format configuration.\n"); + psFree(phdu); + psFree(view); + return NULL; + } + if (install && processContents(fpa, NULL, NULL, phdu, PM_FPA_LEVEL_FPA, contents, format) < 0) { + psError(PS_ERR_IO, false, "Error setting CONTENTS"); + psFree(phdu); + psFree(view); + return NULL; + } + psFree(phdu); + + if (install && header && !pmConceptsRead(fpa, NULL, NULL, PM_CONCEPT_SOURCE_PHU, NULL)) { + psWarning("Unable to read concepts from PHU.\n"); + } + + return view; + } + + // In cases 2 and 3, the CONTENTS is of type METADATA, and is either a menu (if EXTENSIONS=NONE), or a + // list of extensions otherwise. + psMetadata *contents = psMetadataLookupMetadata(&mdok, format, "CONTENTS"); // The contents of the file + if (!mdok || !contents) { + if (mdok && !contents) { + psError(PS_ERR_IO, true, "CONTENTS metadata is NULL in the camera format configuration."); + } else { + if(psMetadataLookup(format, "CONTENTS") != NULL) { + psError(PS_ERR_IO, true, "CONTENTS is of wrong type in camera format configuration"); + } else { + psError(PS_ERR_IO, true, "Unable to find CONTENTS in the camera format configuration."); + } + } + psFree(phdu); + psFree(view); + return NULL; + } + + // Case 2: EXTENSIONS=NONE. We only have the PHU. The value of CONTENT tells us a header keyword, which + // gives us the key to the CONTENTS menu. Or, if we've got the view specifying the PHU, we can get the + // chip/cell directly from that. + if (strcasecmp(extType, "NONE") == 0) { + phdu->blankPHU = false; + pmChip *chip = NULL; // The chip of interest + pmCell *cell = NULL; // The cell of interest + pmFPALevel level = PM_FPA_LEVEL_NONE; // Level for HDU to be added + + if (phuView) { + // We can get the chip/cell from the view + if (phuView->chip != -1 && phuView->chip < fpa->chips->n) { + chip = fpa->chips->data[phuView->chip]; + level = PM_FPA_LEVEL_CHIP; + if (phuView->cell != -1) { + if (phuView->cell < chip->cells->n) { + cell = chip->cells->data[phuView->cell]; + level = PM_FPA_LEVEL_CELL; + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "PHU view for cell (%d) does not " + "correspond to camera format.\n", phuView->cell); + psFree(phdu); + return NULL; + } + } + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "PHU view for chip (%d) does not correspond to " + "camera format.\n", phuView->chip); + psFree(phdu); + return NULL; + } + } else { + // Need to look up what chip we have. + psString chipName = phuNameFromHeader("CHIP.NAME", fileInfo, header); + psTrace("psModules.camera", 5, "This is chip %s\n", chipName); + int chipNum = pmFPAFindChip(fpa, chipName); // Chip number + if (chipNum == -1) { + psError(PS_ERR_IO, true, "Unable to find chip %s in FPA.\n", chipName); + psFree(phdu); + psFree(view); + return NULL; + } + chip = fpa->chips->data[chipNum]; // Chip of interest + view->chip = chipNum; + + if (strcasecmp(phuType, "CHIP") == 0) { + level = PM_FPA_LEVEL_CHIP; + } else if (strcasecmp(phuType, "CELL") == 0) { + level = PM_FPA_LEVEL_CELL; + // Need to look up what cell we have. + psString cellName = phuNameFromHeader("CELL.NAME", fileInfo, header); + int cellNum = pmChipFindCell(chip, cellName); // Cell number + if (cellNum == -1) { + psError(PS_ERR_IO, true, "Unable to find cell %s in chip %s.\n", cellName, chipName); + psFree(view); + psFree(phdu); + return NULL; + } + cell = chip->cells->data[cellNum]; + view->cell = cellNum; + psFree(cellName); + } else { + // We have already dealt with the case PHU=FPA, in a special case above, so if we get here + // it's an error. + psError(PS_ERR_IO, true, "PHU is not FPA, CHIP or CELL.\n"); + psFree(phdu); + psFree(view); + return NULL; + } + psFree(chipName); + } + + if (install) { + const char *content = getContent(fileInfo, contents, chip, cell); // chip:cell:cellType triples + if (!content || strlen(content) == 0) { + psError(PS_ERR_IO, false, "Unable to get CONTENTS.\n"); + psFree(phdu); + psFree(view); + return NULL; + } + if (processContents(fpa, chip, cell, phdu, level, content, format) < 0) { + psError(PS_ERR_IO, false, "Error setting CONTENTS"); + psFree(phdu); + psFree(view); + return NULL; + } + } + psFree(phdu); + + if (install && header && !pmConceptsRead(fpa, chip, cell, PM_CONCEPT_SOURCE_PHU, NULL)) { + psWarning("Unable to read concepts from PHU.\n"); + } + return view; + } + + // Case 3: EXTENSIONS=CHIP or EXTENSIONS=CELL. We have extensions that we iterate through. The CONTENTS + // is a list of extensions. + phdu->blankPHU = true; + pmChip *chip = NULL; // The chip of interest + pmCell *cell = NULL; // The cell of interest + + // First, put in the PHU + if (strcasecmp(phuType, "FPA") == 0) { + addHDUtoFPA(fpa, phdu); + } else { + // Get the chip + psString chipName = phuNameFromHeader("CHIP.NAME", fileInfo, header); // Name of the chip + int chipNum = pmFPAFindChip(fpa, chipName); // Chip number + if (chipNum == -1) { + psError(PS_ERR_IO, true, "Unable to find chip %s in FPA.\n", chipName); + psFree(view); + return NULL; + } + chip = fpa->chips->data[chipNum]; // The specified chip + view->chip = chipNum; + + if (strcasecmp(phuType, "CHIP") == 0) { + addHDUtoChip(chip, phdu); + } else if (strcasecmp(phuType, "CELL") == 0) { + psString cellName = phuNameFromHeader("CELL.NAME", fileInfo, header); // Name of the cell + int cellNum = pmChipFindCell(chip, cellName); // Cell number + if (cellNum == -1) { + psError(PS_ERR_IO, true, "Unable to find cell %s in chip %s.\n", cellName, chipName); + psFree(view); + return NULL; + } + cell = chip->cells->data[cellNum]; // The specified cell + view->cell = cellNum; + psFree(cellName); + + addHDUtoCell(cell, phdu); + } else { + psError(PS_ERR_IO, true, "The format of the PHU (%s) is not FPA, CHIP or CELL.\n", phuType); + psFree(view); + return NULL; + } + psFree(chipName); + } + psFree(phdu); + + pmFPALevel level = hduLevel(format);// The level at which to plug in HDU + + // Now go through the contents + psMetadataIterator *contentsIter = psMetadataIteratorAlloc(contents, PS_LIST_HEAD, NULL); + psMetadataItem *contentsItem = NULL; // Item from contents + while ((contentsItem = psMetadataGetAndIncrement(contentsIter))) { + const char *extName = contentsItem->name; + if (contentsItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "CONTENTS item %s is not of type STR --- ignored.\n", extName); + continue; + } + + if (install) { + pmHDU *hdu = pmHDUAlloc(extName); // The extension + // Casting to avoid "warning: passing arg 1 of `p_psMemIncrRefCounter' discards qualifiers from + // pointer target type" + hdu->format = psMemIncrRefCounter((const psPtr)format); + + if (processContents(fpa, chip, cell, hdu, level, contentsItem->data.V, format) < 0) { + psError(PS_ERR_IO, false, "Error setting CONTENTS"); + psFree(view); + psFree(hdu); + psFree(contentsIter); + return NULL; + } + psFree(hdu); + } + } + psFree(contentsIter); + + if (install) { + if (!pmConceptsReadFPA(fpa, PM_CONCEPT_SOURCE_DEFAULTS, true, NULL)) { + psWarning("Unable to read concepts from defaults for FPA. Attempting to " + "proceed anyway.\n"); + } + + if (header && !pmConceptsRead(fpa, chip, cell, PM_CONCEPT_SOURCE_PHU, NULL)) { + psWarning("Unable to read concepts from PHU.\n"); + } + } + + return view; +} + + +bool pmFPAAddSourceFromView(pmFPA *fpa, const char *fpaname, const pmFPAview *phuView, + const psMetadata *format) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(phuView, false); + PS_ASSERT_PTR_NON_NULL(format, false); + + pmFPAview *view = addSource(fpa, fpaname, phuView, NULL, format, true); + bool status = (view != NULL); + psFree(view); + return status; +} + +pmFPAview *pmFPAAddSourceFromHeader(pmFPA *fpa, psMetadata *phu, const psMetadata *format) +{ + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + PS_ASSERT_PTR_NON_NULL(phu, NULL); + PS_ASSERT_PTR_NON_NULL(format, NULL); + + bool mdok = true; // Status from metadata lookups + psMetadata *fileInfo = psMetadataLookupMetadata(&mdok, format, "FILE"); // The file information + if (!mdok || !fileInfo) { + psError(PS_ERR_IO, false, "Unable to find FILE in the camera format configuration.\n"); + return NULL; + } + + // Check the name of the FPA + psString fpaname = phuNameFromHeader("FPA.NAME", fileInfo, phu); // New name for the FPA + if (!fpaname || strlen(fpaname) == 0) { + psError(PS_ERR_IO, true, "Unable to determine FPA.NAME: check for FPA.NAME in FILE in camera format"); + return NULL; + } + + pmFPAview *view = addSource(fpa, fpaname, NULL, phu, format, true); // View of PHU, to return + psFree(fpaname); + + return view; +} + + +pmFPAview *pmFPAIdentifySourceFromHeader(pmFPA *fpa, psMetadata *phu, const psMetadata *format) +{ + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + PS_ASSERT_PTR_NON_NULL(phu, NULL); + PS_ASSERT_PTR_NON_NULL(format, NULL); + + return addSource(fpa, NULL, NULL, phu, format, false); +} + + +// Print spaces to indent +#define INDENT(FILE, LEVEL) \ +{ \ + for (int i = 0; i < (LEVEL); i++) { \ + fprintf(FILE, " "); \ + } \ +} + +void pmFPAPrint(FILE *fd, const pmFPA *fpa, bool header, bool concepts) +{ + PS_ASSERT_PTR_NON_NULL(fpa,); + + INDENT(fd, 1); + fprintf(fd, "FPA:\n"); + if (fpa->hdu) { + pmHDUPrint(fd, fpa->hdu, 2, header); + } + if (concepts) { + psMetadataPrint(fd, fpa->concepts, 2); + } + + psArray *chips = fpa->chips; // Array of chips + // Iterate over the FPA + for (int i = 0; i < chips->n; i++) { + INDENT(fd, 3); + fprintf(fd, "Chip: %d\n", i); + pmChip *chip = chips->data[i]; // The chip + if (chip->hdu) { + pmHDUPrint(fd, chip->hdu, 4, header); + } + if (concepts) { + psMetadataPrint(fd, chip->concepts, 4); + } + + // Iterate over the chip + psArray *cells = chip->cells; // Array of cells + for (int j = 0; j < cells->n; j++) { + INDENT(fd, 5); + fprintf(fd, "Cell: %d\n", j); + pmCell *cell = cells->data[j]; // The cell + if (cell->hdu) { + pmHDUPrint(fd, cell->hdu, 6, header); + } + if (concepts) { + psMetadataPrint(fd, cell->concepts, 6); + } + + psArray *readouts = cell->readouts; // Array of readouts + for (int k = 0; k < readouts->n; k++) { + pmReadout *readout = readouts->data[k]; // The readout + INDENT(fd, 6); + fprintf(fd, "Readout %d:\n", k); + INDENT(fd, 7); + fprintf(fd, "col0: %d\n", readout->col0); + INDENT(fd, 7); + fprintf(fd, "row0: %d\n", readout->row0); + psImage *image = readout->image; // The image + psList *bias = readout->bias; // The list of bias images + if (image) { + INDENT(fd, 7); + fprintf(fd, "Image: [%d:%d,%d:%d] (%dx%d)\n", image->col0, image->col0 + + image->numCols, image->row0, image->row0 + image->numRows, image->numCols, + image->numRows); + } + if (bias) { + psListIterator *biasIter = psListIteratorAlloc(bias, PS_LIST_HEAD, false); // Iterator + psImage *biasImage = NULL; // Bias image from iteration + while ((biasImage = psListGetAndIncrement(biasIter))) { + INDENT(fd, 7); + fprintf(fd, "Bias: [%d:%d,%d:%d] (%dx%d)\n", biasImage->col0, + biasImage->col0 + biasImage->numCols, biasImage->row0, + biasImage->row0 + biasImage->numRows, biasImage->numCols, biasImage->numRows); + } + psFree(biasIter); + } + } // Iterating over cell + } // Iterating over chip + } // Iterating over FPA + +} + + +pmFPALevel pmFPAPHULevel(const psMetadata *format) +{ + PS_ASSERT_METADATA_NON_NULL(format, PM_FPA_LEVEL_NONE); + + bool mdok; // Status of MD lookup + psMetadata *fileInfo = psMetadataLookupMetadata(&mdok, format, "FILE"); // Contents of FILE metadata + if (!mdok || !fileInfo) { + psError(PS_ERR_UNKNOWN, true, "Unable to find FILE in camera format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + const char *phu = psMetadataLookupStr(&mdok, fileInfo, "PHU"); // PHU level + if (!mdok || !phu || strlen(phu) == 0) { + psError(PS_ERR_UNKNOWN, true, "Unable to find PHU in FILE in camera format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + + return pmFPALevelFromName(phu); +} + +pmFPALevel pmFPAExtensionsLevel(const psMetadata *format) +{ + PS_ASSERT_METADATA_NON_NULL(format, PM_FPA_LEVEL_NONE); + + bool mdok; // Status of MD lookup + psMetadata *fileInfo = psMetadataLookupMetadata(&mdok, format, "FILE"); // Contents of FILE metadata + if (!mdok || !fileInfo) { + psError(PS_ERR_UNKNOWN, true, "Unable to find FILE in camera format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + + const char *extensions = psMetadataLookupStr(&mdok, fileInfo, "EXTENSIONS"); // EXTENSIONS level + if (!mdok || !extensions || strlen(extensions) == 0) { + psError(PS_ERR_UNKNOWN, true, "Unable to find EXTENSIONS in FILE in camera format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + + return pmFPALevelFromName(extensions); +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAConstruct.h (revision 12167) @@ -0,0 +1,73 @@ +/* @file pmFPAConstruct.h + * @brief Functions to create an FPA, and add data sources to it. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-15 00:51:20 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_CONSTRUCT_H +#define PM_FPA_CONSTRUCT_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include +#include "pmFPA.h" +#include "pmFPAview.h" + +/// Construct an FPA instance on the basis of a camera configuration +/// +/// This is the function that creates the FPA hierarchy on the basis of the camera configuration. The "FPA" +/// entry in the camera configuration specifies the chips (each of type STR) with their component cells listed +/// as the corresponding values (whitespace separated). The FPA hierarchy is created devoid of any +/// input/output sources (i.e., HDUs). +pmFPA *pmFPAConstruct(const psMetadata *camera ///< The camera configuration + ); + +/// Add an (input or output) source to the focal plane hierarchy, specified by a view +/// +/// Given an FPA, add an HDU by specifying where it goes (i.e., by an FPAview). The camera format +/// configuration is required in order to describe how the FPA is laid out in terms of disk files. +bool pmFPAAddSourceFromView(pmFPA *fpa, ///< The FPA + const char *fpaname, ///< FPA.NAME for the source + const pmFPAview *phuView, ///< The view, corresponding to the PHU + const psMetadata *format ///< Format of file + ); + +/// Add an (input or output) source to the focal plane hierarchy, specified by a (primary) header +/// +/// Given an FPA, add an HDU by specifying a primary header, which is used to determine the FITS file +/// contents, and therefore the proper location for the HDU. The camera format configuration is required in +/// order to describe how the FPA is laid out in terms of disk files. +pmFPAview *pmFPAAddSourceFromHeader(pmFPA *fpa, ///< The FPA + psMetadata *phu, ///< Primary header of file + const psMetadata *format ///< Format of file + ); + +/// Identify a source in the focal plane hierarchy, specified by a (primary) header +/// +/// This is the same as pmFPAAddSourceFromHeader, except the input is not added into the FPA hierarchy. +/// This function serves only to identify where in the hierarchy it should go, not prepare for reading, etc. +pmFPAview *pmFPAIdentifySourceFromHeader(pmFPA *fpa, psMetadata *phu, const psMetadata *format); + +/// Print a representation of the FPA, including its headers and concepts. +/// +/// This function is intended for testing and development purposes. +void pmFPAPrint(FILE *fd, ///< File descriptor to which to print + const pmFPA *fpa, ///< FPA to print + bool header, ///< Print headers? + bool concepts ///< Print concepts? + ); + +/// Return the PHU level for an FPA, given the format +pmFPALevel pmFPAPHULevel(const psMetadata *format); + +/// Return the Extensions level for an FPA, given the format +pmFPALevel pmFPAExtensionsLevel(const psMetadata *format); + +/// @} + +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPACopy.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPACopy.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPACopy.c (revision 12167) @@ -0,0 +1,465 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include + +#include "pmFPA.h" +#include "pmFPAUtils.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" + +#include "pmFPACopy.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Bin a region down by specified factors in x and y +static void binRegion(psRegion *region, // Region to be binned + int xBin, int yBin // Binning in x and y + ) +{ + assert(region); + assert(xBin > 0); + assert(yBin > 0); + + // Want to include the lower bound: 1 binned by 4 --> 0; 3 binned by 4 --> 0; 4 binned by 4 --> 1 + region->x0 = (int)(region->x0 / xBin); + region->y0 = (int)(region->y0 / yBin); + // Want to exclude the upper bound: 4 binned by 4 --> 1; 5 binned by 4 --> 2; 7 binned by 4 --> 2 + region->x1 = (int)((region->x1 + xBin - 1) / xBin); + region->y1 = (int)((region->y1 + yBin - 1) / yBin); +} + +#if 1 +// Find the blank (image-less) PHU, given a cell. +static pmHDU *findBlankPHU(const pmCell *cell // The cell for which to find the PHU + ) +{ + assert(cell); + + if (cell->hdu && cell->hdu->blankPHU) { + return cell->hdu; + } + pmChip *chip = cell->parent; // The parent chip + if (chip->hdu && chip->hdu->blankPHU) { + return chip->hdu; + } + pmFPA *fpa = chip->parent; // The parent FPA + if (fpa->hdu && fpa->hdu->blankPHU) { + return fpa->hdu; + } + + return NULL; +} +#endif + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static engine functions --- these do all the work. Actually, cellCopy does all the work; the others +// merely iterate on the higher-level components. +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Common engine for pmCellCopy and pmCellCopyStructure +// Does the actual splitting/splicing that's required to copy an FPA to a different representation. +static bool cellCopy(pmCell *target, // The target cell + const pmCell *source, // The source cell, to be copied + bool pixels, // Copy the pixels? + int xBin, int yBin // (Relative) binning factors in x and y + ) +{ + assert(target); + assert(source); + assert(xBin > 0 && yBin > 0); + + psArray *sourceReadouts = source->readouts; // The source readouts + int numReadouts = sourceReadouts->n; // Number of readouts copied + + // Copy the value for a concept + #define COPY_CONCEPT(TARGET, SOURCE, NAME, TYPE) \ + psMetadataItem *targetItem = psMetadataLookup(TARGET, NAME); \ + psMetadataItem *sourceItem = psMetadataLookup(SOURCE, NAME); \ + targetItem->data.TYPE = sourceItem->data.TYPE; + + // Need to check/change CELL.XPARITY and CELL.YPARITY + bool mdok = true; // Status of MD lookup + bool xFlip = false; // Switch parity in x? + bool yFlip = false; // Switch parity in y? + { + int xParityTarget = psMetadataLookupS32(&mdok, target->concepts, "CELL.XPARITY"); // Target x parity + if (mdok && (xParityTarget == 1 || xParityTarget == -1)) + { + int xParitySource = psMetadataLookupS32(&mdok, source->concepts, "CELL.XPARITY"); // Source parity + if (mdok && (xParitySource == 1 || xParitySource == -1) && xParityTarget != xParitySource) { + xFlip = true; + } + } else + { + // Use the source parity + COPY_CONCEPT(target->concepts, source->concepts, "CELL.XPARITY", S32); + } + int yParityTarget = psMetadataLookupS32(&mdok, target->concepts, "CELL.YPARITY"); // Target y parity + if (mdok && (yParityTarget == 1 || yParityTarget == -1)) + { + int yParitySource = psMetadataLookupS32(&mdok, source->concepts, "CELL.YPARITY"); // Source parity + if (mdok && (yParitySource == 1 || yParitySource == -1) && yParityTarget != yParitySource) { + yFlip = true; + } + } else + { + // Use the source parity + COPY_CONCEPT(target->concepts, source->concepts, "CELL.YPARITY", S32); + } + psTrace("psModules.camera", 3, "xFlip: %d; yFlip: %d\n", xFlip, yFlip); + } + + if (pixels && (xBin != 1 || yBin != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to copy pixels if binning is set --- copy turned off.\n"); + pixels = false; + } + + // Perform deep copy of the images. I would prefer *not* to do a deep copy, in the interests of speed (we + // still need to do another deep copy into the HDU for when we write out), but this is the only way I can + // think of to provide security against copying a cell and then unknowingly changing the source when + // manipulating the target. + for (int i = 0; i < numReadouts; i++) { + pmReadout *sourceReadout = sourceReadouts->data[i]; // The source readout + pmReadout *targetReadout = pmReadoutAlloc(target); // The target readout; this adds it to the cell + + // Copy attributes + targetReadout->col0 = sourceReadout->col0; + targetReadout->row0 = sourceReadout->row0; + targetReadout->process = sourceReadout->process; + targetReadout->file_exists = sourceReadout->file_exists; + targetReadout->data_exists = sourceReadout->data_exists; + + // Copy image + if (sourceReadout->image) { + if (targetReadout->image) { + psFree(targetReadout->image); + } + if (pixels) { + targetReadout->image = psImageFlip(NULL, sourceReadout->image, xFlip, yFlip); + } else { + psImage *image = sourceReadout->image; // The source image + long binnedCols = (image->numCols + xBin - 1) / xBin; + long binnedRows = (image->numRows + yBin - 1) / yBin; + targetReadout->image = psImageAlloc(binnedCols, binnedRows, image->type.type); + } + } + + // Copy mask + if (sourceReadout->mask) { + if (targetReadout->mask) { + psFree(targetReadout->mask); + } + if (pixels) { + targetReadout->mask = psImageFlip(NULL, sourceReadout->mask, xFlip, yFlip); + } else { + psImage *mask = sourceReadout->mask; // The source mask image + long binnedCols = (mask->numCols + xBin - 1) / xBin; + long binnedRows = (mask->numRows + yBin - 1) / yBin; + targetReadout->mask = psImageAlloc(binnedCols, binnedRows, mask->type.type); + } + } + + // Copy weight + if (sourceReadout->weight) { + if (targetReadout->weight) { + psFree(targetReadout->weight); + } + if (pixels) { + targetReadout->weight = psImageFlip(NULL, sourceReadout->weight, xFlip, yFlip); + } else { + psImage *weight = sourceReadout->weight; // The source weight image + long binnedCols = (weight->numCols + xBin - 1) / xBin; + long binnedRows = (weight->numRows + yBin - 1) / yBin; + targetReadout->weight = psImageAlloc(binnedCols, binnedRows, weight->type.type); + } + } + + // Copy bias + while (targetReadout->bias->n > 0) { + psListRemove(targetReadout->bias, PS_LIST_HEAD); + } + // Iterate over the biases + psListIterator *biasIter = psListIteratorAlloc(sourceReadout->bias, PS_LIST_HEAD, false); + psImage *bias = NULL; // Bias image from iteration + while ((bias = psListGetAndIncrement(biasIter))) { + psImage *biasCopy; // Copy of the bias + if (pixels) { + biasCopy = psImageFlip(NULL, bias, xFlip, yFlip); + } else { + long binnedCols = (bias->numCols + xBin - 1) / xBin; + long binnedRows = (bias->numRows + yBin - 1) / yBin; + biasCopy = psImageAlloc(binnedCols, binnedRows, bias->type.type); + } + psListAdd(targetReadout->bias, PS_LIST_TAIL, biasCopy); + psFree(biasCopy); // Drop reference + } + psFree(biasIter); + + targetReadout->data_exists = true; + psFree(targetReadout); // Drop reference + } + + // Copy the remaining "concepts" over. Don't copy the TRIMSEC or BIASSEC, since these will be created by + // pmHDUGenerate if they don't already exist in the target. Don't copy the XPARITY or YPARITY, since + // we've used those to do the flips. Don't copy the X0 and Y0 because they are updated below (and are + // dependent upon the flips we've done above). + psMetadataIterator *conceptsIter = psMetadataIteratorAlloc(source->concepts, PS_LIST_HEAD, NULL); + psMetadataItem *conceptItem = NULL; // Item from iteration + while ((conceptItem = psMetadataGetAndIncrement(conceptsIter))) { + psString name = conceptItem->name; // Name of concept + if (strcmp(name, "CELL.TRIMSEC") != 0 && strcmp(name, "CELL.BIASSEC") != 0 && + strcmp(name, "CELL.XPARITY") != 0 && strcmp(name, "CELL.YPARITY") != 0 && + strcmp(name, "CELL.X0") != 0 && strcmp(name, "CELL.Y0") != 0) { + psMetadataItem *copy = psMetadataItemCopy(conceptItem); // Copy of the concept + psMetadataAddItem(target->concepts, copy, PS_LIST_TAIL, PS_META_REPLACE); + psFree(copy); // Drop reference + } + } + psFree(conceptsIter); + + // Need to update CELL.TRIMSEC and CELL.BIASSEC if we changed the binning and they exist already. + if (xBin != 1 || yBin != 1) { + psRegion *trimsec = psMetadataLookupPtr(&mdok, target->concepts, "CELL.TRIMSEC"); // The trim section + if (mdok && trimsec && !psRegionIsNaN(*trimsec)) { + binRegion(trimsec, xBin, yBin); + } + psList *biassecs = psMetadataLookupPtr(&mdok, target->concepts, "CELL.BIASSEC"); // The bias sections + if (mdok && biassecs && biassecs->n > 0) { + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, true); // Iterator + psRegion *biassec = NULL; // Bias section, from iteration + while ((biassec = psListGetAndIncrement(biassecsIter))) { + if (!psRegionIsNaN(*biassec)) { + binRegion(biassec, xBin, yBin); + } + } + psFree(biassecsIter); + } + } + + // Need to update CELL.X0 and CELL.Y0 if we flipped + if (xFlip) { + int xZero = psMetadataLookupS32(NULL, source->concepts, "CELL.X0"); // CELL.X0 from source + int xParity = psMetadataLookupS32(NULL, source->concepts, "CELL.XPARITY"); // Parity in x + int sourceBin = psMetadataLookupS32(NULL, source->concepts, "CELL.XBIN"); // CELL.XBIN from source + int xSize = psMetadataLookupS32(NULL, source->concepts, "CELL.XSIZE"); // CELL.XSIZE of source + + if (sourceBin == 0) { + // Don't know the binning; assume it is unity + sourceBin = xBin; + } + + psTrace("psModules.camera", 3, "CELL.X0: Before: %d After: %d\n", xZero, + xZero + (xSize - 1) * xParity * sourceBin); + psTrace("psModules.camera", 9, "(xParity: %d xBin: %d numCols: %d)\n", xParity, sourceBin, xSize); + + if (xParity == 0 || xSize == 0) { + psWarning("New CELL.X0 may be incorrect due to missing concepts (CELL.XPARITY, CELL.XSIZE)"); + } + + xZero += (xSize - 1) * xParity * sourceBin; // Change the parity on the X0 position + psMetadataItem *newItem = psMetadataLookup(target->concepts, "CELL.X0"); // CELL.X0 from target + newItem->data.S32 = xZero; + } + if (yFlip) { + int yZero = psMetadataLookupS32(NULL, source->concepts, "CELL.Y0"); // CELL.Y0 from source + int yParity = psMetadataLookupS32(NULL, source->concepts, "CELL.YPARITY"); // Parity in y + int sourceBin = psMetadataLookupS32(NULL, source->concepts, "CELL.YBIN"); // Binning in y + int ySize = psMetadataLookupS32(NULL, source->concepts, "CELL.YSIZE"); // CELL.YSIZE of source + + if (sourceBin == 0) { + // Don't know the binning; assume it is unity + sourceBin = yBin; + } + + psTrace("psModules.camera", 3, "CELL.Y0: Before: %d After: %d\n", yZero, + yZero + (ySize - 1) * yParity * sourceBin); + psTrace("psModules.camera", 9, "(yParity: %d yBin: %d numRows: %d)\n", yParity, sourceBin, ySize); + + if (yParity == 0 || ySize == 0) { + psWarning("New CELL.Y0 may be incorrect due to missing concepts " + "(CELL.Y0, CELL.YPARITY, CELL.YBIN, CELL.YSIZE)"); + } + + yZero += (ySize - 1) * yParity * sourceBin; // Change the parity on the Y0 position + psMetadataItem *newItem = psMetadataLookup(target->concepts, "CELL.Y0"); // CELL.Y0 from target + newItem->data.S32 = yZero; + } + + // Update the binning concepts + psMetadataItem *binItem = psMetadataLookup(target->concepts, "CELL.XBIN"); + binItem->data.S32 *= xBin; + binItem = psMetadataLookup(target->concepts, "CELL.YBIN"); + binItem->data.S32 *= yBin; + + // Copy any headers + pmHDU *targetHDU = pmHDUFromCell(target); // The target HDU + if (targetHDU) { + if (!targetHDU->header) { + targetHDU->header = psMetadataAlloc(); + } + pmHDU *sourceHDU = pmHDUFromCell(source); // The source HDU + if (sourceHDU->header) { + targetHDU->header = psMetadataCopy(targetHDU->header, sourceHDU->header); + } + } + + // Copy the PHU over as well, if required + pmHDU *targetPHU = findBlankPHU(target); // The target PHU + if (targetPHU && targetPHU != targetHDU) { + if (!targetPHU->header) { + targetPHU->header = psMetadataAlloc(); + } +// pmHDU *sourcePHU = pmHDUGetHighest(source->parent->parent, source->parent, source); // A source HDU + pmHDU *sourcePHU = findBlankPHU(source); // The target PHU + if (sourcePHU && sourcePHU->header) { + targetPHU->header = psMetadataCopy(targetPHU->header, sourcePHU->header); + } + } + + target->data_exists = true; + return true; +} + +// Common engine for pmChipCopy and pmChipCopyStructure +// Iterate on the components +static bool chipCopy(pmChip *target, // The target chip + const pmChip *source, // The source chip, to be copied + bool pixels, // Copy the pixels? + int xBin, int yBin // (Relative) binning factors in x and y + ) +{ + assert(target); + assert(source); + assert(xBin > 0); + assert(yBin > 0); + + psArray *targetCells = target->cells; // The target cells + psArray *sourceCells = source->cells; // The source cells + if (targetCells->n != sourceCells->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Number of source cells (%ld) differs from the number of target cells (%ld)\n", + sourceCells->n, targetCells->n); + return false; + } + + bool status = true; // Status of copy + for (int i = 0; i < targetCells->n; i++) { + pmCell *targetCell = targetCells->data[i]; // The target cell + const char *cellName = psMetadataLookupStr(NULL, targetCell->concepts, "CELL.NAME"); // Name of cell + int cellNum = pmChipFindCell(source, cellName); // Number of cell with that name + if (cellNum >= 0) { + pmCell *sourceCell = sourceCells->data[cellNum]; // The source cell + status &= cellCopy(targetCell, sourceCell, pixels, xBin, yBin); + } + } + + // Update the concepts + psMetadataItem *chipName = psMemIncrRefCounter(psMetadataLookup(target->concepts, "CHIP.NAME")); + psMetadataCopy(target->concepts, source->concepts); + psMetadataAddItem(target->concepts, chipName, PS_LIST_TAIL, PS_META_REPLACE); + psFree(chipName); + psMetadataCopy(target->parent->concepts, source->parent->concepts); + + target->data_exists = true; + return status; +} + +// Common engine for pmFPACopy and pmFPACopyStructure. +// Iterate on the components +static bool fpaCopy(pmFPA *target, // The target FPA + const pmFPA *source, // The source FPA, to be copied + bool pixels, // Copy the pixels? + int xBin, int yBin // (Relative) binning factors in x and y + ) +{ + assert(target); + assert(source); + assert(xBin > 0); + assert(yBin > 0); + + psArray *targetChips = target->chips; // The target chips + psArray *sourceChips = source->chips; // The source chips + if (targetChips->n != sourceChips->n) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Number of source chips (%ld) differs from the number of target chips (%ld)\n", + sourceChips->n, targetChips->n); + return false; + } + + bool status = true; // Status of copy + for (int i = 0; i < targetChips->n; i++) { + pmChip *targetChip = targetChips->data[i]; // The target chip + const char *chipName = psMetadataLookupStr(NULL, targetChip->concepts, "CHIP.NAME"); // Name of chip + int chipNum = pmFPAFindChip(source, chipName); // Number of chip with that name + if (chipNum >= 0) { + pmChip *sourceChip = sourceChips->data[chipNum]; // The source chip + status &= chipCopy(targetChip, sourceChip, pixels, xBin, yBin); + } + } + + // Update the concepts + psMetadataCopy(target->concepts, source->concepts); + + return status; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmFPACopy(pmFPA *target, const pmFPA *source) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + return fpaCopy(target, source, true, 1, 1); +} + +bool pmChipCopy(pmChip *target, const pmChip *source) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + return chipCopy(target, source, true, 1, 1); +} + +bool pmCellCopy(pmCell *target, const pmCell *source) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + return cellCopy(target, source, true, 1, 1); +} + + +bool pmFPACopyStructure(pmFPA *target, const pmFPA *source, int xBin, int yBin) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_INT_POSITIVE(xBin, false); + PS_ASSERT_INT_POSITIVE(yBin, false); + return fpaCopy(target, source, false, xBin, yBin); +} + +bool pmChipCopyStructure(pmChip *target, const pmChip *source, int xBin, int yBin) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_INT_POSITIVE(xBin, false); + PS_ASSERT_INT_POSITIVE(yBin, false); + return chipCopy(target, source, false, xBin, yBin); +} + +bool pmCellCopyStructure(pmCell *target, const pmCell *source, int xBin, int yBin) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_INT_POSITIVE(xBin, false); + PS_ASSERT_INT_POSITIVE(yBin, false); + return cellCopy(target, source, false, xBin, yBin); +} Index: /branches/rel-1-1/psModules/src/camera/pmFPACopy.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPACopy.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPACopy.h (revision 12167) @@ -0,0 +1,75 @@ +/* @file pmFPACopy.h + * @brief Functions to copy FPA components. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_COPY_H +#define PM_FPA_COPY_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// Copy an FPA and components, including the pixels, to a different representation of the same camera +/// +/// This function is useful for converting between different representations of the same camera. For example, +/// between Megacam "RAW" (one amp per extension) and Megacam "SPLICED" formats (two amps = 1 chip per +/// extension, spliced together). Components are spliced together as necessary. +bool pmFPACopy(pmFPA *target, ///< The target FPA + const pmFPA *source ///< The source FPA, to be copied + ); + +/// Copy a chip and components, including the pixels, to a different representation of the same camera +/// +/// This function is useful for converting between different representations of the same camera. For example, +/// between Megacam "RAW" (one amp per extension) and Megacam "SPLICED" formats (two amps = 1 chip per +/// extension, spliced together). Components are spliced together as necessary. +bool pmChipCopy(pmChip *target, ///< The target chip + const pmChip *source ///< The source chip, to be copied + ); + +/// Copy a cell and components, including the pixels, to a different representation of the same camera +/// +/// This function is useful for converting between different representations of the same camera. For example, +/// between Megacam "RAW" (one amp per extension) and Megacam "SPLICED" formats (two amps = 1 chip per +/// extension, spliced together). Components are spliced together as necessary. +bool pmCellCopy(pmCell *target, ///< The target cell + const pmCell *source ///< The source cell, to be copied + ); + + +/// Copy an FPA, but not the pixels, to a different representation of the same camera +/// +/// This function the same as pmFPACopy, except that the pixels are not copied (though images of sufficient +/// size are allocated in the target). Changes the CELL.XBIN and CELL.YBIN according to the provided binning +/// factors. +bool pmFPACopyStructure(pmFPA *target, ///< The target FPA + const pmFPA *source, ///< The source FPA, to be copied + int xBin, int yBin ///< Binning factors in x and y + ); + +/// Copy a chip, but not the pixels, to a different representation of the same camera +/// +/// This function the same as pmChipCopy, except that the pixels are not copied (though images of sufficient +/// size are allocated in the target). Changes the CELL.XBIN and CELL.YBIN according to the provided binning +/// factors. +bool pmChipCopyStructure(pmChip *target, ///< The target chip + const pmChip *source, ///< The source chip, to be copied + int xBin, int yBin ///< Binning factors in x and y + ); + +/// Copy a cell, but not the pixels, to a different representation of the same camera +/// +/// This function the same as pmCellCopy, except that the pixels are not copied (though images of sufficient +/// size are allocated in the target). Changes the CELL.XBIN and CELL.YBIN according to the provided binning +/// factors. +bool pmCellCopyStructure(pmCell *target, ///< The target cell + const pmCell *source, ///< The source cell, to be copied + int xBin, int yBin ///< Binning factors in x and y + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAExtent.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAExtent.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAExtent.c (revision 12167) @@ -0,0 +1,128 @@ +#include +#include + +#include "pmFPA.h" + +psRegion *pmReadoutExtent(const pmReadout *readout) +{ + PS_ASSERT_PTR_NON_NULL(readout, NULL); + + if (readout->image) { + return psRegionAlloc(readout->col0, readout->image->numCols, + readout->row0, readout->image->numRows); + } + pmCell *cell = readout->parent; // The parent cell + if (!cell) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to determine size of readout.\n"); + return NULL; + } + bool mdok; // Status of MD lookup + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || !trimsec) { + psError(PS_ERR_UNKNOWN, true, "Unable to find CELL.TRIMSEC.\n"); + return NULL; + } + + // XXX: Binning? + + return psRegionAlloc(readout->col0, trimsec->x1 - trimsec->x0, + readout->row0, trimsec->y1 - trimsec->y0); +} + + +psRegion *pmCellExtent(const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, NULL); + + psArray *readouts = cell->readouts; // Array of component readouts + psRegion *cellExtent = psRegionAlloc(INFINITY, 0, INFINITY, 0); // Extent of cell + for (long i = 0; i < readouts->n; i++) { + pmReadout *readout = readouts->data[i]; // Readout of interest + psRegion *roExtent = pmReadoutExtent(readout); // Extent of readout + cellExtent->x0 = PS_MIN(cellExtent->x0, roExtent->x0); + cellExtent->x1 = PS_MAX(cellExtent->x1, roExtent->x1); + cellExtent->y0 = PS_MIN(cellExtent->y0, roExtent->y0); + cellExtent->y1 = PS_MAX(cellExtent->y1, roExtent->y1); + psFree(roExtent); + } + + bool mdok; // Status of MD lookup + int x0 = psMetadataLookupS32(&mdok, cell->concepts, "CELL.X0"); // Cell x offset + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "Unable to find CELL.X0.\n"); + psFree(cellExtent); + return NULL; + } + int y0 = psMetadataLookupS32(&mdok, cell->concepts, "CELL.Y0"); // Cell y offset + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "Unable to find CELL.Y0.\n"); + psFree(cellExtent); + return NULL; + } + + cellExtent->x0 += x0; + cellExtent->x1 += x0; + cellExtent->y0 += y0; + cellExtent->y1 += y0; + + return cellExtent; +} + + +psRegion *pmChipExtent(const pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip, NULL); + + psArray *cells = chip->cells; // Arrya of component cells + psRegion *chipExtent = psRegionAlloc(INFINITY, 0, INFINITY, 0); // Extent of chip + for (long i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + psRegion *cellExtent = pmCellExtent(cell); // Extent of cell + chipExtent->x0 = PS_MIN(chipExtent->x0, cellExtent->x0); + chipExtent->x1 = PS_MAX(chipExtent->x1, cellExtent->x1); + chipExtent->y0 = PS_MIN(chipExtent->y0, cellExtent->y0); + chipExtent->y1 = PS_MAX(chipExtent->y1, cellExtent->y1); + psFree(cellExtent); + } + + bool mdok; // Status of MD lookup + int x0 = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.X0"); // Chip x offset + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "Unable to find CHIP.X0.\n"); + psFree(chipExtent); + return NULL; + } + int y0 = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.Y0"); // Chip y offset + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "Unable to find CHIP.Y0.\n"); + psFree(chipExtent); + return NULL; + } + + chipExtent->x0 += x0; + chipExtent->x1 += x0; + chipExtent->y0 += y0; + chipExtent->y1 += y0; + + return chipExtent; +} + + +psRegion *pmFPAExtent(const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + psArray *chips = fpa->chips; // Arrya of component chips + psRegion *fpaExtent = psRegionAlloc(INFINITY, 0, INFINITY, 0); // Extent of fpa + for (long i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + psRegion *chipExtent = pmChipExtent(chip); // Extent of chip + fpaExtent->x0 = PS_MIN(fpaExtent->x0, chipExtent->x0); + fpaExtent->x1 = PS_MAX(fpaExtent->x1, chipExtent->x1); + fpaExtent->y0 = PS_MIN(fpaExtent->y0, chipExtent->y0); + fpaExtent->y1 = PS_MAX(fpaExtent->y1, chipExtent->y1); + psFree(chipExtent); + } + + return fpaExtent; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPAExtent.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAExtent.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAExtent.h (revision 12167) @@ -0,0 +1,41 @@ +/* @file pmPFAExtent.h + * + * @author Paul Price, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_EXTENT_H +#define PM_FPA_EXTENT_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// Return the extent of a readout +/// +/// The extent is determined from an image, if present, or the CELL.TRIMSEC otherwise. +psRegion *pmReadoutExtent(const pmReadout *readout ///< The readout of interest + ); + +/// Return the extent of a cell +/// +/// The extent is determined from the extent of the component readouts, plus CELL.X0,Y0 +psRegion *pmCellExtent(const pmCell *cell ///< The cell of interest + ); + +/// Return the extent of a chip +/// +/// The extent is determined from the extent of the component cells, plus CHIP.X0,Y0 +psRegion *pmChipExtent(const pmChip *chip ///< The chip of interest + ); + +/// Return the extent of an FPA +/// +/// The extent is determined from the extent of the component chips. +psRegion *pmFPAExtent(const pmFPA *fpa ///< The FPA of interest + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAFlags.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAFlags.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAFlags.c (revision 12167) @@ -0,0 +1,263 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "pmFPA.h" +#include "pmFPAFlags.h" + + +/** functions to turn on/off the file_exists flag **/ +bool pmFPASetFileStatus(pmFPA *fpa, bool status) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + pmChipSetFileStatus (chip, status); + } + return true; +} + +bool pmChipSetFileStatus(pmChip *chip, bool status) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + + chip->file_exists = status; + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; + pmCellSetFileStatus (cell, status); + } + return true; +} + +bool pmCellSetFileStatus(pmCell *cell, bool status) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + + cell->file_exists = status; + for (int i = 0; i < cell->readouts->n; i++) { + pmReadout *readout = cell->readouts->data[i]; + readout->file_exists = status; + } + return true; +} + +bool pmFPACheckFileStatus(const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + if (!pmChipCheckFileStatus(chip)) { + return false; + } + } + return true; +} + +bool pmChipCheckFileStatus(const pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + if (!chip->file_exists) { + return false; + } + + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; + if (!pmCellCheckFileStatus(cell)) { + return false; + } + } + return true; +} + +bool pmCellCheckFileStatus(const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + if (!cell->file_exists) { + return false; + } + + for (int i = 0; i < cell->readouts->n; i++) { + pmReadout *readout = cell->readouts->data[i]; + if (!readout->file_exists) { + return false; + } + } + return true; +} + +/** functions to turn on/off the data_exists flag **/ +bool pmFPASetDataStatus(pmFPA *fpa, bool status) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + pmChipSetDataStatus (chip, status); + } + return true; +} + +bool pmChipSetDataStatus(pmChip *chip, bool status) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + + chip->data_exists = status; + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; + pmCellSetDataStatus (cell, status); + } + return true; +} + +bool pmCellSetDataStatus (pmCell *cell, bool status) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + + cell->data_exists = status; + for (int i = 0; i < cell->readouts->n; i++) { + pmReadout *readout = cell->readouts->data[i]; + readout->data_exists = status; + } + return true; +} + + +// Set cells within a chip to be processed or not +static bool setCellsProcess(const pmChip *chip, // Chip of interest + bool process // Process this chip? + ) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + + psArray *cells = chip->cells; // Component cells + if (! cells) { + return false; + } + for (int i = 0; i < cells->n; i++) { + pmCell *tmpCell = cells->data[i]; // Cell of interest + if (tmpCell) { + tmpCell->process = process; + } + } + + return true; +} + + +bool pmFPASelectChip(pmFPA *fpa, int chipNum, bool exclusive) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + + psArray *chips = fpa->chips; // Component chips + if ((chips == NULL) || (chipNum >= chips->n)) { + return(false); + } + + for (int i = 0 ; i < chips->n ; i++) { + pmChip *tmpChip = (pmChip *) chips->data[i]; + if (tmpChip == NULL) { + continue; + } + if (i == chipNum) { + tmpChip->process = true; + setCellsProcess(tmpChip, true); + } else { + if (exclusive) { + tmpChip->process = false; + setCellsProcess(tmpChip, false); + } + } + + } + + return true; +} + +// XXX this function should probably be re-defined to merge with 'setCellsProcess' +bool pmChipSelectCell(pmChip *chip, int cellNum, bool exclusive) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + + psArray *cells = chip->cells; // Component cells + if (!cells || cellNum > cells->n) { + return false; + } + + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; + if (!cell) { + continue; + } + if (i == cellNum) { + cell->process = true; + } else { + if (exclusive) { + cell->process = false; + } + } + } + return true; +} + + +int pmFPAExcludeChip(pmFPA *fpa, int chipNum) +{ + PS_ASSERT_PTR_NON_NULL(fpa, -1); + + psArray *chips = fpa->chips; // Component chips + if (chips == NULL) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: fpa->chips == NULL\n"); + return(0); + } + if ((chipNum >= chips->n) || (NULL == (pmChip *) chips->data[chipNum])) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: the specified chip (%d) does not exist.\n", chipNum); + return(0); + } + + int numChips = 0; // Number of chips to be processed + for (int i = 0 ; i < chips->n ; i++) { + pmChip *tmpChip = (pmChip *) chips->data[i]; // Chip of interest + if (tmpChip != NULL) { + if (i == chipNum) { + tmpChip->process = false; + setCellsProcess(tmpChip, false); // Wipe out the cell as well + } else if (tmpChip->process) { + numChips++; + } + } + } + + return(numChips); +} + + +int pmChipExcludeCell(pmChip *chip, int cellNum) +{ + PS_ASSERT_PTR_NON_NULL(chip, -1); + + psArray *cells = chip->cells; // The component cells + if (!cells || cellNum > cells->n) { + return 0; + } + + int numCells = 0; // Number of cells to be processed + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; + if (!cell) { + continue; + } + if (i == cellNum) { + cell->process = false; + } else { + numCells++; + } + } + + return numCells; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAFlags.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAFlags.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAFlags.h (revision 12167) @@ -0,0 +1,100 @@ +/* @file pmFPAFlags.h + * @brief Functions for setting and checking the status flags within the FPA hierarchy + * + * @author George Gusciora, MHPCC + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_FLAGS_H +#define PM_FPA_FLAGS_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" + + +// Functions to turn on/off the file_exists flags + +/// Set the file_exists flag for an FPA and components +bool pmFPASetFileStatus(pmFPA *fpa, ///< FPA for which to set status + bool status ///< Status to set + ); + +/// Set the file_exists flag for a chip and components +bool pmChipSetFileStatus(pmChip *chip, ///< Chip for which to set status + bool status ///< Status to set + ); + +/// Set the file_exists flag for a cell and components +bool pmCellSetFileStatus(pmCell *cell, ///< Cell for which to set status + bool status ///< Status to set + ); + +// Functions to check the file_exists flags + +/// Return the file_exists status for an FPA and components +bool pmFPACheckFileStatus(const pmFPA *fpa ///< FPA for which to check status + ); + +/// Return the file_exists status for a chip and components +bool pmChipCheckFileStatus(const pmChip *chip ///< Chip for which to check status + ); + +/// Return the file_exists status for a chip and components +bool pmCellCheckFileStatus(const pmCell *cell ///< Cell for which to check status + ); + +// Functions to turn on/off the data_exists flags + +/// Set the data_exists flag for an FPA and components +bool pmFPASetDataStatus(pmFPA *fpa, ///< FPA for which to set status + bool status ///< Status to set + ); + +/// Set the data_exists flag for a chip and components +bool pmChipSetDataStatus(pmChip *chip, ///< Chip for which to set status + bool status ///< Status to set + ); + +/// Set the data_exists flag for a cell and components +bool pmCellSetDataStatus(pmCell *cell, ///< Cell for which to set status + bool status ///< Status to set + ); + +// Functions to set the process flags + +/// Select a chip within an FPA for processing +/// +/// If exclusive is true, the specified chip is the only chip to be processed. A negative value for chipNum +/// is valid and, in combinations with exclusive, de-selects all chips. +bool pmFPASelectChip(pmFPA *fpa, ///< FPA containing the chip of interest + int chipNum, ///< Chip number to select + bool exclusive ///< Process this chip exclusive of the others? + ); + +/// Select a chip within a chip for processing +/// +/// If exclusive is true, the specified cell is the only chip to be processed. A negative value for cellNum +/// is valid and, in combinations with exclusive, de-selects all chips. +bool pmChipSelectCell(pmChip *chip, ///< Chip containing the cell of interest + int cellNum, ///< Cell number to select + bool exclusive ///< Process this cell exclusive of the others? + ); + +/// Exclude a chip within an FPA from processing +int pmFPAExcludeChip(pmFPA *fpa, ///< FPA containing the chip of interest + int chipNum ///< Chip number to exclude + ); + +/// Exclude a cell within a chip from processing +int pmChipExcludeCell(pmChip *chip, ///< Chip containing the chip of interest + int cellNum ///< Cell number to exclude + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAHeader.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAHeader.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAHeader.c (revision 12167) @@ -0,0 +1,75 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmConcepts.h" +#include "pmFPAHeader.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmCellReadHeader(pmCell *cell, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + if (!cell->hdu) { + return pmChipReadHeader(cell->parent, fits); + } + if (!pmHDUReadHeader(cell->hdu, fits)) { + psError(PS_ERR_IO, false, "Unable to read header for cell.\n"); + return false; + } + + return pmConceptsReadCell(cell, PM_CONCEPT_SOURCE_HEADER, false, NULL); +} + + +bool pmChipReadHeader(pmChip *chip, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + if (!chip->hdu) { + return pmFPAReadHeader(chip->parent, fits); + } + if (!pmHDUReadHeader(chip->hdu, fits)) { + psError(PS_ERR_IO, false, "Unable to read header for cell.\n"); + return false; + } + + if (!pmConceptsReadChip(chip, PM_CONCEPT_SOURCE_HEADER, true, true, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts for chip.\n"); + return false; + } + + return true; +} + + +bool pmFPAReadHeader(pmFPA *fpa, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + if (!fpa->hdu) { + return false; + } + if (!pmHDUReadHeader(fpa->hdu, fits)) { + psError(PS_ERR_IO, false, "Unable to read header for cell.\n"); + return false; + } + + if (!pmConceptsReadFPA(fpa, PM_CONCEPT_SOURCE_HEADER, true, NULL)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read concepts for FPA.\n"); + return false; + } + + return true; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPAHeader.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAHeader.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAHeader.h (revision 12167) @@ -0,0 +1,41 @@ +/* @file pmFPAHeader.h + * @brief Functions read FITS headers for FPA components + * + * @author Paul Price, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_HEADER_H +#define PM_FPA_HEADER_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// Read the FITS header (and ingest concepts) for an FPA, if it exists at this level +/// +/// Returns false if there was a problem. Returns true if it successfully read the header, or if the header +/// was already there. No iteration to lower levels is performed. +bool pmFPAReadHeader(pmFPA *fpa, ///< FPA for which to read header + psFits *fits ///< FITS file handle + ); + +/// Read the FITS header (and ingest concepts) for a chip, if it exists at this level +/// +/// Returns false if there was a problem. Returns true if it successfully read the header, or if the header +/// was already there. No iteration to lower levels is performed. +bool pmChipReadHeader(pmChip *chip, ///< Chip for which to read header + psFits *fits ///< FITS file handle + ); + +/// Read the FITS header (and ingest concepts) for a cell, if it exists at this level +/// +/// Returns false if there was a problem. Returns true if it successfully read the header, or if the header +/// was already there. No iteration to lower levels is performed. +bool pmCellReadHeader(pmCell *cell, ///< Cell for which to read header + psFits *fits ///< FITS file handle + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPALevel.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPALevel.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPALevel.c (revision 12167) @@ -0,0 +1,58 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmFPALevel.h" + +static const char *NameNONE = "NONE"; ///< Name for PM_FPA_LEVEL_NONE +static const char *NameFPA = "FPA"; ///< Name for PM_FPA_LEVEL_FPA +static const char *NameCHIP = "CHIP"; ///< Name for PM_FPA_LEVEL_CHIP +static const char *NameCELL = "CELL"; ///< Name for PM_FPA_LEVEL_CELL +static const char *NameREADOUT = "READOUT"; ///< Name for PM_FPA_LEVEL_READOUT + +const char *pmFPALevelToName(pmFPALevel level) +{ + + switch (level) { + case PM_FPA_LEVEL_NONE: + return NameNONE; + case PM_FPA_LEVEL_FPA: + return NameFPA; + case PM_FPA_LEVEL_CHIP: + return NameCHIP; + case PM_FPA_LEVEL_CELL: + return NameCELL; + case PM_FPA_LEVEL_READOUT: + return NameREADOUT; + default: + psAbort("You can't get here; level = %d", level); + } + return NULL; +} + +pmFPALevel pmFPALevelFromName(const char *name) +{ + pmFPALevel val; + + if (name == NULL) { + val = PM_FPA_LEVEL_NONE; + } else if (!strcasecmp(name, "FPA")) { + val = PM_FPA_LEVEL_FPA; + } else if (!strcasecmp(name, "CHIP")) { + val = PM_FPA_LEVEL_CHIP; + } else if (!strcasecmp(name, "CELL")) { + val = PM_FPA_LEVEL_CELL; + } else if (!strcasecmp(name, "READOUT")) { + val = PM_FPA_LEVEL_READOUT; + } else { + val = PM_FPA_LEVEL_NONE; + } + + return val; +} + + Index: /branches/rel-1-1/psModules/src/camera/pmFPALevel.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPALevel.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPALevel.h (revision 12167) @@ -0,0 +1,35 @@ +/* @file pmFPALevel.h + * @brief Defines enum and string representations for the FPA levels + * + * @author Eugene Magnier, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_LEVEL_H +#define PM_FPA_LEVEL_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// Specify the level of the FPA hierarchy +typedef enum { + PM_FPA_LEVEL_NONE, ///< No particular level specified + PM_FPA_LEVEL_FPA, ///< Level corresponds to an FPA + PM_FPA_LEVEL_CHIP, ///< Level corresponds to a Chip + PM_FPA_LEVEL_CELL, ///< Level corresponds to a Cell + PM_FPA_LEVEL_READOUT ///< Level corresponds to a Readout +} pmFPALevel; + + +/// Return the string representation of the FPA level +const char *pmFPALevelToName(pmFPALevel level ///< Level enum + ); + +/// Return the enum representation of the FPA level +pmFPALevel pmFPALevelFromName(const char *name ///< Level name + ); +/// @} +#endif // #ifndef PM_FPA_LEVEL_H Index: /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.c (revision 12167) @@ -0,0 +1,309 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmHDUGenerate.h" +#include "pmFPAMaskWeight.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static (private) functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Create the parent mask images that reside in the HDU +static void createParentMasks(pmHDU *hdu // The HDU for which to create + ) +{ + assert(hdu); + assert(hdu->images); + + // Generate the parent mask images + psArray *images = hdu->images; // Array of images + psArray *masks = hdu->masks; // Array of masks + if (!masks) { + masks = psArrayAlloc(images->n); + hdu->masks = masks; + } + + for (long i = 0; i < images->n; i++) { + psImage *image = images->data[i]; // The image for this readout + if (!image || masks->data[i]) { + continue; + } + masks->data[i] = psImageAlloc(image->numCols, image->numRows, PS_TYPE_U8); + psImageInit(masks->data[i], 0); + } + + return; +} + +// Create the parent weight images that reside in the HDU +static void createParentWeights(pmHDU *hdu // The HDU for which to create + ) +{ + assert(hdu); + assert(hdu->images); + + // Generate the parent mask images + psArray *images = hdu->images; // Array of images + psArray *weights = hdu->weights; // Array of weight images + if (!weights) { + weights = psArrayAlloc(images->n); + hdu->weights = weights; + } + + for (long i = 0; i < images->n; i++) { + psImage *image = images->data[i]; // The image for this readout + if (!image || weights->data[i]) { + continue; + } + weights->data[i] = psImageAlloc(image->numCols, image->numRows, PS_TYPE_F32); + } + + return; +} + +// Identify a readout within the HDU, on the basis of the image pointer. +// This is a little dirty, but hopefully should work.... +static long identifyReadout(pmHDU *hdu, // The HDU containing the readouts + pmReadout *readout // The readout to be identified + ) +{ + assert(hdu); + assert(readout); + + long index = -1; // Index of the readout + for (long i = 0; i < hdu->images->n && index == -1; i++) { + if (hdu->images->data[i] == readout->image->parent) { + index = i; + } + } + + return index; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmReadoutSetMask(pmReadout *readout) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_IMAGE_NON_NULL(readout->image, false); + + pmCell *cell = readout->parent; // The parent cell + bool mdok = true; // Status of MD lookup + + // Get the "concepts" of interest + float saturation = psMetadataLookupF32(&mdok, cell->concepts, "CELL.SATURATION"); // Saturation level + if (!mdok || isnan(saturation)) { + psError(PS_ERR_IO, true, "CELL.SATURATION is not set --- unable to set mask.\n"); + return false; + } + float bad = psMetadataLookupF32(&mdok, cell->concepts, "CELL.BAD"); // Bad level + if (!mdok || isnan(bad)) { + psError(PS_ERR_IO, true, "CELL.BAD is not set --- unable to set mask.\n"); + return false; + } + psTrace("psModules.camera", 5, "Saturation: %f, bad: %f\n", saturation, bad); + + + // Set up the mask + psImage *image = readout->image; // The image pixels + if (!readout->mask) { + // Generate a (throwaway) mask image, if required + readout->mask = psImageAlloc(image->numCols, image->numRows, PS_TYPE_U8); + psImageInit(readout->mask, 0); + } + psImage *mask = readout->mask; // The mask pixels + + // Dereference pointers for speed + psF32 **imageData = image->data.F32;// The image + psU8 **maskData = mask->data.U8; // The mask + + for (int i = 0; i < image->numRows; i++) { + for (int j = 0; j < image->numCols; j++) { + if (imageData[i][j] >= saturation) { + maskData[i][j] |= PM_MASK_SAT; + } + if (imageData[i][j] <= bad) { + maskData[i][j] |= PM_MASK_BAD; + } + } + } + + return true; +} + +// XXX this function creates the mask pixels, or uses the existing mask +// pixels. currently, it will set mask bits if (value <= BAD) or (value >= SATURATION) +// should we optionally ignore these tests? +bool pmReadoutGenerateMask(pmReadout *readout) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + + pmCell *cell = readout->parent; // The parent cell + bool mdok = true; // Status of MD lookup + + // Create the mask image if required + if (!readout->mask) { + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || psRegionIsNaN(*trimsec)) { + psError(PS_ERR_IO, true, "CELL.TRIMSEC is not set --- unable to set mask.\n"); + return false; + } + + pmHDU *hdu = pmHDUFromCell(cell); // The HDU containing the cell's pixels + PS_ASSERT_PTR_NON_NULL(hdu, false); + if (!hdu->images && !pmHDUGenerateForCell(cell)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate HDU for cell.\n"); + return false; + } + + createParentMasks(hdu); + + // Need to identify which readout we're working with.... + long index = identifyReadout(hdu, readout); // Index of the readout + if (index == -1) { + psError(PS_ERR_UNKNOWN, true, "Unable to identify readout image in HDU.\n"); + return false; + } + + psImage *mask = psImageSubset(hdu->masks->data[index], *trimsec); // The mask pixels + if (!mask) { + psString trimsecString = psRegionToString(*trimsec); + psError(PS_ERR_UNKNOWN, false, "Unable to set mask from HDU with trimsec: %s.\n", trimsecString); + psFree(trimsecString); + return false; + } + psImageInit(mask, 0); + assert (readout->mask == NULL); // or else this is a memory leak. + readout->mask = mask; + } + + return pmReadoutSetMask(readout); +} + +bool pmReadoutSetWeight(pmReadout *readout, bool poisson) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + + pmCell *cell = readout->parent; // The parent cell + bool mdok = true; // Status of MD lookup + + // Get the "concepts" of interest + float gain = psMetadataLookupF32(&mdok, cell->concepts, "CELL.GAIN"); // Cell gain + if (!mdok || isnan(gain)) { + psError(PS_ERR_IO, true, "CELL.GAIN is not set --- unable to set weight.\n"); + return false; + } + float readnoise = psMetadataLookupF32(&mdok, cell->concepts, "CELL.READNOISE"); // Cell read noise + if (!mdok || isnan(readnoise)) { + psError(PS_ERR_IO, true, "CELL.READNOISE is not set --- unable to set weight.\n"); + return false; + } + + if (poisson) { + // Set weight image to the variance in ADU = f/g + rn^2 + psImage *image = readout->image; // The image pixels + readout->weight = (psImage*)psBinaryOp(readout->weight, image, "/", psScalarAlloc(gain, PS_TYPE_F32)); + + // a negative weight is non-sensical. if the image value drops below 1, the weight must be 1. + readout->weight = (psImage*)psUnaryOp(readout->weight, readout->weight, "abs"); + readout->weight = (psImage*)psBinaryOp(readout->weight, readout->weight, "max", + psScalarAlloc(1, PS_TYPE_F32)); + } else { + // Just use the read noise + if (!readout->weight) { + readout->weight = psImageAlloc(readout->image->numCols, readout->image->numRows, PS_TYPE_F32); + } + psImageInit(readout->weight, 0.0); + } + + readout->weight = (psImage*)psBinaryOp(readout->weight, readout->weight, "+", + psScalarAlloc(readnoise*readnoise/gain/gain, PS_TYPE_F32)); + + return true; +} + +// this function creates the weight pixels, or uses the existing weight pixels. it will set +// the noise pixel values only if the weight image is not supplied +bool pmReadoutGenerateWeight(pmReadout *readout, bool poisson) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + + pmCell *cell = readout->parent; // The parent cell + bool mdok = true; // Status of MD lookup + + // Create the weight image if required + if (readout->weight) + return true; + + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || psRegionIsNaN(*trimsec)) { + psError(PS_ERR_IO, true, "CELL.TRIMSEC is not set --- unable to set weight.\n"); + return false; + } + + pmHDU *hdu = pmHDUFromCell(cell); // The HDU containing the cell's pixels + PS_ASSERT_PTR_NON_NULL(hdu, false); + if (!hdu->images && !pmHDUGenerateForCell(cell)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate HDU for cell.\n"); + return false; + } + + createParentWeights(hdu); + + // Need to identify which readout we're working with.... + long index = identifyReadout(hdu, readout); // Index of the readout + if (index == -1) { + psError(PS_ERR_UNKNOWN, true, "Unable to identify readout image in HDU.\n"); + return false; + } + + psImage *weight = psImageSubset(hdu->weights->data[index], *trimsec); // The weight pixels + if (!weight) { + psString trimsecString = psRegionToString(*trimsec); + psError(PS_ERR_UNKNOWN, false, "Unable to set weight from HDU with trimsec: %s.\n", + trimsecString); + psFree(trimsecString); + return false; + } + psImageInit(weight, 0); + readout->weight = weight; + + return pmReadoutSetWeight(readout, poisson); +} + +bool pmReadoutGenerateMaskWeight(pmReadout *readout, bool poisson) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + + bool success = true; // Was everything successful? + + success &= pmReadoutGenerateMask(readout); + success &= pmReadoutGenerateWeight(readout, poisson); + + return success; +} + +bool pmCellGenerateMaskWeight(pmCell *cell, bool poisson) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + + bool success = true; // Was everything successful? + psArray *readouts = cell->readouts; // Array of readouts + for (int i = 0; i < readouts->n; i++) { + pmReadout *readout = readouts->data[i]; // The readout + pmReadoutGenerateMaskWeight(readout, poisson); + } + + return success; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAMaskWeight.h (revision 12167) @@ -0,0 +1,83 @@ +/* @file pmFPAHeader.h + * @brief Functions read FITS headers for FPA components + * + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_MASK_WEIGHT_H +#define PM_FPA_MASK_WEIGHT_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" + +/// Pixel mask values +typedef enum { + PM_MASK_CLEAR = 0x00, ///< The pixel is not masked + PM_MASK_TRAP = 0x01, ///< The pixel is a charge trap. + PM_MASK_BADCOL = 0x02, ///< The pixel is a bad column. + PM_MASK_SAT = 0x04, ///< The pixel is saturated. + PM_MASK_BAD = 0x08, ///< The pixel is low + PM_MASK_FLAT = 0x10, ///< The pixel is non-positive in the flat-field. + PM_MASK_MARK = 0x20, ///< The pixel is marked as temporarily ignored + PM_MASK_EXT1 = 0x40, ///< This mask value is not used + PM_MASK_EXT2 = 0x80, ///< This mask value is not used +} pmMaskValue; + + +/// Set a temporary readout mask using CELL.SATURATION and CELL.BAD +/// +/// Identifies pixels that are saturated (>= CELL.SATURATION) or bad (<= CELL.BAD). The mask that is produced +/// within the readout is temporary --- it is not added to the HDU. This is intended for when the user is +/// iterating using pmReadoutReadNext, in which case the HDU can't be generated. +bool pmReadoutSetMask(pmReadout *readout ///< Readout for which to set mask + ); + + +/// Set a temporary readout weight map using CELL.GAIN and CELL.READNOISE +/// +/// Calculates weights (actually variances) for each pixel using photon statistics and the cell gain +/// (CELL.GAIN) and read noise (CELL.READNOISE). The weight map that is produced within the readout is +/// temporary --- it is not added to the HDU. This is intended for when the user is iterating using +/// pmReadoutReadNext, in which case the HDU can't be generated. +bool pmReadoutSetWeight(pmReadout *readout, ///< Readout for which to set weight + bool poisson ///< Use poisson weights (in addition to read noise)? + ); + +/// Generate a readout mask (suitable for output) using CELL.SATURATION and CELL.BAD +/// +/// Identifies pixels that are saturated (>= CELL.SATURATION) or bad (<= CELL.BAD). The mask that is produced +/// is suitable for output (complete with HDU entry). This is intended for most operations. +bool pmReadoutGenerateMask(pmReadout *readout ///< Readout for which to generate mask + ); + +/// Generate a weight map (suitable for output) using CELL.GAIN and CELL.READNOISE +/// +/// Calculates weights (actually variances) for each pixel using photon statistics and the cell gain +/// (CELL.GAIN) and read noise (CELL.READNOISE). The weight map that is produced within the readout is +/// suitable for output (complete with HDU entry). This is intended for most operations. +bool pmReadoutGenerateWeight(pmReadout *readout, ///< Readout for which to generate weight + bool poisson ///< Use poisson weights (in addition to read noise)? + ); + +/// Generate mask and weight map for a readout +/// +/// Calls pmReadoutGenerateMask and pmReadoutGenerateWeight for the readout +bool pmReadoutGenerateMaskWeight(pmReadout *readout, ///< Readout for which to generate mask and weights + bool poisson ///< Use poisson weights (in addition to read noise)? + ); + +/// Generate mask and weight maps for all readouts within a cell +/// +/// Calls pmReadoutGenerateMaskWeight for each readout within the cell. +bool pmCellGenerateMaskWeight(pmCell *cell, ///< Cell for which to generate mask and weights + bool poisson ///< Use poisson weights (in addition to read noise)? + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.c (revision 12167) @@ -0,0 +1,1230 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmFPA.h" +#include "pmFPAFlags.h" +#include "pmHDU.h" +#include "pmConceptsAverage.h" +#include "pmHDUUtils.h" +#include "pmFPAMosaic.h" +#include "pmConfig.h" + +#define CELL_LIST_BUFFER 50 // Buffer size for cell lists + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static (private) functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Do two regions overlap? +#define REGIONS_OVERLAP(region1, region2) \ +((region1->x0 > region2->x0 && region1->x0 < region2->x1) || \ + (region1->x1 > region2->x0 && region1->x1 < region2->x1) || \ + (region1->y0 > region2->y0 && region1->y0 < region2->y1) || \ + (region1->y1 > region2->y0 && region1->y1 < region2->y1)) + +// Compare a value with a maximum and minimum +#define COMPARE(value,min,max) \ +if ((value) < (min)) { \ + (min) = (value); \ +} \ +if ((value) > (max)) { \ + (max) = (value); \ +} + +// Update a concept to the assumed value +#define FIX_CONCEPT(SOURCE, NAME, TYPE, VALUE) \ +psMetadataItem *item = psMetadataLookup(SOURCE, NAME); \ +item->data.TYPE = VALUE; + +// Get the bounds for an chip's pixels on the HDU +static bool chipBounds(psRegion *bounds, // The bounds for the chip + const pmChip *chip // The chip to examine for contiguity + ) +{ + assert(chip); + + psArray *cells = chip->cells; // The array of cells + bool mdok = true; // Status of MD lookup + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || !trimsec || psRegionIsNaN(*trimsec)) { + psError(PS_ERR_UNKNOWN, true, "CELL.TRIMSEC hasn't been set for cell %d.\n", i); + return false; + } + + if (trimsec->x0 < bounds->x0) { + bounds->x0 = trimsec->x0; + } + if (trimsec->x1 > bounds->x1) { + bounds->x1 = trimsec->x1; + } + if (trimsec->y0 < bounds->y0) { + bounds->y0 = trimsec->y0; + } + if (trimsec->y1 > bounds->y1) { + bounds->y1 = trimsec->y1; + } + } + + return true; +} + +// Make sure the TRIMSEC doesn't overlap with the established image bounds +static bool chipContiguousTrimsec(psRegion *bounds, // The bounds of the image, altered if primary==true + const pmChip *chip // The chip to examine for contiguity + ) +{ + assert(bounds); + assert(chip); + + psArray *cells = chip->cells; // The array of cells + bool mdok = true; // Status of MD lookup + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || !trimsec || psRegionIsNaN(*trimsec)) { + psError(PS_ERR_UNKNOWN, true, "CELL.TRIMSEC hasn't been set for cell %d.\n", i); + return false; + } + + if (REGIONS_OVERLAP(trimsec, bounds)) { + return false; + } + } + + return true; +} + +// Make sure the BIASSEC doesn't overlap with the established image bounds +static bool chipContiguousBiassec(psRegion *bounds, // The bounds of the image, altered if primary==true + const pmChip *chip // The chip to examine for contiguity + ) +{ + assert(bounds); + assert(chip); + + // Check that the biases don't get in the way + psArray *cells = chip->cells; // The array of cells + bool mdok = true; // Status of MD lookup + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + psList *biassecs = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.BIASSEC"); // Bias sections + if (!mdok || !biassecs) { + psError(PS_ERR_UNKNOWN, true, "CELL.BIASSEC hasn't been set for cell %d.\n", i); + return false; + } + if (biassecs->n == 0) { + // No point allocating an iterator if there's nothing there to iterate on + continue; + } + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, false); // Iterator + psRegion *biassec = NULL; // Bias section from iteration + while ((biassec = psListGetAndIncrement(biassecsIter))) { + if (psRegionIsNaN(*biassec)) { + continue; + } + if (REGIONS_OVERLAP(biassec, bounds)) { + psFree(biassecsIter); + return false; + } + } + psFree(biassecsIter); + } + + // If we've gotten this far, everything is fine. + return true; +} + +// Are the pixels for the FPA contiguous on the HDU? +// Work this out by examining all the CELL.TRIMSEC and CELL.BIASSEC regions for the component cells +static bool fpaContiguous(psRegion *bounds, // The bounds of the image, returned + const pmFPA *fpa // The FPA to examine for contiguity + ) +{ + assert(bounds); + assert(fpa); + + *bounds = psRegionSet(INFINITY, 0, INFINITY, 0); + + // Get the size of the pixels on the HDU + psArray *chips = fpa->chips; // The array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (!chipBounds(bounds, chip)) { + return false; + } + } + + // Make sure the bias regions don't get in the way of the HDU + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (!chipContiguousBiassec(bounds, chip)) { + return false; + } + } + + // If we got through it all, they must all be contiguous + return true; +} + + + +// Check a cell for niceness in the parity and binning +static bool niceCellParityBinning(int *xBin, int *yBin, // Binning for cell, to be returned + const pmCell *cell // Cell to check for niceness + ) +{ + assert(xBin); + assert(yBin); + assert(cell); + + // A "nice" cell must have only a single readout + if (cell->readouts->n != 1) { + return false; + } + + // A "nice" cell must have parity == 1 + bool mdok = true; // Status of MD lookup + int xParity = psMetadataLookupS32(&mdok, cell->concepts, "CELL.XPARITY"); // Parity in x + if (!mdok || xParity == 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.XPARITY hasn't been set for cell.\n"); + return false; + } + if (xParity != 1) { + return false; + } + int yParity = psMetadataLookupS32(&mdok, cell->concepts, "CELL.YPARITY"); // Parity in y + if (!mdok || yParity == 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.YPARITY hasn't been set for cell.\n"); + return false; + } + if (yParity != 1) { + return false; + } + + // A "nice" cell must have consistent binning + int xBinCell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.XBIN"); // Binning in x + if (!mdok || xBin <= 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.XBIN hasn't been set for cell.\n"); + return false; + } + int yBinCell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.YBIN"); // Binning in y + if (!mdok || yBin <= 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.YBIN hasn't been set for cell.\n"); + return false; + } + if (*xBin == 0 || *yBin == 0) { + *xBin = xBinCell; + *yBin = yBinCell; + } else if (xBinCell != *xBin || yBinCell != *yBin) { + return false; + } + + return true; +} + + +// Check a cell for niceness in the boundaries +static bool niceCellBounds(const pmCell *cell, // Cell to check for niceness + const psRegion *imageBounds // Bounds of the image on the HDU + ) +{ + // A "nice" cell must have the (0,0) pixel at CELL.X0,CELL.Y0 + bool mdok = true; // Status of MD lookup + int x0 = psMetadataLookupS32(&mdok, cell->concepts, "CELL.X0"); // Position of (0,0) on chip + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CELL.X0 hasn't been set for cell.\n"); + return false; + } + int y0 = psMetadataLookupS32(&mdok, cell->concepts, "CELL.Y0"); // Position of (0,0) on chip + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CELL.Y0 hasn't been set for cell.\n"); + return false; + } + pmReadout *readout = cell->readouts->data[0]; // A representative readout + if (!readout) { + return false; // Nothing here + } + if (x0 != readout->col0 + readout->image->col0 - (int)imageBounds->x0 || + y0 != readout->row0 + readout->image->row0 - (int)imageBounds->y0) { + psTrace("psModules.camera", 5, "CELL.X0,Y0 don't match: %d,%d vs %d,%d\n", x0, y0, + readout->col0 + readout->image->col0 - (int)imageBounds->x0, + readout->row0 + readout->image->row0 - (int)imageBounds->y0); + return false; + } + + return true; +} + + +// Is the chip "nice"? If so, return the region containing the chip pixels +static psRegion *niceChip(int *xBinChip, int *yBinChip, // Binning for chip, to be returned + const pmChip *chip // Chip to examine for "niceness". + ) +{ + assert(xBinChip); + assert(yBinChip); + assert(chip); + + // Check that we've got the HDU in the chip or the FPA + if ((!chip->hdu || !chip->hdu->images) && (!chip->parent->hdu || !chip->parent->hdu->images)) { + return NULL; + } + + // Check parity and binning for component cells + *xBinChip = 0; + *yBinChip = 0; + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; // The cell of interest + if (!niceCellParityBinning(xBinChip, yBinChip, cell)) { + return NULL; + } + } + + // Now check that the pixels are all contiguous + psRegion *imageBounds = psRegionAlloc(INFINITY, 0, INFINITY, 0); // Bound of image on HDU + if (!chipBounds(imageBounds, chip) || !chipContiguousBiassec(imageBounds, chip)) { + psTrace("psModules.camera", 5, "Image isn't contiguous.\n"); + psFree(imageBounds); + return NULL; + } + + psString region = psRegionToString(*imageBounds); + psTrace("psModules.camera", 7, "Image bounds: %s\n", region); + psFree(region); + + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; // The cell of interest + if (!niceCellBounds(cell, imageBounds)) { + psFree(imageBounds); + return NULL; + } + } + + // Need to check all the other chips if the HDU is in the FPA + pmFPA *fpa = chip->parent; // The parent FPA + if (fpa->hdu && fpa->hdu->images) { + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *testChip = chips->data[i]; // The chip of interest + if (testChip == chip) { + // Already done this one + continue; + } + if (!chipContiguousTrimsec(imageBounds, testChip) || + !chipContiguousBiassec(imageBounds, testChip)) { + psTrace("psModules.camera", 5, "Image isn't contiguous.\n"); + psFree(imageBounds); + return NULL; + } + } + } + + return imageBounds; +} + +// Is the FPA "nice"? If so, return the region containing the FPA pixels +static psRegion *niceFPA(int *xBinFPA, int *yBinFPA, // Binning for FPA, to be returned + const pmFPA *fpa // FPA to examine for "niceness". + ) +{ + assert(xBinFPA); + assert(yBinFPA); + assert(fpa); + + // Check that we've got the HDU in the chip or the FPA + if (!fpa->hdu || !fpa->hdu->images) { + return NULL; + } + + // Check parity and binning for component cells + *xBinFPA = 0; + *yBinFPA = 0; + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; // The chip of interest + for (int j = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[j]; // The cell of interest + if (!niceCellParityBinning(xBinFPA, yBinFPA, cell)) { + return NULL; + } + } + } + + // Now check that the pixels are all contiguous + psRegion *imageBounds = psRegionAlloc(0, 0, 0, 0); // Bound of image on HDU + if (!fpaContiguous(imageBounds, fpa)) { + psTrace("psModules.camera", 5, "Image isn't contiguous.\n"); + psFree(imageBounds); + return NULL; + } + + psString region = psRegionToString(*imageBounds); + psTrace("psModules.camera", 7, "Image bounds: %s\n", region); + psFree(region); + + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; // The chip of interest + for (int j = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[j]; // The cell of interest + if (!niceCellBounds(cell, imageBounds)) { + psFree(imageBounds); + return NULL; + } + } + } + + return imageBounds; +} + +// Mosaic multiple images, with flips, binning and offsets +static psImage *imageMosaic(const psArray *source, // Images to splice in + const psVector *xFlip, const psVector *yFlip, // Need to flip x and y? + const psVector *xBinSource, // Binning in x of source images + const psVector *yBinSource, // Binning in y of source images + int xBinTarget, int yBinTarget, // Binning in x and y of target images + const psVector *x0, const psVector *y0 // Offsets for source images on target + ) +{ + assert(source); + assert(xFlip && xFlip->type.type == PS_TYPE_U8); + assert(yFlip && yFlip->type.type == PS_TYPE_U8); + assert(xBinSource && xBinSource->type.type == PS_TYPE_S32); + assert(yBinSource && yBinSource->type.type == PS_TYPE_S32); + assert(x0 && x0->type.type == PS_TYPE_S32); + assert(y0 && y0->type.type == PS_TYPE_S32); + assert(xFlip->n == source->n); + assert(yFlip->n == source->n); + assert(xBinSource->n == source->n); + assert(yBinSource->n == source->n); + assert(x0->n == source->n); + assert(y0->n == source->n); + + if (source->n == 0) { + return NULL; + } + + // Get the maximum extent of the mosaic image + int xMin = INT_MAX; + int xMax = - INT_MAX; + int yMin = INT_MAX; + int yMax = - INT_MAX; + psElemType type = 0; + int numImages = 0; // Number of images + psTrace("psModules.camera", 3, "Mosaicking %ld cells.\n", source->n); + for (int i = 0; i < source->n; i++) { + psImage *image = source->data[i]; // The image of interest + if (!image) { + continue; + } + numImages++; + + // Only implemented for F32 and U8 images so far. + assert(image->type.type == PS_TYPE_F32 || image->type.type == PS_TYPE_U8); + // All input types must be the same + if (type == 0) { + type = image->type.type; + } + assert(type == image->type.type); + + // Size of cell in x and y + int xParity = xFlip->data.U8[i] ? -1 : 1; + int yParity = yFlip->data.U8[i] ? -1 : 1; + psTrace("psModules.camera", 5, "Extent of cell %d: %d -> %d , %d -> %d\n", i, x0->data.S32[i], + x0->data.S32[i] + xParity * xBinSource->data.S32[i] * image->numCols, y0->data.S32[i], + y0->data.S32[i] + yParity * yBinSource->data.S32[i] * image->numRows); + + COMPARE(x0->data.S32[i], xMin, xMax); + COMPARE(y0->data.S32[i], yMin, yMax); + // Subtract the parity to get the inclusive limit (not exclusive) + COMPARE(x0->data.S32[i] + xParity * xBinSource->data.S32[i] * image->numCols - xParity, xMin, xMax); + COMPARE(y0->data.S32[i] + yParity * yBinSource->data.S32[i] * image->numRows - yParity, yMin, yMax); + } + if (numImages == 0) { + return NULL; + } + + // Set up the image + // Since both upper and lower values are inclusive, we need to add one to the size + float xSize = (float)(xMax - xMin + 1) / (float)xBinTarget; + if (xSize - (int)xSize > 0) { + xSize += 1; + } + float ySize = (float)(yMax - yMin + 1) / (float)yBinTarget; + if (ySize - (int)ySize > 0) { + ySize += 1; + } + + psTrace("psModules.camera", 3, "Spliced image will be %dx%d\n", (int)xSize, (int)ySize); + psImage *mosaic = psImageAlloc((int)xSize, (int)ySize, type); // The mosaic image + psImageInit(mosaic, 0); + + // Next pass through the images to do the mosaicking + for (int i = 0; i < source->n; i++) { + psImage *image = source->data[i]; // The image of interest + if (!image) { + continue; + } + int xParity = xFlip->data.U8[i] ? -1 : 1; // Parity difference, in x + int yParity = yFlip->data.U8[i] ? -1 : 1; // Parity difference, in y + int xTargetBase = (x0->data.S32[i] - xMin) / xBinTarget; // The base x position in the target frame + int yTargetBase = (y0->data.S32[i] - yMin) / yBinTarget; // The base y position in the target frame + if (xBinSource->data.S32[i] == xBinTarget && yBinSource->data.S32[i] == yBinTarget && + xFlip->data.U8[i] == 0 && yFlip->data.U8[i] == 0) { + // Let someone else do the hard work + psImageOverlaySection(mosaic, image, xTargetBase, yTargetBase, "+"); + } else if (xBinSource->data.S32[i] == xBinTarget && yBinSource->data.S32[i] == yBinTarget) { + // There's a difference with the parities, but we don't have to worry about binning + + #define COPY_WITH_PARITY_DIFFERENCE(TYPE) \ + case PS_TYPE_##TYPE: { \ + for (int y = 0; y < image->numRows; y++) { \ + int yTarget = yTargetBase + yParity * y; \ + for (int x = 0; x < image->numCols; x++) { \ + int xTarget = xTargetBase + xParity * x; \ + mosaic->data.TYPE[yTarget][xTarget] += image->data.TYPE[y][x]; \ + } \ + } \ + } \ + break; + + switch (type) { + COPY_WITH_PARITY_DIFFERENCE(F32); + COPY_WITH_PARITY_DIFFERENCE(U8); + default: + psAbort("Should never get here.\n"); + } + + } else { + // We have to do all of the hard work ourself + + // In case the original image is binned but the mosaic is not, we need to fill in the + // values in the mosaic. + #define FILL_IN(TYPE) \ + case PS_TYPE_##TYPE: \ + for (int y = 0; y < image->numRows; y++) { \ + float yTargetBinBase = yTargetBase + yParity * yBinSource->data.S32[i] * y / yBinTarget; \ + for (int x = 0; x < image->numCols; x++) { \ + float xTargetBinBase = xTargetBase + xParity * xBinSource->data.S32[i] * x / xBinTarget; \ + for (int j = 0; j < yBinSource->data.S32[i]; j++) { \ + int yTarget = (int)(yTargetBinBase + yParity * (float)j / (float)yBinTarget); \ + for (int k = 0; k < xBinSource->data.S32[i]; k++) { \ + int xTarget = (int)(xTargetBinBase + xParity * (float)k / (float)xBinTarget); \ + mosaic->data.TYPE[yTarget][xTarget] += image->data.TYPE[y][x]; \ + } \ + } \ + } \ + } \ + break; + + switch (type) { + FILL_IN(F32); + FILL_IN(U8); + default: + psAbort("Should never get here.\n"); + } + + } // Various difficulty levels + } // Iterating over images + + return mosaic; +} + + +// Add a cell and its various properties to the arrays +static bool addCell(psArray *images, // Array of images + psArray *masks, // Array of masks + psArray *weights, // Array of weights + psVector *x0, // Array of X0 + psVector *y0, // Array of Y0 + psVector *xBin, // Array of XBIN + psVector *yBin, // Array of YBIN + psVector *xFlip, // Array indicating whether x axis should be flipped + psVector *yFlip, // Array indicating whether y axis should be flipped + const pmCell *cell, // Cell to add + int *xBinMin, // The minimum x binning, returned + int *yBinMin, // The minimum y binning, returned + bool chipStuff, // Worry about chip stuff as well? + int x0Target, int y0Target, // Target x0 and y0 offsets + int xParityTarget, int yParityTarget // Target parities + ) +{ + if (!cell) { + return false; + } + + // Expand the arrays and vectors to handle new data + long index = images->n; // The index to use + if (images->n == images->nalloc) { + images = psArrayRealloc(images, index + CELL_LIST_BUFFER); + masks = psArrayRealloc(masks, index + CELL_LIST_BUFFER); + weights = psArrayRealloc(weights, index + CELL_LIST_BUFFER); + x0 = psVectorRealloc(x0, index+ CELL_LIST_BUFFER); + y0 = psVectorRealloc(y0, index+ CELL_LIST_BUFFER); + xBin = psVectorRealloc(xBin, index+ CELL_LIST_BUFFER); + yBin = psVectorRealloc(yBin, index+ CELL_LIST_BUFFER); + xFlip = psVectorRealloc(xFlip, index+ CELL_LIST_BUFFER); + yFlip = psVectorRealloc(yFlip, index+ CELL_LIST_BUFFER); + } + + images->n = index + 1; + masks->n = index + 1; + weights->n = index + 1; + x0->n = index + 1; + y0->n = index + 1; + xBin->n = index + 1; + yBin->n = index + 1; + xFlip->n = index + 1; + yFlip->n = index + 1; + + bool mdok = true; // Status of MD lookup + bool good = true; // Is everything good? + + // Offset of the cell on the chip + int x0Cell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.X0"); + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CELL.X0 for cell is not set.\n"); + good = false; + } + int y0Cell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.Y0"); + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CELL.Y0 for cell is not set.\n"); + good = false; + } + psTrace("psModules.camera", 5, "Cell %ld: x0=%d y0=%d\n", index, x0Cell, y0Cell); + + // Offset of the chip on the FPA + int x0Chip = 0, y0Chip = 0; + if (chipStuff) { + pmChip *chip = cell->parent; // The parent chip + if (!chip) { + psError(PS_ERR_UNKNOWN, true, "Cell has no parent chip --- can't find CHIP.X0 and CHIP.Y0\n"); + good = false; + } + x0Chip = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.X0"); + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CHIP.X0 for chip is not set.\n"); + good = false; + } + y0Chip = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.Y0"); + if (!mdok) { + psError(PS_ERR_UNKNOWN, true, "CHIP.Y0 for chip is not set.\n"); + good = false; + } + } + + // Binning + xBin->data.S32[index] = psMetadataLookupS32(&mdok, cell->concepts, "CELL.XBIN"); + if (!mdok || xBin->data.S32[index] == 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.XBIN for cell is not set.\n"); + good = false; + } else if (xBin->data.S32[index] < *xBinMin) { + *xBinMin = xBin->data.S32[index]; + } + yBin->data.S32[index] = psMetadataLookupS32(&mdok, cell->concepts, "CELL.YBIN"); + if (!mdok || yBin->data.S32[index] == 0) { + psError(PS_ERR_UNKNOWN, true, "CELL.YBIN for cell is not set.\n"); + good = false; + } else if (yBin->data.S32[index] < *yBinMin) { + *yBinMin = yBin->data.S32[index]; + } + + // Do we need to flip? + int xParityCell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.XPARITY"); + if (!mdok || (xParityCell != 1 && xParityCell != -1)) { + psError(PS_ERR_UNKNOWN, true, "CELL.XPARITY for cell is not set.\n"); + good = false; + } + int yParityCell = psMetadataLookupS32(&mdok, cell->concepts, "CELL.YPARITY"); + if (!mdok || (yParityCell != 1 && yParityCell != -1)) { + psError(PS_ERR_UNKNOWN, true, "CELL.YPARITY for cell is not set.\n"); + good = false; + } + + // Parity of the chip on the FPA + int xParityChip = 1, yParityChip = 1; + if (chipStuff) { + pmChip *chip = cell->parent; // The parent chip + xParityChip = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.XPARITY"); + if (!mdok || (xParityChip != 1 && xParityChip != -1)) { + psError(PS_ERR_UNKNOWN, true, "CHIP.XPARITY for chip is not set.\n"); + good = false; + } + yParityChip = psMetadataLookupS32(&mdok, chip->concepts, "CHIP.YPARITY"); + if (!mdok || (yParityChip != 1 && yParityChip != -1)) { + psError(PS_ERR_UNKNOWN, true, "CHIP.YPARITY for chip is not set.\n"); + good = false; + } + } + + // Set the flips on the basis of the parity + if (xParityCell * xParityChip == xParityTarget) { + xFlip->data.U8[index] = 0; + } else { + xFlip->data.U8[index] = 1; + } + if (yParityCell * yParityChip == yParityTarget) { + yFlip->data.U8[index] = 0; + } else { + yFlip->data.U8[index] = 1; + } + + x0->data.S32[index] = x0Chip + x0Cell - x0Target; + y0->data.S32[index] = y0Chip + y0Cell - y0Target; + + // Add the readout to the array of images to be mosaicked + psArray *readouts = cell->readouts; // The array of readouts + if (readouts->n > 1) { + psLogMsg(__func__, PS_LOG_WARN, "Cell contains more than one readout (%ld) --- only the first will " + "be mosaicked.\n", readouts->n); + } + pmReadout *readout = readouts->data[0]; // The only readout we'll bother with + + // The images to put into the mosaic + images->data[index] = psMemIncrRefCounter(readout->image); + weights->data[index] = psMemIncrRefCounter(readout->weight); + masks->data[index] = psMemIncrRefCounter(readout->mask); + + psTrace("psModules.camera", 9, "Added cell (%p) %ld: %d,%d; %d,%d, %d,%d.\n", cell, index, + x0->data.S32[index], y0->data.S32[index], xBin->data.S32[index], yBin->data.S32[index], + xFlip->data.U8[index], yFlip->data.U8[index]); + + return true; +} + + +// Mosaic together the cells in a chip +static bool chipMosaic(psImage **mosaicImage, // The mosaic image, to be returned + psImage **mosaicMask, // The mosaic mask, to be returned + psImage **mosaicWeights, // The mosaic weights, to be returned + int *xBinChip, int *yBinChip, // The binning in x and y, to be returned + const pmChip *chip, // Chip to mosaic + const pmCell *targetCell // Cell to which to mosaic + ) +{ + assert(mosaicImage); + assert(mosaicMask); + assert(mosaicWeights); + assert(xBinChip); + assert(yBinChip); + assert(chip); + assert(targetCell); + + psArray *images = psArrayAlloc(0); // Array of images that will be mosaicked + psArray *weights = psArrayAlloc(0); // Array of weight images to be mosaicked + psArray *masks = psArrayAlloc(0); // Array of mask images to be mosaicked + psVector *x0 = psVectorAlloc(0, PS_TYPE_S32); // Origin x coordinates + psVector *y0 = psVectorAlloc(0, PS_TYPE_S32); // Origin y coordinates + psVector *xBin = psVectorAlloc(0, PS_TYPE_S32); // Binning in x + psVector *yBin = psVectorAlloc(0, PS_TYPE_S32); // Binning in y + psVector *xFlip = psVectorAlloc(0, PS_TYPE_U8); // Flip in x? + psVector *yFlip = psVectorAlloc(0, PS_TYPE_U8); // Flip in y? + + // Get the target characteristics + bool mdok = true; // Status of MD lookup + int x0Target = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.X0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.X0 is not set for the target cell; assuming 0.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.X0", S32, 0); + } + int y0Target = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.Y0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.Y0 is not set for the target cell; assuming 0.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.Y0", S32, 0); + } + int xParityCellTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.XPARITY"); + if (!mdok || (xParityCellTarget != -1 && xParityCellTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.XPARITY is not set for the target cell; assuming 1.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.XPARITY", S32, 1); + xParityCellTarget = 1; + } + int yParityCellTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.YPARITY"); + if (!mdok || (yParityCellTarget != -1 && yParityCellTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.YPARITY is not set for the target cell; assuming 1.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.YPARITY", S32, 1); + yParityCellTarget = 1; + } + int xParityChipTarget = psMetadataLookupS32(&mdok, targetCell->parent->concepts, "CHIP.XPARITY"); + if (!mdok || (xParityChipTarget != -1 && xParityChipTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.XPARITY is not set for the target chip; assuming 1.\n"); + FIX_CONCEPT(targetCell->parent->concepts, "CHIP.XPARITY", S32, 1); + xParityChipTarget = 1; + } + int yParityChipTarget = psMetadataLookupS32(&mdok, targetCell->parent->concepts, "CHIP.YPARITY"); + if (!mdok || (yParityChipTarget != -1 && yParityChipTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.YPARITY is not set for the target chip; assuming 1.\n"); + FIX_CONCEPT(targetCell->parent->concepts, "CHIP.YPARITY", S32, 1); + yParityChipTarget = 1; + } + int xParityTarget = xParityChipTarget * xParityCellTarget; + int yParityTarget = yParityChipTarget * yParityCellTarget; + + // Binning for the mosaicked chip is the minimum binning allowed by the cells + *xBinChip = INT_MAX; + *yBinChip = INT_MAX; + + // Set up the required inputs + bool allGood = true; // Is everything good, well-behaved? + psArray *cells = chip->cells; // The array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // The cell of interest + if (!cell || !cell->data_exists) { + continue; + } + allGood |= addCell(images, masks, weights, x0, y0, xBin, yBin, xFlip, yFlip, + cell, xBinChip, yBinChip, false, x0Target, y0Target, + xParityTarget, yParityTarget); + } + + // Check to see if the target has a smaller binning in mind + int xBinTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.XBIN"); + if (!mdok || xBinTarget == 0) { + // CELL.XBIN is not set for the target cell --- assume it's the same as the source + FIX_CONCEPT(targetCell->concepts, "CELL.XBIN", S32, *xBinChip); + } else { + *xBinChip = xBinTarget; + } + int yBinTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.YBIN"); + if (!mdok || yBinTarget == 0) { + // CELL.YBIN is not set for the target cell --- assume it's the same as the source + FIX_CONCEPT(targetCell->concepts, "CELL.YBIN", S32, *yBinChip); + } else { + *yBinChip = yBinTarget; + } + + // Mosaic the images together and we're done + if (allGood) { + *mosaicImage = imageMosaic(images, xFlip, yFlip, xBin, yBin, *xBinChip, *yBinChip, x0, y0); + *mosaicWeights = imageMosaic(weights, xFlip, yFlip, xBin, yBin, *xBinChip, *yBinChip, x0, y0); + *mosaicMask = imageMosaic(masks, xFlip, yFlip, xBin, yBin, *xBinChip, *yBinChip, x0, y0); + } + + // Clean up + psFree(images); + psFree(weights); + psFree(masks); + psFree(xFlip); + psFree(yFlip); + psFree(xBin); + psFree(yBin); + psFree(x0); + psFree(y0); + + return allGood; +} + +// Mosaic together the cells in a FPA +static bool fpaMosaic(psImage **mosaicImage, // The mosaic image, to be returned + psImage **mosaicMask, // The mosaic mask, to be returned + psImage **mosaicWeights, // The mosaic weights, to be returned + int *xBinFPA, int *yBinFPA, // The binning in x and y, to be returned + const pmFPA *fpa, // FPA to mosaic + const pmChip *targetChip, // Chip to which to mosaic + const pmCell *targetCell // Cell to which to mosaic + ) +{ + assert(mosaicImage); + assert(mosaicMask); + assert(mosaicWeights); + assert(xBinFPA); + assert(yBinFPA); + assert(fpa); + assert(targetChip); + assert(targetCell); + + psArray *images = psArrayAlloc(0); // Array of images that will be mosaicked + psArray *weights = psArrayAlloc(0); // Array of weight images to be mosaicked + psArray *masks = psArrayAlloc(0); // Array of mask images to be mosaicked + psVector *x0 = psVectorAlloc(0, PS_TYPE_S32); // Origin x coordinates + psVector *y0 = psVectorAlloc(0, PS_TYPE_S32); // Origin y coordinates + psVector *xBin = psVectorAlloc(0, PS_TYPE_S32); // Binning in x + psVector *yBin = psVectorAlloc(0, PS_TYPE_S32); // Binning in y + psVector *xFlip = psVectorAlloc(0, PS_TYPE_U8); // Flip in x? + psVector *yFlip = psVectorAlloc(0, PS_TYPE_U8); // Flip in y? + + // Get the target characteristics + bool mdok = true; // Status of MD lookup + int x0Target = psMetadataLookupS32(&mdok, targetChip->concepts, "CHIP.X0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.X0 is not set for the target chip; assuming 0.\n"); + FIX_CONCEPT(targetChip->concepts, "CHIP.X0", S32, 0); + } + int y0Target = psMetadataLookupS32(&mdok, targetChip->concepts, "CHIP.Y0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.Y0 is not set for the target chip; assuming 0.\n"); + FIX_CONCEPT(targetChip->concepts, "CHIP.Y0", S32, 0); + } + x0Target += psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.X0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.X0 is not set for the target cell; assuming 0.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.X0", S32, 0); + } + y0Target += psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.Y0"); + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.Y0 is not set for the target cell; assuming 0.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.Y0", S32, 0); + } + int xParityChipTarget = psMetadataLookupS32(&mdok, targetChip->concepts, "CHIP.XPARITY"); + if (!mdok || (xParityChipTarget != -1 && xParityChipTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.XPARITY is not set for the target chip; assuming 1.\n"); + FIX_CONCEPT(targetChip->concepts, "CHIP.XPARITY", S32, 1); + xParityChipTarget = 1; + } + int yParityChipTarget = psMetadataLookupS32(&mdok, targetChip->concepts, "CHIP.YPARITY"); + if (!mdok || (yParityChipTarget != -1 && yParityChipTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CHIP.YPARITY is not set for the target chip; assuming 1.\n"); + FIX_CONCEPT(targetChip->concepts, "CHIP.YPARITY", S32, 1); + yParityChipTarget = 1; + } + int xParityCellTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.XPARITY"); + if (!mdok || (xParityCellTarget != -1 && xParityCellTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.XPARITY is not set for the target cell; assuming 1.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.XPARITY", S32, 1); + xParityCellTarget = 1; + } + int yParityCellTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.YPARITY"); + if (!mdok || (yParityCellTarget != -1 && yParityCellTarget != 1)) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.YPARITY is not set for the target cell; assuming 1.\n"); + FIX_CONCEPT(targetCell->concepts, "CELL.YPARITY", S32, 1); + yParityCellTarget = 1; + } + int xParityTarget = xParityChipTarget * xParityCellTarget; + int yParityTarget = yParityChipTarget * yParityCellTarget; + + // Binning for the mosaicked chip is the minimum binning allowed by the cells + *xBinFPA = INT_MAX; + *yBinFPA = INT_MAX; + + // Set up the required inputs + bool allGood = true; // Is everything good, well-behaved? + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // The chip of interest + if (!chip || !chip->data_exists) { + continue; + } + psArray *cells = chip->cells; // The array of cells + for (int j = 0; j < cells->n; j++) { + pmCell *cell = cells->data[j]; // The cell of interest + if (!cell || !cell->data_exists) { + continue; + } + allGood |= addCell(images, masks, weights, x0, y0, xBin, yBin, xFlip, yFlip, + cell, xBinFPA, yBinFPA, true, x0Target, y0Target, + xParityTarget, yParityTarget); + } + } + + // Check to see if the target has a smaller binning in mind + int xBinTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.XBIN"); + if (mdok && xBinTarget != 0) { + *xBinFPA = xBinTarget; + } + int yBinTarget = psMetadataLookupS32(&mdok, targetCell->concepts, "CELL.YBIN"); + if (mdok && yBinTarget != 0) { + *yBinFPA = yBinTarget; + } + + // Mosaic the images together and we're done + if (allGood) { + *mosaicImage = imageMosaic(images, xFlip, yFlip, xBin, yBin, *xBinFPA, *yBinFPA, x0, y0); + *mosaicWeights = imageMosaic(weights, xFlip, yFlip, xBin, yBin, *xBinFPA, *yBinFPA, x0, y0); + *mosaicMask = imageMosaic(masks, xFlip, yFlip, xBin, yBin, *xBinFPA, *yBinFPA, x0, y0); + } + + // Clean up + psFree(images); + psFree(weights); + psFree(masks); + psFree(xFlip); + psFree(yFlip); + psFree(xBin); + psFree(yBin); + psFree(x0); + psFree(y0); + + return allGood; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Mosaic all the cells in a chip together. +// +// It is desirable to do this without using psImageOverlay (or similar) if it can be at all avoided (because +// it's really really slow in that case). There are therefore two cases: +// +// 1. The HDU is at the Chip or FPA level. This is the fast case, and only works if the HDU is "nice", by +// which I mean: +// +// - the CELL.TRIMSECs are contiguous on the HDU image +// - the CELL.PARITYs are identically +1 +// - the CELL.XBIN and CELL.YBIN are all identical +// +// Then we can just use psImageSubset to get the "mosaicked" chip. +// +// +// 2. The HDU is at the cell level, or the above requirements are not met, in which case we mosaic the cells. +// This is the slow case. We need to: +// +// - Throw away the bias regions +// - Convert all cells to common parity +// - Mosaic the cells into an HDU image using CELL.X0 and CELL.Y0 +// - Update CELL.TRIMSECs +// +// Once the demands of case 1 have been met, or case 2 has been performed, then we can create a cell to hold +// the mosaic image. + +bool pmChipMosaic(pmChip *target, const pmChip *source) +{ + // Target exists, and has only a single cell + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(target->cells, false); + if (target->cells->n != 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Target chip for mosaicking must contain a single cell.\n"); + return false; + } + pmCell *targetCell = target->cells->data[0]; // The target cell + PS_ASSERT_PTR_NON_NULL(targetCell, false); + // Source exists + PS_ASSERT_PTR_NON_NULL(source, false); + + + psImage *mosaicImage = NULL; // The mosaic image + psImage *mosaicMask = NULL; // The mosaic mask + psImage *mosaicWeights = NULL; // The mosaic weights + + // Find the HDU + psRegion *chipRegion = NULL; // Region on the HDU that corresponds to the chip + int xBin = 0, yBin = 0; // Binning for the chip mosaic + if ((chipRegion = niceChip(&xBin, &yBin, source))) { + // Case 1 --- we need only cut out the region + psTrace("psModules.camera", 1, "Case 1 mosaicking: simple cut-out.\n"); + pmHDU *hdu = source->hdu; // The HDU that has the pixels + if (!hdu || !hdu->images) { + hdu = source->parent->hdu; + } + // force limits to land on chip + psRegion bounds = psRegionForImage (hdu->images->data[0], *chipRegion); + mosaicImage = psMemIncrRefCounter(psImageSubset(hdu->images->data[0], bounds)); + if (!mosaicImage) { + psError(PS_ERR_UNKNOWN, false, "Unable to select image pixels.\n"); + return false; + } + if (hdu->masks) { + mosaicMask = psMemIncrRefCounter(psImageSubset(hdu->masks->data[0], bounds)); + if (!mosaicMask) { + psError(PS_ERR_UNKNOWN, false, "Unable to select mask pixels.\n"); + return false; + } + } + if (hdu->weights) { + mosaicWeights = psMemIncrRefCounter(psImageSubset(hdu->weights->data[0], bounds)); + if (!mosaicWeights) { + psError(PS_ERR_UNKNOWN, false, "Unable to select weight pixels.\n"); + return false; + } + } + } else { + // Case 2 --- we need to mosaic by cut and paste + psTrace("psModules.camera", 1, "Case 2 mosaicking: cut and paste.\n"); + if (!chipMosaic(&mosaicImage, &mosaicMask, &mosaicWeights, &xBin, &yBin, source, targetCell)) { + psError(PS_ERR_UNKNOWN, false, "Unable to mosaic cells.\n"); + return false; + } + chipRegion = psRegionAlloc(NAN, NAN, NAN, NAN); // We've cut and paste, so there's no valid trimsec + } + psTrace("psModules.camera", 1, "xBin,yBin: %d,%d\n", xBin, yBin); + + // Set the concepts for the target cell + psList *sourceCells = psArrayToList(source->cells); // List of cells + pmConceptsAverageCells(targetCell, sourceCells, chipRegion, NULL); + { + psMetadataItem *item = psMetadataLookup(targetCell->concepts, "CELL.X0"); + item->data.S32 = 0; + item = psMetadataLookup(targetCell->concepts, "CELL.Y0"); + item->data.S32 = 0; + item = psMetadataLookup(targetCell->concepts, "CELL.XBIN"); + item->data.S32 = xBin; + item = psMetadataLookup(targetCell->concepts, "CELL.YBIN"); + item->data.S32 = yBin; + } + + psFree(sourceCells); + psFree(chipRegion); + + // Copy the concepts + target->concepts = psMetadataCopy(target->concepts, source->concepts); // Chip level + target->parent->concepts = psMetadataCopy(target->parent->concepts, source->parent->concepts); // FPA lvl + + // Now make a new readout to go in the target cell + pmReadout *newReadout = pmReadoutAlloc(targetCell); // New readout + newReadout->image = mosaicImage; + newReadout->mask = mosaicMask; + newReadout->weight = mosaicWeights; + psFree(newReadout); // Drop reference + + // Data now exists in the targets + pmChipSetDataStatus(target, true); + pmCellSetDataStatus(targetCell, true); + newReadout->data_exists = true; + + // Update the headers + pmHDU *sourceHDU = pmHDUFromChip(source); // The HDU for the source + pmHDU *targetHDU = pmHDUFromChip(target); // The HDU for the target + targetHDU->header = psMetadataCopy(targetHDU->header, sourceHDU->header); + pmHDU *phu = pmHDUGetHighest(target->parent, target, NULL); + if (!phu) { + psError(PS_ERR_UNKNOWN, true, "Unable to find HDU after mosaicking.\n"); + return false; + } + if (!phu->header) { + phu->header = psMetadataAlloc(); + } + if (!pmConfigConformHeader(phu->header, phu->format)) { + psError(PS_ERR_UNKNOWN, false, "Unable to conform header after mosaicking.\n"); + return false; + } + + return true; +} + + +bool pmFPAMosaic(pmFPA *target, const pmFPA *source) +{ + // Target exists, and has only a single chip with single cell + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(target->chips, false); + if (target->chips->n != 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Target FPA for mosaicking must contain a single chip.\n"); + return false; + } + pmChip *targetChip = target->chips->data[0]; // The target chip + PS_ASSERT_PTR_NON_NULL(targetChip, false); + PS_ASSERT_PTR_NON_NULL(targetChip->cells, false); + if (target->chips->n != 1) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Target FPA for mosaicking must contain a single cell.\n"); + return false; + } + pmCell *targetCell = targetChip->cells->data[0]; // The target cell + PS_ASSERT_PTR_NON_NULL(targetCell, false); + // Source exists + PS_ASSERT_PTR_NON_NULL(source, false); + + psImage *mosaicImage = NULL; // The mosaic image + psImage *mosaicMask = NULL; // The mosaic mask + psImage *mosaicWeights = NULL; // The mosaic weights + + // Find the HDU + psRegion *fpaRegion = NULL; // Region on the HDU that corresponds to the FPA + int xBin = 0, yBin = 0; // Binning for the FPA mosaic + if ((fpaRegion = niceFPA(&xBin, &yBin, source))) { + // Case 1 --- we need only cut out the region + psTrace("psModules.camera", 1, "Case 1 mosaicking: simple cut-out.\n"); + pmHDU *hdu = source->hdu; // The HDU that has the pixels + mosaicImage = psMemIncrRefCounter(psImageSubset(hdu->images->data[0], *fpaRegion)); + if (hdu->masks) { + mosaicMask = psMemIncrRefCounter(psImageSubset(hdu->masks->data[0], *fpaRegion)); + } + if (hdu->weights) { + mosaicWeights = psMemIncrRefCounter(psImageSubset(hdu->weights->data[0], *fpaRegion)); + } + } else { + // Case 2 --- we need to mosaic by cut and paste + psTrace("psModules.camera", 1, "Case 2 mosaicking: cut and paste.\n"); + if (!fpaMosaic(&mosaicImage, &mosaicMask, &mosaicWeights, &xBin, &yBin, source, + targetChip, targetCell)) { + psError(PS_ERR_UNKNOWN, false, "Unable to mosaic chips.\n"); + return false; + } + fpaRegion = psRegionAlloc(NAN, NAN, NAN, NAN); // We've cut and paste, so there's no valid trimsec + } + + // Set the concepts for the target cell, and add the mosaic in + // First we need a list of cells + psList *sourceCells = psListAlloc(NULL); // List of source cells + psArray *chips = source->chips; // Array of chips + pmChip *firstSourceChip = NULL; // The first chip in the source FPA; for headers + pmCell *firstSourceCell = NULL; // The first cell in the source FPA; for headers + for (long i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (!chip || !chip->data_exists) { + continue; + } + psArray *cells = chip->cells; + for (long j = 0; j < cells->n; j++) { + pmCell *cell = cells->data[j]; // Cell of interest + if (!cell || !cell->data_exists) { + continue; + } + psListAdd(sourceCells, PS_LIST_TAIL, cell); + + // These are valid chip and cell to use for the header; grab the first such + if (!firstSourceCell && !firstSourceChip) { + firstSourceCell = cell; + firstSourceChip = chip; + } + } + } + pmConceptsAverageCells(targetCell, sourceCells, fpaRegion, NULL); + { + psMetadataItem *item = psMetadataLookup(targetCell->concepts, "CELL.X0"); + item->data.S32 = 0; + item = psMetadataLookup(targetCell->concepts, "CELL.Y0"); + item->data.S32 = 0; + item = psMetadataLookup(targetCell->concepts, "CELL.XBIN"); + item->data.S32 = xBin; + item = psMetadataLookup(targetCell->concepts, "CELL.YBIN"); + item->data.S32 = yBin; + } + psFree(sourceCells); + psFree(fpaRegion); + + // Currently, there's nothing interesting in the chip concepts that needs to be updated. + + // Copy the concepts for the target FPA + target->concepts = psMetadataCopy(target->concepts, source->concepts); + + // Now make a new readout to go in the new cell + pmReadout *newReadout = pmReadoutAlloc(targetCell); // New readout + newReadout->image = mosaicImage; + newReadout->mask = mosaicMask; + newReadout->weight = mosaicWeights; + psFree(newReadout); // Drop reference + + // Data now exists in the targets + pmChipSetDataStatus(targetChip, true); + pmCellSetDataStatus(targetCell, true); + newReadout->data_exists = true; + + // Update the headers + pmHDU *sourceHDU = pmHDUGetHighest(source, firstSourceChip, firstSourceCell); // The HDU for the source + if (!sourceHDU) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find HDU in source FPA; unable to copy headers.\n"); + return false; + } + pmHDU *targetHDU = pmHDUGetHighest(target, targetChip, targetCell); // The HDU for the target + if (!targetHDU) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find HDU in target FPA; unable to copy headers.\n"); + return false; + } + + if (sourceHDU->header) { + targetHDU->header = psMetadataCopy(targetHDU->header, sourceHDU->header); + } else if (!targetHDU->header) { + targetHDU->header = psMetadataAlloc(); + } + + if (!pmConfigConformHeader(targetHDU->header, targetHDU->format)) { + psError(PS_ERR_UNKNOWN, false, "Unable to conform header after mosaicking.\n"); + return false; + } + + return true; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAMosaic.h (revision 12167) @@ -0,0 +1,39 @@ +/* @file pmFPAMosaic.h + * @brief Functions to mosaic FPA components into a single entity + * + * @author Paul Price, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CHIP_MOSAIC_H +#define PM_CHIP_MOSAIC_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" + +/// Mosaic all cells within a chip +/// +/// Mosaics all cells within the source into a single cell within the target (which must have only a single +/// cell). Cells are placed on the chip according to the CELL.X0 and CELL.Y0 offsets. This is useful for +/// getting an image of the chip on the sky. The mosaicking is done so as to avoid performing a deep copy of +/// the pixels, if possible. +bool pmChipMosaic(pmChip *target, ///< Target chip --- may contain only a single cell + const pmChip *source ///< Source chip whose cells will be mosaicked + ); + +/// Mosaic all cells within an FPA +/// +/// Mosaics all cells within the source into a single chip with single cell within the target (which must have +/// only a single chip with single cell). Cells are placed on the FPA according to the CHIP.X0, CHIP.Y0, +/// CELL.X0 and CELL.Y0 offsets. This is useful for getting an image of the FPA on the sky. The mosaicking +/// is done so as to avoid performing a deep copy of the pixels, if possible. +bool pmFPAMosaic(pmFPA *target, ///< Target FPA --- may contain only a single chip with a single cell + const pmFPA *source ///< FPA whose chips and cells will be mosaicked + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPARead.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPARead.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPARead.c (revision 12167) @@ -0,0 +1,758 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmFPAFlags.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmConcepts.h" +#include "pmFPAHeader.h" + +#include "pmFPARead.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Definitions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Specify what to read +typedef enum { + FPA_READ_TYPE_IMAGE, // Read image + FPA_READ_TYPE_MASK, // Read mask + FPA_READ_TYPE_WEIGHT, // Read weight map + FPA_READ_TYPE_HEADER // Read header +} fpaReadType; + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Carve a readout from the image pixels +static bool readoutCarve(pmReadout *readout, // Readout to be carved up + psImage *image, // Image that will be carved + const psRegion *trimsec, // Trim section + const psList *biassecs, // Bias sections + fpaReadType type + ) +{ + assert(readout); + assert(image); + assert(trimsec); + assert(biassecs); + + // The image corresponding to the trim region + if (psRegionIsNaN(*trimsec)) { + psString regionString = psRegionToString(*trimsec); + psError(PS_ERR_UNKNOWN, true, "Invalid trim section: %s\n", regionString); + psFree(regionString); + psFree(readout); + return false; + } + psRegion region = psRegionSet(PS_MAX(trimsec->x0 - readout->col0, 0), // x0 + PS_MIN(trimsec->x1 - readout->col0, image->numCols), // x1 + PS_MAX(trimsec->y0 - readout->row0, 0), // y0 + PS_MIN(trimsec->y1 - readout->row0, image->numRows) // y1 + ); + + // place the image subset in the appropriate target location, freeing if needed + // XXX why psMemIncrRefCounter on psImageSubset?? + switch (type) { + case FPA_READ_TYPE_IMAGE: + if (readout->image) { + psFree (readout->image); + } + readout->image = psMemIncrRefCounter(psImageSubset(image, region)); + break; + case FPA_READ_TYPE_MASK: + if (readout->mask) { + psFree (readout->mask); + } + readout->mask = psMemIncrRefCounter(psImageSubset(image, region)); + break; + case FPA_READ_TYPE_WEIGHT: + if (readout->weight) { + psFree (readout->weight); + } + readout->weight = psMemIncrRefCounter(psImageSubset(image, region)); + break; + default: + psAbort("Unknown read type: %x\n", type); + } + + // Get the list of overscans + // XXX should this step only be performed for IMAGE, not MASK and WEIGHT types? + // XXX that would allow us to overlay a MASK and WEIGHT which have been trimmed... + if (readout->bias->n != 0) { + // Make way! + psFree(readout->bias); + readout->bias = psListAlloc(NULL); + } + psListIterator *iter = psListIteratorAlloc((psList*)biassecs, PS_LIST_HEAD, false); // Iterator + psRegion *biassec = NULL; // A BIASSEC region from the list + while ((biassec = psListGetAndIncrement(iter))) { + if (psRegionIsNaN(*biassec)) { + psString regionString = psRegionToString(*biassec); + psError(PS_ERR_IO, true, "Invalid bias section: %s\n", regionString); + psFree(regionString); + psFree(readout); + return false; + } + psRegion region = psRegionSet(PS_MAX(biassec->x0 - readout->col0, 0), // x0 + PS_MIN(biassec->x1 - readout->col0, image->numCols), // x1 + PS_MAX(biassec->y0 - readout->row0, 0), // y0 + PS_MIN(biassec->y1 - readout->row0, image->numRows) // y1 + ); + psImage *overscan = psMemIncrRefCounter(psImageSubset(image, region)); + psListAdd(readout->bias, PS_LIST_TAIL, overscan); + psFree(overscan); + } + psFree(iter); + + return true; +} + +// Read a component of a readout +psImage *readoutReadComponent(psImage *image, // Image into which to read + psFits *fits, // FITS file from which to read + const psRegion *region, // Region to read + int readdir, // Read direction (1=rows, 2=cols) + int min, // Minimum row/col number to read + int max, // Maximum row/col number to read + int z, // Image plane to read + float bad // Bad value + ) +{ + assert(fits); + assert(region); + + bool resize = false; // Do we need to resize the image once read? + psRegion toRead = psRegionSet(region->x0, region->x1, region->y0, region->y1); // Region to read + psRegion fullSize = toRead; // Full sized region + if (readdir == 1) { + if (toRead.y0 <= min) { + toRead.y0 = min; + } else { + fullSize.y0 = min; + resize = true; + } + if (toRead.y1 >= max) { + toRead.y1 = max; + } else { + fullSize.y1 = max; + resize = false; + } + } else if (readdir == 2) { + if (toRead.x0 <= min) { + toRead.x0 = min; + } else { + fullSize.x0 = min; + resize = true; + } + if (toRead.x1 >= max) { + toRead.x1 = max; + } else { + fullSize.x1 = max; + resize = false; + } + } else { + psAbort("Read direction can only be 1 (rows) or 2 (cols).\n"); + } + + psTrace("psModules.camera", 5, "Reading section [%.0f:%.0f,%.0f:%.0f]\n", + toRead.x0, toRead.x1, toRead.y0, toRead.y1); + image = psFitsReadImageBuffer(image, fits, toRead, z); // Desired pixels + psTrace("psModules.camera", 7, "Image is %dx%d\n", image->numCols, image->numRows); + + // XXX: We only support F32 for now + if (image->type.type != PS_TYPE_F32) { + psImage *temp = psImageCopy(NULL, image, PS_TYPE_F32); + psFree(image); + image = temp; + } + + if (resize) { + // For some reason, the region of interest is smaller than the number of pixels we want. + psTrace("psModules.camera", 5, "Resizing image to %.0fx%.0f\n", + fullSize.x1 - fullSize.x0, fullSize.y1 - fullSize.y0); + psImage *temp = psImageAlloc(fullSize.x1 - fullSize.x0, fullSize.y1 - fullSize.y0, image->type.type); + psImageInit(temp, bad); + psImageOverlaySection(temp, image, toRead.x0, toRead.y0, "="); + psFree(image); + image = temp; + } + + return image; +} + + +// Read into an cell; this is the engine for pmCellRead, pmCellReadMask, pmCellReadWeight +// Does most of the work for the reading --- reads the HDU, and portions the HDU into readouts. +static bool cellRead(pmCell *cell, // Cell into which to read + psFits *fits, // FITS file from which to read + psDB *db, // Database handle, for concepts ingest + fpaReadType type // Type to read + ) +{ + assert(cell); + assert(fits); + + pmHDU *hdu = pmHDUFromCell(cell); // The HDU + if (!hdu) { + return true; // We read everything we could + } + + // check if we have read the desired data, read it if needed + bool (*hduReadFunc)(pmHDU*, psFits*) = NULL; // Function to use to read the HDU + void *dataPointer = NULL; // pointer to location of desired data + switch (type) { + case FPA_READ_TYPE_IMAGE: + hduReadFunc = pmHDURead; + dataPointer = hdu->images; + break; + case FPA_READ_TYPE_HEADER: + hduReadFunc = pmHDUReadHeader; + dataPointer = hdu->header; + break; + case FPA_READ_TYPE_MASK: + hduReadFunc = pmHDUReadMask; + dataPointer = hdu->masks; + break; + case FPA_READ_TYPE_WEIGHT: + hduReadFunc = pmHDUReadWeight; + dataPointer = hdu->weights; + break; + default: + psAbort("Unknown read type: %x\n", type); + } + + // do we have the data we want (image, header, or etc). + if (!dataPointer) { + // attempt to read in the desired data + if (!hduReadFunc(hdu, fits)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read HDU for cell.\n"); + return false; + } + } + + // load in the concept information for this cell + if (!pmConceptsReadCell(cell, PM_CONCEPT_SOURCE_HEADER, true, NULL)) { + //psError(PS_ERR_UNKNOWN, false, "Failed to read concepts for cell"); + //return false; + psWarning("Difficulty reading concepts for cell; attempting to proceed."); + } + + // skip the image arrays completely for the header-only files + if (type == FPA_READ_TYPE_HEADER) { + pmCellSetDataStatus(cell, true); + return true; + } + + // set up pointers for the different possible image arrays + psArray *imageArray = NULL; // Array of images in the HDU + psElemType imageType = PS_TYPE_F32; // Expected type for image + switch (type) { + case FPA_READ_TYPE_IMAGE: + imageArray = hdu->images; + imageType = PS_TYPE_F32; + break; + case FPA_READ_TYPE_MASK: + imageArray = hdu->masks; + imageType = PS_TYPE_MASK; + break; + case FPA_READ_TYPE_WEIGHT: + imageArray = hdu->weights; + imageType = PS_TYPE_F32; + break; + default: + psAbort("Unknown read type: %x\n", type); + } + + // Having read the cell, we now have to cut it up + psRegion *trimsec = psMetadataLookupPtr(NULL, cell->concepts, "CELL.TRIMSEC"); + psList *biassecs = psMetadataLookupPtr(NULL, cell->concepts, "CELL.BIASSEC"); + if (psRegionIsNaN(*trimsec)) { + psError(PS_ERR_IO, false, "CELL.TRIMSEC is not set --- can't read cell.\n"); + return false; + } + + // Iterate over each of the image planes, converting type if necessary, and extracting the bits that + // matter (CELL.TRIMSEC, CELL.BIASSEC) into readouts with readoutCarve. + for (int i = 0; i < imageArray->n; i++) { + psImage *source = imageArray->data[i]; // Source image, from the i-th plane + + // Type conversion here to support the modules, which don't have multiple type support yet + if (source->type.type != imageType) { + psImage *temp = psImageCopy(NULL, source, imageType); // Temporary image + psFree(imageArray->data[i]); + imageArray->data[i] = temp; + source = temp; + } + + pmReadout *readout; // Readout into which to read + if (cell->readouts->n > i && cell->readouts->data[i]) { + readout = psMemIncrRefCounter(cell->readouts->data[i]); + } else { + readout = pmReadoutAlloc(cell); + } + + if (!readoutCarve(readout, source, trimsec, biassecs, type)) { + psError(PS_ERR_UNEXPECTED_NULL, false, + "Unable to carve readout into image and bias sections for %d the plane.", i); + return NULL; + } + psFree(readout); // Drop reference + } + + pmCellSetDataStatus(cell, true); + return true; +} + + +// Read into an chip; this is the engine for pmChipRead, pmChipReadMask, pmChipReadWeight +// Iterates over component cells, reading each +static bool chipRead(pmChip *chip, // Chip into which to read + psFits *fits, // FITS file from which to read + psDB *db, // Database handle, for concepts ingest + fpaReadType type // Type to read + ) +{ + assert(chip); + assert(fits); + + bool success = false; // Were we able to read at least one HDU? + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // The cell of interest + success |= cellRead(cell, fits, db, type); + } + if (success) { + if (!pmConceptsReadChip(chip, PM_CONCEPT_SOURCE_HEADER, true, true, NULL)) { + psError(PS_ERR_IO, false, "Failed to read concepts for FPA.\n"); + return false; + } + // XXX probably could just use chip->data_exists + pmChipSetDataStatus(chip, true); + } + + return success; +} + + +// Read into an FPA; this is the engine for pmFPARead, pmFPAReadMask, pmFPAReadWeight +// Iterates over component chips, reading each +static bool fpaRead(pmFPA *fpa, // FPA into which to read + psFits *fits, // FITS file from which to read + psDB *db, // Database handle, for concepts ingest + fpaReadType type // Type to read + ) +{ + assert(fpa); + assert(fits); + + bool success = false; // Were we able to read at least one HDU? + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // The cell of interest + success |= chipRead(chip, fits, db, type); + } + if (success) { + if (!pmConceptsReadFPA(fpa, PM_CONCEPT_SOURCE_HEADER, true, NULL)) { + psError(PS_ERR_IO, false, "Failed to read concepts for FPA.\n"); + return false; + } + } else { + psError(PS_ERR_UNKNOWN, false, "Unable to read any chips in FPA"); + } + + return success; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Reading images +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmReadoutReadNext(pmReadout *readout, psFits *fits, int z, int numScans) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + PS_ASSERT_INT_NONNEGATIVE(z, false); + PS_ASSERT_INT_NONNEGATIVE(numScans, false); + + // Get the HDU and read the header + pmCell *cell = readout->parent; // The parent cell + + pmHDU *hdu = pmHDUFromCell(cell); // The HDU + if (!hdu || hdu->blankPHU) { + return false; + } + + if (!pmCellReadHeader(cell, fits)) { + psError(PS_ERR_IO, false, "Unable to read header for cell!\n"); + return false; + } + + // Make sure we have the information we need + if (!pmConceptsReadCell(cell, PM_CONCEPT_SOURCE_HEADER | PM_CONCEPT_SOURCE_CELLS | + PM_CONCEPT_SOURCE_DEFAULTS, true, NULL)) { + psError(PS_ERR_IO, false, "Failed to read concepts for cell.\n"); + return false; + } + + // Get the trim and bias sections + bool mdok = true; // Status of MD lookup + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim sections + if (!mdok || !trimsec || psRegionIsNaN(*trimsec)) { + psError(PS_ERR_IO, true, "CELL.TRIMSEC is not set.\n"); + return false; + } + psList *biassecs = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.BIASSEC"); // Bias sections + if (!mdok || !biassecs) { + psError(PS_ERR_IO, true, "CELL.BIASSEC is not set.\n"); + return false; + } + int readdir = psMetadataLookupS32(&mdok, cell->concepts, "CELL.READDIR"); // Read direction + if (!mdok || readdir == 0 || (readdir != 1 && readdir != 2)) { + psError(PS_ERR_IO, true, "CELL.READDIR is not set to -1 or +1.\n"); + return false; + } + float bad = psMetadataLookupF32(&mdok, cell->concepts, "CELL.BAD"); // Bad level + if (!mdok) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.BAD is not set --- assuming zero.\n"); + bad = 0.0; + } + + // Check the third dimension + int naxis = psMetadataLookupS32(&mdok, hdu->header, "NAXIS"); // The number of axes + if (!mdok) { + psError(PS_ERR_IO, true, "Unable to find NAXIS in header for extension %s\n", hdu->extname); + return false; + } + if (naxis == 0) { + // No pixels to read, as for a PHU. + return false; + } + if (naxis < 2 || naxis > 3) { + psError(PS_ERR_IO, true, "NAXIS in header of extension %s (= %d) is not valid.\n", + hdu->extname, naxis); + return false; + } + int naxis3 = 1; // The number of image planes + if (naxis == 3) { + naxis3 = psMetadataLookupS32(&mdok, hdu->header, "NAXIS3"); + if (!mdok) { + psError(PS_ERR_IO, true, "Unable to find NAXIS3 in header for extension %s\n", hdu->extname); + return false; + } + } + if (z >= naxis3) { + // Nothing to see here. Move along. + return false; + } + + // Get the size of the image plane + int naxis1 = psMetadataLookupS32(&mdok, hdu->header, "NAXIS1"); // The number of columns + if (!mdok) { + psError(PS_ERR_IO, true, "Unable to find NAXIS1 in header for extension %s\n", hdu->extname); + return false; + } + int naxis2 = psMetadataLookupS32(&mdok, hdu->header, "NAXIS2"); // The number of columns + if (!mdok) { + psError(PS_ERR_IO, true, "Unable to find NAXIS2 in header for extension %s\n", hdu->extname); + return false; + } + + // rationalize trimsec against naxis1, naxis2 + // valid range for trimsec is 1-Nx,1-Ny + // if (trimsec->x0 == 0) trimsec->x0 = 1; + if (trimsec->x1 < 1) + trimsec->x1 = naxis1 + trimsec->x1; + // if (trimsec->y0 == 0) trimsec->y0 = 1; + if (trimsec->y1 < 1) + trimsec->y1 = naxis2 + trimsec->y1; + + int maxSize; // Number of cols,rows in image + if (readdir == 1) { + maxSize = PS_MIN(naxis2, trimsec->y1); + } else { + maxSize = PS_MIN(naxis1, trimsec->x1); + } + + // Read the FITS image + int offset = 0; // The offset from the start of the image to where we are now + if (readout->image) { + if (readdir == 1) { + // Reading rows + if (numScans == 0) { + numScans = naxis2 - readout->row0; + } + readout->row0 += readout->image->numRows; + offset = readout->row0; + } else { + // Reading columns + if (numScans == 0) { + numScans = naxis1 - readout->col0; + } + readout->col0 += readout->image->numCols; + offset = readout->col0; + } + } else { + if (numScans == 0) { + if (readdir == 1) { + numScans = naxis2; + } else + numScans = naxis1; + } + } + + // Blow away existing data. + // Do this before returning, so that we're not returning data from a previous read + psFree(readout->image); + readout->image = NULL; + + while (readout->bias->n > 0) { + psListRemove(readout->bias, PS_LIST_HEAD); + } + + if (offset >= maxSize) { + // We've read everything there is + psTrace("psModules.camera", 7, "Read everything.\n"); + psFree(readout->image); + return false; + } + int upper = PS_MIN(offset + numScans, maxSize); // The upper limit for the pixel read + psTrace("psModules.camera", 7, "offset=%d, upper = %d, image is %dx%d, trimsec [%.0f:%.0f,%.0f:%.0f]\n", + offset, upper, naxis1, naxis2, trimsec->x0, trimsec->x1, trimsec->y0, trimsec->y1); + + // Get the new the trim section + readout->image = readoutReadComponent(readout->image, fits, trimsec, readdir, + offset, upper, z, bad); // The image + + // Get the new bias sections + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, false); // Iterator for BIASSEC + psRegion *biassec = NULL; // Bias section from iteration + while ((biassec = psListGetAndIncrement(biassecsIter))) { + psImage *bias = readoutReadComponent(NULL, fits, biassec, readdir, offset, upper, z, bad); // The bias + psListAdd(readout->bias, PS_LIST_TAIL, bias); + psFree(bias); // Drop reference + } + psFree(biassecsIter); + + return true; +} + + +bool pmCellRead(pmCell *cell, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return cellRead(cell, fits, db, FPA_READ_TYPE_IMAGE); +} + +bool pmChipRead(pmChip *chip, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return chipRead(chip, fits, db, FPA_READ_TYPE_IMAGE); +} + +bool pmFPARead(pmFPA *fpa, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return fpaRead(fpa, fits, db, FPA_READ_TYPE_IMAGE); +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Reading the mask +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmCellReadMask(pmCell *cell, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return cellRead(cell, fits, db, FPA_READ_TYPE_MASK); +} + +bool pmChipReadMask(pmChip *chip, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return chipRead(chip, fits, db, FPA_READ_TYPE_MASK); +} + +bool pmFPAReadMask(pmFPA *fpa, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return fpaRead(fpa, fits, db, FPA_READ_TYPE_MASK); +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Reading the weight map +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmCellReadWeight(pmCell *cell, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return cellRead(cell, fits, db, FPA_READ_TYPE_WEIGHT); +} + +bool pmChipReadWeight(pmChip *chip, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return chipRead(chip, fits, db, FPA_READ_TYPE_WEIGHT); +} + +bool pmFPAReadWeight(pmFPA *fpa, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return fpaRead(fpa, fits, db, FPA_READ_TYPE_WEIGHT); +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Reading the image header +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmCellReadHeaderSet(pmCell *cell, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return cellRead(cell, fits, db, FPA_READ_TYPE_HEADER); +} + +bool pmChipReadHeaderSet(pmChip *chip, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return chipRead(chip, fits, db, FPA_READ_TYPE_HEADER); +} + +bool pmFPAReadHeaderSet(pmFPA *fpa, psFits *fits, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return fpaRead(fpa, fits, db, FPA_READ_TYPE_HEADER); +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Reading FITS tables +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +int pmCellReadTable(pmCell *cell, psFits *fits, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(cell, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + const char *chipName = psMetadataLookupStr(NULL, cell->parent->concepts, "CHIP.NAME"); // Name of chip + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); // Name of cell + psString extname = NULL; // Extension name + psStringAppend(&extname, "%s_%s_%s", name, chipName, cellName); + + // XXX Could do a table lookup from the camera format, in case the input file isn't laid out with + // NAME_CHIP_CELL extension names --- use these as keys, and the value as the proper extension name. + // Allow interpolation of concepts, e.g., "{CHIP.NAME}" --> "ccd13". + + if (!psFitsMoveExtName(fits, extname)) { + psError(PS_ERR_IO, false, "Unable to move to extension %s\n", extname); + psFree(extname); + return 0; + } + + psMetadata *header = psFitsReadHeader(NULL, fits); // The FITS header + if (!header) { + psError(PS_ERR_IO, false, "Unable to read header for extension %s\n", extname); + psFree(extname); + psFree(header); + return 0; + } + + psString headerName = NULL; // Name for header + psStringAppend(&headerName, "%s.HEADER", name); + if (!psMetadataAdd(cell->analysis, PS_LIST_TAIL, headerName, PS_DATA_METADATA, + "FITS table header", header)) { + psError(PS_ERR_UNKNOWN, false, "Unable to add header from extension %s to analysis metadata " + "for chip %s, cell %s\n", extname, chipName, cellName); + psFree(headerName); + psFree(header); + psFree(extname); + return 0; + } + psFree(headerName); + psFree(header); + + psArray *table = psFitsReadTable(fits); // The table + if (!psMetadataAdd(cell->analysis, PS_LIST_TAIL, name, PS_DATA_ARRAY, "FITS table", table)) { + psError(PS_ERR_UNKNOWN, false, "Unable to add table from extension %s to analysis metadata " + "for chip %s, cell %s\n", extname, chipName, cellName); + psFree(table); + psFree(extname); + return 0; + } + + psFree(extname); + psFree(table); // Dropping reference + + return 1; +} + + +int pmChipReadTable(pmChip *chip, psFits *fits, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(chip, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + int numRead = 0; // Number of reads + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + numRead += pmCellReadTable(cell, fits, name); + } + + return numRead; +} + + +int pmFPAReadTable(pmFPA *fpa, psFits *fits, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(fpa, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + int numRead = 0; // Number of reads + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + numRead += pmChipReadTable(chip, fits, name); + } + + return numRead; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPARead.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPARead.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPARead.h (revision 12167) @@ -0,0 +1,159 @@ +/* @file pmFPARead.h + * @brief Functions to read FPA components from a FITS file + * + * @author Paul Price, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-15 00:34:00 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_READ_H +#define PM_FPA_READ_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include +#include "pmFPA.h" + +/// Read a readout incrementally +/// +/// Multiple calls to this function moves through a readout within a cell incrementally. It is required to +/// pass the readout previously acquired (or a newly-allocated one) in order to preserve state information +/// (where the read is at). Only a maximum of numRows rows are read at a time. Returns true if pixels are +/// read, and false otherwise. To facilitate looping, no error is generated for reading a plane that doesn't +/// exist. Note that this function doesn't put pixels in the HDU. It is therefore NOT COMPATIBLE with +/// pmCellWrite, pmChipWrite, and pmFPAWrite (or any function that uses or creates an HDU for that matter). +/// Use pmReadoutWriteNext to write the data that's read by this function. This function is intended for +/// reading in many readouts into memory at once (e.g., for stacking) where the input is not written out. +bool pmReadoutReadNext(pmReadout *readout, // Readout into which to read + psFits *fits, // FITS file from which to read + int z, // Readout number/plane; zero-offset indexing + int numRows // The number of rows to read + ); + +/// Read an entire cell +/// +/// Reads the appropriate HDU, ingests concepts from the header, and portions pixels into readouts. Pixels +/// are converted to F32. +bool pmCellRead(pmCell *cell, // Cell to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read a chip +/// +/// Iterates over component cells, reading each with pmCellRead. +bool pmChipRead(pmChip *chip, // Chip to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an FPA +/// +/// Iterates over component chips, reading each with pmChipRead. +bool pmFPARead(pmFPA *fpa, // FPA to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire cell into the mask +/// +/// Same as pmCellRead, but reads into the mask element of the readouts. +bool pmCellReadMask(pmCell *cell, // Cell to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire chip into the mask +/// +/// Same as pmChipRead, but reads into the mask element of the readouts. +bool pmChipReadMask(pmChip *chip, // Chip to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire FPA into the mask +/// +/// Same as pmFPARead, but reads into the mask element of the readouts. +bool pmFPAReadMask(pmFPA *fpa, // FPA to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire cell into the weight +/// +/// Same as pmCellRead, but reads into the weight element of the readouts. +bool pmCellReadWeight(pmCell *cell, // Cell to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire chip into the weight +/// +/// Same as pmChipRead, but reads into the weight element of the readouts. +bool pmChipReadWeight(pmChip *chip, // Chip to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read an entire FPA into the weight +/// +/// Same as pmFPARead, but reads into the weight element of the readouts. +bool pmFPAReadWeight(pmFPA *fpa, // FPA to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read cell headers +/// +/// Same as pmCellRead, but reads only the headers of the readouts. +bool pmCellReadHeaderSet(pmCell *cell, // Cell to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read chip headers +/// +/// Same as pmChipRead, but reads only the headers of the readouts. +bool pmChipReadHeaderSet(pmChip *chip, // Chip to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read FPA headers +/// +/// Same as pmFPARead, but reads only the headers of the readouts. +bool pmFPAReadHeaderSet(pmFPA *fpa, // FPA to read into + psFits *fits, // FITS file from which to read + psDB *db // Database handle, for "concepts" ingest + ); + +/// Read a FITS table into the cell +/// +/// Given a name, which is combined with the chip and cell to identify the extension name ("NAME_CHIP_CELL"), +/// read the FITS table into the cell analysis metadata (with key being the provided name). The header is +/// also read and included in the cell analysis metadata under "name.HEADER". +int pmCellReadTable(pmCell *cell, ///< Cell for which to read table + psFits *fits, ///< FITS file from which the table + const char *name ///< Specifies the extension name, and target in the analysis metadata + ); + +/// Read a FITS table into the component cells +/// +/// Iterates over component cells, calling pmCellReadTable. +int pmChipReadTable(pmChip *chip, ///< Cell for which to read table + psFits *fits, ///< FITS file from which the table + const char *name ///< Specifies the extension name, and target in the analysis metadata + ); + +/// Read a FITS table into the component cells +/// +/// Iterates over component chips, calling pmChipReadTable. +int pmFPAReadTable(pmFPA *fpa, ///< Cell for which to read table + psFits *fits, ///< FITS file from which the table + const char *name ///< Specifies the extension name, and target in the analysis metadata + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAUtils.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAUtils.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAUtils.c (revision 12167) @@ -0,0 +1,54 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include +#include "pmFPA.h" +#include "pmFPAUtils.h" + +int pmFPAFindChip(const pmFPA *fpa, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(fpa, -1); + PS_ASSERT_PTR_NON_NULL(name, -1); + if (strlen(name) == 0) { + return -1; + } + + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // The chip of interest + psString testName = psMetadataLookupStr(NULL, chip->concepts, "CHIP.NAME"); // Name of this chip + if (strcmp(name, testName) == 0) { + return i; + } + } + + psError(PS_ERR_IO, true, "Unable to find chip %s\n", name); + return -1; +} + + +int pmChipFindCell(const pmChip *chip, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(chip, -1); + PS_ASSERT_PTR_NON_NULL(name, -1); + if (strlen(name) == 0) { + return -1; + } + + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // The cell of interest + psString testName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); // Name of this cell + if (strcmp(name, testName) == 0) { + return i; + } + } + + psError(PS_ERR_IO, true, "Unable to find cell %s\n", name); + return -1; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAUtils.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAUtils.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAUtils.h (revision 12167) @@ -0,0 +1,35 @@ +/* @file pmFPAUtils.h + * @brief Utility functions for FPAs + * + * @author Paul Price, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_UTILS_H +#define PM_FPA_UTILS_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" + +/// Find a chip by name; return the index +/// +/// Looks for a chip within the FPA with CHIP.NAME matching the provided name. Returns the index of the chip, +/// or -1 if it was not found. +int pmFPAFindChip(const pmFPA *fpa, ///< FPA in which to find the chip + const char *name ///< Name of the chip + ); + +/// Find a cell by name; return the index +/// +/// Looks for a cell within the chip with CELL.NAME matching the provided name. Returns the index of the +/// cell, or -1 if it was not found. +int pmChipFindCell(const pmChip *chip, // Chip in which to find the cell + const char *name // Name of the cell + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAWrite.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAWrite.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAWrite.c (revision 12167) @@ -0,0 +1,494 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmHDUGenerate.h" +#include "pmConcepts.h" + +#include "pmFPAWrite.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Definitions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Specify what to read +typedef enum { + FPA_WRITE_TYPE_IMAGE, // Write image + FPA_WRITE_TYPE_MASK, // Write mask + FPA_WRITE_TYPE_WEIGHT // Write weight map +} fpaWriteType; + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static (private) functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + + +// Update the FPA.NAME, CHIP.NAME and CELL.NAME in the FITS header, if required +static bool updateNames(pmFPA *fpa, pmChip *chip, pmCell *cell) +{ + pmHDU *hdu = pmHDUGetHighest(fpa, chip, cell); // Highest HDU, i.e., the PHU + if (!hdu) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find HDU.\n"); + return false; + } + if (!hdu->header) { + hdu->header = psMetadataAlloc(); + } + bool mdok; // Status of MD lookup + psMetadata *fileData = psMetadataLookupMetadata(&mdok, hdu->format, "FILE"); // File information + if (!mdok || !fileData) { + psError(PS_ERR_UNKNOWN, true, "Unable to find FILE information in camera format.\n"); + return false; + } + if (fpa) { + const char *fpaNameHdr = psMetadataLookupStr(&mdok, fileData, "FPA.NAME"); + if (mdok && fpaNameHdr && strlen(fpaNameHdr) > 0) { + const char *fpaName = psMetadataLookupStr(NULL, fpa->concepts, "FPA.NAME"); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, fpaNameHdr, PS_META_REPLACE, "FPA name", fpaName); + } + } + if (chip) { + const char *chipNameHdr = psMetadataLookupStr(&mdok, fileData, "CHIP.NAME"); + if (mdok && chipNameHdr && strlen(chipNameHdr) > 0) { + const char *chipName = psMetadataLookupStr(NULL, chip->concepts, "CHIP.NAME"); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, chipNameHdr, PS_META_REPLACE, "Chip name", chipName); + } + } + if (cell) { + const char *cellNameHdr = psMetadataLookupStr(&mdok, fileData, "CELL.NAME"); + if (mdok && cellNameHdr && strlen(cellNameHdr) > 0) { + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, cellNameHdr, PS_META_REPLACE, "Cell name", cellName); + } + } + return true; +} + +// Return the appropriate image array for the given type +static psArray **appropriateImageArray(pmHDU *hdu, // HDU containing the image arrays + fpaWriteType type // Type to write + ) +{ + switch (type) { + case FPA_WRITE_TYPE_IMAGE: + return &hdu->images; + case FPA_WRITE_TYPE_MASK: + return &hdu->masks; + case FPA_WRITE_TYPE_WEIGHT: + return &hdu->weights; + default: + psAbort("Unknown write type: %x\n", type); + } + return NULL; +} + +// Run the appropriate HDU write function +static bool appropriateWriteFunc(pmHDU *hdu, // HDU to write + psFits *fits, // FITS file to which to write + fpaWriteType type // Type to write + ) +{ + switch (type) { + case FPA_WRITE_TYPE_IMAGE: + return pmHDUWrite(hdu, fits); + case FPA_WRITE_TYPE_MASK: + return pmHDUWriteMask(hdu, fits); + case FPA_WRITE_TYPE_WEIGHT: + return pmHDUWriteWeight(hdu, fits); + default: + psAbort("Unknown write type: %x\n", type); + } + return false; +} +// Write a cell image/mask/weight +static bool cellWrite(pmCell *cell, // Cell to write + psFits *fits, // FITS file to which to write + psDB *db, // Database handle for "concepts" update + bool blank, // Write a blank PHU? + fpaWriteType type // Type to write + ) +{ + assert(cell); + assert(fits); + + psTrace ("pmFPAWrite", 5, "writing to Cell (%d)\n", blank); + + pmHDU *hdu = cell->hdu; // The HDU + if (!hdu) { + return true; // We wrote every HDU that exists + } + + psArray **imageArray = appropriateImageArray(hdu, type); // Array of images in the HDU + + // Generate the HDU if needed --- this is required after a pmFPACopy, or similar, which does not + // generate the HDU, but only copies the structure. + if (!blank && !hdu->blankPHU && !*imageArray && (!pmHDUGenerateForCell(cell) || !*imageArray)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate HDU for cell --- likely programming error.\n"); + return false; + } + + // We only write out a blank PHU if it's specifically requested. + bool writeBlank = blank && hdu->blankPHU && !*imageArray; // Write a blank PHU? + bool writeImage = !blank && !hdu->blankPHU && *imageArray; // Write an image? + + if (writeBlank || writeImage) { + + updateNames(cell->parent->parent, cell->parent, cell); + pmConceptSource source = PM_CONCEPT_SOURCE_HEADER | PM_CONCEPT_SOURCE_CELLS | + PM_CONCEPT_SOURCE_DEFAULTS; + if (!pmConceptsWriteCell(cell, source, true, NULL)) { + psError(PS_ERR_IO, false, "Unable to write concepts for cell.\n"); + return false; + } + if (!appropriateWriteFunc(hdu, fits, type)) { + psError(PS_ERR_IO, false, "Unable to write HDU for cell.\n"); + return false; + } + } + // No lower levels to which to recurse + + return true; +} + +// Write a chip image/mask/weight +static bool chipWrite(pmChip *chip, // Chip to write + psFits *fits, // FITS file to which to write + psDB *db, // Database handle for "concepts" update + bool blank, // Write a blank PHU? + bool recurse, // Recurse to lower levels? + fpaWriteType type // Type to write + ) +{ + assert(chip); + assert(fits); + + pmHDU *hdu = chip->hdu; // The HDU + + psTrace ("pmFPAWrite", 5, "writing to Chip (%d, %d)\n", blank, recurse); + + // If we have data at this level, try to write it out + if (hdu) { + psArray **imageArray = appropriateImageArray(hdu, type); // Array of images in HDU + + // Generate the HDU if needed --- this is required after a pmFPACopy, or similar, which does not + // generate the HDU, but only copies the structure. + if (!blank && !hdu->blankPHU && !*imageArray && (!pmHDUGenerateForChip(chip) || !*imageArray)) { + psError(PS_ERR_UNKNOWN, false, + "Unable to generate HDU for chip --- likely programming error.\n"); + return false; + } + + // We only write out a blank PHU if it's specifically requested. + bool writeBlank = blank && hdu->blankPHU && !*imageArray; // Write a blank HDU? + bool writeImage = !blank && !hdu->blankPHU && *imageArray; // Write an image? + + if (writeBlank || writeImage) { + updateNames(chip->parent, chip, NULL); + pmConceptSource source = PM_CONCEPT_SOURCE_HEADER | PM_CONCEPT_SOURCE_CELLS | + PM_CONCEPT_SOURCE_DEFAULTS; + if (!pmConceptsWriteChip(chip, source, true, true, NULL)) { + psError(PS_ERR_IO, false, "Unable to write concepts for chip.\n"); + return false; + } + if (!appropriateWriteFunc(hdu, fits, type)) { + psError(PS_ERR_IO, false, "Unable to write HDU for chip.\n"); + return false; + } + } + } + + // Recurse to lower level if specifically requested. + // XXX recursion implies blank == false (must be called on correct level?) + if (recurse) { + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // The cell of interest + if (!cellWrite(cell, fits, db, false, type)) { + psError(PS_ERR_IO, false, "Unable to write Chip.\n"); + return false; + } + } + } + + return true; +} + + +// Write an FPA image/mask/weight +static bool fpaWrite(pmFPA *fpa, // FPA to write + psFits *fits, // FITS file to which to write + psDB *db, // Database handle for "concepts" update + bool blank, // Write a blank PHU? + bool recurse, // Recurse to lower levels? + fpaWriteType type // Type to write + ) +{ + assert(fpa); + assert(fits); + + pmHDU *hdu = fpa->hdu; // The HDU + + psTrace ("pmFPAWrite", 5, "writing to FPA (%d, %d)\n", blank, recurse); + + // If we have data at this level, try to write it out + if (hdu) { + psArray **imageArray = appropriateImageArray(hdu, type); // Array of images in HDU + + // Generate the HDU if needed --- this is required after a pmFPACopy, or similar, which does not + // generate the HDU, but only copies the structure. + if (!blank && !hdu->blankPHU && !*imageArray && (!pmHDUGenerateForFPA(fpa) || !*imageArray)) { + psError(PS_ERR_UNKNOWN, false, + "Unable to generate HDU for FPA --- likely programming error.\n"); + return false; + } + + // We only write out a blank PHU if it's specifically requested. + bool writeBlank = blank && hdu->blankPHU && !*imageArray; // Write a blank PHU? + bool writeImage = !blank && !hdu->blankPHU && *imageArray; // Write an image? + + if (writeBlank || writeImage) { + updateNames(fpa, NULL, NULL); + pmConceptSource source = PM_CONCEPT_SOURCE_HEADER | PM_CONCEPT_SOURCE_CELLS | + PM_CONCEPT_SOURCE_DEFAULTS; + if (!pmConceptsWriteFPA(fpa, source, true, NULL)) { + psError(PS_ERR_IO, false, "Unable to write concepts for FPA.\n"); + return false; + } + if (!appropriateWriteFunc(hdu, fits, type)) { + psError(PS_ERR_IO, false, "Unable to write HDU for FPA.\n"); + return false; + } + } + } + + // Recurse to lower levels if requested + if (recurse) { + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // The chip of interest + if (!chipWrite(chip, fits, db, false, true, type)) { + psError(PS_ERR_IO, false, "Unable to write FPA.\n"); + return false; + } + } + } + + return true; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmReadoutWriteNext(pmReadout *readout, psFits *fits, int z) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + pmHDU *hdu = pmHDUFromReadout(readout); // The HDU to which to write + if (!hdu) { + psError(PS_ERR_IO, false, "Unable to find HDU for readout.\n"); + return false; + } + psMetadata *header = hdu->header; // The FITS header + if (!header) { + psError(PS_ERR_IO, true, "No FITS header available in the HDU.\n"); + return false; + } + + // We have to rely to a great extent on the FITS header, because otherwise we simply don't know how many + // image planes there are (NAXIS3) or the size of the original image (NAXIS1, NAXIS2). + bool mdok = true; // Status of MD lookup + int naxis1 = psMetadataLookupS32(&mdok, header, "NAXIS1"); // Number of columns + if (!mdok || naxis1 <= 0) { + psError(PS_ERR_IO, true, "Can't find NAXIS1 in header.\n"); + return false; + } + int naxis2 = psMetadataLookupS32(&mdok, header, "NAXIS2"); // Number of rows + if (!mdok || naxis2 <= 0) { + psError(PS_ERR_IO, true, "Can't find NAXIS2 in header.\n"); + return false; + } + int naxis3 = psMetadataLookupS32(&mdok, header, "NAXIS3"); // Number of image planes + if (!mdok || naxis3 <= 0) { + naxis3 = 1; + } + if (z >= naxis3) { + psError(PS_ERR_IO, true, "Specified a plane number (%d) greater than NAXIS3 allows.\n", z); + return false; + } + + if (!hdu->images) { + psError(PS_ERR_IO, true, "No images allocated in HDU.\n"); + return false; + } + psImage *image = readout->image; // The image from the HDU to write + if (readout->row0 == 0 && readout->col0 == 0 && z == 0) { + // Then we can assume that nothing has been written to the FITS file for now + if (naxis1 == image->numCols && naxis2 == image->numRows) { + // We can write the whole lot at once + return psFitsWriteImage(fits, header, image, z, hdu->extname); + } + // Create a dummy image so we can write something larger than we actually have + psImage *dummy = psImageAlloc(naxis1, naxis2, image->type.type); // Dummy image + psImageInit(dummy, 0); + psImageOverlaySection(dummy, image, 0, 0, "="); + bool result = psFitsWriteImage(fits, header, dummy, z, hdu->extname); + psFree(dummy); + return result; + } + + // We can simply update an existing HDU + if (hdu->blankPHU && !psFitsMoveExtNum(fits, 0, false)) { + psError(PS_ERR_IO, false, "Unable to move to PHU\n"); + return false; + } + return psFitsUpdateImage(fits, image, readout->col0, readout->row0, z); +} + + +bool pmCellWrite(pmCell *cell, psFits *fits, psDB *db, bool blank) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return cellWrite(cell, fits, db, blank, FPA_WRITE_TYPE_IMAGE); +} + +bool pmChipWrite(pmChip *chip, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return chipWrite(chip, fits, db, blank, recurse, FPA_WRITE_TYPE_IMAGE); +} + +bool pmFPAWrite(pmFPA *fpa, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return fpaWrite(fpa, fits, db, blank, recurse, FPA_WRITE_TYPE_IMAGE); +} + + +bool pmCellWriteMask(pmCell *cell, psFits *fits, psDB *db, bool blank) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return cellWrite(cell, fits, db, blank, FPA_WRITE_TYPE_IMAGE); +} + +bool pmChipWriteMask(pmChip *chip, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return chipWrite(chip, fits, db, blank, recurse, FPA_WRITE_TYPE_MASK); +} + +bool pmFPAWriteMask(pmFPA *fpa, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return fpaWrite(fpa, fits, db, blank, recurse, FPA_WRITE_TYPE_MASK); +} + + +bool pmCellWriteWeight(pmCell *cell, psFits *fits, psDB *db, bool blank) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return cellWrite(cell, fits, db, blank, FPA_WRITE_TYPE_WEIGHT); +} + +bool pmChipWriteWeight(pmChip *chip, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return chipWrite(chip, fits, db, blank, recurse, FPA_WRITE_TYPE_WEIGHT); +} + +bool pmFPAWriteWeight(pmFPA *fpa, psFits *fits, psDB *db, bool blank, bool recurse) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + return fpaWrite(fpa, fits, db, blank, recurse, FPA_WRITE_TYPE_WEIGHT); +} + + +int pmCellWriteTable(psFits *fits, const pmCell *cell, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(cell, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + const char *chipName = psMetadataLookupStr(NULL, cell->parent->concepts, "CHIP.NAME"); // Name of chip + const char *cellName = psMetadataLookupStr(NULL, cell->concepts, "CELL.NAME"); // Name of cell + + psArray *table = psMetadataLookupPtr(NULL, cell->analysis, name); // The FITS table + if (!table) { + // We wrote everything we could find + return 0; + } + + psString headerName = NULL; // Name for header in analysis metadata + psStringAppend(&headerName, "%s.HEADER", name); + psMetadata *header = psMetadataLookupMetadata(NULL, cell->analysis, headerName); // The FITS header + psFree(headerName); + + psString extname = NULL; // Extension name + psStringAppend(&extname, "%s_%s_%s", name, chipName, cellName); + + // XXX Could do a table lookup from the camera format, in case the input file isn't laid out with + // NAME_CHIP_CELL extension names --- use these as keys, and the value as the proper extension name. + // Allow interpolation of concepts, e.g., "{CHIP.NAME}" --> "ccd13". + + if (!psFitsWriteTable(fits, header, table, extname)) { + psError(PS_ERR_UNKNOWN, false, "Unable to write table from chip %s, cell %s to extension %s\n", + chipName, cellName, extname); + psFree(extname); + return 0; + } + + psFree(extname); + return 1; +} + + +int pmChipWriteTable(psFits *fits, const pmChip *chip, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(chip, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + int numWrite = 0; // Number of reads + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + numWrite += pmCellWriteTable(fits, cell, name); + } + + return numWrite; +} + + +int pmFPAWriteTable(psFits *fits, const pmFPA *fpa, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(fpa, 0); + PS_ASSERT_PTR_NON_NULL(fits, 0); + PS_ASSERT_STRING_NON_EMPTY(name, 0); + + int numWrite = 0; // Number of reads + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + numWrite += pmChipWriteTable(fits, chip, name); + } + + return numWrite; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPAWrite.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAWrite.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAWrite.h (revision 12167) @@ -0,0 +1,168 @@ +/* @file pmFPAWrite.h + * @brief Write FPA components to a FITS file + * + * @author Paul Price, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_WRITE_H +#define PM_FPA_WRITE_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include +#include "pmFPA.h" + +/// Write a readout incrementally +/// +/// Writes a readout to a FITS file, perhaps incrementally (if it has been read in using pmReadoutReadNext). +/// Relies on the FITS header to specify how many image planes there are, and the width and height. +bool pmReadoutWriteNext(pmReadout *readout, ///< Readout to write + psFits *fits, ///< FITS file to which to write + int z ///< Image plane to write + ); + +/// Write a cell to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU pixels if required. A blank (i.e., image-less header) is +/// written only if specifically requested. Writes the concepts to the various locations, and then the HDU to +/// the FITS file. This function should be called at the beginning of the output cell loop with blank=true in +/// order to produce the correct file structure. +bool pmCellWrite(pmCell *cell, ///< Cell to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank ///< Write a blank PHU? + ); + +/// Write a chip to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU pixels if required. A blank (i.e., image-less header) is +/// written only if specifically requested. Writes the concepts to the various locations, and then the HDU to +/// the FITS file, optionally recursing to lower levels. This function should be called at the beginning of +/// the output chip loop with blank=true and recurse=false in order to produce the correct file structure. +bool pmChipWrite(pmChip *chip, ///< Chip to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + +/// Write an FPA to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU pixels if required. A blank (i.e., image-less header) is +/// written only if specifically requested. Writes the concepts to the various locations, and then the HDU to +/// the FITS file, optionally recursing to lower levels. This function should be called at the beginning of +/// the output FPA loop with blank=true and recurse=false in order to produce the correct file structure. +bool pmFPAWrite(pmFPA *fpa, ///< FPA to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + +/// Write a cell mask to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU mask pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU mask to the FITS file. This function should be called at the beginning of the output cell loop +/// with blank=true in order to produce the correct file structure. +bool pmCellWriteMask(pmCell *cell, ///< Cell to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank ///< Write a blank PHU? + ); + +/// Write a chip mask to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU mask pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU mask to the FITS file, optionally recursing to lower levels. This function should be called at +/// the beginning of the output chip loop with blank=true and recurse=false in order to produce the correct +/// file structure. +bool pmChipWriteMask(pmChip *chip, ///< Chip to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + +/// Write an FPA mask to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU mask pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU mask to the FITS file, optionally recursing to lower levels. This function should be called at +/// the beginning of the output FPA loop with blank=true and recurse=false in order to produce the correct +/// file structure. +bool pmFPAWriteMask(pmFPA *fpa, ///< FPA to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + +/// Write a cell weight to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU weight pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU weight to the FITS file. This function should be called at the beginning of the output cell loop +/// with blank=true in order to produce the correct file structure. +bool pmCellWriteWeight(pmCell *cell, ///< Cell to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank ///< Write a blank PHU? + ); + +/// Write a chip weight to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU weight pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU weight to the FITS file, optionally recursing to lower levels. This function should be called at +/// the beginning of the output chip loop with blank=true and recurse=false in order to produce the correct +/// file structure. +bool pmChipWriteWeight(pmChip *chip, ///< Chip to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + +/// Write an FPA weight to a FITS file +/// +/// Generates CELL.TRIMSEC, CELL.BIASSEC and the HDU weight pixels if required. A blank (i.e., image-less +/// header) is written only if specifically requested. Writes the concepts to the various locations, and then +/// the HDU weight to the FITS file, optionally recursing to lower levels. This function should be called at +/// the beginning of the output FPA loop with blank=true and recurse=false in order to produce the correct +/// file structure. +bool pmFPAWriteWeight(pmFPA *fpa, ///< FPA to write + psFits *fits, ///< FITS file to which to write + psDB *db, ///< Database handle for "concepts" update + bool blank, ///< Write a blank PHU? + bool recurse ///< Recurse to lower levels? + ); + + +/// Write a FITS table from the cell's analysis metadata. +/// +/// The FITS table (a psArray of psMetadatas) from the cell's analysis metadata (under "name") is written to +/// the FITS file, at an extension specified by the name, chip name and cell name ("NAME_CHIP_CELL"). If a +/// header is present in the analysis metadata ("name.HEADER"), then it is written also. +int pmCellWriteTable(psFits *fits, ///< FITS file to which to write + const pmCell *cell, ///< Cell containing FITS table in the analysis metadata + const char *name ///< Name for the table data, and the extension name + ); + +int pmChipWriteTable(psFits *fits, ///< FITS file to which to write + const pmChip *chip, ///< Chip containing cells with tables to write + const char *name ///< Name for the table data, and the extension name + ); + +int pmFPAWriteTable(psFits *fits, ///< FITS file to which to write + const pmFPA *fpa, ///< FPA containing cells with tables to write + const char *name ///< Name for the table data, and the extension name + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.c (revision 12167) @@ -0,0 +1,228 @@ +/** @file pmFPA_JPEG.c + * + * This file contains functions to write JPEG images. + * + * @author EAM, IfA + * + * @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-01 03:15:13 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ + +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAview.h" +#include "pmFPA_JPEG.h" + + +bool pmFPAviewWriteJPEG(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAWriteJPEG (fpa, view, file, config); + return true; + } + + if (view->chip >= fpa->chips->n) { + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipWriteJPEG (chip, view, file, config); + return true; + } + + if (view->cell >= chip->cells->n) { + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellWriteJPEG (cell, view, file, config); + return true; + } + + if (view->readout >= cell->readouts->n) { + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + pmReadoutWriteJPEG (readout, view, file, config); + return true; +} + +// read in all chip-level JPEG files for this FPA +bool pmFPAWriteJPEG (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < fpa->chips->n; i++) { + + pmChip *chip = fpa->chips->data[i]; + pmChipWriteJPEG (chip, view, file, config); + } + return true; +} + +// read in all cell-level JPEG files for this chip +bool pmChipWriteJPEG (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < chip->cells->n; i++) { + + pmCell *cell = chip->cells->data[i]; + pmCellWriteJPEG (cell, view, file, config); + } + return true; +} + +// read in all readout-level JPEG files for this cell +bool pmCellWriteJPEG (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < cell->readouts->n; i++) { + + pmReadout *readout = cell->readouts->data[i]; + pmReadoutWriteJPEG (readout, view, file, config); + } + return true; +} + +// write JPEG image for readout +// note that this function will try as hard a possible to write out a jpeg. it will not fail +// just because the values are in a poor range. it is more convenient to know you are getting +// a jpeg which is weird than to fail to get the file at all. +bool pmReadoutWriteJPEG (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + bool status; + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + if (file->type != PM_FPA_FILE_JPEG) { + psError(PS_ERR_UNKNOWN, true, "warning: type mismatch"); + return false; + } + + psTrace("psModules.camera", 3, "writing jpeg for readout %zd\n", (size_t) readout); + + psMetadata *recipe = psMetadataLookupMetadata(&status, config->recipes, "PPIMAGE"); + if (!status) { + psError(PS_ERR_UNKNOWN, true, "missing recipe PPIMAGE in config data"); + return false; + } + + psMetadata *options = psMetadataLookupMetadata(&status, recipe, file->name); + if (!status) { + psError(PS_ERR_UNKNOWN, true, "missing %s options in PPIMAGE recipe", file->name); + return false; + } + + float min = 0; + float max = 0; // Minimum and maximum for stretch + float mean = 0; + float delta = 0; + + // measure the image statistics for scaling + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 0); + psStats *stats = psStatsAlloc(PS_STAT_ROBUST_MEDIAN); + stats->nSubsample = 10000; + if (!psImageBackground(stats, readout->image, NULL, 0, rng)) { + psStats *statsAlt = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + stats->nSubsample = 10000; + if (!psImageBackground(stats, readout->image, NULL, 0, rng)) { + psLogMsg("jpeg", PS_LOG_WARN, "Unable to measure statistics for image, writing blank jpeg\n"); + mean = 0; + delta = 1; + } else { + mean = statsAlt->sampleMean; + delta = 2*statsAlt->sampleStdev; + } + psFree(statsAlt); + } else { + mean = stats->robustMedian; + delta = stats->robustUQ - stats->robustLQ; + } + psFree(rng); + psFree(stats); + + char *colormapName = psMemIncrRefCounter (psMetadataLookupStr (NULL, options, "COLORMAP")); + if (!colormapName) + colormapName = psStringCopy ("-greyscale"); + char *mode = psMemIncrRefCounter (psMetadataLookupStr (NULL, options, "SCALE.MODE")); + if (!mode) + mode = psStringCopy ("RANGE"); + float fmin = psMetadataLookupF32 (&status, options, "SCALE.MIN"); + if (!status) + fmin = -3.0; + float fmax = psMetadataLookupF32 (&status, options, "SCALE.MAX"); + if (!status) + fmax = +6.0; + + if (!strcasecmp (mode, "RANGE")) { + min = mean + fmin*delta; + max = mean + fmax*delta; + } + if (!strcasecmp (mode, "FRACTION")) { + min = fmin*mean; + max = fmax*mean; + } + if (!strcasecmp (mode, "VALUE")) { + min = fmin; + max = fmax; + } + + + if (!isfinite(min) || !isfinite(max)) { + psLogMsg("jpeg", PS_LOG_WARN, "The stretch parameters are not both finite, writing blank jpeg\n"); + min = 0; + max = 1; + } + + psString name = pmFPAfileNameFromRule (file->filerule, file, view); + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + psString newName = pmConfigConvertFilename(name, config, create); + + psImageJpegColormap *map = psImageJpegColormapSet (NULL, colormapName); + if (!map) { + map = psImageJpegColormapSet (NULL, "-greyscale"); + } + + psImageJpeg (map, readout->image, newName, min, max); + + psFree(name); + psFree(newName); + + psFree(map); + psFree(colormapName); + psFree(mode); + return true; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA_JPEG.h (revision 12167) @@ -0,0 +1,24 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_JPEG_H +#define PM_FPA_JPEG_H + +/// @addtogroup Camera Camera Layout +/// @{ + +bool pmFPAviewWriteJPEG (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAWriteJPEG (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipWriteJPEG (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellWriteJPEG (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutWriteJPEG (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.c (revision 12167) @@ -0,0 +1,174 @@ +/** @file pmFPA_MANAPLOT.c + * + * This file contains functions to write MANAPLOT images. + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-26 00:05:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ + +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAview.h" +#include "pmFPA_MANAPLOT.h" + + +bool pmFPAviewWriteMANAPLOT(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAWriteMANAPLOT (fpa, view, file, config); + return true; + } + + if (view->chip >= fpa->chips->n) { + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipWriteMANAPLOT (chip, view, file, config); + return true; + } + + if (view->cell >= chip->cells->n) { + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellWriteMANAPLOT (cell, view, file, config); + return true; + } + + if (view->readout >= cell->readouts->n) { + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + pmReadoutWriteMANAPLOT (readout, view, file, config); + return true; +} + +// read in all chip-level MANAPLOT files for this FPA +bool pmFPAWriteMANAPLOT (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < fpa->chips->n; i++) { + + pmChip *chip = fpa->chips->data[i]; + pmChipWriteMANAPLOT (chip, view, file, config); + } + return true; +} + +// read in all cell-level MANAPLOT files for this chip +bool pmChipWriteMANAPLOT (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < chip->cells->n; i++) { + + pmCell *cell = chip->cells->data[i]; + pmCellWriteMANAPLOT (cell, view, file, config); + } + return true; +} + +// read in all readout-level MANAPLOT files for this cell +bool pmCellWriteMANAPLOT (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + for (int i = 0; i < cell->readouts->n; i++) { + + pmReadout *readout = cell->readouts->data[i]; + pmReadoutWriteMANAPLOT (readout, view, file, config); + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmReadoutWriteMANAPLOT (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + if (file->type != PM_FPA_FILE_MANAPLOT) { + psError(PS_ERR_UNKNOWN, true, "warning: type mismatch"); + return false; + } + + // XXX does not have to be a mana script... + // this function will call a mana script of the form: + // scriptname (input) (output) + // scriptname : extname + // input : filextra + // output : filerule + + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + + psString tmpName; + tmpName = pmFPAfileNameFromRule (file->filextra, file, view); + psString input = pmConfigConvertFilename (tmpName, config, create); + psFree (tmpName); + + tmpName = pmFPAfileNameFromRule (file->filerule, file, view); + psString output = pmConfigConvertFilename (tmpName, config, create); + psFree (tmpName); + + tmpName = pmFPAfileNameFromRule (file->extname, file, view); + psString script = pmConfigConvertFilename (tmpName, config, create); + psFree (tmpName); + + psString line = NULL; + psStringAppend (&line, "%s %s %s", script, input, output); + + // capture the stdout and stderr? + // XXX use psPipe instead? + int status = system (line); + if (status == -1) { + psError(PS_ERR_UNKNOWN, true, "fork failure: %s", script); + return false; + } + if (WEXITSTATUS(status) != 0) { + psError(PS_ERR_UNKNOWN, true, "error running: %s", script); + return false; + } + + psFree(line); + psFree(input); + psFree(output); + psFree(script); + + return true; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPA_MANAPLOT.h (revision 12167) @@ -0,0 +1,24 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_MANAPLOT_H +#define PM_FPA_MANAPLOT_H + +/// @addtogroup Camera Camera Layout +/// @{ + +bool pmFPAviewWriteMANAPLOT (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAWriteMANAPLOT (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipWriteMANAPLOT (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellWriteMANAPLOT (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutWriteMANAPLOT (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAfile.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfile.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfile.c (revision 12167) @@ -0,0 +1,415 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConfig.h" +#include "pmHDU.h" +#include "pmFPA.h" +// #include "pmFPAMaskWeight.h" +#include "pmFPAConstruct.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" +#include "pmFPACopy.h" +#include "pmConceptsPhotcode.h" +// #include "pmFPAWrite.h" +// #include "pmPeaks.h" +// #include "pmMoments.h" +// #include "pmModel.h" +// #include "pmSource.h" +// #include "pmSourceIO.h" +// #include "pmGrowthCurve.h" +// #include "pmPSF.h" +// #include "pmPSF_IO.h" +// #include "pmFPA_JPEG.h" + +static void pmFPAfileFree(pmFPAfile *file) +{ + if (!file) { + return; + } + + psTrace ("pmFPAfileFree", 5, "freeing %s\n", file->name); + psFree (file->fpa); + psFree (file->readout); + psFree (file->names); + + psFree (file->camera); + psFree (file->format); + psFree (file->name); + + if (file->fits != NULL) { + psFitsClose (file->fits); + } + + psFree (file->filerule); + psFree (file->filextra); + psFree (file->extrule); + psFree (file->extxtra); + + psFree (file->filename); + psFree (file->extname); + + return; +} + +pmFPAfile *pmFPAfileAlloc() +{ + pmFPAfile *file = psAlloc(sizeof(pmFPAfile)); + psMemSetDeallocator(file, (psFreeFunc) pmFPAfileFree); + + file->phu = false; + file->readout = NULL; + file->header = NULL; + + file->fileLevel = PM_FPA_LEVEL_NONE; + file->dataLevel = PM_FPA_LEVEL_NONE; + file->freeLevel = PM_FPA_LEVEL_NONE; + file->mosaicLevel = PM_FPA_LEVEL_NONE; + + file->fpa = NULL; + file->fits = NULL; + file->names = psMetadataAlloc(); + + file->camera = NULL; + file->format = NULL; + file->name = NULL; + + file->filerule = NULL; + file->filextra = NULL; + file->extrule = NULL; + file->extxtra = NULL; + + file->filename = NULL; + file->extname = NULL; + + file->type = PM_FPA_FILE_NONE; + file->mode = PM_FPA_MODE_NONE; + file->state = PM_FPA_STATE_CLOSED; + + file->xBin = 1; + file->yBin = 1; + file->src = NULL; + + file->save = false; + + return file; +} + +// select the readout from the named pmFPAfile; if the named file does not exist, +pmReadout *pmFPAfileThisReadout (psMetadata *files, const pmFPAview *view, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(name, false); + PS_ASSERT_INT_POSITIVE(strlen(name), false); + + bool status; + + pmFPAfile *file = psMetadataLookupPtr (&status, files, name); + if (file == NULL) { + return NULL; + } + + // internal files have the readout as a separate element: + if (file->mode == PM_FPA_MODE_INTERNAL) { + return file->readout; + } + + pmReadout *readout = pmFPAviewThisReadout (view, file->fpa); + return readout; +} + +// select the cell from the named pmFPAfile; if the named file does not exist, +pmCell *pmFPAfileThisCell (psMetadata *files, const pmFPAview *view, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(name, false); + PS_ASSERT_INT_POSITIVE(strlen(name), false); + + bool status; + + pmFPAfile *file = psMetadataLookupPtr (&status, files, name); + if (file == NULL) { + return NULL; + } + + // internal files have the readout as a separate element: + if (file->mode == PM_FPA_MODE_INTERNAL) { + return NULL; + } + + pmCell *cell = pmFPAviewThisCell(view, file->fpa); + return cell; +} + +// select the readout from the named pmFPAfile; if the named file does not exist, +pmChip *pmFPAfileThisChip (psMetadata *files, const pmFPAview *view, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(name, false); + PS_ASSERT_INT_POSITIVE(strlen(name), false); + + bool status; + + pmFPAfile *file = psMetadataLookupPtr (&status, files, name); + if (file == NULL) { + return NULL; + } + + // internal files have the readout as a separate element: + if (file->mode == PM_FPA_MODE_INTERNAL) { + return NULL; + } + + pmChip *chip = pmFPAviewThisChip (view, file->fpa); + return chip; +} + +// select the rule from the camera configuration, perform substitutions as needed +char *pmFPAfileNameFromRule (char *rule, pmFPAfile *file, const pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(rule, NULL); + PS_ASSERT_INT_POSITIVE(strlen(rule), NULL); + PS_ASSERT_PTR_NON_NULL(file, NULL); + PS_ASSERT_PTR_NON_NULL(view, NULL); + + char *newName = NULL; // destination for resulting name + + newName = psStringCopy (rule); + + if (strstr (newName, "{OUTPUT}") != NULL) { + char *name = psMetadataLookupStr (NULL, file->names, "OUTPUT"); + if (name != NULL) { + psStringSubstitute(&newName, name, "{OUTPUT}"); + } + } + if (strstr (newName, "{CHIP.NAME}") != NULL) { + pmChip *chip = pmFPAviewThisChip (view, file->fpa); + if (chip != NULL) { + char *name = psMetadataLookupStr (NULL, chip->concepts, "CHIP.NAME"); + if (name != NULL) { + psStringSubstitute(&newName, name, "{CHIP.NAME}"); + } + } + } + if (strstr (newName, "{CHIP.N}") != NULL) { + char *name = NULL; + if (view->chip < 0) { + psStringAppend (&name, "XX"); + } else { + psStringAppend (&name, "%02d", view->chip); + } + psStringSubstitute(&newName, name, "{CHIP.N}"); + psFree (name); + } + if (strstr (newName, "{CELL.NAME}") != NULL) { + pmCell *cell = pmFPAviewThisCell (view, file->fpa); + if (cell != NULL) { + char *name = psMetadataLookupStr (NULL, cell->concepts, "CELL.NAME"); + if (name != NULL) { + psStringSubstitute(&newName, name, "{CELL.NAME}"); + } + } + } + if (strstr (newName, "{CELL.N}") != NULL) { + char *name = NULL; + if (view->cell < 0) { + psStringAppend (&name, "XX"); + } else { + psStringAppend (&name, "%02d", view->cell); + } + psStringSubstitute(&newName, name, "{CELL.N}"); + } + if (strstr (newName, "{EXTNAME}") != NULL) { + pmHDU *hdu = pmFPAviewThisHDU (view, file->fpa); + if (hdu->extname && *hdu->extname) { + psStringSubstitute(&newName, hdu->extname, "{EXTNAME}"); + } + } + if (strstr (newName, "{FILTER}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.FILTER"); + if (name && *name) { + psStringSubstitute(&newName, name, "{FILTER}"); + } + } + } + if (strstr (newName, "{FILTER.ID}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.FILTERID"); + if (name && *name) { + psStringSubstitute(&newName, name, "{FILTER.ID}"); + } + } + } + if (strstr (newName, "{CAMERA}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.INSTRUMENT"); + if (name && *name) { + psStringSubstitute(&newName, name, "{CAMERA}"); + } + } + } + if (strstr (newName, "{INSTRUMENT}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.INSTRUMENT"); + if (name && *name) { + psStringSubstitute(&newName, name, "{INSTRUMENT}"); + } + } + } + if (strstr (newName, "{DETECTOR}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.DETECTOR"); + if (name && *name) { + psStringSubstitute(&newName, name, "{DETECTOR}"); + } + } + } + if (strstr (newName, "{TELESCOPE}") != NULL) { + if (file->fpa != NULL) { + char *name = psMetadataLookupStr (NULL, file->fpa->concepts, "FPA.TELESCOPE"); + if (name && *name) { + psStringSubstitute(&newName, name, "{TELESCOPE}"); + } + } + } + return newName; +} + +// given an already-opened fits file, write the components corresponding +// to the specified view +bool pmFPAfileCopyView (pmFPA *out, pmFPA *in, const pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(out, false); + PS_ASSERT_PTR_NON_NULL(in, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + // pmFPAWrite takes care of all PHUs as needed + if (view->chip == -1) { + pmFPACopy (out, in); + return true; + } + if (view->chip >= in->chips->n) { + psError(PS_ERR_IO, true, "Requested chip == %d >= in->chips->n == %ld", view->chip, in->chips->n); + return false; + } + pmChip *inChip = in->chips->data[view->chip]; + pmChip *outChip = out->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipCopy (outChip, inChip); + return true; + } + if (view->cell >= inChip->cells->n) { + psError(PS_ERR_IO, true, "Requested cell == %d>= inChip->cells->n == %ld", + view->cell, inChip->cells->n); + return false; + } + pmCell *inCell = inChip->cells->data[view->cell]; + pmCell *outCell = outChip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellCopy (outCell, inCell); + return true; + } + psError(PS_ERR_UNKNOWN, true, "Returning false"); + return false; + + // XXX add readout / segment equivalents +} + +// given an already-opened fits file, write the components corresponding +// to the specified view +bool pmFPAfileCopyStructureView (pmFPA *out, pmFPA *in, int xBin, int yBin, const pmFPAview *view) +{ + bool status; + PS_ASSERT_PTR_NON_NULL(out, false); + PS_ASSERT_PTR_NON_NULL(in, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + // pmFPAWrite takes care of all PHUs as needed + if ((view->chip == -1) || in->hdu) { + status = pmFPACopyStructure (out, in, xBin, yBin); + return status; + } + if (view->chip >= in->chips->n) { + psError(PS_ERR_IO, true, "Requested chip == %d >= in->chips->n == %ld", view->chip, in->chips->n); + return false; + } + pmChip *inChip = in->chips->data[view->chip]; + pmChip *outChip = out->chips->data[view->chip]; + + if ((view->cell == -1) || inChip->hdu) { + status = pmChipCopyStructure (outChip, inChip, xBin, yBin); + return status; + } + if (view->cell >= inChip->cells->n) { + psError(PS_ERR_IO, true, "Requested cell == %d>= inChip->cells->n == %ld", + view->cell, inChip->cells->n); + return false; + } + pmCell *inCell = inChip->cells->data[view->cell]; + pmCell *outCell = outChip->cells->data[view->cell]; + + if ((view->readout == -1) || inCell->hdu) { + status = pmCellCopyStructure (outCell, inCell, xBin, yBin); + return status; + } + psError(PS_ERR_UNKNOWN, true, "Returning false"); + return false; +} + + +pmFPAfileType pmFPAfileTypeFromString(const char *type) +{ + PS_ASSERT_STRING_NON_EMPTY(type, PM_FPA_FILE_NONE); + + if (!strcasecmp (type, "SX")) { + return PM_FPA_FILE_SX; + } + if (!strcasecmp (type, "OBJ")) { + return PM_FPA_FILE_OBJ; + } + if (!strcasecmp (type, "CMP")) { + return PM_FPA_FILE_CMP; + } + if (!strcasecmp (type, "CMF")) { + return PM_FPA_FILE_CMF; + } + if (!strcasecmp (type, "RAW")) { + return PM_FPA_FILE_RAW; + } + if (!strcasecmp (type, "IMAGE")) { + return PM_FPA_FILE_IMAGE; + } + if (!strcasecmp (type, "PSF")) { + return PM_FPA_FILE_PSF; + } + if (!strcasecmp (type, "JPEG")) { + return PM_FPA_FILE_JPEG; + } + if (!strcasecmp (type, "KAPA")) { + return PM_FPA_FILE_KAPA; + } + if (!strcasecmp (type, "MASK")) { + return PM_FPA_FILE_MASK; + } + if (!strcasecmp (type, "WEIGHT")) { + return PM_FPA_FILE_WEIGHT; + } + if (!strcasecmp (type, "FRINGE")) { + return PM_FPA_FILE_FRINGE; + } + if (!strcasecmp (type, "HEADER")) { + return PM_FPA_FILE_HEADER; + } + + return PM_FPA_FILE_NONE; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPAfile.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfile.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfile.h (revision 12167) @@ -0,0 +1,129 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-15 00:34:00 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_FILE_H +#define PM_FPA_FILE_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pslib.h" +#include "pmConfig.h" +#include "pmFPA.h" +#include "pmFPAview.h" + +typedef enum { + PM_FPA_BEFORE, + PM_FPA_AFTER, +} pmFPAfilePlace; + +typedef enum { + PM_FPA_FILE_NONE, + PM_FPA_FILE_SX, + PM_FPA_FILE_OBJ, + PM_FPA_FILE_CMP, + PM_FPA_FILE_CMF, + PM_FPA_FILE_RAW, + PM_FPA_FILE_IMAGE, + PM_FPA_FILE_PSF, + PM_FPA_FILE_JPEG, + PM_FPA_FILE_KAPA, + PM_FPA_FILE_MANAPLOT, + PM_FPA_FILE_MASK, + PM_FPA_FILE_WEIGHT, + PM_FPA_FILE_FRINGE, + PM_FPA_FILE_HEADER, +} pmFPAfileType; + +typedef enum { + PM_FPA_MODE_NONE, + PM_FPA_MODE_READ, + PM_FPA_MODE_WRITE, + PM_FPA_MODE_INTERNAL, + PM_FPA_MODE_REFERENCE, +} pmFPAfileMode; + +typedef enum { + PM_FPA_STATE_OPEN = 0x01, + PM_FPA_STATE_CLOSED = 0x02, + PM_FPA_STATE_INACTIVE = 0x04, +} pmFPAfileState; + +typedef struct +{ + pmFPAfileMode mode; // is this file read, written, or only used internally? + pmFPAfileType type; // what type of data is read from / written to disk? + pmFPAfileState state; // have we opened the file, etc? + + // Desired levels, set by the user + pmFPALevel fileLevel; // what level in the FPA hierarchy represents a unique file? + pmFPALevel dataLevel; // at what level do we read/write the data segment? + pmFPALevel freeLevel; // at what level do we free the data segment? + pmFPALevel mosaicLevel; // at what level is the mosaic? + + pmFPA *fpa; // for I/O files, we carry a pointer to the complete fpa + psFits *fits; // for I/O files of fits type (IMAGE, CMP, CMF), we carry a file handle + + bool phu; // have we written a PHU for this file? + psMetadata *header; // pointer (view) to the current hdu header + + pmReadout *readout; // for internal files, we only carry a single readout + + psMetadata *names; // filenames supplied by the cmdline or detdb are saved here + + char *filerule; // rule for constructing a filename when needed + char *filextra; // additional information used to define filenames (context dependent) + char *extrule; // rule for constructing an extension name when needed + char *extxtra; // additional information used to define extension names (context dependent) + + char *name; // the name of the rule (useful for debugging / tracing) + char *filename; // the current name of an active file + char *extname; // the current name of an active file extension + + bool save; + + // the following elements are used for WRITE-mode IMAGE-type pmFPAfiles to inform + // the creation of a new image based on an existing image + pmFPA *src; // if an output FPA, inherit from this FPA + int xBin; // desired binning in x direction + int yBin; // desired binning in y direction + + psMetadata *camera; + psMetadata *format; +} +pmFPAfile; + +// allocate an empty pmFPAfile structure +pmFPAfile *pmFPAfileAlloc (); + +// select the readout from the named pmFPAfile; if the named file does not exist, +pmReadout *pmFPAfileThisReadout (psMetadata *files, const pmFPAview *view, const char *name); + +// select the cell from the named pmFPAfile; if the named file does not exist, +pmCell *pmFPAfileThisCell (psMetadata *files, const pmFPAview *view, const char *name); + +// select the chip from the named pmFPAfile; if the named file does not exist, +pmChip *pmFPAfileThisChip (psMetadata *files, const pmFPAview *view, const char *name); + +// add the specified filename info (value) to the files of the given mode using the given reference name +bool pmFPAfileAddFileNames (psMetadata *files, char *name, char *value, int mode); + +// convert the rule to a name based on the current view +char *pmFPAfileNameFromRule (char *rule, pmFPAfile *file, const pmFPAview *view); + +bool pmFPAfileCopyView (pmFPA *out, pmFPA *in, const pmFPAview *view); + +bool pmFPAfileCopyStructureView (pmFPA *out, pmFPA *in, int xBin, int yBin, const pmFPAview *view); + +// Return the file type enum from a string +pmFPAfileType pmFPAfileTypeFromString(const char *type); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.c (revision 12167) @@ -0,0 +1,1159 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConfig.h" +#include "pmConcepts.h" +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmFPAConstruct.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" +#include "pmFPAfile.h" +#include "pmFPACopy.h" +#include "pmFPARead.h" +#include "pmFPAWrite.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmSourceIO.h" +#include "pmGrowthCurve.h" +#include "pmPSF.h" +#include "pmPSF_IO.h" +#include "pmFPA_JPEG.h" +#include "pmDetrendDB.h" +#include "pmConceptsPhotcode.h" + +// define an input-type pmFPAfile, bind to the optional fpa if supplied +pmFPAfile *pmFPAfileDefineInput(pmConfig *config, pmFPA *fpa, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->files, NULL); + PS_ASSERT_PTR_NON_NULL(config->camera, NULL); + PS_ASSERT_STRING_NON_EMPTY(name, NULL); + + bool status; + char *type; + + // select the FILERULES from config->camera + psMetadata *filerules = psMetadataLookupPtr (&status, config->camera, "FILERULES"); + if (filerules == NULL) { + psError(PS_ERR_IO, true, "Can't find FILERULES in the CAMERA configuration!"); + return NULL; + } + + // select the name from the FILERULES + // check for alias name (type == STR, name is aliased name) + const char *realname = psMetadataLookupStr (&status, filerules, name); + if (!realname || strlen(realname) == 0) { + realname = name; + } + + psMetadata *data = psMetadataLookupPtr (&status, filerules, realname); + if (data == NULL) { + psError(PS_ERR_IO, true, "Can't find file concept %s!", name); + return NULL; + } + + pmFPAfile *file = pmFPAfileAlloc (); + + // save the name of this pmFPAfile + file->name = psStringCopy (name); + + file->filerule = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "FILENAME.RULE")); + file->filextra = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "FILENAME.XTRA")); + file->extrule = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "EXTNAME.RULE")); + file->extxtra = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "EXTNAME.XTRA")); + + type = psMetadataLookupStr (&status, data, "FILE.TYPE"); + file->type = pmFPAfileTypeFromString(type); + if (file->type == PM_FPA_FILE_NONE) { + psError(PS_ERR_IO, true, "FILE.TYPE is not defined for %s\n", name); + return NULL; + } + + file->mode = PM_FPA_MODE_READ; + file->fileLevel = PM_FPA_LEVEL_NONE; // the fileLevel depends on the input data + + file->dataLevel = pmFPALevelFromName(psMetadataLookupStr (&status, data, "DATA.LEVEL")); + if (file->dataLevel == PM_FPA_LEVEL_NONE) { + psError(PS_ERR_IO, true, "DATA.LEVEL is not set for %s\n", name); + return NULL; + } + // default is to free the data after use (after written out) + // this can be overridden for pmFPAfiles used as carriers as well + file->freeLevel = file->dataLevel; + + if (fpa != NULL) { + file->fpa = psMemIncrRefCounter(fpa); + file->camera = psMemIncrRefCounter((psMetadata *)fpa->camera); + } + + // XXX ppImage and similar require the added file to be unique + // XXX ppFocus wants to override the selection with the new selection + // XXX require programs like ppFocus to remove existing files by hand + if (!psMetadataAddPtr (config->files, PS_LIST_TAIL, name, PS_DATA_UNKNOWN, "", file)) { + psError (PS_ERR_IO, false, "could not add %s to config files", name); + return NULL; + } + psFree (file); + return (file); +} + +// Check the various levels for file operations to make sure that they are suitable based on the format +static void adjustLevels(pmFPAfile *file, // File for which to adjust levels + const psMetadata *format // Format to use to adjust levels + ) +{ + assert(file); + assert(format); + + + return; +} + +// define a pmFPAfile, bind to the optional fpa if supplied +pmFPAfile *pmFPAfileDefineOutput(pmConfig *config, pmFPA *fpa, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->files, NULL); + PS_ASSERT_PTR_NON_NULL(config->camera, NULL); + PS_ASSERT_STRING_NON_EMPTY(name, NULL); + + bool status; + + // select the FILERULES from the camera config + psMetadata *filerules = psMetadataLookupPtr (&status, config->camera, "FILERULES"); + if (filerules == NULL) { + psError(PS_ERR_IO, true, "Can't find FILERULES in the CAMERA configuration!"); + return NULL; + } + + // select the name from the FILERULES + // check for alias name (type == STR, name is aliased name) + const char *realname = psMetadataLookupStr (&status, filerules, name); + if (!realname || strlen(realname) == 0) { + realname = name; + } + + psMetadata *data = psMetadataLookupPtr (&status, filerules, realname); + if (data == NULL) { + psError(PS_ERR_IO, true, "Can't find file concept %s!", name); + return NULL; + } + + pmFPAfile *file = pmFPAfileAlloc (); + + // save the name of this pmFPAfile + file->name = psStringCopy (name); + + file->filerule = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "FILENAME.RULE")); + file->filextra = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "FILENAME.XTRA")); + file->extrule = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "EXTNAME.RULE")); + file->extxtra = psMemIncrRefCounter(psMetadataLookupStr (&status, data, "EXTNAME.XTRA")); + + const char *type = psMetadataLookupStr (&status, data, "FILE.TYPE"); + file->type = pmFPAfileTypeFromString(type); + if (file->type == PM_FPA_FILE_NONE) { + psError(PS_ERR_IO, true, "FILE.TYPE is not defined for %s\n", name); + psFree(file); + return NULL; + } + + file->mode = PM_FPA_MODE_WRITE; + file->save = false; + char *save = psMetadataLookupStr (&status, data, "FILE.SAVE"); + if (save != NULL) { + if (!strcasecmp (save, "TRUE")) { + file->save = true; + } else if (!strcasecmp (save, "FALSE")) { + file->save = false; + } else { + psError(PS_ERR_IO, true, "Illegal value \"%s\" for FILE.SAVE for %s", save, name); + psFree(file); + return NULL; + } + } + + psMetadata *camera; // Camera to use + if (fpa && fpa->camera) { + camera = (psMetadata*)fpa->camera; // Casting away const, so I can put it in the file + } else { + camera = config->camera; + } + file->camera = psMemIncrRefCounter(camera); + + // select the format list from the selected camera + const char *formatName = psMetadataLookupStr (&status, data, "FILE.FORMAT"); + if (!formatName || strcmp(formatName, "NONE") == 0) { + // Try to get by with the default + formatName = config->formatName; + } + psMetadata *formats = psMetadataLookupMetadata(&status, file->camera, "FORMATS"); // List of formats + psMetadata *format = psMetadataLookupMetadata(&status, formats, formatName); // Camera format to use + if (!format) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Unable to find format %s for file %s.\n", + formatName, file->name); + psFree(file); + return NULL; + } + file->format = psMemIncrRefCounter(format); + + file->fpa = psMemIncrRefCounter(fpa); + + file->fileLevel = pmFPAPHULevel(format); + if (file->fileLevel == PM_FPA_LEVEL_NONE) { + psError(PS_ERR_IO, true, "Unable to determine file level for %s\n", name); + psFree(file); + return NULL; + } + + file->dataLevel = pmFPALevelFromName(psMetadataLookupStr(&status, data, "DATA.LEVEL")); + if (file->dataLevel == PM_FPA_LEVEL_NONE) { + psError(PS_ERR_IO, true, "DATA.LEVEL is not set for %s\n", name); + psFree(file); + return NULL; + } + // default is to free the data after use (after written out) + // this can be overridden for pmFPAfiles used as carriers as well + file->freeLevel = file->dataLevel; + + pmFPALevel extLevel = pmFPAExtensionsLevel(format); // Level for extensions + if (extLevel != PM_FPA_LEVEL_NONE) { + if (extLevel < file->dataLevel) { + psWarning("Level for extensions is higher than desired data level --- adjusting.\n"); + file->dataLevel = extLevel; + } + if (extLevel < file->freeLevel) { + psWarning("Level for extensions is higher than desired free level --- adjusting.\n"); + file->freeLevel = extLevel; + } + } + adjustLevels(file, format); + + + // add argument-supplied OUTPUT name to this file + char *outname = psMetadataLookupStr(&status, config->arguments, "OUTPUT"); + psMetadataAddStr(file->names, PS_LIST_TAIL, "OUTPUT", PS_META_NO_REPLACE, "", outname); + + // place the resulting file in the config system + psMetadataAddPtr (config->files, PS_LIST_TAIL, name, PS_DATA_UNKNOWN, "", file); + psFree (file); // we free this copy of file, but 'files' still has a copy + return (file); // the returned value is a view into the version on 'files' +} + + +// search for argname on the config->argument list +// construct an FPA based on the files in this list (must represent a single FPA) +// built the association between the FPA elements (CHIP/CELL) and the files +// define the pmFPAfile filename and bind it to this FPA +// save the pmFPAfile on config->files +// return the pmFPAfile (a view to the one saved on config->files) +pmFPAfile *pmFPAfileDefineFromArgs (bool *found, pmConfig *config, const char *filename, const char *argname) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_STRING_NON_EMPTY(argname, NULL); + + bool status; + pmFPA *fpa = NULL; + psFits *fits = NULL; + pmFPAfile *file = NULL; + psMetadata *phu = NULL; + psMetadata *format = NULL; + + if (found && *found) + return NULL; + + // we search the argument data for the named fileset (argname) + psArray *infiles = psMetadataLookupPtr(&status, config->arguments, argname); + if (!status) { + return NULL; + } + if (infiles->n < 1) { + psError(PS_ERR_IO, false, "Found n == %ld files in %s in arguments\n", infiles->n, argname); + return NULL; + } + + // this function is implicitly an INPUT operation: do not create the file + psString realName = pmConfigConvertFilename (infiles->data[0], config, false); + if (!realName) { + psError(PS_ERR_IO, false, "Failed to convert file name %s\n", (char *) infiles->data[0]); + return NULL; + } + + // load the header of the first image + fits = psFitsOpen (realName, "r"); + if (!fits) { + psError(PS_ERR_IO, false, "Failed to open file %s\n", realName); + psFree (realName); + return NULL; + } + phu = psFitsReadHeader (NULL, fits); + if (!phu) { + psError(PS_ERR_IO, false, "Failed to read file header %s\n", realName); + psFree (realName); + return NULL; + } + psFitsClose(fits); + + // determine the current format from the header + // determine camera if not specified already + format = pmConfigCameraFormatFromHeader (config, phu); + if (!format) { + psError(PS_ERR_IO, false, "Failed to read CCD format from %s\n", realName); + psFree(phu); + psFree (realName); + return NULL; + } + + // build the template fpa, set up the basic view + fpa = pmFPAConstruct (config->camera); + if (!fpa) { + psError(PS_ERR_IO, false, "Failed to construct FPA from %s", realName); + psFree (realName); + return NULL; + } + psFree (realName); + + // load the given filerule (from config->camera) and bind it to the fpa + // the returned file is just a view to the entry on config->files + file = pmFPAfileDefineInput (config, fpa, filename); + if (!file) { + psError(PS_ERR_IO, false, "file %s not defined\n", filename); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + psFree (format); + file->format = psMemIncrRefCounter(format); + + // adjust the rules to identify these files in the file->names data + psFree (file->filerule); + psFree (file->filextra); + file->filerule = psStringCopy ("@FILES"); + file->filextra = psStringCopy ("{CHIP.NAME}.{CELL.NAME}"); + + // find the matching fileLevel + psMetadata *filemenu = psMetadataLookupPtr (&status, format, "FILE"); + if (!filemenu) { + psError (PS_ERR_IO, true, "missing FILE in FORMAT"); + return NULL; + } + char *levelName = psMetadataLookupStr (&status, filemenu, "PHU"); + if (!levelName) { + psError (PS_ERR_IO, true, "missing PHU in FILE in FORMAT"); + return NULL; + } + file->fileLevel = pmFPALevelFromName (levelName); + if (file->fileLevel == PM_FPA_LEVEL_NONE) { + psError (PS_ERR_IO, true, "unknown level"); + return NULL; + } + + // examine the list of input files and validate their cameras + // associated each filename with an element of the FPA + // save the association on file->names + for (int i = 0; i < infiles->n; i++) { + if (i > 0) { + // this function is implicitly an INPUT operation: do not create the file + psString realName = pmConfigConvertFilename (infiles->data[i], config, false); + if (!realName) { + psError(PS_ERR_IO, false, "Failed to convert file name %s", (char *) infiles->data[i]); + return NULL; + } + fits = psFitsOpen (realName, "r"); + if (!fits) { + psError(PS_ERR_IO, false, "Failed to open file %s\n", realName); + psFree (realName); + return NULL; + } + phu = psFitsReadHeader (NULL, fits); + if (!phu) { + psError(PS_ERR_IO, false, "Failed to read file header %s", realName); + psFree (realName); + psFitsClose (fits); + return NULL; + } + bool valid = false; + if (!pmConfigValidateCameraFormat (&valid, format, phu)) { + psError (PS_ERR_UNKNOWN, false, "Error in config scripts\n"); + psFree (realName); + psFitsClose (fits); + return NULL; + } + if (!valid) { + psError(PS_ERR_IO, false, "file %s is not from the required camera", realName); + psFree (realName); + psFitsClose (fits); + return NULL; + } + psFree(realName); + psFitsClose (fits); + } + + // set the view to the corresponding entry for this phu + pmFPAview *view = pmFPAAddSourceFromHeader (fpa, phu, format); + if (!view) { + psError(PS_ERR_IO, false, "Unable to determine source for %s", file->name); + psFree(phu); + psFree (fpa); + psFree (format); + return NULL; + } + + // associate the filename with the FPA element + char *name = pmFPAfileNameFromRule (file->filextra, file, view); + + // save the name association in the pmFPAfile structure + psMetadataAddStr (file->names, PS_LIST_TAIL, name, 0, "", infiles->data[i]); + + psFree (view); + psFree (name); + psFree (phu); + } + psFree (fpa); + if (found) + *found = true; + return file; +} + +// search for argname on the config->argument list +// construct an FPA based on the files in this list (must represent a single FPA) +// built the association between the FPA elements (CHIP/CELL) and the files +// define the pmFPAfile filename and bind it to this FPA +// save the pmFPAfile on config->files +// return the pmFPAfile (a view to the one saved on config->files) +pmFPAfile *pmFPAfileBindFromArgs (bool *found, pmFPAfile *input, pmConfig *config, const char *filename, const char *argname) +{ + PS_ASSERT_PTR_NON_NULL(input, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_STRING_NON_EMPTY(argname, NULL); + + bool status; + psFits *fits = NULL; + pmFPAfile *file = NULL; + psMetadata *phu = NULL; + + if (found && *found) + return NULL; + + // we search the argument data for the named fileset (argname) + psArray *infiles = psMetadataLookupPtr(&status, config->arguments, argname); + if (!status) { + // this is not an error: this just means no matching argument was supplied + return NULL; + } + if (infiles->n < 1) { + psError(PS_ERR_IO, false, "Found n == %ld files in %s in arguments\n", infiles->n, argname); + return NULL; + } + + // load the given filerule (from config->camera) and bind it to the fpa + // the returned file is just a view to the entry on config->files + file = pmFPAfileDefineInput (config, input->fpa, filename); + if (!file) { + psError(PS_ERR_IO, false, "file %s not defined\n", filename); + psFree(phu); + return NULL; + } + // XXX temporary hack : force PSF input onto filename + // XXX EAM : I need to define a PSF container which specifies the chip/cell element + // XXX we could use the flat metadata style IF we restrict it to SIMPLE cameras + // XXX (ie, one readout per cell, one cell per chip, one chip per fpa) + if (file->type == PM_FPA_FILE_PSF) { + file->filerule = psStringCopy (infiles->data[0]); + return file; + } + + // set derived values + file->fileLevel = input->fileLevel; + psFree (file->format); + file->format = psMemIncrRefCounter(input->format); + + // define the rule to identify these files in the file->names data + psFree (file->filerule); + psFree (file->filextra); + file->filerule = psStringCopy ("@FILES"); + file->filextra = psStringCopy ("{CHIP.NAME}.{CELL.NAME}"); + + // examine the list of input files and validate their cameras + // associated each filename with an element of the FPA + // save the association on file->names + for (int i = 0; i < infiles->n; i++) { + // this function is implicitly an INPUT operation: do not create the file + psString realName = pmConfigConvertFilename (infiles->data[i], config, false); + if (!realName) { + psError(PS_ERR_IO, false, "Failed to convert file name %s", (char *) infiles->data[i]); + return NULL; + } + fits = psFitsOpen (realName, "r"); + if (!fits) { + psError(PS_ERR_IO, false, "Failed to open file %s\n", realName); + psFree (realName); + return NULL; + } + phu = psFitsReadHeader (NULL, fits); + if (!phu) { + psError(PS_ERR_IO, false, "Failed to read file header %s", realName); + psFree (realName); + psFitsClose (fits); + return NULL; + } + bool valid = false; + if (!pmConfigValidateCameraFormat (&valid, input->format, phu)) { + psError (PS_ERR_UNKNOWN, false, "Error in config scripts\n"); + psFree (realName); + psFitsClose (fits); + return NULL; + } + if (!valid) { + psError(PS_ERR_IO, false, "specified data file %s does not match format of supplied INPUT\n", realName); + psFree (realName); + psFitsClose (fits); + return NULL; + } + psFree(realName); + psFitsClose (fits); + + // set the view to the corresponding entry for this phu + pmFPAview *view = pmFPAIdentifySourceFromHeader (input->fpa, phu, input->format); + if (!view) { + psError(PS_ERR_IO, false, "Unable to determine source for %s", file->name); + psFree(phu); + return NULL; + } + + // associate the filename with the FPA element + char *name = pmFPAfileNameFromRule (file->filextra, file, view); + + // save the name association in the pmFPAfile structure + psMetadataAddStr (file->names, PS_LIST_TAIL, name, 0, "", infiles->data[i]); + + psFree (view); + psFree (name); + psFree (phu); + } + if (found) + *found = true; + return file; +} + +// search for argname on the config->argument list +// construct an FPA based on the files in this list (each represents the same FPA) +// built the association between the FPA elements (CHIP/CELL) and the files +// define the pmFPAfile filenames and bind them to the FPAs +// save the pmFPAfiles on config->files +// return the pmFPAfiles (a view to the one saved on config->files) +pmFPAfile *pmFPAfileDefineSingleFromArgs (bool *found, pmConfig *config, const char *filename, + const char *argname, int entry) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_STRING_NON_EMPTY(argname, NULL); + + bool status; + pmFPA *fpa = NULL; + psFits *fits = NULL; + pmFPAfile *file = NULL; + psMetadata *phu = NULL; + psMetadata *format = NULL; + + if (found && *found) + return NULL; + + // we search the argument data for the named fileset (argname) + psArray *infiles = psMetadataLookupPtr(&status, config->arguments, argname); + if (!status) { + psTrace("psModules.camera", 5, "Failed to find %s in argument list", argname); + return NULL; + } + if (infiles->n <= entry) { + psError(PS_ERR_IO, false, "only %ld files in %s in argument, entry %d requested\n", infiles->n, argname, entry); + return NULL; + } + + // examine the list of input files and validate their cameras + // associated each filename with an element of the FPA + // save the association on file->names + fits = psFitsOpen (infiles->data[entry], "r"); + phu = psFitsReadHeader (NULL, fits); + psFitsClose (fits); + + // on first call to this function, config->camera is not set. + // later calls will give an error if the cameras do not match + format = pmConfigCameraFormatFromHeader (config, phu); + if (!format) { + psError(PS_ERR_IO, false, "Failed to read CCD format from %s\n", (char *)infiles->data[0]); + psFree(phu); + return NULL; + } + + // build the template fpa, set up the basic view + fpa = pmFPAConstruct (config->camera); + if (!fpa) { + psError(PS_ERR_IO, false, "Failed to construct FPA from %s", (char *)infiles->data[0]); + return NULL; + } + + // load the given filerule (from config->camera) and bind it to the fpa + // the returned file is just a view to the entry on config->files + // we need a variable name here... (but in filerule) + file = pmFPAfileDefineInput (config, fpa, filename); + if (!file) { + psError(PS_ERR_IO, false, "file %s not defined\n", filename); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + psFree (file->format); + file->format = format; + + // adjust the rules to identify these files in the file->names data + psFree (file->filerule); + psFree (file->filextra); + file->filerule = psStringCopy ("@FILES"); + file->filextra = psStringCopy ("{CHIP.NAME}.{CELL.NAME}"); + + // find the matching fileLevel + psMetadata *filemenu = psMetadataLookupPtr (&status, format, "FILE"); + if (!filemenu) { + psError (PS_ERR_IO, true, "missing FILE in FORMAT"); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + char *levelName = psMetadataLookupStr (&status, filemenu, "PHU"); + if (!levelName) { + psError (PS_ERR_IO, true, "missing PHU in FILE in FORMAT"); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + file->fileLevel = pmFPALevelFromName (levelName); + if (file->fileLevel == PM_FPA_LEVEL_NONE) { + psError (PS_ERR_IO, true, "unknown level"); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + + // set the view to the corresponding entry for this phu + pmFPAview *view = pmFPAAddSourceFromHeader (fpa, phu, format); + if (!view) { + psError(PS_ERR_IO, false, "Unable to determine source for %s", file->name); + psFree(phu); + psFree(fpa); + psFree(format); + return NULL; + } + + // associate the filename with the FPA element + char *name = pmFPAfileNameFromRule (file->filextra, file, view); + + // save the name association in the pmFPAfile structure + psMetadataAddStr (file->names, PS_LIST_TAIL, name, 0, "", infiles->data[entry]); + + psFree (view); + psFree (name); + psFree (phu); + psFree (fpa); + + if (found) + *found = true; + return file; +} + +// define the named pmFPAfile from the camera->config +// only valid for pmFPAfile->mode = READ +pmFPAfile *pmFPAfileDefineFromConf (bool *found, pmConfig *config, const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + + if (found && *found) + return NULL; + + // a camera config is needed (as source of file rule) + if (config->camera == NULL) { + psError(PS_ERR_IO, true, "camera is not defined"); + return NULL; + } + + // build the template fpa, set up the basic view + pmFPA *fpa = pmFPAConstruct (config->camera); + if (!fpa) { + psError(PS_ERR_IO, false, "Failed to construct FPA for %s", filename); + return NULL; + } + + // load the given filerule (from config->camera) and bind it to the fpa + // the returned file is just a view to the entry on config->files + pmFPAfile *file = pmFPAfileDefineInput (config, fpa, filename); + psFree (fpa); + if (!file) { + psError(PS_ERR_IO, false, "file %s not defined\n", filename); + return NULL; + } + + // image names may not come from file->names + if (!strcasecmp (file->filerule, "@FILES")) { + psError(PS_ERR_IO, true, "supplied filerule uses illegal value @FILES"); + // XXX remove the file from config->files + psFree(file); + return NULL; + } + + // image names may come from the detrend database + if (!strcasecmp (file->filerule, "@DETDB")) { + psTrace ("pmFPAfile", 5, "requiring use of detrend database source\n"); + // don't free the file here: it is left on config->files + // to be used optionally by pmFPAfileDefineFromDetDB (or others) + return NULL; + } + + // Prepend the global path to the file rule + // this function is implicitly an INPUT operation: do not create the file + psString tmpName = pmConfigConvertFilename (file->filerule, config, false); + psFree (file->filerule); + file->filerule = tmpName; + + if (found) + *found = true; + return file; +} + +// construct an FPA based on the supplied config->camera +// built the association between the FPA elements (CHIP/CELL) and the files +// define the pmFPAfile filename and bind it to this FPA +// save the pmFPAfile on config->files +// return the pmFPAfile (a view to the one saved on config->files) +pmFPAfile *pmFPAfileDefineFromDetDB (bool *found, pmConfig *config, const char *filename, + pmFPA *input, pmDetrendType type) +{ + PS_ASSERT_PTR_NON_NULL(input, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->camera, NULL); + PS_ASSERT_PTR_NON_NULL(config->files, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + + bool status; + pmFPA *fpa = NULL; + pmFPAfile *file = NULL; + + if (found && *found) + return NULL; + + // a camera config is needed (as source of file rule) + if (config->camera == NULL) { + psError(PS_ERR_IO, true, "camera is not defined"); + return NULL; + } + // a camera config is needed (as source of file rule) + if (config->cameraName == NULL) { + psAbort("camera defined but not cameraName!"); + } + + // find or define a pmFPAfile with this name + file = psMetadataLookupPtr (NULL, config->files, filename); + if (!file) { + // build the template fpa, set up the basic view + fpa = pmFPAConstruct (config->camera); + if (!fpa) { + psError(PS_ERR_IO, false, "Failed to construct FPA for %s", filename); + return NULL; + } + // load the given filerule (from config->camera) and bind it to the fpa + // the returned file is just a view to the entry on config->files + file = pmFPAfileDefineInput (config, fpa, filename); + if (!file) { + psError(PS_ERR_IO, false, "file %s not defined\n", filename); + psFree (fpa); + return NULL; + } + } + + // we are constructing a detselect command of the form: + // detselect -search -inst (camera) -type (type) -time (time) [others] + // camera, type, and time are derived from pmFPA *input, other options are + // added if specified for the particular detrend type by the DETREND.CONSTRAINTS + // note that the filter-dependent choices are set for ppImage in ppImageParseCamera + // XXX make all of the detrend constraints explicit in DETREND.CONSTRAINTS? + + // Get the time from FPA.TIME + psTime *time = psMetadataLookupPtr(NULL, input->concepts, "FPA.TIME"); + if (time->sec == 0 && time->nsec == 0) { + psLogMsg ("psModules.camera", PS_LOG_WARN, "FPA.TIME has not been set.\n"); + } + pmDetrendSelectOptions *options = pmDetrendSelectOptionsAlloc(config->cameraName, *time, type); + + // add additional constraints based on the type defined in the PPIMAGE recipe + // XXX use PPIMAGE or DETREND for the recipe name? + psMetadata *recipe = psMetadataLookupPtr (&status, config->recipes, "PPIMAGE"); + if (!status) + psAbort("PPIMAGE recipe not found"); + psMetadata *detConstraints = psMetadataLookupPtr (&status, recipe, "DETREND.CONSTRAINTS"); + if (!status) + psAbort("DETREND.CONSTRAINTS not found"); + // XXX allow this and just skip? + + psString typeName = pmDetrendTypeToString (type); + psMetadata *constraints = psMetadataLookupPtr (&status, detConstraints, typeName); + if (!status) { + psAbort("DETREND.CONSTRAINTS for type %s not found", typeName); + } + psFree(typeName); + + // loop over the constraints and include in the detselect options + psMetadataIterator *iter = psMetadataIteratorAlloc (constraints, PS_LIST_HEAD, NULL); + psMetadataItem *item = NULL; + while ((item = psMetadataGetAndIncrement (iter)) != NULL) { + if (item->type != PS_DATA_STRING) { + psAbort("invalid type for DETREND.CONSTRAINT element"); + } + char *option = item->name; // item->name must correspond to a valid detselect option + char *concept = item->data.V; + + // these items refer to the corresponding values for the input image + // (ie, -filter input:filter or -exptime input:exptime) + if (!strcasecmp (option, "filter")) { + options->filter = psMetadataLookupPtr (&status, input->concepts, concept); + psMemIncrRefCounter (options->filter); + if (!status) + psAbort("failed to find filter (concept %s)", concept); + + } + if (!strcasecmp (option, "exptime")) { + options->exptime = psMetadataLookupF32 (&status, input->concepts, concept); + options->exptimeSet = true; + if (!status) + psAbort("exptime not found (concept %s)", concept); + } + if (!strcasecmp (option, "airmass")) { + options->airmass = psMetadataLookupF32 (&status, input->concepts, concept); + options->airmassSet = true; + if (!status) + psAbort("airmass not found (concept %s)", concept); + } + if (!strcasecmp (option, "dettemp")) { + options->dettemp = psMetadataLookupF32 (&status, input->concepts, concept); + options->dettempSet = true; + if (!status) + psAbort("dettemp not found (concept %s)", concept); + } + if (!strcasecmp (option, "twilight")) { + options->twilight = psMetadataLookupF32 (&status, input->concepts, concept); + options->twilightSet = true; + if (!status) + psAbort("twilight not found (concept %s)", concept); + } + + // the version is applied literally + if (!strcasecmp (option, "version")) { + options->version = psMemIncrRefCounter (concept); + } + // we can override the detrend database dettype if desired + // ie, use DOMEFLAT for type FLAT + // the dettype string is applied literally + if (!strcasecmp (option, "dettype")) { + options->dettype = psMemIncrRefCounter (concept); + } + } + psFree(iter); + + // search for existing detrend data (detID) + pmDetrendSelectResults *results = pmDetrendSelect (options, config); + if (!results) { + psError (PS_ERR_IO, false, "no matching detrend data"); + return NULL; + } + + // replace the existing value of filextra with the selected detID + psFree (file->filextra); + file->filextra = psStringCopy (results->detID); + + // set the fileLevel based on the detDB results + // XXX this is not supplied by the db. use the config value for now. + // file->fileLevel = results->level; + + psFree (results); + psFree (options); + + if (found) + *found = true; + return file; +} + +// create a new output pmFPAfile based on an existing FPA +// only valid for pmFPAfile->mode == WRITE (or internal?) +pmFPAfile *pmFPAfileDefineFromFPA (pmConfig *config, pmFPA *src, int xBin, int yBin, const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_PTR_NON_NULL(src, false); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + + // Need to look up the format + bool mdok; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, src->camera, "FORMATS"); // The FORMATS + if (!mdok || !formats) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FORMATS in camera configuration %s.\n", + config->cameraName); + return NULL; + } + psMetadata *format = psMetadataLookupMetadata(&mdok, formats, config->formatName); // The format + if (!mdok || !format) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find camera format %s within camera %s.\n", + config->formatName, config->cameraName); + return NULL; + } + + pmFPA *fpa = pmFPAConstruct(src->camera); + pmFPAfile *file = pmFPAfileDefineOutput (config, fpa, filename); + if (!file) { + psErrorStackPrint(stderr, "file %s not defined\n", filename); + return NULL; + } + file->src = src; // inherit output elements from this source pmFPA + file->xBin = xBin; + file->yBin = yBin; + psFree (fpa); + return file; +} + +// create a new output pmFPAfile based on an existing FPA +// only valid for pmFPAfile->mode == WRITE (or internal?) +pmFPAfile *pmFPAfileDefineNewCamera (pmConfig *config, const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + + pmFPAfile *file = pmFPAfileDefineOutput (config, NULL, filename); + if (!file) { + psErrorStackPrint(stderr, "file %s not defined\n", filename); + return NULL; + } + if (!file->camera) { + psErrorStackPrint(stderr, "file %s does not define a new camera\n", filename); + return NULL; + } + file->fpa = pmFPAConstruct(file->camera); + + return file; +} + +pmFPAfile *pmFPAfileDefineChipMosaic(pmConfig *config, pmFPA *src, const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(src, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_STRING_NON_EMPTY(config->cameraName, NULL); + PS_ASSERT_STRING_NON_EMPTY(config->formatName, NULL); + + if (config->cameraName[0] == '_' && + strcmp(config->cameraName + strlen(config->cameraName) - 5, "-CHIP") == 0) { + // The input camera has already been mosaicked to this level + pmFPAfile *file = pmFPAfileDefineOutput(config, NULL, filename); + psFree (file->camera); + psFree (file->format); + psFree (file->fpa); + file->camera = psMemIncrRefCounter(config->camera); + file->format = psMemIncrRefCounter(config->format); + file->fpa = pmFPAConstruct(file->camera); + return file; + } + + // Find the correct camera configuration + bool mdok; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, config->site, "CAMERAS"); // Camera configurations + if (!mdok || !cameras) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find CAMERAS in the site configuration.\n"); + return NULL; + } + psString name = NULL; // Name of the new (automatically-generated) camera configuration + psStringAppend(&name, "_%s-CHIP", config->cameraName); + psMetadata *camera = psMetadataLookupMetadata(&mdok, cameras, name); // Camera configuration of interest + if (!mdok || !camera) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find automatically generated " + "camera configuration %s in site configuration.\n", name); + psFree(name); + return NULL; + } + psFree(name); + + // Need to look up the format of the same name, but under the mosaic camera + psMetadata *formats = psMetadataLookupMetadata(&mdok, camera, "FORMATS"); // The FORMATS + if (!mdok || !formats) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FORMATS in camera configuration %s.\n", + config->cameraName); + return NULL; + } + psMetadata *format = psMetadataLookupMetadata(&mdok, formats, config->formatName); // The format + if (!mdok || !format) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find camera format %s within camera %s.\n", + config->formatName, config->cameraName); + return NULL; + } + + pmFPA *fpa = pmFPAConstruct(camera); + if (!fpa) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to generate mosaicked camera.\n"); + return NULL; + } + pmFPAfile *file = pmFPAfileDefineOutput(config, fpa, filename); + if (!file) { + psErrorStackPrint(stderr, "file %s not defined\n", filename); + return NULL; + } + file->src = src; // inherit output elements from this source pmFPA + file->mosaicLevel = PM_FPA_LEVEL_CHIP; // don't do any I/O on this at a lower level + + psFree (file->format); + file->format = psMemIncrRefCounter(format); + + psFree(fpa); + + return file; +} + +pmFPAfile *pmFPAfileDefineFPAMosaic(pmConfig *config, pmFPA *src, const char *filename) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(src, NULL); + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_STRING_NON_EMPTY(config->cameraName, NULL); + + if (config->cameraName[0] == '_' && + strcmp(config->cameraName + strlen(config->cameraName) - 4 , "-FPA") == 0) { + // The input camera has already been mosaicked to this level + pmFPAfile *file = pmFPAfileDefineOutput(config, NULL, filename); + psFree (file->camera); + psFree (file->format); + psFree (file->fpa); + file->camera = psMemIncrRefCounter(config->camera); + file->format = psMemIncrRefCounter(config->format); + file->fpa = pmFPAConstruct(file->camera); + return file; + } + + // Find the correct camera configuration + bool mdok; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, config->site, "CAMERAS"); // Camera configurations + if (!mdok || !cameras) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find CAMERAS in the site configuration.\n"); + return NULL; + } + psString original; // Name of the original camera configuration + psString name = NULL; // Name of the new (automatically-generated) camera configuration + if (config->cameraName[0] == '_' && + strcmp(config->cameraName + strlen(config->cameraName) - 5 , "-CHIP") == 0) { + // It's a chip mosaic; we need to get the original name + original = psStringNCopy(config->cameraName + 1, strlen(config->cameraName) - 6); + } else { + original = psMemIncrRefCounter(config->cameraName); + } + psStringAppend(&name, "_%s-FPA", original); + psFree(original); + psMetadata *camera = psMetadataLookupMetadata(&mdok, cameras, name); // Camera configuration of interest + if (!mdok || !camera) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find automatically generated " + "camera configuration %s in site configuration.\n", name); + psFree(name); + return NULL; + } + psFree(name); + + // Need to look up the format of the same name, but under the mosaic camera + psMetadata *formats = psMetadataLookupMetadata(&mdok, camera, "FORMATS"); // The FORMATS + if (!mdok || !formats) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FORMATS in camera configuration %s.\n", + config->cameraName); + return NULL; + } + psMetadata *format = psMetadataLookupMetadata(&mdok, formats, config->formatName); // The format + if (!mdok || !format) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find camera format %s within camera %s.\n", + config->formatName, config->cameraName); + return NULL; + } + + pmFPA *fpa = pmFPAConstruct(camera); + if (!fpa) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to generate mosaicked camera.\n"); + return NULL; + } + pmFPAfile *file = pmFPAfileDefineOutput(config, fpa, filename); + if (!file) { + psErrorStackPrint(stderr, "file %s not defined\n", filename); + return NULL; + } + file->src = src; // inherit output elements from this source pmFPA + file->mosaicLevel = PM_FPA_LEVEL_FPA; // don't do any I/O on this at a lower level + psFree (file->format); + file->format = psMemIncrRefCounter(format); + + psFree(fpa); + + return file; +} + +// create a file with the given name, assign it type "INTERNAL", and supply it with an image +// of the requested dimensions. (image only, mask and weight are ignored) +pmReadout *pmFPAfileDefineInternal (psMetadata *files, const char *name, int Nx, int Ny, int type) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + PS_ASSERT_STRING_NON_EMPTY(name, NULL); + + pmReadout *readout = pmReadoutAlloc(NULL); + readout->image = psImageAlloc(Nx, Ny, type); + + // I want an image from the + pmFPAfile *file = pmFPAfileAlloc(); + file->mode = PM_FPA_MODE_INTERNAL; + file->name = psStringCopy (name); + + file->readout = readout; + psMetadataAddPtr(files, PS_LIST_TAIL, name, PS_DATA_UNKNOWN, "", file); + psFree(file); + // we free this copy of file, but 'files' still has a copy + + return readout; +} + +bool pmFPAfileDropInternal(psMetadata *files, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + PS_ASSERT_STRING_NON_EMPTY(name, NULL); + + bool status = false; + + pmFPAfile *file = psMetadataLookupPtr (&status, files, name); + if (!status) { + psTrace("psModules.camera", 6, "Internal File %s not in file list", name); + return true; + } + if (file == NULL) { + psError(PS_ERR_IO, true, "file %s is NULL", name); + return false; + } + if (file->mode != PM_FPA_MODE_INTERNAL) { + psTrace("psModules.camera", 6, "FPA File %s not Internal, not dropping", name); + return true; + } + + psTrace("psModules.camera", 6, "dropping Internal FPA File %s", name); + psMetadataRemoveKey (files, name); + return true; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileDefine.h (revision 12167) @@ -0,0 +1,101 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#include + +/// @addtogroup Camera Camera Layout +/// @{ + +#ifndef PM_FPA_FILE_DEFINE_H +#define PM_FPA_FILE_DEFINE_H + +// load the pmFPAfile information from the camera configuration data +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineInput (pmConfig *config, pmFPA *fpa, const char *name); + +// load the pmFPAfile information from the camera configuration data +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineOutput (pmConfig *config, pmFPA *fpa, const char *name); + +// look for the given argname on the argument list. find the give filename from the file rules +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineFromArgs (bool *found, pmConfig *config, const char *filename, const char *argname); + +// look for the given argname on the argument list; bind the associated files to the specified +// fpa. these are, eg, mask or weight images. +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileBindFromArgs (bool *found, pmFPAfile *input, pmConfig *config, const char *filename, const char *argname); + +// look for the given argname on the argument list. find the give filename from the file rules +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineFromConf (bool *found, pmConfig *config, const char *filename); + +// look for the given argname on the argument list. find the give filename from the file rules +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineFromDetDB (bool *found, pmConfig *config, const char *filename, + pmFPA *input, pmDetrendType type); + +// create a new output pmFPAfile based on an existing FPA +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineFromFPA (pmConfig *config, pmFPA *src, int xBin, int yBin, const char *filename); + +// create a new output pmFPAfile based on an existing FPA +// only valid for pmFPAfile->mode == WRITE (or internal?) +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineNewCamera (pmConfig *config, const char *filename); + +/// Create a new output pmFPAfile based upon a chip mosaic of an existing FPA +/// +/// The new pmFPAfile is inserted into the config->files metadata, freed and returned; so that the user does +/// not have to (and should not!) free the result. +pmFPAfile *pmFPAfileDefineChipMosaic(pmConfig *config, ///< Configuration data + pmFPA *src, ///< Source FPA + const char *filename ///< Output (root) filename + ); + +/// Create a new output pmFPAfile based upon an FPA mosaic of an existing FPA +/// +/// The new pmFPAfile is inserted into the config->files metadata, freed and returned; so that the user does +/// not have to (and should not!) free the result. +pmFPAfile *pmFPAfileDefineFPAMosaic(pmConfig *config, ///< Configuration data + pmFPA *src, ///< Source FPA + const char *filename ///< Output (root) filename + ); + +// create a file with the given name, assign it type "INTERNAL", and supply it with an image +// of the requested dimensions. (image only, mask and weight are ignored) +pmReadout *pmFPAfileDefineInternal (psMetadata *files, const char *name, int Nx, int Ny, int type); + +// delete the INTERNAL file of the given name (if it exists) +bool pmFPAfileDropInternal (psMetadata *files, const char *name); + +// look for the given argname on the argument list. find the give filename from the file rules +// +// Note that the returned pmFPAfile is a view only, so it should not be freed by the caller --- the only +// reference count is held by the config->files metadata. +pmFPAfile *pmFPAfileDefineSingleFromArgs (bool *found, pmConfig *config, const char *filename, + const char *argname, int entry); +/// @} +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.c (revision 12167) @@ -0,0 +1,462 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "pmConfig.h" +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPARead.h" +#include "pmFPAWrite.h" +#include "pmFPAMaskWeight.h" +#include "pmFPAConstruct.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" +#include "pmFPAfileFitsIO.h" +#include "pmFPACopy.h" + +pmFPA *pmFPAfileSuitableFPA(const pmFPAfile *file, const pmFPAview *view, const pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, NULL); + PS_ASSERT_PTR_NON_NULL(view, NULL); + + if (//file->camera == config->camera || // Need to mosaic, not copy + !file->format) { // Working with the same output format as input format + return psMemIncrRefCounter(file->fpa); + } + + // May need to change format + pmFPALevel level = pmFPAviewLevel(view); // Level for the view + if (level == PM_FPA_LEVEL_NONE || level == PM_FPA_LEVEL_READOUT) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "This function shouldn't be called at the readout (or unknown) level."); + return NULL; + } + + // Does the HDU of interest conform to the desired format? + pmHDU *hdu = pmFPAviewThisHDU(view, file->fpa); // The HDU of interest + if (hdu && hdu->format == file->format) { + // No work required + return psMemIncrRefCounter(file->fpa); + } + + // Otherwise, we have to generate a copy with the correct format + + pmFPAview *phuView = pmFPAviewAlloc(0); // View corresponding to the PHU + *phuView = *view; // Copy contents + pmFPALevel phuLevel = pmFPAPHULevel(file->format); // Level for the PHU + switch (phuLevel) { + case PM_FPA_LEVEL_FPA: + phuView->chip = -1; + // Flow through + case PM_FPA_LEVEL_CHIP: + phuView->cell = -1; + // Flow through + case PM_FPA_LEVEL_CELL: + phuView->readout = -1; + break; + case PM_FPA_LEVEL_READOUT: + case PM_FPA_LEVEL_NONE: + default: + psAbort("Should never get here: bad phu level.\n"); + } + + pmFPA *nameSource = file->src; // Source of FPA.NAME + if (!nameSource) { + nameSource = file->fpa; + } + bool mdok; // Status of MD lookup + const char *fpaname = psMetadataLookupStr(&mdok, nameSource->concepts, "FPA.NAME"); // Name of FPA + + pmFPA *copy = pmFPAConstruct(file->camera); // FPA to return + if (!pmFPAAddSourceFromView(copy, fpaname, phuView, file->format)) { + psError(PS_ERR_UNKNOWN, false, "Unable to insert HDU into FPA for writing.\n"); + psFree(copy); + psFree(phuView); + return false; + } + psFree(phuView); + + switch (level) { + case PM_FPA_LEVEL_FPA: + if (!pmFPACopy(copy, file->fpa)) { + psError(PS_ERR_UNKNOWN, false, "Unable to copy FPA for format conversion.\n"); + return NULL; + } + return copy; + case PM_FPA_LEVEL_CHIP: { + pmChip *chip = pmFPAviewThisChip(view, copy); // Chip of interest + pmChip *srcChip = pmFPAviewThisChip(view, file->fpa); // Source chip + if (!pmChipCopy(chip, srcChip)) { + psError(PS_ERR_UNKNOWN, false, "Unable to copy chip for format conversion.\n"); + return false; + } + return copy; + } + case PM_FPA_LEVEL_CELL: { + pmCell *cell = pmFPAviewThisCell(view, copy); // Cell of interest + pmCell *srcCell = pmFPAviewThisCell(view, file->fpa); // Source cell + if (!pmCellCopy(cell, srcCell)) { + psError(PS_ERR_UNKNOWN, false, "Unable to copy cell for format conversion.\n"); + return false; + } + return copy; + } + case PM_FPA_LEVEL_READOUT: + case PM_FPA_LEVEL_NONE: + default: + psAbort("Should never get here: bad phu level.\n"); + } + + return NULL; + +} + +// given an already-opened fits file, read the table corresponding to the specified view +bool pmFPAviewReadFitsTable(const pmFPAview *view, pmFPAfile *file, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; // FPA of interest + psFits *fits = file->fits; // FITS file + + if (view->chip == -1) { + return pmFPAReadTable(fpa, fits, name) > 0; + } + + if (view->cell == -1) { + pmChip *chip = pmFPAviewThisChip(view, fpa); // Chip of interest + return pmChipReadTable(chip, fits, name) > 0; + } + + pmCell *cell = pmFPAviewThisCell(view, fpa); // Cell of interest + return pmCellReadTable(cell, fits, name) > 0; +} + +// given an already-opened fits file, write the table corresponding to the specified view +bool pmFPAviewWriteFitsTable(const pmFPAview *view, pmFPAfile *file, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; // FPA of interest + psFits *fits = file->fits; // FITS file + + if (view->chip == -1) { + return pmFPAWriteTable(fits, fpa, name) > 0; + } + + if (view->cell == -1) { + pmChip *chip = pmFPAviewThisChip(view, fpa); // Chip of interest + return pmChipWriteTable(fits, chip, name) > 0; + } + + pmCell *cell = pmFPAviewThisCell(view, fpa); // Cell of interest + return pmCellWriteTable(fits, cell, name) > 0; +} + + +// given an already-opened fits file, read the components corresponding to the specified view +static bool fpaViewReadFitsImage(const pmFPAview *view, // FPA view, specifying the level of interest + pmFPAfile *file, // FPA file of interest + bool (*fpaReadFunc)(pmFPA*, psFits*, psDB*), // Function to read FPA + bool (*chipReadFunc)(pmChip*, psFits*, psDB*), // Function to read chip + bool (*cellReadFunc)(pmCell*, psFits*, psDB*) // Function to read cell + ) +{ + assert(view); + assert(file); + + pmFPA *fpa = file->fpa; // FPA of interest + psFits *fits = file->fits; // FITS file from which to read + + if (view->chip == -1) { + return fpaReadFunc(fpa, fits, NULL); + } + + if (view->chip >= fpa->chips->n) { + psError(PS_ERR_IO, true, "Requested chip == %d >= fpa->chips->n == %ld", view->chip, fpa->chips->n); + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; // Chip of interest + + if (view->cell == -1) { + return chipReadFunc(chip, fits, NULL); + } + + if (view->cell >= chip->cells->n) { + psError(PS_ERR_IO, true, "Requested cell == %d >= chip->cells->n == %ld", view->cell, chip->cells->n); + return false; + } + pmCell *cell = chip->cells->data[view->cell]; // Cell of interest + + if (view->readout == -1) { + return cellReadFunc(cell, fits, NULL); + } + psError(PS_ERR_UNKNOWN, true, "Bad view: %d,%d", view->chip, view->cell); + return false; + + // XXX pmReadoutRead, pmReadoutReadSegement disabled for now + #if 0 + + if (view->readout >= cell->readouts->n) { + psError(PS_ERR_IO, true, "Requested readout == %d >= cell->readouts->n == %d", + view->readout, cell->readouts->n); + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + if (view->nRows == 0) { + pmReadoutRead (readout, fits, NULL); + } else { + pmReadoutReadSegment (readout, fits, view->nRows, view->iRows, NULL, NULL); + } + return true; + #endif +} + + +bool pmFPAviewReadFitsImage(const pmFPAview *view, pmFPAfile *file) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewReadFitsImage(view, file, pmFPARead, pmChipRead, pmCellRead); +} + +bool pmFPAviewReadFitsMask(const pmFPAview *view, pmFPAfile *file) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewReadFitsImage(view, file, pmFPAReadMask, pmChipReadMask, pmCellReadMask); +} + +bool pmFPAviewReadFitsWeight(const pmFPAview *view, pmFPAfile *file) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewReadFitsImage(view, file, pmFPAReadWeight, pmChipReadWeight, pmCellReadWeight); +} + +bool pmFPAviewReadFitsHeaderSet(const pmFPAview *view, pmFPAfile *file) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewReadFitsImage(view, file, pmFPAReadHeaderSet, pmChipReadHeaderSet, pmCellReadHeaderSet); +} + +// given an already-opened fits file, write the components corresponding +// to the specified view. when the file was opened, pmFPA/Chip/CellWrite was +// called on it with blank=true to write the (possible) blank PHU +// do NOT call the functions below with blank=true or they will write +// out data in an inconsistent fashion +// the calls below should recurse down the element to write out all components. +static bool fpaViewWriteFitsImage(const pmFPAview *view, // FPA view, specifying the level of interest + pmFPAfile *file, // FPA file of interest + const pmConfig *config, // Configuration + bool (*fpaWriteFunc)(pmFPA*, psFits*, psDB*, bool, bool), // Func for FPA + bool (*chipWriteFunc)(pmChip*, psFits*, psDB*, bool, bool), // Func for chip + bool (*cellWriteFunc)(pmCell*, psFits*, psDB*, bool) // Func for cell + ) +{ + assert(view); + assert(file); + + psFits *fits = file->fits; // FITS file + PS_ASSERT_PTR_NON_NULL(fits, false); + + pmFPA *fpa = pmFPAfileSuitableFPA(file, view, config); // FPA to write + + switch (pmFPAviewLevel(view)) { + case PM_FPA_LEVEL_FPA: { + bool success = fpaWriteFunc(fpa, fits, NULL, false, true); + psFree(fpa); + return success; + } + case PM_FPA_LEVEL_CHIP: { + pmChip *chip = pmFPAviewThisChip(view, fpa); // Chip of interest + bool success = chipWriteFunc(chip, fits, NULL, false, true); + psFree(fpa); + return success; + } + case PM_FPA_LEVEL_CELL: { + pmCell *cell = pmFPAviewThisCell(view, fpa); // Cell of interest + bool success = cellWriteFunc(cell, fits, NULL, false); + psFree(fpa); + return success; + } + case PM_FPA_LEVEL_READOUT: + #if 0 // XXX disable readout write for now + + { + pmReadout *readout = pmFPAviewThisReadout(view, file->fpa); // Readout of interest + if (changeFormat) + { + // No copy function defined for readouts! + psError(PS_ERR_UNKNOWN, false, "Unable to copy readout for format conversion on write.\n"); + return false; + } + if (view->nRows == 0) + { + return pmReadoutWrite(readout, fits, NULL, NULL); + } else + { + return pmReadoutWriteSegment(readout, fits, view->nRows, view->iRows, NULL, NULL); + } + } + #endif + case PM_FPA_LEVEL_NONE: + default: + psAbort("Should never reach here: invalid file level."); + } + + return false; +} + +bool pmFPAviewWriteFitsImage(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewWriteFitsImage(view, file, config, pmFPAWrite, pmChipWrite, pmCellWrite); +} + +bool pmFPAviewWriteFitsMask(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewWriteFitsImage(view, file, config, pmFPAWriteMask, pmChipWriteMask, pmCellWriteMask); +} + +bool pmFPAviewWriteFitsWeight(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + return fpaViewWriteFitsImage(view, file, config, pmFPAWriteWeight, pmChipWriteWeight, pmCellWriteWeight); +} + +// given an already-opened fits file, read the components corresponding +// to the specified view +bool pmFPAviewFreeData(const pmFPAview *view, pmFPAfile *file) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + psTrace ("pmFPAfile", 5, "freeing fpa for %s\n", file->filename); + pmFPAFreeData (fpa); + // XXX drop me: file->fpa = NULL; + return true; + } + + if (view->chip >= fpa->chips->n) { + psError(PS_ERR_IO, true, "Requested chip == %d >= fpa->chips->n == %ld", view->chip, fpa->chips->n); + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + psTrace ("pmFPAfile", 5, "freeing chip %d for %s\n", view->chip, file->filename); + pmChipFreeData (chip); + return true; + } + + if (view->cell >= chip->cells->n) { + psError(PS_ERR_IO, true, "Requested cell == %d >= chip->cells->n == %ld", view->cell, chip->cells->n); + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + psTrace ("pmFPAfile", 5, "freeing cell %d for %s\n", view->cell, file->filename); + pmCellFreeData (cell); + return true; + } + psError(PS_ERR_UNKNOWN, true, "Returning false"); + return false; + + // XXX pmReadoutRead, pmReadoutReadSegement disabled for now + #if 0 + + if (view->readout >= cell->readouts->n) { + psError(PS_ERR_IO, true, "Requested readout == %d >= cell->readouts->n == %d", + view->readout, cell->readouts->n); + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + if (view->nRows == 0) { + pmReadoutRead (readout, fits, NULL); + } else { + pmReadoutReadSegment (readout, fits, view->nRows, view->iRows, NULL, NULL); + } + return true; + #endif +} + +#if 0 +// Shouldn't need this --- when we want to free fringe data, we want to free the whole level, not just the +// table. + +// Free the table within a cell +static void freeTable(pmCell *cell, // Cell of interest + const char *name // Name of table to free + ) +{ + assert(cell); + assert(name && strlen(name) > 0); + + psString headerName = NULL; // Name of header + psStringAppend(&headerName, "%s.HEADER", name); + if (psMetadataLookup(cell->analysis, headerName)) { + psMetadataRemoveKey(cell->analysis, headerName); + } + psFree(headerName); + + if (psMetadataLookup(cell->analysis, name)) { + psMetadataRemoveKey(cell->analysis, name); + } + + return; +} + +// given a file, free the components corresponding to the specified view +bool pmFPAviewFreeFitsTable (const pmFPAview *view, pmFPAfile *file, const char *name) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + psArray *chips = fpa->chips; // Array of chips + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + psArray *cells = chip->cells; // Array of cells + for (int j = 0; j < cells->n; j++) { + pmCell *cell = cells->data[j]; // Cell of interest + freeTable(cell, name); + } + } + return true; + } + + if (view->cell == -1) { + pmChip *chip = pmFPAviewThisChip(view, fpa); // Chip of interest + psArray *cells = chip->cells; // Array of cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + freeTable(cell, name); + } + return true; + } + + pmCell *cell = pmFPAviewThisCell(view, fpa); // Cell of interest + freeTable(cell, name); + return true; +} + +#endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileFitsIO.h (revision 12167) @@ -0,0 +1,85 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * @author PAP, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-15 00:34:00 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_FILE_FITS_IO_H +#define PM_FPA_FILE_FITS_IO_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// Read an image into the current view +bool pmFPAviewReadFitsImage(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file ///< FPA file into which to read + ); + +/// Read a mask into the current view +bool pmFPAviewReadFitsMask(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file ///< FPA file into which to read + ); +/// Read a weight map into the current view +bool pmFPAviewReadFitsWeight(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file ///< FPA file into which to read + ); + +/// Read an image header into the current view +bool pmFPAviewReadFitsHeaderSet(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file ///< FPA file into which to read + ); + +/// Write the image for the specified view +bool pmFPAviewWriteFitsImage(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file, ///< FPA file to write + pmConfig *config ///< Configuration + ); + +/// Write the mask for the specified view +bool pmFPAviewWriteFitsMask(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file, ///< FPA file to write + pmConfig *config ///< Configuration + ); + +/// Write the weight map for the specified view +bool pmFPAviewWriteFitsWeight(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file, ///< FPA file to write + pmConfig *config ///< Configuration + ); + +/// Free the data for the specified view +bool pmFPAviewFreeData(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file ///< FPA file to free data + ); + +/// Read a table into the current view +bool pmFPAviewReadFitsTable(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file, ///< FPA file into which to read + const char *name ///< Name of table + ); + +/// Write the table for the specified view +bool pmFPAviewWriteFitsTable(const pmFPAview *view, ///< View specifying level of interest + pmFPAfile *file, ///< FPA file to write + const char *name ///< Name of table + ); + +/// Produce a suitable FPA for writing, on the basis of the input FPAfile +/// +/// A new FPA with a changed format is generated if required (file->format is set and file->camera is equal to +/// the default, indicating a change in the format without changing the camera --- changes to the camera are +/// handled using other systems --- see pmFPAfileDefineChipMosaic, pmFPAfileDefineFPAMosaic). Otherwise the +/// file->fpa is returned (incremented). +pmFPA *pmFPAfileSuitableFPA(const pmFPAfile *file,///< File containing the fpa + const pmFPAview *view, ///< View at which to produce the fpa + const pmConfig *config ///< Configuration + ); + +/// @} + +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.c (revision 12167) @@ -0,0 +1,939 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConfig.h" +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmFPAConstruct.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" +#include "pmFPACopy.h" +#include "pmFPARead.h" +#include "pmFPAWrite.h" +#include "pmFPAfileFitsIO.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmSourceIO.h" +#include "pmGrowthCurve.h" +#include "pmPSF.h" +#include "pmPSF_IO.h" +#include "pmFPA_JPEG.h" +#include "pmFPA_MANAPLOT.h" +#include "pmSourcePlots.h" +#include "pmDetrendDB.h" + +// Open a file that contains an image +static bool openImage(pmFPAfile *file, // File to open + const pmFPAview *view, // View pointing to open level + const char *mode, // Open mode (for psFitsOpen) + pmConfig *config // Configuration + ) +{ + file->fits = psFitsOpen (file->filename, mode); + if (file->fits == NULL) { + psError(PS_ERR_IO, false, "error opening file %s\n", file->filename); + return false; + } + file->state = PM_FPA_STATE_OPEN; + + // In some cases, I need to call pmFPAAddSourceFromHeader after I've opened the file, + // specifically if I have not called this function on startup. This happens for the + // images supplied by the detrend database, which are only identified here (above). + // this is never true for the output images, which are constructed later + + if (file->mode == PM_FPA_MODE_READ) { + bool addSource = false; + switch (file->fileLevel) { + case PM_FPA_LEVEL_FPA: + addSource = !file->fpa->hdu; + break; + case PM_FPA_LEVEL_CHIP: { + pmChip *chip = pmFPAviewThisChip(view, file->fpa); + if (!chip) { + psError (PS_ERR_IO, true, "inconsistent file/fpa: fileLevel is CHIP, view is FPA"); + return false; + } + addSource = !chip->hdu; + break; + } + case PM_FPA_LEVEL_CELL: { + pmCell *cell = pmFPAviewThisCell(view, file->fpa); + if (!cell) { + psError (PS_ERR_IO, true, "inconsistent file/fpa: fileLevel is CELL, view is FPA"); + return false; + } + addSource = !cell->hdu; + break; + } + default: + psAbort("fileLevel not correctly set"); + break; + } + + if (addSource) { + psMetadata *phu = psFitsReadHeader (NULL, file->fits); + if (!file->format) { + file->format = pmConfigCameraFormatFromHeader (config, phu); + if (!file->format) { + psError(PS_ERR_IO, false, "Failed to read CCD format from %s\n", file->filename); + psFree(phu); + return NULL; + } + } else { + bool valid; + if (!pmConfigValidateCameraFormat (&valid, file->format, phu)) { + psError (PS_ERR_UNKNOWN, false, "Error in config scripts\n"); + psFree (phu); + return NULL; + } + if (!valid) { + psError(PS_ERR_IO, false, "file %s is not from the required camera", file->filename); + psFree (phu); + return NULL; + } + } + pmFPAview *thisView = pmFPAAddSourceFromHeader (file->fpa, phu, file->format); + psFree (thisView); + psFree (phu); + // XXX we can check the output view to be sure it corresponds to our current view + } + } +#if 0 + // This should be done by pmFPAfileBlank + if (file->mode == PM_FPA_MODE_WRITE) { + // Want to write out any potential blank + pmFPA *fpa = pmFPAfileSuitableFPA(file, view, config); + + switch (file->fileLevel) { + case PM_FPA_LEVEL_FPA: + pmFPAWrite(fpa, file->fits, NULL, true, false); + break; + case PM_FPA_LEVEL_CHIP: { + pmChip *chip = pmFPAviewThisChip(view, fpa); + pmChipWrite(chip, file->fits, NULL, true, false); + break; + } + case PM_FPA_LEVEL_CELL: { + pmCell *cell = pmFPAviewThisCell(view, fpa); + pmCellWrite(cell, file->fits, NULL, true); + break; + } + default: + psAbort("fileLevel not correctly set"); + break; + } + + psFree(fpa); + } +#endif + return true; + +} + + +// open file (if not already opened) +bool pmFPAfileOpen (pmFPAfile *file, const pmFPAview *view, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + bool status; + char *mode = NULL; + char *readMode = "r"; + char *writeMode = "w"; + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip open for %s, files is inactive", file->name); + return true; + } + + if (file->state == PM_FPA_STATE_OPEN) { + return true; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + // do we need to open this file? + if (level != file->fileLevel) { + psTrace("psModules.camera", 6, "skip open of %s at this level %s: fileLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->fileLevel)); + return true; + } + + if (file->mode == PM_FPA_MODE_NONE) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_NONE"); + return false; + } + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + if (file->mode == PM_FPA_MODE_READ) { + mode = readMode; + } + if (file->mode == PM_FPA_MODE_WRITE) { + mode = writeMode; + } + + if ((file->mode == PM_FPA_MODE_WRITE) && !file->save) { + psTrace("psModules.camera", 6, "skip open for %s, output file not requested", file->name); + return true; + } + + // determine the file name + // free a name allocated earlier + // XXX for CMP files which defer opening, we have an inconsistent value + // for file->extra here and in the pmFPAfileDefine fucntions. + // + psFree (file->filename); + file->filename = pmFPAfileNameFromRule (file->filerule, file, view); + if (file->filename == NULL) { + psError(PS_ERR_IO, true, "Filename is NULL"); + return false; + } + + // indirect filenames + if (!strcasecmp (file->filename, "@FILES")) { + char *extra = pmFPAfileNameFromRule (file->filextra, file, view); + if (extra == NULL) { + psError(PS_ERR_IO, false, "error converting extrule to name %s\n", file->extrule); + return false; + } + + psFree (file->filename); + file->filename = psMetadataLookupStr (&status, file->names, extra); + + if (file->filename == NULL) { + psError(PS_ERR_IO, true, "filename lookup error (@FILES) for %s : %s\n", file->filextra, extra); + psFree (extra); + return false; + } + // psMetadataLookupStr just returns a view, file->filename must be protected + psMemIncrRefCounter (file->filename); + psFree (extra); + } + + // get name from detrend database + // extrule expands to yield the class_id + // filextra contains the desired -det_id detID -iteration iter string + if (!strcasecmp (file->filename, "@DETDB")) { + char *extra = pmFPAfileNameFromRule (file->extrule, file, view); + if (extra == NULL) { + psError(PS_ERR_IO, false, "error converting extrule to name %s\n", file->extrule); + return false; + } + psTrace ("pmFPAfile", 6, "looking for detrend (%s, %s)\n", file->filextra, extra); + + psFree (file->filename); + file->filename = pmDetrendFile(file->filextra, extra, config); + if (file->filename == NULL) { + psError(PS_ERR_IO, false, "failed to find a valid detrend image for detID %s : classID %s\n", file->filextra, extra); + psFree (extra); + return false; + } + + psTrace ("pmFPAfile", 6, "got detrend file %s\n", file->filename); + psFree (extra); + } + + // apply filename mangling rules (file://, path://, neb://) + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + psString tmpName = pmConfigConvertFilename (file->filename, config, create); + psFree (file->filename); + file->filename = tmpName; + + switch (file->type) { + // open the FITS types: + case PM_FPA_FILE_IMAGE: + case PM_FPA_FILE_MASK: + case PM_FPA_FILE_WEIGHT: + case PM_FPA_FILE_HEADER: + case PM_FPA_FILE_FRINGE: + psTrace ("pmFPAfile", 5, "opening %s (type: %d)\n", file->filename, file->type); + if (!openImage(file, view, mode, config)) { + psError(PS_ERR_UNKNOWN, false, "Unable to open image %s (type %d)\n", file->filename, file->type); + return false; + } + break; + // open the FITS object files + case PM_FPA_FILE_CMF: + psTrace ("pmFPAfile", 5, "opening %s (type: %d)\n", file->filename, file->type); + file->fits = psFitsOpen (file->filename, mode); + if (file->fits == NULL) { + psError(PS_ERR_IO, false, "error opening file %s\n", file->filename); + return false; + } + file->state = PM_FPA_STATE_OPEN; + break; + + // defer opening TEXT types: + case PM_FPA_FILE_SX: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_PSF: + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_KAPA: + case PM_FPA_FILE_MANAPLOT: + psTrace ("pmFPAfile", 5, "defer opening %s\n", file->filename); + break; + + default: + psError(PS_ERR_IO, true, "type mismatch for %s : %d\n", file->filename, file->type); + return false; + } + return true; +} + +bool pmFPAfileRead(pmFPAfile *file, const pmFPAview *view, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip read for %s, files is inactive", file->name); + return true; + } + + if (file->mode != PM_FPA_MODE_READ) { + psTrace("psModules.camera", 6, "skip read for %s, mode is not READ", file->name); + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + // do we need to open this file? + if (level == file->fileLevel) { + if (!pmFPAfileOpen (file, view, config)) { + psError(PS_ERR_IO, false, "failed to open file %s", file->name); + return false; + } + } + + // do we need to read this file? + if (level != file->dataLevel) { + psTrace("psModules.camera", 6, "skip reading of %s at this level %s: dataLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->dataLevel)); + return true; + } + + // We need to read it --- double-check it's open! + if (file->state == PM_FPA_STATE_CLOSED) { + file->fileLevel = level; + if (!pmFPAfileOpen (file, view, config)) { + psError(PS_ERR_IO, false, "failed to open file %s when attempting to read", file->name); + return false; + } + } + + switch (file->type) { + case PM_FPA_FILE_IMAGE: + if (!pmFPAviewReadFitsImage(view, file)) { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + case PM_FPA_FILE_MASK: + if (!pmFPAviewReadFitsMask(view, file)) { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + case PM_FPA_FILE_WEIGHT: + if (!pmFPAviewReadFitsWeight(view, file)) { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + case PM_FPA_FILE_HEADER: + if (!pmFPAviewReadFitsHeaderSet(view, file)) { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + case PM_FPA_FILE_FRINGE: + if (!pmFPAviewReadFitsImage (view, file)) { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + + if (!pmFPAviewReadFitsTable(view, file, "FRINGE")) { + psError(PS_ERR_UNKNOWN, false, "Unable to read fringe data from %s.\n", file->filename); + return false; + } + + break; + + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_CMF: + pmFPAviewReadObjects (view, file, config); + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + + case PM_FPA_FILE_PSF: + pmFPAviewReadPSFmodel (view, file, config); + psTrace ("pmFPAfile", 5, "reading %s (type: %d)\n", file->filename, file->type); + break; + + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_KAPA: + case PM_FPA_FILE_MANAPLOT: + break; + + default: + psError(PS_ERR_IO, true, "warning: type mismatch; saw type %d", file->type); + return false; + } + return true; +} + +bool pmFPAfileFreeData(pmFPAfile *file, const pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip free for %s, files is inactive", file->name); + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + // do we need to read this file? + if (level != file->freeLevel) { + psTrace("psModules.camera", 6, "skip free of %s at this level %s: freeLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->freeLevel)); + return true; + } + + switch (file->type) { + case PM_FPA_FILE_IMAGE: + case PM_FPA_FILE_MASK: + case PM_FPA_FILE_WEIGHT: + case PM_FPA_FILE_HEADER: + case PM_FPA_FILE_FRINGE: + if (pmFPAviewFreeData(view, file)) { + psTrace ("pmFPAfile", 5, "freed %s for %s (type: %d)\n", file->filename, file->name, file->type); + if (file->filename == NULL) { + psTrace ("pmFPAfile", 5, "filename is not defined for %s\n", file->name); + } + } else { + psError(PS_ERR_UNKNOWN, false, "skipping %s (type: %d)\n", file->filename, file->type); + return false; + } + break; + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_CMF: + // pmFPAviewFreeObjects (view, file); + psTrace ("pmFPAfile", 5, "NOT freeing %s (type: %d)\n", file->filename, file->type); + break; + + // XXX not certain what I need to free here + case PM_FPA_FILE_PSF: + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_KAPA: + case PM_FPA_FILE_MANAPLOT: + break; + + default: + psError(PS_ERR_IO, true, "warning: type mismatch; saw type %d", file->type); + return false; + } + return true; +} + +bool pmFPAfileBlank(pmFPAfile *file, const pmFPAview *view, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip blank for %s, files is inactive", file->name); + return true; + } + + if (file->mode != PM_FPA_MODE_WRITE) { + psTrace("psModules.camera", 6, "skip blank for %s, mode is not WRITE", file->name); + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + if (!file->save) { + psTrace("psModules.camera", 6, "skip blank for %s, save is FALSE", file->name); + return true; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + if (level != file->fileLevel) { + psTrace("psModules.camera", 6, "skip blank for %s, level is %s", file->name, + pmFPALevelToName(file->freeLevel)); + return true; + } + + // do we need to open this file? + if (!pmFPAfileOpen (file, view, config)) { + psError(PS_ERR_IO, false, "failed to open %s", file->filename); + return false; + } + + switch (file->type) { + case PM_FPA_FILE_IMAGE: + case PM_FPA_FILE_MASK: + case PM_FPA_FILE_WEIGHT: + case PM_FPA_FILE_FRINGE: + if (file->mode == PM_FPA_MODE_WRITE) { + // Want to write out any potential blank + pmFPA *fpa = pmFPAfileSuitableFPA(file, view, config); // FPA, ensuring it's ready to write a blank + + switch (file->fileLevel) { + case PM_FPA_LEVEL_FPA: + pmFPAWrite(fpa, file->fits, NULL, true, false); + break; + case PM_FPA_LEVEL_CHIP: { + pmChip *chip = pmFPAviewThisChip(view, fpa); + pmChipWrite(chip, file->fits, NULL, true, false); + break; + } + case PM_FPA_LEVEL_CELL: { + pmCell *cell = pmFPAviewThisCell(view, fpa); + pmCellWrite(cell, file->fits, NULL, true); + break; + } + default: + psAbort("fileLevel not correctly set"); + break; + } + + psFree(fpa); + } + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_CMF: + case PM_FPA_FILE_PSF: + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_MANAPLOT: + case PM_FPA_FILE_KAPA: + break; + default: + fprintf (stderr, "warning: type mismatch\n"); + return false; + } + return true; +} + + +bool pmFPAfileWrite(pmFPAfile *file, const pmFPAview *view, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip write for %s, files is inactive", file->name); + return true; + } + + if (file->mode != PM_FPA_MODE_WRITE) { + psTrace("psModules.camera", 6, "skip write for %s, mode is not WRITE", file->name); + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + if (!file->save) { + psTrace("psModules.camera", 6, "skip write for %s, save is FALSE", file->name); + return true; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + // do we need to write this file? + if ((file->mosaicLevel == PM_FPA_LEVEL_NONE && level != file->dataLevel) || // No mosaicking happening + (file->mosaicLevel != PM_FPA_LEVEL_NONE && level != file->mosaicLevel)) { // Mosaicking happening + psTrace("psModules.camera", 6, "skip writing of %s at this level %s: dataLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->dataLevel)); + return true; + } + + // do we need to open this file? + if (level >= file->fileLevel && + (file->mosaicLevel == PM_FPA_LEVEL_NONE || + (file->mosaicLevel != PM_FPA_LEVEL_NONE && level >= file->mosaicLevel))) { + if (!pmFPAfileOpen (file, view, config)) { + psError(PS_ERR_IO, false, "failed to open %s", file->filename); + return false; + } + } + + switch (file->type) { + case PM_FPA_FILE_IMAGE: + pmFPAviewWriteFitsImage(view, file, config); + psTrace ("pmFPAfile", 5, "wrote image %s (fpa: %p)\n", file->filename, file->fpa); + break; + case PM_FPA_FILE_MASK: + pmFPAviewWriteFitsMask(view, file, config); + psTrace ("pmFPAfile", 5, "wrote mask %s (fpa: %p)\n", file->filename, file->fpa); + break; + case PM_FPA_FILE_WEIGHT: + pmFPAviewWriteFitsWeight(view, file, config); + psTrace ("pmFPAfile", 5, "wrote weight %s (fpa: %p)\n", file->filename, file->fpa); + break; + case PM_FPA_FILE_HEADER: + // pmFPAviewWriteFitsWeight(view, file, config); + // psTrace ("pmFPAfile", 5, "wrote weight %s (fpa: %p)\n", file->filename, file->fpa); + psAbort ("no HEADER write functions defined"); + break; + case PM_FPA_FILE_FRINGE: + pmFPAviewWriteFitsImage (view, file, config); + psTrace ("pmFPAfile", 5, "wrote image %s (fpa: %p)\n", file->filename, file->fpa); + pmFPAviewWriteFitsTable(view, file, "FRINGE"); + psTrace ("pmFPAfile", 5, "wrote fringe table %s (fpa: %p)\n", file->filename, file->fpa); + break; + + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_CMF: + psTrace ("pmFPAfile", 5, "writing object %s (fpa: %p)\n", file->filename, file->fpa); + if (!pmFPAviewWriteObjects (view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write object %s", file->filename); + return false; + } + + break; + + case PM_FPA_FILE_PSF: + pmFPAviewWritePSFmodel (view, file, config); + psTrace ("pmFPAfile", 5, "wrote PSF %s (fpa: %p)\n", file->filename, file->fpa); + break; + + case PM_FPA_FILE_JPEG: + pmFPAviewWriteJPEG (view, file, config); + psTrace ("pmFPAfile", 5, "wrote JPEG %s (fpa: %p)\n", file->filename, file->fpa); + break; + + case PM_FPA_FILE_MANAPLOT: + pmFPAviewWriteMANAPLOT (view, file, config); + psTrace ("pmFPAfile", 5, "wrote MANAPLOT %s (fpa: %p)\n", file->filename, file->fpa); + break; + + case PM_FPA_FILE_KAPA: + pmFPAviewWriteSourcePlot (view, file, config); + psTrace ("pmFPAfile", 5, "wrote KAPA %s (fpa: %p)\n", file->filename, file->fpa); + break; + + default: + fprintf (stderr, "warning: type mismatch\n"); + return false; + } + return true; +} + +// create the data elements (headers, images) appropriate for this view +bool pmFPAfileCreate (pmFPAfile *file, const pmFPAview *view, const pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + // these are not error conditions; these are state tests + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip create for inactive file %s", file->name); + return true; + } + if (file->mode != PM_FPA_MODE_WRITE) { + psTrace("psModules.camera", 6, "skip create for non-write file %s", file->name); + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + // get the current level + pmFPALevel level = pmFPAviewLevel (view); + + // don't create the file if the src (FPA) is not defined + if (file->src == NULL) { + psTrace("psModules.camera", 6, "skip create for FPA without src FPA for %s", file->name); + return true; + } + + // do we need to write this file? + if (level != file->fileLevel || file->mosaicLevel != PM_FPA_LEVEL_NONE) { + psTrace("psModules.camera", 6, "skip creation of %s at this level %s: fileLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->fileLevel)); + return true; + } + + switch (file->type) { + case PM_FPA_FILE_IMAGE: + case PM_FPA_FILE_MASK: + case PM_FPA_FILE_WEIGHT: + case PM_FPA_FILE_FRINGE: { + // create FPA structure component based on view + psMetadata *format = file->format; // Camera format configuration + if (!format) { + format = config->format; + } + + pmFPA *nameSource = file->src; // Source of FPA.NAME + if (!nameSource) { + nameSource = file->fpa; + } + bool mdok; // Status of MD lookup + const char *fpaname = psMetadataLookupStr(&mdok, nameSource->concepts, "FPA.NAME"); // Name of FPA + + pmFPAAddSourceFromView(file->fpa, fpaname, view, format); + psTrace ("pmFPAfile", 5, "created fpa data elements for %s (fpa: %p)\n", file->name, file->fpa); + break; + } + case PM_FPA_FILE_HEADER: + psAbort ("Create not defined for HEADER"); + break; + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_CMF: + case PM_FPA_FILE_PSF: + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_KAPA: + case PM_FPA_FILE_MANAPLOT: + break; + + default: + psError(PS_ERR_IO, true, "Unsupported type for %s: %d", file->name, file->type); + return false; + } + return true; +} + +bool pmFPAfileClose (pmFPAfile *file, const pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(file, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + if (file->state & PM_FPA_STATE_INACTIVE) { + psTrace("psModules.camera", 6, "skip close for %s, files is inactive", file->name); + return true; + } + if (file->state == PM_FPA_STATE_CLOSED) { + return true; + } + + // an internal file should not be returned to here + if (file->mode == PM_FPA_MODE_INTERNAL) { + psError(PS_ERR_IO, true, "File is mode PM_FPA_MODE_INTERNAL"); + return false; + } + + // is current level == open level? + pmFPALevel level = pmFPAviewLevel (view); + if (file->fileLevel != level) { + psTrace("psModules.camera", 6, "skip closing of %s at this level %s: dataLevel is %s", + file->name, pmFPALevelToName(level), pmFPALevelToName(file->dataLevel)); + return true; + } + + // check if we are actually open + switch (file->type) { + // check the FITS types + case PM_FPA_FILE_IMAGE: + case PM_FPA_FILE_MASK: + case PM_FPA_FILE_WEIGHT: + case PM_FPA_FILE_HEADER: + case PM_FPA_FILE_FRINGE: + case PM_FPA_FILE_CMF: + psFitsClose (file->fits); + psTrace ("pmFPAfile", 5, "closing %s (type: %d)\n", file->filename, file->type); + file->fits = NULL; + file->phu = NULL; + file->header = NULL; + file->state = PM_FPA_STATE_CLOSED; + break; + + // ignore the TEXT types + case PM_FPA_FILE_SX: + case PM_FPA_FILE_RAW: + case PM_FPA_FILE_OBJ: + case PM_FPA_FILE_CMP: + case PM_FPA_FILE_PSF: + case PM_FPA_FILE_JPEG: + case PM_FPA_FILE_KAPA: + case PM_FPA_FILE_MANAPLOT: + break; + + default: + psError(PS_ERR_IO, true, "type mismatch: %d", file->type); + return false; + } + return true; +} + +// set the state of the specified pmFPAfile to active (state == true) or inactive +// if name is NULL, set the state for all pmFPAfiles +bool pmFPAfileActivate (psMetadata *files, bool state, char *name) +{ + PS_ASSERT_PTR_NON_NULL(files, false); + + if (!name) { + psMetadataItem *item = NULL; + psMetadataIterator *iter = psMetadataIteratorAlloc (files, PS_LIST_HEAD, NULL); + while ((item = psMetadataGetAndIncrement (iter)) != NULL) { + pmFPAfile *file = item->data.V; + if (state) { + file->state &= PS_NOT_U8(PM_FPA_STATE_INACTIVE); + } else { + file->state |= PM_FPA_STATE_INACTIVE; + } + } + psFree (iter); + return true; + } + + bool status = false; + pmFPAfile *file = psMetadataLookupPtr (&status, files, name); + if (!status) { + psTrace("psModules.camera", 6, "%s is not a defined IO file", name); + return false; + } + if (!file) { + psError(PS_ERR_IO, true, "file %s is NULL", name); + return false; + } + if (state) { + file->state &= PS_NOT_U8(PM_FPA_STATE_INACTIVE); + } else { + file->state |= PM_FPA_STATE_INACTIVE; + } + return true; +} + +// attempt create, read, write, close, or free pmFPAfiles available in files +// files are automatically opened before they are read +bool pmFPAfileIOChecks (pmConfig *config, const pmFPAview *view, pmFPAfilePlace place) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_PTR_NON_NULL(config->files, false); + PS_ASSERT_PTR_NON_NULL(view, false); + + psMetadata *files = config->files; + + // attempt to perform all create, read, write, close operations + psMetadataItem *item = NULL; + psMetadataIterator *iter = psMetadataIteratorAlloc (files, PS_LIST_HEAD, NULL); + while ((item = psMetadataGetAndIncrement (iter)) != NULL) { + pmFPAfile *file = item->data.V; + + switch (place) { + case PM_FPA_BEFORE: + if (!pmFPAfileOpen(file, view, config)) { + psError(PS_ERR_IO, false, "failed OPEN in FPA_BEFORE block for %s", file->name); + goto failure; + } + if (!pmFPAfileRead (file, view, config)) { + psError(PS_ERR_IO, false, "failed READ in FPA_BEFORE block for %s", file->name); + goto failure; + } + if (!pmFPAfileCreate(file, view, config)) { + psError(PS_ERR_IO, false, "failed CREATE in FPA_BEFORE block for %s", file->name); + goto failure; + } + if (!pmFPAfileBlank(file, view, config)) { + psError(PS_ERR_IO, false, "failed BLANK in FPA_BEFORE block for %s", file->name); + goto failure; + } + break; + case PM_FPA_AFTER: + if (!pmFPAfileWrite (file, view, config)) { + psError(PS_ERR_IO, false, "failed WRITE in FPA_AFTER block for %s", file->name); + goto failure; + } + if (!pmFPAfileClose(file, view)) { + psError(PS_ERR_IO, false, "failed CLOSE in FPA_AFTER block for %s", file->name); + goto failure; + } + break; + default: + psAbort("You can't get here"); + } + } + + // attempt to free data that is no longer needed + psMetadataIteratorSet (iter, PS_LIST_HEAD); + while ((item = psMetadataGetAndIncrement (iter)) != NULL) { + pmFPAfile *file = item->data.V; + + switch (place) { + case PM_FPA_BEFORE: + break; + case PM_FPA_AFTER: + if (!pmFPAfileFreeData(file, view)) { + if (!psMetadataRemoveKey(files, file->name)) { + psError(PS_ERR_IO, false, "failed to remove %s in FPA_AFTER block", file->name); + goto failure; + } + } + break; + default: + psAbort("You can't get here"); + } + } + psFree (iter); + return true; + +failure: + psFree (iter); + return false; +} + Index: /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAfileIO.h (revision 12167) @@ -0,0 +1,42 @@ +/* @file pmFPAview.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author EAM, IfA + * + * @version $Revision: 1.4 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-15 00:51:20 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_FILE_IO_H +#define PM_FPA_FILE_IO_H + +/// @addtogroup Camera Camera Layout +/// @{ + +// open the real file corresponding to the given pmFPAfile appropriate to the current view +bool pmFPAfileOpen (pmFPAfile *file, const pmFPAview *view, pmConfig *config); + +// read from the real file corresponding to the given pmFPAfile for the current view +bool pmFPAfileRead (pmFPAfile *file, const pmFPAview *view, pmConfig *config); + +bool pmFPAfileCreate (pmFPAfile *file, const pmFPAview *view, const pmConfig *config); + +// write to the real file corresponding to the given pmFPAfile for the current view +bool pmFPAfileWrite (pmFPAfile *file, const pmFPAview *view, pmConfig *config); + +// close the real file corresponding to the given pmFPAfile appropriate to the current view +bool pmFPAfileClose (pmFPAfile *file, const pmFPAview *view); + +// free the data at this level +bool pmFPAfileFreeData(pmFPAfile *file, const pmFPAview *view); + +// set the state of the specified pmFPAfile to active (state == true) or inactive +// if name is NULL, set the state for all pmFPAfiles +bool pmFPAfileActivate (psMetadata *files, bool state, char *name); + +// examine all pmFPAfiles listed in the files and perform the needed I/O operations (open,read,write,close) +bool pmFPAfileIOChecks (pmConfig *config, const pmFPAview *view, pmFPAfilePlace place); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/camera/pmFPAview.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAview.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAview.c (revision 12167) @@ -0,0 +1,300 @@ +/** @file pmFPAview.c + * + * @author EAM, IfA + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pslib.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmFPA.h" +#include "pmFPAview.h" + +static void pmFPAviewFree(pmFPAview *view) +{ + // No reason to keep this function, apart from the fact that it allows us to type the memBlock + return; +} + +pmFPAview *pmFPAviewAlloc(int nRows) +{ + pmFPAview *view = psAlloc(sizeof(pmFPAview)); + psMemSetDeallocator(view, (psFreeFunc) pmFPAviewFree); + + view->nRows = nRows; + pmFPAviewReset(view); + return view; +} + + +bool pmFPAviewReset(pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + + view->chip = -1; + view->cell = -1; + view->readout = -1; + view->iRows = 0; + return true; +} + + +pmFPALevel pmFPAviewLevel(const pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(view, PM_FPA_LEVEL_NONE); + + if (view->chip < 0) { + return PM_FPA_LEVEL_FPA; + } + if (view->cell < 0) { + return PM_FPA_LEVEL_CHIP; + } + if (view->readout < 0) { + return PM_FPA_LEVEL_CELL; + } + return PM_FPA_LEVEL_READOUT; +} + +pmChip *pmFPAviewThisChip(const pmFPAview *view, const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + PS_ASSERT_PTR_NON_NULL(fpa->chips, NULL); + + if (view->chip < 0) { + return NULL; + } + + if (view->chip >= fpa->chips->n) { + return NULL; + } + + pmChip *chip = fpa->chips->data[view->chip]; + return chip; +} + +pmChip *pmFPAviewNextChip(pmFPAview *view, const pmFPA *fpa, int nStep) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + view->cell = -1; + view->readout = -1; + view->iRows = 0; + + // if there are no available chips, return NULL + if (fpa->chips->n <= 0) { + view->chip = -1; + return NULL; + } + + // clean up < -1 values + if (view->chip < -1) { + view->chip = -1; + } + + // increment to the next chip + view->chip += nStep; + + // if we are at the end of the stack, return NULL + if (view->chip >= fpa->chips->n) { + view->chip = -1; + return NULL; + } + + // get the correct chip pointer + pmChip *chip = fpa->chips->data[view->chip]; + return (chip); +} + +pmCell *pmFPAviewThisCell(const pmFPAview *view, const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + if (view->cell < 0) { + return NULL; + } + + pmChip *chip = pmFPAviewThisChip (view, fpa); + PS_ASSERT_PTR_NON_NULL(chip, NULL); + + if (view->cell >= chip->cells->n) { + return NULL; + } + + pmCell *cell = chip->cells->data[view->cell]; + return cell; +} + +pmCell *pmFPAviewNextCell (pmFPAview *view, const pmFPA *fpa, int nStep) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + pmChip *chip = pmFPAviewThisChip (view, fpa); + PS_ASSERT_PTR_NON_NULL(chip, NULL); + + view->readout = -1; + view->iRows = 0; + + // if there are no available cells, return NULL + if (chip->cells->n <= 0) { + view->cell = -1; + return NULL; + } + + // clean up < -1 values + if (view->cell < -1) { + view->cell = -1; + } + + // increment to the next cell + view->cell += nStep; + + // if we are at the end of the stack, return NULL + if (view->cell >= chip->cells->n) { + view->cell = -1; + return NULL; + } + + // get the correct cell pointer + pmCell *cell = chip->cells->data[view->cell]; + return (cell); +} + +pmReadout *pmFPAviewThisReadout (const pmFPAview *view, const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + if (view->readout < 0) { + return NULL; + } + + pmCell *cell = pmFPAviewThisCell (view, fpa); + PS_ASSERT_PTR_NON_NULL(cell, NULL); + + if (view->readout >= cell->readouts->n) { + return NULL; + } + + pmReadout *readout = cell->readouts->data[view->readout]; + return readout; +} + +pmReadout *pmFPAviewNextReadout (pmFPAview *view, const pmFPA *fpa, int nStep) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + pmCell *cell = pmFPAviewThisCell (view, fpa); + PS_ASSERT_PTR_NON_NULL(cell, NULL); + + view->iRows = 0; + + // if there are no available cells, return NULL + if (cell->readouts->n <= 0) { + view->readout = -1; + return NULL; + } + + // clean up < -1 values + if (view->readout < -1) { + view->readout = -1; + } + + // increment to the next cell + view->readout += nStep; + + // if we are at the end of the stack, return NULL + if (view->readout >= cell->readouts->n) { + view->readout = -1; + return NULL; + } + + // get the correct cell pointer + pmReadout *readout = cell->readouts->data[view->readout]; + return (readout); +} + +pmHDU *pmFPAviewThisHDU(const pmFPAview *view, const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + // the HDU is attached to a cell, chip or fpa + // if this view has a -1 for the level which contains the hdu, + // there is no unambiguous HDU + + if (view->chip < 0) { + return pmHDUFromFPA (fpa); + } + if (view->cell < 0) { + return pmHDUFromChip (pmFPAviewThisChip (view, fpa)); + } + if (view->readout < 0) { + return pmHDUFromCell (pmFPAviewThisCell (view, fpa)); + } + return pmHDUFromReadout (pmFPAviewThisReadout (view, fpa)); +} + +pmHDU *pmFPAviewThisPHU(const pmFPAview *view, const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(view, NULL); + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + + // select the HDU which corresponds to the PHU containing this view + + pmHDU *hdu; + pmFPAview new; + pmChip *chip; + pmCell *cell; + + new = *view; + + if (view->chip < 0) { + hdu = pmHDUFromFPA (fpa); + if (!hdu) + return NULL; + if (hdu->blankPHU) + return hdu; + return NULL; + } + if (view->cell < 0) { + chip = pmFPAviewThisChip (view, fpa); + hdu = pmHDUFromChip (chip); + if (!hdu) + return NULL; + if (hdu->blankPHU) + return hdu; + new.chip = -1; + hdu = pmFPAviewThisPHU (&new, fpa); + return hdu; + } + if (view->readout < 0) { + cell = pmFPAviewThisCell (view, fpa); + hdu = pmHDUFromCell (cell); + if (!hdu) { + psAbort("a split readout is not covered by the current paradigm"); + } + if (hdu->blankPHU) + return hdu; + new.cell = -1; + hdu = pmFPAviewThisPHU (&new, fpa); + return hdu; + } + return NULL; +} Index: /branches/rel-1-1/psModules/src/camera/pmFPAview.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmFPAview.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmFPAview.h (revision 12167) @@ -0,0 +1,114 @@ +/* @file pmFPA.h + * @brief Tools to manipulate the FPA structure elements. + * + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FPA_VIEW_H +#define PM_FPA_VIEW_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" +#include "pmFPALevel.h" + +/// Identifier for FPA components +/// +/// This structure allows the identification of a single component of the focal plane hierarchy (or multiple, +/// if we consider selecting all those components below the selected component). Components are identified on +/// the basis of their chip, cell, readout index. An index of -1 means all components at that level. +/// Additionally, since readouts may be read piecemeal, there are additional indices for these. +typedef struct +{ + int chip; ///< Number of the chip, or -1 for all + int cell; ///< Number of the cell, or -1 for all + int readout; ///< Number of the readout, or -1 for all + int nRows; ///< Maximum number of rows per readout segment read, or 0 for all + int iRows; ///< Starting point for this read +} +pmFPAview; + +/// Allocator for pmFPAview +pmFPAview *pmFPAviewAlloc(int nRows ///< Maximum number of rows per readout segment read, or 0 for all + ); + +/// Reset a view to select all components +bool pmFPAviewReset(pmFPAview *view ///< View to reset + ); + +/// Determine the current view level +/// +/// Returns the level appropriate for the view +pmFPALevel pmFPAviewLevel(const pmFPAview *view ///< View to examine + ); + +// Lookups + +/// Return the currently selected chip for this view +/// +/// Returns NULL if the selection is not specific or invalid +pmChip *pmFPAviewThisChip(const pmFPAview *view, ///< Current view + const pmFPA *fpa ///< FPA containing chip + ); + +/// Return the currently selected cell for this view +/// +/// Returns NULL if the selection is not specific or invalid +pmCell *pmFPAviewThisCell(const pmFPAview *view, ///< Current view + const pmFPA *fpa ///< FPA containing cell + ); + +/// Return the currently selected readout for this view +/// +/// Returns NULL if the selection is not specific or invalid +pmReadout *pmFPAviewThisReadout(const pmFPAview *view, ///< Current view + const pmFPA *fpa ///< FPA containing readout + ); + +// Incrementors + +/// Advance view to the next chip +/// +/// Returns NULL if there is no next +pmChip *pmFPAviewNextChip(pmFPAview *view, ///< Current view + const pmFPA *fpa, ///< FPA containing chips + int nStep ///< Number of chips to increment + ); + +/// Advance view to the next cell +/// +/// Returns NULL if there is no next +pmCell *pmFPAviewNextCell(pmFPAview *view, ///< Current view + const pmFPA *fpa, ///< FPA containing cells + int nStep ///< Number of cells to increment + ); + +/// Advance view to the next readout +/// +/// Returns NULL if there is no next +pmReadout *pmFPAviewNextReadout(pmFPAview *view, ///< Current view + const pmFPA *fpa, ///< FPA containing readouts + int nStep ///< Number of readouts to increment + ); + +/// Return the HDU corresponding to the current view +/// +/// Uses the pmHDUFrom* functions, combined with the view. +pmHDU *pmFPAviewThisHDU(const pmFPAview *view, ///< Current view + const pmFPA *fpa ///< FPA for view + ); + +/// Return the blank Primary HDU corresponding to the current view, if any +/// +/// Similar to pmFPAviewThisHDU, except returns NULL if no HDU is found, or the HDU is not a blank Primary HDU +pmHDU *pmFPAviewThisPHU(const pmFPAview *view, ///< Current view + const pmFPA *fpa ///< FPA for view + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmHDU.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDU.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDU.c (revision 12167) @@ -0,0 +1,230 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include +#include "pmConfig.h" +#include "pmFPA.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static (private) functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Move to the appropriate extension in FITS file for HDU +static bool hduMove(pmHDU *hdu, // HDU with extname + psFits *fits // FITS file in which to move + ) +{ + // Deal with the PHU case + if (hdu->blankPHU || !hdu->extname) { + if (!psFitsMoveExtNum(fits, 0, false)) { + psError(PS_ERR_IO, false, "Unable to move to primary header!\n"); + return false; + } + return true; + } + + if (!psFitsMoveExtName(fits, hdu->extname)) { + psError(PS_ERR_IO, false, "Unable to move to extension %s\n", hdu->extname); + return false; + } + + return true; +} + +static void hduFree(pmHDU *hdu) +{ + psFree(hdu->extname); + psFree(hdu->format); + psFree(hdu->header); + psFree(hdu->images); + psFree(hdu->weights); + psFree(hdu->masks); +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +pmHDU *pmHDUAlloc(const char *extname) +{ + pmHDU *hdu = psAlloc(sizeof(pmHDU)); + psMemSetDeallocator(hdu, (psFreeFunc)hduFree); + + if (!extname || strlen(extname) == 0) { + hdu->blankPHU = true; + hdu->extname = NULL; + } else { + hdu->blankPHU = false; + hdu->extname = psStringCopy(extname); + } + hdu->format = NULL; + hdu->header = NULL; + hdu->images = NULL; + hdu->weights = NULL; + hdu->masks = NULL; + + return hdu; +} + +bool pmHDUReadHeader(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + // Move to the appropriate extension + psTrace("psModules.camera", 5, "Moving to extension %s...\n", hdu->extname); + if (!hduMove(hdu, fits)) { + return false; + } + + if (!hdu->header) { + psTrace("psModules.camera", 5, "Reading the header...\n"); + hdu->header = psFitsReadHeader(hdu->header, fits); + if (! hdu->header) { + psError(PS_ERR_IO, false, "Unable to read header for extension %s\n", hdu->extname); + return false; + } + } + + return true; +} + +// Read an HDU from a FITS file +// XXX: Add a region specifier? +bool hduRead(pmHDU *hdu, // HDU to write + psArray **images, // Images into which to read + psFits *fits // FITS file to read + ) +{ + assert(hdu); + assert(images); + assert(fits); + + // Read the header; includes the move + if (!pmHDUReadHeader(hdu, fits)) { + return false; + } + + if (hdu->blankPHU) { + // Done already! + return true; + } + + if (*images) { + psLogMsg(__func__, PS_LOG_WARN, "HDU %s has already been read --- overwriting.\n", hdu->extname); + psFree(*images); // Blow away anything existing + } + psTrace("psModules.camera", 5, "Reading the pixels...\n"); + *images = psFitsReadImageCube(fits, psRegionSet(0,0,0,0)); + if (!*images) { + psError(PS_ERR_IO, false, "Unable to read pixels for extension %s\n", hdu->extname); + return false; + } + return true; +} + +bool pmHDURead(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduRead(hdu, &hdu->images, fits); +} + +bool pmHDUReadMask(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduRead(hdu, &hdu->masks, fits); +} + +bool pmHDUReadWeight(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduRead(hdu, &hdu->weights, fits); +} + +// Write an HDU to a FITS file +static bool hduWrite(pmHDU *hdu, // HDU to write + psArray *images, // Images to write + psFits *fits // FITS file to which to write + ) +{ + assert(hdu); + assert(fits); + + psTrace("psModules.camera", 7, "Writing HDU %s\n", hdu->extname); + + if (!images && !hdu->header) { + psLogMsg(__func__, PS_LOG_WARN, "Nothing to write for HDU %s\n", hdu->extname); + return false; + } + + // Preserve the extension name, if it's the PHU + char *extname = hdu->extname; // The name of the extension + if (!extname && hdu->header) { + bool mdok = true; // Status of MD lookup + extname = psMetadataLookupStr(&mdok, hdu->header, "EXTNAME"); + if (!mdok || !extname || strlen(extname) == 0) { + extname = ""; + } + } + + // Make sure it's recognisable as what it's supposed to be + if (!hdu->header) { + hdu->header = psMetadataAlloc(); + } + if (!pmConfigConformHeader(hdu->header, hdu->format)) { + psError(PS_ERR_UNKNOWN, false, "Unable to conform header to format.\n"); + return false; + } + + // Only a header + if (!images && !psFitsWriteBlank(fits, hdu->header, extname)) { + psError(PS_ERR_IO, false, "Unable to write header for extension %s\n", extname); + return false; + } + + if (images) { + psTrace("psModules.camera", 9, "Writing pixels for %s\n", hdu->extname); + if (!psFitsWriteImageCube(fits, hdu->header, images, extname)) { + psError(PS_ERR_IO, false, "Unable to write image to extension %s\n", hdu->extname); + return false; + } + } + return true; +} + +// XXX: Add a region specifier? +bool pmHDUWrite(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduWrite(hdu, hdu->images, fits); +} + +bool pmHDUWriteMask(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduWrite(hdu, hdu->masks, fits); +} + +bool pmHDUWriteWeight(pmHDU *hdu, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(hdu, false); + PS_ASSERT_PTR_NON_NULL(fits, false); + + return hduWrite(hdu, hdu->weights, fits); +} Index: /branches/rel-1-1/psModules/src/camera/pmHDU.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDU.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDU.h (revision 12167) @@ -0,0 +1,82 @@ +/* @file pmHDU.h + * @brief Define a header data unit (from a FITS file), with functions to read and write + * + * @author Paul Price, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_HDU_H +#define PM_HDU_H + +/// @addtogroup Camera Camera Layout +/// @{ + +/// An instance of the FITS Header Data Unit +/// +/// Of course, it is not an exact replica of a FITS HDU --- they have no mask and weight data, but these are +/// stored here for convenience --- it keeps all the relevant data about the image in one place. +typedef struct +{ + psString extname; ///< The extension name + bool blankPHU; ///< Is this a blank FITS Primary Header Unit, i.e., no data? + psMetadata *format; ///< The camera format + psMetadata *header; ///< The FITS header, or NULL if primary for FITS; or section info + psArray *images; ///< The pixel data + psArray *weights; ///< The pixel data + psArray *masks; ///< The pixel data +} +pmHDU; + + +/// Allocator for pmHDU +pmHDU *pmHDUAlloc(const char *extname ///< Extension name, or NULL for PHU + ); + +/// Read the HDU header only +/// +/// Moves to the appropriate extension +bool pmHDUReadHeader(pmHDU *hdu, ///< HDU for which to read header + psFits *fits ///< FITS file from which to read + ); + +/// Read the HDU header and pixels +/// +/// Moves to the appropriate extension +bool pmHDURead(pmHDU *hdu, ///< HDU to read + psFits *fits ///< FITS file to read from + ); + +/// Read the HDU header and mask +/// +/// Moves to the appropriate extension +bool pmHDUReadMask(pmHDU *hdu, ///< HDU to read + psFits *fits ///< FITS file to read from + ); + +/// Read the HDU header and weight map +/// +/// Moves to the appropriate extension +bool pmHDUReadWeight(pmHDU *hdu, ///< HDU to read + psFits *fits ///< FITS file to read from + ); + +/// Write the HDU header and pixels +bool pmHDUWrite(pmHDU *hdu, ///< HDU to write + psFits *fits ///< FITS file to write to + ); + +/// Write the HDU header and mask +bool pmHDUWriteMask(pmHDU *hdu, ///< HDU to write + psFits *fits ///< FITS file to write to + ); + +/// Write the HDU header and weight map +bool pmHDUWriteWeight(pmHDU *hdu, ///< HDU to write + psFits *fits ///< FITS file to write to + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.c (revision 12167) @@ -0,0 +1,652 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmFPALevel.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" + +#include "pmHDUGenerate.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Add cells in a chip to a list +static bool addCellsFromChip(psList *list, // List of cells + const pmChip *chip // The chip from which to add cells + ) +{ + assert(list); + assert(chip); + + psArray *cells = chip->cells; // Array of cells + bool result = true; // Result of adding cells + for (int i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // A cell + if (!cell->hdu) { // Don't add cells that have their own HDU + result |= psListAdd(list, PS_LIST_TAIL, cell); + } + } + + return result; +} + +// Add cells in an FPA to a list +static bool addCellsFromFPA(psList *list, // List of cells + const pmFPA *fpa // The FPA from which to add cells + ) +{ + assert(list); + assert(fpa); + + psArray *chips = fpa->chips; // Array of chips + bool result = true; // Result of adding cells + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // A chip + if (! chip->hdu) { // Don't add chips that have their own HDU + result |= addCellsFromChip(list, chip); + } + } + + return result; +} + +// Get the maximum extent of the HDU from the trimsec and biassecs +static bool sizeHDU(int *xSize, int *ySize, // Size of HDU + psList *cells // List of cells + ) +{ + psListIterator *cellsIter = psListIteratorAlloc(cells, PS_LIST_HEAD, false); // Iterator for cells + pmCell *cell = NULL; // The cell from iteration + bool mdok = true; // Status of MD lookup + *xSize = 0; + *ySize = 0; + while ((cell = psListGetAndIncrement(cellsIter))) { + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (mdok && trimsec && !psRegionIsNaN(*trimsec)) { + *xSize = PS_MAX(trimsec->x1, *xSize); + *ySize = PS_MAX(trimsec->y1, *ySize); + } else { + psFree(cellsIter); + return false; + } + psList *biassecs = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.BIASSEC"); // Bias sections + if (mdok && biassecs) { + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, false); // Iterator + psRegion *biassec = NULL; // The bias section + while ((biassec = psListGetAndIncrement(biassecsIter))) { + if (!psRegionIsNaN(*biassec)) { + *xSize = PS_MAX(biassec->x1, *xSize); + *ySize = PS_MAX(biassec->y1, *ySize); + } else { + psFree(biassecsIter); + psFree(cellsIter); + return false; + } + } + psFree(biassecsIter); + } + } + psFree(cellsIter); + + return (*xSize != 0 && *ySize != 0); +} + + +static psRegion *sectionForImage(int *position, // Position on the output image, updated + const psImage *image, // Image containing the sizes and offsets + int readdir // Read direction, 1=rows, 2=cols + ) +{ + psRegion *region = NULL; // The region to return + switch (readdir) { + case 1: // Read direction is rows + region = psRegionAlloc(*position, *position + image->numCols, image->row0, + image->row0 + image->numRows); + *position += image->numCols; + break; + case 2: // Read direction is columns + region = psRegionAlloc(image->col0, image->col0 + image->numCols, *position, + *position + image->numRows); + *position += image->numRows; + break; + default: + psAbort("Shouldn't ever get here!\n"); + } + + return region; +} + +static bool doBiasSections(int *position, // Position on the output image, updated + int *readdir,// Read direction for cells + pmCell *cell // Cell + ) +{ + psMetadataItem *biassecItem = psMetadataLookup(cell->concepts, "CELL.BIASSEC"); // Bias sections + if (!biassecItem) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.BIASSEC has not been initialised in cell --- " + "ignored.\n"); + return false; + } + psFree(biassecItem->data.V); // Blow away the old list + psList *biassecs = psListAlloc(NULL); + biassecItem->data.V = biassecs; + + bool mdok = true; // Status of MD lookup + int cellreaddir = psMetadataLookupS32(&mdok, cell->concepts, "CELL.READDIR"); // Read direction + if (!mdok || (cellreaddir != 1 && cellreaddir != 2)) { + // Probably unnecessary, but just in case.... + psLogMsg(__func__, PS_LOG_WARN, "CELL.READDIR is not set in cell --- ignored.\n"); + return false; + } + if (*readdir == 0) { + *readdir = cellreaddir; + } else if (*readdir != cellreaddir) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.READDIR does not match read direction for HDU --- ignored.\n"); + return false; + } + + pmReadout *readout = cell->readouts->data[0]; // The first readout, as representative + psList *biases = readout->bias; // The bias images from the readout + + psListIterator *biasIter = psListIteratorAlloc(biases, PS_LIST_HEAD, true); // Iterator for biases + psImage *bias = NULL; // Bias image from iteration + while ((bias = psListGetAndIncrement(biasIter))) { + // Construct a region + psRegion *biassec = sectionForImage(position, bias, *readdir); + psListAdd(biassecs, PS_LIST_TAIL, biassec); + psFree(biassec); // Drop reference + } + psFree(biasIter); + + return true; +} + +// Generate CELL.TRIMSEC and CELL.BIASSEC for the cells +static bool generateTrimBias(psList *cells // List of cells below the HDU + ) +{ + pmCell *cell = NULL; // Cell from iteration + int numCells = cells->n; // Number of cells + int cellNum = 0; // The cell number + int position = 0; // Position on the image + bool mdok = true; // Status of MD lookup + int readdir = 0; // Read direction (1=rows, 2=cols) + + // First run through to do the LHS biases + psListIterator *cellsIter = psListIteratorAlloc(cells, PS_LIST_HEAD, false); // Iterator for cells + bool done = false; // Done with iteration (due to being halfway through)? + while ((cell = psListGetAndIncrement(cellsIter)) && !done) { + if (cellNum <= numCells/2 - 1) { + doBiasSections(&position, &readdir, cell); + cellNum++; + } else { + done = true; + } + } + + // Second run through to do the trim sections + psListIteratorSet(cellsIter, PS_LIST_HEAD); + while ((cell = psListGetAndIncrement(cellsIter))) { + psMetadataItem *trimsecItem = psMetadataLookup(cell->concepts, "CELL.TRIMSEC"); // Item with trimsec + if (!trimsecItem || trimsecItem->type != PS_DATA_REGION) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.TRIMSEC has not been initialised in cell --- " + "ignored.\n"); + continue; + } + psRegion *trimsec = trimsecItem->data.V; // Trim section + + int cellreaddir = psMetadataLookupS32(&mdok, cell->concepts, "CELL.READDIR"); // Read direction + if (!mdok || (cellreaddir != 1 && cellreaddir != 2)) { + // Probably unnecessary, but just in case.... + psLogMsg(__func__, PS_LOG_WARN, "CELL.READDIR is not set in cell --- ignored.\n"); + continue; + } + if (readdir == 0 && mdok && cellreaddir != 0) { + readdir = cellreaddir; + } else if (readdir != cellreaddir) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.READDIR for cells within the HDU do not match!\n"); + cellreaddir = readdir; + } + + pmReadout *readout = cell->readouts->data[0]; // The first readout, as representative + // The proper image, used to get the size + psImage *image = readout->image ? readout->image : (readout->mask ? readout->mask : readout->weight); + if (!image) { + continue; + } + if (readout->mask && + (readout->mask->numCols != image->numCols || readout->mask->numRows != image->numRows)) { + psLogMsg(__func__, PS_LOG_WARN, "Image and mask have different sizes (%dx%d vs %dx%d)!\n", + image->numCols, image->numRows, readout->mask->numCols, readout->mask->numRows); + } + if (readout->weight && + (readout->weight->numCols != image->numCols || readout->weight->numRows != image->numRows)) { + psLogMsg(__func__, PS_LOG_WARN, "Image and weight have different sizes (%dx%d vs %dx%d)!\n", + image->numCols, image->numRows, readout->weight->numCols, readout->weight->numRows); + } + // New reference + trimsec = sectionForImage(&position, image, cellreaddir); + psFree(trimsecItem->data.V); + trimsecItem->data.V = trimsec; + } + + // A final run through to do the RHS biases + psListIteratorSet(cellsIter, cellNum); + while ((cell = psListGetAndIncrement(cellsIter))) { + doBiasSections(&position, &readdir, cell); + } + + // Clean up + psFree(cellsIter); + + return (position > 0); +} + +// Check the type for a current image against a previous type +static psElemType checkTypes(psElemType previous, // Previously defined type, or 0 + psElemType current // Current type + ) +{ + if (previous == 0) { + return current; + } + + if (previous != current) { + psLogMsg(__func__, PS_LOG_WARN, "Images within the HDU are of different types " + "(%x vs %x) --- promoting\n", previous, current); + return PS_MAX(previous, current); + } + + return previous; +} + + +// Paste the source image into the target, according to the provided region. The source is then updated to +// reference the region within the target. +static psImage *pasteImage(psImage *target, // Target image, into which the paste is made + psImage *source,// Source image, from which the paste is made, and then changed + psRegion *region // Image section into which to paste + ) +{ + if (source->numCols != region->x1 - region->x0 || source->numRows != region->y1 - region->y0) { + psString regionString = psRegionToString(*region); + psLogMsg(__func__, PS_LOG_WARN, "Image size (%dx%d) does not match region (%s).\n", + source->numCols, source->numRows, regionString); + psFree(regionString); + } + psImageOverlaySection(target, source, region->x0, region->y0, "="); + + // Reference the HDU version, so that subsequent changes will touch the HDU + return psImageSubset(target, *region); +} + + +// Generate the HDU, given a list of cells below that HDU. This is the main engine function, that does all +// the work. +static bool generateHDU(pmHDU *hdu, // HDU to generate + psList *cells // List of cells + ) +{ + // Check the number of readouts is consistent within the HDU + int numReadouts = -1; // Number of readouts + psElemType imageType = 0; // Type of readout images + psElemType maskType = 0; // Type of readout masks + psElemType weightType = 0; // Type of readout weights + { + psListIterator *iter = psListIteratorAlloc(cells, PS_LIST_HEAD, false); // Iterator for cells + pmCell *cell = NULL; // The cell from iteration + while ((cell = psListGetAndIncrement(iter))) + { + psArray *readouts = cell->readouts; + if (numReadouts == -1) { + numReadouts = readouts->n; + } else if (readouts->n != numReadouts) { + psError(PS_ERR_IO, true, "Number of readouts doesn't match: %ld vs %d\n", readouts->n, + numReadouts); + return false; + } + for (int i = 0; i < numReadouts; i++) { + pmReadout *readout = readouts->data[i]; // The readout + if (!readout) { + continue; + } + + if (!hdu->images && readout->image) { + imageType = checkTypes(imageType, readout->image->type.type); + } + if (!hdu->masks && readout->mask) { + maskType = checkTypes(maskType, readout->mask->type.type); + } + if (!hdu->weights && readout->weight) { + weightType = checkTypes(weightType, readout->weight->type.type); + } + } + } + psFree(iter); + } + if (numReadouts == 0 || (imageType == 0 && maskType == 0 && weightType == 0)) { + // Nothing from which to create an HDU + psFree(cells); + return false; + } + + // Get the size of the HDU, either from existing trimsec and biassec, or generate these and try again + int xSize = 0, ySize = 0; // Size of HDU + if (!sizeHDU(&xSize, &ySize, cells) && !(generateTrimBias(cells) && sizeHDU(&xSize, &ySize, cells))) { + psError(PS_ERR_IO, true, "Unable to determine size of HDU!\n"); + return false; + } + + // Generate the HDU + if (imageType) { + hdu->images = psArrayAlloc(numReadouts); + for (int i = 0; i < numReadouts; i++) { + psImage *image = psImageAlloc(xSize, ySize, imageType); + psImageInit(image, 0.0); + hdu->images->data[i] = image; + } + } + if (maskType) { + hdu->masks = psArrayAlloc(numReadouts); + for (int i = 0; i < numReadouts; i++) { + psImage *mask = psImageAlloc(xSize, ySize, maskType); + psImageInit(mask, 0); + hdu->masks->data[i] = mask; + } + } + if (weightType) { + hdu->weights = psArrayAlloc(numReadouts); + for (int i = 0; i < numReadouts; i++) { + psImage *weight = psImageAlloc(xSize, ySize, weightType); + psImageInit(weight, 0.0); + hdu->weights->data[i] = weight; + } + } + + // Insert the pixels into the HDU + { + psListIterator *iter = psListIteratorAlloc(cells, PS_LIST_HEAD, false); // Iterator for cells + pmCell *cell = NULL; // The cell from iteration + bool mdok = true; // Result of MD lookup + while ((cell = psListGetAndIncrement(iter))) + { + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || !trimsec) { + psAbort("Shouldn't ever get here --- CELL.TRIMSEC should have been set above.\n"); + } + psList *biassecs = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.BIASSEC"); // Bias secionts + if (!mdok || !biassecs) { + psAbort("Shouldn't ever get here --- CELL.BIASSEC should have been set above.\n"); + } + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, false); // Iterator + + psArray *readouts = cell->readouts; // Array of readouts + psArray *hduImages = hdu->images; // Array of images in the HDU + psArray *hduMasks = hdu->masks; // Array of masks in the HDU + psArray *hduWeights = hdu->weights; // Array of weights in the HDU + for (int i = 0; i < readouts->n; i++) { + pmReadout *readout = readouts->data[i]; // The readout of interest + if (!readout) { + continue; + } + + if (readout->image) { + psImage *new = pasteImage(hduImages->data[i], readout->image, trimsec); + psFree(readout->image); + readout->image = new; + } + if (readout->mask) { + psImage *new = pasteImage(hduMasks->data[i], readout->mask, trimsec); + psFree(readout->mask); + readout->mask = new; + } + if (readout->weight) { + psImage *new = pasteImage(hduWeights->data[i], readout->weight, trimsec); + psFree(readout->weight); + readout->weight = new; + } + + if (biassecs->n != readout->bias->n) { + psLogMsg(__func__, PS_LOG_WARN, "Number of bias sections (%ld) and number of biases (%ld)" + " do not match.\n", biassecs->n, readout->bias->n); + } + psListIterator *biasIter = psListIteratorAlloc(readout->bias, PS_LIST_HEAD, false); // Iteratr + psImage *bias = NULL; // Bias image, from iteration + psListIteratorSet(biassecsIter, PS_LIST_HEAD); + psRegion *biassec = NULL; // Bias region, from iteration + psList *newBias = psListAlloc(NULL); // New list of bias images + while ((bias = psListGetAndIncrement(biasIter)) && + (biassec = psListGetAndIncrement(biassecsIter))) { + psImage *new = pasteImage(hduImages->data[i], bias, biassec); + psListAdd(newBias, PS_LIST_TAIL, new); + } + psFree(biasIter); + + // Add on the new list of bias images + psFree(readout->bias); + readout->bias = newBias; + } + psFree(biassecsIter); + } // Iterating over cells within the HDU + psFree(iter); + } + psFree(cells); + + return true; +} + +// Return the level that an extension applies to +static pmFPALevel extensionLevel(pmHDU *hdu // HDU to check + ) +{ + if (!hdu->format) { + psError(PS_ERR_UNEXPECTED_NULL, true, "HDU does not have a camera format.\n"); + return PM_FPA_LEVEL_NONE; + } + bool mdok = true; // Status of MD lookup + psMetadata *file = psMetadataLookupMetadata(&mdok, hdu->format, "FILE"); // File information for camera format + if (!mdok || !file) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Can't file FILE information for camera format " + "configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + psString extensions = psMetadataLookupStr(&mdok, file, "EXTENSIONS"); // Where the HDUs are + if (!mdok || !extensions || strlen(extensions) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Can't find EXTENSIONS in the FILE information of the camera " + "format configuration.\n"); + return PM_FPA_LEVEL_NONE; + } + if (strcasecmp(extensions, "CELL") == 0) { + return PM_FPA_LEVEL_CELL; + } + if (strcasecmp(extensions, "CHIP") == 0) { + return PM_FPA_LEVEL_CHIP; + } + if (strcasecmp(extensions, "FPA") == 0) { + return PM_FPA_LEVEL_FPA; + } + if (strcasecmp(extensions, "NONE") == 0) { + return PM_FPA_LEVEL_NONE; + } + // No idea what it is + psError(PS_ERR_IO, true, "EXTENSIONS (%s) in FILE information is not FPA, CHIP, CELL or NONE.\n", + extensions); + return PM_FPA_LEVEL_NONE; +} + +// Generate HDU for cells belonging to a chip --- just an iterator +static bool generateForCells(pmChip *chip // Chip for which to generate HDUs + ) +{ + psArray *cells = chip->cells; // Array of cells + bool status = true; // Status of HDU generation + for (long i = 0; i < cells->n; i++) { + status |= pmHDUGenerateForCell(cells->data[i]); + } + return status; +} + +// Generate HDU for chips belonging to an FPA --- just an iterator +static bool generateForChips(pmFPA *fpa // FPA for which to generate HDUs + ) +{ + psArray *chips = fpa->chips; // Array of chips + bool status = true; // Status of HDU generation + for (long i = 0; i < chips->n; i++) { + status |= pmHDUGenerateForChip(chips->data[i]); + } + return status; +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmHDUGenerateForCell(pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + + // Get the HDU and a list of cells below it + pmHDU *hdu = pmHDUFromCell(cell); // The HDU in the cell + if (!hdu) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Can't find an HDU for cell.\n"); + return false; + } + if (hdu->images) { + // It's already here! + return true; + } + + pmFPALevel extLevel = extensionLevel(hdu); + switch (extLevel) { + case PM_FPA_LEVEL_NONE: + case PM_FPA_LEVEL_CELL: { + psList *cells = psListAlloc(NULL); // List of cells below the HDU + + if (cell->hdu) { + psListAdd(cells, PS_LIST_TAIL, cell); + } else { + pmChip *chip = cell->parent; // The parent chip + if (chip->hdu) { + addCellsFromChip(cells, chip); + } else { + pmFPA *fpa = chip->parent; // The parent FPA + if (fpa->hdu) { + addCellsFromFPA(cells, fpa); + } + } + } + if (cells->n == 0) { + // Nothing to do + return true; + } + + return generateHDU(hdu, cells); + } + case PM_FPA_LEVEL_CHIP: + case PM_FPA_LEVEL_FPA: + return pmHDUGenerateForChip(cell->parent); + default: + psAbort("Shouldn't ever get here: check your camera format configuration.\n"); + } + return false; +} + +bool pmHDUGenerateForChip(pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + + // Get the HDU and a list of cells below it + pmHDU *hdu = pmHDUFromChip(chip); // The HDU in the chip + if (!hdu) { + // Nothing here; need to look further down + return generateForCells(chip); + } + if (hdu->images) { + // It's already here! + return true; + } + + pmFPALevel extLevel = extensionLevel(hdu); + switch (extLevel) { + case PM_FPA_LEVEL_NONE: + case PM_FPA_LEVEL_CELL: + // Work on lower levels + return generateForCells(chip); + case PM_FPA_LEVEL_CHIP: { + // Work on this level + psList *cells = psListAlloc(NULL); // List of cells below the HDU + if (chip->hdu) { + addCellsFromChip(cells, chip); + } else { + pmFPA *fpa = chip->parent; // The parent FPA + if (fpa->hdu) { + addCellsFromFPA(cells, fpa); + } + } + if (cells->n == 0) { + // Nothing to do + return true; + } + + return generateHDU(hdu, cells); + } + case PM_FPA_LEVEL_FPA: + // Work on higher levels + return pmHDUGenerateForFPA(chip->parent); + default: + psAbort("Shouldn't ever get here: check your camera format configuration.\n"); + } + return false; +} + + +bool pmHDUGenerateForFPA(pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + + // Get the HDU and a list of cells below it + pmHDU *hdu = pmHDUFromFPA(fpa); // The HDU in the FPA + if (!hdu) { + // Nothing here; need to look further down + return generateForChips(fpa); + } + if (hdu->images) { + // It's already here! + return true; + } + + pmFPALevel extLevel = extensionLevel(hdu); + switch (extLevel) { + case PM_FPA_LEVEL_NONE: + case PM_FPA_LEVEL_CELL: + case PM_FPA_LEVEL_CHIP: + // Work on lower levels + return generateForChips(fpa); + case PM_FPA_LEVEL_FPA: { + // Work on this level + psList *cells = psListAlloc(NULL); // List of cells below the HDU + if (fpa->hdu) { + addCellsFromFPA(cells, fpa); + } + if (cells->n == 0) { + // Nothing to do + return true; + } + + return generateHDU(hdu, cells); + } + default: + psAbort("Shouldn't ever get here: check your camera format configuration.\n"); + } + return false; +} Index: /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDUGenerate.h (revision 12167) @@ -0,0 +1,55 @@ +/* @file pmHDUGenerate.h + * @brief Generate HDU pixels from FPA components that have pixels + * + * @author Paul Price, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_HDU_GENERATE_H +#define PM_HDU_GENERATE_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" + +/// Generate an HDU (with CELL.TRIMSEC, CELL.BIASSEC and pixels) for a cell with pixels +/// +/// The write functions for the FPA hierarchy use pmHDUWrite, which assumes that the images in the readouts +/// are subimages of the pixels in the HDU structure. If this is not the case, the HDU pixels can be +/// generated using some simple assumptions. Splices the images and overscans together without regard for +/// CELL.X0 and CELL.Y0 (for a proper mosaic, see pmFPAMosaic), though it should respect CELL.READDIR (so that +/// the bias and trim sections match properly). A warning may be generated after running this function if the +/// bias and trim sections are specified in the camera format by default values rather than in the header. +/// Failure of this function is often due to a bad camera format file. +bool pmHDUGenerateForCell(pmCell *cell ///< The cell for which to generate an HDU + ); + +/// Generate an HDU (with CELL.TRIMSEC, CELL.BIASSEC and pixels) for a cell with pixels +/// +/// The write functions for the FPA hierarchy use pmHDUWrite, which assumes that the images in the readouts +/// are subimages of the pixels in the HDU structure. If this is not the case, the HDU pixels can be +/// generated using some simple assumptions. Splices the images and overscans together without regard for +/// CELL.X0 and CELL.Y0 (for a proper mosaic, see pmFPAMosaic), though it should respect CELL.READDIR (so that +/// the bias and trim sections match properly). A warning may be generated after running this function if the +/// bias and trim sections are specified in the camera format by default values rather than in the header. +/// Failure of this function is often due to a bad camera format file. +bool pmHDUGenerateForChip(pmChip *chip ///< The chip for which to generate an HDU + ); + +// Generate an HDU (with CELL.TRIMSEC, CELL.BIASSEC and pixels) from an FPA with pixels +/// +/// The write functions for the FPA hierarchy use pmHDUWrite, which assumes that the images in the readouts +/// are subimages of the pixels in the HDU structure. If this is not the case, the HDU pixels can be +/// generated using some simple assumptions. Splices the images and overscans together without regard for +/// CELL.X0 and CELL.Y0 (for a proper mosaic, see pmFPAMosaic), though it should respect CELL.READDIR (so that +/// the bias and trim sections match properly). A warning may be generated after running this function if the +/// bias and trim sections are specified in the camera format by default values rather than in the header. +/// Failure of this function is often due to a bad camera format file. +bool pmHDUGenerateForFPA(pmFPA *fpa ///< The fpa for which to generate an HDU + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/camera/pmHDUUtils.c =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDUUtils.c (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDUUtils.c (revision 12167) @@ -0,0 +1,150 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" + + +pmHDU *pmHDUFromFPA(const pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, NULL); + return fpa->hdu; +} + +pmHDU *pmHDUFromChip(const pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip, NULL); + + pmHDU *hdu = chip->hdu; // The HDU information + if (!hdu) { + hdu = pmHDUFromFPA(chip->parent); // Grab HDU info from the FPA + } + + return hdu; +} + +pmHDU *pmHDUFromCell(const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, NULL); + + pmHDU *hdu = cell->hdu; // The HDU information + if (!hdu) { + hdu = pmHDUFromChip(cell->parent); // Grab HDU info from the chip + } + + return hdu; +} + +pmHDU *pmHDUFromReadout(const pmReadout *readout) +{ + PS_ASSERT_PTR_NON_NULL(readout, NULL); + + pmCell *cell = readout->parent; // cell containing this readout; + pmHDU *hdu = pmHDUFromCell(cell); + return hdu; +} + +// Get the lowest HDU +pmHDU *pmHDUGetLowest(const pmFPA *fpa, const pmChip *chip, const pmCell *cell) +{ + pmHDU *hdu = NULL; // The HDU that's at the lowest level + if (cell) { + hdu = pmHDUFromCell(cell); + } else if (chip) { + hdu = pmHDUFromChip(chip); + } else if (fpa) { + hdu = pmHDUFromFPA(fpa); + } + + return hdu; +} + +// Get the highest HDU +pmHDU *pmHDUGetHighest(const pmFPA *fpa, const pmChip *chip, const pmCell *cell) +{ + pmHDU *hdu = NULL; // The HDU that's at the highest level + if (fpa) { + hdu = pmHDUFromFPA(fpa); + } + if (!hdu && chip) { + hdu = pmHDUFromChip(chip); + } + if (!hdu && cell) { + hdu = pmHDUFromCell(cell); + } + + return hdu; +} + +// Print spaces to indent +#define INDENT(FILE, LEVEL) \ +{ \ + for (int i = 0; i < (LEVEL); i++) { \ + fprintf(FILE, " "); \ + } \ +} + +void pmHDUPrint(FILE *fd, const pmHDU *hdu, int level, bool header) +{ + PS_ASSERT_PTR_NON_NULL(hdu,); + + INDENT(fd, level); + if (hdu->blankPHU) { + fprintf(fd, "HDU: (PHU)\n"); + } else { + fprintf(fd, "HDU: %s\n", hdu->extname); + } + + INDENT(fd, level + 1); + fprintf(fd, "Format: %p\n", hdu->format); + if (header) { + INDENT(fd, level + 1); + if (hdu->header) { + fprintf(fd, "Header:\n"); + psMetadataPrint(fd, hdu->header, level + 2); + } else { + fprintf(fd, "No header.\n"); + } + } + + INDENT(fd, level + 1); + if (hdu->images) { + fprintf(fd, "Images:\n"); + for (long i = 0; i < hdu->images->n; i++) { + psImage *image = hdu->images->data[i]; // Image of interest + INDENT(fd, level + 2); + fprintf(fd, "%ld: %dx%d\n", i, image->numCols, image->numRows); + } + } else { + fprintf(fd, "NO images.\n"); + } + + INDENT(fd, level + 1); + if (hdu->masks) { + fprintf(fd, "Masks:\n"); + for (long i = 0; i < hdu->masks->n; i++) { + psImage *mask = hdu->masks->data[i]; // Mask of interest + INDENT(fd, level + 2); + fprintf(fd, "%ld: %dx%d\n", i, mask->numCols, mask->numRows); + } + } else { + fprintf(fd, "NO masks.\n"); + } + + INDENT(fd, level + 1); + if (hdu->weights) { + fprintf(fd, "Weights:\n"); + for (long i = 0; i < hdu->masks->n; i++) { + psImage *weight = hdu->weights->data[i]; // Weight image of interest + INDENT(fd, level + 2); + fprintf(fd, "%ld: %dx%d\n", i, weight->numCols, weight->numRows); + } + } else { + fprintf(fd, "NO weights.\n"); + } + + return; +} Index: /branches/rel-1-1/psModules/src/camera/pmHDUUtils.h =================================================================== --- /branches/rel-1-1/psModules/src/camera/pmHDUUtils.h (revision 12167) +++ /branches/rel-1-1/psModules/src/camera/pmHDUUtils.h (revision 12167) @@ -0,0 +1,61 @@ +/* @file pmHDUUtils.h + * @brief Utility functions for working with an HDU + * + * @author Paul Price, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_HDU_UTILS_H +#define PM_HDU_UTILS_H + +/// @addtogroup Camera Camera Layout +/// @{ + +#include "pmFPA.h" +#include "pmHDU.h" + +/// Get the lowest HDU in the hierarchy +/// +/// The lowest HDU in the hierarchy will be the one with the actual pixels (if all levels are supplied). +pmHDU *pmHDUGetLowest(const pmFPA *fpa, ///< The FPA + const pmChip *chip, ///< The chip, or NULL + const pmCell *cell ///< The cell, or NULL + ); + +/// Get the highest HDU in the hierarchy +/// +/// The highest HDU in the hierarchy will be the PHU (might get NULL if not all levels are supplied) +pmHDU *pmHDUGetHighest(const pmFPA *fpa, ///< The FPA + const pmChip *chip, ///< The chip, or NULL + const pmCell *cell ///< The cell, or NULL + ); + +/// Given an FPA, return the HDU (or NULL if all HDUs reside below the FPA) +pmHDU *pmHDUFromFPA(const pmFPA *fpa ///< FPA for which to find HDU + ); + +/// Given a chip, return the HDU (or NULL if it resides below the chip) +pmHDU *pmHDUFromChip(const pmChip *chip ///< Chip for which to find HDU + ); + +/// Given a cell, return the HDU +pmHDU *pmHDUFromCell(const pmCell *cell ///< Cell for which to find HDU + ); + +/// Given a readout, return the HDU +pmHDU *pmHDUFromReadout(const pmReadout *readout ///< Readout for which to find HDU + ); + +/// Print details about an HDU +/// +/// This is intended for testing or development use. +void pmHDUPrint(FILE *fd, ///< File descriptor to which to print + const pmHDU *hdu, ///< HDU to print + int level, ///< Level at which to print + bool header ///< Print header? + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/concepts/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/concepts/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo Index: /branches/rel-1-1/psModules/src/concepts/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/concepts/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/Makefile.am (revision 12167) @@ -0,0 +1,23 @@ +noinst_LTLIBRARIES = libpsmodulesconcepts.la + +libpsmodulesconcepts_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) +libpsmodulesconcepts_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulesconcepts_la_SOURCES = \ + pmConcepts.c \ + pmConceptsAverage.c \ + pmConceptsRead.c \ + pmConceptsWrite.c \ + pmConceptsStandard.c \ + pmConceptsPhotcode.c \ + pmConceptsUpdate.c + +pkginclude_HEADERS = \ + pmConcepts.h \ + pmConceptsAverage.h \ + pmConceptsRead.h \ + pmConceptsWrite.h \ + pmConceptsStandard.h \ + pmConceptsPhotcode.h \ + pmConceptsUpdate.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/concepts/pmConcepts.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConcepts.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConcepts.c (revision 12167) @@ -0,0 +1,900 @@ +// XXX *REALLY* need generic "concept update" and "concept read" functions that handles the type transparently + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConcepts.h" +#include "pmConceptsRead.h" +#include "pmConceptsWrite.h" +#include "pmConceptsStandard.h" +#include "pmConceptsUpdate.h" + +static bool conceptsInitialised = false;// Have concepts been read? +static psMetadata *conceptsFPA = NULL; // Known concepts for FPA +static psMetadata *conceptsChip = NULL; // Known concepts for chip +static psMetadata *conceptsCell = NULL; // Known concepts for cell + +// Free a concept +static void conceptSpecFree(pmConceptSpec *spec) +{ + psFree(spec->blank); +} + +pmConceptSpec *pmConceptSpecAlloc(psMetadataItem *blank, pmConceptParseFunc parse, + pmConceptFormatFunc format) +{ + pmConceptSpec *spec = psAlloc(sizeof(pmConceptSpec)); + psMemSetDeallocator(spec, (psFreeFunc)conceptSpecFree); + + spec->blank = psMemIncrRefCounter(blank); + spec->parse = parse; + spec->format = format; + + return spec; +} + +psList *pmConceptsList(pmFPALevel level) +{ + if (!conceptsInitialised) { + pmConceptsInit(); + } + + // Get the appropriate concepts + psMetadata *concepts = NULL; // Metadata of concepts specs + switch (level) { + case PM_FPA_LEVEL_FPA: + concepts = conceptsFPA; + break; + case PM_FPA_LEVEL_CHIP: + concepts = conceptsChip; + break; + case PM_FPA_LEVEL_CELL: + concepts = conceptsCell; + break; + default: + psError(PS_ERR_IO, true, "Invalid concept level provided: %d\n", level); + return NULL; + } + + // Pull out the names + psList *list = psListAlloc(NULL); // List of concepts' names + psMetadataIterator *iter = psMetadataIteratorAlloc(concepts, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + psListAdd(list, PS_LIST_TAIL, item->name); + } + psFree(iter); + return list; +} + + +psList *psMetadataKeys(psMetadata *md) +{ + psList *list = psListAlloc(NULL); // List with the keys + psMetadataIterator *iter = psMetadataIteratorAlloc(md, PS_LIST_HEAD, false); + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + psListAdd(list, PS_LIST_TAIL, item->name); + } + return list; +} + + + +bool pmConceptRegister(psMetadataItem *blank, pmConceptParseFunc parse, + pmConceptFormatFunc format, pmFPALevel level) +{ + PS_ASSERT_PTR_NON_NULL(blank, false); + + if (!conceptsInitialised) { + pmConceptsInit(); + } + + pmConceptSpec *spec = pmConceptSpecAlloc(blank, parse, format); // The concept specification + psMetadata **target = NULL; // The metadata of known concepts to write to + switch (level) { + case PM_FPA_LEVEL_FPA: + target = &conceptsFPA; + break; + case PM_FPA_LEVEL_CHIP: + target = &conceptsChip; + break; + case PM_FPA_LEVEL_CELL: + target = &conceptsCell; + break; + default: + psError(PS_ERR_IO, true, "Invalid concept level provided: %d\n", level); + psFree(spec); + return false; + } + + psMetadataAdd(*target, PS_LIST_TAIL, blank->name, PS_DATA_UNKNOWN | PS_META_REPLACE, + "Concepts specification", spec); + psFree(spec); // Drop reference + + return true; +} + + +// Set all registered concepts to blank value for the specified level +static bool conceptsBlank(psMetadata **specs, // One of the concepts specifications + psMetadata *target // Place to install the concepts + ) +{ + assert(specs); + assert(target); + + if (!conceptsInitialised) { + pmConceptsInit(); + } + psMetadataIterator *specsIter = psMetadataIteratorAlloc(*specs, PS_LIST_HEAD, NULL); // Iterator on specs + psMetadataItem *specItem = NULL; // Item from the specs metadata + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + psTrace("psModules.concepts", 9, "Blanking %s...\n", specItem->name); + pmConceptSpec *spec = specItem->data.V; // The specification + psMetadataItem *blank = spec->blank; // The concept + psMetadataItem *copy = NULL; // Copy of the blank concept + // Trap the lists, which can't be copied in the ordinary way without a warning + if (blank->type == PS_DATA_LIST) { + copy = psMetadataItemAllocPtr(blank->name, PS_DATA_LIST, blank->comment, blank->data.V); + } else { + copy = psMetadataItemCopy(blank); + } + if (!psMetadataAddItem(target, copy, PS_LIST_TAIL, PS_META_REPLACE)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to add blank version of concept %s\n", blank->name); + } + psFree(copy); // Drop reference + } + psFree(specsIter); + + return true; +} + + + +// Read all registered concepts for the specified level +static bool conceptsRead(psMetadata **specs, // One of the concepts specifications + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell, // The cell + unsigned int *read, // What's already been read + pmConceptSource source, // The source of the concepts to read + psDB *db, // Database handle + psMetadata *target // Place into which to read the concepts + ) +{ + assert(specs); + assert(read); + assert(target); + + if (!conceptsInitialised) { + pmConceptsInit(); + } + + bool success = true; // Success in reading concepts? + if (source & PM_CONCEPT_SOURCE_CELLS && !(*read & PM_CONCEPT_SOURCE_CELLS) && cell) { + if (p_pmConceptsReadFromCells(target, *specs, cell)) { + *read |= PM_CONCEPT_SOURCE_CELLS; + } else { + psError(PS_ERR_UNKNOWN, false, "Error reading concepts from camera configuration.\n"); + success = false; + } + } + + if (source & PM_CONCEPT_SOURCE_DEFAULTS && !(*read & PM_CONCEPT_SOURCE_DEFAULTS)) { + if (p_pmConceptsReadFromDefaults(target, *specs, fpa, chip, cell)) { + *read |= PM_CONCEPT_SOURCE_DEFAULTS; + } else { + psError(PS_ERR_UNKNOWN, false, "Error reading concepts from defaults.\n"); + success = false; + } + } + + if (source & PM_CONCEPT_SOURCE_PHU && !(*read & PM_CONCEPT_SOURCE_PHU)) { + if (!p_pmConceptsReadFromHeader(target, *specs, fpa, chip, cell)) { + psError(PS_ERR_UNKNOWN, false, "Error reading concepts from header.\n"); + success = false; + } + } + + if (source & PM_CONCEPT_SOURCE_HEADER && !(*read & PM_CONCEPT_SOURCE_HEADER)) { + if (p_pmConceptsReadFromHeader(target, *specs, fpa, chip, cell)) { + *read |= PM_CONCEPT_SOURCE_HEADER; + } else { + psError(PS_ERR_UNKNOWN, false, "Error reading concepts from header.\n"); + success = false; + } + } + + #ifdef HAVE_PSDB + if (source & PM_CONCEPT_SOURCE_DATABASE && !(*read & PM_CONCEPT_SOURCE_DATABASE)) { + if (p_pmConceptsReadFromDatabase(target, *specs, fpa, chip, cell, db)) { + *read |= PM_CONCEPT_SOURCE_DATABASE; + } else { + psError(PS_ERR_UNKNOWN, false, "Error reading concepts from database.\n"); + success = false; + } + } + #endif + + pmConceptsUpdate(fpa, chip, cell); + + return success; +} + +// Write all registered concepts for the specified level +static bool conceptsWrite(psMetadata **specs, // One of the concepts specifications + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell, // The cell + pmConceptSource source, // The source of the concepts to write + psDB *db, // Database handle + const psMetadata *concepts // The concepts to write out + ) +{ + assert(specs); + assert(concepts); + + if (!conceptsInitialised) { + pmConceptsInit(); + } + + psTrace("psModules.concepts", 3, "Writing concepts (%p %p %p): %d\n", fpa, chip, cell, source); + + if (source & PM_CONCEPT_SOURCE_CELLS) { + p_pmConceptsWriteToCells(*specs, cell, concepts); + } + if (source & PM_CONCEPT_SOURCE_DEFAULTS) { + p_pmConceptsWriteToDefaults(*specs, fpa, chip, cell, concepts); + } + if (source & (PM_CONCEPT_SOURCE_PHU | PM_CONCEPT_SOURCE_HEADER)) { + p_pmConceptsWriteToHeader(*specs, fpa, chip, cell, concepts); + } + if (source & PM_CONCEPT_SOURCE_DATABASE) { + p_pmConceptsWriteToDatabase(*specs, fpa, chip, cell, db, concepts); + } + + return true; +} + + +bool pmConceptsRead(pmFPA *fpa, pmChip *chip, pmCell *cell, pmConceptSource source, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + bool success = conceptsRead(&conceptsFPA, fpa, chip, cell, &fpa->conceptsRead, source, db, fpa->concepts); + if (chip) { + success &= conceptsRead(&conceptsChip, fpa, chip, cell, &chip->conceptsRead, source, db, chip->concepts); + } + if (cell) { + success &= conceptsRead(&conceptsCell, fpa, chip, cell, &cell->conceptsRead, source, db, cell->concepts); + } + + return success; +} + + +bool pmConceptsBlankFPA(pmFPA *fpa) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + psTrace("psModules.concepts", 5, "Blanking FPA concepts: %p %p\n", conceptsFPA, fpa->concepts); + return conceptsBlank(&conceptsFPA, fpa->concepts); +} + + +bool pmConceptsReadFPA(pmFPA *fpa, pmConceptSource source, bool propagateDown, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + psTrace("psModules.concepts", 5, "Reading FPA concepts: %p %p\n", conceptsFPA, fpa->concepts); + bool success = conceptsRead(&conceptsFPA, fpa, NULL, NULL, &fpa->conceptsRead, source, db, fpa->concepts); + if (propagateDown) { + psArray *chips = fpa->chips; // Array of chips + for (long i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (chip) { + success &= pmConceptsReadChip(chip, source, false, true, db); + } + } + } + + return success; +} + +bool pmConceptsWriteFPA(const pmFPA *fpa, pmConceptSource source, bool propagateDown, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + psTrace("psModules.concepts", 5, "Writing FPA concepts: %p %p\n", conceptsFPA, fpa->concepts); + bool success = conceptsWrite(&conceptsFPA, fpa, NULL, NULL, source, db, fpa->concepts); + if (propagateDown) { + psArray *chips = fpa->chips; // Array of chips + for (long i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + if (chip && !chip->hdu) { + success &= pmConceptsWriteChip(chip, source, false, true, db); + } + } + } + return success; +} + +bool pmConceptsBlankChip(pmChip *chip) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + psTrace("psModules.concepts", 5, "Blanking chip concepts: %p %p\n", conceptsChip, chip->concepts); + return conceptsBlank(&conceptsChip, chip->concepts); +} + +bool pmConceptsReadChip(pmChip *chip, pmConceptSource source, bool propagateUp, + bool propagateDown, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + psTrace("psModules.concepts", 5, "Reading chip concepts: %p %p\n", conceptsChip, chip->concepts); + pmFPA *fpa = chip->parent; // FPA to which the chip belongs + bool success = conceptsRead(&conceptsChip, fpa, chip, NULL, &chip->conceptsRead, source, db, + chip->concepts); + if (propagateUp) { + success &= conceptsRead(&conceptsFPA, fpa, chip, NULL, &fpa->conceptsRead, source, db, fpa->concepts); + } + if (propagateDown) { + psArray *cells = chip->cells; // Array of cells + for (long i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + if (cell) { + success &= pmConceptsReadCell(cell, source, false, db); + } + } + } + return success; +} + +bool pmConceptsWriteChip(const pmChip *chip, pmConceptSource source, bool propagateUp, + bool propagateDown, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(chip, false); + psTrace("psModules.concepts", 5, "Writing chip concepts: %p %p\n", conceptsChip, chip->concepts); + pmFPA *fpa = chip->parent; // FPA to which the chip belongs + bool success = conceptsWrite(&conceptsChip, fpa, chip, NULL, source, db, chip->concepts); + if (propagateUp && !fpa->hdu) { + success &= conceptsWrite(&conceptsFPA, fpa, chip, NULL, source, db, fpa->concepts); + } + if (propagateDown) { + psArray *cells = chip->cells; // Array of cells + for (long i = 0; i < cells->n; i++) { + pmCell *cell = cells->data[i]; // Cell of interest + if (cell && !cell->hdu) { + success &= pmConceptsWriteCell(cell, source, false, db); + } + } + } + return success; +} + +bool pmConceptsBlankCell(pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + psTrace("psModules.concepts", 5, "Blanking cell concepts: %p %p\n", conceptsCell, cell->concepts); + return conceptsBlank(&conceptsCell, cell->concepts); +} + +bool pmConceptsReadCell(pmCell *cell, pmConceptSource source, bool propagateUp, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + psTrace("psModules.concepts", 5, "Reading cell concepts: %p %p\n", conceptsCell, cell->concepts); + pmChip *chip = cell->parent; // Chip to which the cell belongs + pmFPA *fpa = chip->parent; // FPA to which the chip belongs + + bool success = conceptsRead(&conceptsCell, fpa, chip, cell, &cell->conceptsRead, source, db, + cell->concepts); + if (propagateUp) { + success &= conceptsRead(&conceptsChip, fpa, chip, cell, &chip->conceptsRead, source, db, + chip->concepts); + success &= conceptsRead(&conceptsFPA, fpa, chip, cell, &fpa->conceptsRead, source, db, + fpa->concepts); + } + + return success; +} + +bool pmConceptsWriteCell(const pmCell *cell, pmConceptSource source, bool propagateUp, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + psTrace("psModules.concepts", 5, "Writing cell concepts: %p %p\n", conceptsCell, cell->concepts); + pmChip *chip = cell->parent; // Chip to which the cell belongs + pmFPA *fpa = chip->parent; // FPA to which the chip belongs + + bool success = conceptsWrite(&conceptsCell, fpa, chip, cell, source, db, cell->concepts); + if (propagateUp) { + if (!chip->hdu) { + success &= conceptsWrite(&conceptsChip, fpa, chip, cell, source, db, chip->concepts); + if (!fpa->hdu) { + success &= conceptsWrite(&conceptsFPA, fpa, chip, cell, source, db, fpa->concepts); + } + } + } + + return success; +} + + +bool pmConceptsInit(void) +{ + conceptsInitialised = true; + + p_psMemAllocatePersistent(true); + + bool init = false; // Did we initialise anything? + if (! conceptsFPA) { + conceptsFPA = psMetadataAlloc(); + init = true; + + // Install the standard concepts + + #if 0 + // FPA.NAME + { + psMetadataItem *fpaName = psMetadataItemAllocStr("FPA.NAME", "Name of FPA", ""); + pmConceptRegister(fpaName, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaName); + } + #endif + + // FPA.TELESCOPE + { + psMetadataItem *fpaTelescope = psMetadataItemAllocStr("FPA.TELESCOPE", "Camera used", ""); + pmConceptRegister(fpaTelescope, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaTelescope); + } + + // FPA.INSTRUMENT + { + psMetadataItem *fpaInstrument = psMetadataItemAllocStr("FPA.INSTRUMENT", "Camera used", ""); + pmConceptRegister(fpaInstrument, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaInstrument); + } + + // FPA.DETECTOR + { + psMetadataItem *fpaDetector = psMetadataItemAllocStr("FPA.DETECTOR", "Detector used", ""); + pmConceptRegister(fpaDetector, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaDetector); + } + + // FPA.CAMERA + // XXX keep or deprecate? + { + psMetadataItem *fpaCamera = psMetadataItemAllocStr("FPA.CAMERA", "Camera used", ""); + pmConceptRegister(fpaCamera, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaCamera); + } + + // FPA.FOCUS + { + psMetadataItem *fpaFocus = psMetadataItemAllocF32("FPA.FOCUS", "Telescope focus", NAN); + pmConceptRegister(fpaFocus, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaFocus); + } + + // FPA.AIRMASS + { + psMetadataItem *fpaAirmass = psMetadataItemAllocF32("FPA.AIRMASS", "Airmass at boresight", NAN); + pmConceptRegister(fpaAirmass, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaAirmass); + } + + // FPA.FILTERID + { + psMetadataItem *fpaFilterid = psMetadataItemAllocStr("FPA.FILTERID", + "Filter used (parsed, abstract name) ", ""); + pmConceptRegister(fpaFilterid, (pmConceptParseFunc)p_pmConceptParse_FPA_FILTER, + (pmConceptFormatFunc)p_pmConceptFormat_FPA_FILTER, PM_FPA_LEVEL_FPA); + psFree(fpaFilterid); + } + + // FPA.FILTER + { + psMetadataItem *fpaFilter = psMetadataItemAllocStr("FPA.FILTER", "Filter used", ""); + pmConceptRegister(fpaFilter, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaFilter); + } + + // FPA.POSANGLE + { + psMetadataItem *fpaPosangle = psMetadataItemAllocF32("FPA.POSANGLE", + "Position angle of instrument", NAN); + pmConceptRegister(fpaPosangle, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaPosangle); + } + + // FPA.RADECSYS + { + psMetadataItem *fpaRadecsys = psMetadataItemAllocStr("FPA.RADECSYS", + "Celestial coordinate system", ""); + pmConceptRegister(fpaRadecsys, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaRadecsys); + } + + // FPA.RA + { + psMetadataItem *fpaRa = psMetadataItemAllocF64("FPA.RA", "Right Ascension of boresight", NAN); + pmConceptRegister(fpaRa, (pmConceptParseFunc)p_pmConceptParse_FPA_Coords, + (pmConceptFormatFunc)p_pmConceptFormat_FPA_Coords, PM_FPA_LEVEL_FPA); + psFree(fpaRa); + } + + // FPA.DEC + { + psMetadataItem *fpaDec = psMetadataItemAllocF64("FPA.DEC", "Declination of boresight", NAN); + pmConceptRegister(fpaDec, (pmConceptParseFunc)p_pmConceptParse_FPA_Coords, + (pmConceptFormatFunc)p_pmConceptFormat_FPA_Coords, PM_FPA_LEVEL_FPA); + psFree(fpaDec); + } + + // FPA.OBSTYPE + { + psMetadataItem *fpaObstype = psMetadataItemAllocStr("FPA.OBSTYPE", "Type of observation", ""); + pmConceptRegister(fpaObstype, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaObstype); + } + + // FPA.OBJECT + { + psMetadataItem *fpaObject = psMetadataItemAllocStr("FPA.OBJECT", "Object of observation", ""); + pmConceptRegister(fpaObject, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaObject); + } + + // FPA.ALT + { + psMetadataItem *fpaAlt = psMetadataItemAllocF64("FPA.ALT", "Altitude of telescope", NAN); + pmConceptRegister(fpaAlt, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaAlt); + } + + // FPA.AZ + { + psMetadataItem *fpaAz = psMetadataItemAllocF64("FPA.AZ", "Azimuth of telescope", NAN); + pmConceptRegister(fpaAz, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaAz); + } + + // FPA.TIMESYS + { + psMetadataItem *fpaTimesys = psMetadataItemAllocS32("FPA.TIMESYS", "Time system", -1); + pmConceptRegister(fpaTimesys, (pmConceptParseFunc)p_pmConceptParse_TIMESYS, + (pmConceptFormatFunc)p_pmConceptFormat_TIMESYS, PM_FPA_LEVEL_FPA); + psFree(fpaTimesys); + } + + // FPA.TIME + { + psTime *time = psTimeAlloc(PS_TIME_TAI); // Blank time + // Not particularly distinguishing, but should be good enough + time->sec = 0; + time->nsec = 0; + psMetadataItem *fpaTime = psMetadataItemAlloc("FPA.TIME", PS_DATA_TIME, + "Time of exposure", time); + psFree(time); + pmConceptRegister(fpaTime, (pmConceptParseFunc)p_pmConceptParse_TIME, + (pmConceptFormatFunc)p_pmConceptFormat_TIME, PM_FPA_LEVEL_FPA); + psFree(fpaTime); + } + + // FPA.TEMP + { + psMetadataItem *fpaTemp = psMetadataItemAllocF32("FPA.TEMP", "Temperature of focal plane", NAN); + pmConceptRegister(fpaTemp, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaTemp); + } + + // FPA.EXPOSURE + { + psMetadataItem *fpaExposure = psMetadataItemAllocF32("FPA.EXPOSURE", + "Exposure time (sec)", NAN); + pmConceptRegister(fpaExposure, NULL, NULL, PM_FPA_LEVEL_FPA); + psFree(fpaExposure); + } + + // Done with FPA level concepts + } + if (! conceptsChip) { + conceptsChip = psMetadataAlloc(); + init = true; + + // Install the standard concepts + + // CHIP.XPARITY + { + psMetadataItem *chipXparity = psMetadataItemAllocS32("CHIP.XPARITY", + "Orientation in x compared to the rest of the FPA", 0); + pmConceptRegister(chipXparity, NULL, NULL, PM_FPA_LEVEL_CHIP); + psFree(chipXparity); + } + + // CHIP.YPARITY + { + psMetadataItem *chipYparity = psMetadataItemAllocS32("CHIP.YPARITY", + "Orientation in y compared to the rest of the FPA", 0); + pmConceptRegister(chipYparity, NULL, NULL, PM_FPA_LEVEL_CHIP); + psFree(chipYparity); + } + + // CHIP.X0 + { + psMetadataItem *chipX0 = psMetadataItemAllocS32("CHIP.X0", "Position of (0,0) on the FPA", 0); + pmConceptRegister(chipX0, (pmConceptParseFunc)p_pmConceptParse_Positions, + (pmConceptFormatFunc)p_pmConceptFormat_Positions, PM_FPA_LEVEL_CHIP); + psFree(chipX0); + } + + // CHIP.Y0 + { + psMetadataItem *chipY0 = psMetadataItemAllocS32("CHIP.Y0", "Position of (0,0) on the FPA", 0); + pmConceptRegister(chipY0, (pmConceptParseFunc)p_pmConceptParse_Positions, + (pmConceptFormatFunc)p_pmConceptFormat_Positions, PM_FPA_LEVEL_CHIP); + psFree(chipY0); + } + + // CHIP.XSIZE + { + psMetadataItem *chipXsize = psMetadataItemAllocS32("CHIP.XSIZE", "Size of chip (pixels)", 0); + pmConceptRegister(chipXsize, NULL, NULL, PM_FPA_LEVEL_CHIP); + psFree(chipXsize); + } + + // CHIP.YSIZE + { + psMetadataItem *chipYsize = psMetadataItemAllocS32("CHIP.YSIZE", "Size of chip (pixels)", 0); + pmConceptRegister(chipYsize, NULL, NULL, PM_FPA_LEVEL_CHIP); + psFree(chipYsize); + } + + // CHIP.TEMP + { + psMetadataItem *chipTemp = psMetadataItemAllocF32("CHIP.TEMP", "Temperature of chip", NAN); + pmConceptRegister(chipTemp, NULL, NULL, PM_FPA_LEVEL_CHIP); + psFree(chipTemp); + } + + // Done with chip level concepts + } + if (! conceptsCell) { + conceptsCell = psMetadataAlloc(); + init = true; + + // Install the standard concepts + + // CELL.GAIN + { + psMetadataItem *cellGain = psMetadataItemAllocF32("CELL.GAIN", "CCD gain (e/count)", NAN); + pmConceptRegister(cellGain, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellGain); + } + + // CELL.READNOISE + { + psMetadataItem *cellReadnoise = psMetadataItemAllocF32("CELL.READNOISE", + "CCD read noise (e)", NAN); + pmConceptRegister(cellReadnoise, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellReadnoise); + } + + // CELL.SATURATION + { + psMetadataItem *cellSaturation = psMetadataItemAllocF32("CELL.SATURATION", + "Saturation level (counts)", NAN); + pmConceptRegister(cellSaturation, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellSaturation); + } + + // CELL.BAD + { + psMetadataItem *cellBad = psMetadataItemAllocF32("CELL.BAD", "Bad level (counts)", NAN); + pmConceptRegister(cellBad, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellBad); + } + + // CELL.XPARITY + { + psMetadataItem *cellXparity = psMetadataItemAllocS32("CELL.XPARITY", + "Orientation in x compared to the rest of the chip", 0); + pmConceptRegister(cellXparity, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellXparity); + } + + // CELL.YPARITY + { + psMetadataItem *cellYparity = psMetadataItemAllocS32("CELL.YPARITY", + "Orientation in y compared to the rest of the chip", 0); + pmConceptRegister(cellYparity, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellYparity); + } + + // CELL.READDIR + { + psMetadataItem *cellReaddir = psMetadataItemAllocS32("CELL.READDIR", + "Read direction, rows=1, cols=2", 0); + pmConceptRegister(cellReaddir, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellReaddir); + } + + + // These (CELL.EXPOSURE and CELL.DARKTIME) used to be READOUT.EXPOSURE and READOUT.DARKTIME, but that + // doesn't really make sense at the moment. Maybe we need to add a "parent" link to the readouts. + // But then how are the exposure times REALLY derived? They're not in the FITS headers, because a + // readout is a plane in a 3D image. We'll have to dream up some additional suffix to specify these, + // but for now.... + + // CELL.EXPOSURE + { + psMetadataItem *cellExposure = psMetadataItemAllocF32("CELL.EXPOSURE", + "Exposure time (sec)", NAN); + pmConceptRegister(cellExposure, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellExposure); + } + + // CELL.DARKTIME + { + psMetadataItem *cellDarktime = psMetadataItemAllocF32("CELL.DARKTIME", + "Time since flush (sec)", NAN); + pmConceptRegister(cellDarktime, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellDarktime); + } + + // CELL.TRIMSEC + { + psRegion *trimsec = psAlloc(sizeof(psRegion)); // Blank trimsec + trimsec->x0 = trimsec->y0 = trimsec->x1 = trimsec->y1 = NAN; + psMetadataItem *cellTrimsec = psMetadataItemAllocPtr("CELL.TRIMSEC", PS_DATA_REGION, + "Trim section", trimsec); + psFree(trimsec); + pmConceptRegister(cellTrimsec, (pmConceptParseFunc)p_pmConceptParse_CELL_TRIMSEC, + (pmConceptFormatFunc)p_pmConceptFormat_CELL_TRIMSEC, PM_FPA_LEVEL_CELL); + psFree(cellTrimsec); + } + + // CELL.BIASSEC + { + psList *biassecs = psListAlloc(NULL); // Blank biassecs + psMetadataItem *cellBiassec = psMetadataItemAllocPtr("CELL.BIASSEC", PS_DATA_LIST, + "Bias sections", biassecs); + psFree(biassecs); + pmConceptRegister(cellBiassec, (pmConceptParseFunc)p_pmConceptParse_CELL_BIASSEC, + (pmConceptFormatFunc)p_pmConceptFormat_CELL_BIASSEC, PM_FPA_LEVEL_CELL); + psFree(cellBiassec); + } + + // CELL.XBIN + { + psMetadataItem *cellXbin = psMetadataItemAllocS32("CELL.XBIN", "Binning in x", 0); + pmConceptRegister(cellXbin, (pmConceptParseFunc)p_pmConceptParse_CELL_Binning, + (pmConceptFormatFunc)p_pmConceptFormat_CELL_XBIN, PM_FPA_LEVEL_CELL); + psFree(cellXbin); + } + + // CELL.YBIN + { + psMetadataItem *cellYbin = psMetadataItemAllocS32("CELL.YBIN", "Binning in y", 0); + pmConceptRegister(cellYbin, (pmConceptParseFunc)p_pmConceptParse_CELL_Binning, + (pmConceptFormatFunc)p_pmConceptFormat_CELL_YBIN, PM_FPA_LEVEL_CELL); + psFree(cellYbin); + } + + // CELL.TIMESYS + { + psMetadataItem *cellTimesys = psMetadataItemAllocS32("CELL.TIMESYS", "Time system", -1); + pmConceptRegister(cellTimesys, (pmConceptParseFunc)p_pmConceptParse_TIMESYS, + (pmConceptFormatFunc)p_pmConceptFormat_TIMESYS, PM_FPA_LEVEL_CELL); + psFree(cellTimesys); + } + + // CELL.TIME + { + psTime *time = psTimeAlloc(PS_TIME_TAI); // Blank time + // Not particularly distinguishing, but should be good enough + time->sec = 0; + time->nsec = 0; + psMetadataItem *cellTime = psMetadataItemAlloc("CELL.TIME", PS_DATA_TIME, + "Time of exposure", time); + psFree(time); + pmConceptRegister(cellTime, (pmConceptParseFunc)p_pmConceptParse_TIME, + (pmConceptFormatFunc)p_pmConceptFormat_TIME, PM_FPA_LEVEL_CELL); + psFree(cellTime); + } + + // CELL.X0 + { + psMetadataItem *cellX0 = psMetadataItemAllocS32("CELL.X0", "Position of (0,0) on the chip", 0); + pmConceptRegister(cellX0, (pmConceptParseFunc)p_pmConceptParse_Positions, + (pmConceptFormatFunc)p_pmConceptFormat_Positions, PM_FPA_LEVEL_CELL); + psFree(cellX0); + } + + // CELL.Y0 + { + psMetadataItem *cellY0 = psMetadataItemAllocS32("CELL.Y0", "Position of (0,0) on the chip", 0); + pmConceptRegister(cellY0, (pmConceptParseFunc)p_pmConceptParse_Positions, + (pmConceptFormatFunc)p_pmConceptFormat_Positions, PM_FPA_LEVEL_CELL); + psFree(cellY0); + } + + // CELL.XSIZE + { + psMetadataItem *cellXsize = psMetadataItemAllocS32("CELL.XSIZE", "Size of cell (pixels)", 0); + pmConceptRegister(cellXsize, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellXsize); + } + + // CELL.YSIZE + { + psMetadataItem *cellYsize = psMetadataItemAllocS32("CELL.YSIZE", "Size of cell (pixels)", 0); + pmConceptRegister(cellYsize, NULL, NULL, PM_FPA_LEVEL_CELL); + psFree(cellYsize); + } + } + + p_psMemAllocatePersistent(false); + + return init; +} + +void pmConceptsDone(void) +{ + psFree(conceptsFPA); + conceptsFPA = NULL; + psFree(conceptsChip); + conceptsChip = NULL; + psFree(conceptsCell); + conceptsCell = NULL; + + conceptsInitialised = false; +} + + +bool pmFPACopyConcepts(pmFPA *target, const pmFPA *source) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(source, false); + + // Copy FPA concepts + target->concepts = psMetadataCopy(target->concepts, source->concepts); + + // Copy chip concepts + psArray *targetChips = target->chips; // Chips in target + psArray *sourceChips = source->chips; // Chips in source + if (targetChips->n != sourceChips->n) { + psError(PS_ERR_IO, true, "Number of chips in target (%ld) and source (%ld) differ --- unable to copy " + "concepts.\n", targetChips->n, sourceChips->n); + return false; + } + for (int i = 0; i < targetChips->n; i++) { + pmChip *targetChip = targetChips->data[i]; // Target chip of interest + pmChip *sourceChip = sourceChips->data[i]; // Source chip of interest + if (! targetChip || ! sourceChip) { + continue; + } + targetChip->concepts = psMetadataCopy(targetChip->concepts, sourceChip->concepts); + + // Copy cell concepts + psArray *targetCells = targetChip->cells; // Cells in target + psArray *sourceCells = sourceChip->cells; // Cells in source + if (targetCells->n != sourceCells->n) { + psError(PS_ERR_IO, true, "Number of cells in target (%ld) and source (%ld) differ for chip %d ---" + " unable to copy concepts.\n", targetCells->n, sourceCells->n, i); + return false; + } + for (int j = 0; j < targetCells->n; j++) { + pmCell *targetCell = targetCells->data[j]; // Target chip of interest + pmCell *sourceCell = sourceCells->data[j]; // Source chip of interest + if (! targetCell || ! sourceCell) { + continue; + } + targetCell->concepts = psMetadataCopy(targetCell->concepts, sourceCell->concepts); + } + } + + return true; +} Index: /branches/rel-1-1/psModules/src/concepts/pmConcepts.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConcepts.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConcepts.h (revision 12167) @@ -0,0 +1,196 @@ +/* @file pmConcepts.h + * @brief Top-level functions for defining, registering, reading and writing concepts + * + * @author Paul Price, IfA + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-12 22:22:15 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_H +#define PM_CONCEPTS_H + +/// @addtogroup Concepts Data Abstraction Concepts +/// @{ + +#include +#include "pmFPA.h" +#include "pmFPALevel.h" + +/// Source for concepts when reading and writing. +/// +/// Since some sources become available at different times from others, we need to provide some specificity to +/// reading and writing concepts (or we're forced to wait until everything's available, which we don't want to +/// do). Concepts may be read from or written to multiple sources at once by OR-ing them. +typedef enum { + PM_CONCEPT_SOURCE_NONE = 0x00, ///< No concepts + PM_CONCEPT_SOURCE_CELLS = 0x01, ///< Concept comes from the camera information + PM_CONCEPT_SOURCE_DEFAULTS = 0x02, ///< Concept comes from defaults + PM_CONCEPT_SOURCE_PHU = 0x04, ///< Concept comes from PHU + PM_CONCEPT_SOURCE_HEADER = 0x08, ///< Concept comes from FITS header + PM_CONCEPT_SOURCE_DATABASE = 0x10, ///< Concept comes from database + PM_CONCEPT_SOURCE_ALL = 0xff ///< All concepts +} pmConceptSource; + +/// Function to call to parse a concept once it has been read +typedef psMetadataItem* (*pmConceptParseFunc)(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern for parsing + pmConceptSource source, ///< Source of concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Function to call to format a concept for writing +typedef psMetadataItem* (*pmConceptFormatFunc)(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source of concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// A "concept" specification +/// +/// Defines the name, default comment, blank value, and functions to parse (after reading) and format (before +/// writing) the concept. +typedef struct +{ + psMetadataItem *blank; ///< Blank value of concept; also contains the name and comment + pmConceptParseFunc parse; ///< Function to call to read the concept + pmConceptFormatFunc format; ///< Function to call to write the concept +} +pmConceptSpec; + +/// Allocator for pmConceptSpec +pmConceptSpec *pmConceptSpecAlloc(psMetadataItem *blank, ///< Blank value; contains the name + pmConceptParseFunc parse, ///< Function to call to parse the concept + pmConceptFormatFunc format ///< Function to call to format the concept + ); + +/// Register a new concept for parsing and formatting +/// +/// Defines a new concept, based on the blank value (with name and default comment), and functions to parse +/// and format the concept. The new concept is registered at the specified level (FPA, chip or cell). If the +/// parse function is NULL, then a default parse function is used, which performs minimal parsing. Similarly +/// for the format function. +bool pmConceptRegister(psMetadataItem *blank, ///< Blank value; contains the name and default comment + pmConceptParseFunc parse, ///< Function to call to parse the concept, or NULL + pmConceptFormatFunc format, ///< Function to call to format the concept, or NULL + pmFPALevel level ///< Level at which to store concept in the FPA hierarchy + ); + +/// Get a list of defined concepts for a particular level. +psList *pmConceptsList(pmFPALevel level); + +/// Read the concepts for the given set of fpa, chip, cell +/// +/// Attempts to read as many concepts as possible from the specified source for the specified FPA, chip and +/// cell. That is, it will read chip- and cell-level concepts in addition to fpa-level concepts, if the chip +/// and cell are provided. +bool pmConceptsRead(pmFPA *fpa, ///< FPA for which to read concepts + pmChip *chip, ///< Chip for which to read concepts, or NULL + pmCell *cell, ///< Cell for which to read concepts, or NULL + pmConceptSource source, ///< The source of the concepts to read + psDB *db ///< Database handle + ); + +/// Set the concepts within the FPA to the blank value +bool pmConceptsBlankFPA(pmFPA *fpa ///< FPA for which to set blank concepts + ); + +/// Read concepts for an FPA; optionally, read concepts at all lower levels. +/// +/// Once concepts should be available for reading at the FPA-level, this function attempts to read the +/// concepts from the specified source. It also allows concepts to be read at lower levels by iterating over +/// the components. +bool pmConceptsReadFPA(pmFPA *fpa, ///< FPA for which to read concepts + pmConceptSource source, ///< Source for concepts + bool propagateDown, ///< Propagate to lower levels? + psDB *db ///< Database handle + ); + +/// Write concepts for an FPA; optionally, write concepts at all lower levels. +/// +/// This function writes all concepts for the FPA to the specified "source". It also allows concepts to be +/// written for all lower levels by iterating over the components. +bool pmConceptsWriteFPA(const pmFPA *fpa, ///< FPA for which to write concepts + pmConceptSource source, ///< Source for concepts + bool propagateDown, ///< Propagate to lower levels? + psDB *db ///< Database handle + ); + +/// Set the concepts within the chip to the blank value +bool pmConceptsBlankChip(pmChip *chip ///< FPA for which to set blank concepts + ); + +/// Read concepts for a chip; optionally, read concepts at the FPA and cell levels. +/// +/// Once concepts should be available for reading at the FPA-level, this function attempts to read the +/// concepts from the specified source. It also allows concepts to be read at the fpa level (through the +/// parent), and the cell level by iterating over the components. +bool pmConceptsReadChip(pmChip *chip, ///< Chip for which to read concepts + pmConceptSource source, ///< Source for concepts + bool propagateUp, ///< Propagate to higher levels? + bool propagateDown, ///< Propagate to lower levels? + psDB *db ///< Database handle + ); + +/// Write concepts for a chip; optionally, write concepts at the FPA and cell levels. +/// +/// This function writes all concepts for the chip to the specified "source". It also allows concepts to be +/// written for the FPA, and the cell level by iterating over the components. +bool pmConceptsWriteChip(const pmChip *chip, ///< Chip for which to write concepts + pmConceptSource source, ///< Source for concepts + bool propagateUp,///< Propagate to higher levels? + bool propagateDown, ///< Propagate to lower levels? + psDB *db ///< Database handle + ); + +/// Set the concepts within the cell to the blank value +bool pmConceptsBlankCell(pmCell *cell ///< Cell for which to set blank concepts + ); + +/// Read concepts for a cell; optionally, read concepts for the parents. +/// +/// Once concepts should be available for reading at the FPA-level, this function attempts to read the +/// concepts from the specified source. It also allows concepts to be read at upper levels through the +/// parents (note, it would not read concepts for all chips, but only the parent of this cell). +bool pmConceptsReadCell(pmCell *cell, ///< Cell for which to read concepts + pmConceptSource source, ///< Source for concepts + bool propagateUp, ///< Propagate to higher levels? + psDB *db ///< Database handle + ); + +/// Write concepts for a cell; optionally, write concepts for the parents. +/// +/// This function writes all concepts for the chip to the specified "source". It also allows concepts to be +/// written for the upper levels through the parents (note, it would not write concepts for all chips, but +/// only the parent of this cell). +bool pmConceptsWriteCell(const pmCell *cell, ///< FPA for which to write concepts + pmConceptSource source, ///< Source for concepts + bool propagateUp, ///< Propagate to higher levels? + psDB *db ///< Database handle + ); + +/// Initialise the concepts system. +/// +/// Register the standard concepts, so that concepts may be read and written. This function is called +/// automatically the first time the concepts functions are used. +bool pmConceptsInit(void); + +/// Signifies that the user is done with the concepts system. +/// +/// Frees the registered concepts so there is no memory leak when the user checks "persistent" memory. +void pmConceptsDone(void); + +/// Copy all the concepts within an FPA to another FPA +/// +/// Iterates over all components of the FPA, and copies the concepts metadata from the source to the target. +bool pmFPACopyConcepts(pmFPA *target, ///< The target FPA + const pmFPA *source ///< The source FPA + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.c (revision 12167) @@ -0,0 +1,135 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "pmConcepts.h" +#include "pmFPA.h" + +#include "pmConceptsAverage.h" + + +// Update a metadata entry directly +#define MD_UPDATE(MD, NAME, TYPE, VALUE) \ +{ \ + psMetadataItem *item = psMetadataLookup(MD, NAME); \ + item->data.TYPE = VALUE; \ +} + + +// Set a variety of concepts in a cell by averaging over several +bool pmConceptsAverageCells(pmCell *target, psList *sources, psRegion *trimsec, psRegion *biassec) +{ + PS_ASSERT_PTR_NON_NULL(target, false); + PS_ASSERT_PTR_NON_NULL(sources, false); + PS_ASSERT_INT_POSITIVE(sources->n, false); + + bool success = true; // Result of setting everything + float gain = 0.0; // Gain + float readnoise = 0.0; // Read noise + float saturation = INFINITY; // Saturation level + float bad = -INFINITY; // Bad level + float exposure = 0.0; // Exposure time + float darktime = 0.0; // Dark time + double time = 0.0; // Time of observation + psTimeType timeSys = 0; // Time system + int readdir = 0; // Cell read direction + int xBin = 0, yBin = 0; // Binning + + int nCells = 0; // Number of cells; + psListIterator *sourcesIter = psListIteratorAlloc(sources, PS_LIST_HEAD, false); // Iterator for sources + pmCell *cell = NULL; // Source cell from iteration + while ((cell = psListGetAndIncrement(sourcesIter))) { + if (!cell) { + continue; + } + + nCells++; + gain += psMetadataLookupF32(NULL, cell->concepts, "CELL.GAIN"); + readnoise += psMetadataLookupF32(NULL, cell->concepts, "CELL.READNOISE"); + exposure += psMetadataLookupF32(NULL, cell->concepts, "CELL.EXPOSURE"); + darktime += psMetadataLookupF32(NULL, cell->concepts, "CELL.DARKTIME"); + psTime *cellTime = psMetadataLookupPtr(NULL, cell->concepts, "CELL.TIME"); + time += psTimeToMJD(cellTime); + if (nCells == 1) { + timeSys = psMetadataLookupS32(NULL, cell->concepts, "CELL.TIMESYS"); + readdir = psMetadataLookupS32(NULL, cell->concepts, "CELL.READDIR"); + xBin = psMetadataLookupS32(NULL, cell->concepts, "CELL.XBIN"); + yBin = psMetadataLookupS32(NULL, cell->concepts, "CELL.YBIN"); + } else { + if (timeSys != psMetadataLookupS32(NULL, cell->concepts, "CELL.TIMESYS")) { + psLogMsg(__func__, PS_LOG_ERROR, "Differing time systems in use: %d vs %d\n", timeSys, + psMetadataLookupS32(NULL, cell->concepts, "CELL.TIMESYS")); + success = false; + } + if (readdir != psMetadataLookupS32(NULL, cell->concepts, "CELL.READDIR")) { + psLogMsg(__func__, PS_LOG_ERROR, "Differing cell read directions in use: %d vs %d\n", readdir, + psMetadataLookupS32(NULL, cell->concepts, "CELL.READDIR")); + success = false; + } + if (xBin != psMetadataLookupS32(NULL, cell->concepts, "CELL.XBIN")) { + psLogMsg(__func__, PS_LOG_ERROR, "Differing cell x binnings in use: %d vs %d\n", xBin, + psMetadataLookupS32(NULL, cell->concepts, "CELL.XBIN")); + success = false; + } + if (yBin != psMetadataLookupS32(NULL, cell->concepts, "CELL.YBIN")) { + psLogMsg(__func__, PS_LOG_ERROR, "Differing cell y binnings in use: %d vs %d\n", yBin, + psMetadataLookupS32(NULL, cell->concepts, "CELL.YBIN")); + success = false; + } + } + + float cellSaturation = psMetadataLookupF32(NULL, cell->concepts, "CELL.SATURATION"); + if (cellSaturation < saturation) { + saturation = cellSaturation; + } + float cellBad = psMetadataLookupF32(NULL, cell->concepts, "CELL.BAD"); + if (cellBad > bad) { + bad = cellBad; + } + } + psFree(sourcesIter); + + gain /= (float)nCells; + readnoise /= (float)nCells; + exposure /= (float)nCells; + darktime /= (float)nCells; + time /= (double)nCells; + + MD_UPDATE(target->concepts, "CELL.GAIN", F32, gain); + MD_UPDATE(target->concepts, "CELL.READNOISE", F32, readnoise); + MD_UPDATE(target->concepts, "CELL.SATURATION", F32, saturation); + MD_UPDATE(target->concepts, "CELL.BAD", F32, bad); + MD_UPDATE(target->concepts, "CELL.EXPOSURE", F32, exposure); + MD_UPDATE(target->concepts, "CELL.DARKTIME", F32, darktime); + MD_UPDATE(target->concepts, "CELL.TIMESYS", S32, timeSys); + MD_UPDATE(target->concepts, "CELL.READDIR", S32, readdir); + MD_UPDATE(target->concepts, "CELL.XBIN", S32, xBin); + MD_UPDATE(target->concepts, "CELL.YBIN", S32, yBin); + + // CELL.TIME needs special care + { + psMetadataItem *timeItem = psMetadataLookup(target->concepts, "CELL.TIME"); + psFree(timeItem->data.V); + timeItem->data.V = psTimeFromMJD(time); + } + + // CELL.TRIMSEC needs special care + if (trimsec) { + psMetadataItem *trimsecItem = psMetadataLookup(target->concepts, "CELL.TRIMSEC"); + psFree(trimsecItem->data.V); + trimsecItem->data.V = psMemIncrRefCounter(trimsec); + } + + // CELL.BIASSEC needs special care + if (biassec) { + psMetadataItem *biassecItem = psMetadataLookup(target->concepts, "CELL.BIASSEC"); + psFree(biassecItem->data.V); + biassecItem->data.V = psMemIncrRefCounter(biassec); + } + + return success; +} + Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsAverage.h (revision 12167) @@ -0,0 +1,43 @@ +/* @file pmConceptsAverage.h + * @brief Average the values of multiple concepts + * + * @author Paul Price, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_AVERAGE_H +#define PM_CONCEPTS_AVERAGE_H + +/// @addtogroup Concepts Data Abstraction Concepts +/// @{ + +#include +#include "pmFPA.h" + +/// Set a variety of concepts in a cell by averaging over several +/// +/// In some instances, we want to combine the values of a concept for several cells into a single concept for +/// a single cell (e.g., when mosaicking multiple cells into a chip with one "cell"). This function averages +/// the values of various concepts: +/// - CELL.GAIN +/// - CELL.READNOISE +/// - CELL.EXPOSURE +/// - CELL.DARKTIME +/// - CELL.TIME +/// For other concepts, it ensures the values are consistent: +/// - CELL.READDIR +/// - CELL.TIMESYS +/// And for others, it takes the "worst" possible value: +/// - CELL.SATURATION +/// - CELL.BAD +bool pmConceptsAverageCells(pmCell *target,///< Target cell + psList *sources, ///< List of source cells + psRegion *trimsec, ///< The new trim section + psRegion *biassec ///< The new bias section + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.c (revision 12167) @@ -0,0 +1,41 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConceptsPhotcode.h" + +psString pmConceptsPhotcodeForView(pmConfig *config, pmFPAfile *file, pmFPAview *view) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(file, NULL); + PS_ASSERT_PTR_NON_NULL(view, NULL); + + if (view->chip < -1) { + psError(PS_ERR_IO, true, "Photcodes undefined for FPA: defined by chip\n"); + return NULL; + } + + // select recipe options supplied on command line + bool mdok; // Status of MD lookup + psMetadata *recipe = psMetadataLookupPtr(&mdok, config->recipes, "PPIMAGE"); + if (!mdok || !recipe) { + psError(PS_ERR_IO, true, "Recipe PPIMAGE not found\n"); + return NULL; + } + + // select photcode rule from recipe + char *rule = psMetadataLookupStr(&mdok, recipe, "PHOTCODE.RULE"); + if (!mdok || !rule || strlen(rule) == 0) { + psError(PS_ERR_IO, true, "PHOTCODE.RULE not found in PPIMAGE recipe\n"); + return NULL; + } + + // convert rule to real photcode + psString photcode = pmFPAfileNameFromRule(rule, file, view); + + return photcode; +} Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsPhotcode.h (revision 12167) @@ -0,0 +1,30 @@ +/* @file pmConceptsPhotcode.h + * @brief Generate a photcode from the concepts + * + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_PHOTCODE_H +#define PM_CONCEPTS_PHOTCODE_H + +/// @addtogroup Concepts Data Abstraction Concepts +/// @{ + +#include +#include "pmConfig.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +/// Return the photcode based on the PHOTCODE.RULE in the PHASE2 recipe +/// +/// A photometry code ("photcode") is a string that represents the combination of filter and detector (chip). +/// This functions generates a photcode for a particular chip within the FPA, based on the PHOTCODE.RULE in +/// the PHASE2 recipe. Interpolation using the usual syntax (e.g., "{CHIP.NAME}") is permitted. +psString pmConceptsPhotcodeForView(pmConfig *config, pmFPAfile *file, pmFPAview *view); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.c (revision 12167) @@ -0,0 +1,485 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmConcepts.h" +#include "pmConceptsRead.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// This function gets called for the really boring concepts --- where all you have to do is parse from a +// header or database and you don't need to muck around with conversions. There is no similar "formatPlain", +// since the type is already known. +static psMetadataItem *parsePlain(psMetadataItem *concept, // The concept to parse + const psMetadataItem *pattern // The concept pattern + ) +{ + assert(concept); + assert(pattern); + + switch (pattern->type) { + case PS_DATA_STRING: { + psString string = psMetadataItemParseString(concept); // Get the string, so I can free it after it + // goes on the MetadataItem + psMetadataItem *item = psMetadataItemAllocStr(pattern->name, pattern->comment, string); + psFree(string); + return item; + } + case PS_DATA_S32: + return psMetadataItemAllocS32(pattern->name, pattern->comment, psMetadataItemParseS32(concept)); + case PS_DATA_F32: + return psMetadataItemAllocF32(pattern->name, pattern->comment, psMetadataItemParseF32(concept)); + case PS_DATA_F64: + return psMetadataItemAllocF64(pattern->name, pattern->comment, psMetadataItemParseF64(concept)); + default: + psLogMsg(__func__, PS_LOG_WARN, "Concept %s (%s) is not of a standard type (%x)\n", + pattern->name, pattern->comment, pattern->type); + return NULL; + } +} + +// Parse a single concept +static bool conceptParse(pmConceptSpec *spec, // The concept specification + psMetadataItem *concept, // The concept to parse + pmConceptSource source, // The concept source + psMetadata *cameraFormat, // The camera format + psMetadata *target, // The target + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell // The cell + ) +{ + assert(spec); + assert(cameraFormat); + assert(target); + + if (!concept) { + psError(PS_ERR_UNKNOWN, true, "Concept is NULL"); + return false; + } + + psMetadataItem *parsed = NULL; // The parsed concept + if (spec->parse) { + parsed = spec->parse(concept, spec->blank, source, cameraFormat, fpa, chip, cell); + } else { + parsed = parsePlain(concept, spec->blank); + } + if (!parsed) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s\n", spec->blank->name); + return false; + } + + psTrace ("psModules.concepts", 3, "parsing concept: %s\n", spec->blank->name); + + // Plug the parsed concept into a new psMetadataItem, so each "concept" has its own version that can + // be altered without affecting the others. Also, so that we maintain the template name and comment. + psMetadataItem *cleaned = NULL; // Item that's been cleaned up --- correct name and comment + switch (spec->blank->type) { + case PS_DATA_STRING: + cleaned = psMetadataItemAllocStr(spec->blank->name, spec->blank->comment, parsed->data.V); + break; + case PS_DATA_S32: + cleaned = psMetadataItemAllocS32(spec->blank->name, spec->blank->comment, parsed->data.S32); + break; + case PS_DATA_F32: + cleaned = psMetadataItemAllocF32(spec->blank->name, spec->blank->comment, parsed->data.F32); + break; + case PS_DATA_F64: + cleaned = psMetadataItemAllocF64(spec->blank->name, spec->blank->comment, parsed->data.F64); + break; + default: + cleaned = psMetadataItemAlloc(spec->blank->name, parsed->type, spec->blank->comment, + parsed->data.V); + } + psFree(parsed); + psMetadataAddItem(target, cleaned, PS_LIST_TAIL, PS_META_REPLACE); + psFree(cleaned); // Drop reference + return true; +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool p_pmConceptsReadFromCells(psMetadata *target, const psMetadata *specs, const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(target, false); + if (!cell) { + psError(PS_ERR_UNKNOWN, true, "cell is NULL"); + return false; + } + + pmHDU *hdu = pmHDUGetLowest(NULL, NULL, cell); // The HDU at the lowest level + if (!hdu) { + psError(PS_ERR_UNKNOWN, true, "Can't find HDU for cell"); + return false; + } + psMetadata *cameraFormat = hdu->format; // The camera format + psMetadata *cellConfig = cell->config; // The camera configuration for this cell + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + bool status = true; // Status of reading concepts + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *conceptItem = psMetadataLookup(cellConfig, name); // The concept, or NULL + if (conceptItem) { + if (conceptItem->type == PS_DATA_STRING) { + // Check the SOURCE + psString nameSource = NULL; // String with the concept name and ".SOURCE" added + psStringAppend(&nameSource, "%s.SOURCE", name); + bool mdok = true; // Status of MD lookup + psString source = psMetadataLookupStr(&mdok, cell->config, nameSource); // The source + psFree(nameSource); + if (mdok && source && strlen(source) > 0 && strcasecmp(source, "VALUE") == 0) { + if (!conceptParse(spec, conceptItem, PM_CONCEPT_SOURCE_CELLS, + cameraFormat, target, NULL, NULL, cell)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s from camera " + "configuration\n", name); + status = false; + } + } else if (source && (strlen(source) == 0 || strcasecmp(source, "HEADER") != 0)) { + // We leave "HEADER" to pmConceptsReadFromHeader + psError(PS_ERR_IO, true, "%s isn't HEADER or VALUE --- can't read %s\n", source, + name); + continue; + } + } else { + // Another type --- should be OK + if (!conceptParse(spec, conceptItem, PM_CONCEPT_SOURCE_CELLS, + cameraFormat, target, NULL, NULL, cell)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s from camera " + "configuration.\n", name); + status = false; + } + } + } + } + psFree(specsIter); + return status; +} + + +bool p_pmConceptsReadFromDefaults(psMetadata *target, const psMetadata *specs, + const pmFPA *fpa, const pmChip *chip, const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(target, false); + + psTrace("psModules.concepts", 3, "Reading concepts from defaults...\n"); + + pmHDU *hdu = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hdu) { + // We read the defaults for all the HDUs we could find + return true; + } + psMetadata *cameraFormat = hdu->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *defaults = psMetadataLookupMetadata(&mdok, cameraFormat, "DEFAULTS"); // The DEFAULTS spec + if (!mdok || !defaults) { + psError(PS_ERR_IO, true, "Failed to find \"DEFAULTS\""); + return false; + } + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + bool status = true; // Status of reading concepts + psErrorClear(); // we're going to declare all errors "old" => won't clear stack + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *conceptItem = psMetadataLookup(defaults, name); // The concept, or NULL + psTrace("psModules.concepts", 10, "%s: %p\n", name, conceptItem); + if (conceptItem && conceptItem->type == PS_DATA_METADATA) { + psTrace("psModules.concepts", 5, "%s is of type METADATA.\n", name); + // Check for DEPEND + psMetadata *dependMenu = conceptItem->data.V; // The DEPEND menu + psString depend = NULL; // The CONCEPT.DEPEND + psStringAppend(&depend, "%s.DEPEND", name); + const char *dependConcept = psMetadataLookupStr(&mdok, defaults, depend); // The concept name + if (!mdok || !dependConcept || strlen(dependConcept) == 0) { + psError(PS_ERR_IO, true, "Unable to parse %s: couldn't find %s in DEFAULTS.\n", name, + depend); + psFree(depend); + continue; + } + psFree(depend); + // Now look up the depend value + psMetadataItem *dependValue = NULL; // The value of the concept we're looking up + if (cell) { + dependValue = psMetadataLookup(cell->concepts, dependConcept); + } + if (chip && !dependValue) { + dependValue = psMetadataLookup(chip->concepts, dependConcept); + } + if (fpa && !dependValue) { + dependValue = psMetadataLookup(chip->concepts, dependConcept); + } + if (!dependValue) { + psError(PS_ERR_IO, true, "Unable to find %s to resolve %s in DEFAULTS.\n", + dependConcept, name); + continue; + } + if (dependValue->type != PS_DATA_STRING) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "%s is required to resolve %s in DEFAULTS, " + "but it is not of type STRING.\n", dependConcept, name); + continue; + } + const char *dependKey = dependValue->data.V; // The key to the DEPEND menu + psTrace("psModules.concepts", 7, "%s.DEPEND resolves to %s....\n", name, dependKey); + + conceptItem = psMetadataLookup(dependMenu, dependKey); + // Now we can parse this as we would ordinarily + } + if (conceptItem && !conceptParse(spec, conceptItem, PM_CONCEPT_SOURCE_DEFAULTS, + cameraFormat, target, fpa, chip, cell)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s from DEFAULTS.\n", name); + status = false; + } + } + psFree(specsIter); + return status; +} + + +bool p_pmConceptsReadFromHeader(psMetadata *target, const psMetadata *specs, + const pmFPA *fpa, const pmChip *chip, const pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(target, false); + + pmHDU *hduLow = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hduLow) { + // We read the defaults for all the HDUs we could find + return true; + } + pmHDU *hduHigh = pmHDUGetHighest(fpa, chip, cell); // The HDU at the highest level + if (!hduHigh) { + psError(PS_ERR_UNKNOWN, true, "Can't find HDU at the highest level"); + return false; + } + assert(hduLow->format == hduHigh->format); // Just in case.... + psMetadata *cameraFormat = hduLow->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *transSpec = psMetadataLookupMetadata(&mdok, cameraFormat, "TRANSLATION"); // The TRANSLATION spec + if (!mdok || !transSpec) { + psError(PS_ERR_IO, true, "Failed to find \"TRANSLATION\""); + return false; + } + + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + bool status = true; // Status of reading concepts + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *headerItem = NULL; // The value of the concept from the header + + // First check the cell configuration + if (cell && cell->config) { + psMetadataItem *conceptItem = psMetadataLookup(cell->config, name); // The concept, or NULL + if (conceptItem) { + // Check the SOURCE + psString nameSource = NULL; // String with the concept name and ".SOURCE" added + psStringAppend(&nameSource, "%s.SOURCE", name); + psString source = psMetadataLookupStr(&mdok, cell->config, nameSource); // The source + psFree(nameSource); + if (mdok && strlen(source) && strcasecmp(source, "HEADER") == 0) { + headerItem = psMetadataLookup(hduLow->header, conceptItem->data.V); + if (!headerItem && hduHigh != hduLow) { + headerItem = psMetadataLookup(hduHigh->header, conceptItem->data.V); + } + psMemIncrRefCounter(headerItem); + } + // Leave the error handling to pmConceptsFromCamera, which should already have been called + } + } + + if (! headerItem) { + psString keywords = psMetadataLookupStr(&mdok, transSpec, name); // The FITS keywords + if (mdok && strlen(keywords) > 0) { + // In case there are multiple headers + psList *keys = psStringSplit(keywords, " ,;", true); // List of keywords + if (keys->n == 1) { + // Only one key --- proceed as usual + headerItem = psMetadataLookup(hduLow->header, keywords); + if (!headerItem && hduHigh != hduLow) { + headerItem = psMetadataLookup(hduHigh->header, keywords); + } + psMemIncrRefCounter(headerItem); + } else { + psListIterator *keysIter = psListIteratorAlloc(keys, PS_LIST_HEAD, false); // Iterator + psString key = NULL; // Item from iteration + psList *values = psListAlloc(NULL); // List containing the values + while ((key = psListGetAndIncrement(keysIter))) { + psMetadataItem *value = psMetadataLookup(hduLow->header, key); + if (!value && hduHigh != hduLow) { + value = psMetadataLookup(hduHigh->header, key); + } + if (!value) { + psWarning("Unable to find header %s --- assuming value is NULL", key); + } + psListAdd(values, PS_LIST_TAIL, value); + } + psFree(keysIter); + headerItem = psMetadataItemAlloc(name, PS_DATA_LIST, specItem->comment, values); + psFree(values); + } + psFree(keys); + } + } + + // This will also clean up the name + if (headerItem) { + if (!conceptParse(spec, headerItem, PM_CONCEPT_SOURCE_HEADER, + cameraFormat, target, fpa, chip, cell)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s from header.\n", name); + status = false; + } + } + psFree(headerItem); + } + psFree(specsIter); + return status; +} + + +// XXX --- the below code has NOT been tested! +bool p_pmConceptsReadFromDatabase(psMetadata *target, const psMetadata *specs, + const pmFPA *fpa, const pmChip *chip, const pmCell *cell, psDB *db) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(target, false); + + #ifndef HAVE_PSDB + + return true; + #else + + pmHDU *hdu = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hdu) { + // We read the database for all the HDUs we could find + return true; + } + psMetadata *cameraFormat = hdu->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *dbSpec = psMetadataLookupMetadata(&mdok, cameraFormat, "DATABASE"); // The DATABASE spec + if (!mdok || !dbSpec) { + return true; + } + + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + bool status = true; // Status of reading concepts + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + + psMetadata *dbLookup = psMetadataLookupMetadata(&mdok, dbSpec, name); + if (mdok && dbLookup) { + const char *tableName = psMetadataLookupStr(&mdok, dbLookup, "TABLE"); // Table name + // Names of the "where" columns + const char *givenCols = psMetadataLookupStr(&mdok, dbLookup, "GIVENDBCOL"); + // Values of the "where" columns + const char *givenPS = psMetadataLookupStr(&mdok, dbLookup, "GIVENPS"); + + // Now, need to get the "given"s + if (strlen(givenCols) > 0 || strlen(givenPS) > 0) { + psList *cols = psStringSplit(givenCols, ",;", true); // List of column names + psList *values = psStringSplit(givenPS, ",;", true); // List of value names for the columns + psMetadata *selection = psMetadataAlloc(); // The stuff to select in the DB + if (cols->n != values->n) { + psLogMsg(__func__, PS_LOG_WARN, + "The GIVENDBCOL and GIVENPS entries for %s do not have " + "the same number of entries --- ignored.\n", name); + } else { + // Iterators for the lists + psListIterator *colsIter = psListIteratorAlloc(cols, PS_LIST_HEAD, false); + psListIterator *valuesIter = psListIteratorAlloc(values, PS_LIST_HEAD, false); + char *column = NULL; // Name of the column + while ((column = psListGetAndIncrement(colsIter))) { + char *dependName = psListGetAndIncrement(valuesIter); // Name for the value + if (!strlen(column) || !strlen(name)) { + psLogMsg(__func__, PS_LOG_WARN, "One of the columns or value names for %s is " + " empty --- ignored.\n", name); + } else { + // Search for the value name + psMetadataItem *item = NULL; // The value + if (!item && cell) { + item = psMetadataLookup(cell->concepts, dependName); + } + if (!item && chip) { + item = psMetadataLookup(chip->concepts, dependName); + } + if (!item && fpa) { + item = psMetadataLookup(fpa->concepts, dependName); + } + if (! item) { + psLogMsg(__func__, PS_LOG_ERROR, "Unable to find the value name %s for DB" + " lookup on %s --- ignored.\n", dependName, name); + } else { + // We need to create a new psMetadataItem. I don't think we can't + // simply hack the existing one, since that could conceivably cause + // memory leaks + psMetadataItem *newItem = psMetadataItemAlloc(name, item->type, + item->comment, + item->data.V); + psMetadataAddItem(selection, newItem, PS_LIST_TAIL, PS_META_REPLACE); + psFree(newItem); + } + } + psFree(dependName); + psFree(column); + } // Iterating through the columns + psFree(colsIter); + psFree(valuesIter); + + psArray *dbResult = psDBSelectRows(db, tableName, selection, 2); // Lookup result + // Note that we use limit=2 in order to test if there are multiple rows returned + + psMetadataItem *conceptItem = NULL; // The final result of the DB lookup + if (dbResult->n == 0) { + psLogMsg(__func__, PS_LOG_WARN, + "Unable to find any rows in DB for %s --- ignored\n", name); + } else { + if (dbResult-> n > 1) { + psLogMsg(__func__, PS_LOG_WARN, + "Multiple rows returned in DB lookup for %s --- " + " using the first one only.\n", name); + } + conceptItem = (psMetadataItem*)dbResult->data[0]; + } + + // Now we have the result + if (!conceptParse(spec, conceptItem, PM_CONCEPT_SOURCE_DATABASE, + cameraFormat, target, fpa, chip, cell)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to parse concept %s from database.\n", + name); + status = false; + } + + } + psFree(cols); + psFree(values); + } + } // Doing the "given"s. + + } // Iterating through the concept specifications + psFree(specsIter); + + return status; + #endif +} + + Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsRead.h (revision 12167) @@ -0,0 +1,63 @@ +/* @file pmConceptsRead.h + * @brief Reading concepts from a variety of sources. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:14 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_READ_H +#define PM_CONCEPTS_READ_H + +#include +#include "pmFPA.h" + +/// Read concepts from the camera format file's CELLS. +/// +/// Examines the CELLS metadata in the camera format file +/// for the current type of cell, and sucks in the concepts defined there. +/// This is a useful way of defining concepts that vary depending on the +/// type of the cell. +bool p_pmConceptsReadFromCells(psMetadata *target, ///< Place into which to read the concepts + const psMetadata *specs, ///< The concept specifications + const pmCell *cell ///< The cell + ); + +/// Read concepts from the DEFAULTS in the camera format file. +/// +/// Examines the DEFAULTS metadata in the camera format file +/// for concepts in the specs, and imports them into the target. +bool p_pmConceptsReadFromDefaults(psMetadata *target, // Place into which to read the concepts + const psMetadata *specs, // The concept specifications + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell // The cell + ); + +/// Read concepts from the header TRANSLATION in the camera format file. +/// +/// Examines the TRANSLATION metadata in the camera format file +/// for concepts in the specs, and imports them into the target. +bool p_pmConceptsReadFromHeader(psMetadata *target, // Place into which to read the concepts + const psMetadata *specs, // The concept specifications + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell // The cell + ); + +/// Read concepts from the header DATABASE in the camera format file. +/// +/// Examines the DATABASE metadata in the camera format file +/// for concepts in the specs, and imports them into the target. +/// WARNING: This function has not been tested; use at your own risk! +bool p_pmConceptsReadFromDatabase(psMetadata *target, // Place into which to read the concepts + const psMetadata *specs, // The concept specifications + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell, // The cell + psDB *db // The database handle + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.c (revision 12167) @@ -0,0 +1,1111 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pslib.h" + +#include "pmFPA.h" +#include "pmConceptsRead.h" +#include "pmConceptsWrite.h" +#include "pmConceptsStandard.h" + +// The functions in this file are intended to be called solely within the psModules concepts code. For this +// reason, they use "assert" instead of the PS_ASSERT_WHATEVER functions --- if there's a problem, then +// there's a BIG problem that affects all of the code. + +#define COMPARE_REGIONS(a,b) (((a)->x0 == (b)->x0 && \ + (a)->x1 == (b)->x1 && \ + (a)->y0 == (b)->y0 && \ + (a)->y1 == (b)->y1) ? true : false) + +#define TYPE_CASE(assign, item, TYPE) \ +case PS_TYPE_##TYPE: \ +assign = item->data.TYPE; \ +break; + + + +static double defaultCoordScaling(const psMetadataItem *pattern) +{ + if (strcmp(pattern->name, "FPA.RA") == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Assuming format for %s is HOURS.\n", pattern->name); + return M_PI / 12.0; + } + if (strcmp(pattern->name, "FPA.DEC") == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Assuming format for %s is DEGREES.\n", pattern->name); + return M_PI / 180.0; + } + psAbort("Should never ever get here.\n"); + return NAN; +} + +// FPA.FILTER +psMetadataItem *p_pmConceptParse_FPA_FILTER(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(pattern); + assert(fpa); + assert(fpa->camera); + + if (concept->type != PS_DATA_STRING) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Type for %s (%x) is not STR\n", + pattern->name, concept->type); + return NULL; + } + + bool mdok; // Status of MD lookup + psMetadata *filters = psMetadataLookupMetadata(&mdok, fpa->camera, "FILTER.ID"); + if (!mdok || !filters) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FILTER.ID in camera configuration.\n"); + return NULL; + } + + const char *key = concept->data.str; // The name to look up + psString value = psMetadataLookupStr(&mdok, filters, key); // Value to use + if (!mdok || !value || strlen(value) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, + "Unable to find %s in FILTER.ID in camera configuration.\n", key); + return NULL; + } + + return psMetadataItemAllocStr(pattern->name, pattern->comment, value); +} + +psMetadataItem *p_pmConceptFormat_FPA_FILTER(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(fpa); + assert(fpa->camera); + + if (concept->type != PS_DATA_STRING) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Type for %s (%x) is not STR\n", + concept->name, concept->type); + return NULL; + } + + bool mdok; // Status of MD lookup + psMetadata *filters = psMetadataLookupMetadata(&mdok, fpa->camera, "FILTER.ID"); + if (!mdok || !filters) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FILTER.ID in camera configuration.\n"); + return NULL; + } + + psMetadataIterator *iter = psMetadataIteratorAlloc(filters, PS_LIST_HEAD, NULL); // Iterator for filters + psMetadataItem *item; // Item from iteration + char *name = NULL; // The winning name + while ((item = psMetadataGetAndIncrement(iter))) { + if (item->type != PS_DATA_STRING) { + psWarning("Type for %s (%x) in FILTER.ID in camera configuration is not STR\n", + item->name, item->type); + continue; + } + if (strcmp(item->data.str, concept->data.str) == 0) { + name = item->name; + break; + } + } + psFree(iter); + if (!name) { + psError(PS_ERR_UNEXPECTED_NULL, false, + "Unable to find any filter matching %s in FILTER.ID in camera configuration.\n", + concept->data.str); + return NULL; + } + + return psMetadataItemAllocStr(concept->name, concept->comment, name); +} + + +// FPA.RA and FPA.DEC +psMetadataItem *p_pmConceptParse_FPA_Coords(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(pattern); + assert(cameraFormat); + + double coords = NAN; // The coordinates + switch (concept->type) { + case PS_TYPE_F32: + coords = concept->data.F32; + break; + case PS_TYPE_F64: + coords = concept->data.F64; + break; + case PS_DATA_STRING: + // Sexagesimal format + { + int big, medium; + float small; + // XXX: Upgrade path is to allow dd:mm.mmm + if (sscanf(concept->data.V, "%d:%d:%f", &big, &medium, &small) != 3 && + sscanf(concept->data.V, "%d %d %f", &big, &medium, &small) != 3) + { + psError(PS_ERR_UNKNOWN, true, "Cannot interpret %s: %s\n", pattern->name, concept->data.str); + break; + } + coords = abs(big) + (float)medium/60.0 + small/3600.0; + if (big < 0) + { + coords *= -1.0; + } + } + break; + default: + psError(PS_ERR_UNKNOWN, true, "%s concept is of an unexpected type: %x\n", + pattern->name, concept->type); + return NULL; + } + + // How to interpret the coordinates + bool mdok = true; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, cameraFormat, "FORMATS"); + if (mdok && formats) { + psString format = psMetadataLookupStr(&mdok, formats, pattern->name); + if (mdok && strlen(format) > 0) { + if (strcasecmp(format, "HOURS") == 0) { + coords *= M_PI / 12.0; + } else if (strcasecmp(format, "DEGREES") == 0) { + coords *= M_PI / 180.0; + } else if (strcasecmp(format, "RADIANS") == 0) { + // No action required + } else { + coords *= defaultCoordScaling(pattern); + } + } else { + coords *= defaultCoordScaling(pattern); + } + } else { + coords *= defaultCoordScaling(pattern); + } + + return psMetadataItemAllocF64(pattern->name, pattern->comment, coords); +} + +// FPA.RA and FPA.DEC +psMetadataItem *p_pmConceptFormat_FPA_Coords(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cameraFormat); + + double coords = concept->data.F64; // The coordinates + + if (!isfinite(coords)) { + return psMetadataItemAllocF32(concept->name, concept->comment, NAN); + } + + // How to interpret the coordinates + bool mdok = true; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, + cameraFormat, + "FORMATS"); + if (mdok && formats) { + psString format = psMetadataLookupStr(&mdok,formats, concept->name); + if (mdok && strlen(format) > 0) { + if (strcasecmp(format, "HOURS") == 0) { + coords /= M_PI / 12.0; + } else if (strcasecmp(format, "DEGREES") == 0) { + coords /= M_PI / 180.0; + } else if (strcasecmp(format, "RADIANS") == 0) { + // No action required + } else { + coords /= defaultCoordScaling(concept); + } + } else { + coords /= defaultCoordScaling(concept); + } + } else { + coords /= defaultCoordScaling(concept); + } + + // We choose to write sexagesimal format + int big, medium; // Degrees and minutes + float small; // Seconds + bool negative = (coords < 0); // Are we working below zero? + coords = fabs(coords); + big = (int)abs(coords); + coords -= big; + medium = 60.0 * coords; + coords -= medium / 60.0; + small = 3600.0 * coords; + if (negative) { + big *= -1; + } + psString coordString = NULL; // String with the coordinates in sexagesimal format + psStringAppend(&coordString, "%d:%02d:%05.2f", big, medium, small); + psMetadataItem *coordItem = psMetadataItemAllocStr(concept->name, concept->comment, coordString); + psFree(coordString); + + return coordItem; +} + + +psMetadataItem *p_pmConceptParse_CELL_TRIMSEC(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cell); + assert(pattern); + + psRegion *trimsec = psRegionAlloc(0, 0, 0, 0); + + if (concept->type != PS_DATA_STRING) { + psError(PS_ERR_UNKNOWN, true, "CELL.TRIMSEC after read is not of type STR (%x)\n", concept->type); + return NULL; + } else { + *trimsec = psRegionFromString(concept->data.V); + } + + // Need to correct for binning when CELL.TRIMSEC are specified immutably in the CELLS + if (source == PM_CONCEPT_SOURCE_CELLS) { + psMetadataAddBool(cell->concepts, PS_LIST_TAIL, "CELL.TRIMSEC.UPDATE", 0, + "Need to update CELL.TRIMSEC when the binning is available.", + true); + } + + psMetadataItem *item = psMetadataItemAllocPtr(pattern->name, PS_DATA_REGION, pattern->comment, trimsec); + psFree(trimsec); + return item; +} + +psMetadataItem *p_pmConceptParse_CELL_BIASSEC(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cell); + assert(pattern); + + psList *biassecs = psListAlloc(NULL); // List of bias sections + + switch (concept->type) { + case PS_DATA_STRING: { + psList *regions = psStringSplit(concept->data.V, " ;", false); // List of regions + psListIterator *regionsIter = psListIteratorAlloc(regions, PS_LIST_HEAD, false); // Iterator + psString regionString = NULL; // Region string from iteration + while ((regionString = psListGetAndIncrement(regionsIter))) { + psRegion *region = psAlloc(sizeof(psRegion)); // The region + *region = psRegionFromString(regionString); + psListAdd(biassecs, PS_LIST_TAIL, region); + psFree(region); // Drop reference + } + psFree(regionsIter); + psFree(regions); + break; + } + case PS_DATA_LIST: { + psList *regions = concept->data.V; // The list of regions + psListIterator *regionsIter = psListIteratorAlloc(regions, PS_LIST_HEAD, false); // Iterator + psMetadataItem *regionItem = NULL; // Item from list iteration + while ((regionItem = psListGetAndIncrement(regionsIter))) { + if (regionItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.BIASSEC member is not of type STR --- ignored.\n"); + continue; + } + psRegion *region = psAlloc(sizeof(psRegion)); // The region + *region = psRegionFromString(regionItem->data.V); + psListAdd(biassecs, PS_LIST_TAIL, region); + psFree(region); // Drop reference + } + psFree(regionsIter); + break; + } + default: + psError(PS_ERR_UNKNOWN, true, "CELL.BIASSEC after read is not of type STRING or LIST --- assuming " + "blank.\n"); + } + + // Need to correct for binning when CELL.BIASSEC are specified immutably in the CELLS + if (source == PM_CONCEPT_SOURCE_CELLS) { + psMetadataAddBool(cell->concepts, PS_LIST_TAIL, "CELL.BIASSEC.UPDATE", 0, + "Need to update CELL.BIASSEC when the binning is available.", + true); + } + + psMetadataItem *item = psMetadataItemAllocPtr(pattern->name, PS_DATA_LIST, pattern->comment, biassecs); + psFree(biassecs); // Drop reference + return item; +} + +// CELL.XBIN and CELL.YBIN +psMetadataItem *p_pmConceptParse_CELL_Binning(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(pattern); + + int binning = 1; // Binning factor in x + switch (concept->type) { + case PS_DATA_STRING: { + psString binString = concept->data.V; // The string containing the binning + if ((strcmp(pattern->name, "CELL.XBIN") == 0 && sscanf(binString, "%d %*d", &binning) != 1 && + sscanf(binString, "%d,%*d", &binning) != 1) || + (strcmp(pattern->name, "CELL.YBIN") == 0 && sscanf(binString, "%*d %d", &binning) != 1 && + sscanf(binString, "%*d,%d", &binning) != 1)) { + psError(PS_ERR_UNKNOWN, true, "Unable to parse string to get %s: %s\n", pattern->name, binString); + } + break; + } + TYPE_CASE(binning, concept, U8); + TYPE_CASE(binning, concept, U16); + TYPE_CASE(binning, concept, U32); + TYPE_CASE(binning, concept, S8); + TYPE_CASE(binning, concept, S16); + TYPE_CASE(binning, concept, S32); + default: + psError(PS_ERR_UNKNOWN, true, "Note sure how to parse %s of type %x --- assuming 1.\n", pattern->name, + concept->type); + } + + return psMetadataItemAllocS32(pattern->name, pattern->comment, binning); +} + + +psMetadataItem *p_pmConceptParse_TIMESYS(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(pattern); + + psTimeType timeSys = PS_TIME_UTC; // The time system + psString sys = concept->data.V; // The time system string + if (concept->type != PS_DATA_STRING || strlen(sys) <= 0) { + psError(PS_ERR_UNKNOWN, true, "Can't interpret %s --- assuming UTC.\n", pattern->name); + } else if (strcasecmp(sys, "TAI") == 0) { + timeSys = PS_TIME_TAI; + } else if (strcasecmp(sys, "UTC") == 0) { + timeSys = PS_TIME_UTC; + } else if (strcasecmp(sys, "UT1") == 0) { + timeSys = PS_TIME_UT1; + } else if (strcasecmp(sys, "TT") == 0) { + timeSys = PS_TIME_TT; + } else { + psError(PS_ERR_UNKNOWN, true, "Can't interpret %s --- assuming UTC.\n", pattern->name); + } + + return psMetadataItemAllocS32(pattern->name, pattern->comment, timeSys); +} + +psMetadataItem *p_pmConceptParse_TIME(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cameraFormat); + + // Need TIMESYS first + psString timesysName = psStringCopy(pattern->name); // e.g., "CELL.TIME" --> "CELL.TIMESYS" + psStringSubstitute(×ysName, "TIMESYS", "TIME"); + bool mdok = false; // Result of MD lookup + psTimeType timeSys = PS_TIME_UTC; // The time system + if (cell) { + timeSys = psMetadataLookupS32(&mdok, cell->concepts, timesysName); + } + if (!mdok && chip) { + timeSys = psMetadataLookupS32(&mdok, chip->concepts, timesysName); + } + if (!mdok && fpa) { + timeSys = psMetadataLookupS32(&mdok, fpa->concepts, timesysName); + } + if (!mdok || (timeSys == 0xffffffff)) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find %s in concepts when parsing %s --- assuming UTC.\n", + timesysName, pattern->name); + timeSys = PS_TIME_UTC; + } + psFree(timesysName); + + // Work out how the time is represented + bool separateTime = false; + bool usaTime = false; // Is the time specified in USA (MM-DD-YYYY) order? + bool backwardsTime = false; // Is the time specified in backwards (DD-MM-YYYY) order? + bool yearFirst = false; // Is the time specified in yearFirst (YYYY-MM-DD) order? + bool pre2000Time = false; // Is the time specified pre-2000 (where the year only has two digits) + bool mjdTime = false; // Is the time specified a MJD? + bool jdTime = false; // Is the time specified a JD? + + // Get format + psMetadata *formats = psMetadataLookupMetadata(&mdok, cameraFormat, "FORMATS"); + if (!mdok || !formats) { + psError(PS_ERR_UNKNOWN, true, "Unable to find FORMATS in camera configuration.\n"); + return NULL; + } + + psString timeFormat = psMetadataLookupStr(&mdok, formats, pattern->name); + if (!mdok || strlen(timeFormat) == 0) { + psError(PS_ERR_UNKNOWN, true, "Unable to find %s in FORMATS.\n", pattern->name); + return NULL; + } + + // Parse the time format + // why should more than one be allowed?? + psList *timeFormats = psStringSplit(timeFormat, " ,;", false); // List of the format options + psListIterator *timeFormatsIter = psListIteratorAlloc(timeFormats, PS_LIST_HEAD, false); // Iter + while ((timeFormat = psListGetAndIncrement(timeFormatsIter))) { + if (strcasecmp(timeFormat, "SEPARATE") == 0) { + separateTime = true; + } else if (strcasecmp(timeFormat, "USA") == 0) { + usaTime = true; + backwardsTime = false; + yearFirst = false; + jdTime = false; + mjdTime = false; + } else if (strcasecmp(timeFormat, "BACKWARDS") == 0) { + backwardsTime = true; + usaTime = false; + yearFirst = false; + jdTime = false; + mjdTime = false; + } else if (strcasecmp(timeFormat, "YEAR.FIRST") == 0) { + yearFirst = true; + usaTime = false; + backwardsTime = false; + jdTime = false; + mjdTime = false; + } else if (strcasecmp(timeFormat, "PRE2000") == 0) { + pre2000Time = true; + } else if (strcasecmp(timeFormat, "MJD") == 0) { + mjdTime = true; + jdTime = false; + yearFirst = false; + backwardsTime = false; + usaTime = false; + } else if (strcasecmp(timeFormat, "JD") == 0) { + jdTime = true; + mjdTime = false; + yearFirst = false; + backwardsTime = false; + usaTime = false; + } else { + psError(PS_ERR_UNKNOWN, true, "Unrecognised FORMATS option for %s: %s --- " + "ignored.\n", pattern->name, timeFormat); + psFree(timeFormatsIter); + psFree(timeFormats); + return NULL; + } + } + psFree(timeFormatsIter); + psFree(timeFormats); + + psTime *time = NULL; // The time + switch (concept->type) { + case PS_DATA_LIST: { + if (!separateTime) { + psWarning ("DATE and TIME stored separately, but not specified in format\n"); + } + // The date and time are stored separately + // Assume the date is first and the time second + psList *dateTime = concept->data.V; // The list containing items for date and time + psMetadataItem *dateItem = psListGet(dateTime, PS_LIST_HEAD); // Item containing the date + if (!dateItem) { + psError(PS_ERR_UNKNOWN, true, "Date is not found.\n"); + return NULL; + } + if (dateItem->type != PS_DATA_STRING) { + psError(PS_ERR_UNKNOWN, true, "Date is not of type STR.\n"); + return NULL; + } + psString dateString = dateItem->data.V; // The string with the date + int day = 0, month = 0, year = 0; + if (sscanf(dateString, "%d-%d-%d", &year, &month, &day) != 3 && + sscanf(dateString, "%d/%d/%d", &year, &month, &day) != 3) { + psError(PS_ERR_UNKNOWN, true, "Unable to read date: %s\n", dateString); + return NULL; + } + if (backwardsTime) { + // Need to switch days and years + int temp = day; + day = year; + year = temp; + } + if (usaTime) { + // Need to switch everything around.... Yanks! + int temp = day; + day = month; + month = year; + year = temp; + } + if (year < 100) { + if (pre2000Time) { + year += 1900; + } else { + year += 2000; + } + } + sprintf(dateString,"%04d-%02d-%02d", year, month, day); + + psMetadataItem *timeItem = psListGet(dateTime, PS_LIST_HEAD + 1); // Item containing the time + if (!timeItem) { + psError(PS_ERR_UNKNOWN, true, "Time is not found.\n"); + return NULL; + } + psString timeString = NULL; // The string with the time + if (timeItem->type == PS_DATA_STRING) { + timeString = timeItem->data.V; + } else { + // Assume that time is specified in Second of Day (!) + double seconds = NAN; + switch (timeItem->type) { + TYPE_CASE(seconds, timeItem, U8); + TYPE_CASE(seconds, timeItem, U16); + TYPE_CASE(seconds, timeItem, U32); + TYPE_CASE(seconds, timeItem, S8); + TYPE_CASE(seconds, timeItem, S16); + TYPE_CASE(seconds, timeItem, S32); + TYPE_CASE(seconds, timeItem, F32); + TYPE_CASE(seconds, timeItem, F64); + default: + psError(PS_ERR_UNKNOWN, true, "Time is not of an expected type: %x\n", timeItem->type); + return NULL; + } + // Now print to timeString as "hh:mm:ss.ss" + int hours = seconds / 3600; + seconds -= (double)hours * 3600.0; + int minutes = seconds / 60; + seconds -= (double)minutes * 60.0; + psStringAppend(&timeString, "%02d:%02d:%02f", hours, minutes, seconds); + } + psString dateTimeString = NULL; + psStringAppend(&dateTimeString, "%sT%s", dateString, timeString); + time = psTimeFromISO(dateTimeString, timeSys); + psFree(dateTimeString); + break; + } + case PS_DATA_STRING: { + psString timeString = concept->data.V; // String with the time + if (jdTime) { + double timeValue = strtod (timeString, NULL); + time = psTimeFromJD(timeValue); + } else if (mjdTime) { + double timeValue = strtod (timeString, NULL); + time = psTimeFromMJD(timeValue); + } else { + // It's ISO + time = psTimeFromISO(timeString, timeSys); + } // Interpreting the time string + break; + } + case PS_TYPE_F32: { + double timeValue = (double)concept->data.F32; + if (jdTime) { + time = psTimeFromJD(timeValue); + } else if (mjdTime) { + time = psTimeFromMJD(timeValue); + } else { + psError(PS_ERR_UNKNOWN, true, "Not sure how to parse %s (%f) --- trying JD\n", + pattern->name, timeValue); + time = psTimeFromJD(timeValue); + } + break; + } + case PS_TYPE_F64: { + double timeValue = (double)concept->data.F64; + if (jdTime) { + time = psTimeFromJD(timeValue); + } else if (mjdTime) { + time = psTimeFromMJD(timeValue); + } else { + psError(PS_ERR_UNKNOWN, true, "Not sure how to parse %s (%f) --- trying JD\n", + pattern->name, timeValue); + time = psTimeFromJD(timeValue); + } + break; + } + default: + psError(PS_ERR_UNKNOWN, true, "Unable to parse %s.\n", pattern->name); + return NULL; + } + + psMetadataItem *item = psMetadataItemAllocPtr(pattern->name, PS_DATA_TIME, pattern->comment, time); + psFree(time); // Drop reference + return item; +} + +// Correct a position --- in case the user wants FORTRAN indexing (like the FITS standard...) +static int fortranCorr(const psMetadata *cameraFormat, // The camera format description + const char *name // Name of concept to check for FORTRAN indexing + ) +{ + bool mdok = false; // Result of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, cameraFormat, "FORMATS"); + if (mdok && formats) { + psString format = psMetadataLookupStr(&mdok, formats, name); + if (mdok && strlen(format) > 0 && strcasecmp(format, "FORTRAN") == 0) { + return 1; + } + } + return 0; +} + +psMetadataItem *p_pmConceptParse_Positions(const psMetadataItem *concept, + const psMetadataItem *pattern, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cameraFormat); + + int offset = 0; // Offset of component (0,0) corner from the parent (0,0) corner + + switch (concept->type) { + TYPE_CASE(offset, concept, U8); + TYPE_CASE(offset, concept, U16); + TYPE_CASE(offset, concept, U32); + TYPE_CASE(offset, concept, S8); + TYPE_CASE(offset, concept, S16); + TYPE_CASE(offset, concept, S32); + #if 0 + + case PS_DATA_STRING: { + // Interpret as a region specifier [x0:x1,y0:y1] + psRegion region = psRegionFromString(concept->data.V); + if (strstr(pattern->name, ".X0")) { + offset = region.x0; + } else if (strstr(pattern->name, ".Y0")) { + offset = region.y0; + } else if (strstr(pattern->name, ".X1")) { + offset = region.x1; + } else if (strstr(pattern->name, ".Y1")) { + offset = region.y1; + } else { + psError(PS_ERR_UNKNOWN, true, + "Unable to interpret %s because unable to determine if concept is X or Y.\n", + pattern->name); + return NULL; + } + break; + } + #endif + default: + if (concept->type == PS_TYPE_F32 && concept->data.F32 - (int)concept->data.F32 == 0) { + offset = concept->data.F32; + } else if (concept->type == PS_TYPE_F64 && concept->data.F64 - (int)concept->data.F64 == 0) { + offset = concept->data.F64; + } else { + psError(PS_ERR_UNKNOWN, true, "Concept %s is not of integer type, as expected.\n", pattern->name); + return NULL; + } + } + offset -= fortranCorr(cameraFormat, pattern->name); + return psMetadataItemAllocS32(pattern->name, pattern->comment, offset); +} + + +psMetadataItem *p_pmConceptFormat_CELL_TRIMSEC(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + + psRegion *trimsec = psMemIncrRefCounter(concept->data.V); // The trimsec region + + // Correct trim section for binning if it's specified explicitly (i.e., immutably) in the CELLS. + if (source == PM_CONCEPT_SOURCE_CELLS) { + bool xStatus, yStatus; // Status of MD lookups + int xBin = psMetadataLookupS32(&xStatus, cell->concepts, "CELL.XBIN"); + int yBin = psMetadataLookupS32(&yStatus, cell->concepts, "CELL.YBIN"); + if (!xStatus || !yStatus || xBin == 0 || yBin == 0) { + psWarning("Unable to find CELL.XBIN and CELL.YBIN to correct CELL.TRIMSEC.\n"); + return psMemIncrRefCounter((psPtr)concept); // Casting away "const" to increment + } + psRegion *newTrimsec = psRegionAlloc(trimsec->x0 * xBin, trimsec->x1 * xBin, + trimsec->y0 * yBin, trimsec->y1 * yBin); // Adjusted for binning + psFree(trimsec); + trimsec = newTrimsec; + } + + psString trimsecString = psRegionToString(*trimsec); + psFree(trimsec); + psMetadataItem *formatted = psMetadataItemAllocStr(concept->name, concept->comment, + trimsecString); + psFree(trimsecString); + return formatted; +} + +psMetadataItem *p_pmConceptFormat_CELL_BIASSEC(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + // Return a metadata item containing a list of metadata items of region strings + psList *biassecs = concept->data.V; // The biassecs region list + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, false); // Iterator + psRegion *region = NULL; // Region from iteration + psList *new = psListAlloc(NULL); // New list containing metadatas + while ((region = psListGetAndIncrement(biassecsIter))) { + + // Correct bias section for binning if it's specified explicitly (i.e., immutably) in the CELLS. + if (source == PM_CONCEPT_SOURCE_CELLS) { + bool xStatus, yStatus; // Status of MD lookups + int xBin = psMetadataLookupS32(&xStatus, cell->concepts, "CELL.XBIN"); + int yBin = psMetadataLookupS32(&yStatus, cell->concepts, "CELL.YBIN"); + if (!xStatus || !yStatus || xBin == 0 || yBin == 0) { + psWarning("Unable to find CELL.XBIN and CELL.YBIN to correct CELL.BIASSEC.\n"); + } else { + psRegion *newTrimsec = psRegionAlloc(region->x0 * xBin, region->x1 * xBin, + region->y0 * yBin, region->y1 * yBin); + region = newTrimsec; + } + } else { + psMemIncrRefCounter(region); + } + + psString regionString = psRegionToString(*region); // The string region "[x0:x1,y0:y1]" + psFree(region); + psMetadataItem *item = psMetadataItemAllocStr(concept->name, concept->comment, regionString); + psFree(regionString); // Drop reference + psListAdd(new, PS_LIST_TAIL, item); + psFree(item); // Drop reference + } + psFree(biassecsIter); + psMetadataItem *formatted = psMetadataItemAllocPtr(concept->name, PS_DATA_LIST, concept->comment, new); + psFree(new); // Drop reference + return formatted; +} + +// This function actually does both CELL.XBIN and CELL.YBIN if CELL.XBIN and CELL.YBIN are specified by the +// same header. +psMetadataItem *p_pmConceptFormat_CELL_XBIN(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + + psMetadata *translation = psMetadataLookupMetadata(NULL, cameraFormat, "TRANSLATION"); + bool xBinOK = true, yBinOK = true; // Status of MD lookups + psString xKeyword = psMetadataLookupStr(&xBinOK, translation, "CELL.XBIN"); + psString yKeyword = psMetadataLookupStr(&yBinOK, translation, "CELL.YBIN"); + if (xBinOK && yBinOK && strlen(xKeyword) > 0 && strlen(yKeyword) > 0 && + strcasecmp(xKeyword, yKeyword) == 0) { + psMetadataItem *yBinItem = psMetadataLookup(cell->concepts, "CELL.YBIN"); // Binning factor in y + psString binString = NULL; + psStringAppend(&binString, "%d %d", concept->data.S32, yBinItem->data.S32); + psMetadataItem *binItem = psMetadataItemAllocStr(concept->name, concept->comment, binString); + psFree(binString); + return binItem; + } + + // Otherwise, there's no formatting required + return psMetadataItemCopy(concept); +} + +// Only need to format if both if CELL.XBIN and CELL.YBIN are not specified by the same header. +psMetadataItem *p_pmConceptFormat_CELL_YBIN(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + + psMetadata *translation = psMetadataLookupMetadata(NULL, cameraFormat, "TRANSLATION"); + bool xBinOK = true, yBinOK = true; // Status of MD lookups + psString xKeyword = psMetadataLookupStr(&xBinOK, translation, "CELL.XBIN"); + psString yKeyword = psMetadataLookupStr(&yBinOK, translation, "CELL.YBIN"); + if (xBinOK && yBinOK && strlen(xKeyword) > 0 && strlen(yKeyword) > 0 && + strcasecmp(xKeyword, yKeyword) == 0) { + // Censor this --- it's already done (though no harm if it's done twice + return NULL; + } + + // No formatting required + return psMetadataItemCopy(concept); +} + + +psMetadataItem *p_pmConceptFormat_TIMESYS(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + psString sys = NULL; // String to store + switch (concept->data.S32) { + case PS_TIME_TAI: + sys = psStringCopy("TAI"); + break; + case PS_TIME_UTC: + sys = psStringCopy("UTC"); + break; + case PS_TIME_UT1: + sys = psStringCopy("UT1"); + break; + case PS_TIME_TT: + sys = psStringCopy("TT"); + break; + default: + sys = psStringCopy("Unknown"); + } + psMetadataItem *newItem = psMetadataItemAllocStr(concept->name, concept->comment, sys); + psFree(sys); + + return newItem; +} + +psMetadataItem *p_pmConceptFormat_TIME(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + psTime *time = concept->data.V; // The time + + // Work out the format + bool separateTime = false; // Are the date and time stored separately? + bool pre2000Time = false; // Is the year in pre-2000 format (two digits only)? + bool backwardsTime = false; // Is the date stored backwards (DD-MM-YYYY)? + bool usaTime = false; // Is the date stored in USA order (MM-DD-YYYY)? + bool jdTime = false; // Is the date stored as a JD? + bool mjdTime = false; // Is the date stored as a MJD? + bool yearFirst = false; + + bool mdok = true; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, cameraFormat, "FORMATS"); // The formats + if (mdok && formats) { + psString format = psMetadataLookupStr(&mdok, formats, concept->name); // The formats for eg, CELL.TIME + if (mdok && format && strlen(format) > 0) { + psList *formatList = psStringSplit(format, " ,;", false); // List of formats specified + psListIterator *formatListIter = psListIteratorAlloc(formatList, PS_LIST_HEAD, false); // Iterator + while ((format = psListGetAndIncrement(formatListIter))) { + if (strcasecmp(format, "SEPARATE") == 0) { + separateTime = true; + } else if (strcasecmp(format, "USA") == 0) { + usaTime = true; + backwardsTime = false; + jdTime = false; + mjdTime = false; + } else if (strcasecmp(format, "BACKWARDS") == 0) { + backwardsTime = true; + usaTime = false; + mjdTime = false; + jdTime = false; + } else if (strcasecmp(format, "YEAR.FIRST") == 0) { + yearFirst = true; + usaTime = false; + backwardsTime = false; + jdTime = false; + mjdTime = false; + } else if (strcasecmp(format, "PRE2000") == 0) { + pre2000Time = true; + } else if (strcasecmp(format, "MJD") == 0) { + mjdTime = true; + usaTime = false; + backwardsTime = false; + jdTime = false; + separateTime = false; + } else if (strcasecmp(format, "JD") == 0) { + jdTime = true; + usaTime = false; + backwardsTime = false; + mjdTime = false; + separateTime = false; + } else { + psLogMsg(__func__, PS_LOG_WARN, "Unrecognised FORMATS option for %s: %s --- " + "ignored.\n", concept->name, format); + } + } + psFree(formatListIter); + psFree(formatList); + } + } + + if (separateTime) { + // We're working with two separate headers --- construct a list with the date and time separately + psString dateTimeString = psTimeToISO(time); // String representation + psList *dateTime = psStringSplit(dateTimeString, "T", true); + psFree(dateTimeString); + psString dateString = psListGet(dateTime, PS_LIST_HEAD); // The date string + psString timeString = psListGet(dateTime, PS_LIST_TAIL); // The time string + + // Need to format the strings.... + // XXX: Couldn't be bothered doing these right now + if (pre2000Time) { + psError(PS_ERR_UNKNOWN, true, "Don't you realise it's the twenty-first century?\n"); + return NULL; + } + if (backwardsTime) { + int day, month, year; + psTrace ("psModules.concepts", 5, "ISO time has year first, convert to DD-MM-YYYY"); + sscanf (dateString, "%d-%d-%d", &year, &month, &day); + sprintf (dateString, "%02d-%02d-%04d", day, month, year); + // XXX fix this for str length + } + if (usaTime) { + int day, month, year; + psTrace ("psModules.concepts", 5, "ISO time has year first, convert to MM-DD-YYYY"); + sscanf (dateString, "%d-%d-%d", &year, &month, &day); + sprintf (dateString, "%02d-%02d-%04d", month, day, year); + // XXX fix this for str length + } + if (yearFirst) { + psTrace ("psModules.concepts", 5, "ISO time has year first, no adjustment needed"); + } + + psMetadataItem *dateItem = psMetadataItemAllocStr(concept->name, "The date of observation", + dateString); + psMetadataItem *timeItem = psMetadataItemAllocStr(concept->name, "The time of observation", + timeString); + + psListRemove(dateTime, PS_LIST_HEAD); + psListRemove(dateTime, PS_LIST_HEAD); + + psListAdd(dateTime, PS_LIST_HEAD, dateItem); + psListAdd(dateTime, PS_LIST_TAIL, timeItem); + + psMetadataItem *item = psMetadataItemAllocPtr(concept->name, PS_DATA_LIST, concept->comment, + dateTime); + psFree (dateItem); + psFree (timeItem); + psFree (dateTime); + return item; + } + if (jdTime) { + double jd = psTimeToMJD(time); + return psMetadataItemAllocF64(concept->name, concept->comment, jd); + } + if (mjdTime) { + double mjd = psTimeToMJD(time); + return psMetadataItemAllocF64(concept->name, concept->comment, mjd); + } + + // If we've gotten this far, so it's straight ISO. + psString dateTimeString = psTimeToISO(time); // String representation + psMetadataItem *item = psMetadataItemAllocStr(concept->name, concept->comment, dateTimeString); + psFree(dateTimeString); + return item; +} + + +psMetadataItem *p_pmConceptFormat_Positions(const psMetadataItem *concept, + pmConceptSource source, + const psMetadata *cameraFormat, + const pmFPA *fpa, + const pmChip *chip, + const pmCell *cell) +{ + assert(concept); + assert(cameraFormat); + + if (concept->type != PS_TYPE_S32) { + psError(PS_ERR_UNKNOWN, true, "Concept %s is not of type S32, as expected.\n", concept->name); + return NULL; + } + + #if 0 + // If both the X0 and Y0 positions are specified by the same header keyword, write both together, as part + // of the call for the X0 position. + // This is a bit of a kludge --- we're going to write it out as [x0:0,y0:0]. This means that we will be + // able to read it back in, but we've destroyed the x1 and y1 if it was present. + // We *could* attempt to read the header, parse the region, and only update the ones that we're trying + // to update. Consider this an upgrade option later. + // Alternatively, we could add X1 and Y1 concepts, and write the whole lot out together. + // But until we care about X1 and Y1, it doesn't really matter --- if you want X1 and Y1, look at X0 and + // Y0 and add NXAIS1 and NAXIS2, respectively.... + if (strstr(concept->name, ".X0")) { + psString companion = psStringCopy(concept->name); // Companion entry: ".Y" where this one has ".X" + psStringSubstitute(&companion, ".Y0", ".X0"); + + // Look both up in the camera format config + psMetadata *translation = psMetadataLookupMetadata(NULL, cameraFormat, "TRANSLATION"); + bool xFound = true, yFound = true; // Status of MD lookups + psString xKeyword = psMetadataLookupStr(&xFound, translation, concept->name); + psString yKeyword = psMetadataLookupStr(&yFound, translation, companion); + if (xFound && yFound && strlen(xKeyword) > 0 && strlen(yKeyword) > 0 && + strcasecmp(xKeyword, yKeyword) == 0) { + psMetadataItem *yItem = psMetadataLookup(cell->concepts, companion); // Corresponding y value + + int x = concept->data.S32 + fortranCorr(cameraFormat, concept->name); // x value + int y = yItem->data.S32 + fortranCorr(cameraFormat, companion); // y value + + psRegion region = psRegionSet(x, x, y, y); + psString string = psRegionToString(region); + psMetadataItem *binItem = psMetadataItemAllocStr(concept->name, concept->comment, string); + psFree(string); + psFree(companion); + return binItem; + } + psFree(companion); + } else if (strstr(concept->name, ".Y0")) { + psString companion = psStringCopy(concept->name); // Companion entry: ".Y" where this one has ".X" + psStringSubstitute(&companion, ".X0", ".Y0"); + + // Look both up in the camera format config + psMetadata *translation = psMetadataLookupMetadata(NULL, cameraFormat, "TRANSLATION"); + bool xFound = true, yFound = true; // Status of MD lookups + psString xKeyword = psMetadataLookupStr(&xFound, translation, concept->name); + psString yKeyword = psMetadataLookupStr(&yFound, translation, companion); + psFree(companion); + if (xFound && yFound && strlen(xKeyword) > 0 && strlen(yKeyword) > 0 && + strcasecmp(xKeyword, yKeyword) == 0) { + return NULL; // We did it with the X; don't do anything. + } + } + #endif + + int offset = concept->data.S32; + offset += fortranCorr(cameraFormat, concept->name); + return psMetadataItemAllocS32(concept->name, concept->comment, offset); +} + + Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsStandard.h (revision 12167) @@ -0,0 +1,182 @@ +/* @file pmConceptsStandard.h + * @brief Private functions for parsing and formatting standard concepts. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-12 22:22:15 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_STANDARD_H +#define PM_CONCEPTS_STANDARD_H + +/// @addtogroup Concepts Data Abstraction Concepts +/// @{ + +#include +#include "pmFPA.h" +#include "pmConcepts.h" + +/// Parse the FPA.FILTER concept to apply a lookup table +psMetadataItem *p_pmConceptParse_FPA_FILTER(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the FPA.FILTER concept to (reverse-)apply a lookup table +psMetadataItem *p_pmConceptFormat_FPA_FILTER(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the coordinates concepts: FPA.RA and FPA.DEC +psMetadataItem *p_pmConceptParse_FPA_Coords(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the coordinates concepts: FPA.RA and FPA.DEC +psMetadataItem *p_pmConceptFormat_FPA_Coords(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the CELL.TRIMSEC concept +psMetadataItem *p_pmConceptParse_CELL_TRIMSEC(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the CELL.BIASSEC concept +psMetadataItem *p_pmConceptParse_CELL_BIASSEC(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the cell binning concepts: CELL.XBIN, CELL.YBIN +psMetadataItem *p_pmConceptParse_CELL_Binning(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the time system concepts: FPA.TIMESYS and CELL.TIMESYS +psMetadataItem *p_pmConceptParse_TIMESYS(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse the time concepts: FPA.TIME and CELL.TIME +psMetadataItem *p_pmConceptParse_TIME(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Parse a cell position concept, e.g., CELL.X0 +psMetadataItem *p_pmConceptParse_Positions(const psMetadataItem *concept, ///< Concept to parse + const psMetadataItem *pattern, ///< Pattern to use in parsing + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the CELL.TRIMSEC concept +psMetadataItem *p_pmConceptFormat_CELL_TRIMSEC(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the CELL.BIASSEC concept +psMetadataItem *p_pmConceptFormat_CELL_BIASSEC(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the CELL.XBIN concept +psMetadataItem *p_pmConceptFormat_CELL_XBIN(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the CELL.YBIN concept +psMetadataItem *p_pmConceptFormat_CELL_YBIN(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the time system concepts: FPA.TIMESYS and CELL.TIMESYS +psMetadataItem *p_pmConceptFormat_TIMESYS(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format the time concepts: FPA.TIME and CELL.TIME +psMetadataItem *p_pmConceptFormat_TIME(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); + +/// Format a cell position concept, e.g., CELL.X0 +psMetadataItem *p_pmConceptFormat_Positions(const psMetadataItem *concept, ///< Concept to format + pmConceptSource source, ///< Source for concept + const psMetadata *cameraFormat, ///< Camera format definition + const pmFPA *fpa, ///< FPA for concept, or NULL + const pmChip *chip, ///< Chip for concept, or NULL + const pmCell *cell ///< Cell for concept, or NULL + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.c (revision 12167) @@ -0,0 +1,67 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include + +#include "pmFPA.h" +#include "pmConceptsUpdate.h" + +bool pmConceptsUpdate(const pmFPA *fpa, const pmChip *chip, const pmCell *cell) +{ + if (fpa) { + // Check for FPA concepts updates + } + + if (chip) { + // Check for chip concepts updates + } + + if (cell) { + // Check for cell concepts updates + + // CELL.TRIMSEC needs to be updated for the binning + if (psMetadataLookup(cell->concepts, "CELL.TRIMSEC.UPDATE")) { + bool xStatus, yStatus; // Status of MD lookups + int xBin = psMetadataLookupS32(&xStatus, cell->concepts, "CELL.XBIN"); + int yBin = psMetadataLookupS32(&yStatus, cell->concepts, "CELL.YBIN"); + if (xStatus && yStatus && xBin != 0 && yBin != 0) { + psRegion *trimsec = psMetadataLookupPtr(NULL, cell->concepts, "CELL.TRIMSEC"); // Trim section + trimsec->x0 /= xBin; + trimsec->x1 /= xBin; + trimsec->y0 /= yBin; + trimsec->y1 /= yBin; + + psMetadataRemoveKey(cell->concepts, "CELL.TRIMSEC.UPDATE"); + } + } + + // CELL.BIASSEC needs to be updated for the binning + if (psMetadataLookup(cell->concepts, "CELL.BIASSEC.UPDATE")) { + bool xStatus, yStatus; // Status of MD lookups + int xBin = psMetadataLookupS32(&xStatus, cell->concepts, "CELL.XBIN"); + int yBin = psMetadataLookupS32(&yStatus, cell->concepts, "CELL.YBIN"); + if (xStatus && yStatus && xBin != 0 && yBin != 0) { + psList *biassecs = psMetadataLookupPtr(NULL, cell->concepts, "CELL.BIASSEC"); // Bias sections + psListIterator *biassecsIter = psListIteratorAlloc(biassecs, PS_LIST_HEAD, true); // Iterator + psRegion *bias; // Bias region, from iteration + while ((bias = psListGetAndIncrement(biassecsIter))) { + bias->x0 /= xBin; + bias->x1 /= xBin; + bias->y0 /= yBin; + bias->y1 /= yBin; + } + psFree(biassecsIter); + + psMetadataRemoveKey(cell->concepts, "CELL.BIASSEC.UPDATE"); + } + } + + } + + return true; +} Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsUpdate.h (revision 12167) @@ -0,0 +1,28 @@ +/* @file pmConceptsUpdate.h + * @brief Function to update concepts. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-12 22:22:15 $ + * Copyright 2005-2007 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_UPDATE_H +#define PM_CONCEPTS_UPDATE_H + +#include "pmFPA.h" + + +/// Check for concepts to update. +/// +/// Updating concepts is necessary if one concept depends on the value of another. In that case, a flag +/// (e.g., CONCEPTNAME.UPDATE" in the concepts) can be set, and it can be updated once the required value is +/// known. +bool pmConceptsUpdate(const pmFPA *fpa, ///< FPA for which to update concepts + const pmChip *chip, ///< Chip for which to update concepts + const pmCell *cell ///< Cell for which to update concepts + ); + + +#endif Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.c =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.c (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.c (revision 12167) @@ -0,0 +1,563 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDU.h" +#include "pmHDUUtils.h" +#include "pmConcepts.h" +#include "pmConceptsRead.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// File-static functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +static bool compareConcepts(const psMetadataItem *compare, // Item to compare + const psMetadataItem *standard // Standard for comparison + ) +{ + // First order checks + if (! compare || ! standard) { + return false; + } + if (strcasecmp(compare->name, standard->name) != 0) { + return false; + } + + // Special case: list + if (compare->type == PS_DATA_LIST) { + // "compare" contains a list of psMetadataItems + // "standard" likely contains just a string (but it might possibly be a list of strings) + psList *cList = compare->data.V; // The list from comparison item + psList *sList = NULL; // The list from standard item + switch (standard->type) { + case PS_DATA_STRING: + sList = psStringSplit(standard->data.V, " ;", true); + break; + case PS_DATA_LIST: + sList = psMemIncrRefCounter(standard->data.V); + break; + default: + return false; + } + if (cList->n != sList->n) { + psFree(sList); + return false; + } + psVector *match = psVectorAlloc(cList->n, PS_TYPE_U8); // Array indicating which values match + psVectorInit(match, 0); + psListIterator *cIter = psListIteratorAlloc(cList, PS_LIST_HEAD, false); // compare iterator + psListIterator *sIter = psListIteratorAlloc(sList, PS_LIST_HEAD, false); // standard iterator + psMetadataItem *cItem = NULL; // Item from compare list + while ((cItem = psListGetAndIncrement(cIter))) { + if (cItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "psMetadataItem from list is of type %x instead of " + "%x (PS_DATA_STRING) --- can't interpret.\n", cItem->type, PS_DATA_STRING); + psFree(cIter); + psFree(sIter); + psFree(match); + psFree(sList); + return false; + } + psString cString = cItem->data.V; // String from compare list + psListIteratorSet(sIter, PS_LIST_HEAD); + int index = 0; // Index for list + bool found = false; // Found a match? + for (psString sString = NULL; (sString = psListGetAndIncrement(sIter)) && !found; index++) { + if (strcasecmp(cString, sString) == 0) { + match->data.U8[index]++; + found = true; + } + } + if (! found) { + // Can give up immediately + psFree(cIter); + psFree(sIter); + psFree(match); + psFree(sList); + return false; + } + } + // Make sure we got 100% matches in both directions + bool allMatch = true; // Did all of them match? + for (int i = 0; i < match->n && allMatch; i++) { + if (!match->data.U8[i]) { + allMatch = false; + } + } + psFree(cIter); + psFree(sIter); + psFree(sList); + psFree(match); + return allMatch; + } + + return psMetadataItemCompare(compare, standard); + +} + + +// Format a single concept +static psMetadataItem *conceptFormat(const pmConceptSpec *spec, // The concept specification + const psMetadataItem *concept, // The concept to parse + pmConceptSource source, // The concept source + const psMetadata *cameraFormat, // The camera format + const pmFPA *fpa, // The FPA + const pmChip *chip, // The chip + const pmCell *cell // The cell + ) +{ + assert(spec); + assert(cameraFormat); + + if (concept) { + psMetadataItem *formatted = NULL; // The formatted concept + if (spec->format) { + formatted = spec->format(concept, source, cameraFormat, fpa, chip, cell); + } else if (strcmp(concept->name, spec->blank->name) != 0) { + // Adjust so that the name is correct + formatted = psMetadataItemCopy(concept); + psFree(formatted->name); + formatted->name = psStringCopy(spec->blank->name); + } else { + // Can get away with merely incrementing the reference counter + formatted = psMemIncrRefCounter((const psPtr)concept); + } + + return formatted; + } + return NULL; +} + +// Write a single value to a header +static bool writeSingleHeader(pmHDU *hdu, // HDU for which to add to the header + const char *keyword, // Keyword to add + const psMetadataItem *item // Item to add to the header; may be NULL + ) +{ + assert(hdu); + assert(keyword && strlen(keyword) > 0); + + if (!hdu->header) { + hdu->header = psMetadataAlloc(); + } + if (!item) { + psTrace("psModules.concepts", 9, "Writing header %s: <<>>\n", keyword); + // Assume it's a NULL string: it's most easily parsed. + return psMetadataAddStr(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, NULL, NULL); + } + switch (item->type) { + case PS_DATA_STRING: + psTrace("psModules.concepts", 9, "Writing header %s: %s\n", keyword, item->data.str); + return psMetadataAddStr(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, item->comment, + item->data.V); + case PS_DATA_S32: + psTrace("psModules.concepts", 9, "Writing header %s: %d\n", keyword, item->data.S32); + return psMetadataAddS32(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, item->comment, + item->data.S32); + case PS_DATA_F32: + psTrace("psModules.concepts", 9, "Writing header %s: %f\n", keyword, item->data.F32); + return psMetadataAddF32(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, item->comment, + item->data.F32); + case PS_DATA_F64: + psTrace("psModules.concepts", 9, "Writing header %s: %f\n", keyword, item->data.F64); + return psMetadataAddF64(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, item->comment, + item->data.F64); + case PS_DATA_REGION: { + psString region = psRegionToString(*(psRegion*)item->data.V); + psTrace("psModules.concepts", 9, "Writing header %s: %s\n", keyword, region); + bool result = psMetadataAddStr(hdu->header, PS_LIST_TAIL, keyword, PS_META_REPLACE, item->comment, + region); + psFree(region); + return result; + } + default: + psLogMsg(__func__, PS_LOG_WARN, "Type of %s is not suitable for a FITS header --- not added.\n", + item->name); + return false; + } +} + + +// Write potentially multiple values to a header +static bool writeHeader(pmHDU *hdu, // HDU for which to add to the header + const char *keywords, // Keywords to add + const psMetadataItem *item // Item to add to the header + ) +{ + assert(hdu); + assert(keywords); + assert(item); + + bool status = true; // Status of writing headers, to be returned + if (item->type == PS_DATA_LIST) { + psList *values = item->data.V; // List of outputs + psList *keys = psStringSplit(keywords, " ,;", true); // List of keywords + if (keys->n != values->n && values->n != 0) { + psError(PS_ERR_UNKNOWN, true, "Number of keywords (%ld) does not match number of " + "values (%ld).\n", keys->n, values->n); + psFree(keys); + return false; + } + psListIterator *keysIter = psListIteratorAlloc(keys, PS_LIST_HEAD, false); // Iterator for keywords + psListIterator *valuesIter = psListIteratorAlloc(values, PS_LIST_HEAD, false); // Iterator for values + psString key = NULL; // Keyword from iteration + while ((key = psListGetAndIncrement(keysIter))) { + psMetadataItem *value = psListGetAndIncrement(valuesIter); // Value from iteration; may be NULL + status &= writeSingleHeader(hdu, key, value); + } + psFree(keysIter); + psFree(valuesIter); + psFree(keys); + } else { + status = writeSingleHeader(hdu, keywords, item); + } + return status; +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool p_pmConceptsWriteToCells(const psMetadata *specs, const pmCell *cell, const psMetadata *concepts) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(concepts, false); + if (!cell) { + return false; + } + if (!cell->config) { + return false; + } + + pmHDU *hdu = pmHDUGetLowest(NULL, NULL, cell); // The HDU at the lowest level + if (!hdu) { + return false; + } + psMetadata *cameraFormat = hdu->format; // The camera format + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *cameraItem = psMetadataLookup(cell->config, name); // The concept from the camera, + // or NULL + if (cameraItem) { + // Grab the concept + psMetadataItem *conceptItem = psMetadataLookup(concepts, name); // The concept + + psString nameSource = NULL; // String with the concept name and ".SOURCE" added + psStringAppend(&nameSource, "%s.SOURCE", name); + bool mdok = true; // Status of MD lookup + psString source = psMetadataLookupStr(&mdok, cell->config, nameSource); // The source + if (mdok && strlen(source) > 0) { + psTrace("psModules.concepts", 8, "%s is %s\n", nameSource, source); + if (strcasecmp(source, "HEADER") == 0) { + if (cameraItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "Concept %s is specified by header, but is not " + "of type STR --- ignored.\n", conceptItem->name); + continue; + } + + // Formatted version + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_HEADER, + cameraFormat, NULL, NULL, cell); + if (!formatted) { + continue; + } + + psTrace("psModules.concepts", 8, "Writing %s to header %s\n", name, cameraItem->data.str); + writeHeader(hdu, cameraItem->data.V, formatted); + psFree(formatted); + } else if (strcasecmp(source, "VALUE") == 0) { + // Formatted version + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_CELLS, + cameraFormat, NULL, NULL, cell); + if (!formatted) { + continue; + } + + psTrace("psModules.concepts", 8, "Checking %s against camera format.\n", name); + if (! compareConcepts(formatted, cameraItem)) { + psLogMsg(__func__, PS_LOG_WARN, "Concept %s is specified by value in the camera " + "format, but the values don't match.\n", name); + } + psFree(formatted); + } else { + psLogMsg(__func__, PS_LOG_WARN, "Concept source %s isn't HEADER or VALUE --- can't " + "write\n", nameSource); + } + } else { + // Assume it's specified by value + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_CELLS, + cameraFormat, NULL, NULL, cell); + if (!formatted) { + continue; + } + + if (! compareConcepts(formatted, cameraItem)) { + psLogMsg(__func__, PS_LOG_WARN, "Concept %s is specified by value in the camera " + "format, but the values don't match.\n", name); + } + psFree(formatted); + } + psFree(nameSource); + } + + } + psFree(specsIter); + return true; +} + +bool p_pmConceptsWriteToDefaults(const psMetadata *specs, const pmFPA *fpa, const pmChip *chip, + const pmCell *cell, psMetadata *concepts) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(concepts, false); + + pmHDU *hdu = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hdu) { + return false; + } + psMetadata *cameraFormat = hdu->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *defaults = psMetadataLookupMetadata(&mdok, cameraFormat, "DEFAULTS"); // The DEFAULTS spec + if (!mdok || !defaults) { + return false; + } + + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *defaultItem = psMetadataLookup(defaults, name); // The item from the DEFAULTS + if (defaultItem) { + psMetadataItem *conceptItem = NULL; // The item from the concepts + if (defaultItem->type == PS_DATA_METADATA) { + // It's a menu --- need to look up the .DEPEND + psString dependName = NULL; // The concept name with ".DEPEND" on the end + psStringAppend(&dependName, "%s.DEPEND", defaultItem->name); + psString dependKey = psMetadataLookupStr(&mdok, defaults, dependName); // The keyword + if (!mdok || !dependKey || strlen(dependKey) == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Can't find %s in the DEFAULTS for %s --- ignored.\n", + dependName, name); + psFree(dependName); + continue; + } + psString dependValue = psMetadataLookupStr(&mdok, concepts, dependKey); // The value + if (!mdok || !dependValue || strlen(dependValue) == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Concept %s specified by %s isn't of type STR -- " + "ignored.\n", dependKey, dependName); + psFree(dependName); + continue; + } + psFree(dependName); + // Get the actual item of interest, and correct the name to match the concept name + defaultItem = psMetadataItemCopy(psMetadataLookup(defaultItem->data.md, dependValue)); + psFree(defaultItem->name); + defaultItem->name = psStringCopy(name); + } else { + psMemIncrRefCounter(defaultItem); + } + conceptItem = psMetadataLookup(concepts, name); // The item from the concepts + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_DEFAULTS, + cameraFormat, fpa, chip, cell); + if (!formatted) { + continue; + } + if (! compareConcepts(formatted, defaultItem)) { + psLogMsg(__func__, PS_LOG_WARN, "Concept %s is specified by the DEFAULTS in the camera " + "format, but the values don't match.\n", name); + } + psFree(defaultItem); + psFree(formatted); + } + } + psFree(specsIter); + return true; +} + + +bool p_pmConceptsWriteToHeader(const psMetadata *specs, const pmFPA *fpa, const pmChip *chip, + const pmCell *cell, const psMetadata *concepts) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(concepts, false); + + pmHDU *hdu = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hdu) { + return false; + } + psMetadata *cameraFormat = hdu->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *translation = psMetadataLookupMetadata(&mdok, cameraFormat, "TRANSLATION"); // The TRANSLATION spec + if (!mdok || !translation) { + return false; + } + + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + psMetadataItem *headerItem = psMetadataLookup(translation, name); // The item from the TRANSLATION + if (headerItem) { + if (headerItem->type != PS_DATA_STRING) { + psLogMsg(__func__, PS_LOG_WARN, "TRANSLATION keyword for concept %s isn't of type STR ---" + " ignored.", name); + continue; + } + psTrace("psModules.concepts", 3, "Writing %s to header %s\n", name, headerItem->data.str); + psMetadataItem *conceptItem = psMetadataLookup(concepts, name); // The item from the concepts + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_HEADER, + cameraFormat, fpa, chip, cell); + if (!formatted) { + continue; + } + writeHeader(hdu, headerItem->data.V, formatted); + psFree(formatted); + } + } + psFree(specsIter); + return true; +} + +// XXX Warning: This code has not been tested at all +bool p_pmConceptsWriteToDatabase(const psMetadata *specs, const pmFPA *fpa, const pmChip *chip, + const pmCell *cell, psDB *db, const psMetadata *concepts) +{ + PS_ASSERT_PTR_NON_NULL(specs, false); + PS_ASSERT_PTR_NON_NULL(concepts, false); + + if (!db) { + return false; + } + + #ifndef HAVE_PSDB + return false; + #else + + pmHDU *hdu = pmHDUGetLowest(fpa, chip, cell); // The HDU at the lowest level + if (!hdu) { + return false; + } + psMetadata *cameraFormat = hdu->format; // The camera format + bool mdok = true; // Status of MD lookup + psMetadata *database = psMetadataLookupMetadata(&mdok, cameraFormat, "DATABASE"); // The DATABASE spec + if (!mdok || !database) { + return false; + } + psMetadataIterator *specsIter = psMetadataIteratorAlloc(specs, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *specItem = NULL; // Item from the specs metadata + while ((specItem = psMetadataGetAndIncrement(specsIter))) { + pmConceptSpec *spec = specItem->data.V; // The specification + psString name = specItem->name; // The concept name + + psMetadataItem *dbItem = psMetadataLookup(database, name); // The item from the DATABASE + if (dbItem) { + if (dbItem->type != PS_DATA_METADATA) { + psLogMsg(__func__, PS_LOG_WARN, "DATABASE keyword for concept %s isn't of type METADATA " + "--- ignored.\n", name); + continue; + } + + psMetadataItem *conceptItem = psMetadataLookup(concepts, name); // The item from the concepts + psMetadataItem *formatted = conceptFormat(spec, conceptItem, PM_CONCEPT_SOURCE_DATABASE, + cameraFormat, fpa, chip, cell); + if (!formatted) { + continue; + } + + psMetadata *dbLookup = dbItem->data.V; // How to look up the value of interest + // Name of the table + const char *tableName = psMetadataLookupStr(&mdok, dbLookup, "TABLE"); + // Name of "where" columns + const char *givenCols = psMetadataLookupStr(&mdok, dbLookup, "GIVENDBCOL"); + // Values for "where" columns + const char *givenPS = psMetadataLookupStr(&mdok, dbLookup, "GIVENPS"); + + // Now, need to get the "given"s + if (strlen(givenCols) || strlen(givenPS)) { + psList *cols = psStringSplit(givenCols, ",;", true); // List of column names + psList *values = psStringSplit(givenPS, ",;", true); // List of value names for the columns + psMetadata *selection = psMetadataAlloc(); // The stuff to select in the DB + if (cols->n != values->n) { + psLogMsg(__func__, PS_LOG_WARN, + "The GIVENDBCOL and GIVENPS entries for %s do not have " + "the same number of entries --- ignored.\n", name); + } else { + // Iterators for the lists + psListIterator *colsIter = psListIteratorAlloc(cols, PS_LIST_HEAD, false); + psListIterator *valuesIter = psListIteratorAlloc(values, PS_LIST_HEAD, false); + char *column = NULL; // Name of the column + while ((column = psListGetAndIncrement(colsIter))) { + char *dependName = psListGetAndIncrement(valuesIter); // Name for the value + if (!strlen(column) || !strlen(name)) { + psLogMsg(__func__, PS_LOG_WARN, "One of the columns or value names for %s is " + " empty --- ignored.\n", name); + } else { + // Search for the value name + psMetadataItem *item = NULL; // The value + if (!item && cell) { + item = psMetadataLookup(cell->concepts, dependName); + } + if (!item && chip) { + item = psMetadataLookup(chip->concepts, dependName); + } + if (!item && fpa) { + item = psMetadataLookup(fpa->concepts, dependName); + } + if (! item) { + psLogMsg(__func__, PS_LOG_ERROR, + "Unable to find the value name %s for DB " + " lookup on %s --- ignored.\n", dependName, name); + } else { + // We need to create a new psMetadataItem. I don't think we can't simply + // hack the existing one, since that could conceivably cause memory leaks + psMetadataAddItem(selection, formatted, PS_LIST_TAIL, PS_META_REPLACE); + psFree(formatted); + } + } + psFree(dependName); + psFree(column); + } // Iterating through the columns + psFree(colsIter); + psFree(valuesIter); + + // Check first to make sure we're only going to touch one row + psArray *dbResult = psDBSelectRows(db, tableName, selection, 2); // Lookup result + // Note that we use limit=2 in order to test if there are multiple rows returned + if (! dbResult || dbResult->n == 0) { + psLogMsg(__func__, PS_LOG_WARN, "Unable to find any rows in DB for %s --- " + "ignored\n", name); + return false; + } else { + if (dbResult->n > 1) { + psLogMsg(__func__, PS_LOG_WARN, "Multiple rows returned in DB lookup for %s " + "--- ignored.\n", name); + } + // Update the DB + psMetadata *update = psMetadataAlloc(); + psMetadataAddItem(update, conceptItem, PS_LIST_HEAD, 0); + psDBUpdateRows(db, tableName, selection, update); + psFree(update); + return true; + } + } + psFree(cols); + psFree(values); + } // Doing the "given"s. + } + } + psFree(specsIter); + return true; + #endif +} + Index: /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.h =================================================================== --- /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.h (revision 12167) +++ /branches/rel-1-1/psModules/src/concepts/pmConceptsWrite.h (revision 12167) @@ -0,0 +1,64 @@ +/* @file pmConceptsWrite.h + * @brief Writing concepts to a variety of sources. + * + * @author Paul Price, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONCEPTS_WRITE_H +#define PM_CONCEPTS_WRITE_H + +/// @addtogroup Concepts Data Abstraction Concepts +/// @{ + +#include +#include "pmFPA.h" + +/// "Write" concepts to (actually, check against) the camera format file's CELLS. +/// +/// Examines the CELLS metadata in the camera format file for the current type of cell, and checks that the +/// concepts as defined there match the ones defined in the cell. A warning is produced if the concepts do +/// not match. +bool p_pmConceptsWriteToCells(const psMetadata *specs, ///< The concept specifications + const pmCell *cell, ///< The cell + const psMetadata *concepts ///< The concepts + ); + +/// "Write" concepts to (actually, check against) the camera format file's DEFAULTS. +/// +/// Examines the DEFAULTS metadata in the camera format file, and checks that the concepts as defined there +/// match the ones defined in the cell. A warning is produced if the concepts do not match. +bool p_pmConceptsWriteToDefaults(const psMetadata *specs, ///< The concept specifications + const pmFPA *fpa, ///< The FPA + const pmChip *chip, ///< The chip + const pmCell *cell, ///< The cell + const psMetadata *concepts ///< The concepts + ); + +/// "Write" concepts to (actually, add to, pending a later write) the FITS header. +/// +/// Examines the FITS header TRANSLATION metadata in the camera format file, and writes concepts to the +/// appropriate FITS headers in the HDU, in preparation for a future write of the HDU. +bool p_pmConceptsWriteToHeader(const psMetadata *specs, ///< The concept specifications + const pmFPA *fpa, ///< The FPA + const pmChip *chip, ///< The chip + const pmCell *cell, ///< The cell + const psMetadata *concepts ///< The concepts + ); + +/// Write concepts to the database. +/// +/// Examines the DATABASE metadata in the camera format file, and writes concepts to the database. +/// Warning: This function has not been tested; use at your own risk. +bool p_pmConceptsWriteToDatabase(const psMetadata *specs, ///< The concept specifications + const pmFPA *fpa, ///< The FPA + const pmChip *chip, ///< The chip + const pmCell *cell, ///< The cell + psDB *db,///< The database handle + const psMetadata *concepts ///< The concepts + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/config/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/config/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/config/.cvsignore (revision 12167) @@ -0,0 +1,8 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo +pmErrorCodes.c +pmErrorCodes.h Index: /branches/rel-1-1/psModules/src/config/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/config/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/config/Makefile.am (revision 12167) @@ -0,0 +1,31 @@ +noinst_LTLIBRARIES = libpsmodulesconfig.la + +libpsmodulesconfig_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) +libpsmodulesconfig_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulesconfig_la_SOURCES = \ + pmConfig.c \ + pmConfigRecipes.c \ + pmConfigCamera.c \ + pmConfigCommand.c \ + pmVersion.c \ + pmErrorCodes.c + +pkginclude_HEADERS = \ + pmConfig.h \ + pmConfigRecipes.h \ + pmConfigCamera.h \ + pmConfigCommand.h \ + pmVersion.h \ + pmErrorCodes.h + +# Error codes. +BUILT_SOURCES = pmErrorCodes.h pmErrorCodes.c +CLEANFILES = *~ pmErrorCodes.h pmErrorCodes.c + +pmErrorCodes.h : pmErrorCodes.dat pmErrorCodes.h.in + $(ERRORCODES) --data=pmErrorCodes.dat --outdir=. pmErrorCodes.h + +pmErrorCodes.c : pmErrorCodes.dat pmErrorCodes.c.in pmErrorCodes.h + $(ERRORCODES) --data=pmErrorCodes.dat --outdir=. pmErrorCodes.c + +EXTRA_DIST = pmErrorCodes.h.in pmErrorCodes.dat pmErrorCodes.c.in Index: /branches/rel-1-1/psModules/src/config/pmConfig.c =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfig.c (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfig.c (revision 12167) @@ -0,0 +1,1208 @@ +/** @file pmConfig.h + * + * @author PAP (IfA) + * @author EAM (IfA) + * + * @version $Revision: 1.77 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "pmConfig.h" +#include "pmErrorCodes.h" +#include "pmConfigRecipes.h" +#include "pmConfigCamera.h" + +#ifdef HAVE_NEBCLIENT +#include +#endif // ifdef HAVE_NEBCLIENT + +#define PS_SITE "PS_SITE" // Name of the environment variable containing the site config file +#define PS_DEFAULT_SITE ".ipprc" // Default site config file + +static bool readCameraConfig = true; // Read the camera config on startup (with pmConfigRead)? +static psArray *configPath = NULL; // Search path for configuration files + +bool pmConfigReadParamsSet(bool newReadCameraConfig) +{ + bool oldReadCameraConfig = readCameraConfig; + readCameraConfig = newReadCameraConfig; + return oldReadCameraConfig; +} + +static void configFree(pmConfig *config) +{ + psFree(config->site); + psFree(config->files); + psFree(config->camera); + psFree(config->cameraName); + psFree(config->format); + psFree(config->formatName); + psFree(config->recipes); + psFree(config->recipeSymbols); + psFree(config->arguments); + psFree(config->database); +} + +pmConfig *pmConfigAlloc(int *argc, char **argv) +{ + pmConfig *config = psAlloc(sizeof(pmConfig)); + (void)psMemSetDeallocator(config, (psFreeFunc)configFree); + + // Initialise + config->site = NULL; + config->camera = NULL; + config->cameraName = NULL; + config->format = NULL; + config->formatName = NULL; + config->recipes = psMetadataAlloc(); + config->recipesRead = PM_RECIPE_SOURCE_NONE; + config->recipeSymbols = psMetadataAlloc(); + config->arguments = psMetadataAlloc(); + config->database = NULL; + config->argc = argc; + config->argv = argv; + config->defaultRecipe = NULL; + + // the file structure is used to carry pmFPAfiles + config->files = psMetadataAlloc (); + return config; +} + +// Resolve environment variables within a directory name; returns the resolved directory string. +// The returned string is likely a new pointer; the old pointer should be freed by psStringSubstitute. +static psString resolveEnvVar(psString dir // Directory to check for environment variables + ) +{ + char *envStart; // Start of any environment variable + while ((envStart = strchr(dir, '$'))) { + char *envName = envStart + 1; // Start of the environment variable name + if (envName[0] == '\0') { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Path %s contains a bad environment variable.\n", dir); + return NULL; + } + if (envName[0] == '{') { + envName++; + if (envName[0] == '\0') { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Path %s contains a bad environment variable.\n", dir); + return NULL; + } + } + char *envStop = strpbrk(envStart, "}/"); // End of the environment variable + ssize_t nameLength = envStop ? envStop - envName : strlen(envName); // Length of the name + psString name = psStringNCopy(envName, nameLength); // The environment variable name + char *value = getenv(name); // Value of the environment variable + psFree(name); + psString valueSlash = NULL; // Value with appended slash + psStringAppend(&valueSlash, "%s/", value); + + ssize_t envvarLength = envStop ? envStop - envStart : strlen(envStart); // Length, w/o '}' + psString envvar = psStringNCopy(envStart, envvarLength + 1); // Environment variable, with $, {, } + + psTrace("psModules.config", 7, "Replacing %s with %s in directory %s\n", envvar, valueSlash, dir); + psStringSubstitute(&dir, valueSlash, envvar); + psFree(envvar); + psFree(valueSlash); + } + + return dir; +} + +void pmConfigSet(const char *path) +{ + pmConfigDone(); + + psList *list = psStringSplit(path, ":", false); + configPath = psListToArray(list); + // Resolve environment variables + for (long i = 0; i < configPath->n; i++) { + configPath->data[i] = resolveEnvVar(configPath->data[i]); + psTrace("psModules.config", 4, "Path %ld: %s\n", i, (char*)configPath->data[i]); + } + psFree(list); +} + +void pmConfigDone(void) +{ + psFree(configPath); + configPath = NULL; +} + +bool pmConfigFileRead(psMetadata **config, const char *name, const char *description) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_STRING_NON_EMPTY(name, false); + PS_ASSERT_STRING_NON_EMPTY(description, false); + + char *realName = NULL; + unsigned int numBadLines = 0; + struct stat filestat; + + psTrace("psModules.config", 3, "Loading %s configuration from file %s\n", + description, name); + + uid_t uid = getuid(); + gid_t gid = getgid(); + + // we try: name, path[0]/name, path[1]/name, ... + // find the first existing entry in the path (starting with the bare name) + realName = psStringCopy (name); + psTrace ("psModules.config", 8, "trying %s\n", realName); + + int status = stat (realName, &filestat); + if (status == 0) { + if ((uid == filestat.st_uid) && (filestat.st_mode & S_IRUSR)) { + goto found; + } + if ((gid == filestat.st_gid) && (filestat.st_mode & S_IRGRP)) { + goto found; + } + if (filestat.st_mode & S_IROTH) { + goto found; + } + } + psFree (realName); + + if (configPath == NULL) { + psError(PS_ERR_IO, true, "Cannot find %s configuration file (%s) in path\n", description, name); + return false; + } + + for (int i = 0; i < configPath->n; i++) { + realName = psStringCopy (configPath->data[i]); + psStringAppend (&realName, "/%s", name); + psTrace ("psModules.config", 8, "trying %s\n", realName); + + status = stat (realName, &filestat); + if (status == 0) { + if ((uid == filestat.st_uid) && (filestat.st_mode & S_IRUSR)) { + goto found; + } + if ((gid == filestat.st_gid) && (filestat.st_mode & S_IRGRP)) { + goto found; + } + if (filestat.st_mode & S_IROTH) { + goto found; + } + } + psFree (realName); + } + + psError(PS_ERR_IO, true, "Cannot find %s configuration file %s in path\n", description, name); + return false; + +found: + *config = psMetadataConfigRead(NULL, &numBadLines, realName, true); + if (numBadLines > 0) { + psError(PS_ERR_IO, false, "%d bad lines in %s configuration file (%s)", + numBadLines, description, realName); + psFree (realName); + + return false; + } + if (!*config) { + psError(PS_ERR_IO, true, "Unable to read %s configuration from %s", + description, realName); + psFree (realName); + return false; + } + + psFree (realName); + return true; +} + +// Read metadata config files in a metadata +// The metadata contains file names, which will be replaced with the metadata that are in the files. +static bool metadataReadFiles(psMetadata *source, // Source metadata + const char *description // Description, for error messages + ) +{ + assert(source); + psMetadataIterator *iter = psMetadataIteratorAlloc(source, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + if (item->type == PS_DATA_METADATA) { + continue; // We've already read it + } + if (item->type != PS_DATA_STRING) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Element %s in %s metadata is not of type STR.\n", + item->name, description); + continue; + } + + psTrace("config", 2, "Reading %s %s: %s\n", description, item->name, item->data.str); + psMetadata *new = NULL; // New metadata + if (!pmConfigFileRead(&new, item->data.str, item->name)) { + psLogMsg("psModules.config", PS_LOG_WARN, "Trouble reading reading %s %s --- " + "ignored.\n", description, item->name); + psFree(new); + psMetadataRemoveKey(source, item->name); // Take it out, so it will not trouble us again + continue; + } + + // Muck around under the hood to replace the filename with the metadata; don't try this at home, kids + item->type = PS_DATA_METADATA; + psFree(item->data.str); + item->data.md = new; + } + psFree(iter); + + return true; +} + +// Read the formats for a camera +static bool cameraReadFormats(psMetadata *camera, // Camera for which to read the formats + const char *name // Name of the camera, for error messages + ) +{ + assert(camera); + assert(name); + + bool mdok; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, camera, "FORMATS"); // Formats + if (!mdok || !formats) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FORMATS in camera configuration %s.\n", name); + return false; + } + if (!metadataReadFiles(formats, "camera format")) { + psError(PS_ERR_UNKNOWN, false, "Unable to read formats within camera configuration %s.\n", name); + return false; + } + + return true; +} + + +pmConfig *pmConfigRead(int *argc, char **argv, char *defaultRecipe) +{ + PS_ASSERT_PTR_NON_NULL(argc, NULL); + PS_ASSERT_INT_POSITIVE(*argc, NULL); + PS_ASSERT_PTR_NON_NULL(argv, NULL); + + pmConfig *config = pmConfigAlloc(argc, argv); // The configuration, containing site, camera and recipes + config->defaultRecipe = defaultRecipe; + + // + // The following section of code attempts to determine which file is + // the configuration file. At the end of this code block, the siteName + // variable will contain the name of the configuration file. + // + char *siteName = NULL; + // + // First, try command line + // + psS32 argNum = psArgumentGet(*config->argc, config->argv, "-site"); + if (argNum != 0) { + // + // We remove the "-site" argument from argv. Then + // we look for the next argument, which should be the filename, and + // remove it as well. + // + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-site command-line switch provided without the required filename --- ignored.\n"); + } else { + siteName = psStringCopy(config->argv[argNum]); + psArgumentRemove(argNum, config->argc, config->argv); + } + } + // + // Next, try environment variable + // + if (!siteName) { + siteName = getenv(PS_SITE); + if (siteName) { + siteName = psStringCopy (siteName); + } + } + + // + // Last chance is ~/.ipprc + // + if (!siteName) { + char *home = getenv("HOME"); + siteName = psStringCopy(home); + psStringAppend(&siteName, "/%s", PS_DEFAULT_SITE); + } + + + // We have the configuration filename; now we read and parse the config + // file and store in psMetadata struct site. + // + + if (!pmConfigFileRead(&config->site, siteName, "site")) { + psFree(config); + return NULL; + } + + // Set options based on the site configuration. + { + bool mdok = true; // Status of MD lookup result + + // Initialise the psLib time handling + psString timeName = psMetadataLookupStr(&mdok, config->site, "TIME"); + if (mdok && timeName) + { + psTrace("psModules.config", 7, "Initialising psTime with file %s\n", timeName); + // XXX: PAP had a call to psLibInit is PRODUCTION not set. Why? + psTimeInitialize(timeName); + } + + + // Set logging level + int logLevel = psMetadataLookupS32(&mdok, config->site, "LOGLEVEL"); + if (mdok && logLevel >= 0) + { + psTrace("psModules.config", 7, "Setting log level to %d\n", logLevel); + psLogSetLevel(logLevel); + } + + + // Set logging format + psString logFormat = psMetadataLookupStr(&mdok, config->site, "LOGFORMAT"); + if (mdok && logFormat) + { + psTrace("psModules.config", 7, "Setting log format to %s\n", logFormat); + psLogSetFormat(logFormat); + } + + argNum = psArgumentGet(*config->argc, config->argv, "-log"); + if (argNum > 0) + { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, "-log command-line switch provided without the " + "required log destination --- ignored.\n"); + } else { + if (!psLogSetDestination(psMessageDestination(config->argv[argNum]))) { + psLogMsg("psModules.config", PS_LOG_WARN, "Unable to set log destination to %s\n", + config->argv[argNum]); + } + psArgumentRemove(argNum, config->argc, config->argv); + } + } else + { + // Set logging destination + psString logDest = psMetadataLookupStr(&mdok, config->site, "LOGDEST"); + if (mdok && logDest && strlen(logDest) > 0) { + // XXX: Only stdout and stderr are provided for now; this section should be + // expanded in the future to do files, and perhaps even sockets. + if (!psLogSetDestination(psMessageDestination(logDest))) { + psLogMsg("psModules.config", PS_LOG_WARN, "Unable to set log destination to %s\n", + config->argv[argNum]); + } + } + } + + // Set trace levels + psMetadata *trace = psMetadataLookupMetadata(&mdok, config->site, "TRACE"); + if (mdok && trace) + { + psMetadataIterator *traceIter = psMetadataIteratorAlloc(trace, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *traceItem = NULL; // Item from MD iteration + while ((traceItem = psMetadataGetAndIncrement(traceIter))) { + if (traceItem->type != PS_DATA_S32) { + psLogMsg("psModules.config", PS_LOG_WARN, + "The level for trace component %s is not of type S32 (%x)\n", + traceItem->name, traceItem->type); + continue; + } + psTrace("psModules.config", 7, "Setting trace level for %s to %d\n", traceItem->name, + traceItem->data.S32); + psTraceSetLevel(traceItem->name, traceItem->data.S32); + } + psFree(traceIter); + } + + // Set trace formats + psString traceFormat = psMetadataLookupStr(&mdok, config->site, "TRACEFORMAT"); + if (mdok && traceFormat) + { + psTrace("psModules.config", 7, "Setting trace format to %s\n", traceFormat); + psTraceSetFormat(traceFormat); + } + + // Set trace destinations + #ifndef PS_NO_TRACE + psString traceDest = psMetadataLookupStr(&mdok, config->site, "TRACEDEST"); + if (mdok && traceDest && strlen(traceDest) > 0) + { + psTrace("psModules.config", 7, "Setting trace destination to %s\n", traceDest); + // XXX: Only stdout and stderr are provided for now; this section should be + // expanded in the future to do files, and perhaps even sockets. + if (!psTraceSetDestination(psMessageDestination(traceDest))) { + psLogMsg("psModules.config", PS_LOG_WARN, "Unable to set trace destination to %s\n", traceDest); + + } + } + #endif + + // Allow command line options to override defaults for logging. + // XXX: Is it appropriate to use the ArgVerbosity function for this? + // A: it removes the options from the command line. + // B: will the pmConfigRead function always be called on initialization. + // + psArgumentVerbosity(config->argc, config->argv); + // XXX: substitute the string for the default log level for "2". + } + + // define the config-file search path (configPath). Ensure that + // it contains the directory where we found the config file in + // the first place + if (configPath) { + pmConfigDone(); + } + + psString siteNameDir = psStringCopy(dirname(siteName)); + psFree(siteName); + + psString path = psMetadataLookupStr(NULL, config->site, "PATH"); + if (path) { + psStringAppend(&path, ":%s", siteNameDir); + } else { + path = psMemIncrRefCounter(siteNameDir); + } + pmConfigSet(path); + psFree(siteNameDir); + + // Next, we do a similar thing for the camera configuration file. The + // file is read and parsed into psMetadata struct "camera". + // + argNum = psArgumentGet(*config->argc, config->argv, "-camera"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-camera command-line switch provided without the required camera or filename --- " + "ignored.\n"); + } else { + char *cameraFile = config->argv[argNum]; // The camera configuration file to read + + // look for a symbolic camera name in the CAMERAS metadata + // otherwise fall back to trying the -camera option as a literal + // filename + bool mdok = true; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, config->site, "CAMERAS"); + if (mdok && cameras) { + char *newFile = psMetadataLookupStr(NULL, cameras, cameraFile); // The filename + if (newFile) { + cameraFile = newFile; + } + } else { + psError(PS_ERR_IO, false, "Unable to find CAMERAS in site configuration.\n"); + psFree(config); + return NULL; + } + + pmConfigFileRead(&config->camera, cameraFile, "camera"); + psArgumentRemove(argNum, config->argc, config->argv); + + // Read in the formats + if (!cameraReadFormats(config->camera, cameraFile)) { + psError(PS_ERR_UNKNOWN, false, "Unable to read formats within camera configuration %s.\n", + cameraFile); + psFree(config); + return NULL; + } + + psMetadataAddMetadata(cameras, PS_LIST_HEAD, cameraFile, PS_META_REPLACE, + "Camera specified on command line", config->camera); + + if (!pmConfigCameraMosaickedVersions(config->site, cameraFile)) { + psError(PS_ERR_UNKNOWN, false, + "Unable to generate mosaicked versions of specified camera %s.\n", + cameraFile); + psFree(config); + return NULL; + } + } + } + + // Read the camera configurations, if not already defined, and not turned off + if (!config->camera && readCameraConfig) { + bool mdok; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, config->site, "CAMERAS"); // List of cameras + if (!mdok || !cameras) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find CAMERAS in the site configuration.\n"); + return false; + } + + if (!metadataReadFiles(cameras, "camera configuration")) { + psError(PS_ERR_UNKNOWN, false, "Unable to read cameras within site configuration.\n"); + psFree(config); + return NULL; + } + + // Now fill in the formats + psMetadataIterator *iter = psMetadataIteratorAlloc(cameras, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + assert(item->type == PS_DATA_METADATA); + if (!cameraReadFormats(item->data.md, item->name)) { + psWarning("Unable to read formats for camera %s: removed.\n", item->name); + psMetadataRemoveKey(cameras, item->name); + } + } + psFree(iter); + + if (!pmConfigCameraMosaickedVersionsAll(config->site)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate mosaicked versions of cameras.\n"); + psFree(config); + return NULL; + } + } + + // Load the recipes from the camera file, if appropriate + if(!pmConfigReadRecipes(config, PM_RECIPE_SOURCE_SITE | PM_RECIPE_SOURCE_CAMERA)) { + psError(PS_ERR_IO, false, "Failed to read recipes from camera file"); + psFree(config); + return NULL; + } + + // load command-line options of the form -recipe NAME RECIPE + pmConfigLoadRecipeArguments(config); + + // read in command-line options to specific recipe values + pmConfigLoadRecipeOptions(config, "-D"); + pmConfigLoadRecipeOptions(config, "-Di"); + pmConfigLoadRecipeOptions(config, "-Df"); + pmConfigLoadRecipeOptions(config, "-Db"); + + + // check for values that override DB* keywords + argNum = psArgumentGet(*config->argc, config->argv, "-dbserver"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-dbserver command-line switch provided without the required server name --- "); + } else { + char *dbserver = config->argv[argNum]; // The camera configuration file to read + if (!psMetadataAddStr(config->site, PS_LIST_TAIL, "DBSERVER", PS_META_REPLACE, NULL, dbserver)) { + psLogMsg("psModules.config", PS_LOG_WARN, + "failed to overwrite .ipprc DBSERVER value --- "); + } + + psArgumentRemove(argNum, config->argc, config->argv); + } + } + + argNum = psArgumentGet(*config->argc, config->argv, "-dbname"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-dbname command-line switch provided without the required database name --- "); + } else { + char *dbname = config->argv[argNum]; // The camera configuration file to read + if (!psMetadataAddStr(config->site, PS_LIST_TAIL, "DBNAME", PS_META_REPLACE, NULL, dbname)) { + psLogMsg("psModules.config", PS_LOG_WARN, + "failed to overwrite .ipprc DBNAME value --- "); + } + + psArgumentRemove(argNum, config->argc, config->argv); + } + } + + argNum = psArgumentGet(*config->argc, config->argv, "-dbuser"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-dbuser command-line switch provided without the required database name --- "); + } else { + char *dbuser = config->argv[argNum]; // The camera configuration file to read + if (!psMetadataAddStr(config->site, PS_LIST_TAIL, "DBUSER", PS_META_REPLACE, NULL, dbuser)) { + psLogMsg("psModules.config", PS_LOG_WARN, + "failed to overwrite .ipprc DBUSER value --- "); + } + + psArgumentRemove(argNum, config->argc, config->argv); + } + } + + argNum = psArgumentGet(*config->argc, config->argv, "-dbpassword"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-dbpassword command-line switch provided without the required password --- "); + } else { + char *dbpassword = config->argv[argNum]; // The camera configuration file to read + if (!psMetadataAddStr(config->site, PS_LIST_TAIL, "DBPASSWORD", PS_META_REPLACE, NULL, dbpassword)) { + psLogMsg("psModules.config", PS_LOG_WARN, + "failed to overwrite .ipprc DBPASSWORD value --- "); + } + + psArgumentRemove(argNum, config->argc, config->argv); + } + } + + argNum = psArgumentGet(*config->argc, config->argv, "-dbport"); + if (argNum > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum >= *config->argc) { + psLogMsg("psModules.config", PS_LOG_WARN, + "-dbpport command-line switch provided without the required port number --- "); + } else { + char *dbport = config->argv[argNum]; // The camera configuration file to read + if (!psMetadataAddS32(config->site, PS_LIST_TAIL, "DBPORT", PS_META_REPLACE, NULL, (psS32)atoi(dbport))) { + psLogMsg("psModules.config", PS_LOG_WARN, + "failed to overwrite .ipprc DBPORT value --- "); + } + + psArgumentRemove(argNum, config->argc, config->argv); + } + } + + + psErrorClear(); // we may have failed to find some items in the metadata + + return config; +} + + +// XXX aren't these (return false) below errors: call psError? +bool pmConfigValidateCameraFormat(bool *valid, const psMetadata *cameraFormat, const psMetadata *header) +{ + PS_ASSERT_PTR_NON_NULL(cameraFormat, false); + PS_ASSERT_PTR_NON_NULL(header, false); + + // Read the rule for that camera format + bool mdStatus = true; + + psMetadata *rule = psMetadataLookupMetadata(&mdStatus, cameraFormat, "RULE"); + if (! mdStatus || ! rule) { + psError(PS_ERR_UNKNOWN, false, "Unable to read rule for camera."); + *valid = false; + return false; + } + + // Apply the rules + psMetadataIterator *ruleIter = psMetadataIteratorAlloc(rule, PS_LIST_HEAD, NULL); // Rule iterator + psMetadataItem *ruleItem = NULL; // Item from the metadata + + *valid = true; + while (*valid && (ruleItem = psMetadataGetAndIncrement(ruleIter))) { + // Check for the existence of the rule + psMetadataItem *headerItem = psMetadataLookup(header, ruleItem->name); + if (! headerItem) { + // rule item not found in header + psTrace("psModules.config", 5, "Can't find %s", ruleItem->name); + *valid = false; + } + + // Check to see if the rule works + if (headerItem && !psMetadataItemCompare(headerItem, ruleItem)) { + psTrace("psModules.config", 5, "%s doesn't match.", ruleItem->name); + *valid = false; + } + } // Iterating through the RULEs + + psFree(ruleIter); + return true; +} + +// Given a camera and a header, see if any of the camera formats match the header +static bool formatFromHeader(psMetadata **format, // Format to return + psString *name, // Name to return + psMetadata *camera, // Camera configuration + const psMetadata *header, // FITS header + const char *cameraName // Name of camera + ) +{ + assert(format); + assert(camera); + assert(header); + assert(cameraName && strlen(cameraName) > 0); + + bool result = false; // Did we find the first match? + + // Read the list of formats + bool mdok = true; // Status of MD lookup + psMetadata *formats = psMetadataLookupMetadata(&mdok, camera, "FORMATS"); // List of formats + if (!mdok || !formats) { + psError(PS_ERR_UNKNOWN, false, "Unable to find list of FORMATS in camera %s", cameraName); + return false; + } + + if (!metadataReadFiles(formats, "camera format")) { + psError(PS_ERR_UNKNOWN, false, "Unable to read cameras formats within camera configuration.\n"); + return false; + } + + // Iterate over the formats + psMetadataIterator *formatsIter = psMetadataIteratorAlloc(formats, PS_LIST_HEAD, NULL); + psMetadataItem *formatsItem = NULL; // Item from formats + while ((formatsItem = psMetadataGetAndIncrement(formatsIter))) { + assert(formatsItem->type == PS_DATA_METADATA); // Since we have just read it in or deleted it + psMetadata *testFormat = formatsItem->data.md; // Format to test against + + psTrace("psModules.config", 5, "trying format %s", formatsItem->name); + + bool valid = false; + if (!pmConfigValidateCameraFormat(&valid, testFormat, header)) { + psError (PS_ERR_UNKNOWN, false, "Error in config scripts for camera %s, format %s\n", + cameraName, formatsItem->name); + return false; + } + if (valid) { + if (!*format) { + psLogMsg("psModules.config", PS_LOG_INFO, "Camera %s, format %s matches header.\n", + cameraName, formatsItem->name); + *format = psMemIncrRefCounter(testFormat); + *name = psStringCopy(formatsItem->name); + result = true; + } else { + psLogMsg("psModules.config", PS_LOG_WARN, + "Camera %s, format %s also matches header --- ignored.\n", + cameraName, formatsItem->name); + } + } + } + psFree(formatsIter); + return result; +} + + +psMetadata *pmConfigCameraFormatFromHeader(pmConfig *config, const psMetadata *header) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(header, NULL); + + psMetadata *format = NULL; // The winning format + psString name = NULL; // Name of the winning format + + // If we don't know what sort of camera we have, we try all that we know + if (! config->camera) { + bool mdok; // Metadata lookup status + psMetadata *cameras = psMetadataLookupMetadata(&mdok, config->site, "CAMERAS"); + if (! mdok || !cameras) { + psError(PS_ERR_IO, true, "Unable to find CAMERAS in the configuration."); + return NULL; + } + + if (!metadataReadFiles(cameras, "camera configuration")) { + psError(PS_ERR_UNKNOWN, false, "Unable to read cameras within site configuration.\n"); + return NULL; + } + + // Iterate over the cameras + psMetadataIterator *camerasIter = psMetadataIteratorAlloc(cameras, PS_LIST_HEAD, NULL); + psMetadataItem *camerasItem = NULL; // Item from the metadata + while ((camerasItem = psMetadataGetAndIncrement(camerasIter))) { + // Open the camera information + psTrace("psModules.config", 3, "Inspecting camera %s (%s)\n", camerasItem->name, + camerasItem->comment); + assert(camerasItem->type == PS_DATA_METADATA); // It should be because we've read it in or deleted + psMetadata *testCamera = camerasItem->data.md; // Camera to test against what we've got: + if (formatFromHeader(&format, &name, testCamera, header, camerasItem->name)) { + config->camera = psMemIncrRefCounter(testCamera); + config->cameraName = psStringCopy(camerasItem->name); + config->formatName = name; + config->format = format; + } else { + psErr *error = psErrorLast(); + if (error->code != PS_ERR_NONE) { + psError(PS_ERR_IO, false, "Error reading camera config data for %s", camerasItem->name); + return NULL; + } + psFree(error); + } + } // Done looking at all cameras + psFree(camerasIter); + + if (! config->camera) { + psError(PS_ERR_IO, false, "Unable to find a camera that matches input FITS header!"); + return NULL; + } + + // Now we have the camera, we can read the recipes + pmConfigReadRecipes(config, PM_RECIPE_SOURCE_CAMERA | PM_RECIPE_SOURCE_CL); + return psMemIncrRefCounter(format); + } + + // Otherwise, try the specific camera + if (!formatFromHeader(&format, &name, config->camera, header, config->cameraName)) { + psError(PS_ERR_IO, true, "Unable to find a format with the specified camera (%s) that matches the " + "given header.\n", config->cameraName); + return NULL; + } + + // Free the format and name just in case they've already been allocated + if (config->format || config->formatName) { + if (config->format != format || strcmp(config->formatName, name) != 0) { + psWarning("Default camera format configuration has changed!\n"); + } + psFree(config->format); + psFree(config->formatName); + } + config->formatName = name; + config->format = format; + return psMemIncrRefCounter(format); +} + +// Return the requested camera configuration +psMetadata *pmConfigCameraByName(pmConfig *config, const char *cameraName) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_STRING_NON_EMPTY(cameraName, NULL); + + psMetadata *cameras = psMetadataLookupMetadata(NULL, config->site, "CAMERAS"); + if (!cameras) { + psError(PS_ERR_IO, true, "Unable to find CAMERAS in the configuration."); + return NULL; + } + + char *cameraPath = psMetadataLookupStr(NULL, cameras, cameraName); + if (!cameraPath) { + psError(PS_ERR_IO, true, "Unable to find requested CAMERA in the configuration."); + return NULL; + } + + psMetadata *camera = NULL; // Camera to test against what we've got: + + if (!pmConfigFileRead(&camera, cameraPath, cameraName)) { + psLogMsg("psModules.config", PS_LOG_WARN, "Trouble reading reading camera configuration %s", cameraName); + psFree(camera); + return NULL; + } + + return camera; +} + +psDB *pmConfigDB(pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->site, NULL); + + #ifndef HAVE_PSDB + + return NULL; + #else + + psBool mdStatus01 = false; + psBool mdStatus02 = false; + psBool mdStatus03 = false; + psBool mdStatus04 = false; + psBool mdStatus05 = false; + + // XXX leaky strings + psString dbServer = psMetadataLookupStr(&mdStatus01, config->site, "DBSERVER"); + psString dbUsername = psMetadataLookupStr(&mdStatus02, config->site, "DBUSER"); + psString dbPassword = psMetadataLookupStr(&mdStatus03, config->site, "DBPASSWORD"); + psString dbName = psMetadataLookupStr(&mdStatus04, config->site, "DBNAME"); + psS32 dbPort = psMetadataLookupS32(&mdStatus05, config->site, "DBPORT"); + if (!mdStatus05) { + dbPort = 0; + } + if (!(mdStatus01 && mdStatus02 && mdStatus03 && mdStatus04)) { + psLogMsg("psModules.config", PS_LOG_WARN, + "Could not determine database server, name, user, and password from site metadata.\n"); + return NULL; + } + + return psDBInit(dbServer, dbUsername, dbPassword, dbName, dbPort); + #endif +} + + +bool pmConfigConformHeader(psMetadata *header, const psMetadata *format) +{ + PS_ASSERT_PTR_NON_NULL(header, false); + PS_ASSERT_PTR_NON_NULL(format, false); + + bool mdok = true; // Status of MD lookup + psMetadata *rules = psMetadataLookupMetadata(&mdok, format, "RULE"); // How to identify this format + if (!mdok || !rules) { + psError(PS_ERR_IO, true, "Unable to find RULE in camera format.\n"); + return false; + } + + psMetadataIterator *rulesIter = psMetadataIteratorAlloc(rules, PS_LIST_HEAD, NULL); // Iterator for rules + psMetadataItem *rulesItem = NULL; // Item from iteration + while ((rulesItem = psMetadataGetAndIncrement(rulesIter))) { + psMetadataItem *newItem = psMetadataItemCopy(rulesItem); // Copy of item + psMetadataAddItem(header, newItem, PS_LIST_TAIL, PS_META_REPLACE); + psFree(newItem); // Drop reference + } + psFree(rulesIter); + + return true; +} + +psArray *pmConfigFileSets(pmConfig *config, const char *file, const char *list) +{ + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->argc, NULL); + PS_ASSERT_INT_NONNEGATIVE(*config->argc, NULL); + PS_ASSERT_PTR_NON_NULL(config->argv, NULL); + PS_ASSERT_STRING_NON_EMPTY(file, NULL); + PS_ASSERT_STRING_NON_EMPTY(list, NULL); + + int Narg; + + // we load all input files onto a psArray, to be parsed later + psArray *input = psArrayAllocEmpty(16); + + // load the list of filenames the supplied file + // maybe a comma-separated list of words + // each word may be a glob: "file*.fits" + if ((Narg = psArgumentGet (*config->argc, config->argv, file))) { + + // select the word after 'file' and split by comma + psArgumentRemove (Narg, config->argc, config->argv); + psArray *words = psStringSplitArray (config->argv[Narg], ",", true); + psArgumentRemove (Narg, config->argc, config->argv); + + // parse the word as a glob + glob_t globList; + for (int i = 0; i < words->n; i++) { + globList.gl_offs = 0; + glob (words->data[i], 0, NULL, &globList); + + // if the glob does not match, save the literal word: + // otherwise save all glob matches + if (globList.gl_pathc == 0) { + psArrayAdd (input, 16, words->data[i]); + } else { + for (int j = 0; j < globList.gl_pathc; j++) { + char *filename = psStringCopy (globList.gl_pathv[j]); + psArrayAdd (input, 16, filename); + psFree (filename); + } + } + } + psFree (words); + } + + // load the list from the supplied text file + if ((Narg = psArgumentGet (*config->argc, config->argv, list))) { + int nItems; + char line[1024]; // XXX limits the list lines to 1024 chars + char word[1024]; + char *filename; + + psArgumentRemove (Narg, config->argc, config->argv); + FILE *f = fopen (config->argv[Narg], "r"); + if (f == NULL) { + psAbort("unable to open specified list file"); + } + while (fgets (line, 1024, f) != NULL) { + nItems = sscanf (line, "%s", word); + switch (nItems) { + case 0: + break; + case 1: + filename = psStringCopy (word); + psArrayAdd (input, 16, filename); + psFree (filename); + break; + default: + // rigid format, no comments allowed? + psAbort("error parsing input list file"); + break; + } + } + psArgumentRemove (Narg, config->argc, config->argv); + } + + return input; +} + +bool pmConfigFileSetsMD(psMetadata *metadata, pmConfig *config, const char *name, + const char *file, const char *list) +{ + PS_ASSERT_PTR_NON_NULL(metadata, false); + PS_ASSERT_PTR_NON_NULL(config, false); + PS_ASSERT_STRING_NON_EMPTY(name, NULL); + PS_ASSERT_STRING_NON_EMPTY(file, NULL); + PS_ASSERT_STRING_NON_EMPTY(list, NULL); + + psErrorClear(); // pmConfigFileSets may or may not call psError, so + // if files->n == 0 we'll want to call psError(..., false, ...) + psArray *files = pmConfigFileSets(config, file, list); + if (files->n == 0) { + // psError(PS_ERR_IO, false, "pmConfigFileSets failed to find %s in the argument list", name); + psFree (files); + return false; + } + + psMetadataAddPtr(metadata, PS_LIST_TAIL, name, PS_DATA_ARRAY, "", files); + psFree (files); + return true; +} + +// convert the supplied name, create a new output psString +psString pmConfigConvertFilename(const char *filename, const pmConfig *config, bool create) +{ + PS_ASSERT_STRING_NON_EMPTY(filename, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + + // strip file:// from front of name + if (!strncasecmp(filename, "file:", strlen("file:"))) { + psString newName = psStringCopy(filename); + + char *point = newName + strlen("file:"); + while (*point == '/') + point ++; + char *tmpName = NULL; + psStringAppend (&tmpName, "/%s", point); + psFree (newName); + newName = tmpName; + + // open the to create it if it doesn't exist. This could cause a + // strange looking error if we can't access the file. + // XXX perhaps we should try access() first? -JH + int fd = open(newName, O_RDONLY|O_CREAT); + if (fd < 0) { + psError(PS_ERR_IO, true, "unable to open() file %s", newName); + psFree(newName); + return NULL; + } + if (close(fd) < 0) { + psError(PS_ERR_IO, true, "unable to open() file %s", newName); + psFree(newName); + return NULL; + } + + return newName; + } + + // replace path://PATH with matched datapath + if (!strncasecmp(filename, "path://", strlen("path://"))) { + PS_ASSERT_METADATA_NON_NULL(config->site, NULL); + + psString newName = psStringCopy(filename); + + // filename should be of the form: path://PATH/rest/of/file + // replace PATH with matching name from config->site:DATAPATH + psMetadata *datapath = psMetadataLookupPtr (NULL, config->site, "DATAPATH"); + if (datapath == NULL) { + psError(PS_ERR_UNKNOWN, true, "DATAPATH is not defined in config.site"); + psFree (newName); + return NULL; + } + + char *point = newName + strlen("path://"); + char *mark = strchr (point, '/'); + if (mark == NULL) { + psError(PS_ERR_UNKNOWN, true, "syntax error in PATH-style name %s", newName); + psFree (newName); + return false; + } + + psString path = psStringNCopy (point, mark - point); + char *realpath = psMetadataLookupStr (NULL, datapath, path); + if (realpath == NULL) { + psError(PS_ERR_UNKNOWN, true, + "path (%s) not defined in config.site:DATAPATH for PATH-style name %s", + path, newName); + psFree(newName); + psFree(path); + return false; + } + psFree(path); + + char *tmpName = NULL; + psStringAppend(&tmpName, "%s/%s", realpath, mark + 1); + psFree(newName); + newName = tmpName; + + // open the to create it if it doesn't exist. This could cause a + // strange looking error if we can't access the file. + // XXX perhaps we should try access() first? -JH + int fd = open(newName, O_RDONLY|O_CREAT); + if (fd < 0) { + psError(PS_ERR_IO, true, "unable to open() file %s", newName); + psFree(newName); + return NULL; + } + if (close(fd) < 0) { + psError(PS_ERR_IO, true, "unable to open() file %s", newName); + psFree(newName); + return NULL; + } + + return newName; + } + + // substitute neb://name with matched nebulous name + if (!strncasecmp(filename, "neb://", strlen("neb://"))) { + #ifdef HAVE_NEBCLIENT + + bool status = false; + psString nebulous_server = psMetadataLookupStr(&status, config->site, "NEBULOUS_SERVER"); + if (!status) { + psError(PM_ERR_CONFIG, true, "failed to lookup config value for NEBULOUS_SERVER."); + return NULL; + } + if (!nebulous_server) { + psError(PM_ERR_CONFIG, true, "Could not determine nebulous server URI."); + return NULL; + } + + nebServer *server = nebServerAlloc(nebulous_server); + if (!server) { + psError(PM_ERR_SYS, true, "failed to create a nebServer object: %s", nebErr(server)); + nebServerFree(server); + return NULL; + } + + // ignore the leading neb:// + char *cleanFilename = (char *)filename + strlen("neb://"); + + char *nebfile = NULL; + if (create) { + nebfile = nebCreate(server, cleanFilename, 0, NULL, NULL, NULL); + if (!nebfile) { + psError(PM_ERR_SYS, true, "failed to create a new nebulous key: %s", nebErr(server)); + nebServerFree(server); + return NULL; + } + } else { + nebfile = nebFind(server, cleanFilename); + if (!nebfile) { + psError(PM_ERR_SYS, true, "failed to find nebulous key: %s", nebErr(server)); + nebServerFree(server); + return NULL; + } + } + + // convert nebfile into a psString + psString path = psStringCopy(nebfile); + psFree(nebfile); + nebServerFree(server); + + return path; + + #else // ifdef HAVE_NEBCLIENT + + psError(PM_ERR_PROG, true, "psModules was compiled without nebulous support."); + return NULL; + #endif // ifdef HAVE_NEBCLIENT + + } + + // if we go this far, do nothing + return psStringCopy(filename); +} Index: /branches/rel-1-1/psModules/src/config/pmConfig.h =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfig.h (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfig.h (revision 12167) @@ -0,0 +1,168 @@ +/* @file pmConfig.h + * @brief Configuration functions + * + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.27 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-26 00:05:18 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONFIG_H +#define PM_CONFIG_H + +/// @addtogroup Config Configuration System +/// @{ + +/// Sources for recipes. +/// +/// Defines what recipe sources have been read. This allows us to read recipes from different sources as they +/// become available. For example, we may not have access to the camera configuration until we have read a +/// FITS file. We allow symbolic links, which means the user can specify on the command-line the name of a +/// recipe that's defined elsewhere, instead of typing the entire filename. This structure is private to +/// psModules --- there is no need for the user to know about it. +typedef enum { + PM_RECIPE_SOURCE_NONE = 0x00, ///< None yet + PM_RECIPE_SOURCE_SITE = 0x01, ///< Site configuration + PM_RECIPE_SOURCE_CAMERA = 0x02, ///< Camera configuration + PM_RECIPE_SOURCE_CL = 0x04, ///< Command-line + PM_RECIPE_SOURCE_SYMBOLIC = 0x14, ///< Symbolic link, specified on command-line + PM_RECIPE_SOURCE_ALL = 0xff ///< All sources +} pmRecipeSource; + +/// Configuration information +/// +/// This structure stores the configuration information: the site, camera and recipe configuration, the +/// command-line arguments, the pmFPAfiles used, and the database handle. +typedef struct +{ + psMetadata *site; ///< Site configuration + psMetadata *camera; ///< Camera specification + psString cameraName; ///< Camera name + psMetadata *format; ///< Camera format description + psString formatName; ///< Camera format name + psMetadata *recipes; ///< Recipes for processing + psMetadata *arguments; ///< Processed command-line arguments + psMetadata *files; ///< pmFPAfiles used for analysis + psDB *database; ///< Database handle + int *argc; ///< Number of command-line arguments + char **argv; ///< Command-line arguments (raw version) + const char *defaultRecipe; ///< name of top-level recipe for this program + // Private members + pmRecipeSource recipesRead; ///< Which recipe sources have been read + psMetadata *recipeSymbols; ///< Where each recipe came from +} +pmConfig; + +/// Allocator for pmConfig +pmConfig *pmConfigAlloc(int *argc, /// Number of command-line arguments + char **argv /// Command-line arguments + ); + +/// Set static configuration information +/// +/// The search path for the configuration files is a local static variable, set by this function. +void pmConfigSet(const char *path ///< Search paths for configuration files; colon-delimited directories + ); + +/// Free static memory used in the configuration system +void pmConfigDone(void); + +/// Read configuration information from the command line. +/// +/// pmConfigRead loads the site configuration (the file name is specified by "-site SITE_FILE" on the +/// command-line, the PS_SITE environment variable, or it is $HOME/.ipprc). The configuration search path is +/// set. The camera configuration is loaded if it is specified on the command line ("-camera +/// CAMERA_FILE"). Recipes specified on the command line ("-recipe RECIPE_NAME RECIPE_SOURCE") are also +/// loaded. These command-line arguments are removed from from the command-line, to simplify parsing. The +/// psLib log, trace and time setups are also performed if specified in the site configuration. +pmConfig *pmConfigRead(int *argc, ///< Number of command-line arguments + char **argv, ///< Array of command-line arguments + char *defaultRecipe ///< name of top-level recipe for this program + ); + +/// Read a configuration file +/// +/// Read a metadata configuration file into the supplied metadata. Produce an error and return false if +/// there's a problem. +bool pmConfigFileRead(psMetadata **config, ///< Config to output + const char *name, ///< Name of file + const char *description ///< Description of file + ); + +/// Validate a header against the camera format +/// +/// Given a FITS header (the PHU header), check it against the RULE metadata contained within the camera +/// format; return found = true if it matches. return false on serious errors +bool pmConfigValidateCameraFormat(bool *valid, + const psMetadata *cameraFormat, ///< Camera format containing the RULE + const psMetadata *header // FITS header for the PHU + ); + +/// Determine the camera format (and camera if unknown) from examining the header +/// +/// Given a FITS header, check it against all known cameras (unless we already know which camera, from +/// pmConfigRead) and all known formats for those cameras in order to identify which is appropriate. The +/// first matching format is accepted; further matches produce warnings. The accepted camera is saved in the +/// configuration. The accepted format is returned. +psMetadata *pmConfigCameraFormatFromHeader(pmConfig *config, ///< The configuration + const psMetadata *header ///< The FITS header + ); + +/// Return the camera configuration specified by name +/// +/// Given a camera name, returns the camera configuration metadata. +psMetadata *pmConfigCameraByName(pmConfig *config, ///< The configuration + const char *cameraName ///< The camera name header + ); + +/// Setup the database +/// +/// Initialise the database connection using the DBSERVER, DBNAME, DBUSER, DBPASSWORD values provided in the +/// site configuration. Stores the database handle in the configuration, and also returns it. +psDB *pmConfigDB(pmConfig *config ///< Configuration + ); + +/// Make the supplied header conform to the nominated camera format. +/// +/// Given a FITS header, make it conform to the RULE in the specified camera format. This is useful for +/// switching between formats, or generating fake data that must be recognised by +/// pmConfigCameraFormatFromHeader. +bool pmConfigConformHeader(psMetadata *header, ///< Header to conform + const psMetadata *format ///< Camera format + ); + +/// Read the command-line for files (or a text file containing a list of files) +/// +/// Given the 'file' and 'list' arguments (e.g., "-file" and "-list"), find the arguments associated with +/// these words and interpret them as lists of files. Return an array of the resulting filenames. +psArray *pmConfigFileSets(pmConfig *config, ///< Configuration, containing command-line arguments + const char *file, ///< CL argument specifying a filename + const char *list ///< CL argument specifying a text file with a list of filenames + ); + +/// Stuff associated files from the command-line into a metadata +/// +/// Calls pmConfigFileSets to parse the command line for filenames (or a list which provides filenames), and +/// stuffs the array of filenames into the metadata under "name". +bool pmConfigFileSetsMD(psMetadata *metadata, ///< Metadata into which to stuff the array + pmConfig *config, ///< Configuration (which command-line arguments) + const char *name, ///< Name for array in the metadata + const char *file, ///< CL argument specifying a filename + const char *list ///< CL argument specifying a text file with a list of filenames + ); + +/// Convert the supplied name, create a new output psString +psString pmConfigConvertFilename( + const char *filename, ///< file path/URI + const pmConfig *config, ///< configuration + bool create ///< create the file if it doesn't exist +); + +/// Set whether all config parameters are read on startup +bool pmConfigReadParamsSet(bool newReadCameraConfig // Desired mode for camera configuration reading + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/config/pmConfigCamera.c =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigCamera.c (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigCamera.c (revision 12167) @@ -0,0 +1,403 @@ +#ifdef HAVE_CONFIG_H +# include "config.h" +#endif + +#include +#include +#include + +#include "pmFPALevel.h" +#include "pmConcepts.h" + +#include "pmConfigCamera.h" + + +// Remove a concept from the list of sources. Need to check to see if it exists first, to avoid a warning. +static void removeConcept(psMetadata *source, // Source from which to remove concept + const char *concept // Concept name to remove + ) +{ + assert(source); + assert(concept && strlen(concept) > 0); + + if (psMetadataLookup(source, concept)) { + psMetadataRemoveKey(source, concept); + } + + return; +} + +// Remove certain concepts from the list of sources. These concepts are important in the mosaicking process, +// and are added explicitly to the defaults (elsewhere) so that the user can't get them wrong. +static void removeCellConceptsSources(psMetadata *source // Source for concepts + ) +{ + if (!source) { + return; + } + + removeConcept(source, "CELL.BIASSEC"); + removeConcept(source, "CELL.TRIMSEC"); + removeConcept(source, "CELL.XPARITY"); + removeConcept(source, "CELL.YPARITY"); + removeConcept(source, "CELL.X0"); + removeConcept(source, "CELL.Y0"); + + return; +} + +// Remove certain concepts from the list of sources. These concepts are important in the mosaicking process, +// and are added explicitly to the defaults (elsewhere) so that the user can't get them wrong. +static void removeChipConceptsSources(psMetadata *source // Source for concepts + ) +{ + if (!source) { + return; + } + + removeConcept(source, "CHIP.XPARITY"); + removeConcept(source, "CHIP.YPARITY"); + removeConcept(source, "CHIP.X0"); + removeConcept(source, "CHIP.Y0"); + + return; +} + +// Generate a mosaicked version of a camera configuration +static bool mosaickedVersion(psMetadata *oldCameras, // Old list of camera configurations + psMetadata *newCameras, // New list of camera configurations + const char *name, // Name of original camera configuration + pmFPALevel level // Level + ) +{ + assert(oldCameras); + assert(newCameras); + assert(name); + assert(level == PM_FPA_LEVEL_CHIP || level == PM_FPA_LEVEL_FPA); + + // See if the old one is there + psMetadata *camera = psMetadataLookupMetadata(NULL, oldCameras, name); // The camera configuration + if (!camera) { + return false; + } + + // See if the new one is already there + psString newName = NULL; // Name of mosaicked camera + psStringAppend(&newName, "_%s-%s", name, level == PM_FPA_LEVEL_CHIP ? "CHIP" : "FPA"); + if (psMetadataLookup(oldCameras, newName)) { + return true; + } + + psMetadata *new = psMetadataCopy(NULL, camera); // Copy of the camera + bool mdok; // Status of MD lookups + + // Fix up the contents of the FPA + psMetadata *fpa = psMetadataLookupMetadata(&mdok, new, "FPA"); // FPA in the camera configuration + if (!mdok || !fpa) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Can't find FPA within camera configuration."); + psFree(new); + return NULL; + } + switch (level) { + case PM_FPA_LEVEL_CHIP: { + // Replace the contents of each chip with a single cell + psMetadataIterator *fpaIter = psMetadataIteratorAlloc(fpa, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *fpaItem = NULL; // Item from iteration + while ((fpaItem = psMetadataGetAndIncrement(fpaIter))) { + if (fpaItem->type != PS_DATA_STRING) { + psWarning("Element %s within FPA in camera configuration is not of type STR.", + fpaItem->name); + continue; + } + + psFree(fpaItem->data.str); + fpaItem->data.str = psStringCopy("MosaickedCell"); + psFree(fpaItem->comment); + fpaItem->comment = psStringCopy("Mosaicked cell; automatically generated"); + } + psFree(fpaIter); + } + break; + case PM_FPA_LEVEL_FPA: { + while (psListLength(fpa->list) > 0) { + psMetadataRemoveIndex(fpa, PS_LIST_TAIL); + } + + psMetadataAddStr(fpa, PS_LIST_HEAD, "MosaickedChip", 0, + "Mosaicked chip with mosaicked cell; automatically generated", + "MosaickedCell"); + } + break; + default: + psAbort("Should never get here.\n"); + } + + // Update the camera formats appropriately + psMetadata *formats = psMetadataLookupMetadata(&mdok, new, "FORMATS"); // FORMATS in the configuration + assert(mdok && formats); // It had better be there --- we've already read them in + psMetadataIterator *formatsIter = psMetadataIteratorAlloc(formats, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *formatsItem = NULL; // Item from iteration + while ((formatsItem = psMetadataGetAndIncrement(formatsIter))) { + assert(formatsItem->type == PS_DATA_METADATA); // We should have read it by now! + psMetadata *format = formatsItem->data.V; // The camera format + + // Add a RULE + psMetadata *rule = psMetadataLookupMetadata(&mdok, format, "RULE"); // Way to identify format from PHU + if (!mdok || !rule) { + psWarning("Couldn't find RULE in the camera format %s.\n", formatsItem->name); + continue; + } + switch (level) { + case PM_FPA_LEVEL_CHIP: + psMetadataAddStr(rule, PS_LIST_TAIL, "PSMOSAIC", 0, "Mosaicked level", "CHIP"); + break; + case PM_FPA_LEVEL_FPA: + psMetadataAddStr(rule, PS_LIST_TAIL, "PSMOSAIC", 0, "Mosaicked level", "FPA"); + break; + default: + psAbort("Should never get here.\n"); + } + + // Fix the FILE information: need to fix the levels for the PHU and EXTENSIONS. + // If EXTENSIONS is NONE, then we need to change the CONTENT specifier to point to the chip name. + psMetadata *file = psMetadataLookupMetadata(&mdok, format, "FILE"); // File information + if (!mdok || !file) { + psWarning("Couldn't find FILE in the camera format %s.\n", formatsItem->name); + continue; + } + psMetadataItem *phuItem = psMetadataLookup(file, "PHU"); // PHU level + if (!phuItem || phuItem->type != PS_DATA_STRING) { + psWarning("Couldn't find PHU of type STR in the FILE information in the camera format %s.\n", + formatsItem->name); + continue; + } + if (strcasecmp(phuItem->data.str, "CELL") == 0 || + (level == PM_FPA_LEVEL_FPA && (strcasecmp(phuItem->data.str, "CHIP") == 0))) { + psFree(phuItem->data.str); + if (level == PM_FPA_LEVEL_CHIP) { + phuItem->data.str = psStringCopy("CHIP"); + } else { + phuItem->data.str = psStringCopy("FPA"); + } + } + psMetadataItem *extensionsItem = psMetadataLookup(file, "EXTENSIONS"); // Extensions level + if (!extensionsItem || extensionsItem->type != PS_DATA_STRING) { + psWarning("Couldn't find EXTENSIONS of type STR in the FILE information " + "in the camera format %s.\n", formatsItem->name); + continue; + } + switch (level) { + case PM_FPA_LEVEL_CHIP: + if (strcasecmp(extensionsItem->data.str, "NONE") == 0) { + if (strcasecmp(phuItem->data.str, "FPA") == 0) { + break; // Don't need a "CONTENT" to identify the content! + } + psMetadataItem *contentItem = psMetadataLookup(file, "CONTENT"); // Key to CONTENTS menu + if (!contentItem || contentItem->type != PS_DATA_STRING) { + psWarning("Couldn't find CONTENT of type STR in the FILE information " + "in the camera format %s.\n", formatsItem->name); + continue; + } + psFree(contentItem->data.str); + contentItem->data.str = psStringCopy("{CHIP.NAME}"); + } else if (strcasecmp(extensionsItem->data.str, "CELL") == 0) { + psFree(extensionsItem->data.str); + extensionsItem->data.str = psStringCopy("CHIP"); + } + break; + case PM_FPA_LEVEL_FPA: + psFree(extensionsItem->data.str); + extensionsItem->data.str = psStringCopy("NONE"); + break; + default: + psAbort("Should never get here.\n"); + } + + // Fix up the CONTENTS to contain only the mosaicked cell for each chip + switch (level) { + case PM_FPA_LEVEL_CHIP: + if (strcasecmp(phuItem->data.str, "FPA") == 0 && + strcasecmp(extensionsItem->data.str, "NONE") == 0) { + // List the contents on a single line + psString contentsLine = NULL; // Contents of the PHU + psMetadataIterator *fpaIter = psMetadataIteratorAlloc(fpa, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *fpaItem; // Item from iteration + while ((fpaItem = psMetadataGetAndIncrement(fpaIter))) { + if (fpaItem->type != PS_DATA_STRING) { + // We've already thrown a warning on this, above. + continue; + } + psStringAppend(&contentsLine, "%s:MosaickedCell:_mosaic ", fpaItem->name); + } + psFree(fpaIter); + psMetadataAddStr(format, PS_LIST_TAIL, "CONTENTS", PS_META_REPLACE, NULL, contentsLine); + psFree(contentsLine); + break; + } + + psMetadata *contents = psMetadataLookupMetadata(&mdok, format, "CONTENTS"); // Contents of file + if (!mdok || !contents) { + psWarning("Couldn't find CONTENTS in the camera format %s.\n", formatsItem->name); + continue; + } + while (psListLength(contents->list) > 0) { + psMetadataRemoveIndex(contents, PS_LIST_TAIL); + } + psMetadataIterator *fpaIter = psMetadataIteratorAlloc(fpa, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *fpaItem; // Item from iteration + while ((fpaItem = psMetadataGetAndIncrement(fpaIter))) { + if (fpaItem->type != PS_DATA_STRING) { + // We've already thrown a warning on this, above. + continue; + } + + psString content = NULL; // Content of the chip + psStringAppend(&content, "%s:MosaickedCell:_mosaic", fpaItem->name); + psMetadataAddStr(contents, PS_LIST_TAIL, fpaItem->name, 0, NULL, content); + psFree(content); // Drop reference + } + psFree(fpaIter); + break; + case PM_FPA_LEVEL_FPA: + psMetadataAddStr(format, PS_LIST_TAIL, "CONTENTS", PS_META_REPLACE, NULL, + "MosaickedChip:MosaickedCell:_mosaic"); + break; + default: + psAbort("Should never get here.\n"); + } + + // Fix the cell type + psMetadata *cells = psMetadataLookupMetadata(&mdok, format, "CELLS"); // CELLS information + if (!mdok || !cells) { + psWarning("Couldn't find CELLS of type METADATA in the camera format %s.\n", formatsItem->name); + continue; + } + psMetadata *cell = psMetadataAlloc(); // Cell information + psMetadataAddStr(cell, PS_LIST_TAIL, "CELL.TRIMSEC", 0, "Trim section", "TRIMSEC"); + psMetadataAddStr(cell, PS_LIST_TAIL, "CELL.BIASSEC", 0, "Bias section", "BIASSEC"); + psMetadataAddStr(cell, PS_LIST_TAIL, "CELL.TRIMSEC.SOURCE", 0, "Trim section source", "HEADER"); + psMetadataAddStr(cell, PS_LIST_TAIL, "CELL.BIASSEC.SOURCE", 0, "Bias section source", "HEADER"); + psMetadataAddMetadata(cells, PS_LIST_HEAD, "_mosaic", PS_META_REPLACE, + "Mosaic cell information", cell); + psFree(cell); // Drop reference + + // Update the concepts, so that they are all stored in the FITS headers, under headers of the same + // name as the concept + psMetadata *database = psMetadataLookupMetadata(&mdok, format, "DATABASE"); // DATABASE concepts + psMetadata *defaults = psMetadataLookupMetadata(&mdok, format, "DEFAULTS"); // DEFAULTS concepts + if (!mdok || !defaults) { + psWarning("Couldn't find DEFAULTS of type METADATA in the camera format %s.\n", + formatsItem->name); + continue; + } + psMetadata *translation = psMetadataLookupMetadata(&mdok, format, "TRANSLATION"); // TRANSLATION info + if (!mdok || !translation) { + psWarning("Couldn't find TRANSLATION of type METADATA in the camera format %s.\n", + formatsItem->name); + continue; + } + + removeCellConceptsSources(translation); + removeCellConceptsSources(database); + removeCellConceptsSources(defaults); + + // Add in the positioning concepts + psMetadataAddS32(defaults, PS_LIST_TAIL, "CELL.XPARITY", 0, NULL, 1); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CELL.YPARITY", 0, NULL, 1); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CELL.X0", 0, NULL, 0); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CELL.Y0", 0, NULL, 0); + if (formats) { + if (psMetadataLookup(formats, "CELL.X0")) { + psMetadataRemoveKey(formats, "CELL.X0"); + } + if (psMetadataLookup(formats, "CELL.Y0")) { + psMetadataRemoveKey(formats, "CELL.Y0"); + } + } + + if (level == PM_FPA_LEVEL_FPA) { + removeChipConceptsSources(translation); + removeChipConceptsSources(database); + removeChipConceptsSources(defaults); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CHIP.XPARITY", 0, NULL, 1); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CHIP.YPARITY", 0, NULL, 1); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CHIP.X0", 0, NULL, 0); + psMetadataAddS32(defaults, PS_LIST_TAIL, "CHIP.Y0", 0, NULL, 0); + if (formats) { + if (psMetadataLookup(formats, "CHIP.X0")) { + psMetadataRemoveKey(formats, "CHIP.X0"); + } + if (psMetadataLookup(formats, "CHIP.Y0")) { + psMetadataRemoveKey(formats, "CHIP.Y0"); + } + } + } + + } + psFree(formatsIter); + + // New camera MUST go to the head of the metadata, so that it will be recognised first + // The old camera doesn't contain the PSMOSAIC header, so it will match anything! + psMetadataAddMetadata(newCameras, PS_LIST_HEAD, newName, PS_META_REPLACE, + "Automatically generated", new); + psFree(newName); + psFree(new); + + return true; +} + + +// Generate the chip mosaicked version of a camera configuration +bool pmConfigCameraMosaickedVersions(psMetadata *site, // The site configuration + const char *name // Name of the un-mosaicked camera + ) +{ + PS_ASSERT_METADATA_NON_NULL(site, false); + PS_ASSERT_STRING_NON_EMPTY(name, false); + + bool mdok; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, site, "CAMERAS"); // List of cameras + if (!mdok || !cameras) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find CAMERAS in the site configuration.\n"); + return false; + } + return mosaickedVersion(cameras, cameras, name, PM_FPA_LEVEL_CHIP) && + mosaickedVersion(cameras, cameras, name, PM_FPA_LEVEL_FPA); +} + + +bool pmConfigCameraMosaickedVersionsAll(psMetadata *site) +{ + PS_ASSERT_METADATA_NON_NULL(site, false); + + bool mdok; // Status of MD lookup + psMetadata *cameras = psMetadataLookupMetadata(&mdok, site, "CAMERAS"); // List of cameras + if (!mdok || !cameras) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find CAMERAS in the site configuration.\n"); + return false; + } + + psMetadataIterator *camerasIter = psMetadataIteratorAlloc(cameras, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *camerasItem = NULL; // Item from iteration + psMetadata *new = psMetadataAlloc();// New cameras to add + while ((camerasItem = psMetadataGetAndIncrement(camerasIter))) { + assert(camerasItem->type == PS_DATA_METADATA); // Only metadata are allowed here! + mosaickedVersion(cameras, new, camerasItem->name, PM_FPA_LEVEL_CHIP); + mosaickedVersion(cameras, new, camerasItem->name, PM_FPA_LEVEL_FPA); + } + psFree(camerasIter); + + // Now put the new cameras at the top of the list of cameras, so they get recognised first + // Note: going from the top, and putting everything to the top as we get there, so that the last one on + // goes to the top. This preserves the original order of the cameras, putting the mosaicked versions + // before the originals. + camerasIter = psMetadataIteratorAlloc(new, PS_LIST_HEAD, NULL); // Iterator + while ((camerasItem = psMetadataGetAndIncrement(camerasIter))) { + psMetadataAddItem(cameras, camerasItem, PS_LIST_HEAD, 0); + } + psFree(camerasIter); + psFree(new); + + return true; +} + Index: /branches/rel-1-1/psModules/src/config/pmConfigCamera.h =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigCamera.h (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigCamera.h (revision 12167) @@ -0,0 +1,30 @@ +/* @file pmConfigCamera.h + * @brief Camera Configuration functions + * + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 01:05:41 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONFIG_CAMERA_H +#define PM_CONFIG_CAMERA_H + +/// @addtogroup Config Configuration System +/// @{ + +#include + +/// Generate the chip mosaicked version of a particular camera configuration +bool pmConfigCameraMosaickedVersions(psMetadata *site, // Site configuration + const char *name // Name of the un-mosaicked camera + ); + +/// Generate chip- and fpa-mosaicked versions of all the camera configurations +bool pmConfigCameraMosaickedVersionsAll(psMetadata *site // Site configuration + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/config/pmConfigCommand.c =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigCommand.c (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigCommand.c (revision 12167) @@ -0,0 +1,59 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmConfigCommand.h" + +bool pmConfigDatabaseCommand(psString *command, const pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(command, false); + + bool mdok; // Status of MD lookup + const char *dbserver = psMetadataLookupStr(&mdok, config->site, "DBSERVER"); // Database server + if (!mdok || strlen(dbserver) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find DBSERVER in site configuration.\n"); + return NULL; + } + const char *dbname = psMetadataLookupStr(&mdok, config->site, "DBNAME"); // Database name + if (!mdok || strlen(dbname) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find DBNAME in site configuration.\n"); + return NULL; + } + const char *dbuser = psMetadataLookupStr(&mdok, config->site, "DBUSER"); // Database user + if (!mdok || strlen(dbuser) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find DBUSER in site configuration.\n"); + return NULL; + } + const char *dbpassword = psMetadataLookupStr(&mdok, config->site, "DBPASSWORD"); // Database password + if (!mdok || strlen(dbpassword) == 0) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find DBPASSWORD in site configuration.\n"); + return NULL; + } + + psStringAppend(command, " -dbserver %s -dbname %s -dbuser %s -dbpassword %s", + dbserver, dbname, dbuser, dbpassword); + + return true; +} + + +bool pmConfigTraceCommand(psString *command) +{ + PS_ASSERT_PTR_NON_NULL(command, false); + + psMetadata *levels = psTraceLevels(); // Metadata levels + psMetadataIterator *iter = psMetadataIteratorAlloc(levels, PS_LIST_HEAD, NULL); // Iterator for levels + psMetadataItem *item; // Item from iteration + while ((item = psMetadataGetAndIncrement(iter))) { + assert(item->type == PS_TYPE_S32); + psStringAppend(command, " -trace %s %d", item->name, item->data.S32); + } + psFree(iter); + psFree(levels); + + return true; +} Index: /branches/rel-1-1/psModules/src/config/pmConfigCommand.h =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigCommand.h (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigCommand.h (revision 12167) @@ -0,0 +1,21 @@ +#ifndef PM_CONFIG_COMMAND_H +#define PM_CONFIG_COMMAND_H + +#include +#include "pmConfig.h" + +/// Extend a command-line to include the necessary database flags +/// +/// The command-line is extended with -dbserver, -dbname, -dbuser, -dbpassword +bool pmConfigDatabaseCommand(psString *command, ///< Command to extend + const pmConfig *config ///< Configuration + ); + +/// Extend a command-line to propagate the trace flags +/// +/// The command-line is extended with -trace +bool pmConfigTraceCommand(psString *command ///< Command to extend + ); + + +#endif Index: /branches/rel-1-1/psModules/src/config/pmConfigRecipes.c =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigRecipes.c (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigRecipes.c (revision 12167) @@ -0,0 +1,494 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include "pmConfig.h" +#include "pmConfigRecipes.h" + +static bool loadRecipeFiles(pmConfig *config, psMetadata *source, pmRecipeSource type, const char *name); +static bool loadRecipeFromArguments(pmConfig *config); +static bool loadRecipeSymbols(pmConfig *config); +static bool loadRecipeOptions(pmConfig *config); + +// use this function to select the options structure for the specified recipe +// add additional command-line options to this metadata (before parsing the camera) +psMetadata *pmConfigRecipeOptions (pmConfig *config, char *recipeName) +{ + + // if the recipe is already defined in config->arguments, supplement + // save the recipe options onto config->arguments:RECIPES + psMetadata *options; + psMetadataItem *optionsItem = psMetadataLookup(config->arguments, "OPTIONS"); + if (optionsItem) { + assert(optionsItem->type == PS_DATA_METADATA); + options = psMemIncrRefCounter(optionsItem->data.V); + } else { + options = psMetadataAlloc (); + psMetadataAddPtr (config->arguments, PS_LIST_TAIL, "OPTIONS", PS_DATA_METADATA, "", options); + } + + // look for the recipe defined in recipes + psMetadata *recipe; + psMetadataItem *recipeItem = psMetadataLookup(options, recipeName); + psFree(options); // Drop reference + if (recipeItem) { + assert(recipeItem->type == PS_DATA_METADATA); + recipe = psMemIncrRefCounter(recipeItem->data.V); + } else { + recipe = psMetadataAlloc(); + psMetadataAddPtr(options, PS_LIST_TAIL, recipeName, PS_DATA_METADATA, "", recipe); + } + + return recipe; +} + +// this function may be called several times. it attempts to load the recipe data from one of +// three locations: config->site, config->camera, and config->argv we cannot read the recipes +// from config->camera until a camera has been read BUT, the argv recipes must override the +// camera and site recipes. +bool pmConfigReadRecipes(pmConfig *config, pmRecipeSource source) +{ + PS_ASSERT_PTR_NON_NULL(config, false); + + if (!config->recipes) { + config->recipes = psMetadataAlloc(); + } + + // Read the recipe file names from the site configuration and camera configuration + // XXX EAM : I think it should be an error for config->site:recipes not to exist + // for now, keep this as a warning + if (config->site && (source & PM_RECIPE_SOURCE_SITE)) { + if (!loadRecipeFiles(config, config->site, PM_RECIPE_SOURCE_SITE, "site configuration")) { + psLogMsg ("psModules.config", PS_LOG_WARN, "Failed to read recipes from site config"); + } else { + psTrace ("psModules.config", 3, "read recipes from site config"); + } + } + + // camera-specific recipes are not required : note the absence with a message + // camera-specific recipes may be read for a specified camera (in pmConfigRead) or + // for an identified camera (in pmConfigCameraFormatFromHeader). the second + // set should not override the first set + if (config->camera && (source & PM_RECIPE_SOURCE_CAMERA) && !(config->recipesRead & PM_RECIPE_SOURCE_CAMERA)) { + if (!loadRecipeFiles(config, config->camera, PM_RECIPE_SOURCE_CAMERA, "camera configuration")) { + psLogMsg ("psModules.config", PS_LOG_DETAIL, "no recipe supplied by camera config"); + } else { + psTrace ("psModules.config", 3, "read recipes from camera config"); + } + } + + // apply recipes loaded into config->arguments based on command-line arguments + if (config->arguments && (source & PM_RECIPE_SOURCE_CL)) { + if (!loadRecipeFromArguments(config)) { + psLogMsg ("psModules.config", PS_LOG_DETAIL, "no recipe supplied on command-line arguments"); + } else { + psTrace ("psModules.config", 3, "read recipes from command-line arguments"); + } + if (!loadRecipeSymbols(config)) { + psLogMsg ("psModules.config", PS_LOG_DETAIL, "no recipe supplied on command-line arguments"); + } else { + psTrace ("psModules.config", 3, "read recipes from command-line arguments"); + } + if (!loadRecipeOptions(config)) { + psLogMsg ("psModules.config", PS_LOG_DETAIL, "no recipe supplied on command-line arguments"); + } else { + psTrace ("psModules.config", 3, "read recipes from command-line arguments"); + } + } + /* + * We may have seen real errors, but we also get false status returned by valid conditions (e.g. asking a + * file for a recipe when none was provided). For now we'll never signal an error, but this should + * be reconsidered ASAP. + */ + psErrorClear(); + return true; +} + +// search for options of the form -D KEY VALUE or -D RECIPE:KEY VALUE +bool pmConfigLoadRecipeOptions (pmConfig *config, char *flag) +{ + + int argNum; + + // save the recipes onto config->arguments:RECIPES + // increment so we can free below (is a NOP is options is NULL) + psMetadata *options; // OPTIONS on the arguments + psMetadataItem *optionsItem = psMetadataLookup(config->arguments, "OPTIONS"); + if (optionsItem) { + if (optionsItem->type != PS_DATA_METADATA) { + psAbort("OPTIONS is not of type METADATA."); + } + options = psMemIncrRefCounter(optionsItem->data.V); + } else { + options = psMetadataAlloc(); + psMetadataAddPtr(config->arguments, PS_LIST_TAIL, "OPTIONS", PS_DATA_METADATA, + "Command-line options specified with -D", options); + } + + // -D key value (all added as string) + while ((argNum = psArgumentGet (*config->argc, config->argv, flag))) { + psArgumentRemove (argNum, config->argc, config->argv); + + // do we have enough arguments? + if (argNum + 1 >= *config->argc) { + psError(PS_ERR_IO, true, "insufficient parameters for command-line argument -D"); + return false; + } + + // is a target recipe specified? + const char *recipeName = NULL; + char *key; + psArray *words = psStringSplitArray(config->argv[argNum], ":", false); + switch (words->n) { + case 1: + recipeName = config->defaultRecipe; + if (!config->defaultRecipe) { + psError(PS_ERR_IO, true, "syntax error in parameter: no default recipe available; must specify recipe"); + return false; + } + key = words->data[0]; + break; + case 2: + recipeName = words->data[0]; + key = words->data[1]; + break; + default: + psError(PS_ERR_IO, true, "syntax error in parameter"); + return false; + } + + // if this recipe is already defined in options, supplement + psMetadata *recipe; + psMetadataItem *recipeItem = psMetadataLookup(options, recipeName); + if (recipeItem) { + assert(recipeItem->type == PS_DATA_METADATA); + recipe = psMemIncrRefCounter(recipeItem->data.V); + } else { + recipe = psMetadataAlloc(); + psMetadataAddPtr(options, PS_LIST_TAIL, recipeName, PS_DATA_METADATA, "", recipe); + } + + bool valid = false; + if (!strcmp (flag, "-D")) { + psMetadataAddStr (recipe, PS_LIST_TAIL, key, PS_META_REPLACE, "", config->argv[argNum+1]); + valid = true; + } + if (!strcmp (flag, "-Di")) { + psMetadataAddS32 (recipe, PS_LIST_TAIL, key, PS_META_REPLACE, "", atoi(config->argv[argNum+1])); + valid = true; + } + if (!strcmp (flag, "-Df")) { + psMetadataAddF32 (recipe, PS_LIST_TAIL, key, PS_META_REPLACE, "", atof(config->argv[argNum+1])); + valid = true; + } + if (!strcmp (flag, "-Db")) { + if (!strcasecmp (config->argv[argNum+1], "true")) { + psMetadataAddBool (recipe, PS_LIST_TAIL, key, PS_META_REPLACE, "", true); + } else { + psMetadataAddBool (recipe, PS_LIST_TAIL, key, PS_META_REPLACE, "", false); + } + valid = true; + } + psFree (words); + psFree (recipe); + assert (valid); // flag may be: -D, -Df, -Di, -Db + + psArgumentRemove (argNum, config->argc, config->argv); + psArgumentRemove (argNum, config->argc, config->argv); + } + psFree (options); + return true; +} + +// examine command-line arguments for -recipe KEY VALUE +// if VALUE is an existing file, read as metadata and save on config->arguments with name = KEY +// if VALUE is not an exiting file, it is a symbolic lookup: it is saved on config->recipeSymbols +// for later interpolation (pmConfigReadRecipes with option CL) +bool pmConfigLoadRecipeArguments (pmConfig *config) +{ + psMetadata *recipes; // Recipes in the arguments list + psMetadataItem *recipesItem = psMetadataLookup(config->arguments, "RECIPES"); + if (recipesItem) { + if (recipesItem->type != PS_DATA_METADATA) { + psAbort("RECIPES is not of type METADATA."); + } + recipes = psMemIncrRefCounter(recipesItem->data.V); + } else { + recipes = psMetadataAlloc(); + psMetadataAddPtr (config->arguments, PS_LIST_TAIL, "RECIPES", PS_DATA_METADATA, "", recipes); + } + + + // Go through the command-line arguments + int argNum; // Argument number for "-recipe" + while ((argNum = psArgumentGet(*config->argc, config->argv, "-recipe")) > 0) { + psArgumentRemove(argNum, config->argc, config->argv); + if (argNum + 1 >= *config->argc) { + psError(PS_ERR_IO, false, "-recipe command-line switch provided without the required recipe and source\n"); + return false; + } + + const char *recipeName = psStringCopy(config->argv[argNum]); // Name of the recipe + psArgumentRemove(argNum, config->argc, config->argv); + const char *recipeSource = psStringCopy(config->argv[argNum]); // Source of the recipe + psArgumentRemove(argNum, config->argc, config->argv); + + if (access(recipeSource, R_OK) == 0) { + // The source is a file: load onto config->arguments + // save the recipes onto config->arguments:RECIPES + + psMetadata *recipe = NULL; // Recipe from file + if (pmConfigFileRead(&recipe, recipeSource, "recipe")) { + psString comment = psStringCopy("Recipe added at command line from "); + psStringAppend(&comment, "%s", recipeSource); + psMetadataAdd(recipes, PS_LIST_TAIL, recipeName, PS_DATA_METADATA | PS_META_REPLACE, + comment, recipe); + psFree(comment); + psFree(recipe); // Drop reference + } else { + psAbort("error reading config file %s\n", recipeSource); + } + } else { + // Assume it's a symbolic reference to something that's not yet read in. + // it will be loaded later by pmConfigReadRecipes with option CL + psMetadataAddStr(config->recipeSymbols, PS_LIST_TAIL, recipeName, PS_META_REPLACE, "", + recipeSource); + } + psTrace ("psModules.config", 3, "read recipe %s from %s", recipeName, recipeSource); + psFree((void *)recipeName); + psFree((void *)recipeSource); + } // Iterating through the command-line arguments + + psFree(recipes); // Drop reference + return true; +} + +// Load the recipe files (valid for SITE | CAMERA) +// each time we load a specific recipe, it overrides the existing metadata for that recipe +// for sourceType == SITE | CAMERA, RECIPES contains a list of files to be read (pmConfigFileRead) +static bool loadRecipeFiles(pmConfig *config, // The configuration into which to read the recipes + psMetadata *source, // The source configuration, from which to read the filenames + pmRecipeSource sourceType, // The source type + const char *sourceName // The name of the source, for error messages + ) +{ + assert(config); + if ((sourceType != PM_RECIPE_SOURCE_SITE) && (sourceType != PM_RECIPE_SOURCE_CAMERA)) { + psAbort("invalid source for loadRecipes"); + } + if (!source) { + psTrace("psModules.config", 4, "The %s has not been read --- cannot read recipes from this " + "location.\n", sourceName); + config->recipesRead &= ~sourceType; + return false; + } + + psMetadata *recipes = psMetadataLookupMetadata(NULL, source, "RECIPES"); // The list of recipes + if (!recipes) { + psLogMsg("psModules.config", PS_LOG_WARN, "RECIPES not found in the %s\n", sourceName); + config->recipesRead &= ~sourceType; + return false; + } + + // Copy contents of the filenames to config->recipes from the "RECIPES" metadata in the source. + // We could use psMetadataCopy for this, but it's better to check that everything's of the correct type. + // If it's not of the correct type, we can tell the user which file it's in, so they can find it easier. + psMetadataIterator *recipesIter = psMetadataIteratorAlloc(recipes, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *fileItem = NULL; // MD item containing the filename, from recipe iteration + while ((fileItem = psMetadataGetAndIncrement(recipesIter))) { + // type mismatch is a serious error + if (fileItem->type != PS_DATA_STRING) { + psAbort("%s in %s RECIPES is not of type STR", fileItem->name, sourceName); + } + + // Read the recipe file. if we fail on a file, give a warning, but continue + psMetadata *recipe = NULL; + if (!pmConfigFileRead(&recipe, fileItem->data.V, "recipe")) { + psWarning("Failed to read recipe file %s listed in %s\n", (char *)fileItem->data.V, sourceName); + continue; + } + + // if this named recipe exists, supplement it + psMetadata *current = NULL; // Current, extant recipe of the same name, to be supplemented + psMetadataItem *currentItem = psMetadataLookup(config->recipes, fileItem->name); + if (currentItem) { + if (currentItem->type != PS_DATA_METADATA) { + psAbort("Item from recipes is not of type METADATA."); + } + current = psMemIncrRefCounter(currentItem->data.V); + psTrace("psModules.config", 3, "Supplementing %s from %s within %s.\n", currentItem->name, + fileItem->name, sourceName); + } + current = psMetadataCopy(current, recipe); + psFree(recipe); // Drop reference + psMetadataAdd(config->recipes, PS_LIST_TAIL, fileItem->name, PS_DATA_METADATA | PS_META_REPLACE, + fileItem->comment, current); + psFree(current); // Drop reference + } + psFree(recipesIter); + config->recipesRead |= sourceType; + return true; +} + +// Load the recipes from config->arguments (CL) +// Load the recipes: each time we load a specific recipe, it overrides the metadata +// entries for an existing recipe metadata +static bool loadRecipeFromArguments(pmConfig *config // The configuration into which to read the recipes + ) +{ + assert(config); + if (!config->arguments) { + psTrace("psModules.config", 4, "no config->arguments metadata, nothing to read here"); + return false; + } + + psMetadata *recipes = psMetadataLookupMetadata(NULL, config->arguments, "RECIPES"); // The list of recipes + if (!recipes) { + psTrace("psModules.config", 4, "no RECIPES in config->arguments, nothing to read here"); + return false; + } + + // Copy the recipes from config->arguments:RECIPES to config->recipes. supplement existing recipes. + psMetadataIterator *recipesIter = psMetadataIteratorAlloc(recipes, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item = NULL; // MD item containing the filename, from recipe iteration + while ((item = psMetadataGetAndIncrement(recipesIter))) { + // type mismatch is a serious error + if (item->type != PS_DATA_METADATA) { + psAbort("%s in config arguments RECIPES is not of type METADATA", item->name); + } + // increment the ref counter to protect the data + + psMetadata *recipe = item->data.V; // Recipe of interest + + // if this named recipe exists, supplement it + psMetadata *current = NULL; + psMetadataItem *currentItem = psMetadataLookup(config->recipes, item->name); + if (currentItem) { + assert(currentItem->type == PS_DATA_METADATA); + current = psMemIncrRefCounter(currentItem->data.V); + } + current = psMetadataCopy (current, recipe); + psMetadataAdd(config->recipes, PS_LIST_TAIL, item->name, PS_DATA_METADATA | PS_META_REPLACE, + "added from command-line recipe", current); + psFree(current); // Drop reference + } + psFree(recipesIter); + return true; +} + +// Load the recipes: each time we load a specific recipe, it overrides the metadata +// entries for an existing recipe metadata +static bool loadRecipeSymbols(pmConfig *config // The configuration into which to read the recipes + ) +{ + assert(config); + + // check to see if any symbolic names need to be resolved + // each entry in recipeSymbols are of the form NAME=REF where NAME is an existing + // recipe MD and REF is a MD to load over that recipe + psMetadataIterator *recipesIter = psMetadataIteratorAlloc(config->recipeSymbols, PS_LIST_HEAD, NULL); + psMetadataItem *item = NULL; // Item containing source, from iteration + while ((item = psMetadataGetAndIncrement(recipesIter))) { + assert(item->type == PS_DATA_STRING); // It should be this type: we put it in ourselves + const char *symbolRef = item->data.V; // The name of the symbolic reference + const char *symbolName = item->name; + + // search for linkName in config->recipes + psMetadataItem *recipeItem = psMetadataLookup(config->recipes, symbolRef); + if (recipeItem) { + // if this named recipe exists, supplement it + assert(recipeItem->type == PS_DATA_METADATA); + psMetadata *recipe = recipeItem->data.V; + psTrace("psModules.config", 3, "Supplementing %s from %s.\n", symbolName, symbolRef); + + psMetadata *current = NULL; + psMetadataItem *currentItem = psMetadataLookup(config->recipes, symbolName); + if (currentItem) { + assert(currentItem->type == PS_DATA_METADATA); + current = psMemIncrRefCounter(currentItem->data.V); + } + + current = psMetadataCopy(current, recipe); + psMetadataAdd(config->recipes, PS_LIST_TAIL, symbolName, PS_DATA_METADATA | PS_META_REPLACE, + symbolRef, current); + psFree(current); // Drop reference + continue; + } + + // search for linkName in config->recipes:NAME + psMetadata *current = psMetadataLookupMetadata(NULL, config->recipes, symbolName); // The source + if (current) { + psMetadataItem *recipeItem = psMetadataLookup(current, symbolRef); + if (recipeItem) { + assert(recipeItem->type == PS_DATA_METADATA); + psMetadata *recipe = recipeItem->data.V; + psTrace("psModules.config", 3, "Supplementing %s from %s metadata within %s.\n", + symbolName, symbolRef, symbolRef); + psMetadataCopy (current, recipe); + psMetadataAdd(config->recipes, PS_LIST_TAIL, symbolName, PS_DATA_METADATA | PS_META_REPLACE, + symbolRef, current); + continue; + } + } + // symbol is not found: ERROR + } + psFree(recipesIter); + return true; +} + +// Load the recipe options +// Load the recipes: each time we load a specific recipe, it overrides the metadata +// entries for an existing recipe metadata +static bool loadRecipeOptions(pmConfig *config // The configuration into which to read the recipes + ) +{ + assert(config); + if (!config->arguments) { + psTrace("psModules.config", 4, "no config->arguments metadata, nothing to read here"); + return false; + } + + psMetadata *recipes = psMetadataLookupMetadata(NULL, config->arguments, "OPTIONS"); // The list of recipes + if (!recipes) { + psTrace("psModules.config", 4, "no OPTIONS in config->arguments, nothing to read here"); + return false; + } + + // Copy the recipes from config->arguments:OPTIONS to config->recipes. supplement existing recipes. + psMetadataIterator *recipesIter = psMetadataIteratorAlloc(recipes, PS_LIST_HEAD, NULL); // Iterator + psMetadataItem *item = NULL; // MD item containing the filename, from recipe iteration + while ((item = psMetadataGetAndIncrement(recipesIter))) { + // type mismatch is a serious error + if (item->type != PS_DATA_METADATA) { + psAbort("%s in config arguments OPTIONS is not of type METADATA", item->name); + } + // increment the ref counter to protect the data + psMetadata *recipe = psMemIncrRefCounter (item->data.V); + + // if this named recipe exists, supplement it + psMetadata *current = NULL; + psMetadataItem *currentItem = psMetadataLookup(config->recipes, item->name); + if (currentItem) { + assert(currentItem->type == PS_DATA_METADATA); + current = psMemIncrRefCounter(currentItem->data.V); + } + current = psMetadataCopy (current, recipe); + psMetadataAdd(config->recipes, PS_LIST_TAIL, item->name, PS_DATA_METADATA | PS_META_REPLACE, + "supplement command-line arguments", current); + psFree(recipe); // Drop reference + psFree(current); // Drop reference + } + psFree(recipesIter); + return true; +} + + Index: /branches/rel-1-1/psModules/src/config/pmConfigRecipes.h =================================================================== --- /branches/rel-1-1/psModules/src/config/pmConfigRecipes.h (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmConfigRecipes.h (revision 12167) @@ -0,0 +1,33 @@ +/* @file pmConfigRecipes.h + * @brief Configuration Recipe functions + * + * @author ?, MHPCC + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 01:05:41 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_CONFIG_RECIPES_H +#define PM_CONFIG_RECIPES_H + +/// @addtogroup Config Configuration System +/// @{ + +/// Read recipes +/// +/// Attempt to read recipes from the sources that are available but have not already been read. Having read a +/// recipe, attempt to resolve symbolic links that were specified on the command line. +bool pmConfigReadRecipes(pmConfig *config, ///< Configuration + pmRecipeSource source ///< desired sources for recipes + ); + + +bool pmConfigLoadRecipeArguments (pmConfig *config); +bool pmConfigLoadRecipeOptions (pmConfig *config, char *flag); +psMetadata *pmConfigRecipeOptions (pmConfig *config, char *recipe); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/config/pmErrorCodes.c.in =================================================================== --- /branches/rel-1-1/psModules/src/config/pmErrorCodes.c.in (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmErrorCodes.c.in (revision 12167) @@ -0,0 +1,25 @@ +/* + * The line + { PM_ERR_$X{ErrorCode}, "$X{ErrorDescription}"}, + * (without the Xs) + * will be replaced by values from errorCodes.dat + */ +#include "pslib.h" +#include "pmErrorCodes.h" + +void pmErrorRegister(void) +{ + static psErrorDescription errors[] = { + { PM_ERR_BASE, "First value we use; lower values belong to psLib" }, + { PM_ERR_${ErrorCode}, "${ErrorDescription}"}, + }; + static int nerror = PM_ERR_NERROR - PM_ERR_BASE; // number of values in enum + + for (int i = 0; i < nerror; i++) { + psErrorDescription *tmp = psAlloc(sizeof(psErrorDescription)); + *tmp = errors[i]; + psErrorRegister(tmp, 1); + psFree(tmp); /* it's on the internal list */ + } + nerror = 0; // don't register more than once +} Index: /branches/rel-1-1/psModules/src/config/pmErrorCodes.dat =================================================================== --- /branches/rel-1-1/psModules/src/config/pmErrorCodes.dat (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmErrorCodes.dat (revision 12167) @@ -0,0 +1,17 @@ +# +# This file is used to generate psphotErrorClasses.h +# +UNKNOWN Unknown PM error code +PHOTOM Problem in photometry +ASTROM Problem in astrometry +CAMERA Problem in camera +CONCEPTS Problem in concepts +IMCOMBINE Problem in imcombine +OBJECTS Problem in objects +SKY Problem in sky +# these errors correspond to standard exit conditions +ARGUMENTS Incorrect arguments +SYS System error +CONFIG Problem in configure files +PROG Programming error +DATA invalid data Index: /branches/rel-1-1/psModules/src/config/pmErrorCodes.h.in =================================================================== --- /branches/rel-1-1/psModules/src/config/pmErrorCodes.h.in (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmErrorCodes.h.in (revision 12167) @@ -0,0 +1,18 @@ +#if !defined(PM_ERROR_CODES_H) +#define PM_ERROR_CODES_H +/* + * The line + * PM_ERR_$X{ErrorCode}, + * (without the X) + * + * will be replaced by values from errorCodes.dat + */ +typedef enum { + PM_ERR_BASE = 1200, + PM_ERR_${ErrorCode}, + PM_ERR_NERROR +} pmErrorCode; + +void pmErrorRegister(void); + +#endif Index: /branches/rel-1-1/psModules/src/config/pmVersion.c =================================================================== --- /branches/rel-1-1/psModules/src/config/pmVersion.c (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmVersion.c (revision 12167) @@ -0,0 +1,28 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmVersion.h" + +static const char *cvsTag = "$Name: not supported by cvs2svn $";// CVS tag name + +psString psModulesVersion(void) +{ + psString version = NULL; // Version, to return + psStringAppend(&version, "%s-%s",PACKAGE_NAME,PACKAGE_VERSION); + return version; +} + +psString psModulesVersionLong(void) +{ + psString version = psModulesVersion(); // Version, to return + psString tag = psStringStripCVS(cvsTag, "Name"); // CVS tag + + psStringAppend(&version, " (cvs tag %s) %s, %s", tag, __DATE__, __TIME__); + + psFree(tag); + return version; +} Index: /branches/rel-1-1/psModules/src/config/pmVersion.h =================================================================== --- /branches/rel-1-1/psModules/src/config/pmVersion.h (revision 12167) +++ /branches/rel-1-1/psModules/src/config/pmVersion.h (revision 12167) @@ -0,0 +1,40 @@ +/* @file pmVersion.h + * @brief Version functions + * + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 01:05:41 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_VERSION_H +#define PM_VERSION_H + +/// @addtogroup Config Configuration System +/// @{ + +#include + +/** Get current psModules version + * + * Returns the current psModules version name as a string. + * + * @return psString: String with version name. + */ +psString psModulesVersion( + void +); + +/** Get current psModules version (full identification) + * + * Returns the current psModules version name and other information identifying the compilation. + * + * @return psString: String with identity. + */ +psString psModulesVersionLong(void); + + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/detrend/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo Index: /branches/rel-1-1/psModules/src/detrend/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/detrend/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/Makefile.am (revision 12167) @@ -0,0 +1,31 @@ +noinst_LTLIBRARIES = libpsmodulesdetrend.la + +libpsmodulesdetrend_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) +libpsmodulesdetrend_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulesdetrend_la_SOURCES = \ + pmFlatField.c \ + pmFlatNormalize.c \ + pmFringeStats.c \ + pmMaskBadPixels.c \ + pmNonLinear.c \ + pmBias.c \ + pmDetrendDB.c \ + pmShutterCorrection.c \ + pmShifts.c + +# pmSkySubtract.c + +pkginclude_HEADERS = \ + pmFlatField.h \ + pmFlatNormalize.h \ + pmFringeStats.h \ + pmMaskBadPixels.h \ + pmNonLinear.h \ + pmBias.h \ + pmDetrendDB.h \ + pmShutterCorrection.h \ + pmShifts.h + +# pmSkySubtract.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/detrend/pmBias.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmBias.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmBias.c (revision 12167) @@ -0,0 +1,455 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDUUtils.h" +#include "pmBias.h" + +static void overscanOptionsFree(pmOverscanOptions *options) +{ + psFree(options->stat); + psFree(options->poly); + psFree(options->spline); +} + +pmOverscanOptions *pmOverscanOptionsAlloc(bool single, pmFit fitType, unsigned int order, psStats *stat) +{ + pmOverscanOptions *opts = psAlloc(sizeof(pmOverscanOptions)); + psMemSetDeallocator(opts, (psFreeFunc)overscanOptionsFree); + + // Inputs + opts->single = single; + opts->fitType = fitType; + opts->order = order; + opts->stat = psMemIncrRefCounter(stat); + + // Outputs + opts->poly = NULL; + opts->spline = NULL; + + return opts; +} + + +// subtractFrame(): this routine will take as input a readout for the input image and a readout for the bias +// image. The bias image is subtracted in place from the input image. +static bool subtractFrame(pmReadout *in, // Input readout + const pmReadout *sub, // Readout to be subtracted from input + float scale // Scale to apply before subtracting + ) +{ + assert(in); + assert(sub); + + psImage *inImage = in->image; // The input image + psImage *inMask = in->mask; // The input mask + psImage *subImage = sub->image; // The image to be subtracted + psImage *subMask = sub->mask; // The mask for the subtraction image + + // Check parities + int xIpar = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.XPARITY"); + int xSpar = psMetadataLookupS32(NULL, sub->parent->concepts, "CELL.XPARITY"); + if (xIpar != xSpar) { + psError(PS_ERR_UNKNOWN, true, "images for subtraction do not have the same " + "CELL.XPARITY (%d vs %d).\n pmSubtractBias must be upgraded to handle this situation\n", + xIpar, xSpar); + return false; + } + + int yIpar = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.YPARITY"); + int ySpar = psMetadataLookupS32(NULL, sub->parent->concepts, "CELL.YPARITY"); + if (yIpar != ySpar) { + psError(PS_ERR_UNKNOWN, true, "images for subtraction do not have the same " + "CELL.YPARITY (%d vs %d).\n pmSubtractBias must be upgraded to handle this situation\n", + xIpar, xSpar); + return false; + } + + // Offsets of the cells + int x0in = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.X0"); + int y0in = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.Y0"); + int x0sub = psMetadataLookupS32(NULL, sub->parent->concepts, "CELL.X0"); + int y0sub = psMetadataLookupS32(NULL, sub->parent->concepts, "CELL.Y0"); + + if ((inImage->numCols + x0in - x0sub) > subImage->numCols) { + psError(PS_ERR_UNKNOWN, true, "Image does not have enough columns for subtraction.\n"); + return false; + } + if ((inImage->numRows + y0in - y0sub) > subImage->numRows) { + psError(PS_ERR_UNKNOWN, true, "Image does not have enough rows for subtraction.\n"); + return false; + } + + if (scale == 1.0) { + for (int i = 0; i < inImage->numRows; i++) { + for (int j = 0; j < inImage->numCols; j++) { + inImage->data.F32[i][j] -= subImage->data.F32[i+y0in-y0sub][j+x0in-x0sub]; + if (inMask && subMask) { + inMask->data.U8[i][j] |= subMask->data.U8[i+y0in-y0sub][j+x0in-x0sub]; + } + } + } + } else { + for (int i = 0; i < inImage->numRows; i++) { + for (int j = 0; j < inImage->numCols; j++) { + inImage->data.F32[i][j] -= subImage->data.F32[i+y0in-y0sub][j+x0in-x0sub] * scale; + if (inMask && subMask) { + inMask->data.U8[i][j] |= subMask->data.U8[i+y0in-y0sub][j+x0in-x0sub]; + } + } + } + } + + return true; +} + +// Produce an overscan vector from an array of pixels +static psVector *overscanVector(float *chi2, // chi^2 from fit + pmOverscanOptions *overscanOpts, // Overscan options + const psArray *pixels, // Array of vectors containing the pixel values + psStats *myStats // Statistic to use in reducing the overscan + ) +{ + assert(overscanOpts); + assert(pixels); + assert(myStats); + + psStatsOptions statistic = psStatsSingleOption(myStats->options); // Statistic to use + assert(statistic != 0); + + // Reduce the overscans + psVector *reduced = psVectorAlloc(pixels->n, PS_TYPE_F32); // Overscan for each row + psVector *ordinate = psVectorAlloc(pixels->n, PS_TYPE_F32); // Ordinate + psVector *mask = psVectorAlloc(pixels->n, PS_TYPE_U8); // Mask for fitting + + for (int i = 0; i < pixels->n; i++) { + psVector *values = pixels->data[i]; // Vector with overscan values + if (values->n > 0) { + mask->data.U8[i] = 0; + ordinate->data.F32[i] = 2.0*(float)i/(float)pixels->n - 1.0; // Scale to [-1,1] + psVectorStats(myStats, values, NULL, NULL, 0); + reduced->data.F32[i] = psStatsGetValue(myStats, statistic); + } else if (overscanOpts->fitType == PM_FIT_NONE) { + psError(PS_ERR_UNKNOWN, true, "The overscan is not supplied for all points on the " + "image, and no fit is requested.\n"); + return NULL; + } else { + // We'll fit this one out + mask->data.U8[i] = 1; + } + } + + // Fit the overscan, if required + psVector *fitted; // Fitted overscan values + switch (overscanOpts->fitType) { + case PM_FIT_NONE: + // No fitting --- that's easy. + fitted = psMemIncrRefCounter(reduced); + break; + case PM_FIT_POLY_ORD: + if (overscanOpts->poly && (overscanOpts->poly->nX != overscanOpts->order || + overscanOpts->poly->type != PS_POLYNOMIAL_ORD)) { + psFree(overscanOpts->poly); + overscanOpts->poly = NULL; + } + if (! overscanOpts->poly) { + overscanOpts->poly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, overscanOpts->order); + } + psVectorFitPolynomial1D(overscanOpts->poly, mask, 1, reduced, NULL, ordinate); + fitted = psPolynomial1DEvalVector(overscanOpts->poly, ordinate); + break; + case PM_FIT_POLY_CHEBY: + if (overscanOpts->poly && (overscanOpts->poly->nX != overscanOpts->order || + overscanOpts->poly->type != PS_POLYNOMIAL_CHEB)) { + psFree(overscanOpts->poly); + overscanOpts->poly = NULL; + } + if (! overscanOpts->poly) { + overscanOpts->poly = psPolynomial1DAlloc(PS_POLYNOMIAL_CHEB, overscanOpts->order); + } + psVectorFitPolynomial1D(overscanOpts->poly, mask, 1, reduced, NULL, ordinate); + fitted = psPolynomial1DEvalVector(overscanOpts->poly, ordinate); + break; + case PM_FIT_SPLINE: + // XXX I don't think psSpline1D is up to scratch yet --- it has no mask, and requires an + // input spline + overscanOpts->spline = psVectorFitSpline1D(reduced, ordinate); + fitted = psSpline1DEvalVector(overscanOpts->spline, ordinate); + break; + default: + psError(PS_ERR_UNKNOWN, true, "Unknown value for the fitting type: %d\n", overscanOpts->fitType); + return NULL; + break; + } + + if (chi2) { + *chi2 = 0.0; // chi^2 (sort of) + for (int i = 0; i < reduced->n; i++) { + *chi2 += PS_SQR(fitted->data.F32[i] - reduced->data.F32[i]); + } + } + + psFree(reduced); + psFree(ordinate); + psFree(mask); + + return fitted; +} + + +bool pmBiasSubtract(pmReadout *in, pmOverscanOptions *overscanOpts, + const pmReadout *bias, const pmReadout *dark) +{ + psTrace("psModules.detrend", 4, + "---- pmBiasSubtract() begin ----\n"); + PS_ASSERT_PTR_NON_NULL(in, NULL); + PS_ASSERT_IMAGE_NON_NULL(in->image, NULL); + PS_ASSERT_IMAGE_TYPE(in->image, PS_TYPE_F32, NULL); + if (bias) { + PS_ASSERT_IMAGE_NON_NULL(bias->image, NULL); + PS_ASSERT_IMAGE_TYPE(bias->image, PS_TYPE_F32, NULL); + } + if (dark) { + PS_ASSERT_IMAGE_NON_NULL(dark->image, NULL); + PS_ASSERT_IMAGE_TYPE(dark->image, PS_TYPE_F32, NULL); + } + + pmHDU *hdu = pmHDUFromReadout(in); // HDU of interest + + psImage *image = in->image; // The input image + + // Overscan processing + if (overscanOpts) { + // Check for an unallowable pmFit. + if (overscanOpts->fitType != PM_FIT_NONE && overscanOpts->fitType != PM_FIT_POLY_ORD && + overscanOpts->fitType != PM_FIT_POLY_CHEBY && overscanOpts->fitType != PM_FIT_SPLINE) { + psError(PS_ERR_UNKNOWN, true, "Invalid fit type (%d). Returning original image.\n", + overscanOpts->fitType); + return false; + } + + psList *overscans = in->bias; // List of the overscan images + + psStatsOptions statistic = psStatsSingleOption(overscanOpts->stat->options); // Statistic to use + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Multiple or no statistics options set: %p\n", + overscanOpts->stat); + return false; + } + psStats *stats = psStatsAlloc(statistic); // A new psStats, to avoid clobbering original + + psString comment = NULL; // Comment to add + psStringAppend(&comment, "Subtracting overscan (stat %x; type %x; order %d)", + statistic, overscanOpts->fitType, overscanOpts->order); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + comment, ""); + psFree(comment); + + // Reduce all overscan pixels to a single value + if (overscanOpts->single) { + psVector *pixels = psVectorAlloc(0, PS_TYPE_F32); + psListIterator *iter = psListIteratorAlloc(overscans, PS_LIST_HEAD, false); // Iterator + psImage *overscan = NULL; // Overscan image from iterator + while ((overscan = psListGetAndIncrement(iter))) { + int index = pixels->n; // Index + pixels = psVectorRealloc(pixels, pixels->n + overscan->numRows * overscan->numCols); + pixels->n += overscan->numRows * overscan->numCols; + for (int i = 0; i < overscan->numRows; i++) { + memcpy(&pixels->data.F32[index], overscan->data.F32[i], + overscan->numCols * sizeof(psF32)); + index += overscan->numCols; + } + } + psFree(iter); + + (void)psVectorStats(stats, pixels, NULL, NULL, 0); + psFree(pixels); + double reduced = psStatsGetValue(stats, statistic); // Result of statistics + + psString comment = NULL; // Comment to add + psStringAppend(&comment, "Overscan value: %f", reduced); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + + (void)psBinaryOp(image, image, "-", psScalarAlloc((float)reduced, PS_TYPE_F32)); + } else { + // We do the regular overscan subtraction + bool readRows = psMetadataLookupBool(NULL, in->parent->concepts, "CELL.READDIR");// Read direction + float chi2 = NAN; // chi^2 from fit + + if (readRows) { + // The read direction is rows + psArray *pixels = psArrayAlloc(image->numRows); // Array of vectors containing pixels + for (int i = 0; i < pixels->n; i++) { + pixels->data[i] = psVectorAlloc(0, PS_TYPE_F32); + } + + // Pull the pixels out into the vectors + psListIterator *iter = psListIteratorAlloc(overscans, PS_LIST_HEAD, false); // Iterator + psImage *overscan = NULL; // Overscan image from iterator + while ((overscan = psListGetAndIncrement(iter))) { + int diff = image->row0 - overscan->row0; // Offset between the two regions + for (int i = PS_MAX(0,diff); i < PS_MIN(image->numRows, overscan->numRows + diff); i++) { + // i is row on overscan + psVector *values = pixels->data[i]; + int index = values->n; // Index in the vector + values = psVectorRealloc(values, values->n + overscan->numCols); + values->n += overscan->numCols; + memcpy(&values->data.F32[index], overscan->data.F32[i], + overscan->numCols * PSELEMTYPE_SIZEOF(PS_TYPE_F32)); + index += overscan->numCols; + pixels->data[i] = values; // Update the pointer in case it's moved + } + } + psFree(iter); + + // Reduce the overscans + psVector *reduced = overscanVector(&chi2, overscanOpts, pixels, stats); + psFree(pixels); + if (! reduced) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to generate overscan vector.\n"); + return false; + } + + // Subtract row by row + for (int i = 0; i < image->numRows; i++) { + for (int j = 0; j < image->numCols; j++) { + image->data.F32[i][j] -= reduced->data.F32[i]; + } + } + psFree(reduced); + + } else { + // The read direction is columns + psArray *pixels = psArrayAlloc(image->numCols); // Array of vectors containing pixels + for (int i = 0; i < pixels->n; i++) { + psVector *values = psVectorAlloc(0, PS_TYPE_F32); + pixels->data[i] = values; + } + + // Pull the pixels out into the vectors + psListIterator *iter = psListIteratorAlloc(overscans, PS_LIST_HEAD, false); // Iterator + psImage *overscan = NULL; // Overscan image from iterator + while ((overscan = psListGetAndIncrement(iter))) { + int diff = image->col0 - overscan->col0; // Offset between the two regions + for (int i = PS_MAX(0,diff); i < PS_MIN(image->numCols, overscan->numCols + diff); i++) { + // i is column on overscan + psVector *values = pixels->data[i]; + int index = values->n; // Index in the vector + values = psVectorRealloc(values, values->n + overscan->numRows); + for (int j = 0; j < overscan->numRows; j++) { + values->data.F32[index++] = overscan->data.F32[j][i]; + } + values->n += overscan->numRows; + pixels->data[i] = values; // Update the pointer in case it's moved + } + } + psFree(iter); + + // Reduce the overscans + psVector *reduced = overscanVector(&chi2, overscanOpts, pixels, stats); + psFree(pixels); + if (! reduced) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to generate overscan vector.\n"); + return false; + } + + // Subtract column by column + for (int i = 0; i < image->numCols; i++) { + for (int j = 0; j < image->numRows; j++) { + image->data.F32[j][i] -= reduced->data.F32[i]; + } + } + psFree(reduced); + } + + switch (overscanOpts->fitType) { + case PM_FIT_POLY_ORD: + case PM_FIT_POLY_CHEBY: { + psString comment = NULL; // Comment to add + psStringAppend(&comment, "Overscan fit (chi2: %.2f): ", chi2); + psPolynomial1D *poly = overscanOpts->poly; // The polynomial + for (int i = 0; i < poly->nX; i++) { + psStringAppend(&comment, "%.1f ", poly->coeff[i]); + } + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + break; + } + case PM_FIT_SPLINE: { + psSpline1D *spline = overscanOpts->spline; // The spline + for (int i = 0; i < spline->n; i++) { + psStringAppend(&comment, "Overscan fit (chi2: %.2f) %d:", chi2, i); + psPolynomial1D *poly = spline->spline[i]; // i-th polynomial + for (int j = 0; j < poly->nX; j++) { + psStringAppend(&comment, "%.1f ", poly->coeff[i]); + } + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + comment, ""); + psFree(comment); + } + break; + } + case PM_FIT_NONE: + break; + default: + psAbort("Should never get here!!!\n"); + } + + + } + psFree(stats); + } // End of overscan subtraction + + // Bias frame subtraction + if (bias) { + psVector *md5 = psImageMD5(bias->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "BIAS image MD5: "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + md5string, ""); + psFree(md5string); + + if (!subtractFrame(in, bias, 1.0)) { + return false; + } + } + + if (dark) { + // Get the scaling + float inTime = psMetadataLookupF32(NULL, in->parent->concepts, "CELL.DARKTIME"); + float darkTime = psMetadataLookupF32(NULL, dark->parent->concepts, "CELL.DARKTIME"); + + psVector *md5 = psImageMD5(dark->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "DARK image (scale %.3f) MD5: ", inTime/darkTime); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + md5string, ""); + psFree(md5string); + + if (!subtractFrame(in, dark, inTime/darkTime)) { + return false; + } + } + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now, used for reporting + psString timeString = psTimeToISO(time); // String with time + psFree(time); + psStringPrepend(&timeString, "Overscan/bias/dark processing completed at "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + timeString, ""); + psFree(timeString); + + + return true; +} + + Index: /branches/rel-1-1/psModules/src/detrend/pmBias.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmBias.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmBias.h (revision 12167) @@ -0,0 +1,68 @@ +/* @file pmBias.h + * @brief Subtract the overscan, bias and dark + * + * @author George Gusciora, MHPCC + * @author Paul Price, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004--2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM__BIAS_H +#define PM__BIAS_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include + +#include "pmFPA.h" + +/// Type of fit to perform +typedef enum { + PM_FIT_NONE, ///< No fit + PM_FIT_POLY_ORD, ///< Fit ordinary polynomial + PM_FIT_POLY_CHEBY, ///< Fit Chebyshev polynomial + PM_FIT_SPLINE ///< Fit cubic splines +} pmFit; + +/// Options for overscan subtraction +/// +/// The overscan subtraction may be performed by reducing all overscan regions to a single value (e.g., if +/// there is no structure); or the overscan may be fit perpendicular to the read direction (usually the +/// columns) with a particular functional form; or a single value may be subtracted for each read/scan without +/// fitting (if the structure defies characterisation). In any case, statistics are required to reduce +/// multiple values to a single value (either for the scan, or for the entire overscan regions). +typedef struct +{ + // Inputs + bool single; ///< Reduce all overscan regions to a single value? + pmFit fitType; ///< Type of fit to overscan + unsigned int order; ///< Order of polynomial, or number of spline pieces + psStats *stat; ///< Statistic to use when reducing the minor direction + // Outputs + psPolynomial1D *poly; ///< Result of polynomial fit + psSpline1D *spline; ///< Result of spline fit +} +pmOverscanOptions; + +/// Allocator for overscan options +pmOverscanOptions *pmOverscanOptionsAlloc(bool single, ///< Reduce all overscan regions to a single value? + pmFit fitType, ///< Type of fit to overscan + unsigned int order, ///< Order of polynomial, or number of splines + psStats *stat ///< Statistic to use + ); + +/// Subtract the overscan, bias and/or dark +/// +/// Subtracts the overscan, as measured from the bias member of the input readout (if options are non-NULL), +/// bias (if non-NULL) and dark (if non-NULL) scaled by the CELL.DARKTIME concept. +bool pmBiasSubtract(pmReadout *in, ///< Input readout, to be overscan/bias/dark corrected + pmOverscanOptions *overscanOpts, ///< Options for overscan subtraction, or NULL + const pmReadout *bias, ///< Bias image to subtract, or NULL + const pmReadout *dark ///< Dark image to scale and subtract, or NULL + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.c (revision 12167) @@ -0,0 +1,287 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmConfig.h" +#include "pmConfigCommand.h" +#include "pmFPA.h" +#include "pmFPALevel.h" +#include "pmDetrendDB.h" +#include "psPipe.h" +#include "psIOBuffer.h" + +// ************* detrend select functions ************** + +// +static void pmDetrendSelectOptionsFree (pmDetrendSelectOptions *options) +{ + + if (!options) + return; + + psFree (options->camera); + psFree (options->filter); + psFree (options->dettype); + psFree (options->version); + + return; +} + +// define basic options for a new detrend database query +pmDetrendSelectOptions *pmDetrendSelectOptionsAlloc(const char *camera, psTime time, pmDetrendType type) +{ + + pmDetrendSelectOptions *options = psAlloc(sizeof(pmDetrendSelectOptions)); + psMemSetDeallocator(options, (psFreeFunc) pmDetrendSelectOptionsFree); + + // basic options required by every query + options->camera = psStringCopy (camera); + options->time = time; + options->type = type; + + // these other options depend on the type of detrend data + options->filter = NULL; + options->version = NULL; + options->dettype = NULL; + options->exptime = 0.0; + options->airmass = 0.0; + options->dettemp = 0.0; + options->twilight = 0.0; + + options->exptimeSet = false; // not selected + options->airmassSet = false; // not selected + options->dettempSet = false; // not selected + options->twilightSet = false; // not selected + + return options; +} + +static void pmDetrendSelectResultsFree (pmDetrendSelectResults *results) +{ + + if (!results) + return; + + psFree (results->detID); + + return; +} + +pmDetrendSelectResults *pmDetrendSelectResultsAlloc () +{ + + pmDetrendSelectResults *results = psAlloc(sizeof(pmDetrendSelectResults)); + psMemSetDeallocator(results, (psFreeFunc) pmDetrendSelectResultsFree); + + results->detID = NULL; + results->level = PM_FPA_LEVEL_NONE; + + return results; +} + +psString pmDetrendTypeToString (pmDetrendType type) +{ + + # define DETREND_STRING_CASE(TTT) \ +case PM_DETREND_TYPE_##TTT: \ + return psStringCopy (#TTT); + + switch (type) { + DETREND_STRING_CASE (MASK); + DETREND_STRING_CASE (BIAS); + DETREND_STRING_CASE (DARK); + DETREND_STRING_CASE (FLAT); + DETREND_STRING_CASE (FLAT_CORRECTION); + DETREND_STRING_CASE (SHUTTER); + DETREND_STRING_CASE (FRINGE_IMAGE); + DETREND_STRING_CASE (FRINGE_TABLE); + default: + return NULL; + } + return NULL; +} + +// detselect -camera (camera) -time (time) -type (type) [others] +// returns: (type) (class) (exp_flag) DONE +pmDetrendSelectResults *pmDetrendSelect (const pmDetrendSelectOptions *options, + const pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(options, NULL); + PS_ASSERT_PTR_NON_NULL(config, NULL); + PS_ASSERT_PTR_NON_NULL(config->site, NULL); + + int status, exit_status; + psString line = NULL; + char *time = psTimeToISO (&options->time); + + char *type = NULL; + if (options->dettype) { + type = psMemIncrRefCounter (options->dettype); + } else { + type = pmDetrendTypeToString (options->type); + } + unsigned int nFail; + + pmDetrendSelectResults *results = pmDetrendSelectResultsAlloc(); + psStringAppend(&line, "detselect -search -inst %s -det_type %s -time %s", options->camera, type, time); + + if (options->filter) { + psStringAppend(&line, " -filter %s", options->filter); + } + if (options->version) { + psStringAppend(&line, " -version %s", options->version); + } + if (options->exptimeSet) { + psStringAppend(&line, " -exp_time %f", options->exptime); + } + if (options->airmassSet) { + psStringAppend(&line, " -airmass %f", options->airmass); + } + if (options->dettempSet) { + psStringAppend(&line, " -airmass %f", options->dettemp); + } + if (options->twilightSet) { + psStringAppend(&line, " -airmass %f", options->twilight); + } + + pmConfigDatabaseCommand(&line, config); + pmConfigTraceCommand(&line); + psTrace("psModules.detrend", 5, "running %s", line); + + // use psPipe to exec the command, wait for response + psIOBuffer *buffer = psIOBufferAlloc (512); + psPipe *pipe = psPipeOpen (line); + if (!pipe) { + psError (PS_ERR_IO, false, "error calling command %s", line); + goto failure; + } + + status = psIOBufferReadEmpty (buffer, 100, pipe->fd_stdout); + if (!status) { + psError (PS_ERR_IO, false, "detselect is not responding"); + goto failure; + } + exit_status = psPipeClose (pipe); + if (exit_status) { + psError (PS_ERR_IO, false, "error running detselect"); + goto failure; + } + + psTrace("psModules.detrend", 5, "got answer: %s\n", buffer->data); + + nFail = 0; + psMetadata *answer = psMetadataConfigParse (NULL, &nFail, buffer->data, false); + if (!answer) { + psError(PS_ERR_IO, false, "failed to parse response from detselect\n"); + psLogMsg ("psModule.detrend", PS_LOG_ERROR, "detselect response (%d bytes):\n %s\n", buffer->n, buffer->data); + goto failure; + } + + psMetadata *md = psMetadataLookupPtr (NULL, answer, "detExp"); + if (!md) { + psError(PS_ERR_IO, false, "detselect response is missing 'detExp' Metadata\n"); + psLogMsg ("psModule.detrend", PS_LOG_ERROR, "detselect response:\n %s\n", buffer->data); + goto failure; + } + + bool mdstatus; + results->level = 0; + int detID = psMetadataLookupS32 (&mdstatus, md, "det_id"); + int iteration = psMetadataLookupS32 (&mdstatus, md, "iteration"); + + results->detID = NULL; // it should be NULL already from the Alloc above + psStringAppend (&results->detID, " -det_id %d -iteration %d ", detID, iteration); + + psTrace("psModules.detrend", 5, "generated detID %s\n", results->detID); + + psFree (answer); + psFree (buffer); + psFree (pipe); + psFree (line); + psFree (time); + psFree (type); + return results; + +failure: + psFree (results); + psFree (pipe); + psFree (buffer); + psFree (line); + psFree (type); + psFree (time); + return NULL; +} + +// ************* detrend file functions ************** + +// detselect -select -detID (detID) -classID (classID) +// returns: (detID) (classID) (filename) DONE +char *pmDetrendFile (const char *detID, const char *classID, const pmConfig *config) +{ + unsigned int nFail; + + PS_ASSERT_PTR_NON_NULL(detID, NULL); + PS_ASSERT_PTR_NON_NULL(classID, NULL); + + bool status; + psString line = NULL; + psArray *array = NULL; + + // generate the detselect command + psStringAppend (&line, "detselect -select %s -class_id %s", detID, classID); + pmConfigDatabaseCommand(&line, config); + pmConfigTraceCommand(&line); + psTrace("psModules.detrend", 5, "running %s", line); + + // use psPipe to exec the command, wait for response + psIOBuffer *buffer = psIOBufferAlloc (512); + psPipe *pipe = psPipeOpen (line); + if (!pipe) { + psError (PS_ERR_IO, false, "error calling command %s", line); + goto failure; + } + status = psIOBufferReadEmpty (buffer, 100, pipe->fd_stdout); + if (!status) { + psError (PS_ERR_IO, false, "detselect is not responding"); + goto failure; + } + status = psPipeClose (pipe); + if (status) { + psError (PS_ERR_IO, false, "error running detselect"); + goto failure; + } + + psTrace("psModules.detrend", 5, "got answer: %s\n", buffer->data); + + psMetadata *answer = psMetadataConfigParse (NULL, &nFail, buffer->data, false); + if (!answer) { + psError(PS_ERR_IO, false, "failed to parse response from detselect\n"); + psLogMsg ("psModule.detrend", PS_LOG_ERROR, "detselect response (%d bytes):\n %s\n", buffer->n, buffer->data); + goto failure; + } + psMetadata *md = psMetadataLookupPtr (NULL, answer, "detNormalizedImfile"); + if (!md) { + psError(PS_ERR_IO, false, "detselect response is missing 'detNormalizedImfile' Metadata\n"); + psLogMsg ("psModule.detrend", PS_LOG_ERROR, "detselect response:\n %s\n", buffer->data); + goto failure; + } + + char *result = psStringCopy (psMetadataLookupStr (NULL, md, "uri")); + psTrace("psModules.detrend", 5, "detrend file: %s\n", result); + + psFree (answer); + psFree (pipe); + psFree (buffer); + psFree (line); + return result; + +failure: + psFree (array); + psFree (pipe); + psFree (buffer); + psFree (line); + return NULL; +} Index: /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmDetrendDB.h (revision 12167) @@ -0,0 +1,79 @@ +/* @file pmDetrendDB.h + * @brief Tools to query the detrend database system + * + * the functions in here do not perform the detrend database queries directly. all interfaces + * to the detrend database go through the external dettools functions. this allows the modules + * and directly dependent program to be sufficiently independent of the database schema that it + * can be used with any properly defined detrend database tables. + * + * @author EAM, IfA + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-18 21:03:20 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_DETREND_DB_H +#define PM_DETREND_DB_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include "pmConfig.h" +#include "pmFPALevel.h" + +typedef enum { + PM_DETREND_TYPE_MASK, + PM_DETREND_TYPE_BIAS, + PM_DETREND_TYPE_DARK, + PM_DETREND_TYPE_FLAT, + PM_DETREND_TYPE_FLAT_CORRECTION, + PM_DETREND_TYPE_SHUTTER, + PM_DETREND_TYPE_FRINGE_IMAGE, + PM_DETREND_TYPE_FRINGE_TABLE, + PM_DETREND_TYPE_BACKGROUND, +} pmDetrendType; + +typedef struct +{ + char *camera; // name of camera + char *version; // optional version string + char *filter; // name of filter + char *dettype; // actual detrend type name + float exptime; // exposure time (for dark, maybe flat & fringe) + float airmass; // for fringe + float dettemp; // for fringe + float twilight; // hours (or seconds?) since/before nearest twilight + psTime time; // time of input data + pmDetrendType type; // type of detrend data + + bool exptimeSet; + bool airmassSet; + bool dettempSet; + bool twilightSet; +} +pmDetrendSelectOptions; + +typedef struct +{ + char *detID; // identifier of detrend run + pmFPALevel level; // level in FPA hierarchy of individual file +} +pmDetrendSelectResults; + +typedef struct +{ + char *detID; // identifier of detrend image + char *classID; // level in FPA hierarchy of individual file +} +pmDetrendFileOptions; + +psString pmDetrendTypeToString (pmDetrendType type); + +pmDetrendSelectOptions *pmDetrendSelectOptionsAlloc(const char *camera, psTime time, pmDetrendType type); +pmDetrendSelectResults *pmDetrendSelectResultsAlloc(); +pmDetrendSelectResults *pmDetrendSelect (const pmDetrendSelectOptions *options, const pmConfig *config); +char *pmDetrendFile (const char *detID, const char *classID, const pmConfig *config); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/detrend/pmFlatField.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFlatField.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFlatField.c (revision 12167) @@ -0,0 +1,118 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "pmFPA.h" +#include "pmHDUUtils.h" +#include "pmFPAMaskWeight.h" +#include "pmFlatField.h" + + +bool pmFlatField(pmReadout *in, const pmReadout *flat) +{ + PS_ASSERT_PTR_NON_NULL(in, false); + PS_ASSERT_PTR_NON_NULL(in->image, false); + PS_ASSERT_IMAGE_NON_EMPTY(in->image, false); + PS_ASSERT_PTR_NON_NULL(flat, false); + PS_ASSERT_PTR_NON_NULL(flat->image, false); + PS_ASSERT_IMAGE_NON_EMPTY(flat->image, false); + if (in->mask) { + PS_ASSERT_IMAGE_TYPE(in->mask, PS_TYPE_MASK, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(in->mask, in->image, false); + } + PS_ASSERT_IMAGE_TYPE(flat->image, in->image->type.type, false); + if (flat->mask) { + PS_ASSERT_IMAGE_TYPE(flat->mask, PS_TYPE_MASK, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(flat->mask, flat->image, false); + } + + psImage *inImage = in->image; // Input image + psImage *inMask = in->mask; // Mask for input image + psImage *flatImage = flat->image; // Flat-field image + psImage *flatMask = flat->mask; // Mask for flat-field image + + // Add flat-field MD5 to header + pmHDU *hdu = pmHDUFromReadout(in); // HDU of interest + psVector *md5 = psImageMD5(flat->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "FLAT image MD5: "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + md5string, ""); + psFree(md5string); + + // Check input image is not larger than flat image; mask is the same size as the input + if (inImage->numRows > flatImage->numRows || inImage->numCols > flatImage->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Input image (%dx%d) is larger than flat-field image " + "(%dx%d).\n", inImage->numCols, inImage->numRows, flatImage->numCols, flatImage->numRows); + return false; + } + + // Offsets on the chip + int x0in = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.X0"); + int y0in = psMetadataLookupS32(NULL, in->parent->concepts, "CELL.Y0"); + int x0flat = psMetadataLookupS32(NULL, flat->parent->concepts, "CELL.X0"); + int y0flat = psMetadataLookupS32(NULL, flat->parent->concepts, "CELL.Y0"); + + // Determine offset based on image offset with chip offset: input frame to flat frame + int yOffset = in->row0 + y0in - flat->row0 - y0flat; + int xOffset = in->col0 + x0in - flat->col0 - x0flat; + + // Check that offsets are within image limits + if (inImage->numRows + yOffset > flatImage->numRows || + inImage->numCols + xOffset > flatImage->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, "Input image (%dx%d) with offsets (%d,%d) is larger than " + "flat-field image (%dx%d).\n", inImage->numCols, inImage->numRows, xOffset, yOffset, + flatImage->numCols, flatImage->numRows); + return false; + } + + // Macro for all PS types + #define FLAT_DIVISION_CASE(TYPE, SPECIAL) \ +case PS_TYPE_##TYPE: \ + for (int j = 0; j < inImage->numRows; j++) { \ + for (int i = 0; i < inImage->numCols; i++) { \ + ps##TYPE flatValue = flatImage->data.TYPE[j + yOffset][i + xOffset]; \ + if (flatValue <= 0.0 || (flatMask && flatMask->data.U8[j + yOffset][i + xOffset])) { \ + if (inMask) { \ + inMask->data.U8[j][i] |= PM_MASK_FLAT; \ + } \ + inImage->data.TYPE[j][i] = SPECIAL; \ + } else { \ + inImage->data.TYPE[j][i] /= flatValue; \ + } \ + } \ + } \ + break; + + switch (inImage->type.type) { + FLAT_DIVISION_CASE(U8, 0); + FLAT_DIVISION_CASE(U16, 0); + FLAT_DIVISION_CASE(U32, 0); + FLAT_DIVISION_CASE(U64, 0); + FLAT_DIVISION_CASE(S8, 0); + FLAT_DIVISION_CASE(S16, 0); + FLAT_DIVISION_CASE(S32, 0); + FLAT_DIVISION_CASE(S64, 0); + FLAT_DIVISION_CASE(F32, NAN); + FLAT_DIVISION_CASE(F64, NAN); + default: + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Unsupported type for input image: %x\n", + inImage->type.type); + return false; + } + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now, used for reporting + psString timeString = psTimeToISO(time); // String with time + psFree(time); + psStringPrepend(&timeString, "Flat-field processing completed at "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + timeString, ""); + psFree(timeString); + + + return true; +} Index: /branches/rel-1-1/psModules/src/detrend/pmFlatField.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFlatField.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFlatField.h (revision 12167) @@ -0,0 +1,31 @@ +/* @file pmFlatField.h + * @brief Apply flat field calibration + * + * @author Ross Harman, MHPCC + * @author Paul Price, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FLAT_FIELD_H +#define PM_FLAT_FIELD_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include "pmFPA.h" + +/// Apply flat field calibration to a readout +/// +/// This function applies the flat field calibration to the input readout. Support is available for different +/// image types, though the input and flat images must have the same type. The relative offsets between the +/// input and flat images is determined from the readout row0,col0 and the CELL.X0 and CELL.Y0 concepts. +/// Normalisation of the flat is left as the responsibility of the caller. Non-positive pixels in the flat +/// are masked, if there is a mask present in the input readout. +bool pmFlatField(pmReadout *in, ///< Readout with input image + const pmReadout *flat ///< Readout with flat image + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.c (revision 12167) @@ -0,0 +1,189 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFlatNormalize.h" + +// I'm not sure that many many iterations are required, but rather suspect that the system converges within a +// few with absolutely no trouble (it *is* over-constrained). For this reason, I'm putting the maximum number +// of iterations and tolerance as preset values. +#define MAXITER 10 // Maximum number of iterations +#define TOLERANCE 1e-3 // Minimum tolerance for convergance + + +bool pmFlatNormalize(psVector **expFluxesPtr, psVector **chipGainsPtr, const psImage *bgMatrix) +{ + PS_ASSERT_PTR_NON_NULL(bgMatrix, false); + PS_ASSERT_IMAGE_NON_NULL(bgMatrix, false); + + int numExps = bgMatrix->numRows; // Number of exposures + int numChips = bgMatrix->numCols; // Number of chips with which each exposure is made + + psVector *expFluxes; // Dereferenced version of expFluxesPtr + if (expFluxesPtr) { + if (*expFluxesPtr) { + PS_ASSERT_VECTOR_TYPE(*expFluxesPtr, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(*expFluxesPtr, (long)numExps, false); + } else { + *expFluxesPtr = psVectorAlloc(numExps, PS_TYPE_F32); + } + expFluxes = psMemIncrRefCounter(*expFluxesPtr); + } else { + expFluxes = psVectorAlloc(numExps, PS_TYPE_F32); + } + + psVector *chipGains; // Dereferenced version of chipGainsPtr + if (chipGainsPtr) { + if (*chipGainsPtr) { + PS_ASSERT_VECTOR_TYPE(*chipGainsPtr, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(*chipGainsPtr, (long)numChips, false); + } else { + *chipGainsPtr = psVectorAlloc(numChips, PS_TYPE_F32); + psVectorInit(*chipGainsPtr, 1.0); + } + chipGains = psMemIncrRefCounter(*chipGainsPtr); + } else { + chipGains = psVectorAlloc(numChips, PS_TYPE_F32); + psVectorInit(chipGains, 1.0); + } + + // Take the logarithms + psImage *flux = psImageCopy(NULL, bgMatrix, PS_TYPE_F32); // Copy of the input flux levels matrix + psImage *fluxMask = psImageAlloc(numChips, numExps, PS_TYPE_U8); // Mask for bad measurements + psImageInit(fluxMask, 0); + psVector *gainMask = psVectorAlloc(numChips, PS_TYPE_U8); // Mask for bad gains + psVectorInit(gainMask, 0); + psVector *expMask = psVectorAlloc(numExps, PS_TYPE_U8); // Mask for bad exposures + psVectorInit(expMask, 0); + for (int i = 0; i < numChips; i++) { + // Note: the input gains are in e/ADU; we want to work with ADU/e (bg [ADU] = g [ADU/e] * f [e]) + // Hence the minus sign + if (isfinite(chipGains->data.F32[i]) && chipGains->data.F32[i] > 0) { + chipGains->data.F32[i] = -logf(chipGains->data.F32[i]); + } else { + chipGains->data.F32[i] = 0.0; // Take a wild guess, gain ~ 1 e/ADU + } + + for (int j = 0; j < numExps; j++) { + if (isfinite(flux->data.F32[j][i]) && flux->data.F32[j][i] > 0) { + flux->data.F32[j][i] = logf(flux->data.F32[j][i]); + } else { + // Blank out this measurement + fluxMask->data.U8[j][i] = 1; + flux->data.F32[j][i] = NAN; + } + } + } + + // Not really sure that we need to iterate, but here we go anyway... + + float diff = INFINITY; // Difference from previous iteration + psVector *oldExpFluxes = NULL; // The fluxes in the previous iteration + psVector *oldChipGains = NULL; // Chip gains in the previous iteration + for (int iter = 0; iter < MAXITER && diff > TOLERANCE; iter++) { + // Improve on the exposure fluxes + int numFluxes = 0; // Number of fluxes + for (int i = 0; i < numExps; i++) { + if (expMask->data.U8[i]) { + psTrace("psModules.detrend", 7, "Flux for exposure %d is masked.\n", i); + continue; + } + numFluxes++; + float sum = 0.0; // Sum of F_ij - G_j + int number = 0; // Number of chips contributing + for (int j = 0; j < numChips; j++) { + if (!gainMask->data.U8[j] && !fluxMask->data.U8[i][j]) { + sum += flux->data.F32[i][j] - chipGains->data.F32[j]; + number++; + } + } + if (number > 0) { + expFluxes->data.F32[i] = sum / (float)number; + } else { + expMask->data.U8[i] = 1; + expFluxes->data.F32[i] = NAN; + } + psTrace("psModules.detrend", 7, "Flux for exposure %d is %lf\n", i, expf(expFluxes->data.F32[i])); + } + + // Improve on the gains + float meanGain = 0.0; // Mean gain + int numGains = 0; // Number of gains + for (int i = 0; i < numChips; i++) { + if (gainMask->data.U8[i]) { + continue; + } + float sum = 0.0; // Sum of F_ji - S_j + int number = 0; // Numer of sources contributing + for (int j = 0; j < numExps; j++) { + if (!fluxMask->data.U8[j][i]) { + sum += flux->data.F32[j][i] - expFluxes->data.F32[j]; + number++; + } + } + if (number > 0) { + chipGains->data.F32[i] = sum / (float)number; + } else { + gainMask->data.U8[i] = 1; + chipGains->data.F32[i] = NAN; + } + psTrace("psModules.detrend", 7, "Gain for chip %d is %lf\n", i, expf(-chipGains->data.F32[i])); + meanGain += expf(chipGains->data.F32[i]); + numGains++; + } + + // Normalise the mean gain to unity, and measure the difference + meanGain /= (float)numGains; + meanGain = logf(meanGain); + if (iter > 0) { + diff = 0.0; + for (int i = 0; i < numChips; i++) { + if (gainMask->data.U8[i]) { + continue; + } + chipGains->data.F32[i] -= meanGain; + diff += abs((chipGains->data.F32[i] - oldChipGains->data.F32[i]) / chipGains->data.F32[i]); + } + for (int i = 0; i < numExps; i++) { + if (expMask->data.U8[i]) { + continue; + } + diff += abs((expFluxes->data.F32[i] - oldExpFluxes->data.F32[i]) / expFluxes->data.F32[i]); + } + } + + psTrace("psModules.detrend", 2, "Iteration %d: difference is %e\n", iter, diff); + + // Copy the new to the old + oldChipGains = psVectorCopy(oldChipGains, chipGains, PS_TYPE_F32); + oldExpFluxes = psVectorCopy(oldExpFluxes, expFluxes, PS_TYPE_F32); + } + psFree(flux); + psFree(fluxMask); + psFree(oldChipGains); + psFree(oldExpFluxes); + + // Un-log the vectors + for (int i = 0; i < numChips; i++) { + if (!gainMask->data.U8[i]) { + chipGains->data.F32[i] = expf(chipGains->data.F32[i]); + } + } + for (int i = 0; i < numExps; i++) { + if (!expMask->data.U8[i]) { + expFluxes->data.F32[i] = expf(expFluxes->data.F32[i]); + } + } + psFree(gainMask); + psFree(expMask); + + psFree(chipGains); + psFree(expFluxes); + + return (diff < TOLERANCE); // Did we converge? +} Index: /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFlatNormalize.h (revision 12167) @@ -0,0 +1,33 @@ +/* @file pmFlatNormalize.h + * @brief Normalize flat-field measurements + * + * @author Paul Price, IfA + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FLAT_NORMALIZE_H +#define PM_FLAT_NORMALIZE_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include + +/// Normalize flat-field measurements +/// +/// We have f_ij = g_i s_j where f_ij is the flux recorded for chip i and integration j, g_i is the gain for +/// the i-th chip, s_j is the flux of the source in the j-th integration. An initial guess for the chip gains +/// might be helpful, but is not necessary. The matrix of background measurements contains the background for +/// the flat fields used in the combination, as a function of exposure (rows) and chip (columns). The +/// exposure fluxes and chip gains are modified upon return with the solved values. Returns true if the +/// solution converged. +bool pmFlatNormalize(psVector **expFluxesPtr, ///< Flux in each exposure, or NULL; modified + psVector **chipGainsPtr, ///< Initial guess of the chip gains or NULL; modified + const psImage *bgMatrix ///< Background measurements: rows are exposures, cols are chips + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmFringeStats.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFringeStats.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFringeStats.c (revision 12167) @@ -0,0 +1,1055 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmFPA.h" +#include "pmFringeStats.h" + + +// Future optimisations for speed: +// +// 1. Clipping --- don't re-do the matrix setup again, but carry matrix and vector around, subtract +// contributions from clipped data points. +// 2. Faster psImageStats (use memcpy?) + + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeRegions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +static void fringeRegionsFree(pmFringeRegions *fringe) +{ + psFree(fringe->x); + psFree(fringe->y); + psFree(fringe->mask); + return; +} + +pmFringeRegions *pmFringeRegionsAlloc(int nPts, int dX, int dY, int nX, int nY) +{ + pmFringeRegions *fringe = psAlloc(sizeof(pmFringeRegions)); + (void)psMemSetDeallocator(fringe, (psFreeFunc)fringeRegionsFree); + + fringe->x = NULL; + fringe->y = NULL; + fringe->mask = NULL; + + fringe->nRequested = nPts; + fringe->nAccepted = 0; + + fringe->dX = dX; + fringe->dY = dY; + fringe->nX = nX; + fringe->nY = nY; + + return fringe; +} + +bool pmFringeRegionsCreatePoints(pmFringeRegions *fringe, const psImage *image, psRandom *random) +{ + PS_ASSERT_PTR_NON_NULL(fringe, false); + PS_ASSERT_PTR_NON_NULL(image, false); + PS_ASSERT_IMAGE_NON_EMPTY(image, false); + + double frnd; + // create fringe->nRequested + + psRandom *rng; + if (random) { + rng = psMemIncrRefCounter(random); + } else { + rng = psRandomAlloc(PS_RANDOM_TAUS, 0); + } + + fringe->x = psVectorRecycle(fringe->x, fringe->nRequested, PS_TYPE_F32); + fringe->y = psVectorRecycle(fringe->y, fringe->nRequested, PS_TYPE_F32); + fringe->mask = psVectorRecycle(fringe->mask, fringe->nRequested, PS_TYPE_U8); + fringe->x->n = fringe->y->n = fringe->mask->n = fringe->nRequested; + psVectorInit(fringe->mask, 0); + + int nX = image->numCols; + int nY = image->numRows; + + psF32 *xPt = fringe->x->data.F32; + psF32 *yPt = fringe->y->data.F32; + + int dX = fringe->dX; + int dY = fringe->dY; + + // generate random points located within image bounds + for (int i = 0; i < fringe->nRequested; i++) { + frnd = psRandomUniform(rng); + xPt[i] = (nX - 2*dX)* frnd + dX; + frnd = psRandomUniform(rng); + yPt[i] = (nY - 2*dY)* frnd + dY; + } + + psFree(rng); + + return true; +} + +bool pmFringeRegionsWriteFits(psFits *fits, psMetadata *header, + const pmFringeRegions *regions, const char *extname) +{ + // Make sure the input is well-behaved + PS_ASSERT_PTR_NON_NULL(fits, false); + PS_ASSERT_PTR_NON_NULL(regions, false); + psVector *x = regions->x; // The x positions + psVector *y = regions->y; // The y positions + psVector *mask = regions->mask; // The region mask + int numRows = regions->nRequested; // Number of rows in the table + PS_ASSERT_INT_POSITIVE(numRows, false); + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(x, (long)numRows, false); + PS_ASSERT_VECTOR_SIZE(y, (long)numRows, false); + if (mask) { + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + PS_ASSERT_VECTOR_SIZE(mask, (long)numRows, false); + } + + // We need to write: + // Scalars: dX, dY, nX, nY + // Vectors: x, y, mask + + psMetadata *scalars = psMemIncrRefCounter(header); // Metadata to hold the scalars; will be the header + if (!scalars) { + scalars = psMetadataAlloc(); + } + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGDX", PS_META_REPLACE, "Median box half-width", + regions->dX); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGDY", PS_META_REPLACE, "Median box half-height", + regions->dY); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGNX", PS_META_REPLACE, "Large-scale smoothing in x", + regions->nX); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGNY", PS_META_REPLACE, "Large-scale smoothing in y", + regions->nY); + + psArray *table = psArrayAlloc(numRows); // The table + // Translate the vectors into the required format for psFitsWriteTable() + for (long i = 0; i < numRows; i++) { + psMetadata *row = psMetadataAlloc(); + psMetadataAddF32(row, PS_LIST_TAIL, "x", PS_META_REPLACE, "Fringe position in x", x->data.F32[i]); + psMetadataAddF32(row, PS_LIST_TAIL, "y", PS_META_REPLACE, "Fringe position in y", y->data.F32[i]); + psU8 maskValue = 0; + if (mask && mask->data.U8[i]) { + maskValue = 0xff; + } + psMetadataAddU8(row, PS_LIST_TAIL, "mask", PS_META_REPLACE, "Mask", maskValue); + table->data[i] = row; + } + + bool success; // Success of operation + if (!(success = psFitsWriteTable(fits, scalars, table, extname))) { + psError(PS_ERR_IO, false, "Unable to write fringe data to extension %s\n", extname); + } + psFree(scalars); + psFree(table); + + return success; +} + +pmFringeRegions *pmFringeRegionsReadFits(psMetadata *header, const psFits *fits, const char *extname) +{ + PS_ASSERT_PTR_NON_NULL(fits, NULL); + + if (extname && strlen(extname) > 0) { + if (!psFitsMoveExtName(fits, extname)) { + psError(PS_ERR_IO, false, "Unable to move to extension %s\n", extname); + return NULL; + } + } else if (!psFitsMoveExtNum(fits, 0, false)) { + psError(PS_ERR_IO, false, "Unable to move to PHU\n"); + return NULL; + } + + psMetadata *headerCopy = psMemIncrRefCounter(header); // Copy of the header, or NULL + + headerCopy = psFitsReadHeader(headerCopy, fits); // The FITS header + if (!headerCopy) { + psError(PS_ERR_IO, false, "Unable to read header for extension %s\n", extname); + psFree(header); + return NULL; + } + + // Read the scalars from the header + #define READ_SCALAR(SCALAR, NAME) \ + int SCALAR = psMetadataLookupS32(&mdok, headerCopy, NAME); \ + if (!mdok || SCALAR <= 0) { \ + psError(PS_ERR_IO, true, "Unable to find " NAME " in header of extension %s.\n", extname); \ + psFree(headerCopy); \ + return NULL; \ + } + + // Need to retrieve the scalars: dX, dY, nX, nY + bool mdok = true; // Status of MD lookup + READ_SCALAR(dX, "PSFRNGDX"); + READ_SCALAR(dY, "PSFRNGDY"); + READ_SCALAR(nX, "PSFRNGNX"); + READ_SCALAR(nY, "PSFRNGNY"); + psFree(headerCopy); + + // Now the vectors: x, y, mask + psArray *table = psFitsReadTable(fits); // The table + long numRows = table->n; // Number of rows + + pmFringeRegions *regions = pmFringeRegionsAlloc(numRows, dX, dY, nX, nY); // The fringe regions + psVector *x = psVectorAlloc(numRows, PS_TYPE_F32); // x position + psVector *y = psVectorAlloc(numRows, PS_TYPE_F32); // y position + psVector *mask = psVectorAlloc(numRows, PS_TYPE_U8); // mask + regions->x = x; + regions->y = y; + regions->mask = mask; + + #define READ_REGIONS_ROW(VECTOR, TYPE, NAME, DESCRIPTION) \ + VECTOR->data.TYPE[i] = psMetadataLookup##TYPE(&mdok, row, NAME); \ + if (!mdok) { \ + psError(PS_ERR_IO, true, "Unable to find " #DESCRIPTION " .\n"); \ + psFree(table); \ + psFree(regions); \ + return NULL; \ + } + + // Translate the table into vectors + for (long i = 0; i < numRows; i++) { + psMetadata *row = table->data[i]; // Table row + READ_REGIONS_ROW(x, F32, "x", "x position"); + READ_REGIONS_ROW(y, F32, "y", "y position"); + READ_REGIONS_ROW(mask, U8, "mask", "mask"); + } + psFree(table); + + return regions; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeStats +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +static void fringeStatsFree(pmFringeStats *stats) +{ + psFree(stats->regions); + psFree(stats->f); + psFree(stats->df); +} + +pmFringeStats *pmFringeStatsAlloc(pmFringeRegions *regions) +{ + PS_ASSERT_PTR_NON_NULL(regions, false); + + pmFringeStats *stats = psAlloc(sizeof(pmFringeStats)); + (void)psMemSetDeallocator(stats, (psFreeFunc)fringeStatsFree); + + int numRegions = regions->nRequested; // Number of regions + stats->regions = psMemIncrRefCounter(regions); + stats->f = psVectorAlloc(numRegions, PS_TYPE_F32); + stats->df = psVectorAlloc(numRegions, PS_TYPE_F32); + + return stats; +} + +pmFringeStats *pmFringeStatsMeasure(pmFringeRegions *fringe, const pmReadout *readout, psMaskType maskVal) +{ + PS_ASSERT_PTR_NON_NULL(fringe, NULL); + PS_ASSERT_PTR_NON_NULL(readout, NULL); + PS_ASSERT_PTR_NON_NULL(readout->image, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(readout->image, NULL); + + if (!fringe->x || !fringe->y) { + // create the fringe vectors for this image + pmFringeRegionsCreatePoints(fringe, readout->image, NULL); + } + + PS_ASSERT_PTR_NON_NULL(fringe->x, false); + PS_ASSERT_PTR_NON_NULL(fringe->y, false); + + pmFringeStats *measurements = pmFringeStatsAlloc(fringe); + + psF32 *xPt = fringe->x->data.F32; + psF32 *yPt = fringe->y->data.F32; + psF32 *fPt = measurements->f->data.F32; + psF32 *dfPt = measurements->df->data.F32; + + int dX = fringe->dX; + int dY = fringe->dY; + + psImage *image = readout->image; + psImage *mask = readout->mask; + + psStats *median = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); // Median statistics only + psStats *medianSd = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); // Median and SD + + // Measure the sky in each smoothing box + psImage *sky = psImageAlloc(fringe->nX, fringe->nY, PS_TYPE_F32); + for (int i = 0; i < fringe->nY; i++) { + int y0 = image->row0 + (float)i * (float)image->numRows / (float)fringe->nY; + int y1 = image->row0 + (float)(i + 1) * (float)image->numRows / (float)fringe->nY; + for (int j = 0; j < fringe->nX; j++) { + int x0 = image->col0 + (float)j * (float)image->numCols / (float)fringe->nX; + int x1 = image->col0 + (float)(j + 1) * (float)image->numCols / (float)fringe->nX; + psRegion region = psRegionSet(x0, x1, y0, y1); + psImage *subImage = psImageSubset(image, region); // Subimage of the sky region + psImage *subMask = NULL; + if (mask) { + subMask = psImageSubset(mask, region); // Subimage of the sky region + } + psImageStats(median, subImage, subMask, maskVal); + sky->data.F32[i][j] = median->sampleMedian; + psFree(subImage); + psFree(subMask); + } + } + + for (int i = 0; i < fringe->x->n; i++) { + psRegion region = psRegionSet(image->col0 + xPt[i] - dX, + image->col0 + xPt[i] + dX + 1, + image->row0 + yPt[i] - dY, + image->row0 + yPt[i] + dY + 1); + psImage *subImage = psImageSubset(image, region); + psImage *subMask = NULL; + if (mask) { + subMask = psImageSubset(mask, region); + } + psImageStats(medianSd, subImage, subMask, maskVal); + psFree(subImage); + psFree(subMask); + + int xSky = xPt[i] / (float)image->numCols * (float)sky->numCols; + int ySky = yPt[i] / (float)image->numRows * (float)sky->numRows; + + fPt[i] = medianSd->sampleMedian - sky->data.F32[ySky][xSky]; + dfPt[i] = 1.0 / medianSd->sampleStdev; + + psTrace("psModules.detrend", 7, "[%d:%d,%d:%d]: %f %f\n", (int)region.x0, (int)region.x1, + (int)region.y0, (int)region.y1, fPt[i], dfPt[i]); + } + psFree(sky); + psFree(median); + psFree(medianSd); + + return measurements; +} + +bool pmFringeStatsWriteFits(psFits *fits, + psMetadata *header, + const pmFringeStats *fringe, + const char *extname + ) +{ + // Make sure the input is well-behaved + PS_ASSERT_PTR_NON_NULL(fits, false); + PS_ASSERT_PTR_NON_NULL(fringe, false); + pmFringeRegions *regions = fringe->regions; // The fringe regions + PS_ASSERT_PTR_NON_NULL(regions, false); + int numRows = regions->nRequested; // Number of rows in the table + PS_ASSERT_INT_POSITIVE(numRows, false); + psVector *f = fringe->f; // The fringe measurements + psVector *df = fringe->df; // The fringe standard deviatiations + PS_ASSERT_VECTOR_NON_NULL(f, false); + PS_ASSERT_VECTOR_NON_NULL(df, false); + PS_ASSERT_VECTOR_TYPE(f, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(df, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(f, (long)numRows, false); + PS_ASSERT_VECTOR_SIZE(df, (long)numRows, false); + + // We need to write: + // Vectors: f, df + psArray *table = psArrayAlloc(numRows); // The table + // Translate the vectors into the required format for psFitsWriteTable() + for (long i = 0; i < numRows; i++) { + psMetadata *row = psMetadataAlloc(); + psMetadataAddF32(row, PS_LIST_TAIL, "f", PS_META_REPLACE, "Fringe measurement", f->data.F32[i]); + psMetadataAddF32(row, PS_LIST_TAIL, "df", PS_META_REPLACE, "Fringe stdev", df->data.F32[i]); + table->data[i] = row; + } + + if (!psFitsWriteTable(fits, header, table, extname)) { + psError(PS_ERR_IO, false, "Unable to write fringe data to extension %s\n", extname); + psFree(table); + return false; + } + + psFree(table); + return true; +} + +pmFringeStats *pmFringeStatsReadFits(psMetadata *header, const psFits *fits, const char *extname, + pmFringeRegions *regions) +{ + PS_ASSERT_PTR_NON_NULL(fits, NULL); + PS_ASSERT_PTR_NON_NULL(regions, NULL); + PS_ASSERT_INT_POSITIVE(regions->nRequested, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(regions->x, regions->y, NULL); + PS_ASSERT_VECTOR_SIZE(regions->x, (long)regions->nRequested, NULL); + + if (extname && strlen(extname) > 0) { + if (!psFitsMoveExtName(fits, extname)) { + psError(PS_ERR_IO, false, "Unable to move to extension %s\n", extname); + return NULL; + } + } else if (!psFitsMoveExtNum(fits, 0, false)) { + psError(PS_ERR_IO, false, "Unable to move to PHU\n"); + return NULL; + } + + psMetadata *headerCopy = psMemIncrRefCounter(header); // Copy of the header, or NULL + + headerCopy = psFitsReadHeader(headerCopy, fits); // The FITS header + if (!headerCopy) { + psError(PS_ERR_IO, false, "Unable to read header for extension %s\n", extname); + psFree(headerCopy); + return NULL; + } + psFree(headerCopy); + + // Now the vectors: f, df + psArray *table = psFitsReadTable(fits); // The table + long numRows = table->n; // Number of rows + + pmFringeStats *fringes = pmFringeStatsAlloc(regions); // The fringe measurements + psVector *f = fringes->f; // fringe measurement + psVector *df = fringes->df; // fringe stdev + + #define READ_STATS_ROW(VECTOR, TYPE, NAME, DESCRIPTION) \ + VECTOR->data.TYPE[i] = psMetadataLookup##TYPE(&mdok, row, NAME); \ + if (!mdok) { \ + psError(PS_ERR_IO, true, "Unable to find " #DESCRIPTION " .\n"); \ + psFree(table); \ + psFree(fringes); \ + return NULL; \ + } + + // Translate the table into vectors + bool mdok; // Status of MD lookup + for (long i = 0; i < numRows; i++) { + psMetadata *row = table->data[i]; // Table row + READ_STATS_ROW(f, F32, "f", "fringe measurement"); + READ_STATS_ROW(df, F32, "df", "fringe standard deviation"); + } + psFree(table); + + return fringes; +} + + +pmFringeStats *pmFringeStatsConcatenate(const psArray *fringes, const psVector *x0, const psVector *y0) +{ + PS_ASSERT_PTR_NON_NULL(fringes, NULL); + PS_ASSERT_PTR_NON_NULL(fringes->data, NULL); + PS_ASSERT_INT_POSITIVE(fringes->n, NULL); + if (x0 && y0) { + PS_ASSERT_VECTOR_NON_NULL(x0, NULL); + PS_ASSERT_VECTOR_NON_NULL(y0, NULL); + PS_ASSERT_VECTOR_TYPE(x0, PS_TYPE_S32, NULL); + PS_ASSERT_VECTOR_TYPE(y0, PS_TYPE_S32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(x0, y0, NULL); + PS_ASSERT_VECTOR_SIZE(x0, fringes->n, NULL); + PS_ASSERT_VECTOR_SIZE(y0, fringes->n, NULL); + } + + // Get the measurement parameters, and check they are consistent + int numPoints = 0; // Number of fringe points + int dX = 0, dY = 0; // Half-width and -height of fringe boxes + int nX = 0, nY = 0; // Smoothing scales + for (long i = 0; i < fringes->n; i++) { + pmFringeStats *fringe = fringes->data[i]; // The fringe of interest + pmFringeRegions *regions = fringe->regions; // The fringe regions + if (numPoints == 0) { + dX = regions->dX; + dY = regions->dY; + nX = regions->nX; + nY = regions->nY; + } else if (regions->dX != dX || regions->dY != dY || regions->nX != nX || regions->nY != nY) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Fringe %ld has different parameters (%d,%d,%d,%d) " + "from the first (%d,%d,%d,%d).\n", i, + regions->dX, regions->dY, regions->nX, regions->nY, dX, dY, nX, nY); + return NULL; + } + int num = regions->nRequested; // Number of fringe points + if (regions->x->n != num || regions->y->n != num || regions->mask->n != num || + fringe->f->n != num || fringe->df->n != num) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Length of region (%ld,%ld,%ld) and fringe vectors " + "do not match (%ld,%ld) with the official value (%d).\n", regions->x->n, regions->y->n, + regions->mask->n, fringe->f->n, fringe->df->n, num); + return NULL; + } + numPoints += regions->nRequested; + } + + pmFringeRegions *newRegions = pmFringeRegionsAlloc(numPoints, dX, dY, nX, nY); // The new list of regions + newRegions->x = psVectorAlloc(numPoints, PS_TYPE_F32); + newRegions->y = psVectorAlloc(numPoints, PS_TYPE_F32); + newRegions->mask = psVectorAlloc(numPoints, PS_TYPE_U8); + pmFringeStats *newStats = pmFringeStatsAlloc(newRegions); // The new list of statistics + + long offset = 0; // Offset from start of the list + for (long i = 0; i < fringes->n; i++) { + pmFringeStats *fringe = fringes->data[i]; // The fringe of interest + pmFringeRegions *regions = fringe->regions; // The fringe regions + // Copy the data over + memcpy(&newRegions->x->data.F32[offset], regions->x->data.F32, regions->x->n * sizeof(psF32)); + memcpy(&newRegions->y->data.F32[offset], regions->y->data.F32, regions->y->n * sizeof(psF32)); + memcpy(&newRegions->mask->data.U8[offset], regions->mask->data.U8, regions->mask->n * sizeof(psU8)); + memcpy(&newStats->f->data.F32[offset], fringe->f->data.F32, fringe->f->n * sizeof(psF32)); + memcpy(&newStats->df->data.F32[offset], fringe->f->data.F32, fringe->df->n * sizeof(psF32)); + if (x0 && y0) { + for (long j = offset; j < offset + regions->x->n; j++) { + newRegions->x->data.F32[j] += x0->data.S32[i]; + newRegions->y->data.F32[j] += y0->data.S32[i]; + } + } + offset += regions->nRequested; + } + + psFree(newRegions); // Drop reference + return newStats; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeIO +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +bool pmFringesFormat(pmCell *cell, psMetadata *header, const psArray *fringes) +{ + PS_ASSERT_PTR_NON_NULL(cell, false); + PS_ASSERT_ARRAY_NON_NULL(fringes, false); + + // Check the regions are all identical + pmFringeRegions *regions = ((pmFringeStats*)fringes->data[0])->regions; // First region + for (int i = 1; i < fringes->n; i++) { + pmFringeStats *stats = fringes->data[i]; + if (stats->regions != regions) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Regions for fringe statistics are not identical.\n"); + return false; + } + } + + // Ensure the region is legit + psVector *x = regions->x; // The x positions + psVector *y = regions->y; // The y positions + psVector *mask = regions->mask; // The region mask + int numRows = regions->nRequested; // Number of rows in the table + PS_ASSERT_INT_POSITIVE(numRows, false); + PS_ASSERT_VECTOR_NON_NULL(x, false); + PS_ASSERT_VECTOR_NON_NULL(y, false); + PS_ASSERT_VECTOR_TYPE(x, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_TYPE(y, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(x, (long)numRows, false); + PS_ASSERT_VECTOR_SIZE(y, (long)numRows, false); + if (mask) { + PS_ASSERT_VECTOR_NON_NULL(mask, false); + PS_ASSERT_VECTOR_TYPE(mask, PS_TYPE_U8, false); + PS_ASSERT_VECTOR_SIZE(mask, (long)numRows, false); + } + + // We need to write: + // Scalars: dX, dY, nX, nY + // Vectors: x, y, mask, f, df + + psMetadata *scalars = psMemIncrRefCounter(header); // Metadata to hold the scalars; will be the header + if (!scalars) { + scalars = psMetadataAlloc(); + } + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGDX", PS_META_REPLACE, "Median box half-width", + regions->dX); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGDY", PS_META_REPLACE, "Median box half-height", + regions->dY); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGNX", PS_META_REPLACE, "Large-scale smoothing in x", + regions->nX); + psMetadataAddS32(scalars, PS_LIST_TAIL, "PSFRNGNY", PS_META_REPLACE, "Large-scale smoothing in y", + regions->nY); + psMetadataAdd(cell->analysis, PS_LIST_TAIL, "FRINGE.HEADER", PS_DATA_METADATA, + "Header for fringe data", scalars); + psFree(scalars); + + + psArray *table = psArrayAlloc(numRows); // The table + // Translate the vectors into the required format for psFitsWriteTable() + for (long i = 0; i < numRows; i++) { + psMetadata *row = psMetadataAlloc(); + psMetadataAddF32(row, PS_LIST_TAIL, "x", PS_META_REPLACE, "Fringe position in x", x->data.F32[i]); + psMetadataAddF32(row, PS_LIST_TAIL, "y", PS_META_REPLACE, "Fringe position in y", y->data.F32[i]); + psU8 maskValue = 0; // Mask value + if (mask && mask->data.U8[i]) { + maskValue = 0xff; + } + + psVector *f = psVectorAlloc(fringes->n, PS_TYPE_F32); // Measurements for each fringe component + psVector *df = psVectorAlloc(fringes->n, PS_TYPE_F32); // Errors in measurements + for (long j = 0; j < fringes->n; j++) { + pmFringeStats *stats = fringes->data[j]; // Fringe statistics of interest + f->data.F32[j] = stats->f->data.F32[i]; + df->data.F32[j] = stats->df->data.F32[i]; + if (!isfinite(f->data.F32[j]) || !isfinite(df->data.F32[j])) { + maskValue = 0xff; + } + } + psMetadataAdd(row, PS_LIST_TAIL, "f", PS_DATA_VECTOR | PS_META_REPLACE, "Fringe measurements", f); + psMetadataAdd(row, PS_LIST_TAIL, "df", PS_DATA_VECTOR | PS_META_REPLACE, "Fringe errors", df); + // Drop references + psFree(f); + psFree(df); + + psMetadataAddU8(row, PS_LIST_TAIL, "mask", PS_META_REPLACE, "Mask", maskValue); + table->data[i] = row; + } + + psMetadataAdd(cell->analysis, PS_LIST_TAIL, "FRINGE", PS_DATA_ARRAY, "Fringe data", table); + + return true; +} + + +psArray *pmFringesParse(pmCell *cell) +{ + PS_ASSERT_PTR_NON_NULL(cell, NULL); + + bool mdok; // Status of MD lookup + psMetadata *header = psMetadataLookupMetadata(&mdok, cell->analysis, "FRINGE.HEADER"); // Header + if (!mdok || !header) { + psError(PS_ERR_UNKNOWN, false, "Unable to find header for fringe data.\n"); + return NULL; + } + + psArray *table = psMetadataLookupPtr(NULL, cell->analysis, "FRINGE"); // FITS table + if (!table) { + psError(PS_ERR_UNKNOWN, false, "Unable to find table for fringe data.\n"); + return NULL; + } + + + // Read the scalars from the header + #define READ_FRINGES_SCALAR(SCALAR, NAME) \ + int SCALAR = psMetadataLookupS32(&mdok, header, NAME); \ + if (!mdok || SCALAR <= 0) { \ + psError(PS_ERR_IO, true, "Unable to find " NAME " in fringe header.\n"); \ + return NULL; \ + } + + // Need to retrieve the scalars: dX, dY, nX, nY + READ_FRINGES_SCALAR(dX, "PSFRNGDX"); + READ_FRINGES_SCALAR(dY, "PSFRNGDY"); + READ_FRINGES_SCALAR(nX, "PSFRNGNX"); + READ_FRINGES_SCALAR(nY, "PSFRNGNY"); + + // Now the vectors: x, y, mask, f, df + long numRows = table->n; // Number of rows + pmFringeRegions *regions = pmFringeRegionsAlloc(numRows, dX, dY, nX, nY); // The fringe regions + psVector *x = psVectorAlloc(numRows, PS_TYPE_F32); // x position + psVector *y = psVectorAlloc(numRows, PS_TYPE_F32); // y position + psVector *mask = psVectorAlloc(numRows, PS_TYPE_U8); // mask + regions->x = x; + regions->y = y; + regions->mask = mask; + psArray *f = psArrayAlloc(numRows); // Array of fringe measurements + psArray *df = psArrayAlloc(numRows);// Array of errors + psArray *fringes = NULL; // Array of fringes, to return + + #define READ_FRINGES_VECTOR_ROW(VECTOR, TYPE, NAME, DESCRIPTION) \ + { \ + VECTOR->data.TYPE[i] = psMetadataLookup##TYPE(&mdok, row, NAME); \ + if (!mdok) { \ + psError(PS_ERR_IO, true, "Unable to find " #DESCRIPTION " for row %ld.\n", i); \ + goto READ_FRINGES_DONE; \ + } \ + } + + // Some values may be either a vector or a value --- need to check + #define READ_FRINGES_ARRAY_ROW(ARRAY, TYPE, NAME, DESCRIPTION) \ + { \ + psMetadataItem *item = psMetadataLookup(row, NAME); \ + if (!item) { \ + psError(PS_ERR_IO, true, "Unable to find " #DESCRIPTION " for row %ld.\n", i); \ + goto READ_FRINGES_DONE; \ + } \ + if (item->type == PS_DATA_VECTOR) { \ + ARRAY->data[i] = psMemIncrRefCounter(item->data.V); \ + } else if (item->type == PS_TYPE_##TYPE) { \ + psVector *vector = psVectorAlloc(1, PS_TYPE_##TYPE); \ + vector->data.TYPE[0] = item->data.TYPE; \ + ARRAY->data[i] = vector; \ + } else { \ + psError(PS_ERR_IO, true, "Found " #DESCRIPTION " for row %ld, but it's of an " \ + "unsupported type (%x).\n", i, item->type); \ + goto READ_FRINGES_DONE; \ + } \ + } + + // Translate the table into vectors + for (long i = 0; i < numRows; i++) { + psMetadata *row = table->data[i]; // Table row + READ_FRINGES_VECTOR_ROW(x, F32, "x", "x position"); + READ_FRINGES_VECTOR_ROW(y, F32, "y", "y position"); + READ_FRINGES_VECTOR_ROW(mask, U8, "mask", "mask"); + READ_FRINGES_ARRAY_ROW(f, F32, "f", "fringe measurement"); + READ_FRINGES_ARRAY_ROW(df, F32, "df", "fringe error"); + } + + // Get f,df into pmFringeStats + long numFringes = ((psVector*)(f->data[0]))->n; // Number of fringe components + fringes = psArrayAlloc(numFringes); + for (int j = 0; j < numFringes; j++) { + fringes->data[j] = pmFringeStatsAlloc(regions); + } + + for (long i = 0; i < numRows; i++) { + psVector *measurements = f->data[i]; // Vector of measurements + psVector *errors = df->data[i]; // Vector of errors + for (int j = 0; j < numFringes; j++) { + pmFringeStats *fringe = fringes->data[j]; + fringe->f->data.F32[i] = measurements->data.F32[j]; + fringe->df->data.F32[i] = errors->data.F32[j]; + } + } + +READ_FRINGES_DONE: + psFree(regions); + psFree(f); + psFree(df); + + return fringes; +} + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeScale +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +static void fringeScaleFree(pmFringeScale *scale) +{ + psFree(scale->coeff); + psFree(scale->coeffErr); + return; +} + +pmFringeScale *pmFringeScaleAlloc(int nFringeFrames) +{ + pmFringeScale *scale = psAlloc(sizeof(pmFringeScale)); + (void)psMemSetDeallocator(scale, (psFreeFunc)fringeScaleFree); + + scale->nFringeFrames = nFringeFrames; + scale->coeff = psVectorAlloc(nFringeFrames + 1, PS_TYPE_F32); + scale->coeffErr = psVectorAlloc(nFringeFrames + 1, PS_TYPE_F32); + + return scale; +} + +// Determine the fringe scales through solving the least-squares problem +static bool scaleMeasure(pmFringeScale *scale, // Scale to return + pmFringeStats *science, // The fringe measurements for the science image + psArray *fringes // Array of fringe measurements for the templates + ) +{ + assert(scale); + assert(science); + assert(fringes); + assert(scale->nFringeFrames == fringes->n); + + psVector *mask = science->regions->mask; // The region mask + + int numCoeffs = fringes->n + 1; // Number of coefficients: scales for the templates plus a background + int numPoints = science->regions->nRequested; // Number of points (i.e., fringe measurements) + + psImage *A = psImageAlloc(numCoeffs, numCoeffs, PS_TYPE_F64); // The least-squares matrix + psVector *B = psVectorAlloc(numCoeffs, PS_TYPE_F64); // The least-squares vector + + // Generate the least-squares matrix and vector + for (int i = 0; i < numCoeffs; i++) { + psVector *fringe1 = NULL; // A fringe measurement + if (i != 0) { + pmFringeStats *fringe = fringes->data[i - 1]; + fringe1 = fringe->f; + } + + // Fill in the upper part of the matrix + for (int j = i; j < numCoeffs; j++) { + psVector *fringe2 = NULL; // Another fringe measurement + if (j != 0) { + pmFringeStats *fringe = fringes->data[j - 1]; + fringe2 = fringe->f; + } + + double matrix = 0.0; // The matrix sum + for (int k = 0; k < numPoints; k++) { + if (!mask->data.U8[k]) { + psF32 f1 = (fringe1) ? fringe1->data.F32[k] : 1.0; // Contribution from i fringe + psF32 f2 = (fringe2) ? fringe2->data.F32[k] : 1.0; // Contribution from j fringe + psF32 dsInv = science->df->data.F32[k]; // 1 / sigma + matrix += f1 * f2 * dsInv * dsInv; + } + } + A->data.F64[i][j] = matrix; + } + + // Use symmetry to fill in the lower part of the matrix + for (int j = 0; j < i; j++) { + A->data.F64[i][j] = A->data.F64[j][i]; + } + + double vector = 0.0; // The vector sum + for (int k = 0; k < numPoints; k++) { + if (!mask->data.U8[k]) { + psF32 f1 = (fringe1) ? fringe1->data.F32[k] : 1.0; // Contribution from fringe 1 + psF32 s = science->f->data.F32[k]; // Contribution from science measurement + psF32 dsInv = science->df->data.F32[k]; // 1 / sigma + vector += f1 * s * dsInv * dsInv; + } + } + B->data.F64[i] = vector; + } + + if (psTraceGetLevel("psModules.detrend") >= 5) { + printf("From %d points:\n", numPoints); + for (int i = 0; i < numCoeffs; i++) { + for (int j = 0; j < numCoeffs; j++) { + printf("%.2e ", A->data.F64[i][j]); + } + printf("\n"); + } + } + + // Solve the least-squares equation + if (! psMatrixGJSolve(A, B)) { + psError(PS_ERR_UNKNOWN, false, "Could not solve linear equations. Returning NULL.\n"); + return false; + } + + // Copy the results over + for (int i = 0; i < numCoeffs; i++) { + scale->coeff->data.F32[i] = B->data.F64[i]; + scale->coeffErr->data.F32[i] = sqrt(A->data.F64[i][i]); + } + + psFree(A); + psFree(B); + + return true; +} + +// Measure the fringe differences for each region +static bool fringeScaleDiffs(psVector *diff, // Vector of differences + pmFringeStats *science, // Science fringe measurements + psArray *fringes, // Template fringe measurements + pmFringeScale *scale // Fringe scales + ) +{ + assert(diff); + assert(diff->type.type == PS_TYPE_F32); + assert(science); + assert(fringes); + assert(scale); + assert(diff->n == science->regions->nRequested); + assert(fringes->n == scale->nFringeFrames); + + psVector *mask = science->regions->mask; // The region mask + + for (int i = 0; i < diff->n; i++) { + if (!mask->data.U8[i]) { + float difference = science->f->data.F32[i] - scale->coeff->data.F32[0]; + for (int j = 0; j < fringes->n; j++) { + pmFringeStats *fringe = fringes->data[j]; // The fringe of interest + difference -= scale->coeff->data.F32[j + 1] * fringe->f->data.F32[i]; + } + diff->data.F32[i] = difference * difference * science->df->data.F32[i] * science->df->data.F32[i]; + } + } + + return true; +} + +// Clip regions based on the differences; return the number masked +static int clipRegions(psVector *diffs, // Differences + psVector *mask, // Region mask + float rej // Rejection limit in standard deviations + ) +{ + assert(diffs); + assert(diffs->type.type == PS_TYPE_F32); + assert(mask); + assert(mask->type.type == PS_TYPE_U8); + assert(diffs->n == mask->n); + + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_QUARTILE); // Statistics + psVectorStats(stats, diffs, NULL, mask, 1); + float middle = stats->sampleMedian; // The middle of the distribution + float thresh = rej * 0.74 * (stats->sampleUQ - stats->sampleLQ); // The rejection threshold + psFree(stats); + + int numClipped = 0; // Number clipped + for (int i = 0; i < diffs->n; i++) { + psTrace("psModules.detrend", 10, "Region %d (%d): %f\n", i, mask->data.U8[i], diffs->data.F32[i]); + if (!mask->data.U8[i] && fabs(diffs->data.F32[i]) > middle + thresh) { + psTrace("psModules.detrend", 5, "Masking %d: %f\n", i, diffs->data.F32[i]); + mask->data.U8[i] = 1; + numClipped++; + } + } + + return numClipped; +} + + +// XXX include the fringe error (fringe->df) in the fit? +pmFringeScale *pmFringeScaleMeasure(pmFringeStats *science, psArray *fringes, float rej, + unsigned int nIter, float keepFrac) +{ + PS_ASSERT_PTR_NON_NULL(science, NULL); + PS_ASSERT_PTR_NON_NULL(fringes, NULL); + PS_ASSERT_INT_POSITIVE(fringes->n, NULL); + PS_ASSERT_INT_POSITIVE(nIter, NULL); + + pmFringeRegions *regions = science->regions; // The fringe regions + int numRegions = regions->nRequested; // Number of regions + + // Ensure we are dealing with the SAME fringe points for all the inputs. + // Otherwise, we're going to get crazy results. + for (long i = 0; i < numRegions; i++) { + float xScience = regions->x->data.F32[i]; // The x position for the science image + float yScience = regions->y->data.F32[i]; // The y position for the science image + for (long j = 0; j < fringes->n; j++) { + pmFringeStats *fringe = fringes->data[j]; // The fringe statistics from a fringe image + pmFringeRegions *fringeRegions = fringe->regions; // The fringe regions for that fringe image + if (fringeRegions->x->data.F32[i] != xScience || + fringeRegions->y->data.F32[i] != yScience) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Science and fringe measurement regions " + "don't match.\n"); + return NULL; + } + } + } + + // Set up the mask + if (!regions->mask) { + regions->mask = psVectorAlloc(numRegions, PS_TYPE_U8); + psVectorInit(regions->mask, 0); + } + psVector *mask = regions->mask; // The region mask + psStats *median = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); // Median statistics + unsigned int numClipped = 0; // Total number clipped + psVector *diff = psVectorAlloc(numRegions, PS_TYPE_F32); // The differences between obs. and pred. + + pmFringeScale *scale = pmFringeScaleAlloc(fringes->n); // The fringe scales + + // Get rid of bad data points + for (int i = 0; i < fringes->n; i++) { + pmFringeStats *fringe = fringes->data[i]; // The fringe of interest + for (int j = 0; j < numRegions; j++) { + if (!finite(fringe->f->data.F32[j])) { + mask->data.U8[j] = 1; + psTrace("psModules.detrend", 9, "Masking region %d because not finite in fringe %d.\n", j, i); + } + } + } + + // Get rid of the extreme outliers by assuming most of the points are somewhat clustered + psVectorStats(median, science->f, NULL, NULL, 0); + scale->coeff->data.F32[0] = median->sampleMedian; + for (int i = 0; i < fringes->n; i++) { + pmFringeStats *fringe = fringes->data[i]; // The fringe of interest + psVectorStats(median, fringe->f, NULL, NULL, 0); + scale->coeff->data.F32[0] -= median->sampleMedian; + scale->coeff->data.F32[i] = 0.0; + } + psFree(median); + fringeScaleDiffs(diff, science, fringes, scale); + numClipped = clipRegions(diff, mask, 3.0*rej); + psTrace("psModules.detrend", 4, "%d regions clipped in initial pass.\n", numClipped); + + unsigned int iter = 0; // Iteration number + unsigned int iterClip = 0; // Number clipped in this iteration + do { + iter++; + scaleMeasure(scale, science, fringes); // The scales + psTrace("psModules.detrend", 1, "Fringe scales after iteration %d:\n", iter); + psTrace("psModules.detrend", 1, "Background: %f %f\n", scale->coeff->data.F32[0], + scale->coeffErr->data.F32[0]); + for (int i = 0; i < scale->nFringeFrames; i++) { + psTrace("psModules.detrend", 1, "%d: %f %f\n", i, scale->coeff->data.F32[i + 1], + scale->coeffErr->data.F32[i + 1]); + } + + fringeScaleDiffs(diff, science, fringes, scale); + iterClip = clipRegions(diff, mask, rej); // Number clipped + numClipped += iterClip; + psTrace("psModules.detrend", 9, "Clipped: %d\tFrac: %f\n", iterClip, + (float)numClipped/(float)numRegions); + } while (iterClip > 0 && iter < nIter && (float)numClipped/(float)numRegions <= 1.0 - keepFrac); + psFree(diff); + + // A final iteration with the last clipping + scaleMeasure(scale, science, fringes); + + return scale; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Fringe correction +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// XXX note that this modifies the input fringe images +psImage *pmFringeCorrect(pmReadout *readout, pmFringeRegions *fringes, psArray *fringeImages, + psArray *fringeStats, psMaskType maskVal, float rej, + unsigned int nIter, float keepFrac) +{ + PS_ASSERT_PTR_NON_NULL(readout, NULL); + PS_ASSERT_PTR_NON_NULL(readout->image, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(readout->image, NULL); + PS_ASSERT_PTR_NON_NULL(fringes, NULL); + PS_ASSERT_PTR_NON_NULL(fringeImages, NULL); + PS_ASSERT_PTR_NON_NULL(fringeStats, NULL); + PS_ASSERT_INT_EQUAL(fringeImages->n, fringeStats->n, NULL); + PS_ASSERT_INT_POSITIVE(nIter, NULL); + + // measure the fringe stats for the science frame and solve for the scales + pmFringeStats *scienceStats = pmFringeStatsMeasure(fringes, readout, maskVal); + + if (psTraceGetLevel("psModules.detrend") > 9) { + for (int i = 0; i < fringes->nRequested; i++) { + printf("%f", scienceStats->f->data.F32[i]); + for (int j = 0; j < fringeStats->n; j++) { + pmFringeStats *fringe = fringeStats->data[j]; + printf("\t%f", fringe->f->data.F32[i]); + } + printf("\n"); + } + } + + pmFringeScale *scale = pmFringeScaleMeasure(scienceStats, fringeStats, rej, nIter, keepFrac); + psFree(scienceStats); + + psTrace("psModules.detrend", 7, "Fringe solution:\n"); + for (int i = 0; i < fringeImages->n + 1; i++) { + psTrace("psModules.detrend", 7, "%d: %f %f\n", i, scale->coeff->data.F32[i], + scale->coeffErr->data.F32[i]); + } + + // build the fringe correction image + // XXX we could save data space by making the first image the output image + psImage *sumFringe = psImageAlloc(readout->image->numCols, readout->image->numRows, PS_TYPE_F32); + //psBinaryOp(sumFringe, sumFringe, "+", psScalarAlloc(scale->coeff->data.F32[0], PS_TYPE_F32)); + for (int i = 0; i < fringeImages->n; i++) { + + // rescale the fringe image + psBinaryOp(fringeImages->data[i], fringeImages->data[i], "*", + psScalarAlloc(scale->coeff->data.F32[i+1], PS_TYPE_F32)); + + // sum together + sumFringe = (psImage*)psBinaryOp(sumFringe, sumFringe, "+", fringeImages->data[i]); + } + psFree(scale); + + // subtract the resulting fringe frame + readout->image = (psImage*)psBinaryOp(readout->image, readout->image, "-", sumFringe); + + return sumFringe; +} + Index: /branches/rel-1-1/psModules/src/detrend/pmFringeStats.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmFringeStats.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmFringeStats.h (revision 12167) @@ -0,0 +1,214 @@ +/* @file pmFringeStats.h + * @brief Measure fringe statistics, and apply correction + * + * @author Eugene Magnier, IfA + * @author Paul Price, IfA + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_FRINGE_STATS +#define PM_FRINGE_STATS + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeRegions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/// Fringe measurement regions. +/// +/// Fringes are measured within a box of size dX,dY. A large scale smoothing is performed by subtracting the +/// background within large divisions of the image. The coordinates of the fringe points and the mask may be +/// NULL, which means that they will be generated when required. +typedef struct +{ + int nRequested; // Number of fringe points selected + int nAccepted; // Number of fringe points not masked + int dX; // Median box half-width + int dY; // Median box half-height + int nX; // Number of large-scale smoothing divisions in x (col) + int nY; // Number of large-scale smoothing divisions in y (row) + psVector *x; // Fringe point coordinates (col), or NULL + psVector *y; // Fringe point coordinates (row), or NULL + psVector *mask; // Fringe point on/off mask, or NULL +} +pmFringeRegions; + +/// Allocate fringe regions +pmFringeRegions *pmFringeRegionsAlloc (int nPts, ///< Number of fringe points to create + int dX, ///< Half-width of fringe boxes + int dY, ///< Half-height of fringe boxes + int nX, ///< Smoothing scale in x + int nY ///< Smoothing scale in y + ); + +/// Generate the fringe points +/// +/// Fringe points are generated randomly over the image. No effort is made to avoid masked regions (indeed, +/// the function knows nothing about masks). If the random number generator is NULL, then a new one will be +/// used. +bool pmFringeRegionsCreatePoints(pmFringeRegions *fringe, ///< Fringe regions to generate + const psImage *image, ///< Image for the regions (defines the size) + psRandom *random ///< Random number generator, or NULL + ); + +/// Write the regions to a FITS file +/// +/// The fringe regions are written to the FITS file, with the given extension name. The header is +/// supplemented with scalar values dX, dY, nX and nY (as PSFRNGDX, PSFRNGDY, PSFRNGNX, PSFRNGNY) from the +/// fringe regions, while the fringe coordinates and mask are written as a FITS table (as x, y, mask). +bool pmFringeRegionsWriteFits(psFits *fits, ///< Output FITS file + psMetadata *header, ///< Additional headers to write, or NULL + const pmFringeRegions *regions, ///< Regions to write + const char *extname ///< Extension name, or NULL + ); + +/// Read the regions from a FITS file +/// +/// The fringe regions are read from the FITS file, at the given extension name. The scalars are retrieved +/// from the header, while the table provides the fringe coordinates and mask. +pmFringeRegions *pmFringeRegionsReadFits(psMetadata *header, ///< Header to read, or NULL + const psFits *fits, ///< Input FITS file + const char *extname ///< Extension name, or NULL + ); + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeStats +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/// Fringe measurements for a particular image +/// +/// Measurements of the median and stdev are made at each of the fringe regions. +typedef struct +{ + pmFringeRegions *regions; ///< Fringe regions + psVector *f; ///< Fringe point median + psVector *df; ///< Fringe point stdev +} +pmFringeStats; + +/// Allocate fringe statistics +pmFringeStats *pmFringeStatsAlloc(pmFringeRegions *regions // The fringe regions which will be measured + ); + +/// Measure the fringe statistics for an image +/// +/// Given an input image and fringe regions at which to measure, measures the median and stdev at each of the +/// fringe points. If the fringe points are undefined, they are generated. +pmFringeStats *pmFringeStatsMeasure(pmFringeRegions *fringe, ///< Fringe regions at which to measure + const pmReadout *readout, ///< Readout for which to measure + psMaskType maskVal ///< Mask value for image + ); + +/// Write the fringe stats for an image to a FITS table +/// +/// The fringe measurements are written to the FITS file with the given extension name. The median and stdev +/// measurements are written as a FITS table (as f and df). +bool pmFringeStatsWriteFits(psFits *fits, ///< FITS file to which to write + psMetadata *header, ///< Additional headers to write, or NULL + const pmFringeStats *fringe, ///< Fringe statistics to be written + const char *extname ///< Extension name for table + ); + +/// Read the fringe stats for an image from a FITS table +/// +/// The fringe measurements are read from the FITS file, at the given extension name. The table provides the +/// median and stdev measurements. It is assumed that the fringe measurements correspond to the regions +/// provided. +pmFringeStats *pmFringeStatsReadFits(psMetadata *header, ///< Header to read, or NULL + const psFits *fits, ///< FITS file from which to read + const char *extname, ///< Extension name to read + pmFringeRegions *regions ///< Corresponding regions + ); + +/// Concatenate the fringe stats for several readouts into a single fringe stats. +/// +/// Each readout of each chip must be measured separately (so as to avoid any gaps between the cells, as in +/// the case for GPC). But the fit must be performed with all the readouts belonging to a chip (in order to +/// get a secure measurement of the fringe amplitudes). To do so, we need to concatenate the fringe +/// measurements for each of the chip components. This function generates a new pmFringeStats from +/// concatenating those in the array. The corresponding pmFringeRegions is also generated. +pmFringeStats *pmFringeStatsConcatenate(const psArray *fringes, ///< Array of pmFringeStats for the readouts + const psVector *x0, ///< Offset in x for the readout + const psVector *y0 ///< Offset in y for the readout + ); + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Input/output for multiple pmFringeStats +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/// Write an array of fringes measurements to a FITS table. +/// +/// Writes an array of fringe measurements for a cell as a FITS table in the analysis metadata. The array of +/// fringe statistics must all use the same fringe regions (or there is no point in storing them all +/// together). The header is supplemented with scalar values dX, dY, nX and nY (as PSFRNGDX, PSFRNGDY, +/// PSFRNGNX, PSFRNGNY) from the fringe regions, while the fringe coordinates and mask are written as a FITS +/// table (as x, y, mask, f, df; f and df are vectors). +bool pmFringesFormat(pmCell *cell, ///< Cell for which to write + psMetadata *header, ///< Header, or NULL + const psArray *fringes ///< Array of pmFringeStats, all for the same pmFringeRegion + ); + +/// Parses an array of fringes measurements from a FITS table. +/// +/// The fringes for the cell are read from the FITS table in the analysis metadata. The table provides the +/// region and the (possibly multiple) fringe statistics for that region. The current extension is used if +/// the extension name is not provided. +psArray *pmFringesParse(pmCell *cell ///< Cell for which to read fringes + ); + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// pmFringeScale +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/// The fringe correction solution +typedef struct +{ + int nFringeFrames; ///< Number of fringe frames + psVector *coeff; ///< Fringe coefficients; size = nFringeFrames + psVector *coeffErr; ///< Error in fringe coefficients; size = nFringeFrames +} +pmFringeScale; + +/// Measure the scales for the fringe correction +/// +/// Given a fringe measurement for a science image, and an array of template fringe measurements, this +/// function measures the contribution of each of the templates to the input. Rejection is performed on the +/// fringe regions, to weed out stars etc. +pmFringeScale *pmFringeScaleMeasure(pmFringeStats *science, ///< Fringe measurements from science image + psArray *fringes, ///< Array of fringe measurements from templates + float rej, ///< Rejection threshold (in standard deviations) + unsigned int nIter, ///< Maximum number of iterations + float keepFrac ///< Minimum fraction of regions to keep + ); + +/// Allocate fringe scales +pmFringeScale *pmFringeScaleAlloc(int nFringeFrames ///< Number of fringe frames + ); + + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Fringe correction +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/// Solve for and apply the fringe correction +/// +/// This is a wrapper around each of the fringe correction components to measure the fringe points, solve for +/// the fringe correction, and apply the fringe correction. The input fringe images are modified (scaled by +/// the solution coefficients in order to correct the science image). Returns the summed fringe image. +psImage *pmFringeCorrect(pmReadout *in, ///< Input science image + pmFringeRegions *fringes, ///< The fringe regions used + psArray *fringeImages, ///< Fringe template images to use in correction + psArray *fringeStats, ///< Fringe stats (for templates) to use in correction + psMaskType maskVal, ///< Value to mask for science image + float rej, ///< Rejection threshold, for pmFringeScaleMeasure + unsigned int nIter, ///< Maximum number of iterations, for pmFringeScaleMeasure + float keepFrac ///< Minimum fraction of regions to keep, for pmFringeScaleMeasure + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.c (revision 12167) @@ -0,0 +1,233 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDUUtils.h" +#include "pmFPAMaskWeight.h" +#include "pmMaskBadPixels.h" + +bool pmMaskBadPixels(pmReadout *input, const pmReadout *mask, psMaskType maskVal) +{ + PS_ASSERT_PTR_NON_NULL(input, false); + PS_ASSERT_PTR_NON_NULL(input->mask, false); + PS_ASSERT_IMAGE_TYPE(input->mask, PS_TYPE_MASK, false); + + PS_ASSERT_PTR_NON_NULL(mask, false); + PS_ASSERT_PTR_NON_NULL(mask->mask, false); + PS_ASSERT_IMAGE_TYPE(mask->mask, PS_TYPE_MASK, false); + + psImage *inMask = input->mask; + psImage *exMask = mask->mask; + + // Add mask MD5 to header + pmHDU *hdu = pmHDUFromReadout(input); // HDU of interest + psVector *md5 = psImageMD5(mask->mask); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "MASK image MD5: "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + md5string, ""); + psFree(md5string); + + int rowMax = input->row0 + inMask->numRows; + int colMax = input->col0 + inMask->numCols; + + if (mask->row0 > input->row0 || mask->col0 > input->col0 || + mask->row0 + exMask->numRows < rowMax || mask->col0 + exMask->numCols < colMax) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Input image size exceeds that of mask image: (%d, %d) vs (%d, %d)", + inMask->numRows, inMask->numCols, exMask->numRows, exMask->numCols); + return false; + } + + // Determine total offset based on image offset with chip offset + // XXX if we choose to correct for the readout location, apply input->col0,row0 here + int offCol = input->col0 - mask->col0; + int offRow = input->row0 - mask->row0; + + // masks are both of type PS_TYPE_MASK + psMaskType **exVal = exMask->data.U8; + psMaskType **inVal = inMask->data.U8; + + // apply exMask values + if (maskVal) { + // set raised pixels in exMask which are selected by maskVal + for (int j = 0; j < inMask->numRows; j++) { + int xJ = j - offRow; + for (int i = 0; i < inMask->numCols; i++) { + int xI = i - offCol; + inVal[j][i] |= (maskVal & exVal[xJ][xI]); + } + } + } else { + // set raised pixels in exMask which are selected by maskVal + for (int j = 0; j < inMask->numRows; j++) { + int xJ = j - offRow; + for (int i = 0; i < inMask->numCols; i++) { + int xI = i - offCol; + if (exVal[xJ][xI] == 0) { + inVal[j][i] |= PM_MASK_BAD; + } + } + } + } + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now, used for reporting + psString timeString = psTimeToISO(time); // String with time + psFree(time); + psStringPrepend(&timeString, "Static mask applied at "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + timeString, ""); + psFree(timeString); + + return true; +} + + +psImage *pmMaskFlagSuspectPixels(psImage *out, const pmReadout *readout, float rej, + psMaskType maskVal, float frac, psRandom *rng) +{ + PS_ASSERT_PTR_NON_NULL(readout, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(rej, 0.0, NULL); + PS_ASSERT_FLOAT_WITHIN_RANGE(frac, 0.0, 1.0, NULL); + PS_ASSERT_IMAGE_NON_NULL(readout->image, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(readout->image, NULL); + PS_ASSERT_IMAGE_TYPE(readout->image, PS_TYPE_F32, NULL); + if (readout->mask) { + PS_ASSERT_IMAGE_NON_EMPTY(readout->mask, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(readout->image, readout->mask, NULL); + PS_ASSERT_IMAGE_TYPE(readout->mask, PS_TYPE_MASK, NULL); + } + if (out) { + PS_ASSERT_IMAGE_NON_EMPTY(out, NULL); + PS_ASSERT_IMAGE_TYPE(out, PS_TYPE_S32, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(readout->image, out, NULL); + } + + psImage *image = readout->image; // Image of interest + psImage *mask = readout->mask; // Corresponding mask + + if (rng) { + psMemIncrRefCounter(rng); + } else { + rng = psRandomAlloc(PS_RANDOM_TAUS, 0); + } + + // XXX note that this now will accept any of several stats options + psStats *stats = psStatsAlloc(PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV); + stats->nSubsample = frac * image->numCols * image->numRows; + if (!psImageBackground(stats, image, mask, maskVal, rng) || + !isfinite(stats->robustMedian) || !isfinite(stats->robustUQ) || !isfinite(stats->robustLQ)) { + psError(PS_ERR_UNKNOWN, false, "Unable to measure image statistics.\n"); + psFree(stats); + psFree(rng); + return NULL; + } + psFree(rng); + + float median = stats->robustMedian; // Median value + float stdev = stats->robustStdev; // Estimate of the standard deviation + psFree(stats); + + if (!out) { + out = psImageAlloc(image->numCols, image->numRows, PS_TYPE_S32); + psImageInit(out, 0); + } + + for (int y = 0; y < image->numRows; y++) { + for (int x = 0; x < image->numCols; x++) { + if (fabs((image->data.F32[y][x] - median) / stdev) >= rej && + (!mask || !(mask->data.PS_TYPE_MASK_DATA[y][x] & maskVal))) { + out->data.S32[y][x]++; + } + } + } + + return out; +} + + +psImage *pmMaskIdentifyBadPixels(const psImage *suspects, float thresh, psMaskType maskVal) +{ + PS_ASSERT_IMAGE_NON_NULL(suspects, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(suspects, NULL); + PS_ASSERT_IMAGE_TYPE(suspects, PS_TYPE_S32, NULL); + + float limit = NAN; // Limit for masking + if (thresh > 0) { + psStats *stats = psStatsAlloc(PS_STAT_CLIPPED_STDEV); // Statistics + stats->clipSigma = 5.0; + stats->clipIter = 1; + if (!psImageStats(stats, suspects, NULL, 0) || !isfinite(stats->clippedStdev)) { + psError(PS_ERR_UNKNOWN, false, "Unable to perform statistics.\n"); + psFree(stats); + return NULL; + } + limit = thresh * stats->clippedStdev; + psFree(stats); + } else if (thresh < 0) { + psStats *stats = psStatsAlloc(PS_STAT_MAX); // Statistics + if (!psImageStats(stats, suspects, NULL, 0)) { + psError(PS_ERR_UNKNOWN, false, "Unable to perform statistics.\n"); + psFree(stats); + return NULL; + } + psHistogram *histo = psHistogramAlloc(-0.5, stats->max + 0.5, stats->max + 1); + psFree(stats); + if (!psImageHistogram(histo, suspects, NULL, 0)) { + psError(PS_ERR_UNKNOWN, false, "Unable to generate histogram.\n"); + psFree(histo); + return NULL; + } + + // Find the mode. Since this is a Poisson distribution (more or less), this should also be the mean + // and variance. + int max = 0; // Index of the mode + for (int i = 0; i < histo->nums->n; i++) { + if (histo->nums->data.F32[i] > histo->nums->data.F32[max]) { + max = i; + } + } + + // Since the mode is most likely zero, we add one to get something realistic. Then "thresh" is + // negative, so we subtract instead of add. + limit = max + 1.0 - thresh * sqrtf((float)max + 1.0); + + } else { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Threshold (%f) must be a positive or negative real number.\n", thresh); + return NULL; + } + + psImage *badpix = psImageAlloc(suspects->numCols, suspects->numRows, PS_TYPE_MASK); // Bad pixel mask + psImageInit(badpix, 0); + + if (psTraceGetLevel("psModules.detrend") > 9) { + psStats *stats = psStatsAlloc(PS_STAT_MIN | PS_STAT_MAX); // Statistics + psImageStats(stats, suspects, NULL, 0); + psHistogram *histo = psHistogramAlloc(-0.5, stats->max + 0.5, stats->max + 1); + psImageHistogram(histo, suspects, NULL, 0); + for (int i = 0; i < histo->nums->n; i++) { + printf("%f --> %f : %f\n", histo->bounds->data.F32[i], histo->bounds->data.F32[i + 1], + histo->nums->data.F32[i]); + } + psFree(stats); + psFree(histo); + printf("Threshold: %f\n", limit); + } + + for (int y = 0; y < suspects->numRows; y++) { + for (int x = 0; x < suspects->numCols; x++) { + if (suspects->data.S32[y][x] >= limit) { + badpix->data.PS_TYPE_MASK_DATA[y][x] = maskVal; + } + } + } + + return badpix; +} Index: /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmMaskBadPixels.h (revision 12167) @@ -0,0 +1,58 @@ +/* @file pmMaskBadPixels.h + * @brief Mask bad pixels + * + * @author Ross Harman, MHPCC + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_MASK_BAD_PIXELS_H +#define PM_MASK_BAD_PIXELS_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include +#include "pmFPA.h" + +/// Applies the bad pixel mask to the input +/// +/// Pixels marked as bad within the mask are marked as bad within the input image's mask. If maskVal is +/// non-zero, all pixels in the mask have any of the same bits sets as maskVal shall have the corresponding +/// bits raised. If maskVal is zero, any zero pixels in the mask are OR-ed with PM_MASK_BAD. Position +/// offsets (such as due to trimming) between the input and mask are applied so that the same pixels are +/// referred to. The science readout must already have a supplied mask element (use eg. pmReadoutSetMask). +/// The supplied mask image must be of MASK type +bool pmMaskBadPixels(pmReadout *input, ///< Input science image + const pmReadout *mask, ///< Mask image to apply + psMaskType maskVal ///< Mask value to apply + ); + +/// Find pixels outlying from the background, flagging suspect pixels +/// +/// Pixels more than "rej" standard deviations from the background level (in flat-fielded, +/// background-subtracted images) have the corresponding pixel in the "suspect pixels" image incremented. +/// After accumulating over a suitable sample of images, bad pixels should have a high value in the suspect +/// pixels image, allowing them to be identified. The suspect pixels image is of type S32. +psImage *pmMaskFlagSuspectPixels(psImage *out, ///< Suspected bad pixels image, or NULL + const pmReadout *readout, ///< Readout to inspect + float rej, ///< Rejection threshold (standard deviations) + psMaskType maskVal, ///< Mask value for statistics + float frac, ///< Fraction of pixels to consider + psRandom *rng ///< Random number generator + ); + +/// Identify bad pixels from the suspect pixels image +/// +/// Bad pixels are identified from the suspect pixels image (accumulated over a large number of images). +/// Pixels marked as suspect in more than "thresh" standard deviations from the mean are identified as bad +/// pixels (output image). If "thresh" is negative, a Poisson is assumed. +psImage *pmMaskIdentifyBadPixels(const psImage *suspects, ///< Accumulated suspect pixels image + float thresh, ///< Threshold for bad pixel (standard deviations) + psMaskType maskVal ///< Value to set for bad pixels + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmNonLinear.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmNonLinear.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmNonLinear.c (revision 12167) @@ -0,0 +1,90 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include + +#include "pmFPA.h" +#include "pmNonLinear.h" + +pmReadout *pmNonLinearityPolynomial(pmReadout *inputReadout, const psPolynomial1D *input1DPoly) +{ + PS_ASSERT_PTR_NON_NULL(inputReadout, NULL); + PS_ASSERT_PTR_NON_NULL(inputReadout->image, NULL); + PS_ASSERT_IMAGE_TYPE(inputReadout->image, PS_TYPE_F32, NULL); + PS_ASSERT_PTR_NON_NULL(input1DPoly, NULL); + + psImage *image = inputReadout->image; // Image to correct + for (int i = 0; i < image->numRows; i++) { + for (int j = 0; j < image->numCols; j++) { + image->data.F32[i][j] = psPolynomial1DEval(input1DPoly, image->data.F32[i][j]); + } + } + return inputReadout; +} + + +pmReadout *pmNonLinearityLookup(pmReadout *inputReadout, const psVector *inFlux, const psVector *outFlux) +{ + PS_ASSERT_PTR_NON_NULL(inputReadout, NULL); + PS_ASSERT_PTR_NON_NULL(inputReadout->image, NULL); + PS_ASSERT_IMAGE_TYPE(inputReadout->image, PS_TYPE_F32, NULL); + PS_ASSERT_PTR_NON_NULL(inFlux, NULL); + if (inFlux->n < 2) { + psError(PS_ERR_UNKNOWN, true, + "pmNonLinearityLookup(): input vector less than 2 elements. Returning inputReadout image."); + return(inputReadout); + } + PS_ASSERT_PTR_NON_NULL(outFlux,NULL); + psS32 tableSize = inFlux->n; + if (inFlux->n != outFlux->n) { + tableSize = PS_MIN(inFlux->n, outFlux->n); + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmNonLinear.c: pmNonLinearityLookup(): " + "input vectors have different sizes (%ld, %ld)\n", + inFlux->n, outFlux->n); + } + PS_ASSERT_VECTOR_TYPE(inFlux, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(outFlux, PS_TYPE_F32, NULL); + + psImage *image = inputReadout->image; // Input image + psScalar x; // Value at pixel, for p_psVectorBinDisect + x.type.type = PS_TYPE_F32; + int numPixels = 0; // Number of pixels outside the range + + for (int i = 0; i < image->numRows; i++) { + for (int j = 0; j < image->numCols; j++) { + x.data.F32 = image->data.F32[i][j]; + int binNum = p_psVectorBinDisect((psVector *)inFlux, &x); // Bin below the value + + if (binNum == -2) { + // We get here if x is below the table lookup range. + image->data.F32[i][j] = outFlux->data.F32[0]; + numPixels++; + } else if (binNum == -1) { + // We get here if x is above the table lookup range. + image->data.F32[i][j] = outFlux->data.F32[tableSize-1]; + numPixels++; + } else if (binNum < -2) { + // We get here if there was some other problem. + psError(PS_ERR_UNKNOWN, true, + "pmNonLinearityLookup(): Could not perform p_psVectorBinDisect(). " + "Returning inputReadout image."); + return inputReadout; + numPixels++; + } else { + // Perform linear interpolation. + float slope = (outFlux->data.F32[binNum + 1] - outFlux->data.F32[binNum]) / + (inFlux->data.F32[binNum + 1] - inFlux->data.F32[binNum]); + image->data.F32[i][j] = outFlux->data.F32[binNum] + + (x.data.F32 - inFlux->data.F32[binNum]) * slope; + } + } + } + if (numPixels > 0) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmNonLinear.c: pmNonLinearityLookup(): %d pixels outside table.", numPixels); + } + return inputReadout; +} Index: /branches/rel-1-1/psModules/src/detrend/pmNonLinear.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmNonLinear.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmNonLinear.h (revision 12167) @@ -0,0 +1,38 @@ +/* @file pmNonLinear.h + * @brief Perform non-linear correction through polynomial or table lookup + * + * @author George Gusciora, MHPCC + * @author Paul Price, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_NON_LINEAR_H +#define PM_NON_LINEAR_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include +#include "pmFPA.h" + +/// Correct non-linearity through polynomial +/// +/// Applies a polynomial to the flux of each pixel in the input image to determine the corrected flux. +pmReadout *pmNonLinearityPolynomial(pmReadout *in, ///< Input image, to correct + const psPolynomial1D *coeff ///< Polynomial for non-linearity correction + ); + +/// Correct non-linearity through table lookup +/// +/// For each pixel in the input image, performs linear interpolation on the table (from the two vectors) to +/// determine the corrected flux. +pmReadout *pmNonLinearityLookup(pmReadout *in, ///< Input image, to correct + const psVector *inFlux, ///< Table column with input fluxes + const psVector *outFlux ///< Table column with output fluxes + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmShifts.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmShifts.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmShifts.c (revision 12167) @@ -0,0 +1,341 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPALevel.h" +#include "pmFPAUtils.h" +#include "pmShifts.h" + +#define HASH_SIZE 100 // Size of hash with cells; should be > numCells for efficiency +#define SHIFTS_BUFFER 100 // Buffer size for shifts +#define ANALYSIS_NAME "OT.KERNEL" // Name for kernel on the analysis metadata +#define TRACE "psModules.detrend" // Trace facility + +// XXX To do: +// * Make the table column names configurable, by having a SHIFTS metadata in the camera format, with entries +// specifying the column names. + + +// Shifts due to orthogonal transfer +typedef struct { + psVector *x; // Shifts in x + psVector *y; // Shifts in y + psVector *t; // Times of shifts + long num; // Number of values +} otShifts; + +// Allocator for otShifts +static otShifts *otShiftsAlloc(void) +{ + otShifts *shifts = psAlloc(sizeof(otShifts)); + shifts->x = psVectorAllocEmpty(SHIFTS_BUFFER, PS_TYPE_S32); + shifts->y = psVectorAllocEmpty(SHIFTS_BUFFER, PS_TYPE_S32); + shifts->t = psVectorAllocEmpty(SHIFTS_BUFFER, PS_TYPE_F32); + shifts->num = 0; + return shifts; +} + +// Look up the cell within a hash; supplement the hash with a new value if it doesn't exist +static otShifts *cellVectors(psHash *shifts, // Hash of shifts + const char *cellName // Key for hash + ) +{ + assert(shifts); + assert(cellName); + + // Find the appropriate cell + otShifts *vectors = psHashLookup(shifts, cellName); + if (!vectors) { + vectors = otShiftsAlloc(); + psHashAdd(shifts, cellName, vectors); + psFree(vectors); // Drop reference + } + return vectors; +} + +// Generate a kernel and stuff it on the cell metadata +static bool stuffKernel(pmCell *cell, // Cell to which the shifts belong + const otShifts *shifts // Shifts to apply + ) +{ + assert(cell); + assert(shifts); + + psKernel *kernel = psKernelGenerate(shifts->t, shifts->x, shifts->y, false, true); // Shift kernel + if (!kernel) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to generate kernel from OT shifts"); + return false; + } + psMetadataAddPtr(cell->analysis, PS_LIST_TAIL, ANALYSIS_NAME, PS_DATA_KERNEL, + "Orthogonal transfer kernel, calculated from shifts", kernel); + psFree(kernel); + + return true; +} + + +bool pmShiftsRead(pmCell *cell, psFits *fits) +{ + PS_ASSERT_PTR_NON_NULL(fits, false); + PS_ASSERT_PTR_NON_NULL(cell, false); + + bool mdok; // Status of MD lookup + psKernel *check = psMetadataLookupPtr(&mdok, cell->analysis, ANALYSIS_NAME); // Kernel, or NULL + if (check) { + psTrace(TRACE, 2, "Cell already has OT kernel present.\n"); + return true; // No error + } + psTrace(TRACE, 2, "Reading FITS file for OT kernels.\n"); + + pmChip *chip = cell->parent; // The parent chip + pmFPA *fpa = chip->parent; // The parent FPA + pmHDU *phu = NULL; // The primary header + pmFPALevel phuLevel = PM_FPA_LEVEL_NONE; // Level of the PHU + long numChips = 0; // Number of chips below the PHU; for setting efficient hash size + long numCells = 0; // Number of cells below the PHU; for setting efficient hash size + if (fpa->hdu) { + phu = fpa->hdu; + // Count the cells + psArray *chips = fpa->chips; // Array of chips + numChips = chips->n; + for (int i = 0; i < chips->n; i++) { + pmChip *chip = chips->data[i]; // Chip of interest + numCells += chip->cells->n; + } + numCells = (float)numCells / (float)numChips + 0.5; // Average number of cells per chip + phuLevel = PM_FPA_LEVEL_FPA; + } + if (!phu && chip->hdu) { + phu = chip->hdu; + numChips = 1; + numCells = chip->cells->n; + phuLevel = PM_FPA_LEVEL_CHIP; + } + if (!phu && cell->hdu) { + phu = cell->hdu; + numChips = 0; + numCells = 1; + phuLevel = PM_FPA_LEVEL_CELL; + } + + if (!phu || phuLevel == PM_FPA_LEVEL_NONE) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Can't find the PHU.\n"); + return false; + } + + // Find out what to read + psMetadata *fileInfo = psMetadataLookupMetadata(&mdok, phu->format, "FILE"); // FILE in the format + if (!mdok || !fileInfo) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find FILE information in camera format.\n"); + return false; + } + const char *shiftsExt = psMetadataLookupStr(&mdok, fileInfo, "SHIFTS"); // Name of shifts extension + if (!mdok || !shiftsExt) { + // We read all the shifts that are present --- which is none. + return true; + } + + // Read the FITS file + int origExt = psFitsGetExtNum(fits); // Original extension number; to preserve position + if (!psFitsMoveExtName(fits, shiftsExt)) { + psError(PS_ERR_IO, false, "Unable to move to shifts extension %s", shiftsExt); + return false; + } + psArray *table = psFitsReadTable(fits); // The table of shifts + if (!table) { + psError(PS_ERR_IO, false, "Unable to read shifts table.\n"); + return false; + } + + // More sensible storage + otShifts *singleShifts = NULL; // Shifts for a single cell + psHash *multipleShifts = NULL; // Shifts for multiple cells, stored by cell name + switch (phuLevel) { + case PM_FPA_LEVEL_FPA: + multipleShifts = psHashAlloc(2 * numChips); + break; + case PM_FPA_LEVEL_CHIP: + multipleShifts = psHashAlloc(2 * numCells); + break; + case PM_FPA_LEVEL_CELL: + singleShifts = otShiftsAlloc(); + break; + default: + psAbort("Should never get here.\n"); + } + + // Pull values out of the table into something a bit more sensible + for (int i = 0; i < table->n; i++) { + psMetadata *row = table->data[i]; // The row of interest + + const char *chipName; // Name of chip + if (phuLevel == PM_FPA_LEVEL_FPA) { + // Only care about the chip name if there's more than one chip + chipName = psMetadataLookupStr(&mdok, row, "Chip"); + if (!mdok || !chipName) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find Chip in row %d of shifts table\n", i); + psFree(multipleShifts); + psFree(table); + return false; + } + } + const char *cellName; // Name of cell + if (phuLevel <= PM_FPA_LEVEL_CHIP) { + // Only care about the cell name if there's a chip + cellName = psMetadataLookupStr(&mdok, row, "Cell"); + if (!mdok || !cellName) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find Cell in row %d of shifts table\n", i); + psFree(multipleShifts); + psFree(table); + return false; + } + } + float x = psMetadataLookupS32(&mdok, row, "X"); // Shift in x + if (!mdok) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find X in row %d of shifts table\n", i); + psFree(multipleShifts); + psFree(table); + return false; + } + float y = psMetadataLookupF32(&mdok, row, "Y"); // Shift in y + if (!mdok) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find Y in row %d of shifts table\n", i); + psFree(multipleShifts); + psFree(table); + return false; + } + float t = psMetadataLookupF32(&mdok, row, "Time"); // Time of shift + if (!mdok) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Unable to find Time in row %d of shifts table\n", i); + psFree(multipleShifts); + psFree(table); + return false; + } + + otShifts *shifts = NULL; // Shifts for the cell of interest + switch (phuLevel) { + case PM_FPA_LEVEL_FPA: { + psHash *cells = psHashLookup(multipleShifts, chipName); // Hash of cells + if (!cells) { + cells = psHashAlloc(numCells); + psHashAdd(multipleShifts, chipName, cells); + psFree(cells); // Drop reference + } + shifts = cellVectors(cells, cellName); + break; + } + case PM_FPA_LEVEL_CHIP: + shifts = cellVectors(multipleShifts, cellName); + break; + case PM_FPA_LEVEL_CELL: + shifts = singleShifts; + break; + default: + psAbort("Should never get here.\n"); + } + + // Add the shift + psVectorExtend(shifts->x, 1, SHIFTS_BUFFER); + psVectorExtend(shifts->y, 1, SHIFTS_BUFFER); + psVectorExtend(shifts->t, 1, SHIFTS_BUFFER); + shifts->x->data.S32[shifts->num] = (int)x; + shifts->y->data.S32[shifts->num] = (int)y; + shifts->t->data.F32[shifts->num] = t; + shifts->num++; + } + psFree(table); + + // Put the kernels into their own cells + if (phuLevel == PM_FPA_LEVEL_CELL) { + // Only a single cell + if (!stuffKernel(cell, singleShifts)) { + psFree(singleShifts); + return false; + } + psFree(singleShifts); + } else { + psList *names = psHashKeyList(multipleShifts); // List of hash keys (chip/cell names) + psListIterator *namesIter = psListIteratorAlloc(names, PS_LIST_HEAD, false); // Iterator for names + const char *name; // Name, from iteration + while ((name = psListGetAndIncrement(namesIter))) { + switch (phuLevel) { + case PM_FPA_LEVEL_FPA: { + int chipNum = pmFPAFindChip(fpa, name); // Number of chip of interest + if (chipNum < 0) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find chip %s", name); + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + return false; + } + pmChip *chip = fpa->chips->data[chipNum]; // Chip of interest + + // Loop over component cells + psHash *cells = psHashLookup(multipleShifts, name); // Hash of cells + psList *cellNames = psHashKeyList(multipleShifts); // List of hash keys (cell names) + psListIterator *cellNamesIter = psListIteratorAlloc(cellNames, PS_LIST_HEAD, false); + const char *cellName; // Cell name, from iteration + while ((cellName = psListGetAndIncrement(cellNamesIter))) { + int cellNum = pmChipFindCell(chip, cellName); // Number of cell of interest + if (!cell) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find cell %s", cellName); + psFree(cellNamesIter); + psFree(cellNames); + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + return false; + } + pmCell *cell = chip->cells->data[cellNum]; // Cell of interest + + otShifts *vectors = psHashLookup(cells, cellName); // Shifts for the cell of interest + if (!stuffKernel(cell, vectors)) { + psFree(cellNamesIter); + psFree(cellNames); + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + return false; + } + } + psFree(cellNamesIter); + psFree(cellNames); + break; + } + case PM_FPA_LEVEL_CHIP: { + int cellNum = pmChipFindCell(chip, name); // Number of cell of interest + if (!cell) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find cell %s", name); + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + return false; + } + pmCell *cell = chip->cells->data[cellNum]; // Cell of interest + + otShifts *vectors = psHashLookup(multipleShifts, name); // Shifts for this cell + if (!stuffKernel(cell, vectors)) { + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + return false; + } + break; + } + default: + psAbort("Should never get here.\n"); + } + } + psFree(namesIter); + psFree(names); + psFree(multipleShifts); + } + + // Go back to the original position in the FITS file + return psFitsMoveExtNum(fits, origExt, false); +} Index: /branches/rel-1-1/psModules/src/detrend/pmShifts.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmShifts.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmShifts.h (revision 12167) @@ -0,0 +1,22 @@ +#ifndef PM_SHIFTS_H +#define PM_SHIFTS_H + +#include +#include "pmFPA.h" + +/// Read orthogonal transfer shifts table for a cell +/// +/// Given a cell, this function searches for the orthogonal transfer shifts for this cell in the supplied FITS +/// file. The FITS extension containing the shifts table is specified by the SHIFTS keyword within the FILE +/// information in the camera format. If the extension is found, the shifts table is read and translated into +/// kernels which are placed in the analysis metadata of each cell. Note that this operation is performed on +/// all cells within the FITS file (or at least, those contained within the shifts table), not just the cell +/// provided --- if we have to read the whole table, we may as well translate the whole lot. If a kernel is +/// already present in the cell analysis metadata, the function returns true without doing any work. +bool pmShiftsRead(pmCell *cell, ///< Cell for which to search for shifts + psFits *fits ///< FITS file in which to search for OT shifts extension + ); + + + +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.c (revision 12167) @@ -0,0 +1,675 @@ +#if HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDUUtils.h" +#include "psVectorBracket.h" +#include "pmShutterCorrection.h" + +/// Measure shutter correction: +/// +/// input : collection of shutter correction exposures (pre-processed) +/// output : a shutter correction image +/// +/// The measurement could be performed on any focal-plane unit at a time. for GPC, the obvious scale is to +/// measure the effect on the entire focal plane at once, with a single reference point in the field. this is +/// a little more complex than just measuring the effect for a single 2D image array. the reference point and +/// the detailed analysis points need to be defined for the entire hierarchy rather than just as coordinate +/// pairs or regions. a pmFPAview would be a natural element with which to define these points, but at the +/// moment, the pmFPAview structure defines a band in the CCD, not a coordinate. An option is to instead +/// specify the reference locations as a pmFPAview coupled with a psRegion, though we need to be careful not +/// to over-specify the pixels (ie, conflict between pmFPAview and psRegion). +/// +/// At each point in an image with exposure time T, we measure f(k;T) = F(k;T) / F(0;T) where k is the +/// coordinate of the point of interest, 0 is the reference coordinate, and F(k;T) is the measured number of +/// counts at the point of interest in this image. given a collection of f(k;T) values, we need to determine +/// the model f(k;T) = A(k) (T + dTk) / (T + dTo) where dTk is the shutter error at the given position, dTo is +/// the shutter error at the reference position, and A(k) is the scaling factor for the given position. +/// +/// The process for generating a shutter correction is as follows: +/// - for each image +/// -- measure the reference point counts +/// - for each analysis region: +/// -- measure shutter parameters (dTo, dTk, A): +/// --- for each image: +/// ---- measure counts at the region +/// ---- divide by the reference counts +/// --- linear extrapolation to find f(inf) = A(k) +/// --- linear extrapolation to find f(0) = A(k) dTk / dTo +/// --- linear interpolation to find coordinate where f(dTo) = A (1 + dTk/dTo) / 2 +/// --- non-linear fit of T, f(T) to f(k;T) = A(k) (T + dTk) / (T + dTo) +/// - use the collection of dTo values to choose a best value for dTo (median) +/// - for each image pixel +/// -- divide by the reference counts +/// -- generate the vectors T, f(T) +/// -- linear fit of T, f(T) to f(k;T) = A(k) (T + dTk) / (T + dTo) using dTo above +/// -- save dTk, A(k) in output image pixels +/// -- apply dTk, A(k) to measure residual images +/// -- generate residual FITS/JPEG images + + +static void pmShutterCorrectionFree(pmShutterCorrection *pars) +{ + // Nothing to free + return; +} + +pmShutterCorrection *pmShutterCorrectionAlloc() +{ + pmShutterCorrection *corr = (pmShutterCorrection*)psAlloc(sizeof(pmShutterCorrection)); + psMemSetDeallocator(corr, (psFreeFunc)pmShutterCorrectionFree); + + corr->scale = 0.0; + corr->offset = 0.0; + corr->offref = 0.0; + + return corr; +} + +pmShutterCorrection *pmShutterCorrectionGuess(const psVector *exptime, const psVector *counts) +{ + // NOTE: vectors must be sorted on input. It is expensive to sort or check this here, but + // it is easy to arrange by sorting the images before generating these vectors. + + PS_ASSERT_VECTOR_NON_NULL(exptime, NULL); + PS_ASSERT_VECTOR_NON_NULL(counts, NULL); + PS_ASSERT_VECTOR_TYPE(exptime, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(counts, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(exptime, counts, NULL); + if (exptime->n <= 2) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Require more than 2 exposures to guess shutter correction.\n"); + return NULL; + } + + long N = exptime->n; // Number of exposures + + // use interpolation to guess shutter correction parameters given a set of exposures times and normalized + // counts (divided by the reference counts for each image) + + pmShutterCorrection *corr = pmShutterCorrectionAlloc(); // Shutter correction, to be returned + psPolynomial1D *line = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 1); // Straight line, for extrapolation + + // choose the highest exptime point as the guess for the scale: + // XXX we could examine the top 2 or 3 values and decide if we + // extended exptime enough or median clip. + corr->scale = counts->data.F32[N-1]; + + // fit a line to the lowest three points and extrapolate to 0.0 + psVector *tmpX = psVectorAlloc(2, PS_TYPE_F32); + psVector *tmpY = psVectorAlloc(2, PS_TYPE_F32); + + long index; + for (index = 0; !isfinite(exptime->data.F32[index]) && index < N - 1; index++) + ; // Iterate only + if (index == N - 1) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Not enough good values to guess shutter correction.\n"); + goto GUESS_ERROR; + } + tmpX->data.F32[0] = exptime->data.F32[index]; + tmpY->data.F32[0] = counts->data.F32[index]; + + for (index++; + (!isfinite(exptime->data.F32[index]) || exptime->data.F32[index] == exptime->data.F32[0]) && + index < N; index++) + ; // Iterate only + if (index == N) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, + "Exposure times are all identical --- cannot guess shutter correction.\n"); + goto GUESS_ERROR; + } + tmpY->data.F32[1] = counts->data.F32[index]; + tmpX->data.F32[1] = exptime->data.F32[index]; + + // fit a line and extrapolate the fit to 0.0 + if (!psVectorFitPolynomial1D(line, NULL, 0, tmpY, NULL, tmpX)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to fit for the time offset.\n"); + goto GUESS_ERROR; + } + float ratio = psPolynomial1DEval(line, 0.0) / corr->scale; + + // XXX we need a sanity check: + // if the mean value of the three points is higher than corr->scale, + // then the slope should be negative. + // if the mean value of the three points is lower than corr->scale, + // then the slope should be positive. + + // find two points bracketing the value counts = A (1 + dTk/dTo) / 2 = corr->scale (1 + ratio) / 2 + float value = corr->scale * (1 + ratio) / 2.0; + + int Np; // Index of the value above (positive side) + if (ratio < 1.0) { + Np = psVectorBracket(counts, value, true); + } else { + Np = psVectorBracketDescend(counts, value, true); + } + int Nm = (Np == 0) ? 1 : Np - 1; // Index of the value below (negative side) + + tmpX->data.F32[0] = counts->data.F32[Nm]; + tmpX->data.F32[1] = counts->data.F32[Np]; + tmpY->data.F32[0] = exptime->data.F32[Nm]; + tmpY->data.F32[1] = exptime->data.F32[Np]; + + // fit a line and extrapolate the fit to counts = A (1 + dTk/dTo) : exptime = dTo + if (!psVectorFitPolynomial1D (line, NULL, 0, tmpY, NULL, tmpX)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to fit for the reference offset.\n"); + goto GUESS_ERROR; + } + corr->offref = psPolynomial1DEval(line, value); + corr->offset = ratio * corr->offref; + + psFree(line); + psFree(tmpX); + psFree(tmpY); + + return corr; + +GUESS_ERROR: + psFree(tmpX); + psFree(tmpY); + psFree(line); + psFree(corr); + return NULL; +} + +// linear fit to the counts and exptime, given a value for offref +pmShutterCorrection *pmShutterCorrectionLinFit(const psVector *exptime, + const psVector *counts, + const psVector *cntError, + const psVector *mask, + float offref, + int nIter, + float rej, + psMaskType maskVal + ) +{ + PS_ASSERT_VECTOR_NON_NULL(exptime, NULL); + PS_ASSERT_VECTOR_NON_NULL(counts, NULL); + PS_ASSERT_VECTOR_TYPE(exptime, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(counts, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(exptime, counts, NULL); + if (exptime->n <= 2) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Require more than 2 exposures to guess shutter correction.\n"); + return NULL; + } + if (cntError) { + PS_ASSERT_VECTOR_TYPE(cntError, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(counts, cntError, NULL); + } + PS_ASSERT_FLOAT_LARGER_THAN(offref, 0.0, NULL); + + // this step is identical for all pixels: do it once and save? + psVector *x = psVectorAlloc(exptime->n, PS_TYPE_F32); + psVector *y = psVectorAlloc(exptime->n, PS_TYPE_F32); + + for (long i = 0; i < exptime->n; i++) { + // Should be safe (if expensive) to stick NaNs in --- the fitter deals with them + float value = 1.0 / (exptime->data.F32[i] + offref); + x->data.F32[i] = exptime->data.F32[i] * value; + y->data.F32[i] = value; + } + + psPolynomial2D *line = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, 1, 1); + + // mask out the terms we will not fit + line->mask[0][0] = 1; + line->mask[1][1] = 1; + line->coeff[0][0] = 0; + line->coeff[1][1] = 0; + + // the stats structure determines how the clipping statistic is measured + // too few points to use the robust analysis method + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN | PS_STAT_SAMPLE_STDEV); + stats->clipSigma = rej; + stats->clipIter = nIter; + + if (!psVectorClipFitPolynomial2D(line, stats, mask, maskVal, counts, cntError, x, y)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to fit shutter correction.\n"); + psFree(stats); + psFree(x); + psFree(y); + psFree(line); + return NULL; + } + psFree(stats); + + pmShutterCorrection *corr = pmShutterCorrectionAlloc(); + corr->offref = offref; + corr->scale = line->coeff[1][0]; + corr->offset = line->coeff[0][1] / line->coeff[1][0]; + + psFree(x); + psFree(y); + psFree(line); + + return corr; +} + +static psF32 pmShutterCorrectionModel(psVector *deriv, + const psVector *params, + const psVector *x) +{ + // This is in a tight loop, so we won't assert here. + + psF32 A = params->data.F32[0]; + psF32 p = x->data.F32[0] + params->data.F32[1]; + psF32 q = 1.0 / (x->data.F32[0] + params->data.F32[2]); + psF32 f = A * p * q; + + if (deriv) { + deriv->data.F32[0] = p * q; + deriv->data.F32[1] = A * q; + deriv->data.F32[2] = - f * q; + } + return f; +} + +// non-linear fit to the counts and exptime, given a guess for the three parameters +pmShutterCorrection *pmShutterCorrectionFullFit(const psVector *exptime, + const psVector *counts, + const psVector *cntError, + const pmShutterCorrection *guess + ) +{ + PS_ASSERT_VECTOR_NON_NULL(exptime, NULL); + PS_ASSERT_VECTOR_NON_NULL(counts, NULL); + PS_ASSERT_VECTOR_TYPE(exptime, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(counts, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(exptime, counts, NULL); + if (exptime->n <= 2) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Require more than 2 exposures to guess shutter correction.\n"); + return NULL; + } + if (cntError) { + PS_ASSERT_VECTOR_TYPE(cntError, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(counts, cntError, NULL); + } + PS_ASSERT_PTR_NON_NULL(guess, NULL); + + psMinimization *minInfo = psMinimizationAlloc(15, 0.1); // Minimization information + + psVector *params = psVectorAlloc (3, PS_TYPE_F32); // Fitting parameters + params->data.F32[0] = guess->scale; + params->data.F32[1] = guess->offset; + params->data.F32[2] = guess->offref; + + // XXX for the moment, don't set any constraints + // psMinConstraint *constraint = psMinConstraintAlloc(); + // constrain->checkLimits = pmShutterParamLimits; + // constrain->paramMask = NULL; + psMinConstraint *constraint = NULL; // Constraints on the minimization + + // XXX ignore covariance matrix for the moment + // psImage *covar = psImageAlloc (params->n, params->n, PS_TYPE_F64); + psImage *covar = NULL; // Covariance matrix + + // construct the coordinate and value entries (y is counts) + psArray *x = psArrayAlloc(exptime->n); // Coordinates + + for (long i = 0; i < exptime->n; i++) { + psVector *coord = psVectorAlloc(1, PS_TYPE_F32); + coord->data.F32[0] = exptime->data.F32[i]; + x->data[i] = coord; + } + + if (!psMinimizeLMChi2(minInfo, covar, params, constraint, x, counts, cntError, pmShutterCorrectionModel)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to fit for shutter correction.\n"); + psFree(x); + psFree(minInfo); + psFree(params); + return NULL; + } + + pmShutterCorrection *corr = pmShutterCorrectionAlloc(); // Shutter correction + corr->scale = params->data.F32[0]; + corr->offset = params->data.F32[1]; + corr->offref = params->data.F32[2]; + + psFree(minInfo); + psFree(params); + psFree(x); + + return corr; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +#define MEASURE_SAMPLES 4 + +psImage *pmShutterCorrectionMeasure(const psArray *readouts, int size, psStatsOptions meanStat, + psStatsOptions stdevStat, int nIter, float rej, psMaskType maskVal) +{ + PS_ASSERT_ARRAY_NON_NULL(readouts, NULL); + PS_ASSERT_ARRAY_NON_EMPTY(readouts, NULL); + PS_ASSERT_INT_POSITIVE(size, NULL); + + long num = readouts->n; // Number of readouts + PS_ASSERT_INT_POSITIVE(nIter, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(rej, 0.0, NULL); + + psArray *images = psArrayAlloc(num);// Array of images + psArray *masks = NULL; // Array of masks + psArray *weights = NULL; // Array of weights + psVector *exptimes = psVectorAlloc(num, PS_TYPE_F32); // Vector of exposure times + + { + pmReadout *readout = readouts->data[0]; // Representative readout + if (readout->mask) + { + masks = psArrayAlloc(num); + } + if (readout->weight) + { + weights = psArrayAlloc(num); + } + } + + // Check input sizes, generate first-pass statistics + psRegion refRegion; // Reference region + psVector *refs = psVectorAlloc(num, PS_TYPE_F32); // Reference measurements + psVectorInit(refs, 0); + psArray *regions = psArrayAlloc(MEASURE_SAMPLES); // Array of sample regions, made on each image + psImage *samplesMean = psImageAlloc(num, MEASURE_SAMPLES, PS_TYPE_F32); // Measurements for each file + psImage *samplesStdev = psImageAlloc(num, MEASURE_SAMPLES, PS_TYPE_F32); // Errors for each file + psStats *stats = psStatsAlloc(meanStat | stdevStat); + int numRows = 0, numCols = 0; // Size of images + for (long i = 0; i < images->n; i++) { + pmReadout *readout = readouts->data[i]; // Readout of interest + if (!readout) { + continue; + } + + bool mdok; // Status of MD lookup + float exptime = psMetadataLookupF32(&mdok, readout->parent->concepts, "CELL.EXPOSURE"); // Exp. time + if (!mdok || !isfinite(exptime)) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Exposure time for readout %ld is not set.\n", i); + goto MEASURE_ERROR; + } + exptimes->data.F32[i] = exptime; + + psImage *image = readout->image; // Image of interest + if (!image) { + continue; + } + images->data[i] = psMemIncrRefCounter(image); + if (image->type.type != PS_TYPE_F32) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Bad type for image: %x\n", image->type.type); + goto MEASURE_ERROR; + } + if (numRows == 0 || numCols == 0) { + numRows = image->numRows; + numCols = image->numCols; + // Set up the sample regions + refRegion = psRegionForSquare(0.5 * numCols, 0.5 * numRows, size); + for (int j = 0; j < MEASURE_SAMPLES; j++) { + int x = (j % 2) ? size : image->numCols - size; + int y = (j > 1) ? size : image->numRows - size; + psRegion region = psRegionForSquare(x, y, size); + region = psRegionForImage(image, region); + regions->data[j] = psRegionAlloc(region.x0, region.x1, region.y0, region.y1); + } + } else if (numRows != image->numRows || numCols != image->numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Image sizes don't match: %dx%d vs %dx%d\n", image->numCols, image->numRows, + numCols, numRows); + goto MEASURE_ERROR; + } + psImage *mask = readout->mask; // Mask of interest + if (mask) { + if (!masks) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Not all readouts have masks.\n"); + goto MEASURE_ERROR; + } + masks->data[i] = psMemIncrRefCounter(mask); + + if (mask->type.type != PS_TYPE_U8) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Bad type for mask: %x\n", mask->type.type); + goto MEASURE_ERROR; + } + if (mask->numRows != numRows || mask->numCols != numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Mask sizes don't match: %dx%d vs %dx%d\n", mask->numCols, mask->numRows, + numCols, numRows); + goto MEASURE_ERROR; + } + } else if (masks) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Not all readouts have masks.\n"); + goto MEASURE_ERROR; + } + + psImage *weight = readout->weight; // Weight map of interest + if (weight) { + if (!weights) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Not all readouts have weights.\n"); + goto MEASURE_ERROR; + } + weights->data[i] = psMemIncrRefCounter(weight); + + if (weight->type.type != PS_TYPE_F32) { + psError(PS_ERR_BAD_PARAMETER_TYPE, true, "Bad type for weights: %x\n", weight->type.type); + goto MEASURE_ERROR; + } + if (weight->numRows != numRows || weight->numCols != numCols) { + psError(PS_ERR_BAD_PARAMETER_SIZE, true, + "Weight sizes don't match: %dx%d vs %dx%d\n", weight->numCols, weight->numRows, + numCols, numRows); + goto MEASURE_ERROR; + } + } else if (weights) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Not all readouts have weights.\n"); + goto MEASURE_ERROR; + } + + + // Measure statistics + if (!psImageStats(stats, image, mask, maskVal)) { + psWarning("Unable to measure reference statistics.\n"); + } + refs->data.F32[i] = psStatsGetValue(stats, meanStat); + psTrace("psModules.detrend", 3, "Reference value for image %ld = %f\n", i, refs->data.F32[i]); + if (refs->data.F32[i] <= 0.0) { + psError(PS_ERR_UNKNOWN, true, "Measured non-positive reference value.\n"); + goto MEASURE_ERROR; + } + refs->data.F32[i] = 1.0 / refs->data.F32[i]; + for (int j = 0; j < MEASURE_SAMPLES; j++) { + psRegion *region = regions->data[j]; // Region of interest + psImage *subImage = psImageSubset(image, *region); // Sub-image + psImage *subMask = NULL; + if (mask) { + subMask = psImageSubset(mask, *region); + } + if (!psImageStats(stats, subImage, subMask, maskVal)) { + psString regionString = psRegionToString(*region); + psWarning("Unable to measure sample statistics at %s in image %ld.\n", + regionString, i); + psFree(regionString); + } + psFree(subImage); + samplesMean->data.F32[j][i] = psStatsGetValue(stats, meanStat) * refs->data.F32[i]; + samplesStdev->data.F32[j][i] = psStatsGetValue(stats, stdevStat) * refs->data.F32[i]; + psTrace("psModules.detrend", 5, "Image %ld, sample %d: %f +/- %f\n", i, j, + samplesMean->data.F32[j][i], samplesStdev->data.F32[j][i]); + } + } + psFree(regions); + psFree(stats); + + float meanRef = 0.0; // Mean reference offset + int numGood = 0; // Number of good measurements + psVector *counts = psVectorAlloc(num, PS_TYPE_F32); // Mean for each image + psVector *errors = psVectorAlloc(num, PS_TYPE_F32); // Stdev for each image + for (int i = 0; i < MEASURE_SAMPLES; i++) { + counts = psImageRow(counts, samplesMean, i); + errors = psImageRow(errors, samplesStdev, i); + pmShutterCorrection *guess = pmShutterCorrectionGuess(exptimes, counts); // Guess at correction + pmShutterCorrection *corr = pmShutterCorrectionFullFit(exptimes, counts, errors, guess); // Correct'n + if (!corr) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to measure shutter reference correction.\n"); + psFree(guess); + psFree(counts); + psFree(errors); + goto MEASURE_ERROR; + } + psTrace("psModules.detrend", 5, "Sample reference value: %f\n", corr->offref); + if (isfinite(corr->offref)) { + meanRef += corr->offref; + numGood++; + } + psFree(corr); + psFree(guess); + } + psFree(samplesMean); + psFree(samplesStdev); + + if (numGood == 0) { + psError(PS_ERR_UNKNOWN, true, "Unable to measure mean reference offset.\n"); + psFree(counts); + psFree(errors); + goto MEASURE_ERROR; + } + meanRef /= (float)numGood; + psTrace("psModules.detrend", 3, "Mean reference value: %f\n", meanRef); + + // Check the weights + if (weights && nIter > 1) { + for (int i = 0; i < weights->n && nIter > 1; i++) { + psImage *weight = weights->data[i]; // Weight image + if (!weight) { + // We don't have weights, so no realistic errors: turn off iteration + if (nIter > 0) { + psWarning("Not all images have weights --- turning iteration off.\n"); + } + nIter = 1; + } + } + } + + psImage *shutter = psImageAlloc(numCols, numRows, PS_TYPE_F32); // Shutter correction image + psImage *pattern = psImageAlloc(numCols, numRows, PS_TYPE_F32); // Illumination pattern + psVector *mask = psVectorAlloc(num, PS_TYPE_U8); // Mask for each image + psVectorInit(mask, 0); + psTrace("psModules.detrend", 2, "Performing linear fit on individual pixels...\n"); + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + for (int i = 0; i < num; i++) { + psImage *image = images->data[i]; // Image of interest + counts->data.F32[i] = image->data.F32[y][x] * refs->data.F32[i]; + psImage *maskImage; // Mask image + if (masks && (maskImage = masks->data[i])) { + mask->data.U8[i] = maskImage->data.U8[y][x]; + } + psImage *weight; // Weight image + if (weights && (weight = weights->data[i])) { + errors->data.F32[i] = sqrtf(weight->data.F32[y][x]) * refs->data.F32[i]; + } else { + errors->data.F32[i] = sqrtf(image->data.F32[y][x]) * refs->data.F32[i]; + } + } + + pmShutterCorrection *corr = pmShutterCorrectionLinFit(exptimes, counts, errors, mask, meanRef, + nIter, rej, maskVal); + shutter->data.F32[y][x] = corr->offset; + pattern->data.F32[y][x] = corr->scale; + psFree(corr); + } + } + psFree(mask); + psFree(counts); + psFree(errors); + psFree(refs); + + psFits *fits = psFitsOpen("pattern.fits", "w"); + psFitsWriteImage(fits, NULL, pattern, 0, NULL); + psFitsClose(fits); + psFree(pattern); + + return shutter; + + +MEASURE_ERROR: + // Clean up after error + psFree(exptimes); + psFree(images); + psFree(masks); + psFree(weights); + psFree(refs); + psFree(regions); + psFree(stats); + psFree(samplesMean); + psFree(samplesStdev); + return NULL; +} + + +bool pmShutterCorrectionApply(pmReadout *readout, const pmReadout *shutter) +{ + PS_ASSERT_PTR_NON_NULL(readout, false); + PS_ASSERT_PTR_NON_NULL(shutter, false); + PS_ASSERT_IMAGE_NON_NULL(readout->image, false); + PS_ASSERT_IMAGE_NON_NULL(shutter->image, false); + PS_ASSERT_IMAGE_TYPE(readout->image, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_TYPE(shutter->image, PS_TYPE_F32, false); + + psRegion region = psRegionSet(readout->col0, readout->col0 + readout->image->numCols, + readout->row0, readout->row0 + readout->image->numRows); // Detector region + + pmCell *cell = readout->parent; // Parent cell + if (!cell) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Parent cell is NULL --- unable to determine exposure time.\n"); + return false; + } + float exptime = psMetadataLookupF32(NULL, cell->concepts, "CELL.EXPOSURE"); // Exposure time + if (!isfinite(exptime) || exptime < 0.0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Bad exposure time: %f.\n", exptime); + return false; + } + + pmHDU *hdu = pmHDUFromCell(cell);// HDU of interest + + psVector *md5 = psImageMD5(shutter->image); // md5 hash + psString md5string = psMD5toString(md5); // String + psFree(md5); + psStringPrepend(&md5string, "Shutter image MD5: "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, md5string, ""); + psFree(md5string); + + + psImage *shutterImage = psImageSubset(shutter->image, region); // Subimage with shutter + if (!shutterImage) { + psString regionString = psRegionToString(region); + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Size mismatch: %s vs %dx%d\n", + regionString, shutter->image->numCols, shutter->image->numRows); + psFree(regionString); + psFree(shutterImage); + return false; + } + psImage *image = readout->image; // Image to correct + for (int y = 0; y < image->numRows; y++) { + for (int x = 0; x < image->numCols; x++) { + image->data.F32[y][x] *= exptime / (exptime + shutterImage->data.F32[y][x]); + } + } + psFree(shutterImage); + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now, used for reporting + psString timeString = psTimeToISO(time); // String with time + psFree(time); + psStringPrepend(&timeString, "Shutter correction completed at "); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + timeString, ""); + psFree(timeString); + + + return true; +} Index: /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmShutterCorrection.h (revision 12167) @@ -0,0 +1,132 @@ +/* @file pmShutterCorrection.h + * @brief Functions to build and apply a shutter exposure-time correction. + * + * @author Eugene Magnier, IfA + * @author Paul Price, IfA + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_SHUTTER_CORRECTION_H +#define PM_SHUTTER_CORRECTION_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +/* A mechanical shutter may not yield uniform exposure times as a function of + * position on the detector. The typical error consists of a constant + * exposure-time offset relative to the requested value, ie exposure time is + * T_o + dT(x,y). The exposure error, dT, may be measured with the following + * scheme. Obtain a set of exposures with different exposures times taken of + * the same flat-field source; the source must be spatially stable between the + * exposures, but need not have a stable amplitude. For an illuminating flux + * of intensity F(x,y) = F_o f(x,y), the signal recorded by any pixel in the + * detector is given by: S(t,x,y) = F_o(t) f(x,y) (T_o + dT(x,y)) where F_o is + * the F_o(t) is the (variable) overall intensity of the illuminating source + * and f(x,y) is the spatial illumination patter times the flat-field response. + * Choose a reference location in the image (eg, the detector center) and + * divide by the value of that region (ie, mean or median): + * + * s(t,x,y) = S(t,x,y) / S(t,0,0) + * s(t,x,y) = F_o(t) f(x,y) (T_o + dT(x,y)) / F_o(t) f(0,0) (T_o + dT(0,0)) + * s(t,x,y) = f(x,y) (T_o + dT(x,y)) / f(0,0) (T_o + dT(0,0)) + * + * we can absorb the term f(0,0) into f(x,y) as we have no motivation for the + * scale of f(x,y). For any single pixel, over the set of exposures, we thus + * need to solve for dT(x,y), dT(0,0), and f'(x,y) in the equation: + * s(t,x,y) = f'(x,y) (T_o + dT(x,y)) / (T_o + dT(0,0)) + * + * we avoid directly fitting these values as the process would be a non-linear + * least-squares problem for every pixel in the image, and thus very time + * consuming. There are linear options which may be used instead. + * First, as T_o goes to a large value, s() approaches the value of f'(x,y). + * Next, as T_o goes to a very small value, s() approaches the value of + * f'(x,y)*dT(x,y)/dT(0,0). Finally, when s() has the value of + * f'(x,y)*(1 + dT(x,y)/dT(0,0))/2, T_o has the value of dT(0,0). with data + * points covering a reasonable dynamic range, we can solve for these three + * values by interpolation and/or extrapolation. + * + * To take the strategy one step further, we could use the above recipe to + * obtain a guess for the three parameters and then apply non-linear fitting to + * solve more accurately for the parameters. If we limit this operation to a + * handful of positions in the image (user defined, but the obvious choice would + * be positions near the center, edges, and corners), then we may determine a + * good value for dT(0,0). Since there is only one dT(0,0) for the image, we + * can apply the resulting measurement to the rest of the pixels in the image. + * If dT(0,0) is not a free parameter, then the fitting process is linear in + * terms of dT(x,y) and f'(x,y) + */ + +#include + +/// Shutter correction parameters, applicable for a single pixel +typedef struct +{ + double scale; ///< The normalisation for an exposure, A(k) + double offset; ///< The time offset, dTk + double offref; ///< The reference time offset, dTo +} +pmShutterCorrection; + +/// Allocator for shutter correction parameters +pmShutterCorrection *pmShutterCorrectionAlloc(); + +/// Guess a shutter correction, based on plot of counts vs exposure time +/// +/// This function is used before doing the full non-linear fit, to get parameters close to the true. Assumes +/// exptime vector is sorted (ascending order; longest is last) prior to input. +pmShutterCorrection *pmShutterCorrectionGuess(const psVector *exptime, ///< Exposure times for each exposure + const psVector *counts ///< Counts for each exposure + ); + +/// Generate shutter correction based on a linear fit +/// +/// Performs a linear fit to counts as a function of exposure time, with the reference time offset fixed (so +/// that the system is linear). Performs iterative clipping, if nIter > 1. +pmShutterCorrection *pmShutterCorrectionLinFit(const psVector *exptime, ///< Exposure times for each exposure + const psVector *counts, ///< Counts for each exposure + const psVector *cntError, ///< Error in the counts + const psVector *mask, ///< Mask for each exposure + float offref, ///< Reference time offset + int nIter, ///< Number of iterations + float rej, ///< Rejection threshold (sigma) + psMaskType maskVal ///< Mask value + ); + +/// Generate shutter correction based on a full non-linear fit +/// +/// Performs a full non-linear fit to counts as a function of exposure time. The main purpose is to solve for +/// the reference time offset, so that future fits may be performed using linear fitting with the reference +/// time offset fixed. +pmShutterCorrection *pmShutterCorrectionFullFit(const psVector *exptime, ///< Exposure times for each exposure + const psVector *counts, ///< Counts for each exposure + const psVector *cntError, ///< Error in the counts + const pmShutterCorrection *guess ///< Initial guess + ); + +/// Measure a shutter correction image from an array of images +/// +/// Given an array of readouts (with known exposure times from the cell concepts), this function measures the +/// shutter correction (our principal concern is for the time offset, rather than the normalisation) by +/// measuring the reference time offset using the full non-linear fit for a small number of representative +/// regions (middle and corners), and then using that to perform a linear fit to each pixel. +psImage *pmShutterCorrectionMeasure(const psArray *readouts, ///< Array of readouts + int size, ///< Size of samples for statistics for non-linear fit + psStatsOptions meanStat, ///< Statistic to use for mean + psStatsOptions stdevStat, ///< Statistic to use for stdev + int nIter, ///< Number of iterations + float rej, ///< Rejection threshold (sigma) + psMaskType maskVal ///< Mask value + ); + +/// Apply a shutter correction +/// +/// Given a shutter correction (with dT for each pixel), applies this correction to an input image. +bool pmShutterCorrectionApply(pmReadout *readout, ///< Readout to which to apply shutter correction + const pmReadout *shutter ///< Shutter correction readout, with dT for each pixel + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.c =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.c (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.c (revision 12167) @@ -0,0 +1,725 @@ +/** @file pmSubtractSky.c + * + * This file will contain a module which will create a model of the + * background sky and subtract that from the input image. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-11-30 00:52:21 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + * + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmSubtractSky.h" + +// XXX: Get rid of the. Create pmUtils.h +psImage *p_psDetermineTrimmedImage( + pmReadout *in +); + +/****************************************************************************** +DetermineNumBits(data): This routine takes an enum psStatsOptions as an +argument and returns the number of non-zero bits. + +XXX: This code is duplicated in the ReadoutCombine file. + *****************************************************************************/ +static psS32 DetermineNumBits(psStatsOptions data) +{ + psTrace("psModules.detrend", 4, "Calling DetermineNumBits(0x%x)\n", data); + + psS32 i; + psU64 tmpData = data; + psS32 numBits = 0; + + for (i=0;i<(8 * sizeof(psStatsOptions));i++) { + if (0x0001 & tmpData) { + numBits++; + } + tmpData = tmpData >> 1; + } + + psTrace("psModules.detrend", 4, + "Calling DetermineNumBits(0x%x) -> %d\n", data, numBits); + return(numBits); +} + +/****************************************************************************** +getHighestPriorityStatOption(statOptions): this routine takes as input a +psStats->options with multiple options set and returns one with a single +option set according to the precedence set in the SDRS. + *****************************************************************************/ +static psU64 getHighestPriorityStatOption(psU64 statOptions) +{ + psTrace("psModules.detrend", 4, + "Calling getHighestPriorityStatOption(0x%x)\n", statOptions); + + if (statOptions & PS_STAT_SAMPLE_MEAN) { + return(PS_STAT_SAMPLE_MEAN); + } else if (statOptions & PS_STAT_SAMPLE_MEDIAN) { + return(PS_STAT_SAMPLE_MEDIAN); + } else if (statOptions & PS_STAT_CLIPPED_MEAN) { + return(PS_STAT_CLIPPED_MEAN); + } else if (statOptions & PS_STAT_FITTED_MEAN) { + return(PS_STAT_FITTED_MEAN); + } else if (statOptions & PS_STAT_ROBUST_MEDIAN) { + return(PS_STAT_ROBUST_MEDIAN); + } + psError(PS_ERR_UNKNOWN, true, "Unallowable option requested for statistically binning image pixels.\n"); + return(-1); + // XXX + //else if (statOptions & PS_STAT_ROBUST_MODE) { + // return(PS_STAT_ROBUST_MODE); + //} +} + +/****************************************************************************** +psImage *binImage(origImage, binFactor, statOptions): This routine takes an +input psImage and scales it smaller by a factor of binFactor. The statistic +used in combining input pixels is specified in statOptions. + +XXX: use static vectors for myStats, binVector and binMask. +XXX: I coded this before I was aware of a psLib reBin function. I don't +use this function in this module. I'm keeping it here in the event that +requirements change and we might need a custom reBin function. + *****************************************************************************/ +#if 0 +static psImage *binImage(psImage *origImage, + int binFactor, + psStatsOptions statOptions) +{ + psTrace("psModules.detrend", 4, "Calling binImage(%d)\n", binFactor); + + if (binFactor <= 0) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: binImage(): binFactor is %d\n", binFactor); + return(origImage); + } + if (binFactor == 1) { + return(origImage); + } + + psVector *binVector = psVectorAlloc(binFactor * binFactor, PS_TYPE_F32); + psVector *binMask = psVectorAlloc(binFactor * binFactor, PS_TYPE_U8); + psStats *myStats = psStatsAlloc(statOptions); + + for (psS32 row = 0; row < origImage->numRows ; row+=binFactor) { + for (psS32 col = 0; col < origImage->numCols ; col+=binFactor) { + psS32 count = 0; + for (psS32 binRow = 0; binRow <= binFactor ; binRow++) { + for (psS32 binCol = 0; binCol <= binFactor ; binCol++) { + if (((row + binRow) < origImage->numRows) && + ((col + binCol) < origImage->numCols)) { + binVector->data.F32[count] = + origImage->data.F32[row + binRow][col + binCol]; + binMask->data.U8[count] = 0; + } else { + binVector->data.F32[count] = 0.0; + binMask->data.U8[count] = 1; + } + count++; + } + } + psStats *rc1 = psVectorStats(myStats, binVector, NULL, binMask, 1); + if (rc1 == NULL) { + psError(PS_ERR_UNKNOWN, false, "psVectorStats(): could not perform requested statistical operation. Returning in image.\n"); + return(origImage); + } + psF64 statValue; + psBool rc = p_psGetStatValue(rc1, &statValue); + + if (rc == true) { + origImage->data.F32[row][col] = (psF32) statValue; + } else { + origImage->data.F32[row][col] = 0.0; + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(), binImage(): p_psGetStatValue() was FALSE\n"); + } + } + } + psFree(binVector); + psFree(binMask); + psFree(myStats); + + psTrace("psModules.detrend", 4, "Exiting binImage(%d)\n", binFactor); + return(origImage); +} +#endif + +/****************************************************************************** +CalculatePolyTerms(xOrder, yOrder): this routine will calculate the number of +coefficients (or terms) in a 2-D polynomial of order (xOrder, yOrder). + +XXX: Use your brain and figure out the analytical expression. + +XXX: Why isn't it simply (xOrder+1) * (yOrder+1)? + *****************************************************************************/ +static psS32 CalculatePolyTerms(psS32 xOrder, psS32 yOrder) +{ + psTrace("psModules.detrend", 4, + "Calling CalculatePolyTerms(%d, %d)\n", xOrder, yOrder); + + psS32 maxOrder = PS_MAX(xOrder, yOrder); + psS32 localPolyTerms = 0; + psS32 order = 0; + psS32 num=0; + + for (order=0;order<=maxOrder;order++) { + for (num=0;num<=order;num++) { + if (((order-num) <= xOrder) && (num <= yOrder)) { + localPolyTerms++; + } + } + } + psTrace("psModules.detrend", 4, + "Exiting CalculatePolyTerms(%d, %d) -> %d\n", xOrder, yOrder, localPolyTerms); + return(localPolyTerms); + + // return((xOrder+1) * (yOrder+1)); +} + +/****************************************************************************** +buildPolyTerms(): this routine computes a 2-D array polyTerms[][] that holds +terms for the polynomial that is used to model the sky background. We use +this array primarily for convenience in computations involving sky model +polynomials. It is defined as: + polyTerms[i][0] = the power to which X is raised in the i-th term of in an + poly-order sky background polynomial. + + polyTerms[i][1] = the power to which Y is raised in the i-th term of in an + poly-order sky background polynomial. + *****************************************************************************/ +static psS32 **buildPolyTerms(psS32 xOrder, psS32 yOrder) +{ + psTrace("psModules.detrend", 4, + "Calling buildPolyTerms(%d, %d)\n", xOrder, yOrder); + + psS32 i=0; + psS32 order = 0; + psS32 num=0; + psS32 localPolyTerms = CalculatePolyTerms(xOrder, yOrder); + psS32 maxOrder = PS_MAX(xOrder, yOrder); + + // Create the data structure which we hold the xy order of each coeff. + psS32 **polyTerms = (psS32 **) psAlloc(localPolyTerms * sizeof(psS32 *)); + for (i=0; i < localPolyTerms ; i++) { + polyTerms[i] = (psS32 *) psAlloc(2 * sizeof(psS32)); + } + + i=0; + // This code segment loops through each term i in the polynomial and + // calculates the power to which x/y are raised in that i-th term. + // We first do the 0-order terms, then the 1-order terms, etc. + for (order=0;order<=maxOrder;order++) { + for (num=0;num<=order;num++) { + if (((order-num) <= xOrder) && (num <= yOrder)) { + polyTerms[i][0] = order-num; + polyTerms[i][1] = num; + i++; + } + } + } + + if (psTraceGetLevel("psModules.detrend") >= 10) { + for (i=0; i < localPolyTerms ; i++) { + printf("x^%d * y^%d\n", polyTerms[i][0], polyTerms[i][1]); + } + } + + psTrace("psModules.detrend", 4, + "Exiting buildPolyTerms(%d, %d)\n", xOrder, yOrder); + return(polyTerms); +} + +/****************************************************************************** +This procedure calculates various combinations of powers of x and y and stores +them in the data structure p_psPolySums[][]. After it completes: + + p_psPolySums[i][j] == x^i * y^j + +XXX: Use a psImage for the p_psPolySums data structure? +XXX: p_psPolySums: should this be a global? Did you get the storage classifier + and name correct? +XXX: Use variable size arrays for p_psPolySums[][]. +XXX: Must initialize p_psPolySums[][]? + *****************************************************************************/ +#define PS_MAX_POLYNOMIAL_ORDER 20 + +psF64 p_psPolySums[PS_MAX_POLYNOMIAL_ORDER+1][PS_MAX_POLYNOMIAL_ORDER+1]; +static void buildSums(psF64 x, + psF64 y, + psS32 xOrder, + psS32 yOrder) +{ + psTrace("psModules.detrend", 4, + "Calling buildPolyTerms(%d, %d)\n", xOrder, yOrder); + + psS32 i = 0; + psS32 j = 0; + psF64 xSum = 0.0; + psF64 ySum = 0.0; + + xSum = 1.0; + ySum = 1.0; + for(i=0;i<=xOrder;i++) { + ySum = xSum; + for(j=0;j<=yOrder;j++) { + p_psPolySums[i][j] = ySum; + ySum*= y; + } + xSum*= x; + } + psTrace("psModules.detrend", 4, + "Exiting buildPolyTerms(%d, %d)\n", xOrder, yOrder); +} + +/****************************************************************************** +ImageFitPolynomial(myPoly, dataImage, maskImage): this private routine takes +an input image along with a mask and fits a polynomial to it. The degree of +the polynomial is specified by input parameter myPoly, and need not be +symmetrical in orders of X and Y. The polynomial must be type +PS_POLYNOMIAL_ORD. If there are not enough rows or columns in the input image +for the order of the polynomial, then that order is reduced. The algorithm +used in this routine is based on that of the pilot project ADD, but is not +documented anywhere. + +XXX: Different trace message facilities in use here. + *****************************************************************************/ +static psPolynomial2D *ImageFitPolynomial( + psPolynomial2D *myPoly, + psImage *dataImage, + psImage *maskImage) +{ + psTrace("psModules.detrend", 4, + "Calling ImageFitPolynomial()\n"); + PS_ASSERT_POLY_NON_NULL(myPoly, NULL); + PS_ASSERT_POLY_TYPE(myPoly, PS_POLYNOMIAL_ORD, NULL); + PS_ASSERT_IMAGE_NON_NULL(dataImage, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(dataImage, NULL); + PS_ASSERT_IMAGE_TYPE(dataImage, PS_TYPE_F32, NULL); + PS_ASSERT_IMAGE_NON_NULL(maskImage, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(maskImage, NULL); + PS_ASSERT_IMAGE_TYPE(maskImage, PS_TYPE_U8, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(dataImage, maskImage, NULL); + psS32 oldPolyX = -1; + psS32 oldPolyY = -1; + + // The matrix equations become singular if there are more powers of X + // in myPoly then there are rows of the image. I think. Similarly for + // powers of Y and columns. So. Here we reduce the complexity of the + // polynomial if there are not enough rows/columns in the input image. + + if ((myPoly->nX + 1) > dataImage->numRows) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: ImageFitPolynomial(): Reducing polynomial complexity in x-dimension.\n"); + oldPolyX = myPoly->nX; + myPoly->nX = dataImage->numRows - 1; + } + if ((myPoly->nY + 1) > dataImage->numCols) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: ImageFitPolynomial(): Reducing polynomial complexity in y-dimension.\n"); + oldPolyY = myPoly->nY; + myPoly->nY = dataImage->numCols - 1; + } + psS32 i; + psS32 j; + psS32 x; + psS32 y; + psS32 aRow; + psS32 aCol; + psS32 **polyTerms = buildPolyTerms(myPoly->nX, myPoly->nY); + // We determine how many coefficients will be in the polynomial that we + // are fitting to this image. + psS32 localPolyTerms = CalculatePolyTerms(myPoly->nX, myPoly->nY); + psImage *A = psImageAlloc(localPolyTerms, localPolyTerms, PS_TYPE_F64); + psImage *Aout = psImageAlloc(localPolyTerms, localPolyTerms, PS_TYPE_F64); + psVector *B = psVectorAlloc(localPolyTerms, PS_TYPE_F64); + psVector *outPerm = NULL; + + // + // Initialize A matrix and B vector. + // + psImageInit(A, 0.0); + psVectorInit(B, 0.0); + + // + // We build the A matrix and B vector. + // + for (x=0;xnumRows;x++) { + for (y=0;ynumCols;y++) { + if (maskImage->data.U8[x][y] == 0) { + buildSums((psF64) x, (psF64) y, myPoly->nX, myPoly->nY); + + /************************************************************ + This code dervies from equation (7) of the pilot ADD. However, + it is not exactly the same in that the order of the polynomial + may be different in X And Y. + + Equation (7) from the pilot ADD describes 16 linear equations. + The i-th equation is simply the partial derivative of the + sky background polynomial (1) w.r.t. to the i-th term in + that polynomial. The i-th equation is stored in row i of + matrix A[][] (matrix A[][] has origin (1,1), not (0,0)). To + compute A[i][j] we simply multiply the j-th term of the Sky + Background Polynomial (SBP) by the i-th term of SBP. + ************************************************************/ + for (aRow=0;aRowdata.F64[aRow][aCol]+= + (p_psPolySums[ polyTerms[aCol][0] ][ polyTerms[aCol][1] ] * + p_psPolySums[ polyTerms[aRow][0] ][ polyTerms[aRow][1] ]); + } + } + // Build the B[] vector, which is the right-hand side of (7). + for (i=0;idata.F64[i]+= dataImage->data.F32[x][y] * + p_psPolySums[ polyTerms[i][0] ][ polyTerms[i][1] ]; + } + } + } + } + + if (psTraceGetLevel(".psModule.pmSubtractSky.ImageFitPolynomial") >= 8) { + for (aRow=0;aRowdata.F64[aRow][aCol]); + } + } + + for (i=0;i<=localPolyTerms;i++) { + printf("B[%d] is %f\n", i, B->data.F64[i]); + } + } + + // + // Solve the matrix equations for the polynomial coefficients C. + // XXX: How do we know if these matrix operations were successful? + // + Aout = psMatrixLUD(Aout, &outPerm, A); + PS_ASSERT_IMAGE_NON_NULL(Aout, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(Aout, NULL); + psVector *C = psVectorAlloc(localPolyTerms, PS_TYPE_F64); + psMatrixLUSolve(C, Aout, B, outPerm); + + // + // Set the appropriate coefficients in the myPoly structure. + // + for (i=0;icoeff[ polyTerms[i][0] ][ polyTerms[i][1] ] = C->data.F64[i]; + psTrace("psModules.detrend", 6, + "myPoly->coeff[%d][%d] is %f\n", polyTerms[i][0], polyTerms[i][1], myPoly->coeff[ polyTerms[i][0] ][ polyTerms[i][1] ]); + } + + // + // Free data structures that were allocated in this module. + // + for (i=0;inX = oldPolyX; + for (i=oldPolyX ; i < (1 + myPoly->nX) ; i++) { + for (j=0;j<(1 + myPoly->nY) ; j++) { + myPoly->coeff[i][j] = 0.0; + } + } + } + if (oldPolyY != -1) { + myPoly->nY = oldPolyY; + for (i=0 ; i < (1 + myPoly->nX) ; i++) { + for (j=oldPolyY;j < (1 + myPoly->nY) ; j++) { + myPoly->coeff[i][j] = 0.0; + } + } + } + + psTrace("psModules.detrend", 4, + "Exiting ImageFitPolynomial()\n"); + // psTrace("psModules.detrend", 4, + // "---- ImageFitPolynomial() end successfully ----\n"); + return(myPoly); +} + + +/****************************************************************************** +pmReadout pmSubtractSky(): + +XXX: use static vectors for myStats, and the binned image + +XXX: The SDR is silent about types. PS_TYPE_F32 is implemented here. + +XXX: Sync the psTrace message facilities. + *****************************************************************************/ +pmReadout *pmSubtractSky(pmReadout *in, + void *fitSpec, + psFit fit, + psS32 binFactor, + psStats *stats, + psF32 clipSD) +{ + PS_ASSERT_READOUT_NON_NULL(in, NULL); + PS_ASSERT_READOUT_NON_EMPTY(in, NULL); + PS_ASSERT_READOUT_TYPE(in, PS_TYPE_F32, NULL); + PS_WARN_PTR_NON_NULL(in->parent); + if (in->parent != NULL) { + PS_WARN_PTR_NON_NULL(in->parent->concepts); + } + psTrace("psModules.detrend", 4, + "---- pmSubtractSky() begin ----\n"); + + if ((fit != PM_FIT_NONE) && + (fit != PM_FIT_POLYNOMIAL) && + (fit != PM_FIT_SPLINE)) { + psError(PS_ERR_UNKNOWN, true, "psFit is unallowable (%d). Returning in image.\n", fit); + return(in); + } + + psStatsOptions statOptions = 0; + + // + // Return the original input readout if the fit specs are poorly defined. + // No warning or error messages should be generated. + // + if ((fitSpec == NULL) || + ((fit == PM_FIT_NONE) || (fit == PM_FIT_SPLINE))) { + // psLogMsg(__func__, PS_LOG_WARN, "Fit specs are poorly defined. Returning in image.\n"); + return(in); + } + + // + // Determine trimmed image from metadata. + // + + psImage *trimmedImg = p_psDetermineTrimmedImage(in); + psImage *binnedImage = NULL; + psPolynomial2D *myPoly = NULL; + psImage *binnedMaskImage = NULL; + psU32 oldStatOptions = 0; + + // + // Determine which statistic to use when binning pixels, if any. + // + if (stats != NULL) { + statOptions = stats->options; + if (1 < DetermineNumBits(statOptions)) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: Multiple statistical options have been requested.\n"); + statOptions = getHighestPriorityStatOption(statOptions); + if (statOptions == -1) { + psError(PS_ERR_UNKNOWN, true, "Not allowable stats->option was specified. Returning in image.\n"); + return(in); + } + // Save old input "stats" parameter. + oldStatOptions = stats->options; + stats->options = statOptions; + } + if (0 == DetermineNumBits(statOptions)) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(): no stats->options was requested\n"); + } + } + + // + // Generate required warning messages. + // + if (binFactor <= 0) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(): binFactor is %d\n", binFactor); + } + if (stats == NULL) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(): input parameter stats is NULL\n"); + } + + // + // Bin the input image according to input parameters. + // Create a new binned image mask. + // + if ((binFactor <= 1) || (stats == NULL) || (0 == DetermineNumBits(statOptions))) { + // No binning is required here. Simply create a copy of the image + // and a mask. + binnedImage = psImageCopy(binnedImage, trimmedImg, PS_TYPE_F32); + if (binnedImage == NULL) { + psError(PS_ERR_UNKNOWN, false, "psImageCopy() returned NULL. Returning in image.\n"); + return(in); + } + + if (in->mask != NULL) { + binnedMaskImage = psImageCopy(binnedMaskImage, in->mask, PS_TYPE_U8); + if (binnedMaskImage == NULL) { + psError(PS_ERR_UNKNOWN, false, "psImageCopy() returned NULL. Returning in image.\n"); + psFree(binnedImage); + return(in); + } + } else { + binnedMaskImage = psImageAlloc(binnedImage->numCols, + binnedImage->numRows, + PS_TYPE_U8); + psImageInit(binnedMaskImage, 0); + } + } else { + binnedImage = psImageRebin(NULL, trimmedImg, in->mask, 0, binFactor, stats); + if (binnedImage == NULL) { + psError(PS_ERR_UNKNOWN, false, "psImageRebin() returned NULL. Returning in image.\n"); + return(in); + } + binnedMaskImage = psImageAlloc(binnedImage->numCols, + binnedImage->numRows, + PS_TYPE_U8); + psImageInit(binnedMaskImage, 0); + } + psTrace("psModules.detrend", 4, + "binnedImage size is (%d, %d)\n", binnedImage->numRows, binnedImage->numCols); + + // + // Clip pixels that are outside the acceptable range. + // + if (clipSD <= 0.0) { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(): clipSD is %f\n", clipSD); + } else { + // Determine the mean and standard deviation of the binned image. + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + if (!psImageStats(myStats, binnedImage, NULL, 0)) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Couldn't get statistics for image.\n"); + return NULL; + } + psF64 binnedMean = myStats->sampleMean; + psF64 binnedStdev = myStats->sampleStdev; + psFree(myStats); + psTrace("psModules.detrend", 6, + "binned StDev is %f\n", binnedStdev); + + // Clip all pixels which are more than clipSD sigmas from the mean. + psTrace("psModules.detrend", 6, + "clipSD is %f\n", clipSD); + + for (psS32 row = 0; row < binnedImage->numRows ; row++) { + for (psS32 col = 0; col < binnedImage->numCols ; col++) { + if (fabs(binnedImage->data.F32[row][col] - binnedMean) > + (clipSD * binnedStdev)) { + binnedMaskImage->data.U8[row][col] = 1; + } + } + } + } + + // + // Fit the polynomial to the binned image + // + if (fit == PM_FIT_POLYNOMIAL) { + myPoly = (psPolynomial2D *) fitSpec; + PS_ASSERT_POLY_NON_NULL(myPoly, NULL); + PS_ASSERT_POLY_TYPE(myPoly, PS_POLYNOMIAL_ORD, NULL); + + myPoly = ImageFitPolynomial(myPoly, binnedImage, binnedMaskImage); + + if (myPoly != NULL) { + // Set the pixels in the binned image to that of the polynomial. + binnedImage = psImageEvalPolynomial(binnedImage, myPoly); + if (binnedImage == NULL) { + psError(PS_ERR_UNKNOWN, false, "psImageEvalPolynomial() returned NULL. Returning in image.\n"); + psFree(binnedMaskImage); + if (!((binFactor <= 1) || (stats == NULL))) { + psFree(binnedImage); + } + if (oldStatOptions != 0) { + stats->options = statOptions; + } + return(in); + } + } else { + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: pmSubtractSky(): could not model sky with a polynomial.\n"); + psFree(binnedMaskImage); + if (!((binFactor <= 1) || (stats == NULL))) { + psFree(binnedImage); + } + if (oldStatOptions != 0) { + stats->options = statOptions; + } + return(in); + } + } else { + // We shouldn't get here since we check this above. + psError(PS_ERR_UNKNOWN, true, "Unallowable fit type. Returning in image.\n"); + psFree(binnedMaskImage); + if (!((binFactor <= 1) || (stats == NULL))) { + psFree(binnedImage); + } + if (oldStatOptions != 0) { + stats->options = statOptions; + } + return(in); + } + + // + //Subtract the polynomially fitted image from the original image + // + if (binFactor <= 1) { + // The binned image is the same size as the original image. + for (psS32 row = 0; row < trimmedImg->numRows ; row++) { + for (psS32 col = 0; col < trimmedImg->numCols ; col++) { + trimmedImg->data.F32[row][col]-= binnedImage->data.F32[row][col]; + } + } + } else { + for (psS32 row = 0; row < trimmedImg->numRows ; row++) { + for (psS32 col = 0; col < trimmedImg->numCols ; col++) { + // We calculate the F32 value of the pixel coordinates in the + // binned image and then use a pixel interpolation routine to + // determine the value of the pixel at that location. + psF32 binRowF64 = ((psF32) row) / ((psF32) binFactor); + psF32 binColF64 = ((psF32) col) / ((psF32) binFactor); + + // We add 0.5 to the pixel locations since the pixel + // interpolation routine defines the location of pixel + // (i, j) as (i+0.5, j+0.5). + binRowF64+= 0.5; + binColF64+= 0.5; + + psF32 binPixel = (psF32) psImagePixelInterpolate( + binnedImage, binColF64, binRowF64, + NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + trimmedImg->data.F32[row][col]-= binPixel; + + psTrace("psModules.detrend", 8, + "image[%d][%d] <--> binnedImage[%.2f][%.2f]: %f\n", + row, col, binRowF64-0.5, binColF64-0.5, binPixel); + } + } + + } + psFree(binnedMaskImage); + psFree(binnedImage); + if (oldStatOptions != 0) { + stats->options = statOptions; + } + + psTrace("psModules.detrend", 4, + "---- pmSubtractSky() exit successfully ----\n"); + return(in); +} Index: /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.h =================================================================== --- /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.h (revision 12167) +++ /branches/rel-1-1/psModules/src/detrend/pmSkySubtract.h (revision 12167) @@ -0,0 +1,39 @@ +/* @file pmSubtractSky.h + * + * This file will contain a module which will create a model of the + * background sky and subtract that from the input image. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PM_SUBTRACT_SKY_H +#define PM_SUBTRACT_SKY_H + +/// @addtogroup detrend Detrend Creation and Application +/// @{ + +#include +#include +#include "pslib.h" +#include "pmFPA.h" + +// XXX: this is pmFit in pmSubtractBias.c, named psFit here. +typedef enum { + PM_FIT_NONE, ///< No fit + PM_FIT_POLYNOMIAL, ///< Fit polynomial + PM_FIT_SPLINE ///< Fit cubic splines +} psFit; + +pmReadout *pmSubtractSky(pmReadout *in, + void *fitSpec, + psFit fit, + int binFactor, + psStats *stats, + float clipSD); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/extras/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/extras/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +.deps +.libs +Makefile +Makefile.in +libpsmodulesextras.la +libpsmodulesextras_la-pmKapaPlots.lo +libpsmodulesextras_la-psIOBuffer.lo +libpsmodulesextras_la-psPipe.lo +libpsmodulesextras_la-psVectorBracket.lo Index: /branches/rel-1-1/psModules/src/extras/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/extras/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/Makefile.am (revision 12167) @@ -0,0 +1,17 @@ +noinst_LTLIBRARIES = libpsmodulesextras.la + +libpsmodulesextras_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) -I../pslib/ +libpsmodulesextras_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulesextras_la_SOURCES = \ + psVectorBracket.c \ + psPipe.c \ + psIOBuffer.c \ + pmKapaPlots.c + +pkginclude_HEADERS = \ + psVectorBracket.h \ + psPipe.h \ + psIOBuffer.h \ + pmKapaPlots.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/extras/pmKapaPlots.c =================================================================== --- /branches/rel-1-1/psModules/src/extras/pmKapaPlots.c (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/pmKapaPlots.c (revision 12167) @@ -0,0 +1,232 @@ +/** @file pmAstrometryWCS.c + * + * @brief functions to convert FITS WCS keywords to / from pmFPA structures + * + * @ingroup Astrometry + * + * @author EAM, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-20 19:27:40 $ + * + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "pmKapaPlots.h" + +// the top portion of this file defines plotting functions which use kapa for plotting. +// if kapa is not available, these functions are defined in the bottom portion as stubs +// which perform NOP and return false (XXX should this be 'true' ??) + +# if (HAVE_KAPA) + + // XXX not thread safe (perhaps not needed) + // to make this thread safe, we could check the thread ID and tie to it + static int kapa_fd = -1; + +int pmKapaOpen (bool showWindow) +{ + char kapa[64]; + + if (showWindow) { + strcpy (kapa, "kapa"); + } else { + strcpy (kapa, "kapa -noX"); + } + + if (kapa_fd == -1) { + kapa_fd = KapaOpen (kapa, "psphot"); + } + return kapa_fd; +} + +bool pmKapaClose () +{ + + if (kapa_fd == -1) + return true; + KapaClose (kapa_fd); + kapa_fd = -1; + return true; +} + +bool pmKapaPlotVectorPair_AutoLimits_OpenGraph (int kapa, Graphdata *graphdata, psVector *xVec, psVector *yVec) +{ + + // set limits based on data values + graphdata->xmin = FLT_MAX; + graphdata->xmax = FLT_MIN; + graphdata->ymin = FLT_MAX; + graphdata->ymax = FLT_MIN; + for (int i = 0; i < xVec->n; i++) { + graphdata->xmin = PS_MIN (graphdata->xmin, xVec->data.F32[i]); + graphdata->xmax = PS_MAX (graphdata->xmax, xVec->data.F32[i]); + graphdata->ymin = PS_MIN (graphdata->ymin, yVec->data.F32[i]); + graphdata->ymax = PS_MAX (graphdata->ymax, yVec->data.F32[i]); + } + // add 5% to range + float range; + + range = graphdata->xmax - graphdata->xmin; + graphdata->xmax += 0.05*range; + graphdata->xmin -= 0.05*range; + + range = graphdata->ymax - graphdata->ymin; + graphdata->ymax += 0.05*range; + graphdata->ymin -= 0.05*range; + + KapaSetLimits (kapa, graphdata); + KapaSetFont (kapa, "helvetica", 14); + KapaBox (kapa, graphdata); + + KapaPrepPlot (kapa, xVec->n, graphdata); + KapaPlotVector (kapa, xVec->n, xVec->data.F32); + KapaPlotVector (kapa, yVec->n, yVec->data.F32); + return true; +} + +bool pmKapaPlotVectorPair (psVector *xVec, psVector *yVec) +{ + + Graphdata graphdata; + + int kapa = pmKapaOpen (true); + if (kapa == -1) { + psError(PS_ERR_UNKNOWN, true, "failure to open kapa"); + return false; + } + + if (xVec->n != yVec->n) + return false; + + KapaInitGraph (&graphdata); + KapaClear (kapa, TRUE); + + // set limits based on data values + graphdata.xmin = FLT_MAX; + graphdata.xmax = FLT_MIN; + graphdata.ymin = FLT_MAX; + graphdata.ymax = FLT_MIN; + for (int i = 0; i < xVec->n; i++) { + graphdata.xmin = PS_MIN (graphdata.xmin, xVec->data.F32[i]); + graphdata.xmax = PS_MAX (graphdata.xmax, xVec->data.F32[i]); + graphdata.ymin = PS_MIN (graphdata.ymin, yVec->data.F32[i]); + graphdata.ymax = PS_MAX (graphdata.ymax, yVec->data.F32[i]); + } + // add 5% to range + float range; + + range = graphdata.xmax - graphdata.xmin; + graphdata.xmax += 0.05*range; + graphdata.xmin -= 0.05*range; + + range = graphdata.ymax - graphdata.ymin; + graphdata.ymax += 0.05*range; + graphdata.ymin -= 0.05*range; + + KapaSetLimits (kapa, &graphdata); + KapaSetFont (kapa, "helvetica", 14); + KapaBox (kapa, &graphdata); + + graphdata.color = KapaColorByName ("black"); + graphdata.ptype = 0; + graphdata.size = 0.5; + graphdata.style = 2; + KapaPrepPlot (kapa, xVec->n, &graphdata); + KapaPlotVector (kapa, xVec->n, xVec->data.F32); + KapaPlotVector (kapa, yVec->n, yVec->data.F32); + + return true; +} + +bool pmKapaPlotVectorTriple_AutoLimits_OpenGraph (int kapa, Graphdata *graphdata, psVector *xVec, psVector *yVec, psVector *zVec, bool increasing) +{ + + // set limits based on data values + graphdata->xmin = FLT_MAX; + graphdata->xmax = FLT_MIN; + graphdata->ymin = FLT_MAX; + graphdata->ymax = FLT_MIN; + float zmin = FLT_MAX; + float zmax = FLT_MIN; + for (int i = 0; i < xVec->n; i++) { + graphdata->xmin = PS_MIN (graphdata->xmin, xVec->data.F32[i]); + graphdata->xmax = PS_MAX (graphdata->xmax, xVec->data.F32[i]); + graphdata->ymin = PS_MIN (graphdata->ymin, yVec->data.F32[i]); + graphdata->ymax = PS_MAX (graphdata->ymax, yVec->data.F32[i]); + zmin = PS_MIN (zmin, zVec->data.F32[i]); + zmax = PS_MAX (zmax, zVec->data.F32[i]); + } + // add 5% to range + float range; + + psVector *zScale = psVectorAlloc (zVec->n, PS_DATA_F32); + + range = zmax - zmin; + if (range == 0.0) { + psVectorInit (zScale, 1.0); + } else { + for (int i = 0; i < zVec->n; i++) { + if (increasing) { + zScale->data.F32[i] = PS_MIN (1.5, PS_MAX(0.05, 1.5*(zVec->data.F32[i] - zmin)/range)); + } else { + zScale->data.F32[i] = PS_MIN (1.5, PS_MAX(0.05, 1.5*(zmax - zVec->data.F32[i])/range)); + } + } + } + + range = graphdata->xmax - graphdata->xmin; + graphdata->xmax += 0.05*range; + graphdata->xmin -= 0.05*range; + + range = graphdata->ymax - graphdata->ymin; + graphdata->ymax += 0.05*range; + graphdata->ymin -= 0.05*range; + + KapaSetLimits (kapa, graphdata); + KapaSetFont (kapa, "helvetica", 14); + KapaBox (kapa, graphdata); + + // the point size will be scaled from the z vector + graphdata->size = -1; + KapaPrepPlot (kapa, xVec->n, graphdata); + KapaPlotVector (kapa, xVec->n, xVec->data.F32); + KapaPlotVector (kapa, yVec->n, yVec->data.F32); + KapaPlotVector (kapa, zVec->n, zScale->data.F32); + psFree (zScale); + return true; +} + +# else + # include "pmKapaPlots.h" + + int pmKapaOpen (bool showWindow) +{ + return -1; +} + +bool pmKapaClose () +{ + return true; +} + +bool pmKapaPlotVectorPair (psVector *xVec, psVector *yVec) +{ + return false; +} + +bool pmKapaPlotVectorPair_AutoLimits_OpenGraph (int kapa, void *graphdata, psVector *xVec, psVector *yVec) +{ + return false; +} + +bool pmKapaPlotVectorTriple_AutoLimits_OpenGraph (int kapa, void *graphdata, psVector *xVec, psVector *yVec, psVector *zVec, bool increasing) +{ + return false; +} +# endif Index: /branches/rel-1-1/psModules/src/extras/pmKapaPlots.h =================================================================== --- /branches/rel-1-1/psModules/src/extras/pmKapaPlots.h (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/pmKapaPlots.h (revision 12167) @@ -0,0 +1,35 @@ +/* @file pmKapaPlots.h + * @brief functions to make plots with the external program 'kapa' + * + * @author EAM, IfA + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-31 03:11:35 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_KAPA_PLOTS_H +#define PM_KAPA_PLOTS_H + +/// @addtogroup Extras Miscellaneous Funtions +/// @{ + +// move to psLib or psModules +int pmKapaOpen (bool showWindow); +bool pmKapaClose (); +bool pmKapaPlotVectorPair (psVector *xVec, psVector *yVec); + +# if (HAVE_KAPA) + # include + + // yes, this is an absurd name... + bool pmKapaPlotVectorPair_AutoLimits_OpenGraph (int kapa, Graphdata *graphdata, psVector *xVec, psVector *yVec); +bool pmKapaPlotVectorTriple_AutoLimits_OpenGraph (int kapa, Graphdata *graphdata, psVector *xVec, psVector *yVec, psVector *zVec, bool increasing); +# else + + bool pmKapaPlotVectorPair_AutoLimits_OpenGraph (int kapa, void *graphdata, psVector *xVec, psVector *yVec); +bool pmKapaPlotVectorTriple_AutoLimits_OpenGraph (int kapa, void *graphdata, psVector *xVec, psVector *yVec, psVector *zVec, bool increasing); +# endif + +/// @} +#endif // PM_KAPA_PLOTS_H Index: /branches/rel-1-1/psModules/src/extras/psIOBuffer.c =================================================================== --- /branches/rel-1-1/psModules/src/extras/psIOBuffer.c (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psIOBuffer.c (revision 12167) @@ -0,0 +1,113 @@ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "psIOBuffer.h" + +static void psIOBufferFree (psIOBuffer *buffer) +{ + if (buffer == NULL) + return; + + psFree (buffer->data); + return; +} + +psIOBuffer *psIOBufferAlloc (int nBuffer) +{ + + psIOBuffer *buffer = (psIOBuffer *)psAlloc(sizeof(psIOBuffer)); + psMemSetDeallocator(buffer, (psFreeFunc) psIOBufferFree); + + buffer->data = (char *) psAlloc (nBuffer + 1); + + buffer->nAlloc = nBuffer + 1; + buffer->nReset = nBuffer; + buffer->nBlock = nBuffer / 2; + buffer->n = 0; + return (buffer); +} + +bool psIOBufferFlush (psIOBuffer *buffer) +{ + + if (buffer == NULL) + return false; + buffer->n = 0; + buffer->nAlloc = buffer->nReset; + buffer->data = psRealloc (buffer->data, buffer->nAlloc); + bzero (buffer->data, buffer->nAlloc); + + return true; +} + +int psIOBufferRead (psIOBuffer *buffer, int fd) +{ + + int Nread, Nfree; + + if (fd == 0) { + /* pipe is closed */ + return (0); + } + + Nfree = buffer->nAlloc - buffer->n - 1; + + // extend the data block if needed + if (Nfree < buffer->nBlock) { + buffer->nAlloc += 2*buffer->nBlock + 1; + buffer->data = psRealloc (buffer->data, buffer->nAlloc); + Nfree = buffer->nAlloc - buffer->n; + bzero (buffer->data + buffer->n, Nfree); + } + + // attempt to read from the fd into the buffer + Nread = read (fd, &buffer->data[buffer->n], buffer->nBlock); + + if (Nread >= 0) { + buffer->n += Nread; + buffer->data[buffer->n] = 0; + return (Nread); + } + + // check on exit status (try again if waiting for non-blocking fd) + if (Nread == -1) { + switch (errno) { + case EAGAIN: + case EIO: + /** no data available in pipe **/ + return (-1); + default: + /** error reading from pipe **/ + psError (PS_ERR_IO, true, "error on psIOBufferRead"); + return (-2); + } + } + return (Nread); +} + +/* read until buffer is empty (Nmax retries) */ +int psIOBufferReadEmpty (psIOBuffer *buffer, int Nmax, int fd) +{ + + int i, status; + + status = -1; + for (i = 0; (status != 0) && (i < Nmax); i++) { + status = psIOBufferRead (buffer, fd); + if (status == -2) + return false; + if (status == -1) + usleep (10000); + if (status > 0) + i = 0; + } + if (status == -1) + return false; + return true; +} Index: /branches/rel-1-1/psModules/src/extras/psIOBuffer.h =================================================================== --- /branches/rel-1-1/psModules/src/extras/psIOBuffer.h (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psIOBuffer.h (revision 12167) @@ -0,0 +1,34 @@ +/* @file IOBuffer.h + * @brief input/output character buffer + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PS_IO_BUFFER_H +#define PS_IO_BUFFER_H + +/// @addtogroup Extras Miscellaneous Funtions +/// @{ + +typedef struct +{ + char *data; + int nAlloc; // current size of allocated buffer + int nReset; // size to set buffer after flush + int nBlock; // number of bytes to try to read at a time + int n; // current size of filled data +} +psIOBuffer; + +// psIOBuffer functions +psIOBuffer *psIOBufferAlloc (int nBuffer); +bool psIOBufferFlush (psIOBuffer *buffer); +int psIOBufferRead (psIOBuffer *buffer, int fd); +int psIOBufferReadEmpty (psIOBuffer *buffer, int maxRetries, int fd); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/extras/psPipe.c =================================================================== --- /branches/rel-1-1/psModules/src/extras/psPipe.c (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psPipe.c (revision 12167) @@ -0,0 +1,210 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +void closePipes (int *stdin_fd, int *stdout_fd, int *stderr_fd) +{ + + if (stdin_fd[0] != 0) + close (stdin_fd[0]); + if (stdin_fd[1] != 0) + close (stdin_fd[0]); + if (stdout_fd[0] != 0) + close (stdout_fd[0]); + if (stdout_fd[1] != 0) + close (stdout_fd[1]); + if (stderr_fd[0] != 0) + close (stderr_fd[0]); + if (stderr_fd[1] != 0) + close (stderr_fd[1]); +} + +static void psPipeFree (psPipe *pipe) +{ + return; +} + +psPipe *psPipeAlloc () +{ + psPipe *pipe = (psPipe *)psAlloc(sizeof(psPipe)); + psMemSetDeallocator(pipe, (psFreeFunc) psPipeFree); + + pipe->fd_stdin = 0; + pipe->fd_stdout = 0; + pipe->fd_stderr = 0; + return (pipe); +} + +psPipe *psPipeOpen (char *command) +{ + + int stdin_fd[2], stdout_fd[2], stderr_fd[2], status; + pid_t pid; + + bzero (stdin_fd, 2*sizeof(int)); + bzero (stdout_fd, 2*sizeof(int)); + bzero (stderr_fd, 2*sizeof(int)); + + if (pipe (stdin_fd) < 0) { + psError (PS_ERR_UNKNOWN, true, "cannot create pipe file descriptor"); + closePipes (stdin_fd, stdout_fd, stderr_fd); + return NULL; + } + if (pipe (stdout_fd) < 0) { + psError (PS_ERR_UNKNOWN, true, "cannot create pipe file descriptor"); + closePipes (stdin_fd, stdout_fd, stderr_fd); + return NULL; + } + if (pipe (stderr_fd) < 0) { + psError (PS_ERR_UNKNOWN, true, "cannot create pipe file descriptor"); + closePipes (stdin_fd, stdout_fd, stderr_fd); + return NULL; + } + + psArray *cmd = psStringSplitArray (command, " ", false); + if (cmd->n <= 0) { + psError (PS_ERR_UNKNOWN, true, "empty command for pipe"); + psFree (cmd); + closePipes (stdin_fd, stdout_fd, stderr_fd); + return NULL; + } + + // create the command line array needed by execvp + char **argv = (char **)psAlloc((cmd->n+1)*sizeof(char *)); + for (int i = 0; i < cmd->n; i++) { + argv[i] = cmd->data[i]; + } + argv[cmd->n] = NULL; + + pid = fork (); + if (!pid) { /* must be child process */ + /* close the other ends of the pipes */ + close (stdin_fd[1]); + close (stdout_fd[0]); + close (stderr_fd[0]); + + /* tie our ends of the pipes to stdin, stdout, stderr */ + dup2 (stdin_fd[0], STDIN_FILENO); + dup2 (stdout_fd[1], STDOUT_FILENO); + dup2 (stderr_fd[1], STDERR_FILENO); + + /* set all three unblocking */ + setvbuf (stdin, (char *) NULL, _IONBF, BUFSIZ); + setvbuf (stdout, (char *) NULL, _IONBF, BUFSIZ); + setvbuf (stderr, (char *) NULL, _IONBF, BUFSIZ); + + status = execvp (argv[0], argv); + + // this statement exits the child, not the parent, process + exit (1); + } + psFree (cmd); + psFree (argv); + + if (pid == -1) { + psError (PS_ERR_UNKNOWN, true, "unable to create child process"); + closePipes (stdin_fd, stdout_fd, stderr_fd); + return NULL; + } + + /* close the other ends of the pipes */ + close (stdin_fd[0]); + stdin_fd[0] = 0; + close (stdout_fd[1]); + stdout_fd[1] = 0; + close (stderr_fd[1]); + stderr_fd[1] = 0; + + /* make the pipes non-blocking */ + fcntl (stdin_fd[1], F_SETFL, O_NONBLOCK); + fcntl (stdout_fd[0], F_SETFL, O_NONBLOCK); + fcntl (stderr_fd[0], F_SETFL, O_NONBLOCK); + + psPipe *pipe = psPipeAlloc(); + + pipe->pid = pid; + pipe->fd_stdin = stdin_fd[1]; + pipe->fd_stdout = stdout_fd[0]; + pipe->fd_stderr = stderr_fd[0]; + + return (pipe); +} + +// this function returns the exit status of the called function +// or a value > 255 on an error +int psPipeClose (psPipe *pipe) +{ + int close_status; + int exit_status; + int wait_status; + int result; + + PS_ASSERT_PTR_NON_NULL(pipe, false); + + close_status = true; + if (close (pipe->fd_stdin) != 0) { + psError(PS_ERR_IO, true, "error closing the pipe stdin (pid %d, error %s)\n", pipe->pid, strerror(errno)); + close_status = false; + } + if (close (pipe->fd_stdout) != 0) { + psError(PS_ERR_IO, true, "error closing the pipe stdout (pid %d, error %s)\n", pipe->pid, strerror(errno)); + close_status = false; + } + if (close (pipe->fd_stderr) != 0) { + psError(PS_ERR_IO, true, "error closing the pipe sterr (pid %d, error %s)\n", pipe->pid, strerror(errno)); + close_status = false; + } + + // we expect the child process to have exited. + // wait for the exit condition, but no longer than 100ms + for (int i = 0; i < 10; i++) { + result = waitpid (pipe->pid, &wait_status, WNOHANG); + switch (result) { + case -1: // error on waitpid + switch (errno) { + case ECHILD: + psError(PS_ERR_IO, true, "unknown PID, not a child process: %d\n", pipe->pid); + return 0x100; + default: + psAbort("unexpected response to waitpid: %d\n", result); + } + break; + + case 0: // child not yet exited + usleep (10000); + continue; + + default: + if (result != pipe->pid) { + psAbort("waitpid error: mis-matched PID (%d vs %d). programming error\n", result, pipe->pid); + } + if (WIFEXITED(wait_status)) { + exit_status = WEXITSTATUS(wait_status); + if (close_status) { + return exit_status; + } else { + return (0x100); + } + } + if (WIFSIGNALED(wait_status)) { + psError(PS_ERR_IO, true, "job %d exited on signal %d\n", pipe->pid, WTERMSIG(wait_status)); + return (0x100 + WTERMSIG(wait_status)); + } + if (WIFSTOPPED(wait_status)) { + psAbort("waitpid returns 'stopped' programming error\n"); + } + } + } + psError(PS_ERR_IO, true, "child process pid %d did not exit\n", pipe->pid); + return 0x100; +} Index: /branches/rel-1-1/psModules/src/extras/psPipe.h =================================================================== --- /branches/rel-1-1/psModules/src/extras/psPipe.h (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psPipe.h (revision 12167) @@ -0,0 +1,33 @@ +/* @file psPipe.h + * @brief 3-stream pipe + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +#ifndef PS_PIPE_H +#define PS_PIPE_H + +/// @addtogroup Extras Miscellaneous Funtions +/// @{ + +// move these to pslib?? +typedef struct +{ + int pid; + int fd_stdin; + int fd_stdout; + int fd_stderr; +} +psPipe; + +// psPipe functions +psPipe *psPipeAlloc (); +psPipe *psPipeOpen (char *command); +int psPipeClose (psPipe *pipe); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/extras/psVectorBracket.c =================================================================== --- /branches/rel-1-1/psModules/src/extras/psVectorBracket.c (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psVectorBracket.c (revision 12167) @@ -0,0 +1,137 @@ +/** @file psVectorBracket.c + * + * Vector Bracketing tools + * + * @author EAM, IfA + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-10 18:27:26 $ + * + * Copyright 2006 Institute for Astronomy, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "psVectorBracket.h" + +// return the last entry below or first entry above key value +int psVectorBracket(const psVector *index, psF32 key, bool above) +{ + + int N; + int Nlo = 0; + int Nhi = index->n; + + if (above) { + while (Nhi - Nlo > 10) { + N = 0.5*(Nlo + Nhi); + if (index->data.F32[N] > key) { + Nhi = N; + } else { + Nlo = N - 1; + } + } + // at this point, index[Nhi] > key >= index[Nlo] + N = Nlo; + while ((index->data.F32[N] <= key) && (N < Nhi)) { + N++; + } + return (N); + } + while (Nhi - Nlo > 10) { + N = 0.5*(Nlo + Nhi); + if (index->data.F32[N] < key) { + Nlo = N; + } else { + Nhi = N + 1; + } + } + // at this point, index[Nhi] >= key > index[Nlo] + N = Nhi; + while ((index->data.F32[N] >= key) && (N > Nlo)) { + N--; + } + return (N); +} + +// return the last entry below or first entry above key value (reverse sorted input) +int psVectorBracketDescend(const psVector *index, psF32 key, bool above) +{ + + int N; + int Nhi = 0; + int Nlo = index->n; + + if (above) { + while (Nlo - Nhi > 10) { + N = 0.5*(Nhi + Nlo); + if (index->data.F32[N] < key) { + Nlo = N; + } else { + Nhi = N - 1; + } + } + // at this point, index[Nhi] >= key > index[Nlo] + N = Nhi; + while ((index->data.F32[N] >= key) && (N < Nlo)) { + N++; + } + return (N); + } + while (Nlo - Nhi > 10) { + N = 0.5*(Nhi + Nlo); + if (index->data.F32[N] > key) { + Nhi = N; + } else { + Nlo = N + 1; + } + } + // at this point, index[Nhi] > key >= index[Nlo] + N = Nlo; + while ((index->data.F32[N] <= key) && (N > Nhi)) { + N--; + } + return (N); +} + +// search for the bins bounding key in index, interpolate the corresponding values +psF32 psVectorInterpolate(const psVector *index, const psVector *value, psF32 key) +{ + + int n0 = 0; + int n1 = 0; + + // extrapolate at ends + if (key < index->data.F32[0]) { + n0 = 0; + n1 = 1; + } + + // extrapolate at ends + if (key > index->data.F32[index->n-1]) { + n0 = index->n-2; + n1 = index->n-1; + } + + if (n1 == 0) { + n0 = psVectorBracket (index, key, FALSE); + n1 = n0 + 1; + } + + if (n0 == index->n-1) { + n1 = n0; + n0 = n1 - 1; + } + + float dy = value->data.F32[n1] - value->data.F32[n0]; + float dx = index->data.F32[n1] - index->data.F32[n0]; + float dX = key - index->data.F32[n0]; + float dY = dX * (dy/dx); + float result = value->data.F32[n0] + dY; + return result; +} + Index: /branches/rel-1-1/psModules/src/extras/psVectorBracket.h =================================================================== --- /branches/rel-1-1/psModules/src/extras/psVectorBracket.h (revision 12167) +++ /branches/rel-1-1/psModules/src/extras/psVectorBracket.h (revision 12167) @@ -0,0 +1,22 @@ +/* @file psVectorBracket.h + * @brief vector bracket functions + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2005 Institute for Astronomy, University of Hawaii + */ + +# ifndef PS_VECTOR_BRACKET_H +# define PS_VECTOR_BRACKET_H + +/// @addtogroup Extras Miscellaneous Funtions +/// @{ + +int psVectorBracket(const psVector *index, psF32 key, bool above); +int psVectorBracketDescend(const psVector *index, psF32 key, bool above); +psF32 psVectorInterpolate(const psVector *index, const psVector *value, psF32 key); + +/// @} +# endif /* PS_VECTOR_BRACKET_H */ Index: /branches/rel-1-1/psModules/src/imcombine/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo Index: /branches/rel-1-1/psModules/src/imcombine/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/Makefile.am (revision 12167) @@ -0,0 +1,16 @@ +noinst_LTLIBRARIES = libpsmodulesimcombine.la + +libpsmodulesimcombine_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) +libpsmodulesimcombine_la_LDFLAGS = -release $(PACKAGE_VERSION) + +libpsmodulesimcombine_la_SOURCES = \ + pmReadoutCombine.c \ + pmImageCombine.c +# pmImageSubtract.c + +pkginclude_HEADERS = \ + pmReadoutCombine.h \ + pmImageCombine.h +# pmImageSubtract.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.c =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.c (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.c (revision 12167) @@ -0,0 +1,667 @@ +/** @file pmImageCombine.c + * + * This file will perform image combination of several images of the + * same field, produce a list of questionable pixels, then tag some + * of those pixels as cosmic rays. + * + * @author Paul Price, IfA (original prototype) + * @author GLG, MHPCC + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-16 23:51:51 $ + * + * XXX: pmRejectPixels() has a known bug with the pmImageTransform() call. + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pslib.h" + +#define PIXEL_LIST_BUFFER 100 // Size of the pixel list buffer + +// Data structure for use as a buffer in combining pixels +typedef struct +{ + psVector *pixels; // Pixel values + psVector *masks; // Pixel masks + psVector *errors; // Pixel errors + psStats *stats; // Statistics to use with combination +} +combineBuffer; + +void combineBufferFree(combineBuffer *buffer) +{ + psFree(buffer->pixels); + psFree(buffer->masks); + psFree(buffer->errors); + psFree(buffer->stats); +} + +combineBuffer *combineBufferAlloc(long numImages // Number of images that will be combined + ) +{ + combineBuffer *buffer = psAlloc(sizeof(combineBuffer)); + psMemSetDeallocator(buffer, (psFreeFunc)combineBufferFree); + + buffer->pixels = psVectorAlloc(numImages, PS_TYPE_F32); + buffer->masks = psVectorAlloc(numImages, PS_TYPE_MASK); + buffer->errors = psVectorAlloc(numImages, PS_TYPE_F32); + buffer->stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + + return buffer; +} + + +static bool combinePixels(psImage *combine, // Combined image, for output + psArray *questionablePixels, // Array of rejection masks + int x, int y, // Position in the images + const psArray *images, // Array of input images + const psArray *errors, // Array of input error images + const psArray *masks, // Array of input masks + psU32 maskVal, // Mask value + psS32 numIter, // Number of rejection iterations + psF32 sigmaClip, // Number of standard deviations at which to reject + combineBuffer *buffer // Buffer for combination; to avoid multiple allocations + ) +{ + assert(combine); + assert(x >= 0 && x < combine->numCols); + assert(y >= 0 && y < combine->numRows); + assert(images); + int numImages = images->n; // Number of images to combine + if (masks) { + assert(masks->n == numImages); + } + if (errors) { + assert(errors->n == numImages); + } + assert(numIter >= 0); + assert(sigmaClip > 0); + assert(!questionablePixels || (questionablePixels && questionablePixels->n == numImages)); + + if (buffer) { + psMemIncrRefCounter(buffer); + } else { + buffer = combineBufferAlloc(numImages); + } + + psVector *pixelData = buffer->pixels; // Values for the pixel of interest + psVector *pixelErrors = buffer->errors; // Errors for the pixel of interest + psVector *pixelMasks = buffer->masks; // Masks for the pixel of interest + psStats *stats = buffer->stats; // Statistics for combination + + // + // Loop through each image, extract the pixel/mask/error data into psVectors. + // + if (!masks) { + psVectorInit(pixelMasks, 0); + } + if (!errors) { + pixelErrors = NULL; + } + for (int i = 0; i < numImages; i++) { + // Set the pixel data + psImage *image = images->data[i]; // Image of interest + pixelData->data.F32[i] = image->data.F32[y][x]; + // Set the pixel mask data, if necessary + if (masks) { + psImage *mask = masks->data[i]; // Mask of interest + pixelMasks->data.U8[i] = mask->data.U8[y][x]; + } // Set the pixel error data, if necessary + if (errors) { + psImage *error = errors->data[i]; // Error image of interest + pixelErrors->data.F32[i] = error->data.F32[y][x]; + } + } + + // + // Iterate on the pixels, rejecting outliers + // + for (int iter = 0; iter < numIter; iter++) { + // Combine all the pixels, using the specified stat. + if (!psVectorStats(stats, pixelData, pixelErrors, pixelMasks, maskVal)) { + combine->data.F32[y][x] = NAN; + psFree(buffer); + return false; + } + float combinedPixel = stats->sampleMean; // Value of the combination + + if (iter == 0) { + // Save the value produced with no rejection, since it may be useful later + // (if the rejection turns out to be unnecessary) + combine->data.F32[y][x] = combinedPixel; + } + + // + // Reject all pixels that lie more that sigmaClip standard deviations from + // the combined pixel value. + // + int numRejects = 0; // Number of rejections + float stdev = stats->sampleStdev; + for (int i = 0; i < numImages; i++) { + if (!(pixelMasks->data.U8[i] & maskVal) && + fabs(pixelData->data.F32[i] - combinedPixel) > sigmaClip * stdev) { + // Reject pixel as questionable + numRejects++; + pixelMasks->data.U8[i] = maskVal; + if (questionablePixels) { + // Mark the pixel as questionable + psPixels *qp = questionablePixels->data[i]; // Questionable pixels for this image + int qpNum = qp->n; // Number of QPs in the image of interest + if (qpNum >= qp->nalloc) { + // Grow dynamically, if required + qp = psPixelsRealloc(qp, qp->nalloc + PIXEL_LIST_BUFFER); + questionablePixels->data[i] = qp; + } + qp->data[qpNum].x = x; + qp->data[qpNum].y = y; + qp->n++; + } + } + } + + // + // If the number of rejected pixels is zero, then there's no point continuing the loop. + // + if (numRejects == 0) { + break; + } + + // + // XXX: Is it possible to have all pixels rejected? If so, we should exit the loop. + // + } + + psFree(buffer); + return true; +} + +psImage *pmCombineImages( + psImage *combine, ///< Combined image (output) + psArray **questionablePixels, ///< Array of rejection masks + const psArray *images, ///< Array of input images + const psArray *errors, ///< Array of input error images + const psArray *masks, ///< Array of input masks + psU32 maskVal, ///< Mask value + const psPixels *pixels, ///< Pixels to combine + psS32 numIter, ///< Number of rejection iterations + psF32 sigmaClip ///< Number of standard deviations at which to reject +) +{ + psTrace("psModules.imcombine", 3, "Calling pmCombineImages(%ld)\n", images->n); + + PS_ASSERT_ARRAY_NON_NULL(images, NULL); + PS_ASSERT_INT_POSITIVE(images->n, NULL); + long numImages = images->n; // Number of images + int numCols = ((psImage*)images->data[0])->numCols; // Size in x + int numRows = ((psImage*)images->data[0])->numRows; // Size in y + + if (combine) { + PS_ASSERT_IMAGE_NON_NULL(combine, NULL); + PS_ASSERT_IMAGE_SIZE(combine, numCols, numRows, NULL); + } + if (questionablePixels && !*questionablePixels) { + PS_ASSERT_ARRAY_NON_NULL(*questionablePixels, NULL); + PS_ASSERT_ARRAY_SIZE(*questionablePixels, numImages, 0); + } + for (int i = 1; i < images->n; i++) { + psImage *image = images->data[i]; // Image of interest + PS_ASSERT_IMAGE_TYPE(image, PS_TYPE_F32, NULL); + PS_ASSERT_IMAGE_SIZE(image, numCols, numRows, NULL); + } + if (errors) { + PS_ASSERT_ARRAYS_SIZE_EQUAL(images, errors, NULL); + for (int i = 0; i < images->n; i++) { + psImage *error = errors->data[i]; + PS_ASSERT_IMAGE_SIZE(error, numCols, numRows, NULL); + PS_ASSERT_IMAGE_TYPE(error, PS_TYPE_F32, NULL); + } + } + if (masks) { + PS_ASSERT_ARRAYS_SIZE_EQUAL(images, masks, NULL); + for (int i = 0; i < images->n; i++) { + psImage *mask = masks->data[i]; + PS_ASSERT_IMAGE_SIZE(mask, numCols, numRows, NULL); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_MASK, NULL); + } + } + PS_ASSERT_INT_POSITIVE(numIter, NULL); + PS_ASSERT_FLOAT_LARGER_THAN(sigmaClip, 0.0, NULL); + + // Allocate and initialize the combined image, if necessary. + if (!combine) { + combine = psImageAlloc(numCols, numRows, PS_TYPE_F32); + if (pixels) { + // Set everything we're not working on to NAN + psImageInit(combine, NAN); + } + } + + // + // Allocate the questionablePixels psArray, if necesssary, then create a psPixels + // struct for each image. + // + if (questionablePixels) { + if (*questionablePixels == NULL) { + *questionablePixels = psArrayAlloc(numImages); + } else if ((*questionablePixels)->n != numImages) { + *questionablePixels = psArrayRealloc(*questionablePixels, numImages); + } + for (int i = 0; i < numImages; i++) { + psFree((*questionablePixels)->data[i]); + (*questionablePixels)->data[i] = psPixelsAlloc(PIXEL_LIST_BUFFER); + } + } + + combineBuffer *buffer = combineBufferAlloc(numImages); // Buffer for combination + + if (pixels) { + // Only those specified pixels should be combined. + + for (int p = 0; p < pixels->n; p++) { + int x = pixels->data[p].x; // Column of interest + int y = pixels->data[p].y; // Row of interest + + if (!combinePixels(combine, questionablePixels ? *questionablePixels : NULL, x, y, + images, errors, masks, maskVal, numIter, sigmaClip, buffer)) { + // Bad pixel --- no big deal + psErrorClear(); + } + } + } else { + // + // We get here if there is a NULL list of pixels to combine. + // Therefore, we combine all pixels in all images. + // + + // + // Loop over all pixels in all images, set the appropriate data, mask, + // error vectors, call psVectorStats(), and set the result in the + // combine image. + // + for (int y = 0; y < numRows; y++) { + for (int x = 0; x < numCols; x++) { + if (!combinePixels(combine, questionablePixels ? *questionablePixels : NULL, x, y, + images, errors, masks, maskVal, numIter, sigmaClip, buffer)) { + // Bad pixel --- no big deal + psErrorClear(); + } + } + } + } + + psFree(buffer); + + psTrace("psModules.imcombine", 3, "Exiting pmCombineImages(%ld)\n", images->n); + return combine; +} + + +/****************************************************************************** +XXX: Directly from Paul Price + *****************************************************************************/ +static psF32 CalcGradient( + psImage *image, + psImage *imageMask, + psS32 x, + psS32 y +) +{ + psTrace("psModules.imcombine", 4, "Calling CalcGradient(%d, %d)\n", x, y); + int num = 0; + psVector *pixels = psVectorAlloc(8, PS_TYPE_F32); // Array of pixels + psVector *mask = psVectorAlloc(8, PS_TYPE_U8); // Corresponding mask + + // Get limits + int xMin = PS_MAX(x - 1, 0); + int xMax = PS_MIN(x + 1, image->numCols - 1); + int yMin = PS_MAX(y - 1, 0); + int yMax = PS_MIN(y + 1, image->numRows - 1); + if (imageMask != NULL) { + for (int j = yMin; j <= yMax; j++) { + for (int i = xMin; i <= xMax; i++) { + if ((i != x) && (j != y) && (0 == imageMask->data.U8[j][i])) { + pixels->data.F32[num] = image->data.F32[j][i]; + mask->data.U8[num] = 0; + num++; + } else { + mask->data.U8[num] = 1; + } + } + } + } else { + // + // This code is simply the previous loop without the imageMask. + // XXX: Consider restructuring this. + // + for (int j = yMin; j <= yMax; j++) { + for (int i = xMin; i <= xMax; i++) { + if ((i != x) && (j != y)) { + pixels->data.F32[num] = image->data.F32[j][i]; + mask->data.U8[num] = 0; + num++; + } else { + mask->data.U8[num] = 1; + } + } + } + } + + pixels->n = num; + mask->n = num; + + // Get the median + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEDIAN); + psVectorStats(stats, pixels, NULL, mask, 1); + float median = stats->sampleMedian; + psFree(stats); + psFree(pixels); + psFree(mask); + + psTrace("psModules.imcombine", 4, "Exiting CalcGradient(%d, %d)\n", x, y); + return(median / image->data.F32[y][x]); +} + +/****************************************************************************** +DetermineRegion(image, myOutToIn): for a psImage and a psPlaneTransform to that +image, this routine determines the size of the input image which maps to that +image, and returns the result in a psRegion struct. + +XXX: Basically, this routine is only guaranteed to work if the transform is +linear. + +XXX: Shouldn't this functionality be part of psImageTransform()? + *****************************************************************************/ +static psRegion DetermineRegion(psImage *image, + psPlaneTransform *myOutToIn) +{ + psTrace("psModules.imcombine", 4, "Calling DetermineRegion()\n"); + psRegion myRegion; + myRegion.x0 = PS_MAX_F32; + myRegion.x1 = PS_MIN_F32; + myRegion.y0 = PS_MAX_F32; + myRegion.y1 = PS_MIN_F32; + psPlane in; + psPlane out; + + in.x = 0.0; + in.y = 0.0; + + psPlaneTransformApply(&out, myOutToIn, &in); + if (out.x < myRegion.x0) { + myRegion.x0 = out.x; + } + if (out.x > myRegion.x1) { + myRegion.x1 = out.x; + } + if (out.y < myRegion.y0) { + myRegion.y0 = out.y; + } + if (out.y > myRegion.y1) { + myRegion.y1 = out.y; + } + + in.x = (psF32) (image->numCols); + in.y = 0.0; + psPlaneTransformApply(&out, myOutToIn, &in); + if (out.x < myRegion.x0) { + myRegion.x0 = out.x; + } + if (out.x > myRegion.x1) { + myRegion.x1 = out.x; + } + if (out.y < myRegion.y0) { + myRegion.y0 = out.y; + } + if (out.y > myRegion.y1) { + myRegion.y1 = out.y; + } + + in.x = (psF32) (image->numCols); + ; + in.y = 0.0; + psPlaneTransformApply(&out, myOutToIn, &in); + if (out.x < myRegion.x0) { + myRegion.x0 = out.x; + } + if (out.x > myRegion.x1) { + myRegion.x1 = out.x; + } + if (out.y < myRegion.y0) { + myRegion.y0 = out.y; + } + if (out.y > myRegion.y1) { + myRegion.y1 = out.y; + } + + in.x = (psF32) (image->numCols); + in.y = (psF32) (image->numRows); + psPlaneTransformApply(&out, myOutToIn, &in); + if (out.x < myRegion.x0) { + myRegion.x0 = out.x; + } + if (out.x > myRegion.x1) { + myRegion.x1 = out.x; + } + if (out.y < myRegion.y0) { + myRegion.y0 = out.y; + } + if (out.y > myRegion.y1) { + myRegion.y1 = out.y; + } + + psTrace("psModules.imcombine", 4, "Exiting DetermineRegion()\n"); + return(myRegion); +} + +/****************************************************************************** +XXX: Don't we have a psLib function for this? + *****************************************************************************/ +static psImage *ImageConvertF32(psImage *image) +{ + psTrace("psModules.imcombine", 4, "Calling ImageConvertF32()\n"); + psImage *imgF32 = psImageAlloc(image->numCols, image->numRows, PS_TYPE_F32); + + for (psS32 i = 0 ; i < image->numRows ; i++) { + for (psS32 j = 0 ; j < image->numCols ; j++) { + imgF32->data.F32[i][j] = (psF32) image->data.U8[i][j]; + } + } + + psTrace("psModules.imcombine", 4, "Exiting ImageConvertF32()\n"); + return(imgF32); +} + + +// +// The following macros define how big the initial pixel list will be, and +// how much it should be incremented when realloc'ed. +// +#define PS_REJECT_PIXEL_INITIAL_PIXEL_LIST_LENGTH 100 +#define PS_REJECT_PIXEL_INITIAL_PIXEL_LIST_LENGTH_INC 100 +/****************************************************************************** +pmRejectPixels(images, errors, inToOut, outToIn, rejThreshold, +gradLimit) + +XXX: Optimization: we don't need to transform the entire mask image. +XXX: The inToOut and outToIn transforms are confusing. Verify that what + I think they mean syncs with PWP. + *****************************************************************************/ +psArray *pmRejectPixels( + const psArray *images, ///< Array of input images + const psArray *masks, ///< Array of input image masks + const psArray *errors, ///< The pixels which were rejected in the combination + const psArray *inToOut, ///< Transformation from input to output system + const psArray *outToIn, ///< Transformation from output to input system + psF32 rejThreshold, ///< Rejection threshold + psF32 gradLimit ///< Gradient limit +) +{ + psTrace("psModules.imcombine", 3, "Calling pmRejectPixels()\n"); + PS_ASSERT_PTR_NON_NULL(images, NULL); + for (psS32 im = 0 ; im < images->n ; im++) { + psImage *tmpImage = (psImage *) images->data[im]; + PS_ASSERT_IMAGE_NON_NULL(tmpImage, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(tmpImage, NULL); + PS_ASSERT_IMAGE_TYPE(tmpImage, PS_TYPE_F32, NULL); + if (masks != NULL) { + PS_ASSERT_INT_EQUAL(images->n, masks->n, NULL); + psImage *tmpMask = (psImage *) masks->data[im]; + PS_ASSERT_IMAGE_NON_NULL(tmpMask, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(tmpMask, NULL); + PS_ASSERT_IMAGE_TYPE(tmpMask, PS_TYPE_F32, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(tmpImage, tmpMask, NULL); + } + PS_ASSERT_IMAGES_SIZE_EQUAL(((psImage *) images->data[0]), tmpImage, NULL); + } + PS_ASSERT_PTR_NON_NULL(errors, NULL); + PS_ASSERT_PTR_NON_NULL(inToOut, NULL); + PS_ASSERT_PTR_NON_NULL(outToIn, NULL); + // Ensure that the psArray parameters have an element for each image. + psS32 numImages = images->n; + PS_ASSERT_INT_EQUAL(numImages, errors->n, NULL); + PS_ASSERT_INT_EQUAL(numImages, inToOut->n, NULL); + PS_ASSERT_INT_EQUAL(numImages, outToIn->n, NULL); + + // + // Create the psArray of psPixelLists, one for each image, for rejected pixels. + // + psArray *rejects = psArrayAlloc(numImages); + for (psS32 im = 0 ; im < numImages ; im++) { + rejects->data[im] = (psPtr *) psPixelsAlloc(PS_REJECT_PIXEL_INITIAL_PIXEL_LIST_LENGTH); + ((psPixels *)(rejects->data[im]))->n = ((psPixels *)(rejects->data[im]))->nalloc; + psPixels *pixels = (psPixels *) rejects->data[im]; + pixels->n = 0; + } + // + // rPtr is used to maintain a count of the questionable pixels for each image. + // + psVector *rPtr = psVectorAlloc(numImages, PS_TYPE_S32); + psVectorInit(rPtr, 0); + + psS32 numCols = ((psImage *) images->data[0])->numCols; + psS32 numRows = ((psImage *) images->data[0])->numRows; + psRegion myRegion = psRegionSet(0, numCols-1, 0, numRows-1); + psU32 maskVal = 1; // XXX: Is this appropriate? + + psPlane *inCoords = psAlloc(sizeof(psPlane)); + psPlane *outCoords = psAlloc(sizeof(psPlane)); + + for (psS32 im = 0 ; im < numImages ; im++) { + // + // Extract data from psArrays. + // + psPixels *pixelList = (psPixels *) errors->data[im]; + + psImage *currImage = (psImage *) images->data[im]; + myRegion.x0 = 0; + myRegion.x1 = currImage->numCols; + myRegion.y0 = 0; + myRegion.y1 = currImage->numRows; + psPlaneTransform *myInToOut = (psPlaneTransform *) inToOut->data[im]; + psPlaneTransform *myOutToIn = (psPlaneTransform *) outToIn->data[im]; + + // + // Create a psU8 mask image from the list of cosmic pixels. + // + psImage *maskImage = NULL; + maskImage = psPixelsToMask(maskImage, pixelList, myRegion, maskVal); + psImage *maskImageF32 = ImageConvertF32(maskImage); + + // + // Transform that mask image into detector coordinate space + // + psRegion myRegionXForm = DetermineRegion(maskImageF32, myOutToIn); + psImage *transformedImage = psImageTransform(NULL, NULL, maskImageF32, NULL, + 0, myOutToIn, myRegionXForm, NULL, + PS_INTERPOLATE_BILINEAR, 0); + + // + // Loop over all cosmic pixels. Transform their coords to detector space. + // If the value of the transformed mask is larger than rejThreshold, then + // this might be a cosmic ray pixel. We then calculate the mean gradient + // in other images. + // + for (psS32 p = 0 ; p < pixelList->n ; p++) { + inCoords->x = 0.5 + (psF32) (pixelList->data[p]).x; + inCoords->y = 0.5 + (psF32) (pixelList->data[p]).y; + psPlaneTransformApply(outCoords, myInToOut, inCoords); + psF32 maskVal = (psF32) psImagePixelInterpolate(transformedImage, outCoords->x, outCoords->y, + NULL, 0, 0.0, PS_INTERPOLATE_BILINEAR); + if (maskVal > rejThreshold) { + + // This is a possible cosmic array pixel. We must calculate the gradient + // at this location in all input images. + psF32 meanGrads = 0.0; + psS32 numGrads = 0; + // + // Loop through all other images, calculate their mean gradient. + // + for (psS32 otherImg = 0 ; otherImg < numImages ; otherImg++) { + if (im != otherImg) { + // Map the outCoords to inCoords that for otherImg space. + psImage *tmpMask = NULL; + if (masks != NULL) { + tmpMask = masks->data[otherImg]; + } + psPlaneTransformApply(inCoords, + (psPlaneTransform * )outToIn->data[otherImg], + outCoords); + psS32 xPix = (int)(inCoords->x + 0.5); + psS32 yPix = (int)(inCoords->y + 0.5); + if ((xPix >= 0) && (xPix <= ((psImage*)(images->data[otherImg]))->numCols - 1) && + (yPix >= 0) && (yPix <= ((psImage*)(images->data[otherImg]))->numRows - 1)) { + meanGrads += CalcGradient(images->data[otherImg], tmpMask, xPix, yPix); + numGrads++; + } + } + } + if (numGrads > 0) { + meanGrads /= (psF32) numGrads; + } else { + // XXX: my idea. Verify with PWP: + meanGrads = 1.0 + gradLimit; + } + + // XXX: The SDRS and the prototype code differ significantly here: + // if (CalcGradient(inputs->data[i], pixelList->data.x, pixelList->data.y) < (gradLimit * meanGrads)) { + if (meanGrads < gradLimit) { + // + // Add this to the list of questionable pixels. We must ensure that the + // pixelList is large enough; if not, we realloc() + // + psS32 ptr = rPtr->data.S32[im]; + psPixels *pixelListPtr = (psPixels *) rejects->data[im]; + if (ptr >= pixelListPtr->nalloc) { + rejects->data[im] = (psPtr *) psPixelsRealloc(((psPixels *) rejects->data[im]), + ((((psPixels *) rejects->data[im])->nalloc) + PS_REJECT_PIXEL_INITIAL_PIXEL_LIST_LENGTH_INC)); + // XXX: Can the realloc() fail? Must we check for NULL? + } + + ((psPixels *) rejects->data[im])->data[ptr].x = (pixelList->data[p]).x; + ((psPixels *) rejects->data[im])->data[ptr].y = (pixelList->data[p]).y; + (rPtr->data.S32[im])++; + // XXX: this pixel ->n increment is wierd + (((psPixels *) rejects->data[im])->n)++; + } + } + } + + psFree(maskImage); + psFree(maskImageF32); + psFree(transformedImage); + } + + psFree(inCoords); + psFree(outCoords); + psTrace("psModules.imcombine", 3, "Exiting pmRejectPixels()\n"); + return(rejects); +} Index: /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.h =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.h (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmImageCombine.h (revision 12167) @@ -0,0 +1,48 @@ +/* @file pmImageCombine.h + * + * This file will perform image combination of several images of the + * same field, produce a list of questionable pixels, then tag some + * of those pixels as cosmic rays. + * + * @author Paul Price, IfA (original prototype) + * @author GLG, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PM_IMAGE_COMBINE_H +#define PM_IMAGE_COMBINE_H + +/// @addtogroup imcombine Image Combinations +/// @{ + +#include +#include +#include + +psImage *pmCombineImages( + psImage *combine, ///< Combined image (output) + psArray **questionablePixels, ///< Array of rejection masks + const psArray *images, ///< Array of input images + const psArray *errors, ///< Array of input error images + const psArray *masks, ///< Array of input masks + psU32 maskVal, ///< Mask value + const psPixels *pixels, ///< Pixels to combine + psS32 numIter, ///< Number of rejection iterations + psF32 sigmaClip ///< Number of standard deviations at which to reject +); + +psArray *pmRejectPixels( + const psArray *images, ///< Array of input images + const psArray *masks, ///< Array of input image masks + const psArray *errors, ///< The pixels which were rejected in the combination + const psArray *inToOut, ///< Transformation from input to output system + const psArray *outToIn, ///< Transformation from output to input system + psF32 rejThreshold, ///< Rejection threshold + psF32 gradLimit ///< Gradient limit +); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.c =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.c (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.c (revision 12167) @@ -0,0 +1,1393 @@ +/** @file ImageSubtract.c + * + * This file will contain code which creates a set of kernel basis + * functions, solves for their solution, and applies them to an image. + * + * @author Paul Price, IfA (original prototype) + * @author GLG, MHPCC + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-10-24 22:55:05 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + * XXX: sync with IfA on this: + * The (x, y) (row, col) issue is becoming a problem. In this file, and I + * think, the rest of psLib and psModules, the following conventions are used: + * + * 1) x will correspond to the column, and y will correspond to the row. + * 2) When used in function prototypes, the column (and hence x) appears + * first. + * 3) When used to index 2-D arrays, obviously, the row (and hence, y) + * appears first. (2 and 3 are the source of confusion). + * 4) When (u, v) are used in certain structures. + * u corresponds to x + * v corresponds to y + * 5) When element (a, b) is casually referred to in comments, or + * documentation it is unclear where a is the row, or the column. + * 6) A convention on loop index variables (i, j) would be convenient. + * Currently, sometimes i corresponds to the column (x), + * usually it corresponds to the row (y). + * + * XXX: The following variables are used an interpreted this way: + * kernelSize: Means that the actual kernel is a square (1 + 2 * kernelSize) per side. + * border: When accessing an image, a swath of pixels this wide is ignored. + * footprint: When accessing a stample, a square of pixels, footprint pixels per side, + * are looked at. We must ensure that (footprint+kernelSize) pixels exist + * around the center. + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pmImageSubtract.h" + +/******************************************************************************* + Private alloc/free functions. +XXX: It's not clear if the SubtractionKernels alloc/free functions are feasable. + ******************************************************************************/ +void p_pmStampFree(pmStamp *stamp) +{ + psFree(stamp->matrix); + psFree(stamp->vector); +} + +pmStamp *p_pmStampAlloc(pmStampStatus status) +{ + pmStamp *stamp = (pmStamp*)psAlloc(sizeof(pmStamp)); + stamp->x = 0; + stamp->p_xSize = 0; + stamp->y = 0; + stamp->p_ySize = 0; + stamp->matrix = NULL; + stamp->vector = NULL; + stamp->status = status; + + psMemSetDeallocator(stamp, (psFreeFunc)p_pmStampFree); + + return(stamp); +} + +void p_pmSubtractionKernelsFree(psSubtractionKernels *kernels) +{ + psFree(kernels->u); + psFree(kernels->v); + psFree(kernels->sigma); + psFree(kernels->xOrder); + psFree(kernels->yOrder); + psFree(kernels->preCalc); + + psFree(kernels); +} + +psSubtractionKernels *p_pmSubtractionKernelsAlloc(int numBasisFunctions, + pmSubtractionKernelsType type) +{ + psSubtractionKernels *tmp = (psSubtractionKernels *) psAlloc(sizeof(psSubtractionKernels)); + + tmp->type = type; + psMemSetDeallocator(tmp, (psFreeFunc) p_pmSubtractionKernelsFree); + return(tmp); +} + +/******************************************************************************* +psSubtractionKernels struct. + ******************************************************************************/ +psSubtractionKernels *pmSubtractionKernelsAllocPOIS(int size, + int spatialOrder) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionKernelsAllocPOIS(%d, %d)\n", size, spatialOrder); + PS_ASSERT_INT_POSITIVE(size, NULL); + PS_ASSERT_INT_POSITIVE(spatialOrder, NULL); + // + // Calculate the number of basis functions (nBF) + // + psS32 xKernelHalfSize = size; + psS32 yKernelHalfSize = size; + psS32 nBF = (2 * xKernelHalfSize + 1) * + (2 * yKernelHalfSize + 1) * + (spatialOrder + 1) * + (spatialOrder + 2) / 2; + + // + // Generate the new psSubtractionKernels data structure: + // + psSubtractionKernels *tmp = (psSubtractionKernels *) psAlloc(sizeof(psSubtractionKernels)); + tmp->type = PM_SUBTRACTION_KERNEL_POIS; + tmp->u = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->v = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->sigma = NULL; + tmp->xOrder = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->yOrder = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->subIndex = 0; + tmp->preCalc = NULL; + tmp->size = size; + tmp->spatialOrder = spatialOrder; + + // + // This corresponds to the Kernel Basis Function with (u, v) = (0, 0) + // + // Put the (u,v) = (0,0) component right at the start of the list + // for convenience. + // + psS32 ptr = 0; + for (psS32 order = 0; order <= spatialOrder; order++) { + for (psS32 xOrder = 0; xOrder <= order; xOrder++) { + psS32 yOrder = order - xOrder; + tmp->u->data.F32[ptr] = 0; + tmp->v->data.F32[ptr] = 0; + tmp->xOrder->data.F32[ptr] = xOrder; + tmp->yOrder->data.F32[ptr] = yOrder; + ptr++; + } + } + + // + // Iterate over (u,v). Generate a set of kernels for each (u, v). + // + for (psS32 v = -yKernelHalfSize; v <= yKernelHalfSize; v++) { + for (psS32 u = -xKernelHalfSize; u <= xKernelHalfSize; u++) { + // Already did (u,v) = (0,0): it's at the start, so skip it now. + if ((u != 0) || (v != 0)) { + // + // Iterate over spatial order. This loop creates the terms for + // x^xOrder * y^yOrder such that (xOrder+yOrder) <= spatialOrder. + // + for (psS32 order = 0; order <= spatialOrder; order++) { + for (psS32 xOrder = 0; xOrder <= order; xOrder++) { + psS32 yOrder = order - xOrder; + tmp->u->data.F32[ptr] = u; + tmp->v->data.F32[ptr] = v; + tmp->xOrder->data.F32[ptr] = xOrder; + tmp->yOrder->data.F32[ptr] = yOrder; + ptr++; + } + } + } + } + } + + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionKernelsAllocPOIS(%d, %d)\n", size, spatialOrder); + return(tmp); +} + +/******************************************************************************* +XXX: Get the types correct (u, v, xOrder, yOrder). + +XXX: Code review this. + ******************************************************************************/ +psSubtractionKernels *pmSubtractionKernelsAllocISIS(const psVector *sigmas, + const psVector *orders, + int size, + int spatialOrder) +{ + PS_ASSERT_VECTOR_NON_NULL(sigmas, NULL); + PS_ASSERT_VECTOR_NON_NULL(orders, NULL); + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionKernelsAllocISIS(%ld, %ld, %d, %d)\n", + sigmas->n, orders->n, size, spatialOrder); + PS_ASSERT_INT_POSITIVE(size, NULL); + PS_ASSERT_INT_POSITIVE(spatialOrder, NULL); + PS_ASSERT_VECTOR_TYPE(sigmas, PS_TYPE_F32, NULL); + PS_ASSERT_VECTOR_TYPE(orders, PS_TYPE_S32, NULL); + // + // Calculate the number of basis functions (nBF). + // + psS32 numSigmas = sigmas->n; + + // XXX: Get rid of the sigma loop? We merely multiple nBF by numSigmas? + // XXX: Verify that all this is correct. + psS32 nBF = 0; + for (psS32 s = 0 ; s < numSigmas ; s++) { + for (psS32 o = 0 ; o < orders->n ; o++) { + nBF+=((orders->data.S32[o] + 1) * (orders->data.S32[o] + 2) / 2); + } + } + nBF*= ((spatialOrder + 1) * (spatialOrder + 2) / 2); + + // + // Generate the new psSubtractionKernels data structure: + // + psSubtractionKernels *tmp = (psSubtractionKernels *) psAlloc(sizeof(psSubtractionKernels)); + tmp->type = PM_SUBTRACTION_KERNEL_ISIS; + tmp->u = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->v = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->sigma = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->xOrder = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->yOrder = psVectorAlloc(nBF, PS_TYPE_F32); + tmp->subIndex = 0; + tmp->size = size; + tmp->spatialOrder = spatialOrder; + tmp->preCalc = psArrayAlloc(nBF); + + // + // We loop through all combinations of sigmas and polynomial orders + // creating the kernel basis functions. + // + psS32 ptr = 0; + for (psS32 sigPtr = 0 ; sigPtr < numSigmas ; sigPtr++) { + tmp->sigma->data.F32[sigPtr] = sigmas->data.F32[sigPtr]; + // + // (xOrderP, yOrderP) are the order of the polynomial that modify the + // gaussian in the kernel. They correspond to (j, k) in equation (5) + // from the psModules SDRS. + // + for (psS32 o = 0 ; o < orders->n ; o++) { + for (psS32 orderP = 0 ; orderP <= orders->data.S32[o] ; orderP++) { + for (psS32 xOrderP = 0 ; xOrderP <= orderP ; xOrderP++) { + psS32 yOrderP = orderP - xOrderP; + + psImage *currPreCalc = psImageAlloc(1 + (2 * size), 1 + (2 * size), PS_TYPE_F32); + psImageInit(currPreCalc, 0.0); + psBool setPreCalc = true; + // + // We loop through all spatial orders. Since they have no effect on + // the preCalc images, we only calculate them once, and store pointers + // in tmp->preCalc->data[ptr] for other spatial orders. + // + for (psS32 order = 0; order <= spatialOrder; order++) { + for (psS32 orderXTerm = 0; orderXTerm <= order; orderXTerm++) { + PS_ASSERT_INT_LESS_THAN(ptr, nBF, NULL); + + psS32 orderYTerm = order - orderXTerm; + + tmp->u->data.F32[ptr] = xOrderP; + tmp->v->data.F32[ptr] = yOrderP; + tmp->xOrder->data.F32[ptr] = orderXTerm; + tmp->yOrder->data.F32[ptr] = orderYTerm; + tmp->sigma->data.F32[ptr] = sigmas->data.F32[sigPtr]; + tmp->preCalc->data[ptr] = (psPtr *) currPreCalc; + + // + // We calculate the preCalc image only the first time through + // this loop. Otherwise, we increment the memory reference + // counter. + // + if (setPreCalc == true) { + for (psS32 v = -size; v <= size; v++) { + for (psS32 u = -size; u <= size; u++) { + // Scale the (u,v) coordinates in kernel space to [-1.0:1.0]. + psF32 uScaled = ((psF32) u) / ((psF32) size); + psF32 vScaled = ((psF32) v) / ((psF32) size); + + // Compute the value of the kernel at location (u, v): + psF32 exponent = (PS_SQR(uScaled) + PS_SQR(vScaled)) / + (2.0 * PS_SQR(sigmas->data.F32[sigPtr])); + currPreCalc->data.F32[v+size][u+size] = + exp(-exponent) * + pow(uScaled, orderXTerm) * + pow(vScaled, orderYTerm); + } + } + setPreCalc = false; + } else { + psMemIncrRefCounter(currPreCalc); + } + ptr++; + } + } + } + } + } + } + + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionKernelsAllocISIS(%ld, %ld, %d, %d)\n", + sigmas->n, orders->n, size, spatialOrder); + return(tmp); +} + +/******************************************************************************* +pmSubtractionFindStamps(stamps, image, mask, maskVal, threshold, xNum, yNum, border) + +XXX: The SDRS and the proptotype code differ significantly. + Prototype: When a maximum pixel is found within a stamp, an area of size + 2*footprint is searched around that pixel looking for masked pixels. + SDRS: none of that is required. + +XXX: Do we need to care about case where yNum/xNum does not evenly divide the +nnumber of rows/columns in the image? + ******************************************************************************/ +psArray *pmSubtractionFindStamps(psArray *stamps, ///< Output stamps, or NULL + const psImage *image, ///< Image for which to find stamps + const psImage *mask, ///< Mask + psU32 maskVal, ///< Value for mask + psF32 threshold, ///< Threshold for stamps in the image + psS32 xNum, ///< Number of stamps in x + psS32 yNum, ///< Number of stamps in y + psS32 border ///< Border around image to ignore (should be size of kernel or larger) + ) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionFindStamps(%d, %f, %d, %d, %d)\n", + maskVal, threshold, xNum, yNum, border); + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(image, NULL); + PS_ASSERT_IMAGE_TYPE(image, PS_TYPE_F32, NULL); + if (mask != NULL) { + PS_ASSERT_IMAGES_SIZE_EQUAL(image, mask, NULL); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, NULL); + } + PS_ASSERT_INT_POSITIVE(xNum, NULL); + PS_ASSERT_INT_POSITIVE(yNum, NULL); + PS_ASSERT_INT_POSITIVE(border, NULL); + PS_ASSERT_INT_LARGER_THAN(image->numCols, xNum, NULL); + PS_ASSERT_INT_LARGER_THAN(image->numRows, yNum, NULL); + PS_ASSERT_INT_LARGER_THAN(image->numCols, (2 * border), NULL); + PS_ASSERT_INT_LARGER_THAN(image->numRows, (2 * border), NULL); + + if (stamps != NULL) { + PS_ASSERT_INT_EQUAL(stamps->n, (xNum * yNum), NULL); + // + // Ensure that a pmStamp struct exists at each psArray location. + // + for (psS32 s = 0 ; s < (xNum * yNum) ; s++) { + if (NULL == stamps->data[s]) { + stamps->data[s] = (psPtr *) p_pmStampAlloc(PM_STAMP_REJECTED); + } + } + } else { + stamps = (psArray *) psArrayAlloc(xNum * yNum); + for (psS32 s = 0 ; s < (xNum * yNum) ; s++) { + stamps->data[s] = (psPtr *) p_pmStampAlloc(PM_STAMP_REJECTED); + } + } + psS32 numRows = image->numRows; + psS32 numCols = image->numCols; + + // + // Iterate over the image sections + // + // XXX: Must handle cases where image size is not an even multiple of xNum or yNum + // they are currently ignored. + // + psS32 num = 0; + for (psS32 j = 0; j < yNum; j++) { + for (psS32 i = 0; i < xNum; i++) { + pmStamp *stamp = (pmStamp *) stamps->data[num]; + // + // Only find a new stamp if we need to + // + if (stamp->status == PM_STAMP_REJECTED) { + // + // Find maximum non-masked value in the image section, + // but don't include a footprint around the edge + // + psF32 max = -INFINITY; + psS32 bestx = 0; + psS32 besty = 0; + // + // The following nested loop iterates over every pixel in the mask + // associated with this (i, j). It ignores pixels within a + // border of pixels from the image edge. + // + // XXX: verify (numX, numY), then get rid of it. + // + psS32 numX = xNum; + psS32 numY = yNum; + psS32 yMin = border + j * (numCols - 2.0 * border) / numY; + psS32 yMax = (border + (j + 1) * (numCols - 2.0 * border) / numY) - 1; + psS32 xMin = border + i * (numRows - 2.0 * border) / numX; + psS32 xMax = (border + (i + 1) * (numRows - 2.0 * border) / numX) - 1; + + if ((yMax >= image->numRows) || + (xMax >= image->numCols) || + (yMin < 0) || + (xMin < 0)) { + // XXX: We skip this stamp since its borders extends beyond the image. + // XXX: This is here mainly as a safeguard. We need to redefine the above + // min/max pixels calculation to ensure that all stamps are legitimate. + + stamp->x = -1; + stamp->y = -1; + stamp->status = PM_STAMP_NONE; + } else { + stamp->p_xSize = 1 + (xMax - xMin); + stamp->p_ySize = 1 + (yMax - yMin); + stamp->p_xMin = xMin; + stamp->p_xMax = xMax; + stamp->p_yMin = yMin; + stamp->p_yMax = yMax; + + for (psS32 y = yMin; y <= yMax ; y++) { + for (psS32 x = xMin; x <= xMax ; x++) { + // Determine if this pixel is larger than the max, and unmasked. + if (image->data.F32[y][x] > max) { + if ((mask == NULL) || !((mask->data.U8[y][x]) & maskVal)) { + max = image->data.F32[y][x]; + bestx = x; + besty = y; + } + } + } + } + + // + // If the max pixel is larger than the threshold, we keep this stamp. + // Otherwise, mark the stamp as PM_STAMP_NONE + // + if (image->data.F32[besty][bestx] >= threshold) { + stamp->x = bestx; + stamp->y = besty; + stamp->status = PM_STAMP_RECALC; + } else { + stamp->x = bestx; + stamp->y = besty; + stamp->status = PM_STAMP_NONE; + } + } + } + num++; + } + } + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionFindStamps(%d, %f, %d, %d, %d)\n", + maskVal, threshold, xNum, yNum, border); + return(stamps); +} + +/******************************************************************************* +GenSpatialOrder(spatialOrder, x, y): generates and returns a psImage in which +the [i][j] location is calculated as (x^i * y^j). + +XXX: Modify loop so that terms higher than spatialOrder are not computed. + +XXX: Modify this so that [i][j] location is calculated as (x^j * y^i)? + ******************************************************************************/ +static psImage *GenSpatialOrder(psS32 spatialOrder, + psF32 x, + psF32 y) +{ + psTrace("psModules.imcombine", 4, + "Calling GenSpatialOrder(%d, %f, %f)\n", spatialOrder, x, y); + + psImage *polyValues = psImageAlloc(spatialOrder+1, spatialOrder+1, PS_TYPE_F64); + + psF64 xSum = 1.0; + psF64 ySum = 1.0; + for (psS32 i = 0; i < spatialOrder + 1; i++) { + ySum = xSum; + for (psS32 j = 0; j < spatialOrder + 1; j++) { + polyValues->data.F64[i][j] = ySum; + ySum*= y; + } + xSum*= x; + } + + psTrace("psModules.imcombine", 4, + "Exiting GenSpatialOrder(%d, %f, %f)\n", spatialOrder, x, y); + + return(polyValues); +} + + +/******************************************************************************* +IsisKernelConvolve(input, kernels, kernelID, col, row): This routine +convolves a single kernel basis function with a pixel in an image. + ******************************************************************************/ +static psF32 IsisKernelConvolve(const psImage *input, + const psSubtractionKernels *kernels, + psS32 kernelID, + psS32 col, + psS32 row) +{ + + + psTrace("psModules.imcombine", 4, + "Calling IsisKernelConvolve(%d, %d, %d)\n", kernelID, col, row); + psS32 spatialOrder = kernels->spatialOrder; + psS32 kernelSize = kernels->size; + psS32 xOrder = (psS32) kernels->xOrder->data.F32[kernelID]; + psS32 yOrder = (psS32) kernels->yOrder->data.F32[kernelID]; + psF32 numColsHalf = 0.5 * (psF32) input->numCols; + psF32 numRowsHalf = 0.5 * (psF32) input->numRows; + psF32 imageX = (((psF32) col) - numColsHalf) / numColsHalf; // Normalised position + psF32 imageY = (((psF32) row) - numRowsHalf) / numRowsHalf; // Normalised position + + psImage *polyValues = GenSpatialOrder(spatialOrder, imageX, imageY); + + psF64 polyVal = polyValues->data.F64[yOrder][xOrder]; + + psImage *preCalc = (psImage *) kernels->preCalc->data[kernelID]; + + // XXX: Are the following asserts really necessary? + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(row-kernelSize, 0, NAN); + PS_ASSERT_INT_LESS_THAN(row+kernelSize, input->numRows, NAN); + PS_ASSERT_INT_LARGER_THAN_OR_EQUAL(col-kernelSize, 0, NAN); + PS_ASSERT_INT_LESS_THAN(col+kernelSize, input->numCols, NAN); + psF32 conv = 0.0; + for (psS32 yy = -kernelSize ; yy < kernelSize ; yy++) { + for (psS32 xx = -kernelSize ; xx < kernelSize ; xx++) { + conv += input->data.F32[yy+row][xx+col] * + preCalc->data.F32[yy+kernelSize][xx+kernelSize] * + polyVal; + } + } + psFree(polyValues); + + psTrace("psModules.imcombine", 4, + "Exiting IsisKernelConvolve(%d, %d, %d)\n", kernelID, col, row); + return(conv); +} + +/******************************************************************************* +ConvolvePixelPois(input, mask, badStampMaskVal, solution, kernels, col, row): + +This routine takes a single pixel in the psImage input and convolves it with +the set of kernel basis functions and their appropriate weights in solution. +It returns the value of the convolved pixel. + +XXX: Static structure for polyValues? + ******************************************************************************/ +static psF32 ConvolvePixelPois(const psImage *input, + const psImage *mask, + psU32 badStampMaskVal, + const psVector *solution, + const psSubtractionKernels *kernels, + psS32 col, + psS32 row) +{ + psTrace("psModules.imcombine", 4, + "Calling ConvolvePixelPois(%d, %d)\n", col, row); + psS32 nBF = kernels->u->n; + psF32 numColsHalf = 0.5 * (psF32) input->numCols; + psF32 numRowsHalf = 0.5 * (psF32) input->numRows; + psF32 background = solution->data.F64[solution->n-1]; + psS32 spatialOrder = kernels->spatialOrder; + psF32 conv = background; // Initial convolved value + + if ((mask == NULL) || !(mask->data.U8[row][col] & badStampMaskVal)) { + psF32 imageX = (((psF32) col) - numColsHalf) / numColsHalf; // Normalised position + psF32 imageY = (((psF32) row) - numRowsHalf) / numRowsHalf; // Normalised position + psImage *polyValues = GenSpatialOrder(spatialOrder, imageX, imageY); + + // Iterate over the kernel basis functions + for (psS32 k = 0; k < nBF; k++) { + psS32 u = (psS32) kernels->u->data.F32[k]; + psS32 v = (psS32) kernels->v->data.F32[k]; + + // XXX: What's the story with this? + #if 0 + + psS32 xOrder = (psS32) kernels->xOrder->data.F32[k]; + psS32 yOrder = (psS32) kernels->yOrder->data.F32[k]; + psF64 polyVal = polyValues->data.F64[yOrder][xOrder]; + #else + + psF32 polyVal = 1.0; + #endif + + // XXX: Why this? + if (k == 0) { + conv += solution->data.F64[k] * input->data.F32[row - v][col - u] * polyVal; + } else { + conv += solution->data.F64[k] * + (input->data.F32[row - v][col - u] * polyVal - input->data.F32[row][col]); + } + } + psFree(polyValues); + } + + psTrace("psModules.imcombine", 4, + "Exiting ConvolvePixelPois(%d, %d)\n", col, row); + return(conv); +} + + + +/******************************************************************************* +ConvolvePixelIsis(input, mask, badStampMaskVal, solution, kernels, col, row): + +This routine takes a single pixel in the psImage input and convolves it with +the set of kernel basis functions and their appropriate weights in solution. +It returns the value of the convolved pixel. + +XXX: Static structure for polyValues? + ******************************************************************************/ +static psF32 ConvolvePixelIsis(const psImage *input, + const psImage *mask, + psU32 badStampMaskVal, + const psVector *solution, + const psSubtractionKernels *kernels, + psS32 col, + psS32 row) +{ + psTrace("psModules.imcombine", 4, + "Calling ConvolvePixelIsis(%d, %d)\n", col, row); + psF32 background = solution->data.F64[solution->n-1]; + psF32 conv = background; // Initial convolved value + + if ((mask == NULL) || !(mask->data.U8[row][col] & badStampMaskVal)) { + // Iterate over the kernel basis functions + for (psS32 k = 0; k < kernels->u->n; k++) { + conv += IsisKernelConvolve(input, kernels, k, col, row); + } + } + + psTrace("psModules.imcombine", 4, + "Exiting ConvolvePixelIsis(%d, %d)\n", col, row); + return(conv); +} + +/******************************************************************************* +ConvolveImage(input, mask, badStampMaskVal, solution, kernels): convolves an +arbitrary image with either an ISIS or POIS set of kernel basis functions. + ******************************************************************************/ +static psImage *ConvolveImage(const psImage *input, + const psImage *mask, + psU32 badStampMaskVal, + const psVector *solution, + const psSubtractionKernels *kernels) +{ + psTrace("psModules.imcombine", 4, "Calling ConvolveImage()\n"); + PS_ASSERT_IMAGE_NON_NULL(input, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(input, NULL); + PS_ASSERT_IMAGE_TYPE(input, PS_TYPE_F32, NULL); + if (mask != NULL) { + PS_ASSERT_IMAGES_SIZE_EQUAL(input, mask, NULL); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, NULL); + } + PS_ASSERT_VECTOR_NON_NULL(solution, NULL); + PS_ASSERT_VECTOR_TYPE(solution, PS_TYPE_F64, NULL); + PS_ASSERT_PTR_NON_NULL(kernels, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->v, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->xOrder, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->yOrder, NULL); + if (kernels->preCalc != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->preCalc, NULL); + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_POIS) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Unallowable operation: kernels->preCalc == NULL and kernels->type != PM_SUBTRACTION_KERNEL_POIS.\n"); + return(NULL); + } + } + psS32 nBF = kernels->u->n; + PS_ASSERT_VECTOR_SIZE(solution, (long)nBF+1, NULL); + + psS32 numCols = input->numCols; + psS32 numRows = input->numRows; + psS32 kernelSize = kernels->size; + + psImage *convolved = psImageAlloc(numCols, numRows, PS_TYPE_F32); + + for (psS32 y = kernelSize; y < numRows - kernelSize; y++) { + for (psS32 x = kernelSize; x < numCols - kernelSize; x++) { + if (kernels->type == PM_SUBTRACTION_KERNEL_POIS) { + convolved->data.F32[y][x] = ConvolvePixelPois(input, mask, badStampMaskVal, + solution, kernels, x, y); + } else if (kernels->type == PM_SUBTRACTION_KERNEL_ISIS) { + convolved->data.F32[y][x] = ConvolvePixelIsis(input, mask, badStampMaskVal, + solution, kernels, x, y); + } else { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: unknown kernel type. Returning NULL\n"); + return(NULL); + } + } + } + + // + // Pad the rest of the convolved image with 0.0 + // + for (psS32 y = kernelSize; y < numRows - kernelSize; y++) { + for (psS32 x = 0; x < kernelSize; x++) { + convolved->data.F32[y][x] = 0.0; + } + for (psS32 x = numCols - kernelSize; x < numCols; x++) { + convolved->data.F32[y][x] = 0.0; + } + } + for (psS32 y = 0; y < kernelSize; y++) { + for (psS32 x = 0; x < numCols; x++) { + convolved->data.F32[y][x] = 0.0; + } + } + for (psS32 y = numRows - kernelSize; y < numRows; y++) { + for (psS32 x = 0; x < numCols; x++) { + convolved->data.F32[y][x] = 0.0; + } + } + + psTrace("psModules.imcombine", 4, "Exiting ConvolveImage()\n"); + return convolved; +} + + + + + +/******************************************************************************* +XXX: We should assert that the (footprint, kernelSize, imageSize) stuff +ensures that all data is accessed in bounds? + ******************************************************************************/ +bool pmSubtractionCalculateEquation(psArray *stamps, ///< The stamps for which to calculate the equation, + const psImage *reference, ///< Reference image + const psImage *input, ///< Input image + const psSubtractionKernels *kernels, ///< The kernel basis functions + psS32 footprint ///< Half-size of region over which to calculate equation + ) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionCalculateEquation()\n"); + PS_ASSERT_PTR_NON_NULL(stamps, false); + PS_ASSERT_IMAGE_NON_NULL(reference, false); + PS_ASSERT_IMAGE_NON_EMPTY(reference, false); + PS_ASSERT_IMAGE_NON_NULL(input, false); + PS_ASSERT_IMAGE_NON_EMPTY(input, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(reference, input, false); + PS_ASSERT_PTR_NON_NULL(kernels, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->v, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->xOrder, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->yOrder, false); + if (kernels->type == PM_SUBTRACTION_KERNEL_ISIS) { + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->preCalc, false); + } + psS32 kernelSize = kernels->size; + PS_ASSERT_INT_NONNEGATIVE(footprint, false); + // + // For each legitimate stamp, ensure that the footprint is small enough to perform + // the full calculation. + // + // XXX: Verify with IfA that this is a reasonable action. + // + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + if (stamp->status == PM_STAMP_RECALC) { + // XXX: trace message + // printf("stamp %d (x, y) is (%d, %d). Footprint is %d. kernelSize is %d.\n", s, stamp->x, stamp->y, footprint, kernelSize); + if (((stamp->y - (footprint + kernelSize)) < 0) || + ((stamp->x - (footprint + kernelSize)) < 0) || + ((stamp->y + footprint + kernelSize) >= input->numRows) || + ((stamp->x + footprint + kernelSize) >= input->numCols)) { + stamp->status = PM_STAMP_NONE; + psLogMsg(__func__, PS_LOG_WARN, + "WARNING: stamp %d will be ignored. It exceeds image size: access columns (%d to %d) and rows (%d to %d)\n", + s, + stamp->x - (footprint + kernelSize), + (stamp->x + footprint + kernelSize) - 1, + stamp->y - (footprint + kernelSize), + (stamp->y + footprint + kernelSize) - 1); + } + } + } + + psS32 numHalfRows = reference->numRows; + psS32 numHalfCols = reference->numCols; + psS32 spatialOrder = kernels->spatialOrder; + + // + // The numSolveParams incorporates the additional parameter for the + // background value, which we must solve for. + // + psS32 numKernels = kernels->u->n; + int numSolveParams = numKernels + 1; + int bgIndex = numKernels; // Index in matrix for the background + + // + // We iterate over each stamp, allocate the matrix and vectors if + // necessary, and then calculate those matrix/vectors. + // + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + psTrace("psModules.imcombine", 6, "subCalcEqn(): stamp %d\n", s); + if (stamp->status == PM_STAMP_RECALC) { + psTrace("psModules.imcombine", 6, "subCalcEqn(): stamp %d: status is PM_STAMP_RECALC.\n", s); + psImage *stampMatrix = stamp->matrix; + psVector *stampVector = stamp->vector; + + if (stampMatrix == NULL) { + stampMatrix = psImageAlloc(numSolveParams, numSolveParams, PS_TYPE_F64); + stamp->matrix = stampMatrix; + } else { + PS_ASSERT_IMAGE_TYPE(stampMatrix, PS_TYPE_F64, false); + PS_ASSERT_IMAGE_SIZE(stampMatrix, numSolveParams, numSolveParams, false); + } + psImageInit(stampMatrix, 0.0); + + if (stampVector == NULL) { + stampVector = psVectorAlloc(numSolveParams, PS_TYPE_F64); + stamp->vector = stampVector; + } else { + PS_ASSERT_VECTOR_TYPE(stampVector, PS_TYPE_F64, false); + PS_ASSERT_VECTOR_SIZE(stampVector, (long)numSolveParams, false); + } + psVectorInit(stampVector, 0.0); + psTrace("psModules.imcombine", 6, "subCalcEqn(): stamp %d: allocate matrix and vector.\n", s); + + // + // Evaluate the spatial-order polynomial. The [i][j]-th element of + // the psImage polyValues will hold (x^i * y^j) for the stamp. The + // (x, y) value are scaled to [-1:1] + // + psImage *polyValues = GenSpatialOrder(spatialOrder, + ((psF64) (stamp->x - numHalfCols)) / ((psF64) numHalfCols), + ((psF64) (stamp->y - numHalfRows)) / ((psF64) numHalfRows)); + + psTrace("psModules.imcombine", 6, "subCalcEqn(): stamp %d: generated spatial order terms.\n", s); + + if (kernels->type == PM_SUBTRACTION_KERNEL_POIS) { + // + // Iterate over all pixels surrounding this stamp. + // + for (psS32 y = stamp->y - footprint; y < stamp->y + footprint; y++) { + for (psS32 x = stamp->x - footprint; x < stamp->x + footprint; x++) { + psTrace("psModules.imcombine", 6, "subCalcEqn(): pixel (%d, %d).\n", y, x); + + // The inverse of the noise, squared. + psF32 invNoise2 = 1.0/reference->data.F32[y][x]; + + // + // Iterate over the first convolution */ + // + for (psS32 k1 = 0; k1 < numKernels; k1++) { + psS32 u1 = kernels->u->data.F32[k1]; // Offset in x + psS32 v1 = kernels->v->data.F32[k1]; // Offset in y + psS32 i1 = kernels->xOrder->data.F32[k1]; // Polynomial order in x + psS32 j1 = kernels->yOrder->data.F32[k1]; // Polynomial order in y + + // + // First convolution. This will set the value for the stampVector. + // + // XXX: verify the [y-v2][x-u2] subscript. This generated errors in + // testing, depending on kernel size and footprint. + // + psF32 conv1 = polyValues->data.F64[j1][i1] * reference->data.F32[y - v1][x - u1]; + + // + // Assuming that the first kernel component is 0 order in x and y, and 0 offset + // XXX: I don't understand this: + // + if (k1 != 0) { + conv1 -= reference->data.F32[y][x]; + } + + // + // Iterate over the second convolution + // + for (psS32 k2 = k1; k2 < numKernels; k2++) { + psS32 u2 = (psS32) kernels->u->data.F32[k2]; // Offset in x + psS32 v2 = (psS32) kernels->v->data.F32[k2]; // Offset in y + psS32 i2 = (psS32) kernels->xOrder->data.F32[k2]; // Polynomial order in x + psS32 j2 = (psS32) kernels->yOrder->data.F32[k2]; // Polynomial order in y + // + // XXX: verify the [y-v2][x-u2] subscript. This generated errors in + // testing, depending on kernel size and footprint. + // + // Second convolution + // + psF32 conv2 = polyValues->data.F64[j2][i2] * + reference->data.F32[y-v2][x-u2]; + // + // Assuming that the first kernel component is 0 order in x and y, and 0 offset + // XXX: I don't understand this: + if (k2 != 0) { + // + conv2 -= reference->data.F32[y][x]; + } + + // Add into the matrix element + stampMatrix->data.F64[k1][k2] += conv1 * conv2 * invNoise2; + + } // Iteration on second convolution + + // Add into the vector element + stampVector->data.F64[k1] += input->data.F32[y][x] * conv1 * invNoise2; + + /* Background term */ + stampMatrix->data.F64[k1][bgIndex] += conv1 * invNoise2; + + } // Iteration on first convolution + + // + // Background only terms. + // XXX: understand this. + // + stampMatrix->data.F64[bgIndex][bgIndex] += invNoise2; + stampVector->data.F64[bgIndex] += input->data.F32[y][x] * invNoise2; + } + } + } else if (kernels->type == PM_SUBTRACTION_KERNEL_ISIS) { + // + // Iterate over all pixels surrounding this stamp. + // + // XXX: Why isn't there a polyValues term here? + // + + for (psS32 y = stamp->y - footprint; y < stamp->y + footprint; y++) { + for (psS32 x = stamp->x - footprint; x < stamp->x + footprint; x++) { + psTrace("psModules.imcombine", 6, "subCalcEqn(): pixel (%d, %d).\n", y, x); + psF32 invNoise2 = 1.0/reference->data.F32[y][x]; // The inverse of the noise, squared. + + for (psS32 k1 = 0; k1 < numKernels; k1++) { + psF32 conv1 = IsisKernelConvolve(reference, kernels, k1, x, y); + + for (psS32 k2 = k1; k2 < numKernels; k2++) { + //printf("(k1, k2) is (%d, %d)\n", k1, k2); + psF32 conv2 = IsisKernelConvolve(reference, kernels, k2, x, y); + stampMatrix->data.F64[k1][k2]+= conv1 * conv2 * invNoise2; + } + stampVector->data.F64[k1]+= input->data.F32[y][x] * conv1 * invNoise2; + stampMatrix->data.F64[k1][bgIndex] += conv1 * invNoise2; + } + stampMatrix->data.F64[bgIndex][bgIndex] += invNoise2; + stampVector->data.F64[bgIndex] += input->data.F32[y][x] * invNoise2; + } + } + } else { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: unknown kernel->type.\n"); + return(false); + } + psFree(polyValues); + + // XXX: Generate psTrace() + if (0) { + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + if (stamp->status == PM_STAMP_RECALC) { + psVector *stampVector = stamp->vector; + printf("STAMP: stamp %d vector:\n", s); + PS_VECTOR_PRINT_F64(stampVector); + } + } + } + + // + // Fill in other side of symmetric matrix + // + // XXX: understand this. + // XXX: Why aren't they using numSolveParams instead of numKernels? + // XXX: is this POIS specific? + // + for (psS32 k1 = 0; k1 < numKernels; k1++) { + for (psS32 k2 = 0; k2 < k1; k2++) { + stampMatrix->data.F64[k1][k2] = stampMatrix->data.F64[k2][k1]; + } + stampMatrix->data.F64[bgIndex][k1] = stampMatrix->data.F64[k1][bgIndex]; + } + + // + // XXX: Why aren't they using numSolveParams instead of numKernels? + // XXX: is this POIS specific? + // + #define XXX_CONFIG_PENALTY 1.0 + for (psS32 k = 0; k < numKernels; k++) + { + psS32 u = kernels->u->data.F32[k]; // Offset in x + psS32 v = kernels->v->data.F32[k]; // Offset in y + stampMatrix->data.F64[k][k] += XXX_CONFIG_PENALTY * (psF32)(u*u + v*v); + } + stamp->status = PM_STAMP_USED; + } else { + // Stamp is ignored since it's not PM_STAMP_RECALC + } + } + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionCalculateEquation()\n"); + return(true); +} + + + + +/******************************************************************************* + ******************************************************************************/ +psVector *pmSubtractionSolveEquation(psVector *solution, ///< Solution vector, or NULL + const psArray *stamps ///< Array of stamps + ) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionSolveEquation()\n"); + PS_ASSERT_PTR_NON_NULL(stamps, NULL); + psS32 size = -1; + psS32 s = 0; + + // + // Determine the size of the stamp vectors and matrix. + // We iterate until we find the first acceptable stamp. + // + while ((size == -1) && (s < stamps->n)) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + PS_ASSERT_PTR_NON_NULL(stamp, NULL); + if (stamp->status == PM_STAMP_USED) { + size = ((pmStamp *) stamps->data[s])->vector->n; + PS_ASSERT_INT_POSITIVE(size, NULL); + } + s++; + } + if (size == -1) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: no acceptable stamps. Returning NULL\n"); + return(NULL); + } + + if (solution != NULL) { + PS_ASSERT_VECTOR_TYPE(solution, PS_TYPE_F64, NULL); + PS_ASSERT_VECTOR_SIZE(solution, (long)size, NULL); + } else { + solution = psVectorAlloc(size, PS_TYPE_F64); + } + + // + // Create the solution matrix and vector. + // + // XXX: Test these functions with size=-1. This caused seg faults during test. + // This should be done in the psImage.c and psVector.c test files. It + // should never occur here. + // + psImage *sumMatrix = psImageAlloc(size, size, PS_TYPE_F64); + psVector *sumVector = psVectorAlloc(size, PS_TYPE_F64); + psVectorInit(sumVector, 0.0); + psImageInit(sumMatrix, 0.0); + + // + // Verify that all stamps have similar sizes. + // Compute the sum matrix and vector. + // + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + + if (stamp->status == PM_STAMP_USED) { + PS_ASSERT_INT_EQUAL(((pmStamp *) stamps->data[s])->vector->n, size, NULL); + + psImage *stampMatrix = stamp->matrix; + psVector *stampVector = stamp->vector; + PS_ASSERT_VECTOR_TYPE(stampVector, PS_TYPE_F64, NULL); + PS_ASSERT_VECTOR_SIZE(stampVector, (long)size, NULL); + PS_ASSERT_IMAGE_TYPE(stampMatrix, PS_TYPE_F64, NULL); + PS_ASSERT_IMAGE_SIZE(stampMatrix, size, size, NULL); + + (void)psBinaryOp(sumMatrix, sumMatrix, "+", stampMatrix); + (void)psBinaryOp(sumVector, sumVector, "+", stampVector); + } + } + psVector *permutation = NULL; + // XXX: Check output from these routines. + + // XXX: psTrace() + if (0) { + PS_IMAGE_PRINT_F64(sumMatrix); + } + + psImage *luMatrix = psMatrixLUD(NULL, &permutation, sumMatrix); + if (luMatrix == NULL) { + psError(PS_ERR_UNKNOWN, true, "Failed to LU-Decompose the matrix.\n"); + psFree(sumMatrix); + psFree(sumVector); + psFree(luMatrix); + psFree(permutation); + return(NULL); + } + // XXX: psTrace() + if (0) { + PS_IMAGE_PRINT_F64(luMatrix); + } + + solution = psMatrixLUSolve(solution, luMatrix, sumVector, permutation); + // XXX: psTrace() + // XXX: should we be checking for NAN's in the solution vector? + if (0) { + PS_VECTOR_PRINT_F64(solution); + } + if (solution == NULL) { + psError(PS_ERR_UNKNOWN, true, "Failed to solve the matrix.\n"); + psFree(sumMatrix); + psFree(sumVector); + psFree(luMatrix); + psFree(permutation); + return(NULL); + } + + psFree(sumMatrix); + psFree(sumVector); + psFree(luMatrix); + psFree(permutation); + + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionSolveEquation()\n"); + return(solution); +} + + +/******************************************************************************* + ******************************************************************************/ +static psVector *CalculateDeviations(psVector *deviations, + psArray *stamps, + psS32 footprint, + const psImage *refImage, + const psImage *inImage, + const psImage *mask, + psU32 badStampMaskVal, + const psSubtractionKernels *kernels, + const psVector *solution) +{ + psTrace("psModules.imcombine", 4, + "Calling CalculateDeviations()\n"); + PS_ASSERT_PTR_NON_NULL(stamps, NULL); + if (deviations != NULL) { + PS_ASSERT_VECTOR_TYPE(deviations, PS_TYPE_F32, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(deviations, stamps, NULL); + } else { + deviations = psVectorAlloc(stamps->n, PS_TYPE_F32); + // XXX: Probably not necessary. + psVectorInit(deviations, 0.0); + } + PS_ASSERT_IMAGE_NON_NULL(refImage, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(refImage, NULL); + PS_ASSERT_IMAGE_TYPE(refImage, PS_TYPE_F32, NULL); + PS_ASSERT_IMAGE_NON_NULL(inImage, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(inImage, NULL); + PS_ASSERT_IMAGE_TYPE(inImage, PS_TYPE_F32, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(refImage, inImage, NULL); + PS_ASSERT_IMAGE_NON_NULL(mask, NULL); + PS_ASSERT_IMAGE_NON_EMPTY(mask, NULL); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, NULL); + PS_ASSERT_IMAGES_SIZE_EQUAL(refImage, mask, NULL); + PS_ASSERT_VECTOR_NON_NULL(solution, NULL); + PS_ASSERT_VECTOR_TYPE(solution, PS_TYPE_F64, NULL); + PS_ASSERT_PTR_NON_NULL(kernels, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->v, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->xOrder, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->yOrder, NULL); + if (kernels->preCalc != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->preCalc, NULL); + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_POIS) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Unallowable operation: kernels->preCalc == NULL and kernels->type != PM_SUBTRACTION_KERNEL_POIS.\n"); + return(NULL); + } + } + psS32 nBF = kernels->u->n; + PS_ASSERT_VECTOR_SIZE(solution, (long)nBF+1, NULL); + + psS32 kernelSize = kernels->size; + int xSize = footprint + kernelSize; + int ySize = footprint + kernelSize; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); // Statistics + psImage *subStamp = psImageAlloc(2 * xSize, 2 * ySize, PS_TYPE_F32); // Subtraction of stamp + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = stamps->data[s]; // The coordinates of the stamp of interest + psS32 x = stamp->x; // Stamp x coord + psS32 y = stamp->y; // Stamp y coord + if (stamp->status == PM_STAMP_USED) { + + psRegion myReg = psRegionSet(x - xSize, x + xSize, y - ySize, y + ySize); + psImage *refStamp = psImageSubset((psImage *) refImage, myReg); + psImage *inStamp = psImageSubset((psImage *) inImage, myReg); + psImage *maskStamp = psImageSubset((psImage *) mask, myReg); + psImage *convRefStamp = ConvolveImage(refStamp, maskStamp, badStampMaskVal, solution, kernels); + + // Calculate chi^2 + (void)psBinaryOp(subStamp, inStamp, "-", convRefStamp); + (void)psBinaryOp(subStamp, subStamp, "/", inStamp); + (void)psBinaryOp(subStamp, subStamp, "*", subStamp); + myReg = psRegionSet(kernelSize, kernelSize + 2 * footprint, + kernelSize, kernelSize + 2 * footprint); + psImage *subStampTrim = psImageSubset((psImage *) subStamp, myReg); + psImage *maskStampTrim = psImageSubset((psImage *) maskStamp, myReg); + psImageStats(stats, subStampTrim, maskStampTrim, badStampMaskVal); + + deviations->data.F32[s] = stats->sampleMean * (psF32)footprint * (psF32)footprint * 4.0; + // XXX: Allocate and free these elsewhere. + psFree(refStamp); + psFree(inStamp); + psFree(maskStamp); + psFree(convRefStamp); + psFree(subStampTrim); + psFree(maskStampTrim); + } + } + + psFree(stats); + psFree(subStamp); + + psTrace("psModules.imcombine", 4, + "Exiting CalculateDeviations()\n"); + return deviations; +} + +/******************************************************************************* + ******************************************************************************/ +bool pmSubtractionRejectStamps(psArray *stamps, ///< Array of stamps to check for rejection + psImage *mask, ///< Mask image + psU32 badStampMaskVal, ///< Value to use in mask for bad stamp + psS32 footprint, ///< Region to mask if stamp is bad + psF32 sigmaRej, ///< Number of RMS deviations above zero at which to reject + const psImage *refImage, ///< Reference image + const psImage *inImage, ///< Input image + const psVector *solution, ///< Solution vector + const psSubtractionKernels *kernels ///< Array of kernel parameters + ) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionRejectStamps()\n"); + PS_ASSERT_PTR_NON_NULL(stamps, false); + PS_ASSERT_IMAGE_NON_NULL(refImage, false); + PS_ASSERT_IMAGE_NON_EMPTY(refImage, false); + PS_ASSERT_IMAGE_TYPE(refImage, PS_TYPE_F32, false); + PS_ASSERT_IMAGE_NON_NULL(inImage, false); + PS_ASSERT_IMAGE_NON_EMPTY(inImage, false); + PS_ASSERT_IMAGE_TYPE(inImage, PS_TYPE_F32, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(refImage, inImage, false); + PS_ASSERT_IMAGE_NON_NULL(mask, false); + PS_ASSERT_IMAGE_NON_EMPTY(mask, false); + PS_ASSERT_IMAGE_TYPE(mask, PS_TYPE_U8, false); + PS_ASSERT_IMAGES_SIZE_EQUAL(refImage, mask, false); + PS_ASSERT_VECTOR_NON_NULL(solution, false); + PS_ASSERT_VECTOR_TYPE(solution, PS_TYPE_F64, false); + PS_ASSERT_PTR_NON_NULL(kernels, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->v, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->xOrder, false); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->yOrder, false); + if (kernels->preCalc != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->preCalc, false); + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_POIS) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Unallowable operation: kernels->preCalc == NULL and kernels->type != PM_SUBTRACTION_KERNEL_POIS.\n"); + return(false); + } + } + + psS32 nBF = kernels->u->n; + PS_ASSERT_VECTOR_SIZE(solution, (long)nBF+1, false); + + psVector *deviations = CalculateDeviations(NULL, + stamps, + footprint, + refImage, + inImage, + mask, + badStampMaskVal, + kernels, + solution); + // + // Calculate the deviation from zero. + // + psF64 meanDev = 0.0; + psS32 numDev = 0; + for (psS32 i = 0; i < deviations->n; i++) { + pmStamp *stamp = stamps->data[i]; + if (stamp->status == PM_STAMP_USED) { + meanDev += PS_SQR(deviations->data.F32[i]); + numDev++; + } + } + psF32 rmsDev = sqrtf(meanDev / (psF64)(numDev - 1)); + psF32 limit = rmsDev * sigmaRej; + + for (psS32 s = 0; s < stamps->n; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + if (stamp->status == PM_STAMP_USED && fabsf(deviations->data.F32[s]) > limit) { + // Mask out the stamp in the image so you don't find it again + for (psS32 y = stamp->y - footprint; y < stamp->y + footprint; y++) { + for (psS32 x = stamp->x - footprint; x < stamp->x + footprint; x++) { + mask->data.U8[y][x] |= badStampMaskVal; + } + } + + // Set stamp for replacement + stamp->x = 0; + stamp->y = 0; + stamp->status = PM_STAMP_REJECTED; + } + } + + psFree(deviations); + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionRejectStamps()\n"); + return(true); +} + +/******************************************************************************* + ******************************************************************************/ +psImage *pmSubtractionKernelImage(psImage *out, + const psVector *solution, + const psSubtractionKernels *kernels, + psF32 x, + psF32 y + ) +{ + psTrace("psModules.imcombine", 3, + "Calling pmSubtractionKernelImage()\n"); + PS_ASSERT_VECTOR_NON_NULL(solution, NULL); + PS_ASSERT_PTR_NON_NULL(kernels, NULL); + PS_ASSERT_FLOAT_WITHIN_RANGE(x, -1.0, 1.0, NULL); + PS_ASSERT_FLOAT_WITHIN_RANGE(y, -1.0, 1.0, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->v, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->xOrder, NULL); + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->yOrder, NULL); + if (kernels->preCalc != NULL) { + PS_ASSERT_VECTORS_SIZE_EQUAL(kernels->u, kernels->preCalc, NULL); + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_POIS) { + psError(PS_ERR_BAD_PARAMETER_NULL, true, + "Unallowable operation: kernels->preCalc == NULL and kernels->type != PM_SUBTRACTION_KERNEL_POIS.\n"); + return(NULL); + } + } + PS_ASSERT_INT_EQUAL(1+kernels->u->n, solution->n, NULL); + + psS32 nBF = kernels->u->n; + psS32 spatialOrder = kernels->spatialOrder; + psS32 kernelSize = kernels->size; + + if (out != NULL) { + if ((out->numCols < (1+2*kernelSize)) || (out->numRows < (1+2*kernelSize))) { + psLogMsg(__func__, PS_LOG_WARN, "WARNING: out image is not large enough.\n"); + return(out); + } + } else { + out = psImageAlloc(1+2*kernelSize, 1+2*kernelSize, PS_TYPE_F32); + } + psImageInit(out, 0.0); + + // + // Generate the spatial-order polynomial. The [i][j]-th element of + // the psImage polyValues will hold (x^i * y^j) for the stamp. + // + psImage *polyValues = GenSpatialOrder(spatialOrder, x, y); + + // XXX: switch (i, j) so they correspond to (x, y). + if (kernels->type == PM_SUBTRACTION_KERNEL_ISIS) { + for (psS32 k = 0 ; k < nBF ; k++) { + psS32 xOrder = (psS32) kernels->xOrder->data.F32[k]; + psS32 yOrder = (psS32) kernels->yOrder->data.F32[k]; + psF64 polyVal = polyValues->data.F64[yOrder][xOrder]; + + // XXX: Verify that this is correct. + for (psS32 i = -kernelSize ; i <= kernelSize ; i++) { + for (psS32 j = -kernelSize ; j <= kernelSize ; j++) { + psImage *preCalc = (psImage *) kernels->preCalc->data[k]; + out->data.F32[i+kernelSize][j+kernelSize]+= + solution->data.F64[k] * + preCalc->data.F32[i+kernelSize][j+kernelSize] * + polyVal; + } + } + } + } else if (kernels->type == PM_SUBTRACTION_KERNEL_POIS) { + for (psS32 k = 0 ; k < nBF ; k++) { + // XXX: Why don't we have compilation warnings on type here (if + // we remove the (psS32) cast)? + psS32 u = (psS32) kernels->u->data.F32[k]; + psS32 v = (psS32) kernels->v->data.F32[k]; + psS32 xOrder = (psS32) kernels->xOrder->data.F32[k]; + psS32 yOrder = (psS32) kernels->yOrder->data.F32[k]; + // XXX: Verify that this is correct. + + out->data.F32[kernelSize - v][kernelSize - u]+= + solution->data.F64[k] * polyValues->data.F64[yOrder][xOrder]; + } + } + psFree(polyValues); + + psTrace("psModules.imcombine", 3, + "Exiting pmSubtractionKernelImage()\n"); + return(out); +} Index: /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.h =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.h (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmImageSubtract.h (revision 12167) @@ -0,0 +1,124 @@ +/* @file ImageSubtract.h + * + * This file will contain code which creates a set of kernel basis + * functions, solves for their solution, and applies them to an image. + * + * @author Paul Price, IfA (original prototype) + * @author GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PM_IMAGE_COMBINE_H +#define PM_IMAGE_COMBINE_H + +/// @addtogroup imcombine Image Combinations +/// @{ + +#include +#include +#include + +typedef enum { + PM_SUBTRACTION_KERNEL_POIS, ///< POIS kernel --- delta functions + PM_SUBTRACTION_KERNEL_ISIS ///< ISIS kernel --- gaussians modified by polynomials +} pmSubtractionKernelsType; + +typedef struct +{ + pmSubtractionKernelsType type; ///< Type ofKernels --- allowing the use of multiple kernels + psVector *u, *v; ///< Offset (for POIS) or polynomial order (for ISIS) + psVector *sigma; ///< Width of Gaussian (for ISIS) + psVector *xOrder, *yOrder; ///< Spatial Polynomial order (for all) + int subIndex; ///< Index of kernel to be subtracted to maintain flux conservation + psArray *preCalc; ///< Array of images containing pre-calculated kernel (to + ///< accelerate ISIS; don't use for POIS) + psS32 size; ///< The halfsize of the kernel + psS32 spatialOrder; ///< The spatial order of the kernels +} +psSubtractionKernels; + +psSubtractionKernels *pmSubtractionKernelsAllocPOIS( + int size, + int SpatialOrder +); + +psSubtractionKernels *pmSubtractionKernelsAllocISIS( + const psVector *sigmas, + const psVector *orders, + int size, + int SpatialOrder +); + +typedef enum { + PM_STAMP_INIT, ///< Initial state + PM_STAMP_USED, ///< Use this stamp + PM_STAMP_REJECTED, ///< This stamp has been rejected + PM_STAMP_RECALC, ///< Having been reset, this stamp is to be recalculated + PM_STAMP_NONE ///< No stamp in this region +} pmStampStatus; + +typedef struct +{ + int x, y; ///< Position + int p_xSize; + int p_ySize; + int p_xMin; + int p_xMax; + int p_yMin; + int p_yMax; + psImage *matrix; ///< Associated matrix + psVector *vector; ///< Assoicated vector + pmStampStatus status; ///< Status ofstamp +} +pmStamp; + +psArray *pmSubtractionFindStamps( + psArray *stamps, ///< Output stamps, or NULL + const psImage *image, ///< Image for which to find stamps + const psImage *mask, ///< Mask + psU32 maskVal, ///< Value for mask + psF32 threshold, ///< Threshold for stamps in the image + psS32 xNum, ///< Number of stamps in x + psS32 yNum, ///< Number of stamps in y + psS32 border ///< Border around image to ignore (should be size of kernel) +); + +bool pmSubtractionCalculateEquation( + psArray *stamps, ///< The stamps for which to calculate the equation, + const psImage *reference, ///< Reference image + const psImage *input, ///< Input image + const psSubtractionKernels *kernels,///< The kernel basis functions + psS32 footprint ///< Half-size of region over which to calculate equation +); + + +psVector *pmSubtractionSolveEquation( + psVector *solution, ///< Solution vector, or NULL + const psArray *stamps ///< Array of stamps +); + +bool pmSubtractionRejectStamps( + psArray *stamps, ///< Array of stamps to check for rejection + psImage *mask, ///< Mask image + psU32 badStampMaskVal, ///< Value to use in mask for bad stamp + psS32 footprint, ///< Region to mask if stamp is bad + psF32 sigmaRej, ///< Number of RMS deviations above zero at which to reject + const psImage *refImage, ///< Reference image + const psImage *inImage, ///< Input image + const psVector *solution, ///< Solution vector + const psSubtractionKernels *kernels ///< Array of kernel parameters +); + +psImage *pmSubtractionKernelImage( + psImage *out, + const psVector *solution, + const psSubtractionKernels *kernels, + psF32 x, + psF32 y +); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.c =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.c (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.c (revision 12167) @@ -0,0 +1,405 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "pmFPA.h" +#include "pmHDUUtils.h" +#include "pmFPAMaskWeight.h" +#include "pmConceptsAverage.h" + +#include "pmReadoutCombine.h" + +//#define SHOW_BUSY 1 // Show that the function is busy + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Public functions +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// Allocator for pmCombineParams +pmCombineParams *pmCombineParamsAlloc(psStatsOptions combine) +{ + pmCombineParams *params = psAlloc(sizeof(pmCombineParams)); + + params->combine = combine; + params->maskVal = 0; + params->nKeep = 0; + params->fracHigh = 0.0; + params->fracHigh = 0.0; + params->iter = 1; + params->rej = INFINITY; + params->weights = false; + + return params; +} + + +// XXX: Maybe add support for S16 and S32 types. Currently, only F32 supported. +bool pmReadoutCombine(pmReadout *output, const psArray *inputs, const psVector *zero, const psVector *scale, + const pmCombineParams *params) +{ + // Check inputs + PS_ASSERT_PTR_NON_NULL(output, false); + PS_ASSERT_ARRAY_NON_NULL(inputs, false); + PS_ASSERT_PTR_NON_NULL(params, false); + if (zero) { + PS_ASSERT_VECTOR_TYPE(zero, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(zero, inputs->n, false); + } + if (scale) { + PS_ASSERT_VECTOR_TYPE(scale, PS_TYPE_F32, false); + PS_ASSERT_VECTOR_SIZE(scale, inputs->n, false); + } + PS_ASSERT_FLOAT_WITHIN_RANGE(params->fracLow, 0.0, 1.0, false); + PS_ASSERT_FLOAT_WITHIN_RANGE(params->fracHigh, 0.0, 1.0, false); + if (params->combine != PS_STAT_SAMPLE_MEAN && params->combine != PS_STAT_SAMPLE_MEDIAN && + params->combine != PS_STAT_ROBUST_MEDIAN && params->combine != PS_STAT_FITTED_MEAN && + params->combine != PS_STAT_CLIPPED_MEAN) { + psError(PS_ERR_BAD_PARAMETER_VALUE, true, "Combination method is not SAMPLE_MEAN, SAMPLE_MEDIAN, " + "ROBUST_MEDIAN, FITTED_MEAN or CLIPPED_MEAN.\n"); + return false; + } + + bool first = !output->image; // First pass through? + + pmHDU *hdu = pmHDUFromReadout(output); // Output HDU + if (!hdu) { + psError(PS_ERR_UNEXPECTED_NULL, false, "Unable to find HDU for readout.\n"); + return false; + } + + if (first) { + psString comment = NULL; // Comment to add to header + psStringAppend(&comment, "Combining using statistic: %x", params->combine); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + } + + psStats *stats = psStatsAlloc(params->combine); // The statistics to use in the combination + if (params->combine == PS_STAT_CLIPPED_MEAN) { + stats->clipSigma = params->rej; + stats->clipIter = params->iter; + + if (first) { + psString comment = NULL; // Comment to add to header + psStringAppend(&comment, "Combination clipping: %d iterations, rejection at %f sigma", + params->iter, params->rej); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + } + } + + // Step through each readout in the input image list to determine how big of an output image is needed to + // combine these input images. + int maxInputCols = 0; // The largest input column value + int maxInputRows = 0; // The largest input row value + int minInputCols = INT_MAX; // The smallest input column value + int minInputRows = INT_MAX; // The smallest input row value + int xSize = 0, ySize = 0; // The size of the output image + + bool valid = false; // Do we have a single valid input? + for (long i = 0; i < inputs->n; i++) { + pmReadout *readout = inputs->data[i]; // Readout of interest + pmCell *cell = readout->parent; // The parent cell + + if (!readout || !readout->image) { + psError(PS_ERR_UNEXPECTED_NULL, true, "Input readout %ld is NULL or has NULL image.\n", i); + return false; + } + + bool mdok = true; // Status of MD lookup + psRegion *trimsec = psMetadataLookupPtr(&mdok, cell->concepts, "CELL.TRIMSEC"); // Trim section + if (!mdok || !trimsec || psRegionIsNaN(*trimsec)) { + psLogMsg(__func__, PS_LOG_WARN, "CELL.TRIMSEC is not set for readout %ld --- ignored.\n", i); + } else { + xSize = PS_MAX(xSize, trimsec->x1 - trimsec->x0); + ySize = PS_MAX(ySize, trimsec->y1 - trimsec->y0); + } + + if (params->weights && !readout->weight) { + psError(PS_ERR_UNEXPECTED_NULL, true, + "Rejection based on weights requested, but no weights supplied for image %ld.\n", i); + return false; + } + + valid = true; + + // Range of pixels on output image + minInputRows = PS_MIN(minInputRows, readout->row0); + maxInputRows = PS_MAX(maxInputRows, readout->row0 + readout->image->numRows); + minInputCols = PS_MIN(minInputCols, readout->col0); + maxInputCols = PS_MAX(maxInputCols, readout->col0 + readout->image->numCols); + psTrace("psModules.imcombine", 7, "Readout %ld: offset %d,%d; size %dx%d\n", i, + readout->col0, readout->row0, readout->image->numCols, readout->image->numRows); + } + if (!valid) { + psError(PS_ERR_IO, true, "No valid inputs.\n"); + return NULL; + } + + // Update the origin + if (output->image) { + *(psS32 *) &(output->col0) = PS_MIN(minInputCols, output->col0); + *(psS32 *) &(output->row0) = PS_MIN(minInputRows, output->row0); + } else { + *(psS32 *) &(output->col0) = minInputCols; + *(psS32 *) &(output->row0) = minInputRows; + } + psTrace("psModules.imcombine", 7, "Output minimum: %d,%d\n", output->col0, output->row0); + + // Allocate the output products + + if (!output->image) { + output->image = psImageAlloc(xSize, ySize, PS_TYPE_F32); + } + if (output->image->numCols < xSize || output->image->numRows < ySize) { + // Generate the new output image by extending the current one, or making a whole new one + psImage *newImage = psImageAlloc(xSize, ySize, PS_TYPE_F32); + psImageInit(newImage, 0.0); + psImageOverlaySection(newImage, output->image, output->col0, output->row0, "="); + psFree(output->image); + output->image = newImage; + } + + if (!output->mask) { + output->mask = psImageAlloc(xSize, ySize, PS_TYPE_U8); + } + if (output->mask->numCols < xSize || output->mask->numRows < ySize) { + psImage *newMask = psImageAlloc(xSize, ySize, PS_TYPE_U8); + psImageInit(newMask, 0); + psImageOverlaySection(newMask, output->mask, output->col0, output->row0, "="); + psFree(output->mask); + output->mask = newMask; + } + + psStatsOptions combineStdev = 0; // Statistics option for weights + if (params->weights) { + + if (!output->weight) { + output->weight = psImageAlloc(xSize, ySize, PS_TYPE_F32); + } + if (output->weight->numCols < xSize || output->weight->numRows < ySize) { + psImage *newWeight = psImageAlloc(xSize, ySize, PS_TYPE_F32); + psImageInit(newWeight, 0.0); + psImageOverlaySection(newWeight, output->weight, output->col0, output->row0, "="); + psFree(output->weight); + output->weight = newWeight; + } + + if (first) { + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, + "Using input weights to combine images", ""); + } + + // Get the correct statistics option for weights + switch (params->combine) { + case PS_STAT_SAMPLE_MEAN: + case PS_STAT_SAMPLE_MEDIAN: + combineStdev = PS_STAT_SAMPLE_STDEV; + break; + case PS_STAT_ROBUST_MEDIAN: + combineStdev = PS_STAT_ROBUST_STDEV; + break; + case PS_STAT_FITTED_MEAN: + combineStdev = PS_STAT_FITTED_STDEV; + break; + case PS_STAT_CLIPPED_MEAN: + combineStdev = PS_STAT_CLIPPED_STDEV; + break; + default: + psAbort("Should never get here --- checked params->combine before.\n"); + } + stats->options |= combineStdev; + } + + // We loop through each pixel in the output image. We loop through each input readout. We determine if + // that output pixel is contained in the image from that readout. If so, we save it in psVector pixels. + // If not, we set a mask for that element in pixels. Then, we mask off pixels not between fracLow and + // fracHigh. Then we call the vector stats routine on those pixels/mask. Then we set the output pixel + // value to the result of the stats call. + + psVector *pixels = psVectorAlloc(inputs->n, PS_TYPE_F32); // Stack of pixels + psF32 *pixelsData = pixels->data.F32; // Dereference pixels + + psVector *mask = psVectorAlloc(inputs->n, PS_TYPE_U8); // Mask for stack + psU8 *maskData = mask->data.U8; // Dereference mask + + psVector *weights = NULL; // Stack of weights + psVector *errors = NULL; // Stack of errors (sqrt of variance/weights), for psVectorStats + psF32 *weightsData = NULL; // Dereference weights + if (params->weights) { + weights = psVectorAlloc(inputs->n, PS_TYPE_F32); // Stack of weights + weightsData = weights->data.F32; + } + psVector *index = NULL; // The indices to sort the pixels + + float keepFrac = 1.0 - params->fracLow - params->fracHigh; // Fraction of pixels to keep + if (keepFrac != 1.0 && first) { + psString comment = NULL; // Comment to add to header + psStringAppend(&comment, "Min/max rejection: %f high, %f low, keep %d", + params->fracHigh, params->fracLow, params->nKeep); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + } + + psMaskType maskVal = params->maskVal; // The mask value + if (maskVal && first) { + psString comment = NULL; // Comment to add to header + psStringAppend(&comment, "Mask for combination: %x", maskVal); + psMetadataAddStr(hdu->header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, comment, ""); + psFree(comment); + } + + #ifndef PS_NO_TRACE + psTrace("psModules.imcombine", 3, "Iterating output: %d --> %d, %d --> %d\n", + minInputCols - output->col0, maxInputCols - output->col0, + minInputRows - output->row0, maxInputRows - output->row0); + if (psTraceGetLevel("psModules.imcombine") >= 3) { + for (int r = 0; r < inputs->n; r++) { + pmReadout *readout = inputs->data[r]; // Input readout + psTrace("psModules.imcombine", 3, "Iterating input %d: %d --> %d, %d --> %d\n", r, + minInputCols - readout->col0, maxInputCols - readout->col0, + minInputRows - readout->row0, maxInputRows - readout->row0); + } + } + #endif + + // Dereference output products + psF32 **outputImage = output->image->data.F32; // Output image + psU8 **outputMask = output->mask->data.U8; // Output mask + psF32 **outputWeight = NULL; // Output weight map + if (output->weight) { + outputWeight = output->weight->data.F32; + } + + psVector *invScale = NULL; // Inverse scale; pre-calculated for efficiency + if (scale) { + invScale = (psVector*)psBinaryOp(NULL, psScalarAlloc(1.0, PS_TYPE_F32), "/", (const psPtr)scale); + } + + for (int i = minInputRows; i < maxInputRows; i++) { + int yOut = i - output->row0; // y position on output readout + #ifdef SHOW_BUSY + + if (psTraceGetLevel("psModules.imcombine") > 9) { + printf("Processing row %d\r", i); + fflush(stdout); + } + #endif + for (int j = minInputCols; j < maxInputCols; j++) { + int xOut = j - output->col0; // x position on output readout + + int numValid = 0; // Number of valid pixels in the stack + memset(maskData, 0, mask->n * sizeof(psU8)); // Reset the mask + for (int r = 0; r < inputs->n; r++) { + pmReadout *readout = inputs->data[r]; // Input readout + int yIn = i - readout->row0; // y position on input readout + int xIn = j - readout->col0; // x position on input readout + psImage *image = readout->image; // The readout image + + #if 0 // This should have been taken care of already: + // Check bounds + if (xIn < 0 || xIn >= image->numCols || yIn < 0 || yIn >= image->numRows) { + continue; + } + #endif + pixelsData[r] = image->data.F32[yIn][xIn]; + if (params->weights) { + weightsData[r] = readout->weight->data.F32[yIn][xIn]; + } + + if (zero) { + pixelsData[r] -= zero->data.F32[r]; + } + if (scale) { + pixelsData[r] *= invScale->data.F32[r]; + if (params->weights) { + weightsData[r] *= invScale->data.F32[r] * invScale->data.F32[r]; + } + } + + // Check mask + psImage *roMask = readout->mask; // The mask image + if (roMask && roMask->data.U8[yIn][xIn] & maskVal) { + maskData[r] = 1; + continue; + } + + numValid++; + } + + if (numValid == 0) { + outputMask[yOut][xOut] = PM_MASK_FLAT; + outputImage[yOut][xOut] = NAN; + continue; + } + + // Apply fracLow,fracHigh if there are enough pixels + if (numValid * keepFrac >= params->nKeep && keepFrac != 1.0) { + index = psVectorSortIndex(index, pixels); + int numLow = numValid * params->fracLow; // Number of low pixels to clip + int numHigh = numValid * params->fracHigh; // Number of high pixels to clip + // Low pixels + psS32 *indexData = index->data.S32; // Dereference index + for (int k = 0, numMasked = 0; numMasked < numLow && k < index->n; k++) { + // Don't count the ones that are already masked + if (!maskData[indexData[k]]) { + maskData[indexData[k]] = 1; + numMasked++; + } + } + // High pixels + for (int k = pixels->n - 1, numMasked = 0; numMasked < numHigh && k >= 0; k--) { + // Don't count the ones that are already masked + if (! maskData[indexData[k]]) { + maskData[indexData[k]] = 1; + numMasked++; + } + } + } + + // XXXXX this step probably is very expensive : convert errors to variance everywhere? + if (params->weights) { + errors = (psVector*)psUnaryOp(errors, weights, "sqrt"); + } + + // Combination + psVectorStats(stats, pixels, errors, mask, 1); + outputImage[yOut][xOut] = psStatsGetValue(stats, params->combine); + if (params->weights) { + float stdev = psStatsGetValue(stats, combineStdev); + outputWeight[yOut][xOut] = PS_SQR(stdev); // Variance + // XXXX this is not the correct formal error. + // also, the weighted mean is not obviously the correct thing here + } + } + } + #ifdef SHOW_BUSY + if (psTraceGetLevel("psModules.imcombine") > 9) { + printf("\n"); + } + #endif + psFree(index); + psFree(pixels); + psFree(mask); + psFree(weights); + psFree(errors); + psFree(stats); + psFree(invScale); + + // Update the "concepts" + psList *inputCells = psListAlloc(NULL); // List of cells + for (long i = 0; i < inputs->n; i++) { + pmReadout *readout = inputs->data[i]; // Readout of interest + psListAdd(inputCells, PS_LIST_TAIL, readout->parent); + } + pmConceptsAverageCells(output->parent, inputCells, NULL, NULL); + psFree(inputCells); + + return true; +} + Index: /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.h =================================================================== --- /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.h (revision 12167) +++ /branches/rel-1-1/psModules/src/imcombine/pmReadoutCombine.h (revision 12167) @@ -0,0 +1,51 @@ +/* @file pmReadoutCombine.h + * @brief Combine multiple readouts + * + * @author George Gusciora, MHPCC + * @author Paul Price, IfA + * + * @version $Revision: 1.10 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_READOUT_COMBINE_H +#define PM_READOUT_COMBINE_H + +/// @addtogroup imcombine Image Combinations +/// @{ + +#include +#include "pmFPA.h" + +/// Combination parameters for pmReadoutCombine. +/// +/// These values define how the combination is performed, and should not vary by detector, so that it can be +/// re-used for multiple combinations. +typedef struct +{ + psStatsOptions combine; ///< Statistic to use when performing the combination + psMaskType maskVal; ///< Mask value + int nKeep; ///< Mimimum number of pixels to keep + float fracHigh; ///< Fraction of high pixels to immediately throw + float fracLow; ///< Fraction of low pixels to immediately throw + int iter; ///< Number of iterations for clipping (for CLIPPED_MEAN only) + float rej; ///< Rejection threshould for clipping (for CLIPPED_MEAN only) + bool weights; ///< Use the supplied weights (instead of calculated stdev)? +} +pmCombineParams; + +// Allocator for pmCombineParams +pmCombineParams *pmCombineParamsAlloc(psStatsOptions statsOptions ///< Statistic to use for combination + ); + +/// Combine multiple readouts, applying zero and scale, with optional minmax clipping +bool pmReadoutCombine(pmReadout *output,///< Output readout; altered and returned + const psArray *inputs, ///< Array of input readouts (F32 image and weight, U8 mask) + const psVector *zero, ///< Zero corrections to subtract from input, or NULL + const psVector *scale, ///< Scale corrections to divide into input, or NULL + const pmCombineParams *params ///< Combination parameters + ); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/mainpage.dox =================================================================== --- /branches/rel-1-1/psModules/src/mainpage.dox (revision 12167) +++ /branches/rel-1-1/psModules/src/mainpage.dox (revision 12167) @@ -0,0 +1,127 @@ +/** @mainpage psModules Image Processing Library + + +@section intro Introduction +This library contains the Pan-STARRS Image Processing Pipeline (IPP) modules (psModules). These modules +use the functionality of the Pan-STARRS Library (psLib) to perform more complex tasks associated with image +processing. Modules were constructed to support each of the required processing stages and are listed according +to the particular processing stage for which they will primarily be used. To preserve namespace, globally-visible +structures and functions are prefixed with pm, an abbreviation for Pan-STARRS Modules. + +The capabilities provided by psModules are grouped into the following areas which are +also reflected in the file system directory structure: + - Configuration + - Astrometry, Focal Plane + - Photometry + - Basic Image Detrending + - Object Detection and Classification + - Image Combination + - Image Subtraction + +The installed code for psModules consists of header files and a binary library. + +@section extinstall Required external Libraries + +Before building psLib from source, several external software libraries must +be installed. These include: + - Pan-STARRS Library (psLib) + - Available from the Maui High Performance Computiong Center (MHPCC) at https://mhpcc.pan-starrs.org/code/releases + - Compatibility tested with rel5 + - Note, psLib itself has many external library dependencies. + - Doxygen Documentation System + - Only needed if code documentation is to be made + - Available at http://www.doxygen.org + - Compatibility tested with version 1.3.6 + - The optional companion package, GraphViz (a.k.a., the 'dot' command), is recommended to enable header-file dependency diagrams + +We recommend using the particular versions listed as compatibility tested, as +that is the only versions of the external libraries tested to work well with psLib +and psModules. Though it is quite possible that later versions of the libraries +listed will also work, care must be taken when upgrading these libraries to verify +that its functionality is compatible with the tested version. + +@section install How to Build from Source + +Tested versions of psModules are put into a tar file and can be downloaded from: + +https://mhpcc.pan-starrs.org/code/releases + +If one has a login account on mhpcc.pan-starrs.org, direct CVS access is +possible. Example of the commands required for direct CVS retrieval are +as follows: +
+$ cvs -d:ext:USERNAME@mhpcc.pan-starrs.org:/data/panstarrs/cvsroot co -r RELEASEBRANCH psModule
+
+where: + - USERNAME is your login name on the server + - RELEASEBRANCH is the desired release branch, e.g. rel7. + + +@section build How to Build and Test the psModules Library. + +The psModules library and associated tests are made via the GNU autoconf/automake system. + +The source should build using the configure script in the psModules directory. The +recommended steps are: +
+$ cd psmodules
+$ ./configure
+$ make
+$ make check
+$ make install
+
+Unless otherwise specified, the library is installed with PREFIX of the current directory. + +If the code was retrieved from CVS, you will need to substitute 'autogen.sh' for 'configure' in +above example. + +Other configuration options, such as location of external libraries, are also available. +To get a list of options, type the following in the top psModules directory. +
+$ configure --help
+
+A likely option needed is '--with-pslib-config', which specifies the location of +the configuration script for psLib. By default, configure searches for it using PATH, but that +is not always sufficient. + +@section install How to Install + +To install the library using the prefix given in the configure step, execute in +the top build directory: +
+$ make install
+
+ + +@section usage Building and Linking your code to the psModules library + +To assist the use of the library with your own code, a configuration tool is part +of the psModules library package. This tool, psmodules-config, is installed in the BIN +directory, according to the options given to the configure script. + +The required CFLAG options for the compiler stage of code that uses psModules can be +obtained via 'psmodules-config --cflags'. This outputs the cc options that supplies +include path(s) required to find the psModules headers. + +The required linking options, can be obtained via 'psmodules-config --libs'. This +outputs the ld options that supplies the library paths and files required to +link to the psModules library. + +Note: psmodules-config usage above refers to the install locations of the library. + +@section doc How to Create Code Documentation + +Both HTML and man page documentation may be generated from the inline +documentation embedded in the code using the following commands: +
+$ cd psmodules
+$ make docs
+
+This places documentation in PREFIX/docs. + +Also, a prebuilt set of code documentation for both the releases and last +CVS snapshot can be found at: + +https://mhpcc.pan-starrs.org/docs/ + +*/ Index: /branches/rel-1-1/psModules/src/objects/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/src/objects/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +*.la +*.lo Index: /branches/rel-1-1/psModules/src/objects/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/src/objects/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/Makefile.am (revision 12167) @@ -0,0 +1,52 @@ +noinst_LTLIBRARIES = libpsmodulesobjects.la + +libpsmodulesobjects_la_CPPFLAGS = $(SRCINC) $(PSMODULES_CFLAGS) -I../pslib/ +libpsmodulesobjects_la_LDFLAGS = -release $(PACKAGE_VERSION) +libpsmodulesobjects_la_SOURCES = \ + pmPeaks.c \ + pmMoments.c \ + pmModel.c \ + pmModelGroup.c \ + pmSource.c \ + pmSourceSky.c \ + pmSourceContour.c \ + pmSourceFitModel.c \ + pmSourcePhotometry.c \ + pmSourceIO.c \ + pmSourceIO_CMF.c \ + pmSourceIO_CMP.c \ + pmSourceIO_OBJ.c \ + pmSourceIO_SX.c \ + pmSourceIO_RAW.c \ + pmSourcePlots.c \ + pmSourcePlotPSFModel.c \ + pmSourcePlotMoments.c \ + pmPSF.c \ + pmPSF_IO.c \ + pmPSFtry.c \ + pmGrowthCurve.c + +EXTRA_DIST = \ + models/pmModel_GAUSS.c \ + models/pmModel_PGAUSS.c \ + models/pmModel_QGAUSS.c \ + models/pmModel_SGAUSS.c + +pkginclude_HEADERS = \ + pmPeaks.h \ + pmMoments.h \ + pmModel.h \ + pmModelGroup.h \ + pmSource.h \ + pmSourceSky.h \ + pmSourceContour.h \ + pmSourceFitModel.h \ + pmSourcePhotometry.h \ + pmSourceIO.h \ + pmSourcePlots.h \ + pmPSF.h \ + pmPSF_IO.h \ + pmPSFtry.h \ + pmGrowthCurve.h + +CLEANFILES = *~ Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_GAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_GAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_GAUSS.c (revision 12167) @@ -0,0 +1,316 @@ +/****************************************************************************** + * this file defines the GAUSS source shape model. Note that these model functions are loaded + * by pmModelGroup.c using 'include', and thus need no 'include' statements of their own. The + * models use a psVector to represent the set of parameters, with the sequence used to specify + * the meaning of the parameter. The meaning of the parameters may thus vary depending on the + * specifics of the model. All models which are used a PSF representations share a few + * parameters, for which # define names are listed in pmModel.h: + + pure Gaussian: + exp(-z) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) * SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) * SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + *****************************************************************************/ + +# define PM_MODEL_FUNC pmModelFunc_GAUSS +# define PM_MODEL_FLUX pmModelFlux_GAUSS +# define PM_MODEL_GUESS pmModelGuess_GAUSS +# define PM_MODEL_LIMITS pmModelLimits_GAUSS +# define PM_MODEL_RADIUS pmModelRadius_GAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_GAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_GAUSS + +psF32 PM_MODEL_FUNC(psVector *deriv, + const psVector *params, + const psVector *pixcoord) +{ + psF32 *PAR = params->data.F32; + + psF32 X = pixcoord->data.F32[0] - PAR[PM_PAR_XPOS]; + psF32 Y = pixcoord->data.F32[1] - PAR[PM_PAR_YPOS]; + psF32 px = X / PAR[PM_PAR_SXX]; + psF32 py = Y / PAR[PM_PAR_SYY]; + psF32 z = PS_SQR(px) + PS_SQR(py) + PAR[PM_PAR_SXY]*X*Y; + psF32 r = exp(-z); + psF32 q = PAR[PM_PAR_I0]*r; + psF32 f = q + PAR[PM_PAR_SKY]; + + if (deriv != NULL) { + psF32 *dPAR = deriv->data.F32; + dPAR[PM_PAR_SKY] = +1.0; + dPAR[PM_PAR_I0] = +r; + dPAR[PM_PAR_XPOS] = q*(2*px/PAR[PM_PAR_SXX] + Y*PAR[PM_PAR_SXY]); + dPAR[PM_PAR_YPOS] = q*(2*py/PAR[PM_PAR_SYY] + X*PAR[PM_PAR_SXY]); + // the extra factor of 2 below is needed to avoid excessive swings + dPAR[PM_PAR_SXX] = +4.0*q*px*px/PAR[PM_PAR_SXX]; + dPAR[PM_PAR_SYY] = +4.0*q*py*py/PAR[PM_PAR_SYY]; + dPAR[PM_PAR_SXY] = -q*X*Y; + } + return(f); +} + +// define the parameter limits +// AR_MAX is the maximum allowed axis ratio +// AR_RATIO is ((1-R)/(1+R))^2 where R = AR_MAX^(-2) +# define AR_MAX 20.0 +# define AR_RATIO 0.99 +bool PM_MODEL_LIMITS (psMinConstraintMode mode, int nParam, float *params, float *beta) +{ + float beta_lim = 0, params_min = 0, params_max = 0; + float f1 = 0, f2 = 0, q1 = 0, q2 = 0; + + // we need to calculate the limits for SXY specially + if (nParam == PM_PAR_SXY) { + f1 = 1.0 / PS_SQR(params[PM_PAR_SYY]) + 1.0 / PS_SQR(params[PM_PAR_SXX]); + f2 = 1.0 / PS_SQR(params[PM_PAR_SYY]) - 1.0 / PS_SQR(params[PM_PAR_SXX]); + q1 = PS_SQR(f1)*AR_RATIO - PS_SQR(f2); + assert (q1 > 0); + q2 = 0.5*sqrt (q1); + } + + switch (mode) { + case PS_MINIMIZE_BETA_LIMIT: + switch (nParam) { + case PM_PAR_SKY: + beta_lim = 1000; + break; + case PM_PAR_I0: + beta_lim = 3e6; + break; + case PM_PAR_XPOS: + beta_lim = 5; + break; + case PM_PAR_YPOS: + beta_lim = 5; + break; + case PM_PAR_SXX: + beta_lim = 0.5; + break; + case PM_PAR_SYY: + beta_lim = 0.5; + break; + case PM_PAR_SXY: + beta_lim = q2; + break; + default: + psAbort("invalid parameter %d for beta test", nParam); + } + if (fabs(beta[nParam]) > fabs(beta_lim)) { + beta[nParam] = (beta[nParam] > 0) ? fabs(beta_lim) : -fabs(beta_lim); + return false; + } + return true; + case PS_MINIMIZE_PARAM_MIN: + switch (nParam) { + case PM_PAR_SKY: + params_min = -1000; + break; + case PM_PAR_I0: + params_min = 0; + break; + case PM_PAR_XPOS: + params_min = -100; + break; + case PM_PAR_YPOS: + params_min = -100; + break; + case PM_PAR_SXX: + params_min = 0.5; + break; + case PM_PAR_SYY: + params_min = 0.5; + break; + case PM_PAR_SXY: + params_min = -q2; + break; + default: + psAbort("invalid parameter %d for param min test", nParam); + } + if (params[nParam] < params_min) { + params[nParam] = params_min; + return false; + } + return true; + case PS_MINIMIZE_PARAM_MAX: + switch (nParam) { + case PM_PAR_SKY: + params_max = 1e5; + break; + case PM_PAR_I0: + params_max = 1e8; + break; + case PM_PAR_XPOS: + params_max = 1e4; + break; + case PM_PAR_YPOS: + params_max = 1e4; + break; + case PM_PAR_SXX: + params_max = 100; + break; + case PM_PAR_SYY: + params_max = 100; + break; + case PM_PAR_SXY: + params_max = +q2; + break; + default: + psAbort("invalid parameter %d for param max test", nParam); + } + if (params[nParam] > params_max) { + params[nParam] = params_max; + return false; + } + return true; + default: + psAbort("invalid choice for limits"); + } + psAbort("should not reach here"); + return false; +} + +// make an initial guess for parameters +bool PM_MODEL_GUESS (pmModel *model, pmSource *source) +{ + pmMoments *moments = source->moments; + psF32 *PAR = model->params->data.F32; + + psEllipseMoments emoments; + emoments.x2 = moments->Sx; + emoments.y2 = moments->Sy; + emoments.xy = moments->Sxy; + + // force the axis ratio to be < 20.0 + psEllipseAxes axes = psEllipseMomentsToAxes (emoments, 20.0); + psEllipseShape shape = psEllipseAxesToShape (axes); + + PAR[PM_PAR_SKY] = moments->Sky; + PAR[PM_PAR_I0] = moments->Peak - moments->Sky; + PAR[PM_PAR_XPOS] = moments->x; + PAR[PM_PAR_YPOS] = moments->y; + PAR[PM_PAR_SXX] = PS_MAX(0.5, M_SQRT2*shape.sx); + PAR[PM_PAR_SYY] = PS_MAX(0.5, M_SQRT2*shape.sy); + PAR[PM_PAR_SXY] = shape.sxy; + return(true); +} + +psF64 PM_MODEL_FLUX (const psVector *params) +{ + + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // Area is equivalent to 2 pi sigma^2 + // axes ratio < 20 + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 Area = 2.0 * M_PI * axes.major * axes.minor; + + psF64 Flux = params->data.F32[PM_PAR_I0] * Area; + + return(Flux); +} + +// return the radius which yields the requested flux +// this function is never allowed to return <= 0 +psF64 PM_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + if (flux <= 0) + return (1.0); + if (PAR[PM_PAR_I0] <= 0) + return (1.0); + if (flux >= PAR[PM_PAR_I0]) + return (1.0); + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 radius = axes.major * sqrt (2.0 * log(PAR[PM_PAR_I0] / flux)); + return (radius); +} + +// construct the PSF model from the FLT model and the psf +bool PM_MODEL_FROM_PSF (pmModel *modelPSF, pmModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + // we require these two parameters to exist + assert (psf->params_NEW->n > PM_PAR_YPOS); + assert (psf->params_NEW->n > PM_PAR_XPOS); + + // supply the model-fitted parameters, or copy from the input + for (int i = 0; i < psf->params_NEW->n; i++) { + if (psf->params_NEW->data[i] == NULL) { + out[i] = in[i]; + } else { + psPolynomial2D *poly = psf->params_NEW->data[i]; + out[i] = psPolynomial2DEval(poly, in[PM_PAR_XPOS], in[PM_PAR_YPOS]); + } + } + + // the 2D model for SXY actually fits SXY / (SXX^-2 + SYY^-2); correct here + out[PM_PAR_SXY] = pmPSF_SXYtoModel (out); + + // apply the model limits here: this truncates excessive extrapolation + for (int i = 0; i < psf->params_NEW->n; i++) { + // apply the limits to all components or just the psf-model parameters? + if (psf->params_NEW->data[i] == NULL) + continue; + PM_MODEL_LIMITS (PS_MINIMIZE_PARAM_MIN, i, out, NULL); + PM_MODEL_LIMITS (PS_MINIMIZE_PARAM_MAX, i, out, NULL); + } + return(true); +} + +// check the status of the fitted model +// this test is invalid if the parameters are derived +// from the PSF model +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + if (status) + return true; + return false; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_PGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_PGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_PGAUSS.c (revision 12167) @@ -0,0 +1,324 @@ +/****************************************************************************** + * this file defines the PGAUSS source shape model. Note that these model functions are loaded + * by pmModelGroup.c using 'include', and thus need no 'include' statements of their own. The + * models use a psVector to represent the set of parameters, with the sequence used to specify + * the meaning of the parameter. The meaning of the parameters may thus vary depending on the + * specifics of the model. All models which are used a PSF representations share a few + * parameters, for which # define names are listed in pmModel.h: + + Gaussian taylor expansion + 1 / (1 + z + z^2/2 + z^3/6) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) * SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) * SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + *****************************************************************************/ + +# define PM_MODEL_FUNC pmModelFunc_PGAUSS +# define PM_MODEL_FLUX pmModelFlux_PGAUSS +# define PM_MODEL_GUESS pmModelGuess_PGAUSS +# define PM_MODEL_LIMITS pmModelLimits_PGAUSS +# define PM_MODEL_RADIUS pmModelRadius_PGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_PGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_PGAUSS + +// the model is a function of the pixel coordinate (pixcoord[0,1] = x,y) +psF32 PM_MODEL_FUNC(psVector *deriv, + const psVector *params, + const psVector *pixcoord) +{ + psF32 *PAR = params->data.F32; + + psF32 X = pixcoord->data.F32[0] - PAR[PM_PAR_XPOS]; + psF32 Y = pixcoord->data.F32[1] - PAR[PM_PAR_YPOS]; + psF32 px = X / PAR[PM_PAR_SXX]; + psF32 py = Y / PAR[PM_PAR_SYY]; + psF32 z = PS_SQR(px) + PS_SQR(py) + PAR[PM_PAR_SXY]*X*Y; + psF32 t = 1 + z + z*z/2.0; + psF32 r = 1.0 / (t + z*z*z/6.0); /* exp (-Z) */ + psF32 f = PAR[PM_PAR_I0]*r + PAR[PM_PAR_SKY]; + + if (deriv != NULL) { + psF32 *dPAR = deriv->data.F32; + psF32 q = PAR[PM_PAR_I0]*r*r*t; + dPAR[PM_PAR_SKY] = +1.0; + dPAR[PM_PAR_I0] = +r; + dPAR[PM_PAR_XPOS] = q*(2.0*px/PAR[PM_PAR_SXX] + Y*PAR[PM_PAR_SXY]); + dPAR[PM_PAR_YPOS] = q*(2.0*py/PAR[PM_PAR_SYY] + X*PAR[PM_PAR_SXY]); + // the extra factor of 2 below is needed to avoid excessive swings + dPAR[PM_PAR_SXX] = +4.0*q*px*px/PAR[PM_PAR_SXX]; + dPAR[PM_PAR_SYY] = +4.0*q*py*py/PAR[PM_PAR_SYY]; + dPAR[PM_PAR_SXY] = -q*X*Y; + } + return(f); +} + +// define the parameter limits +// AR_MAX is the maximum allowed axis ratio +// AR_RATIO is ((1-R)/(1+R))^2 where R = AR_MAX^(-2) +# define AR_MAX 20.0 +# define AR_RATIO 0.99 +bool PM_MODEL_LIMITS (psMinConstraintMode mode, int nParam, float *params, float *beta) +{ + float beta_lim = 0, params_min = 0, params_max = 0; + float f1 = 0, f2 = 0, q1 = 0, q2 = 0; + + // we need to calculate the limits for SXY specially + if (nParam == PM_PAR_SXY) { + f1 = 1.0 / PS_SQR(params[PM_PAR_SYY]) + 1.0 / PS_SQR(params[PM_PAR_SXX]); + f2 = 1.0 / PS_SQR(params[PM_PAR_SYY]) - 1.0 / PS_SQR(params[PM_PAR_SXX]); + q1 = PS_SQR(f1)*AR_RATIO - PS_SQR(f2); + assert (q1 > 0); + q2 = 0.5*sqrt (q1); + } + + switch (mode) { + case PS_MINIMIZE_BETA_LIMIT: + switch (nParam) { + case PM_PAR_SKY: + beta_lim = 1000; + break; + case PM_PAR_I0: + beta_lim = 3e6; + break; + case PM_PAR_XPOS: + beta_lim = 5; + break; + case PM_PAR_YPOS: + beta_lim = 5; + break; + case PM_PAR_SXX: + beta_lim = 0.5; + break; + case PM_PAR_SYY: + beta_lim = 0.5; + break; + case PM_PAR_SXY: + beta_lim = q2; + break; + default: + psAbort("invalid parameter %d for beta test", nParam); + } + if (fabs(beta[nParam]) > fabs(beta_lim)) { + beta[nParam] = (beta[nParam] > 0) ? fabs(beta_lim) : -fabs(beta_lim); + return false; + } + return true; + case PS_MINIMIZE_PARAM_MIN: + switch (nParam) { + case PM_PAR_SKY: + params_min = -1000; + break; + case PM_PAR_I0: + params_min = 0; + break; + case PM_PAR_XPOS: + params_min = -100; + break; + case PM_PAR_YPOS: + params_min = -100; + break; + case PM_PAR_SXX: + params_min = 0.5; + break; + case PM_PAR_SYY: + params_min = 0.5; + break; + case PM_PAR_SXY: + params_min = -q2; + break; + default: + psAbort("invalid parameter %d for param min test", nParam); + } + if (params[nParam] < params_min) { + params[nParam] = params_min; + return false; + } + return true; + case PS_MINIMIZE_PARAM_MAX: + switch (nParam) { + case PM_PAR_SKY: + params_max = 1e5; + break; + case PM_PAR_I0: + params_max = 1e8; + break; + case PM_PAR_XPOS: + params_max = 1e4; + break; + case PM_PAR_YPOS: + params_max = 1e4; + break; + case PM_PAR_SXX: + params_max = 100; + break; + case PM_PAR_SYY: + params_max = 100; + break; + case PM_PAR_SXY: + params_max = +q2; + break; + default: + psAbort("invalid parameter %d for param max test", nParam); + } + if (params[nParam] > params_max) { + params[nParam] = params_max; + return false; + } + return true; + default: + psAbort("invalid choice for limits"); + } + psAbort("should not reach here"); + return false; +} + +// make an initial guess for parameters +bool PM_MODEL_GUESS (pmModel *model, pmSource *source) +{ + pmMoments *moments = source->moments; + psF32 *PAR = model->params->data.F32; + + psEllipseMoments emoments; + emoments.x2 = moments->Sx; + emoments.y2 = moments->Sx; + emoments.xy = moments->Sxy; + + psEllipseAxes axes = psEllipseMomentsToAxes (emoments, 20.0); + psEllipseShape shape = psEllipseAxesToShape (axes); + + PAR[PM_PAR_SKY] = moments->Sky; + PAR[PM_PAR_I0] = moments->Peak - moments->Sky; + PAR[PM_PAR_XPOS] = moments->x; // XXX use peak->xf, peak->yf? + PAR[PM_PAR_YPOS] = moments->y; + PAR[PM_PAR_SXX] = PS_MAX(0.5, M_SQRT2*shape.sx); + PAR[PM_PAR_SYY] = PS_MAX(0.5, M_SQRT2*shape.sy); + PAR[PM_PAR_SXY] = shape.sxy; + return(true); +} + +psF64 PM_MODEL_FLUX(const psVector *params) +{ + float norm, z; + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // Area is equivalent to 2 pi sigma^2 + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 Area = 2.0 * M_PI * axes.major * axes.minor; + + // the area needs to be multiplied by the integral of f(z) + norm = 0.0; + + # define DZ 0.25 + + float f0 = 1.0; + float f1, f2; + for (z = DZ; z < 50; z += DZ) { + f1 = 1.0 / (1 + z + z*z/2.0 + z*z*z/6.0); + z += DZ; + f2 = 1.0 / (1 + z + z*z/2.0 + z*z*z/6.0); + norm += f0 + 4*f1 + f2; + f0 = f2; + } + norm *= DZ / 3.0; + + psF64 Flux = PAR[PM_PAR_I0] * Area * norm; + + return(Flux); +} + +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PM_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + if (flux <= 0) + return (1.0); + if (PAR[PM_PAR_I0] <= 0) + return (1.0); + if (flux >= PAR[PM_PAR_I0]) + return (1.0); + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // this estimates the radius assuming f(z) is roughly exp(-z) + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 radius = axes.major * sqrt (2.0 * log(PAR[PM_PAR_I0] / flux)); + + if (isnan(radius)) + psAbort("error in code: radius is NaN"); + if (radius < 0) + psAbort("error in code: radius is negative"); + + return (radius); +} + +bool PM_MODEL_FROM_PSF (pmModel *modelPSF, pmModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + // we require these two parameters to exist + assert (psf->params_NEW->n > PM_PAR_YPOS); + assert (psf->params_NEW->n > PM_PAR_XPOS); + + for (int i = 0; i < psf->params_NEW->n; i++) { + if (psf->params_NEW->data[i] == NULL) { + out[i] = in[i]; + } else { + psPolynomial2D *poly = psf->params_NEW->data[i]; + out[i] = psPolynomial2DEval(poly, in[PM_PAR_XPOS], in[PM_PAR_YPOS]); + } + } + + // the 2D model for SXY actually fits SXY / (SXX^-2 + SYY^-2); correct here + out[PM_PAR_SXY] = pmPSF_SXYtoModel (out); + + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_QGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_QGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_QGAUSS.c (revision 12167) @@ -0,0 +1,390 @@ +/****************************************************************************** + * this file defines the QGAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fitted linear term + 1 / (1 + kz + z^2.25) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) / SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) / SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - amplitude of the linear component (k) + *****************************************************************************/ + +# define PM_MODEL_FUNC pmModelFunc_QGAUSS +# define PM_MODEL_FLUX pmModelFlux_QGAUSS +# define PM_MODEL_GUESS pmModelGuess_QGAUSS +# define PM_MODEL_LIMITS pmModelLimits_QGAUSS +# define PM_MODEL_RADIUS pmModelRadius_QGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_QGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_QGAUSS + +psF32 PM_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *pixcoord) +{ + psF32 *PAR = params->data.F32; + + psF32 X = pixcoord->data.F32[0] - PAR[PM_PAR_XPOS]; + psF32 Y = pixcoord->data.F32[1] - PAR[PM_PAR_YPOS]; + psF32 px = X / PAR[PM_PAR_SXX]; + psF32 py = Y / PAR[PM_PAR_SYY]; + psF32 z = PS_SQR(px) + PS_SQR(py) + PAR[PM_PAR_SXY]*X*Y; + + // XXX if the elliptical contour is defined in valid way, this step should not be required. + // other models (like PGAUSS) don't use fractional powers, and thus do not have NaN values + // for negative values of z + // XXX use an assert here to force the elliptical parameters to be correctly determined + // if (z < 0) z = 0; + assert (z >= 0); + + psF32 zp = pow(z,1.25); + psF32 r = 1.0 / (1 + PAR[PM_PAR_7]*z + z*zp); + + psF32 r1 = PAR[PM_PAR_I0]*r; + psF32 f = r1 + PAR[PM_PAR_SKY]; + + if (deriv != NULL) { + psF32 *dPAR = deriv->data.F32; + + // note difference from a pure gaussian: q = params->data.F32[PM_PAR_I0]*r + psF32 t = r1*r; + psF32 q = t*(PAR[PM_PAR_7] + 2.25*zp); + + dPAR[PM_PAR_SKY] = +1.0; + dPAR[PM_PAR_I0] = +r; + dPAR[PM_PAR_XPOS] = q*(2.0*px/PAR[PM_PAR_SXX] + Y*PAR[PM_PAR_SXY]); + dPAR[PM_PAR_YPOS] = q*(2.0*py/PAR[PM_PAR_SYY] + X*PAR[PM_PAR_SXY]); + // the extra factor of 2 below is needed to avoid excessive swings + dPAR[PM_PAR_SXX] = +4.0*q*px*px/PAR[PM_PAR_SXX]; + dPAR[PM_PAR_SYY] = +4.0*q*py*py/PAR[PM_PAR_SYY]; + dPAR[PM_PAR_SXY] = -q*X*Y; + dPAR[PM_PAR_7] = -t*z; + } + return(f); +} + +// define the parameter limits +// AR_MAX is the maximum allowed axis ratio +// AR_RATIO is ((1-R)/(1+R))^2 where R = AR_MAX^(-2) +# define AR_MAX 20.0 +# define AR_RATIO 0.99 +bool PM_MODEL_LIMITS (psMinConstraintMode mode, int nParam, float *params, float *beta) +{ + float beta_lim = 0, params_min = 0, params_max = 0; + float f1 = 0, f2 = 0, q1 = 0, q2 = 0; + + // we need to calculate the limits for SXY specially + if (nParam == PM_PAR_SXY) { + f1 = 1.0 / PS_SQR(params[PM_PAR_SYY]) + 1.0 / PS_SQR(params[PM_PAR_SXX]); + f2 = 1.0 / PS_SQR(params[PM_PAR_SYY]) - 1.0 / PS_SQR(params[PM_PAR_SXX]); + q1 = PS_SQR(f1)*AR_RATIO - PS_SQR(f2); + assert (q1 > 0); + q2 = 0.5*sqrt (q1); + } + + switch (mode) { + case PS_MINIMIZE_BETA_LIMIT: + switch (nParam) { + case PM_PAR_SKY: + beta_lim = 1000; + break; + case PM_PAR_I0: + beta_lim = 3e6; + break; + case PM_PAR_XPOS: + beta_lim = 5; + break; + case PM_PAR_YPOS: + beta_lim = 5; + break; + case PM_PAR_SXX: + beta_lim = 0.5; + break; + case PM_PAR_SYY: + beta_lim = 0.5; + break; + case PM_PAR_SXY: + beta_lim = q2; + break; + case PM_PAR_7: + beta_lim = 0.5; + break; + default: + psAbort("invalid parameter %d for beta test", nParam); + } + if (fabs(beta[nParam]) > fabs(beta_lim)) { + beta[nParam] = (beta[nParam] > 0) ? fabs(beta_lim) : -fabs(beta_lim); + return false; + } + return true; + case PS_MINIMIZE_PARAM_MIN: + switch (nParam) { + case PM_PAR_SKY: + params_min = -1000; + break; + case PM_PAR_I0: + params_min = 0; + break; + case PM_PAR_XPOS: + params_min = -100; + break; + case PM_PAR_YPOS: + params_min = -100; + break; + case PM_PAR_SXX: + params_min = 0.5; + break; + case PM_PAR_SYY: + params_min = 0.5; + break; + case PM_PAR_SXY: + params_min = -q2; + break; + case PM_PAR_7: + params_min = 0.1; + break; + default: + psAbort("invalid parameter %d for param min test", nParam); + } + if (params[nParam] < params_min) { + params[nParam] = params_min; + return false; + } + return true; + case PS_MINIMIZE_PARAM_MAX: + switch (nParam) { + case PM_PAR_SKY: + params_max = 1e5; + break; + case PM_PAR_I0: + params_max = 1e8; + break; + case PM_PAR_XPOS: + params_max = 1e4; + break; + case PM_PAR_YPOS: + params_max = 1e4; + break; + case PM_PAR_SXX: + params_max = 100; + break; + case PM_PAR_SYY: + params_max = 100; + break; + case PM_PAR_SXY: + params_max = +q2; + break; + case PM_PAR_7: + params_max = 10.0; + break; + default: + psAbort("invalid parameter %d for param max test", nParam); + } + if (params[nParam] > params_max) { + params[nParam] = params_max; + return false; + } + return true; + default: + psAbort("invalid choice for limits"); + } + psAbort("should not reach here"); + return false; +} + + +// make an initial guess for parameters +bool PM_MODEL_GUESS (pmModel *model, pmSource *source) +{ + pmMoments *moments = source->moments; + pmPeak *peak = source->peak; + psF32 *PAR = model->params->data.F32; + + psEllipseMoments emoments; + emoments.x2 = moments->Sx; + emoments.y2 = moments->Sy; + emoments.xy = moments->Sxy; + + // force the axis ratio to be < 20.0 + psEllipseAxes axes = psEllipseMomentsToAxes (emoments, 20.0); + psEllipseShape shape = psEllipseAxesToShape (axes); + + PAR[PM_PAR_SKY] = moments->Sky; + PAR[PM_PAR_I0] = moments->Peak - moments->Sky; + PAR[PM_PAR_XPOS] = peak->x; + PAR[PM_PAR_YPOS] = peak->y; + PAR[PM_PAR_SXX] = PS_MAX(0.5, M_SQRT2*shape.sx); + PAR[PM_PAR_SYY] = PS_MAX(0.5, M_SQRT2*shape.sy); + PAR[PM_PAR_SXY] = shape.sxy; + PAR[PM_PAR_7] = 1.0; + + return(true); +} + +psF64 PM_MODEL_FLUX (const psVector *params) +{ + float z, norm; + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // Area is equivalent to 2 pi sigma^2 + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 Area = 2.0 * M_PI * axes.major * axes.minor; + + // the area needs to be multiplied by the integral of f(z) + norm = 0.0; + + # define DZ 0.25 + + float f0 = 1.0; + float f1, f2; + for (z = DZ; z < 50; z += DZ) { + f1 = 1.0 / (1 + PAR[PM_PAR_7]*z + pow(z, 2.25)); + z += DZ; + f2 = 1.0 / (1 + PAR[PM_PAR_7]*z + pow(z, 2.25)); + norm += f0 + 4*f1 + f2; + f0 = f2; + } + norm *= DZ / 3.0; + + psF64 Flux = PAR[PM_PAR_I0] * Area * norm; + + return(Flux); +} + +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PM_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psF64 z, f; + int Nstep = 0; + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + if (flux <= 0) + return (1.0); + if (PAR[PM_PAR_I0] <= 0) + return (1.0); + if (flux >= PAR[PM_PAR_I0]) + return (1.0); + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + psEllipseAxes axes = psEllipseShapeToAxes (shape, 20.0); + psF64 sigma = axes.major; + + psF64 limit = flux / PAR[PM_PAR_I0]; + + // use the fact that f is monotonically decreasing + z = 0; + Nstep = 0; + + // choose a z value guaranteed to be beyond our limit + float z0 = pow((1.0 / limit), (1.0 / 2.25)); + float z1 = (1.0 / limit) / PAR[PM_PAR_7]; + z1 = PS_MAX (z0, z1); + z0 = 0.0; + + // perform a type of bisection to find the value + float f0 = 1.0 / (1 + PAR[PM_PAR_7]*z0 + pow(z0, 2.25)); + float f1 = 1.0 / (1 + PAR[PM_PAR_7]*z1 + pow(z1, 2.25)); + while ((Nstep < 10) && (fabs(z1 - z0) > 0.5)) { + z = 0.5*(z0 + z1); + f = 1.0 / (1 + PAR[PM_PAR_7]*z + pow(z, 2.25)); + if (f > limit) { + z0 = z; + f0 = f; + } else { + z1 = z; + f1 = f; + } + Nstep ++; + } + psF64 radius = sigma * sqrt (2.0 * z); + + if (isnan(radius)) + psAbort("error in code: radius is NaN"); + + return (radius); +} + +bool PM_MODEL_FROM_PSF (pmModel *modelPSF, pmModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + // we require these two parameters to exist + assert (psf->params_NEW->n > PM_PAR_YPOS); + assert (psf->params_NEW->n > PM_PAR_XPOS); + + for (int i = 0; i < psf->params_NEW->n; i++) { + if (psf->params_NEW->data[i] == NULL) { + out[i] = in[i]; + } else { + psPolynomial2D *poly = psf->params_NEW->data[i]; + out[i] = psPolynomial2DEval(poly, in[PM_PAR_XPOS], in[PM_PAR_YPOS]); + } + } + + // the 2D model for SXY actually fits SXY / (SXX^-2 + SYY^-2); correct here + out[PM_PAR_SXY] = pmPSF_SXYtoModel (out); + + // apply the model limits here: this truncates excessive extrapolation + for (int i = 0; i < psf->params_NEW->n; i++) { + // apply the limits to all components or just the psf-model parameters? + if (psf->params_NEW->data[i] == NULL) + continue; + PM_MODEL_LIMITS (PS_MINIMIZE_PARAM_MIN, i, out, NULL); + PM_MODEL_LIMITS (PS_MINIMIZE_PARAM_MAX, i, out, NULL); + } + + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_RGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_RGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_RGAUSS.c (revision 12167) @@ -0,0 +1,279 @@ +/****************************************************************************** + * this file defines the RGAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fitted slope + 1 / (1 + z + z^alpha) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) / SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) / SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - power-law slope (alpha) + *****************************************************************************/ + +# define PM_MODEL_FUNC pmModelFunc_RGAUSS +# define PM_MODEL_FLUX pmModelFlux_RGAUSS +# define PM_MODEL_GUESS pmModelGuess_RGAUSS +# define PM_MODEL_LIMITS pmModelLimits_RGAUSS +# define PM_MODEL_RADIUS pmModelRadius_RGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_RGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_RGAUSS + +psF64 PS_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *pixcoord) +{ + psF32 *PAR = params->data.F32; + + psF32 X = pixcoord->data.F32[0] - PAR[PM_PAR_XPOS]; + psF32 Y = pixcoord->data.F32[1] - PAR[PM_PAR_YPOS]; + psF32 px = X / PAR[PM_PAR_SXX]; + psF32 py = Y / PAR[PM_PAR_SYY]; + psF32 z = PS_SQR(px) + PS_SQR(py) + X*Y*PAR[PM_PAR_SXY]; + + psF32 p = pow(z, PAR[PM_PAR_7] - 1.0); + psF32 r = 1.0 / (1 + z + z*p); + psF32 f = PAR[PM_PAR_I0]*r + PAR[PM_PAR_SKY]; + + if (deriv != NULL) { + psF32 *dPAR = deriv->data.F32; + + // note difference from a pure gaussian: q = params->data.F32[PM_PAR_I0]*r + psF32 t = PAR[PM_PAR_I0]*r*r; + psF32 q = t*(1 + PAR[PM_PAR_7]*p); + + dPAR[PM_PAR_SKY] = +1.0; + dPAR[PM_PAR_I0] = +r; + dPAR[PM_PAR_XPOS] = q*(2.0*px/PAR[PM_PAR_SXX] + Y*PAR[PM_PAR_SXY]); + dPAR[PM_PAR_YPOS] = q*(2.0*py/PAR[PM_PAR_SYY] + X*PAR[PM_PAR_SXY]); + dPAR[PM_PAR_SXX] = +2.0*q*px*px/PAR[PM_PAR_SXX]; + dPAR[PM_PAR_SYY] = +2.0*q*py*py/PAR[PM_PAR_SYY]; + dPAR[PM_PAR_SXY] = -q*X*Y; + dPAR[PM_PAR_7] = -5.0*t*log(z)*p*z; + } + return(f); +} + +bool PM_MODEL_LIMITS (psVector **beta_lim, psVector **params_min, psVector **params_max) +{ + + *beta_lim = psVectorAlloc (8, PS_TYPE_F32); + *params_min = psVectorAlloc (8, PS_TYPE_F32); + *params_max = psVectorAlloc (8, PS_TYPE_F32); + + beta_lim[0][0].data.F32[PM_PAR_SKY] = 1000; + beta_lim[0][0].data.F32[PM_PAR_I0] = 3e6; + beta_lim[0][0].data.F32[PM_PAR_XPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_YPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_SXX] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SYY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SXY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_7] = 0.5; + + params_min[0][0].data.F32[PM_PAR_SKY] = -1000; + params_min[0][0].data.F32[PM_PAR_I0] = 0; + params_min[0][0].data.F32[PM_PAR_XPOS] = -100; + params_min[0][0].data.F32[PM_PAR_YPOS] = -100; + params_min[0][0].data.F32[PM_PAR_SXX] = 0.5; + params_min[0][0].data.F32[PM_PAR_SYY] = 0.5; + params_min[0][0].data.F32[PM_PAR_SXY] = -5.0; + params_min[0][0].data.F32[PM_PAR_7] = 1.25; + + params_max[0][0].data.F32[PM_PAR_SKY] = 1e5; + params_max[0][0].data.F32[PM_PAR_I0] = 1e8; + params_max[0][0].data.F32[PM_PAR_XPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_YPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_SXX] = 100.0; + params_max[0][0].data.F32[PM_PAR_SYY] = 100.0; + params_max[0][0].data.F32[PM_PAR_SXY] = +5.0; + params_max[0][0].data.F32[PM_PAR_7] = 4.0; + + return (TRUE); +} + +bool PS_MODEL_GUESS (psModel *model, psSource *source) +{ + pmMoments *moments = source->moments; + pmPeak *peak = source->peak; + psF32 *PAR = model->params->data.F32; + + psEllipseAxes axes; + psEllipseShape shape; + psEllipseMoments tmpMoments; + + // XXX fix this stuff : should be using correct ellipse relationships... + tmpMoments.x2 = PS_SQR(source->moments->Sx); + tmpMoments.y2 = PS_SQR(source->moments->Sy); + tmpMoments.xy = source->moments->Sxy; + + axes = psEllipseMomentsToAxes(tmpMoments); + shape = psEllipseAxesToShape(axes); + + PAR[PM_PAR_SKY] = moments->Sky; + PAR[PM_PAR_I0] = moments->Peak - moments->Sky; + PAR[PM_PAR_XPOS] = peak->x; + PAR[PM_PAR_YPOS] = peak->y; + PAR[PM_PAR_SXX] = PS_MAX(0.5, moments->Sx); + PAR[PM_PAR_SYY] = PS_MAX(0.5, moments->Sy); + PAR[PM_PAR_SXY] = shape.sxy; + PAR[PM_PAR_7] = 2.0; + return(true); +} + +psF64 PS_MODEL_FLUX (const psVector *params) +{ + float norm, z; + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // Area is equivalent to 2 pi sigma^2 + psEllipseAxes axes = psEllipseShapeToAxes (shape); + psF64 Area = 2.0 * M_PI * axes.major * axes.minor; + + // the area needs to be multiplied by the integral of f(z) + norm = 0.0; + + # define DZ 0.25 + + float f0 = 1.0; + float f1, f2; + for (z = DZ; z < 50; z += DZ) { + f1 = 1.0 / (1 + z + pow(z, PAR[PM_PAR_7])); + z += DZ; + f2 = 1.0 / (1 + z + pow(z, PAR[PM_PAR_7])); + norm += f0 + 4*f1 + f2; + f0 = f2; + } + norm *= DZ / 3.0; + + psF64 Flux = PAR[PM_PAR_I0] * Area * norm; + + return(Flux); +} + +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PS_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psF64 z, f, p; + psEllipseShape shape; + + psF32 *PAR = params->data.F32; + + if (flux <= 0) + return (1.0); + if (PAR[PM_PAR_I0] <= 0) + return (1.0); + if (flux >= PAR[PM_PAR_I0]) + return (1.0); + + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + psEllipseAxes axes = psEllipseShapeToAxes (shape); + psF64 sigma = axes.major; + + psF64 dz = 1.0 / (2.0 * sigma*sigma); + psF64 limit = flux / PAR[PM_PAR_I0]; + + // use the fact that f is monotonically decreasing + z = 0; + Nstep = 0; + + // choose a z value guaranteed to be beyond our limit + float z0 = pow((1.0 / limit), (1.0 / 2.25)); + float z1 = (1.0 / limit) / PAR[PM_PAR_7]; + z1 = PS_MAX (z0, z1); + z0 = 0.0; + + // perform a type of bisection to find the value + float f0 = 1.0 / (1 + z0 + pow(z0, PAR[PM_PAR_7])); + float f1 = 1.0 / (1 + z1 + pow(z1, PAR[PM_PAR_7])); + while ((Nstep < 10) && (fabs(z1 - z0) > 0.5)) { + z = 0.5*(z0 + z1); + f = 1.0 / (1 + z + pow(z, PAR[PM_PAR_7])); + if (f > limit) { + z0 = z; + f0 = f; + } else { + z1 = z; + f1 = f; + } + Nstep ++; + } + psF64 radius = sigma * sqrt (2.0 * z); + + if (isnan(radius)) + psAbort("error in code: radius is NaN"); + + return (radius); +} + +bool PS_MODEL_FROM_PSF (psModel *modelPSF, psModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + // we require these two parameters to exist + assert (psf->params_NEW->n > PM_PAR_YPOS); + assert (psf->params_NEW->n > PM_PAR_XPOS); + + for (int i = 0; i < psf->params_NEW->n; i++) { + if (psf->params_NEW->data[i] == NULL) { + out[i] = in[i]; + } else { + psPolynomial2D *poly = psf->params_NEW->data[i]; + out[i] = psPolynomial2DEval(poly, in[PM_PAR_XPOS], in[PM_PAR_YPOS]); + } + } + + // the 2D model for SXY actually fits SXY / (SXX^-2 + SYY^-2); correct here + out[PM_PAR_SXY] = pmPSF_SXYtoModel (out); + + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_SGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_SGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_SGAUSS.c (revision 12167) @@ -0,0 +1,386 @@ +/****************************************************************************** + * this file defines the SGAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fitted slope and outer tidal radius + 1 / (1 + z^N + kz^4) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) / SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) / SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - slope of power-law component (N) + * PM_PAR_8 8 - amplitude of the tidal cutoff (k) + *****************************************************************************/ + +/*** + XXXX the model in this file needs to be tested more carefully. + the code for guessing the power-law slope based on the radial profile + is either too slow or does not work well. + fix up the code to follow conventions in the other model function files. +***/ + +XXX broken code + +# define PM_MODEL_FUNC pmModelFunc_SGAUSS +# define PM_MODEL_FLUX pmModelFlux_SGAUSS +# define PM_MODEL_GUESS pmModelGuess_SGAUSS +# define PM_MODEL_LIMITS pmModelLimits_SGAUSS +# define PM_MODEL_RADIUS pmModelRadius_SGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_SGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_SGAUSS + +psF64 psImageEllipseContour (psEllipseAxes axes, double xc, double yc, psImage *image); + +psF32 PM_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *x) +{ + psF32 *PAR = params->data.F32; + + psF32 X = x->data.F32[0] - PAR[2]; + psF32 Y = x->data.F32[1] - PAR[3]; + psF32 px = PAR[4]*X; + psF32 py = PAR[5]*Y; + psF32 z = PS_MAX((0.5*PS_SQR(px) + 0.5*PS_SQR(py) + PAR[6]*X*Y), 1e-8); + // note that if z -> 0, dPAR[7] -> -inf + // also z^(PAR[7]-1) -> Inf + + psF32 pr = z*PAR[8]; + psF32 pr3 = pr*pr*pr; + psF32 p = pow(z, PAR[7] - 1.0); + psF32 r = 1.0 / (1 + z*p + pr*pr3); + psF32 f = PAR[1]*r + PAR[0]; + + if (deriv != NULL) { + // note difference from a pure gaussian: q = params->data.F32[1]*r + psF32 t = PAR[1]*r*r; + psF32 q = t*(PAR[7]*p + 4*PAR[8]*pr3); + + deriv->data.F32[0] = +1.0; + deriv->data.F32[1] = +r; + deriv->data.F32[2] = q*(2.0*px*PAR[4] + PAR[6]*Y); + deriv->data.F32[3] = q*(2.0*py*PAR[5] + PAR[6]*X); + deriv->data.F32[4] = -2.0*q*px*X; + deriv->data.F32[5] = -2.0*q*py*Y; + deriv->data.F32[6] = -q*X*Y; + deriv->data.F32[7] = -2*t*log(z)*z*p; + deriv->data.F32[8] = -2*t*4*z*pr3; + } + return(f); +} + +bool PM_MODEL_LIMITS (psVector **beta_lim, psVector **params_min, psVector **params_max) +{ + + *beta_lim = psVectorAlloc (9, PS_TYPE_F32); + *params_min = psVectorAlloc (9, PS_TYPE_F32); + *params_max = psVectorAlloc (9, PS_TYPE_F32); + + beta_lim[0][0].data.F32[0] = 1000; + beta_lim[0][0].data.F32[1] = 10000; + beta_lim[0][0].data.F32[2] = 5; + beta_lim[0][0].data.F32[3] = 5; + beta_lim[0][0].data.F32[4] = 0.5; + beta_lim[0][0].data.F32[5] = 0.5; + beta_lim[0][0].data.F32[6] = 0.5; + beta_lim[0][0].data.F32[7] = 0.5; + beta_lim[0][0].data.F32[8] = 0.05; + + params_min[0][0].data.F32[0] = -1000; + params_min[0][0].data.F32[1] = 0; + params_min[0][0].data.F32[2] = -100; + params_min[0][0].data.F32[3] = -100; + params_min[0][0].data.F32[4] = 0.01; + params_min[0][0].data.F32[5] = 0.01; + params_min[0][0].data.F32[6] = -5.0; + params_min[0][0].data.F32[7] = 0.5; + params_min[0][0].data.F32[8] = 0.001; + + params_max[0][0].data.F32[0] = 1e5; + params_max[0][0].data.F32[1] = 1e6; + params_max[0][0].data.F32[2] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[3] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[4] = 2.0; + params_max[0][0].data.F32[5] = 2.0; + params_max[0][0].data.F32[6] = +3.0; + params_max[0][0].data.F32[7] = 5.0; + params_max[0][0].data.F32[8] = 0.5; + + return (TRUE); +} + +bool PM_MODEL_GUESS (pmModel *model, pmSource *source) +{ + + pmMoments *sMoments = source->moments; + pmPeak *peak = source->peak; + psF32 *params = model->params->data.F32; + + psEllipseAxes axes; + psEllipseShape shape; + psEllipseMoments moments; + + moments.x2 = PS_SQR(sMoments->Sx); + moments.y2 = PS_SQR(sMoments->Sy); + moments.xy = sMoments->Sxy; + + // solve the math to go from Moments To Shape + axes = psEllipseMomentsToAxes(moments); + shape = psEllipseAxesToShape(axes); + + params[0] = sMoments->Sky; + params[1] = sMoments->Peak - sMoments->Sky; + params[2] = peak->x; + params[3] = peak->y; + params[4] = 1.0 / shape.sx; + params[5] = 1.0 / shape.sy; + params[6] = shape.sxy; + + # if (0) + + f1 = psImageEllipseContour (axes, peak->x, peak->y, source->pixels); + axes.major *= 2.0; + axes.minor *= 2.0; + f2 = psImageEllipseContour (axes, peak->x, peak->y, source->pixels); + + if (f1 > f2) { + params[7] = PS_MIN (3.0, PS_MAX (0.5, log(2.0*(f1/f2) - 1.0) / log(2.0))); + } else { + params[7] = 0.5; + } + # endif + + params[7] = 1.8; + params[8] = 0.1; + + + return(true); +} + +psF64 PM_MODEL_FLUX (const psVector *params) +{ + float f, norm, z; + + psF32 *PAR = params->data.F32; + + psF64 A1 = PS_SQR(PAR[4]); + psF64 A2 = PS_SQR(PAR[5]); + psF64 A3 = PS_SQR(PAR[6]); + psF64 Area = 2.0 * M_PI / sqrt(A1*A2 - A3); + // Area is equivalent to 2 pi sigma^2 + + // the area needs to be multiplied by the integral of f(z) + norm = 0.0; + for (z = 0.005; z < 50; z += 0.01) { + psF32 pr = PAR[8]*z; + f = 1.0 / (1 + pow(z, PAR[7]) + PS_SQR(PS_SQR(pr))); + norm += f; + } + norm *= 0.01; + + psF64 Flux = PAR[1] * Area * norm; + + return(Flux); +} + +// XXX need to define the radius along the major axis +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PM_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psF64 r, z = 0.0, pr, f; + psF32 *PAR = params->data.F32; + + psEllipseAxes axes; + psEllipseShape shape; + + if (flux <= 0) + return (1.0); + if (PAR[1] <= 0) + return (1.0); + if (flux >= PAR[1]) + return (1.0); + + // convert Sx,Sy,Sxy to major/minor axes + shape.sx = 1.0 / PAR[4]; + shape.sy = 1.0 / PAR[5]; + shape.sxy = PAR[6]; + + axes = psEllipseShapeToAxes (shape); + psF64 dr = 1.0 / axes.major; + psF64 limit = flux / PAR[1]; + + // XXX : we can do this faster with an intelligent starting choice + for (r = 0.0; r < 20.0; r += dr) { + z = PS_SQR(r); + pr = PAR[8]*z; + f = 1.0 / (1 + pow(z, PAR[7]) + PS_SQR(PS_SQR(pr))); + if (f < limit) + break; + } + psF64 radius = 2.0 * axes.major * sqrt (z); + if (isnan(radius)) { + fprintf (stderr, "error in code\n"); + } + return (radius); +} + +bool PM_MODEL_FROM_PSF (pmModel *modelPSF, pmModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + out[0] = in[0]; + out[1] = in[1]; + out[2] = in[2]; + out[3] = in[3]; + + for (int i = 4; i < 9; i++) { + psPolynomial2D *poly = psf->params->data[i-4]; + // XXX: Verify this (from EAM change) + //out[i] = Polynomial2DEval_EAM(poly, out[2], out[3]); + out[i] = psPolynomial2DEval(poly, out[2], out[3]); + } + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + psEllipseAxes axes; + psEllipseShape shape; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + shape.sx = 1.0 / PAR[4]; + shape.sy = 1.0 / PAR[5]; + shape.sxy = PAR[6]; + + axes = psEllipseShapeToAxes (shape); + + dP = 0; + dP += PS_SQR(dPAR[4] / PAR[4]); + dP += PS_SQR(dPAR[5] / PAR[5]); + dP += PS_SQR(dPAR[7] / PAR[7]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[1] > 0); + status &= ((dPAR[1]/PAR[1]) < 0.5); + status &= (fabs(PAR[8]) < 0.5); + status &= (dPAR[8] < 0.1); + status &= (axes.major > 1.41); + status &= (axes.minor > 1.41); + status &= ((axes.major / axes.minor) < 5.0); + status &= (PAR[7] > 0.5); + + if (status) + return true; + return false; +} + +// measure the flux for the elliptical contour +psF64 psImageEllipseContour (psEllipseAxes axes, double xc, double yc, psImage *image) +{ + + double t, dt, ct, st, xo, yo, value; + int N, Nt, x, y; + + // choose dt to uniformly divide contour, with ~1 pix spacing at most + dt = asin (1 / axes.minor); + Nt = (int)(2*M_PI / dt) + 1; + dt = 2*M_PI / Nt; + + ct = cos(axes.theta); + st = sin(axes.theta); + xo = xc - image->col0; + yo = yc - image->row0; + + psVector *contour = psVectorAlloc (Nt, PS_TYPE_F32); + contour->n = contour->nalloc; + for (t = 0, N = 0; (t < 2*M_PI) && (N < Nt); t += dt) { + x = ct*axes.major*cos(t) + st*axes.minor*sin(t) + xo; + y = ct*axes.minor*sin(t) + st*axes.major*cos(t) + yo; + value = p_psImageGetElementF64(image, x, y); + if (isfinite(value)) { + contour->data.F32[N] = value; + N++; + } + } + contour->n = N; + // accept every pixel: double counting is not so problematic here... + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEDIAN); + psVectorStats (stats, contour, NULL, NULL, 0); + value = stats->sampleMedian; + + psFree (stats); + psFree (contour); + + return (value); +} + +// XXX EAM : test version using flux contours to guess slope +bool PM_MODEL_GUESS_HARD (pmModel *model, pmSource *source) +{ + + pmMoments *sMoments = source->moments; + pmPeak *peak = source->peak; + psF32 *params = model->params->data.F32; + float f1, f2; + + psEllipseAxes axes; + psEllipseShape shape; + psEllipseMoments moments; + + moments.x2 = PS_SQR(sMoments->Sx); + moments.y2 = PS_SQR(sMoments->Sy); + moments.xy = sMoments->Sxy; + + // solve the math to go from Moments To Shape + axes = psEllipseMomentsToAxes(moments); + shape = psEllipseAxesToShape(axes); + + params[0] = sMoments->Sky; + params[1] = sMoments->Peak - sMoments->Sky; + params[2] = peak->x; + params[3] = peak->y; + params[4] = 1.0 / shape.sx; + params[5] = 1.0 / shape.sy; + params[6] = shape.sxy; + + f1 = psImageEllipseContour (axes, peak->x, peak->y, source->pixels); + axes.major *= 2.0; + axes.minor *= 2.0; + f2 = psImageEllipseContour (axes, peak->x, peak->y, source->pixels); + + if (f1 > f2) { + params[7] = PS_MIN (3.0, PS_MAX (0.5, log(2.0*(f1/f2) - 1.0) / log(2.0))); + } else { + params[7] = 0.5; + } + params[8] = 0.1; + + return(true); +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_TGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_TGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_TGAUSS.c (revision 12167) @@ -0,0 +1,202 @@ +/****************************************************************************** + * this file defines the TGAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fixed slope and fitted amplitude + 1 / (1 + z + kz^2.2) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) / SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) / SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - amplitude of high-order component (k) + *****************************************************************************/ + +/*** + XXXX the model in this file needs to be tested more carefully. + fix up the code to follow conventions in the other model function files. +***/ + +XXX broken code + +# define PM_MODEL_FUNC pmModelFunc_TGAUSS +# define PM_MODEL_FLUX pmModelFlux_TGAUSS +# define PM_MODEL_GUESS pmModelGuess_TGAUSS +# define PM_MODEL_LIMITS pmModelLimits_TGAUSS +# define PM_MODEL_RADIUS pmModelRadius_TGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_TGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_TGAUSS + +psF64 PS_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *x) +{ + psF32 *PAR = params->data.F32; + + psF32 X = x->data.F32[0] - PAR[2]; + psF32 Y = x->data.F32[1] - PAR[3]; + psF32 px = PAR[4]*X; + psF32 py = PAR[5]*Y; + psF32 z = 0.5*PS_SQR(px) + 0.5*PS_SQR(py) + PAR[6]*X*Y; + + psF32 p = pow(z, 1.2); + psF32 r = 1.0 / (1 + z + PAR[7]*z*p); + psF32 f = PAR[1]*r + PAR[0]; + + if (deriv != NULL) { + // note difference from a pure gaussian: q = params->data.F32[1]*r + psF32 t = PAR[1]*r*r; + psF32 q = t*(1 + PAR[7]*2.2*p); + + deriv->data.F32[0] = +1.0; + deriv->data.F32[1] = +r; + deriv->data.F32[2] = q*(2.0*px*PAR[4] + PAR[6]*Y); + deriv->data.F32[3] = q*(2.0*py*PAR[5] + PAR[6]*X); + deriv->data.F32[4] = -2.0*q*px*X; + deriv->data.F32[5] = -2.0*q*py*Y; + deriv->data.F32[6] = -q*X*Y; + deriv->data.F32[7] = -t*z*p; + } + return(f); +} + +bool PM_MODEL_LIMITS (psVector **beta_lim, psVector **params_min, psVector **params_max) +{ + + *beta_lim = psVectorAlloc (8, PS_TYPE_F32); + *params_min = psVectorAlloc (8, PS_TYPE_F32); + *params_max = psVectorAlloc (8, PS_TYPE_F32); + + beta_lim[0][0].data.F32[PM_PAR_SKY] = 1000; + beta_lim[0][0].data.F32[PM_PAR_I0] = 3e6; + beta_lim[0][0].data.F32[PM_PAR_XPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_YPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_SXX] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SYY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SXY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_7] = 0.5; + + params_min[0][0].data.F32[PM_PAR_SKY] = -1000; + params_min[0][0].data.F32[PM_PAR_I0] = 0; + params_min[0][0].data.F32[PM_PAR_XPOS] = -100; + params_min[0][0].data.F32[PM_PAR_YPOS] = -100; + params_min[0][0].data.F32[PM_PAR_SXX] = 0.5; + params_min[0][0].data.F32[PM_PAR_SYY] = 0.5; + params_min[0][0].data.F32[PM_PAR_SXY] = -5.0; + params_min[0][0].data.F32[PM_PAR_7] = 0.1; + + params_max[0][0].data.F32[PM_PAR_SKY] = 1e5; + params_max[0][0].data.F32[PM_PAR_I0] = 1e8; + params_max[0][0].data.F32[PM_PAR_XPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_YPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_SXX] = 100.0; + params_max[0][0].data.F32[PM_PAR_SYY] = 100.0; + params_max[0][0].data.F32[PM_PAR_SXY] = +5.0; + params_max[0][0].data.F32[PM_PAR_7] = 10.0; + + return (TRUE); +} + +bool PS_MODEL_GUESS (psModel *model, psSource *source) +{ + + psVector *params = model->params; + + params->data.F32[0] = source->moments->Sky; + params->data.F32[1] = source->peak->counts - source->moments->Sky; + params->data.F32[2] = source->moments->x; + params->data.F32[3] = source->moments->y; + params->data.F32[4] = 1.0/source->moments->Sx; + params->data.F32[5] = 1.0/source->moments->Sy; + // params->data.F32[6] = source->moments->Sxy; + params->data.F32[6] = 0.0; + params->data.F32[7] = 5.0; + return(true); +} + +psF64 PS_MODEL_FLUX (const psVector *params) +{ + psF64 A1 = 1 / PS_SQR(params->data.F32[4]); + psF64 A2 = 1 / PS_SQR(params->data.F32[5]); + psF64 A3 = params->data.F32[6]; + psF64 Area = 2.0 * M_PI / sqrt(A1*A2 - PS_SQR(A3)); + // Area is equivalent to 2 pi sigma^2 + + psF64 Flux = params->data.F32[1] * Area; + + return(Flux); +} + +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PS_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + if (flux <= 0) + return (1.0); + if (params->data.F32[1] <= 0) + return (1.0); + if (flux >= params->data.F32[1]) + return (1.0); + + psF64 sigma = sqrt(2.0) * hypot (1.0 / params->data.F32[4], 1.0 / params->data.F32[5]); + psF64 radius = sigma * sqrt (2.0 * log(params->data.F32[1] / flux)); + if (isnan(radius)) { + fprintf (stderr, "error in code\n"); + } + return (radius); +} + +bool PS_MODEL_FROM_PSF (psModel *modelPSF, psModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + out[0] = in[0]; + out[1] = in[1]; + out[2] = in[2]; + out[3] = in[3]; + + for (int i = 4; i < 8; i++) { + psPolynomial2D *poly = psf->params->data[i-4]; + out[i] = Polynomial2DEval (poly, out[2], out[3]); + } + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_WAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_WAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_WAUSS.c (revision 12167) @@ -0,0 +1,198 @@ +/****************************************************************************** + * this file defines the WAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fitted linear term + 1 / (1 + Az + Bz^2 + z^3/6) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (SigmaX / sqrt(2)) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (SigmaY / sqrt(2)) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - amplitude of the linear component (A) + * PM_PAR_8 8 - amplitude of the quadratic component (B) + *****************************************************************************/ + +/*** + XXXX the model in this file needs to be tested more carefully. + fix up the code to follow conventions in the other model function files. +***/ + +XXX broken code + +# define PM_MODEL_FUNC pmModelFunc_WAUSS +# define PM_MODEL_FLUX pmModelFlux_WAUSS +# define PM_MODEL_GUESS pmModelGuess_WAUSS +# define PM_MODEL_LIMITS pmModelLimits_WAUSS +# define PM_MODEL_RADIUS pmModelRadius_WAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_WAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_WAUSS + +psF64 PS_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *x) +{ + psF32 X = x->data.F32[0] - params->data.F32[2]; + psF32 Y = x->data.F32[1] - params->data.F32[2]; + psF32 px = params->data.F32[4]*X; + psF32 py = params->data.F32[5]*Y; + psF32 z = 0.5*PS_SQR(px) + 0.5*PS_SQR(py) + params->data.F32[6]*X*Y; + psF32 t = 0.5*z*z*(1.0 + params->data.F32[8]*z/3.0); + psF32 r = 1.0 / (1.0 + z + params->data.F32[7]*t); /* exp (-Z) */ + psF32 f = params->data.F32[1]*r + params->data.F32[0]; + + if (deriv != NULL) { + // note difference from gaussian: q = params->data.F32[1]*r + psF32 q = params->data.F32[1]*r*r*(1.0 + params->data.F32[7]*z*(1.0 + params->data.F32[8]*z/2.0)); + deriv->data.F32[0] = +1.0; + deriv->data.F32[1] = +r; + deriv->data.F32[2] = q*(2.0*px*params->data.F32[4] + params->data.F32[6]*Y); + deriv->data.F32[3] = q*(2.0*py*params->data.F32[5] + params->data.F32[6]*X); + deriv->data.F32[4] = -2.0*q*px*X; + deriv->data.F32[5] = -2.0*q*py*Y; + deriv->data.F32[6] = -q*X*Y; + deriv->data.F32[7] = -100.0*params->data.F32[1]*r*r*t; + deriv->data.F32[8] = -100.0*params->data.F32[1]*r*r*params->data.F32[7]*(z*z*z)/6.0; + // The values of 100 dampen the swing of params->data.F32[7,8] */ + } + return(f); +} + +bool PM_MODEL_LIMITS (psVector **beta_lim, psVector **params_min, psVector **params_max) +{ + + *beta_lim = psVectorAlloc (8, PS_TYPE_F32); + *params_min = psVectorAlloc (8, PS_TYPE_F32); + *params_max = psVectorAlloc (8, PS_TYPE_F32); + + beta_lim[0][0].data.F32[PM_PAR_SKY] = 1000; + beta_lim[0][0].data.F32[PM_PAR_I0] = 3e6; + beta_lim[0][0].data.F32[PM_PAR_XPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_YPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_SXX] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SYY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SXY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_7] = 0.5; + + params_min[0][0].data.F32[PM_PAR_SKY] = -1000; + params_min[0][0].data.F32[PM_PAR_I0] = 0; + params_min[0][0].data.F32[PM_PAR_XPOS] = -100; + params_min[0][0].data.F32[PM_PAR_YPOS] = -100; + params_min[0][0].data.F32[PM_PAR_SXX] = 0.5; + params_min[0][0].data.F32[PM_PAR_SYY] = 0.5; + params_min[0][0].data.F32[PM_PAR_SXY] = -5.0; + params_min[0][0].data.F32[PM_PAR_7] = 0.1; + + params_max[0][0].data.F32[PM_PAR_SKY] = 1e5; + params_max[0][0].data.F32[PM_PAR_I0] = 1e8; + params_max[0][0].data.F32[PM_PAR_XPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_YPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_SXX] = 100.0; + params_max[0][0].data.F32[PM_PAR_SYY] = 100.0; + params_max[0][0].data.F32[PM_PAR_SXY] = +5.0; + params_max[0][0].data.F32[PM_PAR_7] = 10.0; + + return (TRUE); +} + +bool PS_MODEL_GUESS (psModel *model, psSource *source) +{ + + psVector *params = model->params; + + params->data.F32[0] = source->moments->Sky; + params->data.F32[1] = source->peak->counts - source->moments->Sky; + params->data.F32[2] = source->moments->x; + params->data.F32[3] = source->moments->y; + params->data.F32[4] = sqrt(2.0) / source->moments->Sx; + params->data.F32[5] = sqrt(2.0) / source->moments->Sy; + params->data.F32[6] = source->moments->Sxy; + // XXX: What are these? + // params->data.F32[7] = B2; + // params->data.F32[8] = B3; + return(true); +} + +// this is probably wrong since it uses the gauss integral 2 pi sigma^2 +psF64 PS_MODEL_FLUX (const psVector *params) +{ + psF64 A1 = 1 / PS_SQR(params->data.F32[4]); + psF64 A2 = 1 / PS_SQR(params->data.F32[5]); + psF64 A3 = params->data.F32[6]; + psF64 Area = 2.0 * M_PI / sqrt(A1*A2 - PS_SQR(A3)); + // Area is equivalent to 2 pi sigma^2 + + psF64 Flux = params->data.F32[1] * Area; + + return(Flux); +} + +// return the radius which yields the requested flux +psF64 PS_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + if (flux <= 0) + return (1.0); + if (params->data.F32[1] <= 0) + return (1.0); + if (flux >= params->data.F32[1] <= 0) + return (1.0); + + psF64 sigma = sqrt(2.0) * hypot (1.0 / params->data.F32[4], 1.0 / params->data.F32[5]); + psF64 radius = sigma * sqrt (2.0 * log(params->data.F32[1] / flux)); + return (radius); +} + +bool PS_MODEL_FROM_PSF (psModel *modelPSF, psModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + out[0] = in[0]; + out[1] = in[1]; + out[2] = in[2]; + out[3] = in[3]; + + for (int i = 4; i < 9; i++) { + psPolynomial2D *poly = psf->params->data[i-4]; + out[i] = Polynomial2DEval (poly, out[2], out[3]); + } + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/models/pmModel_ZGAUSS.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/models/pmModel_ZGAUSS.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/models/pmModel_ZGAUSS.c (revision 12167) @@ -0,0 +1,251 @@ +/****************************************************************************** + * this file defines the ZGAUSS source shape model (XXX need a better name!). Note that these + * model functions are loaded by pmModelGroup.c using 'include', and thus need no 'include' + * statements of their own. The models use a psVector to represent the set of parameters, with + * the sequence used to specify the meaning of the parameter. The meaning of the parameters + * may thus vary depending on the specifics of the model. All models which are used a PSF + * representations share a few parameters, for which # define names are listed in pmModel.h: + + power-law with fitted slope and tidal cutoff + 1 / (1 + z^N + (Az)^4) + + * PM_PAR_SKY 0 - local sky : note that this is unused and may be dropped in the future + * PM_PAR_I0 1 - central intensity + * PM_PAR_XPOS 2 - X center of object + * PM_PAR_YPOS 3 - Y center of object + * PM_PAR_SXX 4 - X^2 term of elliptical contour (sqrt(2) / SigmaX) + * PM_PAR_SYY 5 - Y^2 term of elliptical contour (sqrt(2) / SigmaY) + * PM_PAR_SXY 6 - X*Y term of elliptical contour + * PM_PAR_7 7 - slope of power-law component (N) + *****************************************************************************/ + +/*** + XXXX the model in this file needs to be tested more carefully. + fix up the code to follow conventions in the other model function files. +***/ + +XXX broken code + +# define PM_MODEL_FUNC pmModelFunc_ZGAUSS +# define PM_MODEL_FLUX pmModelFlux_ZGAUSS +# define PM_MODEL_GUESS pmModelGuess_ZGAUSS +# define PM_MODEL_LIMITS pmModelLimits_ZGAUSS +# define PM_MODEL_RADIUS pmModelRadius_ZGAUSS +# define PM_MODEL_FROM_PSF pmModelFromPSF_ZGAUSS +# define PM_MODEL_FIT_STATUS pmModelFitStatus_ZGAUSS + +# define PAR8 0.1 + +psF64 PS_MODEL_FUNC (psVector *deriv, + const psVector *params, + const psVector *x) +{ + psF32 *PAR = params->data.F32; + + psF32 X = x->data.F32[0] - PAR[2]; + psF32 Y = x->data.F32[1] - PAR[3]; + psF32 px = PAR[4]*X; + psF32 py = PAR[5]*Y; + psF32 z = 0.5*PS_SQR(px) + 0.5*PS_SQR(py) + PAR[6]*X*Y; + + psF32 pr = PAR8*z; + psF32 p = pow(z, PAR[7] - 1.0); + psF32 r = 1.0 / (1 + z*p + SQ(SQ(pr))); + psF32 f = PAR[1]*r + PAR[0]; + + if (deriv != NULL) { + // note difference from a pure gaussian: q = params->data.F32[1]*r + psF32 t = PAR[1]*r*r; + psF32 q = t*(PAR[7]*p + 4*PAR8*pr*pr*pr); + + deriv->data.F32[0] = +1.0; + deriv->data.F32[1] = +r; + deriv->data.F32[2] = q*(2.0*px*PAR[4] + PAR[6]*Y); + deriv->data.F32[3] = q*(2.0*py*PAR[5] + PAR[6]*X); + deriv->data.F32[4] = -q*px*X; + deriv->data.F32[5] = -q*py*Y; + deriv->data.F32[6] = -q*X*Y; + deriv->data.F32[7] = -t*log(z)*z*p; + } + return(f); +} + +bool PM_MODEL_LIMITS (psVector **beta_lim, psVector **params_min, psVector **params_max) +{ + + *beta_lim = psVectorAlloc (8, PS_TYPE_F32); + *params_min = psVectorAlloc (8, PS_TYPE_F32); + *params_max = psVectorAlloc (8, PS_TYPE_F32); + + beta_lim[0][0].data.F32[PM_PAR_SKY] = 1000; + beta_lim[0][0].data.F32[PM_PAR_I0] = 3e6; + beta_lim[0][0].data.F32[PM_PAR_XPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_YPOS] = 5; + beta_lim[0][0].data.F32[PM_PAR_SXX] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SYY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_SXY] = 0.5; + beta_lim[0][0].data.F32[PM_PAR_7] = 0.5; + + params_min[0][0].data.F32[PM_PAR_SKY] = -1000; + params_min[0][0].data.F32[PM_PAR_I0] = 0; + params_min[0][0].data.F32[PM_PAR_XPOS] = -100; + params_min[0][0].data.F32[PM_PAR_YPOS] = -100; + params_min[0][0].data.F32[PM_PAR_SXX] = 0.5; + params_min[0][0].data.F32[PM_PAR_SYY] = 0.5; + params_min[0][0].data.F32[PM_PAR_SXY] = -5.0; + params_min[0][0].data.F32[PM_PAR_7] = 0.1; + + params_max[0][0].data.F32[PM_PAR_SKY] = 1e5; + params_max[0][0].data.F32[PM_PAR_I0] = 1e8; + params_max[0][0].data.F32[PM_PAR_XPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_YPOS] = 1e4; // this should be set by image dimensions! + params_max[0][0].data.F32[PM_PAR_SXX] = 100.0; + params_max[0][0].data.F32[PM_PAR_SYY] = 100.0; + params_max[0][0].data.F32[PM_PAR_SXY] = +5.0; + params_max[0][0].data.F32[PM_PAR_7] = 10.0; + + return (TRUE); +} + +bool PS_MODEL_GUESS (psModel *model, psSource *source) +{ + + psVector *params = model->params; + + psEllipseAxes axes; + psEllipseShape shape; + psEllipseMoments moments; + + moments.x2 = PS_SQR(source->moments->Sx); + moments.y2 = PS_SQR(source->moments->Sy); + moments.xy = source->moments->Sxy; + + axes = psEllipseMomentsToAxes(moments); + shape = psEllipseAxesToShape(axes); + + params->data.F32[0] = source->moments->Sky; + params->data.F32[1] = source->peak->counts - source->moments->Sky; + params->data.F32[2] = source->moments->x; + params->data.F32[3] = source->moments->y; + params->data.F32[4] = 1.0 / shape.sx; + params->data.F32[5] = 1.0 / shape.sy; + params->data.F32[6] = shape.sxy; + params->data.F32[7] = 1.9; + return(true); +} + +psF64 PS_MODEL_FLUX (const psVector *params) +{ + float f, norm, z; + + psF32 *PAR = params->data.F32; + + psF64 A1 = PS_SQR(PAR[4]); + psF64 A2 = PS_SQR(PAR[5]); + psF64 A3 = PS_SQR(PAR[6]); + psF64 Area = 2.0 * M_PI / sqrt(A1*A2 - A3); + // Area is equivalent to 2 pi sigma^2 + + // the area needs to be multiplied by the integral of f(z) + norm = 0.0; + psF32 pr = PAR8*z; + for (z = 0.005; z < 50; z += 0.01) { + f = 1.0 / (1 + pow(z, PAR[7]) + SQ(SQ(pr))); + norm += f; + } + norm *= 0.01; + + psF64 Flux = PAR[1] * Area * norm; + + return(Flux); +} + +// XXX need to define the radius along the major axis +// define this function so it never returns Inf or NaN +// return the radius which yields the requested flux +psF64 PS_MODEL_RADIUS (const psVector *params, psF64 flux) +{ + psF64 r, z, pr, f; + psF32 *PAR = params->data.F32; + + psEllipseAxes axes; + psEllipseShape shape; + + if (flux <= 0) + return (1.0); + if (PAR[1] <= 0) + return (1.0); + if (flux >= PAR[1]) + return (1.0); + + // convert Sx,Sy,Sxy to major/minor axes + shape.sx = 1.0 / PAR[4]; + shape.sy = 1.0 / PAR[5]; + shape.sxy = PAR[6]; + + axes = psEllipseShapeToAxes (shape); + psF64 dr = 1.0 / axes.major; + psF64 limit = flux / PAR[1]; + + // XXX : we can do this faster with an intelligent starting choice + for (r = 0.0; r < 20.0; r += dr) { + z = SQ(r); + pr = PAR8*z; + f = 1.0 / (1 + pow(z, PAR[7]) + SQ(SQ(pr))); + if (f < limit) + break; + } + psF64 radius = 2.0 * axes.major * sqrt (z); + if (isnan(radius)) { + fprintf (stderr, "error in code\n"); + } + return (radius); +} + +bool PS_MODEL_FROM_PSF (psModel *modelPSF, psModel *modelFLT, pmPSF *psf) +{ + + psF32 *out = modelPSF->params->data.F32; + psF32 *in = modelFLT->params->data.F32; + + out[0] = in[0]; + out[1] = in[1]; + out[2] = in[2]; + out[3] = in[3]; + + for (int i = 4; i < 8; i++) { + psPolynomial2D *poly = psf->params->data[i-4]; + out[i] = Polynomial2DEval (poly, out[2], out[3]); + } + return(true); +} + +bool PM_MODEL_FIT_STATUS (pmModel *model) +{ + + psF32 dP; + bool status; + + psF32 *PAR = model->params->data.F32; + psF32 *dPAR = model->dparams->data.F32; + + dP = 0; + dP += PS_SQR(dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]); + dP += PS_SQR(dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY]); + dP = sqrt (dP); + + status = true; + status &= (dP < 0.5); + status &= (PAR[PM_PAR_I0] > 0); + status &= ((dPAR[PM_PAR_I0]/PAR[PM_PAR_I0]) < 0.5); + + return status; +} + +# undef PM_MODEL_FUNC +# undef PM_MODEL_FLUX +# undef PM_MODEL_GUESS +# undef PM_MODEL_LIMITS +# undef PM_MODEL_RADIUS +# undef PM_MODEL_FROM_PSF +# undef PM_MODEL_FIT_STATUS Index: /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.c (revision 12167) @@ -0,0 +1,63 @@ +/** @file pmGrowthCurve.c + * + * Measure the curve-of-growth for sources + * + * @author EAM, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-11-07 22:55:40 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include "pmFPA.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmGrowthCurve.h" +#include "pmPSF.h" +#include "psVectorBracket.h" + +static void pmGrowthCurveFree (pmGrowthCurve *growth) +{ + + if (growth == NULL) + return; + + psFree (growth->radius); + psFree (growth->apMag); + return; +} + +pmGrowthCurve *pmGrowthCurveAlloc (psF32 minRadius, psF32 maxRadius, psF32 refRadius) +{ + + pmGrowthCurve *growth = psAlloc (sizeof(pmGrowthCurve)); + psMemSetDeallocator(growth, (psFreeFunc) pmGrowthCurveFree); + + // fractional pixel radii are not well defined; use integer steps + growth->radius = psVectorCreate (NULL, minRadius, maxRadius, 1.0, PS_TYPE_F32); + growth->apMag = psVectorAlloc (growth->radius->n, PS_TYPE_F32); + + // XXX may want to extend this to allow for a different refRadius; + growth->refRadius = refRadius; + growth->maxRadius = maxRadius; + growth->apLoss = 0.0; + growth->fitMag = 0.0; + return growth; +} + +psF32 pmGrowthCurveCorrect (pmGrowthCurve *growth, psF32 radius) +{ + + float apRad = psVectorInterpolate (growth->radius, growth->apMag, radius); + float apCor = growth->apRef - apRad; + return apCor; +} Index: /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmGrowthCurve.h (revision 12167) @@ -0,0 +1,33 @@ +/* @file pmGrowthCurve.h + * @brief functions to manipulate the curve-of-growth data + * + * @author EAM, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +# ifndef PM_GROWTH_CURVE_H +# define PM_GROWTH_CURVE_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +typedef struct +{ + psVector *radius; + psVector *apMag; + psF32 refRadius; + psF32 maxRadius; + psF32 fitMag; + psF32 apRef; // apMag[refRadius] + psF32 apLoss; // fitMag - apRef +} +pmGrowthCurve; + +pmGrowthCurve *pmGrowthCurveAlloc (psF32 minRadius, psF32 maxRadius, psF32 refRadius); +psF32 pmGrowthCurveCorrect (pmGrowthCurve *growth, psF32 radius); + +/// @} +# endif /* PM_GROWTH_CURVE_H */ Index: /branches/rel-1-1/psModules/src/objects/pmModel.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmModel.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmModel.c (revision 12167) @@ -0,0 +1,230 @@ +/** @file pmModel.c + * + * Functions to define and manipulate object models + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.9 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-10-31 19:38:44 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmModel.h" + +/* The following types and functions need to be known by pmModel.c and are defined in + pmModelGroup.h. The use of pmSource and other types in pmModelGroup.h prevent us from + directly including it here ***/ + +typedef psMinimizeLMChi2Func pmModelFunc; +typedef bool (*pmModelFitStatusFunc)(pmModel *model); +pmModelFunc pmModelFunc_GetFunction (pmModelType type); +pmModelFitStatusFunc pmModelFitStatusFunc_GetFunction (pmModelType type); +int pmModelParameterCount(pmModelType type); + +static void modelFree(pmModel *tmp) +{ + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + psFree(tmp->params); + psFree(tmp->dparams); + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); +} + +/****************************************************************************** +pmModelAlloc(): Allocate the pmModel structure, along with its parameters, +and initialize the type member. Initialize the params to 0.0. +XXX EAM: simplifying code with pmModelParameterCount +*****************************************************************************/ +pmModel *pmModelAlloc(pmModelType type) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + pmModel *tmp = (pmModel *) psAlloc(sizeof(pmModel)); + + tmp->type = type; + tmp->chisq = 0.0; + tmp->nDOF = 0; + tmp->nIter = 0; + tmp->radiusFit = 0; + tmp->status = PM_MODEL_UNTRIED; + + psS32 Nparams = pmModelParameterCount(type); + if (Nparams == 0) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return(NULL); + } + + tmp->params = psVectorAlloc(Nparams, PS_TYPE_F32); + tmp->dparams = psVectorAlloc(Nparams, PS_TYPE_F32); + + for (psS32 i = 0; i < tmp->params->n; i++) { + tmp->params->data.F32[i] = 0.0; + tmp->dparams->data.F32[i] = 0.0; + } + + psMemSetDeallocator(tmp, (psFreeFunc) modelFree); + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmp); +} + +// copy model to a new structure +pmModel *pmModelCopy (pmModel *model) +{ + + pmModel *new = pmModelAlloc (model->type); + + new->chisq = model->chisq; + new->nDOF = model->nDOF; + new->nIter = model->nIter; + new->status = model->status; + new->radiusFit = model->radiusFit; + + for (int i = 0; i < new->params->n; i++) { + new->params->data.F32[i] = model->params->data.F32[i]; + new->dparams->data.F32[i] = model->dparams->data.F32[i]; + } + + return (new); +} + +/****************************************************************************** + pmModelEval(source, level, row): evaluates the model function at the specified coords. + + NOTE: The coords are in subImage source->pixel coords, not image coords. + + XXX: Use static vectors for x (NO: needs to be thread safe) +*****************************************************************************/ +psF32 pmModelEval(pmModel *model, psImage *image, psS32 col, psS32 row) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(image, false); + PS_ASSERT_PTR_NON_NULL(model, false); + PS_ASSERT_PTR_NON_NULL(model->params, false); + + // Allocate the x coordinate structure and convert row/col to image space. + // + psVector *x = psVectorAlloc(2, PS_TYPE_F32); + x->data.F32[0] = (psF32) (col + image->col0); + x->data.F32[1] = (psF32) (row + image->row0); + psF32 tmpF; + pmModelFunc modelFunc; + + modelFunc = pmModelFunc_GetFunction (model->type); + tmpF = modelFunc (NULL, model->params, x); + psFree(x); + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmpF); +} + +bool AddOrSubModel(psImage *image, + psImage *mask, + pmModel *model, + bool center, + bool sky, + bool add + ) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + + PS_ASSERT_PTR_NON_NULL(model, false); + PS_ASSERT_IMAGE_NON_NULL(image, false); + PS_ASSERT_IMAGE_TYPE(image, PS_TYPE_F32, false); + + psVector *x = psVectorAlloc(2, PS_TYPE_F32); + psVector *params = model->params; + pmModelFunc modelFunc = pmModelFunc_GetFunction (model->type); + psS32 imageCol; + psS32 imageRow; + psF32 skyValue = params->data.F32[0]; + psF32 pixelValue; + + for (psS32 i = 0; i < image->numRows; i++) { + for (psS32 j = 0; j < image->numCols; j++) { + if ((mask != NULL) && mask->data.U8[i][j]) + continue; + + // Convert i/j to image coord space: + // 'center' option changes meaning of i,j: + if (center) { + imageCol = j - 0.5*image->numCols + model->params->data.F32[2]; + imageRow = i - 0.5*image->numRows + model->params->data.F32[3]; + } else { + imageCol = j + image->col0; + imageRow = i + image->row0; + } + + x->data.F32[0] = (float) imageCol; + x->data.F32[1] = (float) imageRow; + + // set the appropriate pixel value for this coordinate + if (sky) { + pixelValue = modelFunc (NULL, params, x); + } else { + pixelValue = modelFunc (NULL, params, x) - skyValue; + } + + + // add or subtract the value + if (add + ) { + image->data.F32[i][j] += pixelValue; + } + else { + image->data.F32[i][j] -= pixelValue; + } + } + } + psFree(x); + psTrace("psModules.objects", 3, "---- %s(true) end ----\n", __func__); + return(true); +} + +/****************************************************************************** + *****************************************************************************/ +bool pmModelAdd(psImage *image, + psImage *mask, + pmModel *model, + bool center, + bool sky) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + psBool rc = AddOrSubModel(image, mask, model, center, sky, true); + psTrace("psModules.objects", 3, "---- %s(%d) end ----\n", __func__, rc); + return(rc); +} + +/****************************************************************************** + *****************************************************************************/ +bool pmModelSub(psImage *image, + psImage *mask, + pmModel *model, + bool center, + bool sky) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + psBool rc = AddOrSubModel(image, mask, model, center, sky, false); + psTrace("psModules.objects", 3, "---- %s(%d) end ----\n", __func__, rc); + return(rc); +} + +// check for success of model fit +bool pmModelFitStatus (pmModel *model) +{ + + bool status; + + pmModelFitStatusFunc statusFunc = pmModelFitStatusFunc_GetFunction (model->type); + status = statusFunc (model); + + return (status); +} + Index: /branches/rel-1-1/psModules/src/objects/pmModel.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmModel.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmModel.h (revision 12167) @@ -0,0 +1,128 @@ +/* @file pmObjects.h + * @brief Functions to define and manipulate object models + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_MODEL_H +# define PM_MODEL_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +// type of model carried by the pmModel structure +typedef int pmModelType; + +typedef enum { + PM_MODEL_UNTRIED, ///< model fit not yet attempted + PM_MODEL_SUCCESS, ///< model fit succeeded + PM_MODEL_NONCONVERGE, ///< model fit did not converge + PM_MODEL_OFFIMAGE, ///< model fit drove out of range + PM_MODEL_BADARGS ///< model fit called with invalid args +} pmModelStatus; + +/** pmModel data structure + * + * Every source may have two types of models: a PSF model and a EXT (extended-source) + * model. The PSF model represents the best fit of the image PSF to the specific + * object. In this case, the PSF-dependent parameters are specified for the + * object by the PSF, not by the fit. The EXT model represents the best fit of + * the given model to the object, with all shape parameters floating in the fit. + * + */ +typedef struct +{ + pmModelType type; ///< Model to be used. + psVector *params; ///< Paramater values. + psVector *dparams; ///< Parameter errors. + float chisq; ///< Fit chi-squared. + float chisqNorm; ///< re-normalized fit chi-squared. + int nDOF; ///< number of degrees of freedom + int nIter; ///< number of iterations to reach min + pmModelStatus status; ///< fit status + float radiusFit; ///< fit radius actually used +} +pmModel; + +/** Symbolic names for the elements of [d]params + * Note: these are #defines not enums as a given element of [d]params + * may/will correspond to different parameters in different contexts + */ +#define PM_PAR_SKY 0 ///< Sky +#define PM_PAR_I0 1 ///< Central intensity +#define PM_PAR_XPOS 2 ///< X centre of object +#define PM_PAR_YPOS 3 ///< Y centre of object +#define PM_PAR_SXX 4 ///< shape X^2 moment +#define PM_PAR_SYY 5 ///< shape Y^2 moment +#define PM_PAR_SXY 6 ///< shape XY moment +#define PM_PAR_7 7 ///< ??? Unknown parameter +#define PM_PAR_8 8 ///< ??? Unknown parameter + +/** pmModelAlloc() + * + */ +pmModel *pmModelAlloc(pmModelType type); + +// copy model to a new structure +pmModel *pmModelCopy (pmModel *model); + +psF32 pmModelEval(pmModel *model, psImage *image, psS32 col, psS32 row); + +/** pmModelAdd() + * + * Add the given source model flux to/from the provided image. The boolean + * option center selects if the source is re-centered to the image center or if + * it is placed at its centroid location. The boolean option sky selects if the + * background sky is applied (TRUE) or not. The pixel range in the target image + * is at most the pixel range specified by the source.pixels image. The success + * status is returned. + * + */ +bool pmModelAdd( + psImage *image, ///< The output image (float) + psImage *mask, ///< The image pixel mask (valid == 0) + pmModel *model, ///< The input pmModel + bool center, ///< A boolean flag that determines whether pixels are centered + bool sky ///< A boolean flag that determines if the sky is subtracted +); + + +/** pmModelSub() + * + * Subtract the given source model flux to/from the provided image. The + * boolean option center selects if the source is re-centered to the image center + * or if it is placed at its centroid location. The boolean option sky selects if + * the background sky is applied (TRUE) or not. The pixel range in the target + * image is at most the pixel range specified by the source.pixels image. The + * success status is returned. + * + */ +bool pmModelSub( + psImage *image, ///< The output image (float) + psImage *mask, ///< The image pixel mask (valid == 0) + pmModel *model, ///< The input pmModel + bool center, ///< A boolean flag that determines whether pixels are centered + bool sky ///< A boolean flag that determines if the sky is subtracted +); + +/** pmModelFitStatus() + * + * This function wraps the call to the model-specific function returned by + * pmModelFitStatusFunc_GetFunction. The model-specific function examines the + * model parameters, parameter errors, Chisq, S/N, and other parameters available + * from model to decide if the particular fit was successful or not. + * + * XXX: Must code this. + * + */ +bool pmModelFitStatus( + pmModel *model ///< Model to be used +); + +/// @} +# endif /* PM_MODEL_H */ Index: /branches/rel-1-1/psModules/src/objects/pmModelGroup.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmModelGroup.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmModelGroup.c (revision 12167) @@ -0,0 +1,219 @@ +/** @file pmModelGroup.c + * + * Functions to define and manipulate object model attributes + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.12 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-11-29 02:35:45 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" + +// XXX shouldn't these be defined for us in pslib.h ??? +double hypot(double x, double y); +double sqrt (double x); + +# include "models/pmModel_GAUSS.c" +# include "models/pmModel_PGAUSS.c" +# include "models/pmModel_QGAUSS.c" + +static pmModelGroup defaultModels[] = { + {"PS_MODEL_GAUSS", 7, pmModelFunc_GAUSS, pmModelFlux_GAUSS, pmModelRadius_GAUSS, pmModelLimits_GAUSS, pmModelGuess_GAUSS, pmModelFromPSF_GAUSS, pmModelFitStatus_GAUSS}, + {"PS_MODEL_PGAUSS", 7, pmModelFunc_PGAUSS, pmModelFlux_PGAUSS, pmModelRadius_PGAUSS, pmModelLimits_PGAUSS, pmModelGuess_PGAUSS, pmModelFromPSF_PGAUSS, pmModelFitStatus_PGAUSS}, + {"PS_MODEL_QGAUSS", 8, pmModelFunc_QGAUSS, pmModelFlux_QGAUSS, pmModelRadius_QGAUSS, pmModelLimits_QGAUSS, pmModelGuess_QGAUSS, pmModelFromPSF_QGAUSS, pmModelFitStatus_QGAUSS}, + }; + +static pmModelGroup *models = NULL; +static int Nmodels = 0; + +static void ModelGroupFree (pmModelGroup *modelGroup) +{ + + if (modelGroup == NULL) + return; + return; +} + +pmModelGroup *pmModelGroupAlloc (int nModels) +{ + + pmModelGroup *modelGroup = (pmModelGroup *) psAlloc (nModels * sizeof(pmModelGroup)); + psMemSetDeallocator(modelGroup, (psFreeFunc) ModelGroupFree); + return (modelGroup); +} + +void pmModelGroupAdd (pmModelGroup *model) +{ + + if (models == NULL) { + pmModelGroupInit (); + } + + Nmodels ++; + models = (pmModelGroup *) psRealloc (models, Nmodels*sizeof(pmModelGroup)); + models[Nmodels-1] = model[0]; + return; +} + +bool pmModelGroupInit (void) +{ + + // if we do not need to init, return false; + if (models != NULL) + return false; + + int Nnew = sizeof (defaultModels) / sizeof (pmModelGroup); + + models = pmModelGroupAlloc (Nnew); + for (int i = 0; i < Nnew; i++) { + models[i] = defaultModels[i]; + } + Nmodels = Nnew; + return true; +} + +void pmModelGroupCleanup (void) +{ + psFree (models); + models = NULL; + return; +} + +pmModelFunc pmModelFunc_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelFunc); +} + +pmModelFlux pmModelFlux_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelFlux); +} + +pmModelRadius pmModelRadius_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelRadius); +} + +pmModelLimits pmModelLimits_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelLimits); +} + +pmModelGuessFunc pmModelGuessFunc_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelGuessFunc); +} + +pmModelFitStatusFunc pmModelFitStatusFunc_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelFitStatusFunc); +} + +pmModelFromPSFFunc pmModelFromPSFFunc_GetFunction (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].modelFromPSFFunc); +} + +psS32 pmModelParameterCount (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (0); + } + return (models[type].nParams); +} + +psS32 pmModelSetType (char *name) +{ + for (int i = 0; i < Nmodels; i++) { + if (!strcmp(models[i].name, name)) { + return (i); + } + } + return (-1); +} + +char *pmModelGetType (pmModelType type) +{ + if ((type < 0) || (type >= Nmodels)) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return (NULL); + } + return (models[type].name); +} + +/****************************************************************************** + pmSourceModelGuess(source, model): This function allocates a new + pmModel structure based on the given modelType specified in the argument list. + The corresponding pmModelGuess function is returned, and used to + supply the values of the params array in the pmModel structure. + + XXX: Many parameters are based on the src->moments structure, which is in + image, not subImage coords. Therefore, the calls to the model evaluation + functions will be in image, not subImage coords. Remember this. +*****************************************************************************/ +pmModel *pmSourceModelGuess(pmSource *source, + pmModelType modelType) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, NULL); + PS_ASSERT_PTR_NON_NULL(source->moments, NULL); + PS_ASSERT_PTR_NON_NULL(source->peak, NULL); + + pmModel *model = pmModelAlloc(modelType); + + pmModelGuessFunc modelGuessFunc = pmModelGuessFunc_GetFunction(modelType); + modelGuessFunc(model, source); + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(model); +} + Index: /branches/rel-1-1/psModules/src/objects/pmModelGroup.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmModelGroup.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmModelGroup.h (revision 12167) @@ -0,0 +1,204 @@ +/* @file pmModelGroup.h + * + * The object model function types are defined to allow for the flexible addition + * of new object models. Every object model, with parameters represented by + * pmModel, has an associated set of functions which provide necessary support + * operations. A set of abstract functions allow the programmer to select the + * approriate function or property for a specific named object model. + * + * @author EAM, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_MODEL_GROUP_H +# define PM_MODEL_GROUP_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +// This function is the model chi-square minimization function for this model. +typedef psMinimizeLMChi2Func pmModelFunc; + +// This function is the model chi-square minimization function for this model. +typedef psMinimizeLMLimitFunc pmModelLimits; + +// This function returns the integrated flux for the given model parameters. +typedef psF64 (*pmModelFlux)(const psVector *params); + + +// This function returns the radius at which the given model and parameters +// achieves the given flux. +typedef psF64 (*pmModelRadius)(const psVector *params, double flux); + +/* This function sets the model parameter limits vectors for the given model + */ +// typedef bool (*pmModelLimits)(psVector **beta_lim, psVector **params_min, psVector **params_max); + +/* This function provides the model guess parameters based on the details of + * the given source. + */ +typedef bool (*pmModelGuessFunc)(pmModel *model, pmSource *source); + + +/* This function constructs the PSF model for the given source based on the + * supplied psf and the EXT model for the object. + */ +typedef bool (*pmModelFromPSFFunc)(pmModel *modelPSF, pmModel *modelEXT, pmPSF *psf); + +/* This function returns the success / failure status of the given model fit + */ +typedef bool (*pmModelFitStatusFunc)(pmModel *model); + +/* Every model instance belongs to a class of models, defined by the value of + * the pmModelType type entry. Various functions need access to information about + * each of the models. Some of this information varies from model to model, and + * may depend on the current parameter values or other data quantities. In order + * to keep the code from requiring the information about each model to be coded + * into the low-level fitting routines, we define a collection of functions which + * allow us to abstract this type of model-dependent information. These generic + * functions take the model type and return the corresponding function pointer + * for the specified model. Each model is defined by creating this collection of + * specific functions, and placing them in a single file for each model. We + * define the following structure to carry the collection of information about + * the models. + */ +typedef struct +{ + char *name; + int nParams; + pmModelFunc modelFunc; + pmModelFlux modelFlux; + pmModelRadius modelRadius; + pmModelLimits modelLimits; + pmModelGuessFunc modelGuessFunc; + pmModelFromPSFFunc modelFromPSFFunc; + pmModelFitStatusFunc modelFitStatusFunc; +} +pmModelGroup; + +// allocate a pmModelGroup to hold nModels entries +pmModelGroup *pmModelGroupAlloc (int nModels); + +// initialize the internal (static) model group with the default models +bool pmModelGroupInit (void); + +// free the internal (static) model group +void pmModelGroupCleanup (void); + +// add a new model to the internal (static) model group +void pmModelGroupAdd (pmModelGroup *model); + +/* This function returns the number of parameters used by the listed function. + */ +int pmModelParameterCount( + pmModelType type ///< Add comment. +); + + +/* This function returns the user-space model names for the specified model type. + */ +char *pmModelGetType( + pmModelType type ///< Add comment. +); + + +/** + * + * This function returns the internal model type code for the user-space model names. + * + */ +pmModelType pmModelSetType( + char *name ///< Add comment. +); + +/** + * + * Each of the function types above has a corresponding function which returns + * the function given the model type: + * + */ + +/** + * + * pmModelFunc is the function used to determine the value of the model at a + * specific coordinate, and is the one used by psMinimizeLMChi2. + * + */ +pmModelFunc pmModelFunc_GetFunction (pmModelType type); + + +/** + * + * pmModelFlux returns the total integrated flux for the given input parameters. + * + */ +pmModelFlux pmModelFlux_GetFunction (pmModelType type); + + +/** + * + * pmModelRadius returns the scaling radius at which the flux of the model + * matches the specified flux. This presumes that the model is a function of an + * elliptical contour. + * + */ +pmModelRadius pmModelRadius_GetFunction (pmModelType type); + + +/** + * + * pmModelLimits sets the parameter limit vectors for the function. + * + */ +pmModelLimits pmModelLimits_GetFunction (pmModelType type); + + +/** + * + * pmModelGuessFunc generates an initial guess for the model based on the + * provided source statistics (moments and pixel values as needed). + * + */ +pmModelGuessFunc pmModelGuessFunc_GetFunction (pmModelType type); + + +/** + * + * pmModelFromPSFFunc takes as input a representation of the psf and a value + * for the model and fills in the PSF parameters of the model. The input + * primarily relies upon the centroid coordinates of the input model, though the + * normalization may potentially be used. + * + */ +pmModelFromPSFFunc pmModelFromPSFFunc_GetFunction (pmModelType type); + + +/** + * + * pmModelFitStatusFunc returns a true or false values based on the success or + * failure of a model fit. The success is determined by quantities such as the + * chisq or the signal-to-noise. + * + */ +pmModelFitStatusFunc pmModelFitStatusFunc_GetFunction (pmModelType type); + + +/** pmSourceModelGuess() + * + * Convert available data to an initial guess for the given model. This + * function allocates a pmModel entry for the pmSource structure based on the + * provided model selection. The method of defining the model parameter guesses + * are specified for each model below. The guess values are placed in the model + * parameters. The function returns TRUE on success or FALSE on failure. + * + */ +pmModel *pmSourceModelGuess( + pmSource *source, ///< The input pmSource + pmModelType model ///< The type of model to be created. +); + +/// @} +# endif /* PM_MODEL_GROUP_H */ Index: /branches/rel-1-1/psModules/src/objects/pmMoments.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmMoments.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmMoments.c (revision 12167) @@ -0,0 +1,44 @@ +/** @file pmMoments.c + * + * Functions defining the pmMoments structure + * + * @author GLG, MHPCC + * @author EAM, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-09-15 09:49:01 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include "pmMoments.h" + +/****************************************************************************** +pmMomentsAlloc(): Allocate the pmMoments structure and initialize the members +to zero. +*****************************************************************************/ +pmMoments *pmMomentsAlloc() +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + pmMoments *tmp = (pmMoments *) psAlloc(sizeof(pmMoments)); + tmp->x = 0.0; + tmp->y = 0.0; + tmp->Sx = 0.0; + tmp->Sy = 0.0; + tmp->Sxy = 0.0; + tmp->Sum = 0.0; + tmp->Peak = 0.0; + tmp->Sky = 0.0; + tmp->nPixels = 0; + + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmp); +} + Index: /branches/rel-1-1/psModules/src/objects/pmMoments.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmMoments.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmMoments.h (revision 12167) @@ -0,0 +1,46 @@ +/* @file pmMoments.h + * @brief Definitions of the moments structure + * + * @author GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_MOMENTS_H +# define PM_MOMENTS_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** pmMoments data structure + * + * One of the simplest measurements which can be made quickly for an object + * are the object moments. We specify a structure to carry the moment information + * for a specific source: + * + */ +typedef struct +{ + float x; ///< X-coord of centroid. + float y; ///< Y-coord of centroid. + float Sx; ///< x-second moment. + float Sy; ///< y-second moment. + float Sxy; ///< xy cross moment. + float Sum; ///< Pixel sum above sky (background). + float Peak; ///< Peak counts above sky. + float Sky; ///< Sky level (background). + float dSky; ///< local Sky variance + float SN; ///< approx signal-to-noise + int nPixels; ///< Number of pixels used. +} +pmMoments; + +/** pmMomentsAlloc() + * + */ +pmMoments *pmMomentsAlloc(); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/objects/pmObjects.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmObjects.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmObjects.c (revision 12167) @@ -0,0 +1,25 @@ +/** @file pmObjects.c + * + * This file will ... + * + * @author GLG, MHPCC + * @author EAM, IfA: significant modifications. + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-09-15 09:49:01 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmObjects.h" +#include "pmModelGroup.h" + Index: /branches/rel-1-1/psModules/src/objects/pmObjects.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmObjects.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmObjects.h (revision 12167) @@ -0,0 +1,68 @@ +/* @file pmObjects.h + * + * The process of finding, measuring, and classifying astronomical sources on + * images is one of the critical tasks of the IPP or any astronomical software + * system. This file will define structures and functions related to the task + * of source detection and measurement. The elements defined in this section + * are generally low-level components which can be connected together to + * construct a complete object measurement suite. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#ifndef PM_OBJECTS_H +#define PM_OBJECTS_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +#include +#include +#include + +/** + * + * This function converts the source classification into the closest available + * approximation to the Dophot classification scheme: + * XXX EAM : fix this to use current source classification scheme + * + * PM_SOURCE_DEFECT: 8 + * PM_SOURCE_SATURATED: 8 + * PM_SOURCE_SATSTAR: 10 + * PM_SOURCE_PSFSTAR: 1 + * PM_SOURCE_GOODSTAR: 1 + * PM_SOURCE_POOR_FIT_PSF: 7 + * PM_SOURCE_FAIL_FIT_PSF: 4 + * PM_SOURCE_FAINTSTAR: 4 + * PM_SOURCE_GALAXY: 2 + * PM_SOURCE_FAINT_GALAXY: 2 + * PM_SOURCE_DROP_GALAXY: 2 + * PM_SOURCE_FAIL_FIT_GAL: 2 + * PM_SOURCE_POOR_FIT_GAL: 2 + * PM_SOURCE_OTHER: ? + * + */ +int pmSourceDophotType( + pmSource *source ///< Add comment. +); + + +/** pmSourceSextractType() + * + * This function converts the source classification into the closest available + * approximation to the Sextractor classification scheme. the correspondence is + * not yet defined (TBD) . + * + * XXX: Must code this. + * + */ +int pmSourceSextractType( + pmSource *source ///< Add comment. +); + +/// @} +#endif Index: /branches/rel-1-1/psModules/src/objects/pmPSF.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSF.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSF.c (revision 12167) @@ -0,0 +1,454 @@ +/** @file pmPSF.c + * + * This file contains typedefs for the Point-Spread Function and prototypes + * for functions that calculate the PSF. + * + * @author EAM, IfA + * + * @version $Revision: 1.18 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-01 19:26:47 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ + +#include // for strcasecmp +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmGrowthCurve.h" +#include "pmPSF.h" +#include "pmModelGroup.h" +#include "pmSourcePhotometry.h" +#include "pmFPAMaskWeight.h" +#include "psVectorBracket.h" + +/*****************************************************************************/ +/* DEFINE STATEMENTS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* TYPE DEFINITIONS */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* GLOBAL VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FILE STATIC VARIABLES */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - LOCAL */ +/*****************************************************************************/ + +/*****************************************************************************/ +/* FUNCTION IMPLEMENTATION - PUBLIC */ +/*****************************************************************************/ + +/***************************************************************************** +pmPSFFree(psf): function to free a pmPSF structure + *****************************************************************************/ +static void pmPSFFree (pmPSF *psf) +{ + + if (psf == NULL) + return; + + psFree (psf->ChiTrend); + psFree (psf->ApTrend); + psFree (psf->growth); + psFree (psf->params_NEW); + return; +} + +/***************************************************************************** + pmPSFAlloc (type): allocate a pmPSF. + + NOTE: PSF model parameters which are not modeled on an image are set to NULL in psf->params. + + These are normally: + + X-center + Y-center + Sky background value + Object Normalization + *****************************************************************************/ +pmPSF *pmPSFAlloc (pmModelType type, bool poissonErrors, psPolynomial2D *psfTrendMask) +{ + int Nparams; + + pmPSF *psf = (pmPSF *) psAlloc(sizeof(pmPSF)); + + psf->type = type; + psf->chisq = 0.0; + psf->ApResid = 0.0; + psf->dApResid = 0.0; + psf->skyBias = 0.0; + psf->skySat = 0.0; + psf->poissonErrors = poissonErrors; + + // the ApTrend components are (x, y, r2rflux, flux) + // the ApTrend order is defined by the masking + // initially we set it to SKYBIAS (no X,Y variation) + // this is adjusted in psphotApResid based on the user's choices + psf->ApTrend = psPolynomial4DAlloc (PS_POLYNOMIAL_ORD, 2, 2, 1, 1); + pmPSFMaskApTrend (psf->ApTrend, PM_PSF_APTREND_SKYBIAS); + + if (psf->poissonErrors) { + psf->ChiTrend = psPolynomial1DAlloc (PS_POLYNOMIAL_ORD, 1); + } else { + psf->ChiTrend = psPolynomial1DAlloc (PS_POLYNOMIAL_ORD, 2); + } + + // don't define a growth curve : user needs to choose radius bins + psf->growth = NULL; + + Nparams = pmModelParameterCount (type); + if (!Nparams) { + psError(PS_ERR_UNKNOWN, true, "Undefined pmModelType"); + return(NULL); + } + psf->params_NEW = psArrayAlloc(Nparams); + + // the order of the PSF parameter (X,Y) fits is determined by the psfTrendMask polynomial + // (user-specified as in the recipe). the masks of psfTrendMask are applied to each + // parameter. if psfTrendMask is NULL, these polynomials are not allocated. in this case, + // the user must set them by hand (as in pmPSFfromMD). the parameters which are not fitted + // are left as NULL. these are selected by testing for them by the named values ( + // PM_PAR_XPOS, etc) + + if (psfTrendMask) { + for (int i = 0; i < psf->params_NEW->n; i++) { + if (i == PM_PAR_SKY) + continue; + if (i == PM_PAR_I0) + continue; + if (i == PM_PAR_XPOS) + continue; + if (i == PM_PAR_YPOS) + continue; + + psPolynomial2D *param = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, psfTrendMask->nX, psfTrendMask->nY); + for (int nx = 0; nx < param->nX + 1; nx++) { + for (int ny = 0; ny < param->nY + 1; ny++) { + param->mask[nx][ny] = psfTrendMask->mask[nx][ny]; + } + } + psf->params_NEW->data[i] = param; + } + } + + psMemSetDeallocator(psf, (psFreeFunc) pmPSFFree); + return(psf); +} + +/***************************************************************************** +pmModelFromPSF (*modelEXT, *psf): use the model position parameters to +construct a realization of the PSF model at the object coordinates + *****************************************************************************/ +pmModel *pmModelFromPSF (pmModel *modelEXT, pmPSF *psf) +{ + + // need to define the relationship between the modelEXT and modelPSF ? + + // find function used to set the model parameters + pmModelFromPSFFunc modelFromPSFFunc = pmModelFromPSFFunc_GetFunction (psf->type); + + // allocate a new pmModel to hold the PSF version + pmModel *modelPSF = pmModelAlloc (psf->type); + + // set model parameters for this source based on PSF information + modelFromPSFFunc (modelPSF, modelEXT, psf); + + return (modelPSF); +} + +// zero and mask out all terms: +static bool maskAllApTerms (psPolynomial4D *trend) +{ + + for (int i = 0; i < trend->nX + 1; i++) { + for (int j = 0; j < trend->nY + 1; j++) { + for (int k = 0; k < trend->nZ + 1; k++) { + for (int m = 0; m < trend->nT + 1; m++) { + trend->mask[i][j][k][m] = 1; // mask coeff + trend->coeff[i][j][k][m] = 0; // zero coeff + } + } + } + } + return true; +} + +// the PSF models the \sigma_{xy} variation of the elliptical contour as a function of position in the image with a +// polynomial. an individual object has a contour of the form (x^2/2sx^2) + (y^2/2sy^2) + sxy*x*y +// these are the values of the model->params. the psf->params term for sxy is actually fitted +// to sxy/(sxx^-2 + syy^-2)^2 + +// XXX this is only an approximate solution. A better solution would be to fit the second moment, Mxy. the +// problem here is that converting from Mxy,SXX,SYY -> SXY is a third order problem: +// Mxy = SXY * (SXX^-4 + SYY^-4 - 2 SXY ^2) + +// input: model->param, output: psf->param[PM_PAR_SXY] +double pmPSF_SXYfromModel (psF32 *modelPar) +{ + + double SXX = modelPar[PM_PAR_SXX]; + double SYY = modelPar[PM_PAR_SYY]; + double SXY = modelPar[PM_PAR_SXY]; + + double par = SXY / PS_SQR(1.0 / PS_SQR(SXX) + 1.0 / PS_SQR(SYY)); + return (par); +} + +// input: fitted psf->param, output: model->param[PM_PAR_SXY] +double pmPSF_SXYtoModel (psF32 *fittedPar) +{ + + double SXX = fittedPar[PM_PAR_SXX]; + double SYY = fittedPar[PM_PAR_SYY]; + double fit = fittedPar[PM_PAR_SXY]; + + double SXY = fit * PS_SQR(1.0 / PS_SQR(SXX) + 1.0 / PS_SQR(SYY)); + + assert (!isnan(SXY)); + + return SXY; +} + +// generate a psf model of the requested type, with fixed shape +pmPSF *pmPSFBuildSimple (char *typeName, float sxx, float syy, float sxy, ...) +{ + + va_list ap; + va_start(ap, sxy); + + pmModelType type = pmModelSetType (typeName); + psPolynomial2D *psfTrend = psPolynomial2DAlloc (PS_POLYNOMIAL_ORD, 0, 0); + pmPSF *psf = pmPSFAlloc (type, true, psfTrend); + + // set the psf shape parameters + psPolynomial2D *poly = psf->params_NEW->data[PM_PAR_SXX]; + poly->coeff[0][0] = M_SQRT2*sxx; + + poly = psf->params_NEW->data[PM_PAR_SYY]; + poly->coeff[0][0] = M_SQRT2*syy; + + poly = psf->params_NEW->data[PM_PAR_SXY]; + poly->coeff[0][0] = sxy; + + for (int i = PM_PAR_SXY + 1; i < psf->params_NEW->n; i++) { + poly = psf->params_NEW->data[i]; + poly->coeff[0][0] = (psF32)va_arg(ap, psF64); + } + va_end(ap); + + psFree (psfTrend); + return psf; +} + +/*********************************************** + * this function masks the psf.ApTrend polynomial + * to enable the specific subset of the coefficients + **********************************************/ +bool pmPSFMaskApTrend (psPolynomial4D *trend, + pmPSFApTrendOptions option) +{ + + switch (option) { + case PM_PSF_APTREND_NONE: + maskAllApTerms (trend); + return true; + + case PM_PSF_APTREND_CONSTANT: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + return true; + + case PM_PSF_APTREND_SKYBIAS: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[0][0][1][0] = 0; // unmask skybias + return true; + + case PM_PSF_APTREND_SKYSAT: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[0][0][1][0] = 0; // unmask skybias + trend->mask[0][0][0][1] = 0; // unmask skysat + return true; + + case PM_PSF_APTREND_XY_LIN: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[1][0][0][0] = 0; // unmask x + trend->mask[0][1][0][0] = 0; // unmask y + return true; + + case PM_PSF_APTREND_XY_QUAD: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[1][0][0][0] = 0; // unmask x + trend->mask[2][0][0][0] = 0; // unmask x^2 + trend->mask[1][1][0][0] = 0; // unmask x y + trend->mask[0][1][0][0] = 0; // unmask y + trend->mask[0][2][0][0] = 0; // unmask y^2 + return true; + + case PM_PSF_APTREND_SKY_XY_LIN: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[1][0][0][0] = 0; // unmask x + trend->mask[0][1][0][0] = 0; // unmask y + trend->mask[0][0][1][0] = 0; // unmask skybias + return true; + + case PM_PSF_APTREND_SKYSAT_XY_LIN: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[1][0][0][0] = 0; // unmask x + trend->mask[0][1][0][0] = 0; // unmask y + trend->mask[0][0][1][0] = 0; // unmask skybias + trend->mask[0][0][0][1] = 0; // unmask skysat + return true; + + case PM_PSF_APTREND_ALL: + default: + maskAllApTerms (trend); + trend->mask[0][0][0][0] = 0; // unmask constant + trend->mask[0][0][1][0] = 0; // unmask skybias + trend->mask[0][0][0][1] = 0; // unmask skysat + + trend->mask[1][0][0][0] = 0; // unmask x + trend->mask[2][0][0][0] = 0; // unmask x^2 + trend->mask[1][1][0][0] = 0; // unmask x y + trend->mask[0][1][0][0] = 0; // unmask y + trend->mask[0][2][0][0] = 0; // unmask y^2 + return true; + } + return false; +} + +pmPSFApTrendOptions pmPSFApTrendOptionFromName (char *name) +{ + + // no correction + if (!strcasecmp (name, "NONE")) + return PM_PSF_APTREND_NONE; + if (!strcasecmp (name, "CONSTANT")) + return PM_PSF_APTREND_CONSTANT; + if (!strcasecmp (name, "SKYBIAS")) + return PM_PSF_APTREND_SKYBIAS; + if (!strcasecmp (name, "SKYSAT")) + return PM_PSF_APTREND_SKYSAT; + if (!strcasecmp (name, "XY_LIN")) + return PM_PSF_APTREND_XY_LIN; + if (!strcasecmp (name, "XY_QUAD")) + return PM_PSF_APTREND_XY_QUAD; + if (!strcasecmp (name, "SKY_XY_LIN")) + return PM_PSF_APTREND_SKY_XY_LIN; + if (!strcasecmp (name, "SKYSAT_XY_LIN")) + return PM_PSF_APTREND_SKYSAT_XY_LIN; + if (!strcasecmp (name, "ALL")) + return PM_PSF_APTREND_ALL; + + psError(PS_ERR_UNKNOWN, true, "Unknown APTREND value: %s", name); + return PM_PSF_APTREND_ERROR; +} + +// we generate the growth curve for the center of the image with the specified psf model +bool pmGrowthCurveGenerate (pmReadout *readout, pmPSF *psf, bool ignore) +{ + + // bool status; + float xc, yc, dx, dy; + float fitMag, apMag; + float radius; + + // create template model + pmModel *modelRef = pmModelAlloc(psf->type); + + // use the center of the center pixel of the image + xc = 0.5*readout->image->numCols + readout->image->col0 + 0.5; + yc = 0.5*readout->image->numRows + readout->image->row0 + 0.5; + dx = psf->growth->maxRadius + 1; + dy = psf->growth->maxRadius + 1; + + // assign the x and y coords to the image center + // create an object with center intensity of 1000 + modelRef->params->data.F32[PM_PAR_SKY] = 0; + modelRef->params->data.F32[PM_PAR_I0] = 1000; + modelRef->params->data.F32[PM_PAR_XPOS] = xc; + modelRef->params->data.F32[PM_PAR_YPOS] = yc; + + // create modelPSF from this model + pmModel *model = pmModelFromPSF (modelRef, psf); + + // measure the fitMag for this model + pmSourcePhotometryModel (&fitMag, model); + psf->growth->fitMag = fitMag; + + // generate working image for this source + psRegion region = {xc - dx, xc + dx, yc - dy, yc + dy}; + + // force region to stop at dimensions of image + region = psRegionForImage (readout->image, region); + + psImage *view = psImageSubset (readout->image, region); + psImage *image = psImageCopy (NULL, view, PS_TYPE_F32); + psImage *mask = psImageCopy (NULL, view, PS_TYPE_U8); + + psImageInit (image, 0.0); + psImageInit (mask, 0); + + // place the reference object in the image center + // no need to mask the source here + pmModelAdd (image, NULL, model, false, false); + + // loop over a range of source fluxes + // no need to interpolate since we have forced the object center + // to 0.5, 0.5 above + for (int i = 0; i < psf->growth->radius->n; i++) { + + radius = psf->growth->radius->data.F32[i]; + + // mask the given aperture and measure the apMag + psImageKeepCircle (mask, xc, yc, radius, "OR", PM_MASK_MARK); + pmSourcePhotometryAper (&apMag, model, image, mask); + psImageKeepCircle (mask, xc, yc, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + // the 'ignore' mode is for testing + if (ignore) { + psf->growth->apMag->data.F32[i] = fitMag; + } else { + psf->growth->apMag->data.F32[i] = apMag; + } + } + + psf->growth->apRef = psVectorInterpolate (psf->growth->radius, psf->growth->apMag, psf->growth->refRadius); + psf->growth->apLoss = psf->growth->fitMag - psf->growth->apRef; + + psLogMsg ("psphot.growth", 4, "GrowthCurve : apLoss : %f\n", psf->growth->apLoss); + + psFree (view); + psFree (image); + psFree (mask); + psFree (model); + psFree (modelRef); + + return true; +} Index: /branches/rel-1-1/psModules/src/objects/pmPSF.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSF.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSF.h (revision 12167) @@ -0,0 +1,102 @@ +/* @file pmPSF.h + * + * This file contains typedefs for the Point-Spread Function and prototypes + * for functions that calculate the PSF. + * + * @author EAM, IfA + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_PSF_H +# define PM_PSF_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +typedef enum { + PM_PSF_APTREND_ERROR = 0, + PM_PSF_APTREND_NONE, + PM_PSF_APTREND_CONSTANT, + PM_PSF_APTREND_SKYBIAS, + PM_PSF_APTREND_SKYSAT, + PM_PSF_APTREND_XY_LIN, + PM_PSF_APTREND_XY_QUAD, + PM_PSF_APTREND_SKY_XY_LIN, + PM_PSF_APTREND_SKYSAT_XY_LIN, + PM_PSF_APTREND_ALL +} pmPSFApTrendOptions; + +/** pmPSF data structure + * + * It is useful to generate a model to define the point-spread-function which + * describes the flux distribution for unresolved sources in an image. In + * general, the PSF varies with position in the image. We allow any of the source + * models defined for the pmModel to represent the PSF. For a given source model, + * the 2D spatial variation of all of the source parameters, except the first + * four PSF-independent parameters, are represented as polynomial, stored in a + * psArray. The other elements of the structure define the quality of the PSF + * determination. + * + */ +typedef struct +{ + pmModelType type; ///< PSF Model in use + psArray *params_NEW; ///< Model parameters (psPolynomial2D) + // XXXXX I am changing params: we will allocate elements for the + // unfitted elements (So, Io, Xo, Yo) and leave them as NULL + // I am using a new name to catch all refs to params with gcc + psPolynomial1D *ChiTrend; ///< Chisq vs flux fit (correction for systematic errors) + psPolynomial4D *ApTrend; ///< ApResid vs (x,y,rflux) (rflux = ten(0.4*mInst)) + //pmGrowthCurve *growth; ///< apMag vs Radius // move to end as gdb is confused by it here + float ApResid; ///< apMag - psfMag (for PSF stars) + float dApResid; ///< scatter of ApResid + float skyBias; ///< implied residual sky offset from ApResid fit + float skySat; ///< roll-over of ApResid fit + float chisq; ///< PSF goodness statistic (unused??) + int nPSFstars; ///< number of stars used to measure PSF + int nApResid; ///< number of stars used to measure ApResid + bool poissonErrors; + pmGrowthCurve *growth; ///< apMag vs Radius +} +pmPSF; + +/** + * + * Allocator for the pmPSF structure. + * + */ +pmPSF *pmPSFAlloc( + pmModelType type, // type of model for PSF + bool poissonErrors, + psPolynomial2D *psfTrendMask +); + +/** + * + * This function constructs a pmModel instance based on the pmPSF description + * of the PSF. The input is a pmModel with at least the values of the centroid + * coordinates (possibly normalization if this is needed) defined. The values of + * the PSF-dependent parameters are specified for the specific realization based + * on the coordinates of the object. + * + */ +pmModel *pmModelFromPSF( + pmModel *model, ///< Add comment + pmPSF *psf ///< Add comment +); + +bool pmPSFMaskApTrend (psPolynomial4D *trend, pmPSFApTrendOptions option); + +pmPSFApTrendOptions pmPSFApTrendOptionFromName (char *name); + +double pmPSF_SXYfromModel (psF32 *modelPar); +double pmPSF_SXYtoModel (psF32 *fittedPar); + +bool pmGrowthCurveGenerate (pmReadout *readout, pmPSF *psf, bool ignore); +pmPSF *pmPSFBuildSimple (char *typeName, float sxx, float syy, float sxy, ...); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/objects/pmPSF_IO.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSF_IO.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSF_IO.c (revision 12167) @@ -0,0 +1,331 @@ +/** @file pmPSF_IO.c + * + * This file contains functions to read and write PSF models using the psMetadata Config file + * format. + * + * @author EAM, IfA + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +/*****************************************************************************/ +/* INCLUDE FILES */ +/*****************************************************************************/ + +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmPSF_IO.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +psMetadata *pmPSFtoMetadata (psMetadata *metadata, pmPSF *psf) +{ + + if (metadata == NULL) { + metadata = psMetadataAlloc (); + } + + char *modelName = pmModelGetType (psf->type); + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_MODEL_NAME", PS_DATA_STRING, "PSF model name", modelName); + + int nPar = pmModelParameterCount (psf->type) ; + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_MODEL_NPAR", PS_DATA_S32, "PSF model parameter count", nPar); + + for (int i = 0; i < nPar; i++) { + psPolynomial2D *poly = psf->params_NEW->data[i]; + if (poly == NULL) + continue; + psPolynomial2DtoMetadata (metadata, poly, "PSF_PAR%02d", i); + } + psPolynomial4DtoMetadata (metadata, psf->ApTrend, "APTREND"); + + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_AP_RESID", PS_DATA_F32, "aperture residual", psf->ApResid); + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_dAP_RESID", PS_DATA_F32, "aperture residual scatter", psf->dApResid); + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_SKY_BIAS", PS_DATA_F32, "sky bias level", psf->skyBias); + + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_CHISQ", PS_DATA_F32, "chi-square for fit", psf->chisq); + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_NSTARS", PS_DATA_S32, "number of stars used to measure PSF", psf->nPSFstars); + psMetadataAdd (metadata, PS_LIST_TAIL, "PSF_POISSON_ERRORS", PS_DATA_BOOL, "Poisson errors for fits", psf->poissonErrors); + + return metadata; +} + +pmPSF *pmPSFfromMetadata (psMetadata *metadata) +{ + + bool status; + char keyword[80]; + + char *modelName = psMetadataLookupPtr (&status, metadata, "PSF_MODEL_NAME"); + pmModelType type = pmModelSetType (modelName); + + bool poissonErrors = psMetadataLookupPtr (&status, metadata, "PSF_POISSON_ERRORS"); + if (!status) + poissonErrors = true; + + // we determine the PSF parameter polynomials from the MD-defined polynomials + pmPSF *psf = pmPSFAlloc (type, poissonErrors, NULL); + + int nPar = psMetadataLookupS32 (&status, metadata, "PSF_MODEL_NPAR"); + if (nPar != pmModelParameterCount (psf->type)) + psAbort("mismatch model par count"); + + // un-fitted terms, not in the Metadata, are left NULL + // XXX add a double-check of the expected number? + for (int i = 0; i < nPar; i++) { + sprintf (keyword, "PSF_PAR%02d", i); + psMetadata *folder = psMetadataLookupPtr (&status, metadata, keyword); + if (!status) + continue; + psPolynomial2D *poly = psPolynomial2DfromMetadata (folder); + psFree (psf->params_NEW->data[i]); + psf->params_NEW->data[i] = poly; + } + sprintf (keyword, "APTREND"); + psMetadata *folder = psMetadataLookupPtr (&status, metadata, keyword); + psPolynomial4D *poly = psPolynomial4DfromMetadata (folder); + psFree (psf->ApTrend); + psf->ApTrend = poly; + + psf->ApResid = psMetadataLookupF32 (&status, metadata, "PSF_AP_RESID"); + psf->dApResid = psMetadataLookupF32 (&status, metadata, "PSF_dAP_RESID"); + psf->skyBias = psMetadataLookupF32 (&status, metadata, "PSF_SKY_BIAS"); + + psf->chisq = psMetadataLookupF32 (&status, metadata, "PSF_CHISQ"); + psf->nPSFstars = psMetadataLookupS32 (&status, metadata, "PSF_NSTARS"); + + psFree (metadata); + return (psf); +} + +bool pmFPAviewWritePSFmodel (const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAWritePSFmodel (fpa, view, file, config); + return true; + } + + if (view->chip >= fpa->chips->n) { + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipWritePSFmodel (chip, view, file, config); + return true; + } + + if (view->cell >= chip->cells->n) { + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellWritePSFmodel (cell, view, file, config); + return true; + } + + if (view->readout >= cell->readouts->n) { + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + pmReadoutWritePSFmodel (readout, view, file, config); + return true; +} + +// read in all chip-level PSFmodel files for this FPA +bool pmFPAWritePSFmodel (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < fpa->chips->n; i++) { + + pmChip *chip = fpa->chips->data[i]; + pmChipWritePSFmodel (chip, view, file, config); + } + return true; +} + +// read in all cell-level PSFmodel files for this chip +bool pmChipWritePSFmodel (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < chip->cells->n; i++) { + + pmCell *cell = chip->cells->data[i]; + pmCellWritePSFmodel (cell, view, file, config); + } + return true; +} + +// read in all readout-level PSFmodel files for this cell +bool pmCellWritePSFmodel (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < cell->readouts->n; i++) { + + pmReadout *readout = cell->readouts->data[i]; + pmReadoutWritePSFmodel (readout, view, file, config); + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmReadoutWritePSFmodel (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + bool status; + char *filename; + char *realname; + + pmPSF *psf = psMetadataLookupPtr (&status, readout->analysis, "PSPHOT.PSF"); + + switch (file->type) { + case PM_FPA_FILE_PSF: + filename = pmFPAfileNameFromRule (file->filerule, file, view); + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + realname = pmConfigConvertFilename (filename, config, create); + + psMetadata *psfData = pmPSFtoMetadata (NULL, psf); + psMetadataConfigWrite (psfData, realname); + psFree (psfData); + psFree (realname); + psFree (filename); + return true; + + default: + fprintf (stderr, "warning: type mismatch\n"); + break; + } + return false; +} + + + +bool pmFPAviewReadPSFmodel (const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAReadPSFmodel (fpa, view, file, config); + return true; + } + + if (view->chip >= fpa->chips->n) { + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipReadPSFmodel (chip, view, file, config); + return true; + } + + if (view->cell >= chip->cells->n) { + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellReadPSFmodel (cell, view, file, config); + return true; + } + + if (view->readout >= cell->readouts->n) { + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + pmReadoutReadPSFmodel (readout, view, file, config); + return true; +} + +// read in all chip-level PSFmodel files for this FPA +bool pmFPAReadPSFmodel (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < fpa->chips->n; i++) { + + pmChip *chip = fpa->chips->data[i]; + pmChipReadPSFmodel (chip, view, file, config); + } + return true; +} + +// read in all cell-level PSFmodel files for this chip +bool pmChipReadPSFmodel (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < chip->cells->n; i++) { + + pmCell *cell = chip->cells->data[i]; + pmCellReadPSFmodel (cell, view, file, config); + } + return true; +} + +// read in all readout-level PSFmodel files for this cell +bool pmCellReadPSFmodel (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < cell->readouts->n; i++) { + + pmReadout *readout = cell->readouts->data[i]; + pmReadoutReadPSFmodel (readout, view, file, config); + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmReadoutReadPSFmodel (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + unsigned int Nfail; + char *filename; + char *realname; + + switch (file->type) { + case PM_FPA_FILE_PSF: + filename = pmFPAfileNameFromRule (file->filerule, file, view); + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + realname = pmConfigConvertFilename (filename, config, create); + + psMetadata *psfData = psMetadataConfigRead(NULL, &Nfail, realname, FALSE); + pmPSF *psf = pmPSFfromMetadata (psfData); + psMetadataAdd (readout->analysis, PS_LIST_TAIL, "PSPHOT.PSF", PS_DATA_UNKNOWN, "psphot psf", psf); + + psFree (psf); + psFree (psfData); + psFree (realname); + psFree (filename); + + return true; + + default: + fprintf (stderr, "warning: type mismatch\n"); + break; + } + return false; +} + Index: /branches/rel-1-1/psModules/src/objects/pmPSF_IO.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSF_IO.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSF_IO.h (revision 12167) @@ -0,0 +1,34 @@ +/* @file pmPSF.h + * + * This file contains typedefs for the Point-Spread Function and prototypes + * for functions that calculate the PSF. + * + * @author EAM, IfA + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_PSF_IO_H +# define PM_PSF_IO_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +psMetadata *pmPSFtoMetadata (psMetadata *metadata, pmPSF *psf); +pmPSF *pmPSFfromMetadata (psMetadata *metadata); +bool pmFPAviewWritePSFmodel (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAWritePSFmodel (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipWritePSFmodel (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellWritePSFmodel (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutWritePSFmodel (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +bool pmFPAviewReadPSFmodel (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAReadPSFmodel (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipReadPSFmodel (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellReadPSFmodel (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutReadPSFmodel (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/objects/pmPSFtry.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSFtry.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSFtry.c (revision 12167) @@ -0,0 +1,440 @@ +/** @file pmPSFtry.c + * + * XXX: need description of file purpose + * + * @author EAM, IfA + * + * @version $Revision: 1.34 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 04:35:53 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +# include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmGrowthCurve.h" +#include "pmPSF.h" +#include "pmPSFtry.h" +#include "pmModelGroup.h" +#include "pmSourceFitModel.h" +#include "pmSourcePhotometry.h" + +// ******** pmPSFtry functions ************************************************** +// * pmPSFtry holds a single pmPSF model test, with the input sources, the freely +// * fitted version of the model, the pmPSF fit to the fitted model parameters, +// * and the PSF fits to the source. It also includes the statistics from the +// * fits, both the individual sources, and the collection + +// free a pmPSFtry structure +static void pmPSFtryFree (pmPSFtry *test) +{ + + if (test == NULL) + return; + + psFree (test->psf); + psFree (test->sources); + psFree (test->metric); + psFree (test->metricErr); + psFree (test->fitMag); + psFree (test->mask); + return; +} + +// allocate a pmPSFtry based on the desired sources and the model (identified by name) +pmPSFtry *pmPSFtryAlloc (psArray *sources, char *modelName, bool poissonErrors, psPolynomial2D *psfTrendMask) +{ + + // validate the requested model name + pmModelType type = pmModelSetType (modelName); + if (type == -1) { + psError (PS_ERR_UNKNOWN, true, "invalid model name %s", modelName); + return NULL; + } + + pmPSFtry *test = (pmPSFtry *) psAlloc(sizeof(pmPSFtry)); + + test->psf = pmPSFAlloc (type, poissonErrors, psfTrendMask); + test->metric = psVectorAlloc (sources->n, PS_TYPE_F64); + test->metricErr = psVectorAlloc (sources->n, PS_TYPE_F64); + test->fitMag = psVectorAlloc (sources->n, PS_TYPE_F64); + test->mask = psVectorAlloc (sources->n, PS_TYPE_U8); + + test->sources = psArrayAlloc (sources->n); + for (int i = 0; i < sources->n; i++) { + test->sources->data[i] = pmSourceCopy (sources->data[i]); + test->mask->data.U8[i] = 0; + test->metric->data.F64[i] = 0; + test->metricErr->data.F64[i] = 0; + test->fitMag->data.F64[i] = 0; + } + + psMemSetDeallocator(test, (psFreeFunc) pmPSFtryFree); + return (test); +} + +// build a pmPSFtry for the given model: +// - fit each source with the free-floating model +// - construct the pmPSF from the collection of models +// - fit each source with the PSF-parameter models +// - measure the pmPSF quality metric (dApResid) + +// sources used in for pmPSFtry may be masked by the analysis +// mask values indicate the reason the source was rejected: + +// generate a pmPSFtry with a copy of the test PSF sources +pmPSFtry *pmPSFtryModel (psArray *sources, char *modelName, float RADIUS, bool poissonErrors, psPolynomial2D *psfTrendMask, bool applyWeights) +{ + bool status; + float x; + float y; + int Next = 0; + int Npsf = 0; + + pmPSFtry *psfTry = pmPSFtryAlloc (sources, modelName, poissonErrors, psfTrendMask); + if (psfTry == NULL) { + psError (PS_ERR_UNKNOWN, false, "failed to allocate psf model"); + return NULL; + } + + // stage 1: fit an independent model (freeModel) to all sources + psTimerStart ("fit"); + for (int i = 0; i < psfTry->sources->n; i++) { + + pmSource *source = psfTry->sources->data[i]; + source->modelEXT = pmSourceModelGuess (source, psfTry->psf->type); + if (source->modelEXT == NULL) { + psError(PS_ERR_UNKNOWN, false, "failed to build model"); + return NULL; + } + x = source->peak->x; + y = source->peak->y; + + // set temporary object mask and fit object + // fit model as EXT, not PSF + + psImageKeepCircle (source->mask, x, y, RADIUS, "OR", PM_MASK_MARK); + status = pmSourceFitModel (source, source->modelEXT, PM_SOURCE_FIT_EXT); + psImageKeepCircle (source->mask, x, y, RADIUS, "AND", PS_NOT_U8(PM_MASK_MARK)); + + // exclude the poor fits + if (!status) { + psfTry->mask->data.U8[i] = PSFTRY_MASK_EXT_FAIL; + continue; + } + Next ++; + } + psLogMsg ("psphot.psftry", 4, "fit ext: %f sec for %d of %ld sources\n", psTimerMark ("fit"), Next, sources->n); + psTrace ("psphot.psftry", 3, "keeping %d of %ld PSF candidates (EXT)\n", Next, sources->n); + + // stage 2: construct a psf (pmPSF) from this collection of model fits + if (!pmPSFFromPSFtry (psfTry, applyWeights)) { + psError(PS_ERR_UNKNOWN, false, "failed to construct a psf model from collection of sources"); + return NULL; + } + + // stage 3: refit with fixed shape parameters + psTimerStart ("fit"); + for (int i = 0; i < psfTry->sources->n; i++) { + // masked for: bad model fit, outlier in parameters + if (psfTry->mask->data.U8[i] & PSFTRY_MASK_ALL) + continue; + + pmSource *source = psfTry->sources->data[i]; + + // set shape for this model based on PSF + source->modelPSF = pmModelFromPSF (source->modelEXT, psfTry->psf); + source->modelPSF->radiusFit = RADIUS; + x = source->peak->x; + y = source->peak->y; + + // set the mask and fit the PSF model + psImageKeepCircle (source->mask, x, y, RADIUS, "OR", PM_MASK_MARK); + status = pmSourceFitModel (source, source->modelPSF, PM_SOURCE_FIT_PSF); + psImageKeepCircle (source->mask, x, y, RADIUS, "AND", PS_NOT_U8(PM_MASK_MARK)); + + // skip poor fits + if (!status) { + psfTry->mask->data.U8[i] = PSFTRY_MASK_PSF_FAIL; + continue; + } + + // XXX : use a different aperture radius from the fit radius? + if (!pmSourceMagnitudes (source, psfTry->psf, PM_SOURCE_PHOT_INTERP)) { + psfTry->mask->data.U8[i] = PSFTRY_MASK_BAD_PHOT; + continue; + } + + psfTry->fitMag->data.F64[i] = source->psfMag; + psfTry->metric->data.F64[i] = source->apMag - source->psfMag; + psfTry->metricErr->data.F64[i] = source->errMag; + Npsf ++; + } + psfTry->psf->nPSFstars = Npsf; + + psLogMsg ("psphot.psftry", 4, "fit psf: %f sec for %d of %ld sources\n", psTimerMark ("fit"), Npsf, sources->n); + psTrace ("psphot.psftry", 3, "keeping %d of %ld PSF candidates (PSF)\n", Npsf, sources->n); + + // measure the chi-square trend as a function of flux (PAR[PM_PAR_I0]) + // this should be linear for Poisson errors and quadratic for constant sky errors + psVector *flux = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + psVector *chisq = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + psVector *mask = psVectorAlloc (psfTry->sources->n, PS_TYPE_MASK); + + // generate the x and y vectors, and mask missing models + for (int i = 0; i < psfTry->sources->n; i++) { + pmSource *source = psfTry->sources->data[i]; + if (source->modelPSF == NULL) { + flux->data.F64[i] = 0.0; + chisq->data.F64[i] = 0.0; + mask->data.U8[i] = 1; + } else { + flux->data.F64[i] = source->modelPSF->params->data.F32[PM_PAR_I0]; + chisq->data.F64[i] = source->modelPSF->chisq / source->modelPSF->nDOF; + mask->data.U8[i] = 0; + } + } + + // use 3hi/3lo sigma clipping on the chisq fit + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV); + stats->clipSigma = 3.0; + stats->clipIter = 3; + + // linear clipped fit of chisq trend vs flux + bool result = psVectorClipFitPolynomial1D(psfTry->psf->ChiTrend, stats, mask, 1, chisq, NULL, flux); + psLogMsg ("pmPSFtry", 4, "chisq vs flux fit: %f +/- %f\n", stats->robustMedian, stats->robustStdev); + + psFree (flux); + psFree (stats); + psFree (mask); + psFree (chisq); + + if (!result) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit psf->ChiTrend"); + psFree(psfTry); + return NULL; + } + + for (int i = 0; i < psfTry->psf->ChiTrend->nX + 1; i++) { + psLogMsg ("pmPSFtry", 4, "chisq vs flux fit term %d: %f +/- %f\n", i, + psfTry->psf->ChiTrend->coeff[i]*pow(10000, i), + psfTry->psf->ChiTrend->coeffErr[i]*pow(10000,i)); + } + + // XXX this function wants aperture radius for pmSourcePhotometry + pmPSFtryMetric (psfTry, RADIUS); + psLogMsg ("psphot.pspsf", 3, "try model %s, ap-fit: %f +/- %f : sky bias: %f\n", + modelName, psfTry->psf->ApResid, psfTry->psf->dApResid, psfTry->psf->skyBias); + + return (psfTry); +} + +bool pmPSFtryMetric (pmPSFtry *psfTry, float RADIUS) +{ + // the measured (aperture - fit) magnitudes (dA == psfTry->metric) + // depend on both the true ap-fit (dAo) and the bias in the sky measurement: + // dA = dAo + dsky/flux + // where flux is the flux of the star + // we fit this trend to find the infinite flux aperture correction (dAo), + // the nominal sky bias (dsky), and the error on dAo + // the values of dA are contaminated by stars with close neighbors in the aperture + // we use an outlier rejection to avoid this bias + + // r2rflux = radius^2 * ten(0.4*fitMag); + psVector *r2rflux = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + + for (int i = 0; i < psfTry->sources->n; i++) { + if (psfTry->mask->data.U8[i] & PSFTRY_MASK_ALL) + continue; + r2rflux->data.F64[i] = PS_SQR(RADIUS) * pow(10.0, 0.4*psfTry->fitMag->data.F64[i]); + } + + // use 3hi/1lo sigma clipping on the r2rflux vs metric fit + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV); + stats->min = 1.0; + stats->max = 3.0; + stats->clipIter = 3; + + // fit ApTrend only to r2rflux, ignore x,y,flux variations for now + // linear clipped fit of ApResid to r2rflux + psPolynomial1D *poly = psPolynomial1DAlloc (PS_POLYNOMIAL_ORD, 1); + + // XXX test to only fit a constant offset (no SKYBIAS) + poly->mask[1] = 1; + + bool result = psVectorClipFitPolynomial1D (poly, stats, psfTry->mask, PSFTRY_MASK_ALL, psfTry->metric, psfTry->metricErr, r2rflux); + if (!result) { + psError(PS_ERR_UNKNOWN, false, "Failed to fit clipped poly"); + return false; + } + psLogMsg ("pmPSFtryMetric", 4, "fit stats: %f +/- %f\n", stats->robustMedian, stats->robustStdev); + psLogMsg ("pmPSFtryMetric", 4, "apresid: %f +/- %f\n", poly->coeff[0], poly->coeffErr[0]); + + // XXX test dump of fitted model (dump when tracing?) + if (psTraceGetLevel("psModules.objects") >= 4) { + FILE *f = fopen ("resid.dat", "w"); + psVector *apfit = psPolynomial1DEvalVector (poly, r2rflux); + for (int i = 0; i < psfTry->sources->n; i++) { + int keep = (psfTry->mask->data.U8[i] & PSFTRY_MASK_ALL); + + pmSource *source = psfTry->sources->data[i]; + float x = source->peak->x; + float y = source->peak->y; + + fprintf (f, "%d %d, %f %f %f %f %f %f %f\n", + i, keep, x, y, + psfTry->fitMag->data.F64[i], + r2rflux->data.F64[i], + psfTry->metric->data.F64[i], + psfTry->metricErr->data.F64[i], + apfit->data.F64[i]); + } + fclose (f); + psFree (apfit); + } + + pmPSFMaskApTrend (psfTry->psf->ApTrend, PM_PSF_APTREND_SKYBIAS); + psfTry->psf->ApTrend->coeff[0][0][0][0] = poly->coeff[0]; + psfTry->psf->ApTrend->coeff[0][0][1][0] = 0; + + psfTry->psf->skyBias = poly->coeff[1]; + psfTry->psf->ApResid = poly->coeff[0]; + psfTry->psf->dApResid = stats->robustStdev; + + psFree (r2rflux); + psFree (poly); + psFree (stats); + + return true; +} + +/* + (aprMag' - fitMag) = rflux*skyBias + ApTrend(x,y) + (aprMag - rflux*skyBias) - fitMag = ApTrend(x,y) + (aprMag - rflux*skyBias) = fitMag + ApTrend(x,y) +*/ + +/***************************************************************************** +pmPSFFromPSFtry (psfTry): build a PSF model from a collection of +source->modelEXT entires. The PSF ignores the first 4 (independent) model +parameters and constructs a polynomial fit to the remaining as a function of +image coordinate. + input: psfTry with fitted source->modelEXT collection, pre-allocated psf +Note: some of the array entries may be NULL (failed fits); ignore them. + *****************************************************************************/ +bool pmPSFFromPSFtry (pmPSFtry *psfTry, bool applyWeight) +{ + pmPSF *psf = psfTry->psf; + + // construct the fit vectors from the collection of objects + psVector *x = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + psVector *y = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + psVector *z = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + + psVector *dz = NULL; + if (applyWeight) { + dz = psVectorAlloc (psfTry->sources->n, PS_TYPE_F64); + } + + // construct the x,y terms + for (int i = 0; i < psfTry->sources->n; i++) { + pmSource *source = psfTry->sources->data[i]; + if (source->modelEXT == NULL) + continue; + + // use F64 for polynomial fitting + x->data.F64[i] = source->modelEXT->params->data.F32[PM_PAR_XPOS]; + y->data.F64[i] = source->modelEXT->params->data.F32[PM_PAR_YPOS]; + } + + // we are doing a robust fit. after each pass, we drop points which are + // more deviant than three sigma. + // mask is currently updated for each pass. this is inconsistent? + + psStats *stats = psStatsAlloc (PS_STAT_ROBUST_MEDIAN | PS_STAT_ROBUST_STDEV); + + // skip the unfitted parameters (X, Y, Io, Sky) + for (int i = 0; i < psf->params_NEW->n; i++) { + if (i == PM_PAR_SKY) + continue; + if (i == PM_PAR_I0) + continue; + if (i == PM_PAR_XPOS) + continue; + if (i == PM_PAR_YPOS) + continue; + + // select the per-object fitted data for this parameter + for (int j = 0; j < psfTry->sources->n; j++) { + pmSource *source = psfTry->sources->data[j]; + if (source->modelEXT == NULL) + continue; + + z->data.F64[j] = source->modelEXT->params->data.F32[i]; + if (applyWeight) { + dz->data.F64[j] = source->modelEXT->dparams->data.F32[i]; + } + + // for SXY, we actually fit SXY / (SXX^-2 + SYY^-2) + if (i == PM_PAR_SXY) { + z->data.F64[j] = pmPSF_SXYfromModel (source->modelEXT->params->data.F32); + } + } + + // fit the collection of measured parameters to the PSF 2D model + // the mask is carried from previous steps and updated with this operation + // the weight is either the parameter error or NULL, depending on 'applyWeights' + if (!psVectorClipFitPolynomial2D(psf->params_NEW->data[i], stats, psfTry->mask, 0xff, z, NULL, x, y)) { + psError(PS_ERR_UNKNOWN, false, "failed to build psf model for parameter %d", i); + return false; + } + } + + // test dump of star parameters vs position (compare with fitted values) + if (psTraceGetLevel("psModules.objects") >= 4) { + FILE *f = fopen ("params.dat", "w"); + + for (int j = 0; j < psfTry->sources->n; j++) { + pmSource *source = psfTry->sources->data[j]; + if (source == NULL) + continue; + + pmModel *model = source->modelEXT; + if (model == NULL) + continue; + + pmModel *modelPSF = pmModelFromPSF (model, psf); + + fprintf (f, "%f %f : ", model->params->data.F32[PM_PAR_XPOS], model->params->data.F32[PM_PAR_YPOS]); + + for (int i = 0; i < psf->params_NEW->n; i++) { + if (psf->params_NEW->data[i] == NULL) + continue; + fprintf (f, "%f %f : ", model->params->data.F32[i], modelPSF->params->data.F32[i]); + } + fprintf (f, "%f %d\n", model->chisq, model->nIter); + + psFree(modelPSF); + } + fclose (f); + } + + psFree (stats); + psFree (x); + psFree (y); + psFree (z); + psFree (dz); + return (true); +} + Index: /branches/rel-1-1/psModules/src/objects/pmPSFtry.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPSFtry.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPSFtry.h (revision 12167) @@ -0,0 +1,128 @@ +/* @file pmPSFtry.h + * + * This file contains code that allows the user to try to fit several + * PSF models to an image. + * + * @author EAM, IfA + * + * @version $Revision: 1.11 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_PSF_TRY_H +# define PM_PSF_TRY_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** + * + * This structure contains a pointer to the collection of sources which will + * be used to test the PSF model form. It lists the pmModelType type of model + * being tests, and contains an element to store the resulting psf + * representation. In addition, this structure carries the complete collection of + * EXT (floating parameter) and PSF (fixed parameter) model fits to each of the + * sources modelEXT and modelPSF. It also contains a mask which is set by the + * model fitting and psf fitting steps. For each model, the value of the quality + * metric is stored in the vector metric and the fitted instrumental magnitude is + * stored in fitMag. The quality metric for the PSF model is the aperture + * magnitude minus the fitted magnitude for each source. This collection of + * aperture residuals is examined in the analysis process, and a linear trend of + * the residual with the inverse object flux (ie, 100:4his structure contains a + * pointer to the collection of sources which will be used to test the PSF model + * form. It lists the pmModelType type of modmag) is fitted. The result of this + * fit is a measured sky bias (systematic error in the sky measured by the fits), + * an effective infinite-magnitude aperture correction (ApResid), and the scatter + * of the aperture correction for the ensemble of PSF stars (dApResid). The + * ultimate metric to intercompare multiple types of PSF models is the value of + * the aperture correction scatter. + * + * XXX: There are many more members in the SDRS then in the prototype code. + * I stuck with the prototype code. + * + * + */ +typedef struct +{ + pmPSF *psf; ///< Add comment. + psArray *sources; ///< pointers to the original sources + psVector *mask; ///< Add comment. + psVector *metric; ///< Add comment. + psVector *metricErr; ///< Add comment. + psVector *fitMag; ///< Add comment. +} +pmPSFtry; + + +/** pmPSFtryMaskValues + * + * The following datatype defines the masks used by the pmPSFtry analysis to + * identify sources which should or should not be included in the analysis. + * + */ +typedef enum { + PSFTRY_MASK_CLEAR = 0x00, ///< Add comment. + PSFTRY_MASK_OUTLIER = 0x01, ///< 1: outlier in psf polynomial fit (provided by psPolynomials) + PSFTRY_MASK_EXT_FAIL = 0x02, ///< 2: ext model failed to converge + PSFTRY_MASK_PSF_FAIL = 0x04, ///< 3: psf model failed to converge + PSFTRY_MASK_BAD_PHOT = 0x08, ///< 4: invalid source photometry + PSFTRY_MASK_ALL = 0x0f, ///< Add comment. +} pmPSFtryMaskValues; + + +/** pmPSFtryAlloc() + * + * Allocate a pmPSFtry data structure. + * + */ +pmPSFtry *pmPSFtryAlloc (psArray *sources, char *modelName, bool poissonErrors, psPolynomial2D *psfTrendMask); + +/** pmPSFtryModel() + * + * This function takes the input collection of sources and performs a complete + * analysis to determine a PSF model of the given type (specified by model name). + * The result is a pmPSFtry with the results of the analysis. + * + */ +pmPSFtry *pmPSFtryModel (psArray *sources, char *modelName, float RADIUS, bool poissonErrors, psPolynomial2D *psfTrendMask, bool applyWeights); + +/** pmPSFtryMetric() + * + * This function is used to measure the PSF model metric for the set of + * results contained in the pmPSFtry structure. + * + */ +bool pmPSFtryMetric( + pmPSFtry *psfTry, ///< Add comment. + float RADIUS ///< Add comment. +); + +/** pmPSFtryMetric_Alt() + * + * This function is used to measure the PSF model metric for the set of + * results contained in the pmPSFtry structure (alternative implementation). + * + */ +bool pmPSFtryMetric_Alt( + pmPSFtry *try + , ///< Add comment. + float RADIUS ///< Add comment. +); + +/** + * + * This function takes a collection of pmModel fitted models from across a + * single image and builds a pmPSF representation of the PSF. The input array of + * model fits may consist of entries to be ignored (noted by a non-zero mask + * entry). The analysis of the models fits a 2D polynomial for each parameter to + * the collection of model parameters as a function of position (and + * normalization?). In this process, some of the input models may be marked as + * outliers and excluded from the fit. These elements will be marked with a + * specific mask value (1 == PSFTRY_MASK_OUTLIER). + * + */ +bool pmPSFFromPSFtry (pmPSFtry *psfTry, bool applyWeights); + +/// @} +# endif Index: /branches/rel-1-1/psModules/src/objects/pmPeaks.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPeaks.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPeaks.c (revision 12167) @@ -0,0 +1,565 @@ +/** @file pmPeaks.c + * + * This file defines functions to detect and manipulate peaks in images + * + * @author GLG, MHPCC + * @author EAM, IfA: significant modifications. + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 04:36:55 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmPeaks.h" + +/****************************************************************************** +AddPeak(): A private function which allocates a psArray, if the peaks +argument is NULL, otherwise it adds the peak to that array. +XXX EAM : row,col now refer to image coords, NOT parent (since this is private) +XXX EAM : now also calculates fractional peak positions from 3x3 bicube region +*****************************************************************************/ +static psArray *AddPeak(psArray *peaks, + const psImage *image, + psS32 row, + psS32 col, + pmPeakType type) +{ + psTrace(__func__, 5, "---- begin ----\n"); + + if (peaks == NULL) { + peaks = psArrayAllocEmpty(100); + } + + // the peak position is in parent coordinates + pmPeak *peak = pmPeakAlloc(col + image->col0, row + image->row0, image->data.F32[row][col], type); + + // measure fractional peak position using the 3x3 bicube fit + + // ix,iy must land on image with 1 pixel border + int ix = PS_MAX (PS_MIN (col, image->numCols - 2), 1); + int iy = PS_MAX (PS_MIN (row, image->numRows - 2), 1); + + // calculate peak position relative to ix,iy + psPolynomial2D *bicube = psImageBicubeFit (image, ix + image->col0, iy + image->row0); + psPlane min = psImageBicubeMin (bicube); + psFree (bicube); + + // if min point is too deviant, use the peak value + if ((fabs(min.x) < 1.5) && (fabs(min.y) < 1.5)) { + peak->xf = min.x + ix + image->col0; + peak->yf = min.y + iy + image->row0; + } else { + peak->xf = ix; + peak->yf = iy; + } + + psArrayAdd(peaks, 100, peak); + psFree (peak); + + psTrace(__func__, 5, "---- end ----\n"); + return(peaks); +} + +/****************************************************************************** +getRowVectorFromImage(): a private function which simply returns a +psVector containing the specified row of data from the psImage. + +XXX: Is there a better way to do this? +XXX EAM: does this really need to alloc a new vector??? +*****************************************************************************/ +static psVector *getRowVectorFromImage(psImage *image, + psU32 row) +{ + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + PS_ASSERT_IMAGE_TYPE(image, PS_TYPE_F32, NULL); + + psVector *tmpVector = psVectorAlloc(image->numCols, PS_TYPE_F32); + for (psU32 col = 0; col < image->numCols ; col++) { + tmpVector->data.F32[col] = image->data.F32[row][col]; + } + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return(tmpVector); +} + +/****************************************************************************** +isItInThisRegion(): a private function which simply returns a +boolean denoting if specified coordinate is in the region. +XXX: Macro this. +*****************************************************************************/ +static bool isItInThisRegion(const psRegion valid, + psS32 x, + psS32 y) +{ + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + if ((x >= valid.x0) && + (x <= valid.x1) && + (y >= valid.y0) && + (y <= valid.y1)) { + psTrace("psModules.objects", 4, "---- %s(true) end ----\n", __func__); + return(true); + } + psTrace("psModules.objects", 4, "---- %s(false) end ----\n", __func__); + return(false); +} + +/****************************************************************************** +pmPeakAlloc(): Allocate the pmPeak data structure and set appropriate members. +*****************************************************************************/ +static void peakFree(pmPeak *tmp) +{} // used by pmIsPeak() + +pmPeak *pmPeakAlloc(psS32 x, + psS32 y, + psF32 value, + pmPeakType type) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + static int id = 1; + pmPeak *tmp = (pmPeak *) psAlloc(sizeof(pmPeak)); + *(int *)&tmp->id = id++; + tmp->x = x; + tmp->y = y; + tmp->value = value; + tmp->flux = 0; + tmp->SN = 0; + + tmp->type = type; + + psMemSetDeallocator(tmp, (psFreeFunc) peakFree); + + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmp); +} + +bool pmIsPeak(const psPtr ptr) +{ + return (psMemGetDeallocator(ptr) == (psFreeFunc)peakFree); +} + +// psSort comparison function for peaks +int pmPeaksCompareAscend (const void **a, const void **b) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + pmPeak *A = *(pmPeak **)a; + pmPeak *B = *(pmPeak **)b; + + psF32 diff; + + diff = A->value - B->value; + if (diff < FLT_EPSILON) { + psTrace("psModules.objects", 3, "---- %s(-1) end ----\n", __func__); + return (-1); + } else if (diff > FLT_EPSILON) { + psTrace("psModules.objects", 3, "---- %s(+1) end ----\n", __func__); + return (+1); + } + psTrace("psModules.objects", 3, "---- %s(0) end ----\n", __func__); + return (0); +} + +// psSort comparison function for peaks +int pmPeaksCompareDescend (const void **a, const void **b) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + pmPeak *A = *(pmPeak **)a; + pmPeak *B = *(pmPeak **)b; + + psF32 diff; + + diff = A->value - B->value; + if (diff < FLT_EPSILON) { + psTrace("psModules.objects", 3, "---- %s(+1) end ----\n", __func__); + return (+1); + } else if (diff > FLT_EPSILON) { + psTrace("psModules.objects", 3, "---- %s(-1) end ----\n", __func__); + return (-1); + } + psTrace("psModules.objects", 3, "---- %s(0) end ----\n", __func__); + return (0); +} + +/****************************************************************************** +pmFindVectorPeaks(vector, threshold): Find all local peaks in the given vector +above the given threshold. Returns a vector of type PS_TYPE_U32 containing +the location (x value) of all peaks. + +XXX: What types should be supported? Only F32 is implemented. + +XXX: We currently step through the input vector twice; once to determine the +size of the output vector, then to set the values of the output vector. +Depending upon actual use, this may need to be optimized. +*****************************************************************************/ +psVector *pmFindVectorPeaks(const psVector *vector, + psF32 threshold) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_VECTOR_NON_NULL(vector, NULL); + PS_ASSERT_VECTOR_NON_EMPTY(vector, NULL); + PS_ASSERT_VECTOR_TYPE(vector, PS_TYPE_F32, NULL); + int count = 0; + int n = vector->n; + + // + // Special case: the input vector has a single element. + // + if (n == 1) { + psVector *tmpVector = NULL; + if (vector->data.F32[0] > threshold) { + tmpVector = psVectorAlloc(1, PS_TYPE_U32); + tmpVector->data.U32[0] = 0; + } else { + tmpVector = psVectorAlloc(0, PS_TYPE_U32); + } + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmpVector); + } + + // + // Determine if first pixel is a peak + // + if ((vector->data.F32[0] > vector->data.F32[1]) && + (vector->data.F32[0] > threshold)) { + count++; + } + + // + // Determine if interior pixels are peaks + // + for (psU32 i = 1; i < n-1 ; i++) { + if ((vector->data.F32[i] > vector->data.F32[i-1]) && + (vector->data.F32[i] >= vector->data.F32[i+1]) && + (vector->data.F32[i] > threshold)) { + count++; + } + } + + // + // Determine if last pixel is a peak + // + if ((vector->data.F32[n-1] > vector->data.F32[n-2]) && + (vector->data.F32[n-1] > threshold)) { + count++; + } + + // + // We know how many peaks exist, so we now allocate a psVector to store + // those peaks. + // + psVector *tmpVector = psVectorAlloc(count, PS_TYPE_U32); + count = 0; + + // + // Determine if first pixel is a peak + // + if ((vector->data.F32[0] > vector->data.F32[1]) && + (vector->data.F32[0] > threshold)) { + tmpVector->data.U32[count++] = 0; + } + + // + // Determine if interior pixels are peaks + // + for (psU32 i = 1; i < (n-1) ; i++) { + if ((vector->data.F32[i] > vector->data.F32[i-1]) && + (vector->data.F32[i] >= vector->data.F32[i+1]) && + (vector->data.F32[i] > threshold)) { + tmpVector->data.U32[count++] = i; + } + } + + // + // Determine if last pixel is a peak + // + if ((vector->data.F32[n-1] > vector->data.F32[n-2]) && + (vector->data.F32[n-1] > threshold)) { + tmpVector->data.U32[count++] = n-1; + } + + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmpVector); +} + + +/****************************************************************************** +pmFindImagePeaks(image, threshold): Find all local peaks in the given psImage +above the given threshold. Returns a psArray containing location (x/y value) +of all peaks. + +XXX: I'm not convinced the peak type definition in the SDRS is mutually +exclusive. Some peaks can have multiple types. Edges for sure. Also, a +digonal line with the same value at each point will have a peak for every +point on that line. + +XXX: This does not work if image has either a single row, or a single column. + +*****************************************************************************/ +psArray *pmFindImagePeaks(const psImage *image, psF32 threshold) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_IMAGE_NON_NULL(image, NULL); + PS_ASSERT_IMAGE_TYPE(image, PS_TYPE_F32, NULL); + if ((image->numRows == 1) || (image->numCols == 1)) { + psError(PS_ERR_UNKNOWN, true, "Currently, input image must have at least 2 rows and 2 columns."); + psTrace("psModules.objects", 3, "---- %s(NULL) end ----\n", __func__); + return(NULL); + } + psVector *tmpRow = NULL; + psU32 col = 0; + psU32 row = 0; + psArray *list = NULL; + + // Find peaks in row 0 only. + row = 0; + tmpRow = getRowVectorFromImage((psImage *) image, row); + psVector *row1 = pmFindVectorPeaks(tmpRow, threshold); + // pmFindVectorPeaks returns coords in the vector, not corrected for col0 + + for (psU32 i = 0 ; i < row1->n ; i++ ) { + col = row1->data.U32[i]; + // is pixel (0,0) is a peak? + if (col == 0) { + if ( (image->data.F32[row][col] > image->data.F32[row][col+1]) && + (image->data.F32[row][col] > image->data.F32[row+1][col]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col+1])) { + + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + } else if (col < (image->numCols - 1)) { + if ( (image->data.F32[row][col] >= image->data.F32[row][col-1]) && + (image->data.F32[row][col] > image->data.F32[row][col+1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row+1][col]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col+1])) { + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + + } else if (col == (image->numCols - 1)) { + if ( (image->data.F32[row][col] >= image->data.F32[row][col-1]) && + (image->data.F32[row][col] > image->data.F32[row+1][col]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col-1])) { + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + + } else { + psError(PS_ERR_UNKNOWN, true, "peak specified valid column range."); + } + } + psFree (tmpRow); + psFree (row1); + + // + // Exit if this image has a single row. + // + if (image->numRows == 1) { + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(list); + } + + // + // Find peaks in interior rows only. + // + for (row = 1 ; row < (image->numRows - 1) ; row++) { + tmpRow = getRowVectorFromImage((psImage *) image, row); + row1 = pmFindVectorPeaks(tmpRow, threshold); + + // Step through all local peaks in this row. + for (psU32 i = 0 ; i < row1->n ; i++ ) { + pmPeakType myType = PM_PEAK_UNDEF; + col = row1->data.U32[i]; + + if (col == 0) { + // If col==0, then we can not read col-1 pixels + if ((image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] >= image->data.F32[row-1][col+1]) && + (image->data.F32[row][col] >= image->data.F32[row][col+1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col+1])) { + myType = PM_PEAK_EDGE; + list = AddPeak(list, image, row, col, myType); + } + } else if (col < (image->numCols - 1)) { + // This is an interior pixel + if ((image->data.F32[row][col] >= image->data.F32[row-1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] >= image->data.F32[row-1][col+1]) && + (image->data.F32[row][col] > image->data.F32[row][col-1]) && + (image->data.F32[row][col] >= image->data.F32[row][col+1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col-1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col+1])) { + if (image->data.F32[row][col] > threshold) { + if ((image->data.F32[row][col] > image->data.F32[row-1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] > image->data.F32[row-1][col+1]) && + (image->data.F32[row][col] > image->data.F32[row][col-1]) && + (image->data.F32[row][col] > image->data.F32[row][col+1]) && + (image->data.F32[row][col] > image->data.F32[row+1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row+1][col]) && + (image->data.F32[row][col] > image->data.F32[row+1][col+1])) { + myType = PM_PEAK_LONE; + } + + if ((image->data.F32[row][col] == image->data.F32[row-1][col-1]) || + (image->data.F32[row][col] == image->data.F32[row-1][col]) || + (image->data.F32[row][col] == image->data.F32[row-1][col+1]) || + (image->data.F32[row][col] == image->data.F32[row][col-1]) || + (image->data.F32[row][col] == image->data.F32[row][col+1]) || + (image->data.F32[row][col] == image->data.F32[row+1][col-1]) || + (image->data.F32[row][col] == image->data.F32[row+1][col]) || + (image->data.F32[row][col] == image->data.F32[row+1][col+1])) { + myType = PM_PEAK_FLAT; + } + + list = AddPeak(list, image, row, col, myType); + + } + } + } else if (col == (image->numCols - 1)) { + // If col==numCols - 1, then we can not read col+1 pixels + if ((image->data.F32[row][col] >= image->data.F32[row-1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] > image->data.F32[row][col-1]) && + (image->data.F32[row][col] >= image->data.F32[row][col+1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col-1]) && + (image->data.F32[row][col] >= image->data.F32[row+1][col])) { + myType = PM_PEAK_EDGE; + list = AddPeak(list, image, row, col, myType); + } + } else { + psError(PS_ERR_UNKNOWN, true, "peak specified outside valid column range."); + } + + } + psFree (tmpRow); + psFree (row1); + } + + // + // Find peaks in the last row only. + // + row = image->numRows - 1; + tmpRow = getRowVectorFromImage((psImage *) image, row); + row1 = pmFindVectorPeaks(tmpRow, threshold); + for (psU32 i = 0 ; i < row1->n ; i++ ) { + col = row1->data.U32[i]; + if (col == 0) { + if ( (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] >= image->data.F32[row-1][col+1]) && + (image->data.F32[row][col] > image->data.F32[row][col+1])) { + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + } else if (col < (image->numCols - 1)) { + if ( (image->data.F32[row][col] >= image->data.F32[row-1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] >= image->data.F32[row-1][col+1]) && + (image->data.F32[row][col] > image->data.F32[row][col-1]) && + (image->data.F32[row][col] >= image->data.F32[row][col+1])) { + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + + } else if (col == (image->numCols - 1)) { + if ( (image->data.F32[row][col] >= image->data.F32[row-1][col-1]) && + (image->data.F32[row][col] > image->data.F32[row-1][col]) && + (image->data.F32[row][col] > image->data.F32[row][col-1])) { + if (image->data.F32[row][col] > threshold) { + list = AddPeak(list, image, row, col, PM_PEAK_EDGE); + } + } + } else { + psError(PS_ERR_UNKNOWN, true, "peak specified outside valid column range."); + } + } + psFree (tmpRow); + psFree (row1); + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(list); +} + + +/****************************************************************************** +psCullPeaks(peaks, maxValue, valid): eliminate peaks from the psArray that have +a peak value above the given maximum, or fall outside the valid region. + +XXX: Should the sky value be used when comparing the maximum? + +XXX: warning message if valid is NULL? + +XXX: changed API to create a NEW output psArray (should change name as well) + +XXX: Do we free the psList elements of those culled peaks? + +XXX EAM : do we still need pmCullPeaks, or only pmPeaksSubset? +*****************************************************************************/ +psList *pmCullPeaks(psList *peaks, + psF32 maxValue, + const psRegion valid) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(peaks, NULL); + + psListElem *tmpListElem = (psListElem *) peaks->head; + psS32 indexNum = 0; + + // printf("pmCullPeaks(): list size is %d\n", peaks->size); + while (tmpListElem != NULL) { + pmPeak *tmpPeak = (pmPeak *) tmpListElem->data; + if ((tmpPeak->value > maxValue) || + (true == isItInThisRegion(valid, tmpPeak->x, tmpPeak->y))) { + psListRemoveData(peaks, (psPtr) tmpPeak); + } + + indexNum++; + tmpListElem = tmpListElem->next; + } + + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(peaks); +} + +// XXX EAM: I changed this to return a new, subset array +// rather than alter the existing one +// XXX: Fix the *valid pointer. +psArray *pmPeaksSubset( + psArray *peaks, + psF32 maxValue, + const psRegion valid) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(peaks, NULL); + + psArray *output = psArrayAllocEmpty (200); + + psTrace (".pmObjects.pmCullPeaks", 3, "list size is %ld\n", peaks->n); + + for (int i = 0; i < peaks->n; i++) { + pmPeak *tmpPeak = (pmPeak *) peaks->data[i]; + if (tmpPeak->value > maxValue) + continue; + if (isItInThisRegion(valid, tmpPeak->x, tmpPeak->y)) + continue; + psArrayAdd (output, 200, tmpPeak); + } + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(output); +} Index: /branches/rel-1-1/psModules/src/objects/pmPeaks.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmPeaks.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmPeaks.h (revision 12167) @@ -0,0 +1,151 @@ +/* @file pmPeaks.h + * + * The process of finding, measuring, and classifying astronomical sources on + * images is one of the critical tasks of the IPP or any astronomical software + * system. This file will define structures and functions related to the task + * of source detection and measurement. The elements defined in this section + * are generally low-level components which can be connected together to + * construct a complete object measurement suite. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_PEAKS_H +# define PM_PEAKS_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** pmPeakType + * + * A peak pixel may have several features which may be determined when the + * peak is found or measured. These are specified by the pmPeakType enum. + * PM_PEAK_LONE represents a single pixel which is higher than its 8 immediate + * neighbors. The PM_PEAK_EDGE represents a peak pixel which touching the image + * edge. The PM_PEAK_FLAT represents a peak pixel which has more than a specific + * number of neighbors at the same value, within some tolarence: + * + */ +typedef enum { + PM_PEAK_LONE, ///< Isolated peak. + PM_PEAK_EDGE, ///< Peak on edge. + PM_PEAK_FLAT, ///< Peak has equal-value neighbors. + PM_PEAK_UNDEF ///< Undefined. +} pmPeakType; + + +/** pmPeak data structure + * + * A source has the capacity for several types of measurements. The + * simplest measurement of a source is the location and flux of the peak pixel + * associated with the source: + * + */ +typedef struct +{ + const int id; ///< Unique ID for object + int x; ///< X-coordinate of peak pixel. + int y; ///< Y-coordinate of peak pixel. + float xf; ///< bicube fit to peak coord (x) + float yf; ///< bicube fit to peak coord (y) + float value; ///< level in detection image + float flux; ///< level in unsmoothed sci image + float SN; ///< S/N implied by detection level + pmPeakType type; ///< Description of peak. +} +pmPeak; + + +/** pmPeakAlloc() + * + * @return pmPeak* newly allocated pmPeak with all internal pointers set to NULL + */ +pmPeak *pmPeakAlloc( + int x, ///< Row-coordinate in image space + int y, ///< Col-coordinate in image space + float counts, ///< The value of the peak pixel + pmPeakType type ///< The type of peak pixel +); + +bool pmIsPeak(const psPtr ptr); + +/** pmFindVectorPeaks() + * + * Find all local peaks in the given vector above the given threshold. A peak + * is defined as any element with a value greater than its two neighbors and with + * a value above the threshold. Two types of special cases must be addressed. + * Equal value elements: If an element has the same value as the following + * element, it is not considered a peak. If an element has the same value as the + * preceding element (but not the following), then it is considered a peak. Note + * that this rule (arbitrarily) identifies flat regions by their trailing edge. + * Edge cases: At start of the vector, the element must be higher than its + * neighbor. At the end of the vector, the element must be higher or equal to its + * neighbor. These two rules again places the peak associated with a flat region + * which touches the image edge at the image edge. The result of this function is + * a vector containing the coordinates (element number) of the detected peaks + * (type psU32). + * + */ +psVector *pmFindVectorPeaks( + const psVector *vector, ///< The input vector (float) + float threshold ///< Threshold above which to find a peak +); + + +/** pmFindImagePeaks() + * + * Find all local peaks in the given image above the given threshold. This + * function should find all row peaks using pmFindVectorPeaks, then test each row + * peak and exclude peaks which are not local peaks. A peak is a local peak if it + * has a higher value than all 8 neighbors. If the peak has the same value as its + * +y neighbor or +x neighbor, it is NOT a local peak. If any other neighbors + * have an equal value, the peak is considered a valid peak. Note two points: + * first, the +x neighbor condition is already enforced by pmFindVectorPeaks. + * Second, these rules have the effect of making flat-topped regions have single + * peaks at the (+x,+y) corner. When selecting the peaks, their type must also be + * set. The result of this function is an array of pmPeak entries. + * + */ +psArray *pmFindImagePeaks( + const psImage *image, ///< The input image where peaks will be found (float) + float threshold ///< Threshold above which to find a peak +); + + +/** pmCullPeaks() + * + * Eliminate peaks from the psList that have a peak value above the given + * maximum, or fall outside the valid region. + * + */ +psList *pmCullPeaks( + psList *peaks, ///< The psList of peaks to be culled + float maxValue, ///< Cull peaks above this value + const psRegion valid ///< Cull peaks otside this psRegion +); + + +/** pmPeaksSubset() + * + * Create a new peaks array, removing certain types of peaks from the input + * array of peaks based on the given criteria. Peaks should be eliminated if they + * have a peak value above the given maximum value limit or if the fall outside + * the valid region. The result of the function is a new array with a reduced + * number of peaks. + * + */ +psArray *pmPeaksSubset( + psArray *peaks, ///< Add comment. + float maxvalue, ///< Add comment. + const psRegion valid ///< Add comment. +); + +int pmPeaksCompareAscend (const void **a, const void **b); +int pmPeaksCompareDescend (const void **a, const void **b); + +/// @} +# endif /* PM_PEAKS_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSource.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSource.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSource.c (revision 12167) @@ -0,0 +1,733 @@ +/** @file pmSource.c + * + * Functions to define and manipulate sources on images + * + * @author GLG, MHPCC + * @author EAM, IfA: significant modifications. + * + * @version $Revision: 1.25 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:14:42 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" + +static void sourceFree(pmSource *tmp) +{ + if (!tmp) + return; + + psTrace("psModules.objects", 5, "---- begin ----\n"); + psFree(tmp->peak); + psFree(tmp->pixels); + psFree(tmp->weight); + psFree(tmp->mask); + psFree(tmp->moments); + psFree(tmp->modelPSF); + psFree(tmp->modelEXT); + psFree(tmp->blends); + psTrace("psModules.objects", 5, "---- end ----\n"); +} + +void pmSourceFreePixels(pmSource *source) +{ + + if (!source) + return; + + psFree (source->pixels); + psFree (source->weight); + psFree (source->mask); + + source->pixels = NULL; + source->weight = NULL; + source->mask = NULL; + return; +} + +/****************************************************************************** +pmSourceAlloc(): Allocate the pmSource structure and initialize its members +to NULL. +*****************************************************************************/ +pmSource *pmSourceAlloc() +{ + psTrace("psModules.objects", 5, "---- begin ----\n"); + static int id = 1; + pmSource *source = (pmSource *) psAlloc(sizeof(pmSource)); + *(int *)&source->id = id++; + source->peak = NULL; + source->pixels = NULL; + source->weight = NULL; + source->mask = NULL; + source->moments = NULL; + source->blends = NULL; + source->modelPSF = NULL; + source->modelEXT = NULL; + source->type = PM_SOURCE_TYPE_UNKNOWN; + source->mode = PM_SOURCE_MODE_DEFAULT; + psMemSetDeallocator(source, (psFreeFunc) sourceFree); + + // default values are NAN + source->psfMag = NAN; + source->extMag = NAN; + source->errMag = NAN; + source->apMag = NAN; + source->sky = NAN; + source->skyErr = NAN; + source->pixWeight = NAN; + + psTrace("psModules.objects", 5, "---- end ----\n"); + return(source); +} + +bool pmIsSource(const psPtr ptr) +{ + return (psMemGetDeallocator(ptr) == (psFreeFunc)sourceFree); +} + +/****************************************************************************** +pmSourceCopy(): copy the pmSource structure and contents +XXX : are we OK with incrementing the ID? +*****************************************************************************/ +pmSource *pmSourceCopy(pmSource *in) +{ + // this copy is used to allow multiple fit attempts on the + // same object. the pixels, weight, and mask arrays all point to + // the same original subarrays. the peak and moments point at + // the original values. + pmSource *source = pmSourceAlloc (); + source->peak = psMemIncrRefCounter (in->peak); + source->pixels = psMemIncrRefCounter (in->pixels); + source->weight = psMemIncrRefCounter (in->weight); + source->mask = psMemIncrRefCounter (in->mask); + source->moments = psMemIncrRefCounter (in->moments); + source->blends = NULL; + source->modelPSF = NULL; + source->modelEXT = NULL; + source->type = in->type; + source->mode = in->mode; + psMemSetDeallocator(source, (psFreeFunc) sourceFree); + + // default values are NAN + source->psfMag = NAN; + source->extMag = NAN; + source->errMag = NAN; + source->apMag = NAN; + source->sky = NAN; + source->skyErr = NAN; + source->pixWeight = NAN; + + return(source); +} + +// x,y are defined in the parent image coords of readout->image +bool pmSourceDefinePixels(pmSource *mySource, + const pmReadout *readout, + psF32 x, + psF32 y, + psF32 Radius) +{ + psRegion srcRegion; + + // Grab a subimage of the original image of size (2 * outerRadius). + srcRegion = psRegionForSquare (x, y, Radius); + srcRegion = psRegionForImage (readout->image, srcRegion); + + mySource->pixels = psMemIncrRefCounter(psImageSubset(readout->image, srcRegion)); + mySource->weight = psMemIncrRefCounter(psImageSubset(readout->weight, srcRegion)); + mySource->mask = psMemIncrRefCounter(psImageSubset(readout->mask, srcRegion)); + mySource->region = srcRegion; + + return true; +} + +bool pmSourceRedefinePixels(pmSource *mySource, + const pmReadout *readout, + psF32 x, + psF32 y, + psF32 Radius) +{ + bool extend; + psRegion newRegion; + + if (Radius == 0) + return false; + + // check to see if new region is completely contained within old region + newRegion = psRegionForSquare (x, y, Radius); + newRegion = psRegionForImage (readout->image, newRegion); + + extend = false; + extend |= (int)(newRegion.x0) < (int)(mySource->region.x0); + extend |= (int)(newRegion.x1) > (int)(mySource->region.x1); + extend |= (int)(newRegion.y0) < (int)(mySource->region.y0); + extend |= (int)(newRegion.y1) > (int)(mySource->region.y1); + + extend |= (mySource->pixels == NULL); + extend |= (mySource->weight == NULL); + extend |= (mySource->mask == NULL); + + // extend = true; + if (extend) { + // Grab a new subimage + psFree (mySource->pixels); + psFree (mySource->weight); + psFree (mySource->mask); + + mySource->pixels = psMemIncrRefCounter(psImageSubset(readout->image, newRegion)); + mySource->weight = psMemIncrRefCounter(psImageSubset(readout->weight, newRegion)); + mySource->mask = psMemIncrRefCounter(psImageSubset(readout->mask, newRegion)); + mySource->region = newRegion; + } + + return extend; +} + +/****************************************************************************** + pmSourcePSFClump(source, recipe): Find the likely PSF clump in the + sigma-x, sigma-y plane. return 0,0 clump in case of error. +*****************************************************************************/ + +// XXX EAM include a S/N cutoff in selecting the sources? +pmPSFClump pmSourcePSFClump(psArray *sources, psMetadata *recipe) +{ + psTrace("psModules.objects", 5, "---- begin ----\n"); + + # define NPIX 10 + # define SCALE 0.1 + + psArray *peaks = NULL; + pmPSFClump errorClump = {-1.0, -1.0, 0.0, 0.0}; + pmPSFClump emptyClump = {+0.0, +0.0, 0.0, 0.0}; + pmPSFClump psfClump; + + PS_ASSERT_PTR_NON_NULL(sources, errorClump); + PS_ASSERT_PTR_NON_NULL(recipe, errorClump); + + bool status = true; + float PSF_CLUMP_SN_LIM = psMetadataLookupF32 (&status, recipe, "PSF_CLUMP_SN_LIM"); + if (!status) { + PSF_CLUMP_SN_LIM = 0; + } + + // find the sigmaX, sigmaY clump + { + psStats *stats = NULL; + psImage *splane = NULL; + int binX, binY; + bool status; + + psF32 SX_MAX = psMetadataLookupF32 (&status, recipe, "MOMENTS_SX_MAX"); + if (!status) + SX_MAX = 10.0; + psF32 SY_MAX = psMetadataLookupF32 (&status, recipe, "MOMENTS_SY_MAX"); + if (!status) + SY_MAX = 10.0; + psF32 AR_MAX = psMetadataLookupF32 (&status, recipe, "MOMENTS_AR_MAX"); + if (!status) + AR_MAX = 3.0; + psF32 AR_MIN = 1.0 / AR_MAX; + + // construct a sigma-plane image + splane = psImageAlloc (SX_MAX/SCALE, SY_MAX/SCALE, PS_TYPE_F32); + psImageInit(splane, 0); // psImageAlloc doesn't zero the data + + // place the sources in the sigma-plane image (ignore 0,0 values?) + int nValid = 0; + for (psS32 i = 0 ; i < sources->n ; i++) + { + pmSource *tmpSrc = (pmSource *) sources->data[i]; + if (tmpSrc == NULL) + continue; + if (tmpSrc->moments == NULL) + continue; + if (tmpSrc->moments->SN < PSF_CLUMP_SN_LIM) + continue; + + // Sx,Sy are limited at 0. a peak at 0,0 is artificial + if (fabs(tmpSrc->moments->Sx) < 0.05) + continue; + if (fabs(tmpSrc->moments->Sy) < 0.05) + continue; + if ((tmpSrc->moments->Sx / tmpSrc->moments->Sy) > AR_MAX) + continue; + if ((tmpSrc->moments->Sx / tmpSrc->moments->Sy) < AR_MIN) + continue; + if (tmpSrc->mode & PM_SOURCE_MODE_BLEND) + continue; + + // for the moment, force splane dimensions to be 10x10 image pix + binX = tmpSrc->moments->Sx/SCALE; + if (binX < 0) + continue; + if (binX >= splane->numCols) + continue; + + binY = tmpSrc->moments->Sy/SCALE; + if (binY < 0) + continue; + if (binY >= splane->numRows) + continue; + + splane->data.F32[binY][binX] += 1.0; + nValid ++; + } + + // find the peak in this image + stats = psStatsAlloc (PS_STAT_MAX); + if (!psImageStats (stats, splane, NULL, 0)) { + psError(PS_ERR_UNKNOWN, false, "Unable to get image statistics.\n"); + psFree(stats); + psFree(splane); + return emptyClump; + } + peaks = pmFindImagePeaks (splane, stats[0].max / 2); + psTrace ("psModules.objects", 2, "clump threshold is %f\n", stats[0].max/2); + + const bool keep_psf_clump = psMetadataLookupBool(NULL, recipe, "KEEP_PSF_CLUMP"); + if (keep_psf_clump) + { + psMetadataAdd(recipe, PS_LIST_TAIL, + "PSF_CLUMP", PS_DATA_IMAGE, "Image of PSF coefficients", splane); + } + psFree (splane); + psFree (stats); + + // if we failed to find a valid peak, return the empty clump (failure signal) + if (peaks == NULL) + { + psLogMsg ("psphot", 3, "failed to find a peak in the PSF clump image\n"); + if (nValid == 0) { + psLogMsg ("psphot", 3, "no valid sources kept for PSF search\n"); + } else { + psLogMsg ("psphot", 3, "no significant peak\n"); + } + return (emptyClump); + } + } + + // measure statistics on Sx, Sy if Sx, Sy within range of clump + { + pmPeak *clump; + psF32 minSx, maxSx; + psF32 minSy, maxSy; + psVector *tmpSx = NULL; + psVector *tmpSy = NULL; + psStats *stats = NULL; + + // select the single highest peak + psArraySort (peaks, pmPeaksCompareDescend); + clump = peaks->data[0]; + psTrace ("psModules.objects", 2, "clump is at %d, %d (%f)\n", clump->x, clump->y, clump->value); + + // define section window for clump + minSx = clump->x * SCALE - 0.2; + maxSx = clump->x * SCALE + 0.2; + minSy = clump->y * SCALE - 0.2; + maxSy = clump->y * SCALE + 0.2; + + tmpSx = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + tmpSy = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + + // create vectors with Sx, Sy values in window + // clip sources based on S/N + for (psS32 i = 0 ; i < sources->n ; i++) + { + pmSource *tmpSrc = (pmSource *) sources->data[i]; + + if (tmpSrc == NULL) + continue; + if (tmpSrc->moments == NULL) + continue; + if (tmpSrc->moments->SN < PSF_CLUMP_SN_LIM) + continue; + + if (tmpSrc->moments->Sx < minSx) + continue; + if (tmpSrc->moments->Sx > maxSx) + continue; + if (tmpSrc->moments->Sy < minSy) + continue; + if (tmpSrc->moments->Sy > maxSy) + continue; + tmpSx->data.F32[tmpSx->n] = tmpSrc->moments->Sx; + tmpSy->data.F32[tmpSy->n] = tmpSrc->moments->Sy; + tmpSx->n++; + tmpSy->n++; + if (tmpSx->n == tmpSx->nalloc) { + psVectorRealloc (tmpSx, tmpSx->nalloc + 100); + psVectorRealloc (tmpSy, tmpSy->nalloc + 100); + } + } + + // measures stats of Sx, Sy + stats = psStatsAlloc (PS_STAT_CLIPPED_MEAN | PS_STAT_CLIPPED_STDEV); + + psVectorStats (stats, tmpSx, NULL, NULL, 0); + psfClump.X = stats->clippedMean; + psfClump.dX = stats->clippedStdev; + + psVectorStats (stats, tmpSy, NULL, NULL, 0); + psfClump.Y = stats->clippedMean; + psfClump.dY = stats->clippedStdev; + + psTrace ("psModules.objects", 2, "clump X, Y: %f, %f\n", psfClump.X, psfClump.Y); + psTrace ("psModules.objects", 2, "clump DX, DY: %f, %f\n", psfClump.dX, psfClump.dY); + + psFree (stats); + psFree (peaks); + psFree (tmpSx); + psFree (tmpSy); + } + + psTrace("psModules.objects", 5, "---- end ----\n"); + return (psfClump); +} + +/****************************************************************************** + pmSourceRoughClass(source, recipe): make a guess at the source + classification. + XXX: How can this function ever return FALSE? +*****************************************************************************/ + +bool pmSourceRoughClass(psArray *sources, psMetadata *recipe, pmPSFClump clump) +{ + psTrace("psModules.objects", 5, "---- begin ----"); + + PS_ASSERT_PTR_NON_NULL(sources, false); + PS_ASSERT_PTR_NON_NULL(recipe, false); + + int Nsat = 0; + int Next = 0; + int Nstar = 0; + int Npsf = 0; + int Ncr = 0; + int Nsatstar = 0; + psRegion inner; + + // report stats on S/N values for star-like objects + psVector *starsn_peaks = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + psVector *starsn_moments = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + + // get basic parameters, or set defaults + bool status; + float PSF_SN_LIM = psMetadataLookupF32 (&status, recipe, "PSF_SN_LIM"); + if (!status) + PSF_SN_LIM = 20.0; + float PSF_CLUMP_NSIGMA = psMetadataLookupF32 (&status, recipe, "PSF_CLUMP_NSIGMA"); + if (!status) + PSF_CLUMP_NSIGMA = 1.5; + float INNER_RADIUS = psMetadataLookupF32 (&status, recipe, "SKY_INNER_RADIUS"); + + // XXX allow clump size to be scaled relative to sigmas? + // make rough IDs based on clumpX,Y,DX,DY + for (psS32 i = 0 ; i < sources->n ; i++) { + + pmSource *source = (pmSource *) sources->data[i]; + + source->peak->type = 0; + + // we are basically classifying by moments; use the default if not found + if (!source->moments) { + source->type = PM_SOURCE_TYPE_STAR; + source->mode |= PM_SOURCE_MODE_DEFAULT; + Nstar++; + continue; + } + + psF32 sigX = source->moments->Sx; + psF32 sigY = source->moments->Sy; + + // XXX EAM : can we use the value of SATURATE if mask is NULL? + inner = psRegionForSquare (source->peak->x, source->peak->y, 2); + inner = psRegionForImage (source->mask, inner); + int Nsatpix = psImageCountPixelMask (source->mask, inner, PM_MASK_SAT); + + // saturated star (size consistent with PSF or larger) + // Nsigma should be user-configured parameter + bool big = (sigX > (clump.X - clump.dX)) && (sigY > (clump.Y - clump.dY)); + big = true; + if ((Nsatpix > 1) && big) { + source->type = PM_SOURCE_TYPE_STAR; + source->mode |= PM_SOURCE_MODE_SATSTAR; + // recalculate moments here with larger box? + pmSourceMoments (source, INNER_RADIUS); + Nsatstar ++; + continue; + } + + // saturated object (not a star, eg bleed trails, hot pixels) + if (Nsatpix > 1) { + source->type = PM_SOURCE_TYPE_SATURATED; + source->mode |= PM_SOURCE_MODE_DEFAULT; + Nsat ++; + continue; + } + + // likely defect (too small to be stellar) (push out to 3 sigma) + // low S/N objects which are small are probably stellar + // only set candidate defects if + // XXX these limits are quite arbitrary + if ((sigX < 0.05) || (sigY < 0.05)) { + source->type = PM_SOURCE_TYPE_DEFECT; + source->mode |= PM_SOURCE_MODE_DEFAULT; + Ncr ++; + continue; + } + + // likely unsaturated extended source (too large to be stellar) + if ((sigX > (clump.X + 3*clump.dX)) || (sigY > (clump.Y + 3*clump.dY))) { + source->type = PM_SOURCE_TYPE_EXTENDED; + source->mode |= PM_SOURCE_MODE_DEFAULT; + Next ++; + continue; + } + + // the rest are probable stellar objects + starsn_moments->data.F32[starsn_moments->n] = source->moments->SN; + starsn_moments->n ++; + starsn_peaks->data.F32[starsn_peaks->n] = source->peak->SN; + starsn_peaks->n ++; + Nstar ++; + + // PSF star (within 1.5 sigma of clump center, S/N > limit) + psF32 radius = hypot ((sigX-clump.X)/clump.dX, (sigY-clump.Y)/clump.dY); + if ((source->moments->SN > PSF_SN_LIM) && (radius < PSF_CLUMP_NSIGMA)) { + source->type = PM_SOURCE_TYPE_STAR; + source->mode |= PM_SOURCE_MODE_PSFSTAR; + Npsf ++; + continue; + } + + // random type of star + source->type = PM_SOURCE_TYPE_STAR; + source->mode |= PM_SOURCE_MODE_DEFAULT; + } + + psStats *stats = NULL; + stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX); + psVectorStats (stats, starsn_moments, NULL, NULL, 0); + psLogMsg ("pmObjects", 3, "SN range (moments): %f - %f\n", stats[0].min, stats[0].max); + psFree (starsn_moments); + psFree (stats); + + stats = psStatsAlloc (PS_STAT_MIN | PS_STAT_MAX); + psVectorStats (stats, starsn_peaks, NULL, NULL, 0); + psLogMsg ("pmObjects", 3, "SN range (peaks) : %f - %f\n", stats[0].min, stats[0].max); + psFree (starsn_peaks); + psFree (stats); + + psTrace ("psModules.objects", 2, "Nstar: %3d\n", Nstar); + psTrace ("psModules.objects", 2, "Npsf: %3d\n", Npsf); + psTrace ("psModules.objects", 2, "Next: %3d\n", Next); + psTrace ("psModules.objects", 2, "Nsatstar: %3d\n", Nsatstar); + psTrace ("psModules.objects", 2, "Nsat: %3d\n", Nsat); + psTrace ("psModules.objects", 2, "Ncr: %3d\n", Ncr); + + psTrace("psModules.objects", 5, "---- end ----\n"); + return true; +} + +/****************************************************************************** +pmSourceMoments(source, radius): this function takes a subImage defined in the +pmSource data structure, along with the peak location, and determines the +various moments associated with that peak. + +Requires the following to have been created: + pmSource + pmSource->peak + pmSource->pixels + pmSource->weight + pmSource->mask + +XXX: The peak calculations are done in image coords, not subImage coords. + +XXX EAM : this version clips input pixels on S/N +XXX EAM : this version returns false for several reasons +*****************************************************************************/ +# define VALID_RADIUS(X,Y,RAD2) (((RAD2) >= (PS_SQR(X) + PS_SQR(Y))) ? 1 : 0) + +bool pmSourceMoments(pmSource *source, + psF32 radius) +{ + psTrace("psModules.objects", 5, "---- begin ----\n"); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_PTR_NON_NULL(source->peak, false); + PS_ASSERT_PTR_NON_NULL(source->pixels, false); + PS_ASSERT_PTR_NON_NULL(source->mask, false); + PS_ASSERT_FLOAT_LARGER_THAN(radius, 0.0, false); + + // + // XXX: Verify the setting for sky if source->moments == NULL. + // + psF32 sky = 0.0; + if (source->moments == NULL) { + source->moments = pmMomentsAlloc(); + } else { + sky = source->moments->Sky; + } + + // + // Sum = SUM (z - sky) + // X1 = SUM (x - xc)*(z - sky) + // X2 = SUM (x - xc)^2 * (z - sky) + // XY = SUM (x - xc)*(y - yc)*(z - sky) + // + psF32 peakPixel = -PS_MAX_F32; + psS32 numPixels = 0; + psF32 Sum = 0.0; + psF32 Var = 0.0; + psF32 X1 = 0.0; + psF32 Y1 = 0.0; + psF32 X2 = 0.0; + psF32 Y2 = 0.0; + psF32 XY = 0.0; + psF32 x = 0; + psF32 y = 0; + psF32 R2 = PS_SQR(radius); + + psF32 xPeak = source->peak->x; + psF32 yPeak = source->peak->y; + psF32 xOff = source->pixels->col0 - source->peak->x; + psF32 yOff = source->pixels->row0 - source->peak->y; + + // XXX why do I get different results for these two methods of finding Sx? + // XXX Sx, Sy would be better measured if we clip pixels close to sky + // XXX Sx, Sy can still be imaginary, so we probably need to keep Sx^2? + // We loop through all pixels in this subimage (source->pixels), and for each + // pixel that is not masked, AND within the radius of the peak pixel, we + // proceed with the moments calculation. need to do two loops for a + // numerically stable result. first loop: get the sums. + // XXX EAM : mask == 0 is valid + + for (psS32 row = 0; row < source->pixels->numRows ; row++) { + + psF32 *vPix = source->pixels->data.F32[row]; + psF32 *vWgt = source->weight->data.F32[row]; + psU8 *vMsk = (source->mask == NULL) ? NULL : source->mask->data.U8[row]; + + for (psS32 col = 0; col < source->pixels->numCols ; col++, vPix++, vWgt++) { + if ((vMsk != NULL) && *vMsk) { + vMsk++; + continue; + } + + psF32 xDiff = col + xOff; + psF32 yDiff = row + yOff; + + // radius is just a function of (xDiff, yDiff) + if (!VALID_RADIUS(xDiff, yDiff, R2)) { + if (vMsk != NULL) + vMsk++; + continue; + } + + psF32 pDiff = *vPix - sky; + psF32 wDiff = *vWgt; + + // XXX EAM : check for valid S/N in pixel + // XXX EAM : should this limit be user-defined? + if (PS_SQR(pDiff) < wDiff) { + if (vMsk != NULL) + vMsk++; + continue; + } + + Var += wDiff; + Sum += pDiff; + + psF32 xWght = xDiff * pDiff; + psF32 yWght = yDiff * pDiff; + + X1 += xWght; + Y1 += yWght; + + XY += xDiff * yWght; + X2 += xDiff * xWght; + Y2 += yDiff * yWght; + + peakPixel = PS_MAX (*vPix, peakPixel); + numPixels++; + if (vMsk != NULL) + vMsk++; + } + } + + // if we have less than (1/4) of the possible pixels, force a retry + // XXX EAM - the limit is a bit arbitrary. make it user defined? + if ((numPixels < 0.75*R2) || (Sum <= 0)) { + psTrace ("psModules.objects", 3, "no valid pixels for source\n"); + psTrace("psModules.objects", 5, "---- end (false) ----\n"); + return (false); + } + + psTrace ("psModules.objects", 4, "sky: %f Sum: %f X1: %f Y1: %f X2: %f Y2: %f XY: %f Npix: %d\n", + sky, Sum, X1, Y1, X2, Y2, XY, numPixels); + + // + // first moment X = X1/Sum + xc + // second moment X = sqrt (X2/Sum - (X1/Sum)^2) + // Sxy = XY / Sum + // + x = X1/Sum; + y = Y1/Sum; + if ((fabs(x) > radius) || (fabs(y) > radius)) { + psTrace ("psModules.objects", 3, "large centroid swing; invalid peak %d, %d\n", + source->peak->x, source->peak->y); + psTrace("psModules.objects", 5, "---- end(false) ----\n"); + return (false); + } + + source->moments->x = x + xPeak; + source->moments->y = y + yPeak; + + // XXX EAM : Sxy needs to have x*y subtracted + source->moments->Sxy = XY/Sum - x*y; + source->moments->Sum = Sum; + source->moments->SN = Sum / sqrt(Var); + source->moments->Peak = peakPixel; + source->moments->nPixels = numPixels; + + // XXX EAM : these values can be negative, so we need to limit the range + source->moments->Sx = sqrt(PS_MAX(X2/Sum - PS_SQR(x), 0)); + source->moments->Sy = sqrt(PS_MAX(Y2/Sum - PS_SQR(y), 0)); + + psTrace ("psModules.objects", 4, + "sky: %f Sum: %f x: %f y: %f Sx: %f Sy: %f Sxy: %f\n", + sky, Sum, source->moments->x, source->moments->y, + source->moments->Sx, source->moments->Sy, source->moments->Sxy); + + psTrace("psModules.objects", 5, "---- end ----\n"); + return(true); +} + +pmModel *pmSourceSelectModel (pmSource *source) +{ + switch (source->type) { + case PM_SOURCE_TYPE_STAR: + return source->modelPSF; + + case PM_SOURCE_TYPE_EXTENDED: + return source->modelEXT; + + default: + return NULL; + } + return NULL; +} Index: /branches/rel-1-1/psModules/src/objects/pmSource.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSource.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSource.h (revision 12167) @@ -0,0 +1,232 @@ +/* @file pmSource.h + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.10 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_SOURCE_H +# define PM_SOURCE_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** + * In the object analysis process, we will use specific mask values to mark the + * image pixels. The following structure defines the relevant mask values. + * + * XXX: This is probably a bad solution: we will want to set mask values + * outside of the PSPHOT code. Perhaps we can set up a registered set of mask + * values with specific meanings that other functions can add to or define? + + * XXX We will only use the PM_MASK_xxx mask values +typedef enum { + PM_SOURCE_MASK_CLEAR = 0x00, + PM_SOURCE_MASK_INVALID = 0x01, + PM_SOURCE_MASK_SATURATED = 0x02, + PM_SOURCE_MASK_MARKED = 0x08, +} psphotMaskValues; +*/ + +/** pmSourceType enumeration + * + * A given source may be identified as most-likely to be one of several source + * types. The pmSource entry pmSourceType defines the current best-guess for this + * source. + * + * XXX: The values given below are currently illustrative and will require + * some modification as the source classification code is developed. (TBD) + * + */ +typedef enum { + PM_SOURCE_TYPE_UNKNOWN, ///< a cosmic-ray + PM_SOURCE_TYPE_DEFECT, ///< a cosmic-ray + PM_SOURCE_TYPE_SATURATED, ///< random saturated pixels + PM_SOURCE_TYPE_STAR, ///< a good-quality star + PM_SOURCE_TYPE_EXTENDED, ///< an extended object (eg, galaxy) +} pmSourceType; + +typedef enum { + PM_SOURCE_MODE_DEFAULT = 0x0000, ///< + PM_SOURCE_MODE_PSFMODEL = 0x0001, ///< + PM_SOURCE_MODE_EXTMODEL = 0x0002, ///< + PM_SOURCE_MODE_SUBTRACTED = 0x0004, ///< + PM_SOURCE_MODE_FITTED = 0x0008, ///< + PM_SOURCE_MODE_FAIL = 0x0010, ///< + PM_SOURCE_MODE_POOR = 0x0020, ///< + PM_SOURCE_MODE_PAIR = 0x0040, ///< + PM_SOURCE_MODE_PSFSTAR = 0x0080, ///< + PM_SOURCE_MODE_SATSTAR = 0x0100, ///< + PM_SOURCE_MODE_BLEND = 0x0200, ///< + PM_SOURCE_MODE_LINEAR = 0x0400, ///< + PM_SOURCE_MODE_TEMPSUB = 0x0800, ///< XXX get me a better name! + PM_SOURCE_MODE_EXTERNAL = 0x1000, ///< XXX get me a better name! +} pmSourceMode; + +/** pmSource data structure + * + * This source has the capacity for several types of measurements. The + * simplest measurement of a source is the location and flux of the peak pixel + * associated with the source: + * + */ +typedef struct +{ + const int id; ///< Unique ID for object + pmPeak *peak; ///< Description of peak pixel. + psImage *pixels; ///< Rectangular region including object pixels. + psImage *weight; ///< Image variance. + psImage *mask; ///< Mask which marks pixels associated with objects. + pmMoments *moments; ///< Basic moments measure for the object. + pmModel *modelPSF; ///< PSF Model fit (parameters and type) + pmModel *modelEXT; ///< EXT (floating) Model fit (parameters and type). + pmSourceType type; ///< Best identification of object. + pmSourceMode mode; ///< Best identification of object. + psArray *blends; + float psfMag; ///< calculated from flux in modelPsf + float extMag; ///< calculated from flux in modelEXT + float errMag; ///< error in psfMag OR extMag (depending on type) + float apMag; ///< apMag corresponding to psfMag or extMag (depending on type) + float pixWeight; // model-weighted coverage of valid pixels + psRegion region; // area on image covered by selected pixels + float sky, skyErr; //?< The sky and its error at the center of the object +} +pmSource; + +/** pmPSFClump data structure + * + * A collection of object moment measurements can be used to determine + * approximate object classes. The key to this analysis is the location and + * statistics (in the second-moment plane, + * + */ +typedef struct +{ + float X; + float dX; + float Y; + float dY; +} +pmPSFClump; + + +/** pmSourceAlloc() + * + */ +pmSource *pmSourceAlloc(); + +/** pmSourceCopy() + * + */ +pmSource *pmSourceCopy(pmSource *source); + +// free just the pixels for a source, keeping derived data +void pmSourceFreePixels(pmSource *source); + +bool pmIsSource(const psPtr ptr); + +/** pmSourceDefinePixels() + * + * Define psImage subarrays for the source located at coordinates x,y on the + * image set defined by readout. The pixels defined by this operation consist of + * a square window (of full width 2Radius+1) centered on the pixel which contains + * the given coordinate, in the frame of the readout. The window is defined to + * have limits which are valid within the boundary of the readout image, thus if + * the radius would fall outside the image pixels, the subimage is truncated to + * only consist of valid pixels. If readout->mask or readout->weight are not + * NULL, matching subimages are defined for those images as well. This function + * fails if no valid pixels can be defined (x or y less than Radius, for + * example). This function should be used to define a region of interest around a + * source, including both source and sky pixels. + * + */ +bool pmSourceDefinePixels( + pmSource *mySource, ///< source to be re-defined + const pmReadout *readout, ///< base the source on this readout + psF32 x, ///< center coords of source + psF32 y, ///< center coords of source + psF32 Radius ///< size of box on source +); + +bool pmSourceRedefinePixels ( + pmSource *mySource, ///< source to be re-defined + const pmReadout *readout, ///< base the source on this readout + psF32 x, ///< center coords of source + psF32 y, ///< center coords of source + psF32 Radius ///< size of box on source +); + +/** pmSourcePSFClump() + * + * We use the source moments to make an initial, approximate source + * classification, and as part of the information needed to build a PSF model for + * the image. As long as the PSF shape does not vary excessively across the + * image, the sources which are represented by a PSF (the start) will have very + * similar second moments. The function pmSourcePSFClump searches a collection of + * sources with measured moments for a group with moments which are all very + * similar. The function returns a pmPSFClump structure, representing the + * centroid and size of the clump in the sigma_x, sigma_y second-moment plane. + * + * The goal is to identify and characterize the stellar clump within the + * sigma_x, sigma_y second-moment plane. To do this, an image is constructed to + * represent this plane. The units of sigma_x and sigma_y are in image pixels. A + * pixel in this analysis image represents 0.1 pixels in the input image. The + * dimensions of the image need only be 10 pixels. The peak pixel in this image + * (above a threshold of half of the image maximum) is found. The coordinates of + * this peak pixel represent the 2D mode of the sigma_x, sigma_y distribution. + * The sources with sigma_x, sigma_y within 0.2 pixels of this value are then + * * used to calculate the median and standard deviation of the sigma_x, sigma_y + * values. These resulting values are returned via the pmPSFClump structure. + * + * The return value indicates the success (TRUE) of the operation. + * + * XXX: Limit the S/N of the candidate sources (part of Metadata)? (TBD). + * XXX: Save the clump parameters on the Metadata (TBD) + * + */ +pmPSFClump pmSourcePSFClump( + psArray *source, ///< The input pmSource + psMetadata *metadata ///< Contains classification parameters +); + + +/** pmSourceRoughClass() + * + * Based on the specified data values, make a guess at the source + * classification. The sources are provides as a psArray of pmSource entries. + * Definable parameters needed to make the classification are provided to the + * routine with the psMetadata structure. The rules (in SDRS) refer to values which + * can be extracted from the metadata using the given keywords. Except as noted, + * the data type for these parameters are psF32. + * + */ +bool pmSourceRoughClass( + psArray *source, ///< The input pmSource + psMetadata *metadata, ///< Contains classification parameters + pmPSFClump clump ///< Statistics about the PSF clump +); + + +/** pmSourceMoments() + * + * Measure source moments for the given source, using the value of + * source.moments.sky provided as the local background value and the peak + * coordinates as the initial source location. The resulting moment values are + * applied to the source.moments entry, and the source is returned. The moments + * are measured within the given circular radius of the source.peak coordinates. + * The return value indicates the success (TRUE) of the operation. + * + */ +bool pmSourceMoments( + pmSource *source, ///< The input pmSource for which moments will be computed + float radius ///< Use a circle of pixels around the peak +); + + +// select the model used for this source +pmModel *pmSourceSelectModel (pmSource *source); + +/// @} +# endif /* PM_SOURCE_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSourceContour.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceContour.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceContour.c (revision 12167) @@ -0,0 +1,452 @@ +/** @file pmSourceContour.c + * + * Functions to measure the local sky and sky variance for sources on images + * + * @author GLG, MHPCC + * @author EAM, IfA: significant modifications. + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-10-24 22:55:05 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include "pslib.h" +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmSourceContour.h" + +/****************************************************************************** +findValue(source, level, row, col, dir): a private function which determines +the column coordinate of the model function which has the value "level". If +dir equals 0, then you loop leftwards from the peak pixel, otherwise, +rightwards. + +XXX: reverse order of row,col args? + +XXX: Input row/col are in image coords. + +XXX: The result is returned in image coords. +*****************************************************************************/ +# define LEFT false +# define RIGHT true + +// return the first coordinate at or below the threshold in the requested direction +static int findContourNeg( + psImage *image, + float threshold, + int x, + int y, + bool right) +{ + + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + + // We define variables incr and lastColumn so that we can use the same loop + // whether we are stepping leftwards, or rightwards. + + int incr; + int subCol; + int lastColumn; + if (right) { + incr = 1; + lastColumn = image->numCols - 1; + } else { + incr = -1; + lastColumn = 0; + } + + subCol = x; + + while (subCol != lastColumn) { + float value = image->data.F32[y][subCol]; + if (value <= threshold) { + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return (subCol); + } + subCol += incr; + } + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return (lastColumn); +} + +// return the last coordinate at or below the threshold in the requested direction +static int findContourPos( + psImage *image, + float threshold, + int x, + int y, + bool right, + int xEnd) +{ + + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + + // We define variables incr and lastColumn so that we can use the same loop + // whether we are stepping leftwards, or rightwards. + + int incr; + int subCol; + int lastColumn; + if (right) { + incr = 1; + lastColumn = PS_MIN (image->numCols - 1, xEnd); + } else { + incr = -1; + lastColumn = PS_MAX (0, xEnd); + } + + subCol = x; + while (subCol != lastColumn) { + float value = image->data.F32[y][subCol]; + if (value >= threshold) { + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + if (subCol == x) { + return (subCol); + } + return (subCol); + } + subCol += incr; + } + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return (lastColumn); +} + +/****************************************************************************** +findValue(source, level, row, col, dir): a private function which determines +the column coordinate of the model function which has the value "level". If +dir equals 0, then you loop leftwards from the peak pixel, otherwise, +rightwards. + +XXX: reverse order of row,col args? + +XXX: Input row/col are in image coords. + +XXX: The result is returned in image coords. +*****************************************************************************/ +static psF32 findValue(pmSource *source, + psF32 level, + psU32 row, + psU32 col, + psU32 dir) +{ + psTrace("psModules.objects", 4, "---- %s() begin ----\n", __func__); + // + // Convert coords to subImage space. + // + psU32 subRow = row - source->pixels->row0; + psU32 subCol = col - source->pixels->col0; + + // Ensure that the starting column is allowable. + if (!((0 <= subCol) && (subCol < source->pixels->numCols))) { + psError(PS_ERR_UNKNOWN, true, "Starting column outside subImage range"); + psTrace("psModules.objects", 4, "---- %s(NAN) end ----\n", __func__); + return(NAN); + } + if (!((0 <= subRow) && (subRow < source->pixels->numRows))) { + psTrace("psModules.objects", 4, "---- %s(NAN) end ----\n", __func__); + psError(PS_ERR_UNKNOWN, true, "Starting row outside subImage range"); + return(NAN); + } + + // XXX EAM : i changed this to match pmModelEval above, but see + // XXX EAM the note below in pmSourceContour + psF32 oldValue = pmModelEval(source->modelEXT, source->pixels, subCol, subRow); + if (oldValue == level) { + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return(((psF32) (subCol + source->pixels->col0))); + } + + // + // We define variables incr and lastColumn so that we can use the same loop + // whether we are stepping leftwards, or rightwards. + // + psS32 incr; + psS32 lastColumn; + if (dir == 0) { + incr = -1; + lastColumn = -1; + } else { + incr = 1; + lastColumn = source->pixels->numCols; + } + subCol+=incr; + + while (subCol != lastColumn) { + psF32 newValue = pmModelEval(source->modelEXT, source->pixels, subCol, subRow); + if (oldValue == level) { + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return((psF32) (subCol + source->pixels->col0)); + } + + if ((newValue <= level) && (level <= oldValue)) { + // This is simple linear interpolation. + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return( ((psF32) (subCol + source->pixels->col0)) + ((psF32) incr) * ((level - newValue) / (oldValue - newValue)) ); + } + + if ((oldValue <= level) && (level <= newValue)) { + // This is simple linear interpolation. + psTrace("psModules.objects", 4, "---- %s() end ----\n", __func__); + return( ((psF32) (subCol + source->pixels->col0)) + ((psF32) incr) * ((level - oldValue) / (newValue - oldValue)) ); + } + + subCol+=incr; + } + + psTrace("psModules.objects", 4, "---- %s(NAN) end ----\n", __func__); + return(NAN); +} + +/****************************************************************************** +new implementation of source contour function +*****************************************************************************/ +psArray *pmSourceContour (psImage *image, int xc, int yc, float threshold) +{ + + int xR, yR, x0, x1, x0s, x1s; + + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(image, false); + + int x = xc - image->col0; + int y = yc - image->row0; + + // the requested point must be within the contour + if (image->data.F32[y][x] < threshold) + return NULL; + + // Ensure that the starting column is allowable. + if (x < 0) + return NULL; + if (y < 0) + return NULL; + if (x >= image->numCols) + return NULL; + if (y >= image->numRows) + return NULL; + + // Allocate data for x/y pairs. + psVector *xVec = psVectorAllocEmpty(100, PS_TYPE_F32); + psVector *yVec = psVectorAllocEmpty(100, PS_TYPE_F32); + + // First row: find the left and right end-points + int Npt = 0; + + x0 = findContourNeg (image, threshold, x, y, LEFT); + x1 = findContourNeg (image, threshold, x, y, RIGHT); + xVec->data.F32[Npt + 0] = image->col0 + x0; + xVec->data.F32[Npt + 1] = image->col0 + x1; + yVec->data.F32[Npt + 0] = image->row0 + y; + yVec->data.F32[Npt + 1] = image->row0 + y; + Npt += 2; + + x0s = x0; + x1s = x1; + + // look for contour outline above row + xR = x0s; + yR = y + 1; + while (yR < image->numRows) { + if (image->data.F32[yR][xR] < threshold) { + x0 = findContourPos (image, threshold, xR, yR, RIGHT, x1); + if (x0 == x1) { + // fprintf (stderr, "top: %d (%d - %d)\n", yR, xR, x1); + goto pt1; + } + x1 = findContourNeg (image, threshold, x0, yR, RIGHT); + x0--; + } else { + x0 = findContourNeg (image, threshold, xR, yR, LEFT); + x1 = findContourNeg (image, threshold, xR, yR, RIGHT); + } + // fprintf (stderr, "pos: %d (%d - %d)\n", yR, x0, x1); + + xVec->data.F32[Npt + 0] = image->col0 + x0; + xVec->data.F32[Npt + 1] = image->col0 + x1; + yVec->data.F32[Npt + 0] = image->row0 + yR; + yVec->data.F32[Npt + 1] = image->row0 + yR; + Npt += 2; + + if (Npt >= xVec->nalloc - 1) { + psVectorRealloc (xVec, xVec->nalloc + 100); + psVectorRealloc (yVec, yVec->nalloc + 100); + } + yR ++; + xR = x0; + } + +pt1: + // look for contour outline below row + xR = x0s; + x1 = x1s; + yR = y - 1; + while (yR >= 0) { + if (image->data.F32[yR][xR] < threshold) { + x0 = findContourPos (image, threshold, xR, yR, RIGHT, x1); + if (x0 == x1) { + // fprintf (stderr, "top: %d (%d - %d)\n", yR, xR, x1); + goto pt2; + } + x1 = findContourNeg (image, threshold, x0, yR, RIGHT); + x0--; + } else { + x0 = findContourNeg (image, threshold, xR, yR, LEFT); + x1 = findContourNeg (image, threshold, xR, yR, RIGHT); + } + // fprintf (stderr, "neg: %d (%d - %d)\n", yR, x0, x1); + + xVec->data.F32[Npt + 0] = image->col0 + x0; + xVec->data.F32[Npt + 1] = image->col0 + x1; + yVec->data.F32[Npt + 0] = image->row0 + yR; + yVec->data.F32[Npt + 1] = image->row0 + yR; + Npt += 2; + + if (Npt >= xVec->nalloc - 1) { + psVectorRealloc (xVec, xVec->nalloc + 100); + psVectorRealloc (yVec, yVec->nalloc + 100); + } + yR --; + } +pt2: + xVec->n = Npt; + yVec->n = Npt; + + // fprintf (stderr, "done\n"); + psArray *tmpArray = psArrayAlloc(2); + + tmpArray->data[0] = (psPtr *) xVec; + tmpArray->data[1] = (psPtr *) yVec; + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmpArray); +} + +/****************************************************************************** + pmSourceContour(src, img, level, mode): For an input subImage, and model, this + routine returns a psArray of coordinates that evaluate to the specified level. + + XXX: Probably should remove the "image" argument. + XXX: What type should the output coordinate vectors consist of? col,row? + XXX: Why a pmArray output? + XXX: doex x,y correspond with col,row or row/col? + XXX: What is mode? + XXX: The top, bottom of the contour is not correctly determined. + XXX EAM : this function is using the model for the contour, but it should + be using only the image counts +*****************************************************************************/ +psArray *pmSourceContour_Crude(pmSource *source, + const psImage *image, + psF32 level) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_PTR_NON_NULL(image, false); + PS_ASSERT_PTR_NON_NULL(source->moments, false); + PS_ASSERT_PTR_NON_NULL(source->peak, false); + PS_ASSERT_PTR_NON_NULL(source->pixels, false); + PS_ASSERT_PTR_NON_NULL(source->modelEXT, false); + // XXX EAM : what is the purpose of modelPSF/modelEXT? + + // + // Allocate data for x/y pairs. + // + psVector *xVec = psVectorAlloc(2 * source->pixels->numRows, PS_TYPE_F32); + psVector *yVec = psVectorAlloc(2 * source->pixels->numRows, PS_TYPE_F32); + + // + // Start at the row with peak pixel, then decrement. + // + psS32 col = source->peak->x; + for (psS32 row = source->peak->y; row>= 0 ; row--) { + // XXX: yVec contain no real information. Do we really need it? + yVec->data.F32[row] = (psF32) (source->pixels->row0 + row); + yVec->data.F32[row+yVec->n] = (psF32) (source->pixels->row0 + row); + + // Starting at peak pixel, search leftwards for the column intercept. + psF32 leftIntercept = findValue(source, level, row, col, 0); + if (isnan(leftIntercept)) { + psError(PS_ERR_UNKNOWN, true, "Could not find contour edge (NAN)"); + psFree(xVec); + psFree(yVec); + psTrace("psModules.objects", 3, "---- %s(NULL) end ----\n", __func__); + return(NULL); + //psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not find contour edge (NAN)\n"); + } + xVec->data.F32[row] = ((psF32) source->pixels->col0) + leftIntercept; + + // Starting at peak pixel, search rightwards for the column intercept. + + psF32 rightIntercept = findValue(source, level, row, col, 1); + if (isnan(rightIntercept)) { + psError(PS_ERR_UNKNOWN, true, "Could not find contour edge (NAN)"); + psFree(xVec); + psFree(yVec); + psTrace("psModules.objects", 3, "---- %s(NULL) end ----\n", __func__); + return(NULL); + //psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not find contour edge (NAN)\n"); + } + psTrace("psModules.objects", 4, "The intercepts are (%.2f, %.2f)\n", leftIntercept, rightIntercept); + xVec->data.F32[row+xVec->n] = ((psF32) source->pixels->col0) + rightIntercept; + + // Set starting column for next row + col = (psS32) ((leftIntercept + rightIntercept) / 2.0); + } + // + // Start at the row (+1) with peak pixel, then increment. + // + col = source->peak->x; + for (psS32 row = 1 + source->peak->y; row < source->pixels->numRows ; row++) { + // XXX: yVec contain no real information. Do we really need it? + yVec->data.F32[row] = (psF32) (source->pixels->row0 + row); + yVec->data.F32[row+yVec->n] = (psF32) (source->pixels->row0 + row); + + // Starting at peak pixel, search leftwards for the column intercept. + psF32 leftIntercept = findValue(source, level, row, col, 0); + if (isnan(leftIntercept)) { + psError(PS_ERR_UNKNOWN, true, "Could not find contour edge (NAN)"); + psFree(xVec); + psFree(yVec); + psTrace("psModules.objects", 3, "---- %s(NULL) end ----\n", __func__); + return(NULL); + //psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not find contour edge (NAN)\n"); + } + xVec->data.F32[row] = ((psF32) source->pixels->col0) + leftIntercept; + + // Starting at peak pixel, search rightwards for the column intercept. + psF32 rightIntercept = findValue(source, level, row, col, 1); + if (isnan(rightIntercept)) { + psError(PS_ERR_UNKNOWN, true, "Could not find contour edge (NAN)"); + psFree(xVec); + psFree(yVec); + psTrace("psModules.objects", 3, "---- %s(NULL) end ----\n", __func__); + return(NULL); + //psLogMsg(__func__, PS_LOG_WARN, "WARNING: Could not find contour edge (NAN)\n"); + } + xVec->data.F32[row+xVec->n] = ((psF32) source->pixels->col0) + rightIntercept; + + // Set starting column for next row + col = (psS32) ((leftIntercept + rightIntercept) / 2.0); + } + + // + // Allocate an array for result, store coord vectors there. + // + psArray *tmpArray = psArrayAlloc(2); + + tmpArray->data[0] = (psPtr *) yVec; + tmpArray->data[1] = (psPtr *) xVec; + psTrace("psModules.objects", 3, "---- %s() end ----\n", __func__); + return(tmpArray); +} Index: /branches/rel-1-1/psModules/src/objects/pmSourceContour.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceContour.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceContour.h (revision 12167) @@ -0,0 +1,39 @@ +/* @file pmSourceContour.h + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_SOURCE_CONTOUR_H +# define PM_SOURCE_CONTOUR_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +psArray *pmSourceContour (psImage *image, int xc, int yc, float threshold); + + +/** pmSourceContour() + * + * Find points in a contour for the given source at the given level. If type + * is PM_CONTOUR_CRUDE, the contour is found by starting at the source peak, + * running along each pixel row until the level is crossed, then interpolating to + * the level coordinate for that row. This is done for each row, with the + * starting point determined by the midpoint of the previous row, until the + * starting point has a value below the contour level. The returned contour + * consists of two vectors giving the x and y coordinates of the contour levels. + * This function may be used as part of the model guess inputs. Other contour + * types may be specified in the future for more refined contours (TBD) + * + */ +psArray *pmSourceContour_Crude( + pmSource *source, ///< The input pmSource + const psImage *image, ///< The input image (float) (this arg should be removed) + float level ///< The level of the contour +); + +/// @} +# endif /* PM_SOURCE_PHOTOMETRY_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.c (revision 12167) @@ -0,0 +1,562 @@ +/** @file pmSourceFitModel.c + * + * fit single source models to image pixels + * + * @author EAM, IfA + * @author GLG, MHPCC + * + * @version $Revision: 1.19 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceFitModel.h" + +// save as static values so they may be set externally +static psF32 PM_SOURCE_FIT_MODEL_NUM_ITERATIONS = 15; +static psF32 PM_SOURCE_FIT_MODEL_TOLERANCE = 0.1; +static psF32 PM_SOURCE_FIT_MODEL_WEIGHT = 1.0; +static bool PM_SOURCE_FIT_MODEL_PIX_WEIGHTS = true; + +bool pmSourceFitModelInit (float nIter, float tol, float weight, bool poissonErrors) +{ + + PM_SOURCE_FIT_MODEL_NUM_ITERATIONS = nIter; + PM_SOURCE_FIT_MODEL_TOLERANCE = tol; + PM_SOURCE_FIT_MODEL_WEIGHT = weight; + PM_SOURCE_FIT_MODEL_PIX_WEIGHTS = poissonErrors; + + return true; +} + +bool pmSourceFitModel (pmSource *source, + pmModel *model, + pmSourceFitMode mode) +{ + psTrace("psModules.objects", 5, "---- %s begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_PTR_NON_NULL(source->pixels, false); + PS_ASSERT_PTR_NON_NULL(source->mask, false); + PS_ASSERT_PTR_NON_NULL(source->weight, false); + + psBool fitStatus = true; + psBool onPic = true; + psBool rc = true; + + // maximum number of valid pixels + psS32 nPix = source->pixels->numRows * source->pixels->numCols; + + // arrays to hold the data to be fitted + psArray *x = psArrayAllocEmpty(nPix); + psVector *y = psVectorAllocEmpty(nPix, PS_TYPE_F32); + psVector *yErr = psVectorAllocEmpty(nPix, PS_TYPE_F32); + + // fill in the coordinate and value entries + nPix = 0; + for (psS32 i = 0; i < source->pixels->numRows; i++) { + for (psS32 j = 0; j < source->pixels->numCols; j++) { + // skip masked points + if (source->mask->data.U8[i][j]) { + continue; + } + // skip zero-weight points + if (source->weight->data.F32[i][j] == 0) { + continue; + } + + psVector *coord = psVectorAlloc(2, PS_TYPE_F32); + + // Convert i/j to image space: + coord->data.F32[0] = (psF32) (j + source->pixels->col0); + coord->data.F32[1] = (psF32) (i + source->pixels->row0); + x->data[nPix] = (psPtr *) coord; + y->data.F32[nPix] = source->pixels->data.F32[i][j]; + + // psMinimizeLMChi2 takes wt = 1/dY^2. suggestion from RHL is to use the local sky + // as weight to avoid the bias from systematic errors here we would just use the + // source sky variance + if (PM_SOURCE_FIT_MODEL_PIX_WEIGHTS) { + yErr->data.F32[nPix] = 1.0 / source->weight->data.F32[i][j]; + } else { + yErr->data.F32[nPix] = 1.0 / PM_SOURCE_FIT_MODEL_WEIGHT; + } + nPix++; + } + } + x->n = nPix; + y->n = nPix; + yErr->n = nPix; + + psVector *params = model->params; + psVector *dparams = model->dparams; + + pmModelFunc modelFunc = pmModelFunc_GetFunction (model->type); + if (!modelFunc) + psAbort("invalid model function"); + pmModelLimits checkLimits = pmModelLimits_GetFunction (model->type); + if (!checkLimits) + psAbort("invalid model limits function"); + + // create the minimization constraints + psMinConstraint *constraint = psMinConstraintAlloc(); + constraint->paramMask = psVectorAlloc (params->n, PS_TYPE_U8); + constraint->checkLimits = checkLimits; + + // set parameter mask based on fitting mode + int nParams = 0; + switch (mode) { + case PM_SOURCE_FIT_NORM: + // NORM-only model fits only source normalization (Io) + nParams = 1; + psVectorInit (constraint->paramMask, 1); + constraint->paramMask->data.U8[PM_PAR_I0] = 0; + break; + case PM_SOURCE_FIT_PSF: + // PSF model only fits x,y,Io + nParams = 3; + psVectorInit (constraint->paramMask, 1); + constraint->paramMask->data.U8[PM_PAR_I0] = 0; + constraint->paramMask->data.U8[PM_PAR_XPOS] = 0; + constraint->paramMask->data.U8[PM_PAR_YPOS] = 0; + break; + case PM_SOURCE_FIT_EXT: + // EXT model fits all params (except sky) + nParams = params->n - 1; + psVectorInit (constraint->paramMask, 0); + constraint->paramMask->data.U8[PM_PAR_SKY] = 1; + break; + default: + psAbort("invalid fitting mode"); + } + // force the floating parameters to fall within the contraint ranges + for (int i = 0; i < params->n; i++) { + checkLimits (PS_MINIMIZE_PARAM_MIN, i, params->data.F32, NULL); + checkLimits (PS_MINIMIZE_PARAM_MAX, i, params->data.F32, NULL); + } + + if (nPix < nParams + 1) { + psTrace ("psModules.objects", 4, "insufficient valid pixels\n"); + model->status = PM_MODEL_BADARGS; + psFree (x); + psFree (y); + psFree (yErr); + psFree (constraint); + return(false); + } + + psMinimization *myMin = psMinimizationAlloc (PM_SOURCE_FIT_MODEL_NUM_ITERATIONS, PM_SOURCE_FIT_MODEL_TOLERANCE); + + psImage *covar = psImageAlloc (params->n, params->n, PS_TYPE_F32); + + fitStatus = psMinimizeLMChi2(myMin, covar, params, constraint, x, y, yErr, modelFunc); + for (int i = 0; i < dparams->n; i++) { + if (psTraceGetLevel("psModules.objects") >= 4) { + fprintf (stderr, "%f ", params->data.F32[i]); + } + if ((constraint->paramMask != NULL) && constraint->paramMask->data.U8[i]) + continue; + dparams->data.F32[i] = sqrt(covar->data.F32[i][i]); + } + psTrace ("psModules.objects", 4, "niter: %d, chisq: %f", myMin->iter, myMin->value); + + // save the resulting chisq, nDOF, nIter + model->chisq = myMin->value; + model->nIter = myMin->iter; + model->nDOF = y->n - nParams; + + // get the Gauss-Newton distance for fixed model parameters + // hold the fitted parameters fixed; mask sky which is not fitted at all + if (constraint->paramMask != NULL) { + psVector *delta = psVectorAlloc (params->n, PS_TYPE_F32); + psVector *altmask = psVectorAlloc (params->n, PS_TYPE_U8); + altmask->data.U8[0] = 1; + for (int i = 1; i < dparams->n; i++) { + altmask->data.U8[i] = (constraint->paramMask->data.U8[i]) ? 0 : 1; + } + psMinimizeGaussNewtonDelta(delta, params, altmask, x, y, yErr, modelFunc); + for (int i = 0; i < dparams->n; i++) { + if (!constraint->paramMask->data.U8[i]) + continue; + // note that delta is the value *subtracted* from the parameter + // to get the new guess. for dparams to represent the direction + // of motion, we need to take -delta + dparams->data.F32[i] = -delta->data.F32[i]; + } + psFree (delta); + psFree (altmask); + } + + // set the model success or failure status + if (!fitStatus) { + model->status = PM_MODEL_NONCONVERGE; + } else { + model->status = PM_MODEL_SUCCESS; + } + + // models can go insane: reject these + onPic &= (params->data.F32[PM_PAR_XPOS] >= source->pixels->col0); + onPic &= (params->data.F32[PM_PAR_XPOS] < source->pixels->col0 + source->pixels->numCols); + onPic &= (params->data.F32[PM_PAR_YPOS] >= source->pixels->row0); + onPic &= (params->data.F32[PM_PAR_YPOS] < source->pixels->row0 + source->pixels->numRows); + if (!onPic) { + model->status = PM_MODEL_OFFIMAGE; + } + + source->mode |= PM_SOURCE_MODE_FITTED; + + psFree(x); + psFree(y); + psFree(yErr); + psFree(myMin); + psFree(covar); + psFree(constraint); + + rc = (onPic && fitStatus); + psTrace("psModules.objects", 5, "---- %s(%d) end ----\n", __func__, rc); + return(rc); +} + +/********************* Source Model Set Functions ***************************/ + +// these static variables are used by one pass of pmSourceFitSet to store +// data for a model set. If we are going to make psphot thread-safe, these +// will have to go in a structure of their own or be allocated once per thread +// sky, p1.1, p1.2, p1.3,... p1.n, p2.1, p2.2, +// nPar = nSrc*(nOnePar - 1) + 1 +static pmModelFunc oneModelFunc; +static pmModelLimits oneCheckLimits; +static psVector *onePar; +static psVector *oneDeriv; +static int nOnePar; + +bool pmSourceFitSetInit (pmModelType type) +{ + + oneModelFunc = pmModelFunc_GetFunction (type); + oneCheckLimits = pmModelLimits_GetFunction (type); + nOnePar = pmModelParameterCount (type); + + onePar = psVectorAlloc (nOnePar, PS_DATA_F32); + oneDeriv = psVectorAlloc (nOnePar, PS_DATA_F32); + + return true; +} + +void pmSourceFitSetClear (void) +{ + + psFree (onePar); + psFree (oneDeriv); + return; +} + +bool pmSourceFitSet_CheckLimits (psMinConstraintMode mode, int nParam, float *params, float *betas) +{ + // convert the value of nParam into corresponding single model parameter entry + // convert params into corresponding single model parameter pointer + + int nParamSingle = (nParam - 1) % (nOnePar - 1) + 1; + float *paramSingle = params + nParam - nParamSingle; + float *betaSingle = betas + nParam - nParamSingle; + bool status = oneCheckLimits (mode, nParamSingle, paramSingle, betaSingle); + return status; +} + +psF32 pmSourceFitSet_Function(psVector *deriv, + const psVector *params, + const psVector *x) +{ + + psF32 value; + psF32 model; + + psF32 *PAR = onePar->data.F32; + psF32 *dPAR = oneDeriv->data.F32; + + psF32 *pars = params->data.F32; + psF32 *dpars = (deriv == NULL) ? NULL : deriv->data.F32; + + int nSrc = (params->n - 1) / (nOnePar - 1); + + PAR[0] = model = pars[0]; + for (int i = 0; i < nSrc; i++) { + int nOff = i*nOnePar - i; + for (int n = 1; n < nOnePar; n++) { + PAR[n] = pars[nOff + n]; + } + if (deriv == NULL) { + value = oneModelFunc (NULL, onePar, x); + } else { + value = oneModelFunc (oneDeriv, onePar, x); + for (int n = 1; n < nOnePar; n++) { + dpars[nOff + n] = dPAR[n]; + } + } + model += value; + } + if (deriv != NULL) { + dpars[0] = dPAR[0]*2.0; + } + return (model); +} + +/* +i: 0 1 2 +n: 1 2 3 4 5 6 1 2 3 4 5 6 1 2 3 4 5 6 +i*6 + n: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 +*/ + +bool pmSourceFitSet (pmSource *source, + psArray *modelSet, + pmSourceFitMode mode) +{ + psTrace("psModules.objects", 3, "---- %s begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_PTR_NON_NULL(source->pixels, false); + PS_ASSERT_PTR_NON_NULL(source->mask, false); + PS_ASSERT_PTR_NON_NULL(source->weight, false); + + psBool fitStatus = true; + psBool onPic = true; + psBool rc = true; + + // maximum number of valid pixels + psS32 nPix = source->pixels->numRows * source->pixels->numCols; + + // construct the coordinate and value entries + psArray *x = psArrayAllocEmpty(nPix); + psVector *y = psVectorAllocEmpty(nPix, PS_TYPE_F32); + psVector *yErr = psVectorAllocEmpty(nPix, PS_TYPE_F32); + + // fill in the coordinate and value entries + nPix = 0; + for (psS32 i = 0; i < source->pixels->numRows; i++) { + for (psS32 j = 0; j < source->pixels->numCols; j++) { + // skip masked points + if (source->mask->data.U8[i][j]) { + continue; + } + // skip zero-weight points + if (source->weight->data.F32[i][j] == 0) { + continue; + } + psVector *coord = psVectorAlloc(2, PS_TYPE_F32); + + // Convert i/j to image space: + coord->data.F32[0] = (psF32) (j + source->pixels->col0); + coord->data.F32[1] = (psF32) (i + source->pixels->row0); + x->data[nPix] = (psPtr *) coord; + y->data.F32[nPix] = source->pixels->data.F32[i][j]; + + // psMinimizeLMChi2 takes wt = 1/dY^2. suggestion from RHL is to use the local sky + // as weight to avoid the bias from systematic errors here we would just use the + // source sky variance + if (PM_SOURCE_FIT_MODEL_PIX_WEIGHTS) { + yErr->data.F32[nPix] = 1.0 / source->weight->data.F32[i][j]; + } else { + yErr->data.F32[nPix] = 1.0 / PM_SOURCE_FIT_MODEL_WEIGHT; + } + nPix++; + } + } + x->n = nPix; + y->n = nPix; + yErr->n = nPix; + + // base values on first model (all models must be identical) + pmModel *model = modelSet->data[0]; + + // determine number of model parameters + int nSrc = modelSet->n; + int nPar = model->params->n - 1; // number of object parameters (excluding sky) + + // define parameter vectors for source set + psVector *params = psVectorAlloc (nSrc*nPar + 1, PS_TYPE_F32); + psVector *dparams = psVectorAlloc (nSrc*nPar + 1, PS_TYPE_F32); + + // set the static variables + pmSourceFitSetInit (model->type); + + // create the minimization constraints + psMinConstraint *constraint = psMinConstraintAlloc(); + constraint->paramMask = psVectorAlloc (nSrc*nPar + 1, PS_TYPE_U8); + constraint->checkLimits = pmSourceFitSet_CheckLimits; + + // set the parameter guesses for the multiple models + // first the value for the single sky parameter + params->data.F32[0] = model->params->data.F32[0]; + + // next, the values for the source parameters + for (int i = 0; i < nSrc; i++) { + model = modelSet->data[i]; + for (int n = 1; n < nPar + 1; n++) { + params->data.F32[i*nPar + n] = model->params->data.F32[n]; + } + } + + if (psTraceGetLevel("psModules.objects") >= 5) { + for (int i = 0; i < params->n; i++) { + fprintf (stderr, "%d %f %d\n", i, params->data.F32[i], constraint->paramMask->data.U8[i]); + } + } + + // set the parameter masks based on the fitting mode + int nParams = 0; + switch (mode) { + case PM_SOURCE_FIT_NORM: + // NORM-only model fits only source normalization (Io) + nParams = nSrc; + psVectorInit (constraint->paramMask, 1); + for (int i = 0; i < nSrc; i++) { + constraint->paramMask->data.U8[1 + i*nPar] = 0; + } + break; + case PM_SOURCE_FIT_PSF: + // PSF model only fits x,y,Io + nParams = 3*nSrc; + psVectorInit (constraint->paramMask, 1); + for (int i = 0; i < nSrc; i++) { + constraint->paramMask->data.U8[1 + i*nPar] = 0; + constraint->paramMask->data.U8[2 + i*nPar] = 0; + constraint->paramMask->data.U8[3 + i*nPar] = 0; + } + break; + case PM_SOURCE_FIT_EXT: + // EXT model fits all params (except sky) + nParams = nPar*nSrc; + psVectorInit (constraint->paramMask, 0); + constraint->paramMask->data.U8[0] = 1; + break; + default: + psAbort("invalid fitting mode"); + } + + // force the floating parameters to fall within the contraint ranges + for (int i = 0; i < params->n; i++) { + pmSourceFitSet_CheckLimits (PS_MINIMIZE_PARAM_MIN, i, params->data.F32, NULL); + pmSourceFitSet_CheckLimits (PS_MINIMIZE_PARAM_MAX, i, params->data.F32, NULL); + } + + if (nPix < nParams + 1) { + psTrace (__func__, 4, "insufficient valid pixels\n"); + psTrace("psModules.objects", 3, "---- %s() end : fail pixels ----\n", __func__); + model->status = PM_MODEL_BADARGS; + psFree (x); + psFree (y); + psFree (yErr); + psFree (params); + psFree (dparams); + psFree(constraint); + pmSourceFitSetClear (); + return(false); + } + + psMinimization *myMin = psMinimizationAlloc (PM_SOURCE_FIT_MODEL_NUM_ITERATIONS, PM_SOURCE_FIT_MODEL_TOLERANCE); + + psImage *covar = psImageAlloc (params->n, params->n, PS_TYPE_F32); + + fitStatus = psMinimizeLMChi2(myMin, covar, params, constraint, x, y, yErr, pmSourceFitSet_Function); + if (!fitStatus) { + psTrace("psModules.objects", 4, "Failed to fit model (%d)\n", nSrc); + } + + // parameter errors from the covariance matrix + for (int i = 0; i < dparams->n; i++) { + if ((constraint->paramMask != NULL) && constraint->paramMask->data.U8[i]) + continue; + dparams->data.F32[i] = sqrt(covar->data.F32[i][i]); + } + + // get the Gauss-Newton distance for fixed model parameters + if (constraint->paramMask != NULL) { + psVector *delta = psVectorAlloc (params->n, PS_TYPE_F32); + psVector *altmask = psVectorAlloc (params->n, PS_TYPE_U8); + altmask->data.U8[0] = 1; + for (int i = 1; i < dparams->n; i++) { + altmask->data.U8[i] = (constraint->paramMask->data.U8[i]) ? 0 : 1; + } + psMinimizeGaussNewtonDelta(delta, params, altmask, x, y, yErr, pmSourceFitSet_Function); + for (int i = 0; i < dparams->n; i++) { + if (!constraint->paramMask->data.U8[i]) + continue; + // note that delta is the value *subtracted* from the parameter + // to get the new guess. for dparams to represent the direction + // of motion, we need to take -delta + dparams->data.F32[i] = -delta->data.F32[i]; + } + psFree (delta); + psFree (altmask); + } + + // assign back the parameters to the models + for (int i = 0; i < nSrc; i++) { + model = modelSet->data[i]; + model->params->data.F32[0] = params->data.F32[0]; + for (int n = 1; n < nPar + 1; n++) { + if (psTraceGetLevel("psModules.objects") >= 4) { + fprintf (stderr, "%f ", params->data.F32[i*nPar + n]); + } + model->params->data.F32[n] = params->data.F32[i*nPar + n]; + model->dparams->data.F32[n] = dparams->data.F32[i*nPar + n]; + } + psTrace ("psModules.objects", 4, " src %d", i); + + // save the resulting chisq, nDOF, nIter + // these are not unique for any one source + model->chisq = myMin->value; + model->nIter = myMin->iter; + model->nDOF = y->n - nParams; + + // set the model success or failure status + model->status = fitStatus ? PM_MODEL_SUCCESS : PM_MODEL_NONCONVERGE; + + // models can go insane: reject these + onPic &= (model->params->data.F32[PM_PAR_XPOS] >= source->pixels->col0); + onPic &= (model->params->data.F32[PM_PAR_XPOS] < source->pixels->col0 + source->pixels->numCols); + onPic &= (model->params->data.F32[PM_PAR_XPOS] >= source->pixels->row0); + onPic &= (model->params->data.F32[PM_PAR_XPOS] < source->pixels->row0 + source->pixels->numRows); + if (!onPic) { + model->status = PM_MODEL_OFFIMAGE; + } + } + psTrace ("psModules.objects", 4, "niter: %d, chisq: %f", myMin->iter, myMin->value); + + source->mode |= PM_SOURCE_MODE_FITTED; + + psFree(x); + psFree(y); + psFree(yErr); + psFree(myMin); + psFree(covar); + psFree(constraint); + psFree(params); + psFree(dparams); + + // free static memory used by pmSourceFitSet + pmSourceFitSetClear (); + + rc = (onPic && fitStatus); + psTrace (__func__, 5, "onPic: %d, fitStatus: %d, nIter: %d, chisq: %f, nDof: %d\n", onPic, fitStatus, model->nIter, model->chisq, model->nDOF); + psTrace("psModules.objects", 5, "---- %s end (%d) ----\n", __func__, rc); + return(rc); +} + Index: /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceFitModel.h (revision 12167) @@ -0,0 +1,75 @@ +/* @file pmSourceFitModel.h + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_SOURCE_FIT_MODEL_H +# define PM_SOURCE_FIT_MODEL_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +typedef enum { + PM_SOURCE_FIT_NORM, + PM_SOURCE_FIT_PSF, + PM_SOURCE_FIT_EXT, + PM_SOURCE_FIT_PSF_AND_SKY, + PM_SOURCE_FIT_EXT_AND_SKY +} pmSourceFitMode; + +bool pmSourceFitModelInit( + float nIter, ///< max number of allowed iterations + float tol, ///< convergence criterion + float weight, ///< use this weight for constant-weight fits + bool poissonErrors // use poisson errors for fits? +); + +/** pmSourceFitModel() + * + * Fit the requested model to the specified source. The starting guess for the model is given + * by the input source.model parameter values. The pixels of interest are specified by the + * source.pixels and source.mask entries. This function calls psMinimizeLMChi2() on the image + * data. The function returns TRUE on success or FALSE on failure. + * + */ +bool pmSourceFitModel( + pmSource *source, ///< The input pmSource + pmModel *model, ///< model to be fitted + pmSourceFitMode mode ///< define parameters to be fitted +); + + +// initialize data for a group of object models +bool pmSourceFitSetInit (pmModelType type); + +// clear data for a group of object models +void pmSourceFitSetClear (void); + +// function used to set limits for a group of models +bool pmSourceFitSet_CheckLimits (psMinConstraintMode mode, int nParam, float *params, float *betas); + +// function used to fit a group of object models +psF32 pmSourceFitSet_Function(psVector *deriv, + const psVector *params, + const psVector *x); + +/** pmSourceFitSet() + * + * Fit the requested model to the specified source. The starting guess for the model is given + * by the input source.model parameter values. The pixels of interest are specified by the + * source.pixels and source.mask entries. This function calls psMinimizeLMChi2() on the image + * data. The function returns TRUE on success or FALSE on failure. + * + */ +bool pmSourceFitSet( + pmSource *source, ///< The input pmSource + psArray *modelSet, ///< model to be fitted + pmSourceFitMode mode ///< define parameters to be fitted +); + +/// @} +# endif /* PM_SOURCE_FIT_MODEL_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO.c (revision 12167) @@ -0,0 +1,515 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.21 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +// translations between psphot object types and dophot object types +int pmSourceDophotType (pmSource *source) +{ + switch (source->type) { + + case PM_SOURCE_TYPE_DEFECT: + case PM_SOURCE_TYPE_SATURATED: + return (8); + + case PM_SOURCE_TYPE_STAR: + if (source->mode & PM_SOURCE_MODE_SATSTAR) + return (10); + if (source->mode & PM_SOURCE_MODE_POOR) + return (7); + if (source->mode & PM_SOURCE_MODE_FAIL) + return (4); + return (1); + + case PM_SOURCE_TYPE_EXTENDED: + return (2); + + default: + return (0); + } + return (0); +} + +// Given a FITS file pointer, write the table of object data +bool pmFPAviewWriteObjects (const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + if (!pmFPAWriteObjects (fpa, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write objects from fpa"); + return false; + } + return true; + } + + if (view->chip >= fpa->chips->n) { + psError(PS_ERR_UNKNOWN, false, "Writing chip == %d (>= chips->n == %ld)", view->chip, fpa->chips->n); + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + if (!pmChipWriteObjects (chip, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write objects from chip"); + return false; + } + return true; + } + + if (view->cell >= chip->cells->n) { + psError(PS_ERR_UNKNOWN, false, "Writing cell == %d (>= cells->n == %ld)", + view->cell, chip->cells->n); + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + if (!pmCellWriteObjects (cell, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write objects from cell"); + return false; + } + + return true; + } + + if (view->readout >= cell->readouts->n) { + psError(PS_ERR_UNKNOWN, false, "Writing readout == %d (>= readouts->n == %ld)", + view->readout, cell->readouts->n); + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + if (!pmReadoutWriteObjects (readout, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write objects from readout %d", view->readout); + return false; + } + + return true; +} + +// read in all chip-level Objects files for this FPA +bool pmFPAWriteObjects (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < fpa->chips->n; i++) { + + pmChip *chip = fpa->chips->data[i]; + if (!pmChipWriteObjects (chip, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write %dth chip", i); + return false; + } + } + return true; +} + +// read in all cell-level Objects files for this chip +bool pmChipWriteObjects (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < chip->cells->n; i++) { + + pmCell *cell = chip->cells->data[i]; + if (!pmCellWriteObjects (cell, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write %dth cell", i); + return false; + } + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmCellWriteObjects (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + for (int i = 0; i < cell->readouts->n; i++) { + + pmReadout *readout = cell->readouts->data[i]; + if (!pmReadoutWriteObjects (readout, view, file, config)) { + psError(PS_ERR_IO, false, "Failed to write %dth readout", i); + return false; + } + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmReadoutWriteObjects (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + bool status; + char *exttype; + char *realname; + char *filename; + char *dataname; + char *headname; + pmHDU *hdu; + pmHDU *phu; + psMetadata *updates; + psMetadata *outhead; + + psArray *sources = psMetadataLookupPtr (&status, readout->analysis, "PSPHOT.SOURCES"); + if (sources == NULL) + return false; + + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + + switch (file->type) { + case PM_FPA_FILE_RAW: + filename = pmFPAfileNameFromRule (file->filerule, file, view); + realname = pmConfigConvertFilename (filename, config, create); + pmSourcesWriteRAW (sources, realname); + psFree (realname); + psFree (filename); + break; + + case PM_FPA_FILE_OBJ: + filename = pmFPAfileNameFromRule (file->filerule, file, view); + realname = pmConfigConvertFilename (filename, config, create); + pmSourcesWriteOBJ (sources, realname); + psFree (realname); + psFree (filename); + break; + + case PM_FPA_FILE_SX: + filename = pmFPAfileNameFromRule (file->filerule, file, view); + realname = pmConfigConvertFilename (filename, config, create); + pmSourcesWriteSX (sources, realname); + psFree (realname); + psFree (filename); + break; + + case PM_FPA_FILE_CMP: + // a SPLIT format : only one header and object table per file + hdu = pmFPAviewThisHDU (view, file->fpa); + filename = pmFPAfileNameFromRule (file->filerule, file, view); + realname = pmConfigConvertFilename (filename, config, create); + + // copy the header to an output header, add the output header data + outhead = psMetadataCopy (NULL, hdu->header); + + // copy over the entries saved by PSPHOT + updates = psMetadataLookupPtr (NULL, readout->analysis, "PSPHOT.HEADER"); + if (updates) { + psMetadataCopy (outhead, updates); + } + + // copy over the entries saved by PSASTRO + updates = psMetadataLookupPtr (NULL, readout->analysis, "PSASTRO.HEADER"); + if (updates) { + psMetadataCopy (outhead, updates); + } + + bool status = pmSourcesWriteCMP (sources, realname, outhead); + psFree (outhead); + psFree (realname); + psFree (filename); + + if (!status) { + psError(PS_ERR_IO, false, "Failed to write CMP file\n"); + return false; + } + break; + + case PM_FPA_FILE_CMF: + // write a PHU? (only if input image is MEF) + // write a header? (only if this is the first readout for cell) + // note that the file->header is set to track the last hdu->header written + // write the data? (always?) + + // get the current header + hdu = pmFPAviewThisHDU (view, file->fpa); + + // if file does not yet have a PHU, attempt to write one to disk + // we only need a PHU if chips->n > 1 and file->fileLevel == FPA + // otherwise, the chip header fills the PHU location + if ((file->fileLevel == PM_FPA_LEVEL_FPA) && (file->fpa->chips->n > 1) && !file->phu) { + + // find the FPA phu + phu = pmFPAviewThisPHU (view, file->fpa); + + // if there is no PHU, this is a single header+image (extension-less) file + // if there is a PHU, write it out as a 'blank' + outhead = psMetadataAlloc(); + if (phu) { + psMetadataCopy (outhead, phu->header); + } else { + psMetadata *fileMD = psMetadataLookupMetadata (NULL, file->format, "FILE"); + psMetadataCopy (outhead, fileMD); + } + + // if we have mosaic-level astrometry information, add it here: + updates = psMetadataLookupPtr (&status, file->fpa->analysis, "PSASTRO.HEADER"); + if (updates) { + psMetadataCopy (outhead, updates); + } + + psMetadataAddBool (outhead, PS_LIST_TAIL, "EXTEND", PS_META_REPLACE, "this file has extensions", true); + psFitsWriteBlank (file->fits, outhead, ""); + file->phu = true; + psTrace ("pmFPAfile", 5, "wrote phu %s (type: %d)\n", file->filename, file->type); + psFree (outhead); + } + + // EXTNAME values used to for table data and image header segments + dataname = pmFPAfileNameFromRule (file->extrule, file, view); + headname = pmFPAfileNameFromRule (file->extxtra, file, view); + + // this header block is new, write it to disk + if (hdu->header != file->header) { + outhead = psMetadataCopy (NULL, hdu->header); + + // add EXTNAME, EXTHEAD, EXTTYPE to header + // psMetadataAddStr (outhead, PS_LIST_TAIL, "EXTNAME", PS_META_REPLACE, "extension name", headname); + psMetadataAddStr (outhead, PS_LIST_TAIL, "EXTDATA", PS_META_REPLACE, "name of table extension", dataname); + psMetadataAddStr (outhead, PS_LIST_TAIL, "EXTTYPE", PS_META_REPLACE, "extension type", "IMAGE"); + if (!file->phu) { + // this hdu->header acts as the PHU: set EXTEND to be true + psMetadataAddBool (outhead, PS_LIST_TAIL, "EXTEND", PS_META_REPLACE, "this file has extensions", true); + } + + // save psphot and psastro metadata in the image (not table) header + updates = psMetadataLookupPtr (&status, readout->analysis, "PSPHOT.HEADER"); + if (updates) { + psMetadataCopy (outhead, updates); + } + + updates = psMetadataLookupPtr (&status, readout->analysis, "PSASTRO.HEADER"); + if (updates) { + psMetadataCopy (outhead, updates); + } + + psFitsWriteBlank (file->fits, outhead, headname); + psTrace ("pmFPAfile", 5, "wrote ext head %s (type: %d)\n", file->filename, file->type); + file->header = hdu->header; + psFree (outhead); + } + + // create a header to hold the output data + outhead = psMetadataAlloc (); + + exttype = psStringCopy ("SMPDATA"); // XXX derive this from the recipes + psMetadataAddStr (outhead, PS_LIST_TAIL, "EXTHEAD", PS_META_REPLACE, "name of image extension w/", headname); + psMetadataAddStr (outhead, PS_LIST_TAIL, "EXTTYPE", PS_META_REPLACE, "extension type", exttype); + psFree (exttype); + + if (!pmSourcesWriteCMF (file->fits, sources, outhead, dataname)) { + psError(PS_ERR_IO, false, "writing CMF data to %s\n", file->filename); + psFree (headname); + psFree (dataname); + psFree (outhead); + return false; + } + + psTrace ("pmFPAfile", 5, "wrote ext data %s (type: %d)\n", file->filename, file->type); + + psFree (headname); + psFree (dataname); + psFree (outhead); + break; + + default: + fprintf (stderr, "warning: type mismatch\n"); + break; + } + return true; +} +// a MEF CMF file has: PHU, CELL-HEAD, TABLE, CELL-HEAD, TABLE, TABLE, TABLE... + +// Given a FITS file pointer, read the table of object data +bool pmFPAviewReadObjects (const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAReadObjects (fpa, view, file, config); + return true; + } + + if (view->chip >= fpa->chips->n) { + return false; + } + pmChip *chip = fpa->chips->data[view->chip]; + + if (view->cell == -1) { + pmChipReadObjects (chip, view, file, config); + return true; + } + + if (view->cell >= chip->cells->n) { + return false; + } + pmCell *cell = chip->cells->data[view->cell]; + + if (view->readout == -1) { + pmCellReadObjects (cell, view, file, config); + return true; + } + + if (view->readout >= cell->readouts->n) { + return false; + } + pmReadout *readout = cell->readouts->data[view->readout]; + + pmReadoutReadObjects (readout, view, file, config); + return true; +} + +// read in all chip-level Objects files for this FPA +bool pmFPAReadObjects (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + pmChipReadObjects (chip, view, file, config); + } + return true; +} + +// read in all cell-level Objects files for this chip +bool pmChipReadObjects (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + for (int i = 0; i < chip->cells->n; i++) { + pmCell *cell = chip->cells->data[i]; + pmCellReadObjects (cell, view, file, config); + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmCellReadObjects (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + // multiple readout mode is not yet defined for CMP or CMF files + // if they have not been allocated, allocate a single readout + if (!cell->readouts || !cell->readouts->n) { + pmReadout *readout = pmReadoutAlloc (cell); + psFree (readout); + } + + for (int i = 0; i < cell->readouts->n; i++) { + pmReadout *readout = cell->readouts->data[i]; + pmReadoutReadObjects (readout, view, file, config); + cell->data_exists = true; + } + return true; +} + +// read in all readout-level Objects files for this cell +bool pmReadoutReadObjects (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + + bool status; + psArray *sources = NULL; + pmHDU *hdu; + + switch (file->type) { + case PM_FPA_FILE_OBJ: + fprintf (stderr, "warning: OBJ is not supported as an input object format\n"); + break; + + case PM_FPA_FILE_SX: + fprintf (stderr, "warning: SX is not supported as an input object format\n"); + break; + + case PM_FPA_FILE_CMP: + // a SPLIT format : only one header and object table per file + + // read in header, if not yet loaded + hdu = pmFPAviewThisHDU (view, file->fpa); + if (file->filename) + psFree (file->filename); + file->filename = pmFPAfileNameFromRule (file->filerule, file, view); + + // indirect filenames + if (!strcasecmp (file->filename, "@FILES")) { + psFree (file->filename); + char *extra = pmFPAfileNameFromRule (file->filextra, file, view); + file->filename = psMetadataLookupStr (&status, file->names, extra); + psFree (extra); + if (file->filename == NULL) + return false; + // psMetadataLookupStr just returns a view, file->filename must be protected + psMemIncrRefCounter (file->filename); + } + + bool create = file->mode == PM_FPA_MODE_WRITE ? true : false; + psString realname = pmConfigConvertFilename (file->filename, config, create); + + file->fits = psFitsOpen (realname, "r"); + if (hdu->header != NULL) { + psFree (hdu->header); + } + hdu->header = psFitsReadHeader (NULL, file->fits); + psFitsClose (file->fits); + file->fits = NULL; + + sources = pmSourcesReadCMP (realname, hdu->header); + psFree (realname); + break; + + case PM_FPA_FILE_CMF: + // read in header, if not yet loaded + hdu = pmFPAviewThisHDU (view, file->fpa); + if (hdu->header == NULL) { + char *headname = pmFPAfileNameFromRule (file->extxtra, file, view); + psFitsMoveExtName (file->fits, headname); + hdu->header = psFitsReadHeader (NULL, file->fits); + psFree (headname); + } + + // we need to find the corresponding table EXTNAME. + // first check the header + char *dataname = psMetadataLookupStr (NULL, hdu->header, "EXTDATA"); + psMemIncrRefCounter (dataname); // so free below is safe + if (!dataname) { + // if it is not defined in the header, try the value in the filerule + dataname = pmFPAfileNameFromRule (file->extrule, file, view); + if (!dataname) + psAbort("cannot determine data EXTNAME"); + } + if (!psFitsMoveExtName (file->fits, dataname)) { + psAbort("cannot find data extension %s in %s", dataname, file->filename); + } + sources = pmSourcesReadCMF (file->fits, hdu->header); + psFree (dataname); + break; + + default: + fprintf (stderr, "warning: type mismatch\n"); + break; + } + readout->data_exists = true; + status = psMetadataAdd (readout->analysis, PS_LIST_TAIL, "PSPHOT.SOURCES", PS_DATA_ARRAY, "psphot sources", sources); + psFree (sources); + return true; +} + + Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO.h (revision 12167) @@ -0,0 +1,48 @@ +/* @file pmSourceIO.h + * @brief functions to read and write object files + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +# ifndef PM_SOURCE_IO_H +# define PM_SOURCE_IO_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +int pmSourceDophotType (pmSource *source); + +bool pmSourcesWriteRAW (psArray *sources, char *filename); +bool pmSourcesWriteOBJ (psArray *sources, char *filename); +bool pmSourcesWriteSX (psArray *sources, char *filename); +bool pmSourcesWriteCMP (psArray *sources, char *filename, psMetadata *header); +bool pmSourcesWriteCMF (psFits *fits, psArray *sources, psMetadata *header, char *extname); + +psArray *pmSourcesReadCMP (char *filename, psMetadata *header); +psArray *pmSourcesReadCMF (psFits *fits, psMetadata *header); + +bool pmSourcesWritePSFs (psArray *sources, char *filename); +bool pmSourcesWriteEXTs (psArray *sources, char *filename, bool require); +bool pmSourcesWriteNULLs (psArray *sources, char *filename); +bool pmMomentsWriteText (psArray *sources, char *filename); +bool pmPeaksWriteText (psArray *peaks, char *filename); + +bool pmFPAviewReadObjects (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAReadObjects (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipReadObjects (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellReadObjects (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutReadObjects (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +bool pmFPAviewWriteObjects (const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAWriteObjects (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmChipWriteObjects (pmChip *chip, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmCellWriteObjects (pmCell *cell, const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmReadoutWriteObjects (pmReadout *readout, const pmFPAview *view, pmFPAfile *file, pmConfig *config); + +/// @} +# endif /* PM_SOURCE_IO_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMF.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMF.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMF.c (revision 12167) @@ -0,0 +1,171 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.17 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-26 04:40:12 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +// elixir-style FITS table output (header + table in 1st extension) +// this format consists of a header derived from the image header +// followed by a zero-size matrix, followed by the table data +bool pmSourcesWriteCMF (psFits *fits, psArray *sources, psMetadata *header, char *extname) +{ + + psArray *table; + psMetadata *row; + int i, type; + psF32 *PAR, *dPAR; + float lsky; + bool status; + psEllipseShape shape; + psEllipseAxes axes; + + // find config information for output header + float ZERO_POINT = psMetadataLookupF32 (&status, header, "ZERO_PT"); + + table = psArrayAllocEmpty (sources->n); + + for (i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + pmModel *model = pmSourceSelectModel (source); + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + type = pmSourceDophotType (source); + lsky = (source->sky < 1.0) ? 0.0 : log10(source->sky); + + shape.sx = PAR[PM_PAR_SXX]; + shape.sy = PAR[PM_PAR_SYY]; + shape.sxy = PAR[PM_PAR_SXY]; + axes = psEllipseShapeToAxes (shape, 20.0); + + row = psMetadataAlloc (); + psMetadataAdd (row, PS_LIST_TAIL, "X_PIX", PS_DATA_F32, "", PAR[PM_PAR_XPOS]); + psMetadataAdd (row, PS_LIST_TAIL, "Y_PIX", PS_DATA_F32, "", PAR[PM_PAR_YPOS]); + psMetadataAdd (row, PS_LIST_TAIL, "MAG_RAW", PS_DATA_F32, "", PS_MIN (99.0, source->psfMag + ZERO_POINT)); + psMetadataAdd (row, PS_LIST_TAIL, "MAG_ERR", PS_DATA_F32, "", PS_MIN (999, 1000*source->errMag)); + psMetadataAdd (row, PS_LIST_TAIL, "MAG_GAL", PS_DATA_F32, "", PS_MIN (99.0, source->extMag + ZERO_POINT)); + psMetadataAdd (row, PS_LIST_TAIL, "MAG_AP", PS_DATA_F32, "", PS_MIN (99.0, source->apMag + ZERO_POINT)); + psMetadataAdd (row, PS_LIST_TAIL, "LOG_SKY", PS_DATA_F32, "", lsky); + psMetadataAdd (row, PS_LIST_TAIL, "FWHM_X", PS_DATA_F32, "", axes.major); + psMetadataAdd (row, PS_LIST_TAIL, "FWHM_Y", PS_DATA_F32, "", axes.minor); + psMetadataAdd (row, PS_LIST_TAIL, "THETA", PS_DATA_F32, "", axes.theta); + psMetadataAdd (row, PS_LIST_TAIL, "DOPHOT", PS_DATA_U8, "", type); + psMetadataAdd (row, PS_LIST_TAIL, "WEIGHT", PS_DATA_U8, "", PS_MIN (255, PS_MAX(0, 255*source->pixWeight))); + psMetadataAdd (row, PS_LIST_TAIL, "DUMMY", PS_DATA_U16, "", 0); + + psArrayAdd (table, 100, row); + psFree (row); + } + + if (table->n == 0) { + psFitsWriteBlank (fits, header, extname); + psFree (table); + return true; + } + + psTrace ("pmFPAfile", 5, "writing ext data %s\n", extname); + if (!psFitsWriteTable (fits, header, table, extname)) { + psError(PS_ERR_IO, false, "writing ext data %s\n", extname); + psFree(table); + return false; + } + + psFree (table); + return true; +} + +// read in a readout from the fits file +psArray *pmSourcesReadCMF (psFits *fits, psMetadata *header) +{ + + bool status; + psF32 *PAR, *dPAR; + psEllipseShape shape; + psEllipseAxes axes; + float lsky; + + // define PSF model type + int modelType = pmModelSetType ("PS_MODEL_GAUSS"); + + char *PSF_NAME = psMetadataLookupStr (&status, header, "PSF_NAME"); + if (PSF_NAME != NULL) { + modelType = pmModelSetType (PSF_NAME); + } + + // find config information for output header + float ZERO_POINT = psMetadataLookupF32 (&status, header, "ZERO_PT"); + if (!status) + ZERO_POINT = 25.0; + + psArray *table = psFitsReadTable (fits); + // validate a single row of the table (must match SMP) + + psArray *sources = psArrayAlloc (table->n); + + // convert the table to the pmSource entries + // XXX need to chooose PSF vs EXT, based on type? + for (int i = 0; i < table->n; i++) { + pmSource *source = pmSourceAlloc (); + pmModel *model = pmModelAlloc (modelType); + source->modelPSF = model; + source->type = PM_SOURCE_TYPE_STAR; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + psMetadata *row = table->data[i]; + + lsky = psMetadataLookupF32 (&status, row, "LOG_SKY"); + PAR[PM_PAR_SKY] = pow(lsky, 10.0); + PAR[PM_PAR_XPOS] = psMetadataLookupF32 (&status, row, "X_PIX"); + PAR[PM_PAR_YPOS] = psMetadataLookupF32 (&status, row, "Y_PIX"); + axes.major = psMetadataLookupF32 (&status, row, "FWHM_X"); + axes.minor = psMetadataLookupF32 (&status, row, "FWHM_Y"); + axes.theta = psMetadataLookupF32 (&status, row, "THETA"); + + shape = psEllipseAxesToShape (axes); + + PAR[PM_PAR_SXX] = shape.sx; + PAR[PM_PAR_SYY] = shape.sy; + PAR[PM_PAR_SXY] = shape.sxy; + + source->psfMag = psMetadataLookupF32 (&status, row, "MAG_RAW") - ZERO_POINT; + source->extMag = psMetadataLookupF32 (&status, row, "MAG_GAL") - ZERO_POINT; + source->errMag = psMetadataLookupF32 (&status, row, "MAG_ERR"); + source->apMag = psMetadataLookupF32 (&status, row, "MAG_AP") - ZERO_POINT; + + sources->data[i] = source; + } + psFree (table); + return (sources); +} Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMP.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMP.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO_CMP.c (revision 12167) @@ -0,0 +1,290 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.23 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +// XXX make sure in and out have consistent zero-point adjustments +// XXX make sure the angle in correctly translated to/from degrees +// XXX we lose all information from the 'type' field + +// XXX update this file is we convert to PAR[4] : SigmaX*sqrt(2) (not 1/SigmaX) + +// elixir-style pseudo FITS table (header + ascii list) +bool pmSourcesWriteCMP (psArray *sources, char *filename, psMetadata *header) +{ + + int i, type; + // psMetadataItem *mdi; + psF32 *PAR, *dPAR; + float lsky = 0; + bool status; + psEllipseShape shape; + psEllipseAxes axes; + + // find config information for output header + float ZERO_POINT = psMetadataLookupF32 (&status, header, "ZERO_PT"); + if (!status) + ZERO_POINT = 25.0; + + // MEF elements have XTENSION, not SIMPLE: remove this (replace with SIMPLE) + psMetadataLookupStr (&status, header, "XTENSION"); + if (status) + psMetadataRemoveKey (header, "XTENSION"); + + // create file, write-out header + psMetadataAddS32 (header, PS_LIST_HEAD, "NAXIS", PS_META_REPLACE, "head data only", 0); + psMetadataAddBool (header, PS_LIST_HEAD, "SIMPLE", PS_META_REPLACE, "CMP file, not simple", false); + + psFits *fits = psFitsOpen (filename, "w"); + if (fits == NULL) { + psError(PS_ERR_IO, false, "can't open output file for write %s\n", filename); + return false; + } + // XXX what is the EXTNAME?? + if (!psFitsWriteBlank(fits, header, "")) { + psError(PS_ERR_IO, false, "Writing header to %s\n", filename); + (void)psFitsClose(fits); + return false; + } + if (!psFitsClose(fits)) { + const psErrorCode code = psErrorCodeLast(); + + if (code == PS_ERR_BAD_FITS) { + psErrorClear(); + } else { + psError(PS_ERR_IO, false, "Closing %s\n", filename); + return false; + } + } + + // re-open, add data to end of file + FILE *f = fopen (filename, "a+"); + if (f == NULL) { + psLogMsg ("WriteSourceOBJ", 3, "can't reopen output file for append %s\n", filename); + psError(PS_ERR_IO, false, "can't open output file for output %s\n", filename); + return false; + } + + fseeko(f, 0, SEEK_END); + + psLine *line = psLineAlloc (67); // 66 is imclean-defined line length + + // write sources with models first + for (i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + pmModel *model = pmSourceSelectModel (source); + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + type = pmSourceDophotType (source); + lsky = (source->sky < 1.0) ? 0.0 : log10(source->sky); + + shape.sx = PAR[PM_PAR_SXX]; + shape.sy = PAR[PM_PAR_SYY]; + shape.sxy = PAR[PM_PAR_SXY]; + axes = psEllipseShapeToAxes (shape, 20.0); + + float errMag = isfinite(source->errMag) ? source->errMag : 999; + + psLineInit (line); + psLineAdd (line, "%6.1f ", PAR[PM_PAR_XPOS]); + psLineAdd (line, "%6.1f ", PAR[PM_PAR_YPOS]); + psLineAdd (line, "%6.3f ", PS_MIN (99.0, source->psfMag + ZERO_POINT)); + psLineAdd (line, "%03d ", PS_MIN (999, (int)errMag)); + psLineAdd (line, "%2d ", type); + psLineAdd (line, "%3.1f ", lsky); + psLineAdd (line, "%6.3f ", PS_MIN (99.0, source->extMag + ZERO_POINT)); + psLineAdd (line, "%6.3f ", PS_MIN (99.0, source->apMag + ZERO_POINT)); + psLineAdd (line, "%6.2f ", axes.major); + psLineAdd (line, "%6.2f ", axes.minor); + psLineAdd (line, "%5.1f\n", axes.theta); + fwrite (line->line, 1, line->Nline, f); + } + fclose (f); + psFree (line); + return true; +} + +# define BYTES_STAR 66 +# define BLOCK 1000 + +// elixir-style pseudo FITS table (header + ascii list) +psArray *pmSourcesReadCMP (char *filename, psMetadata *header) +{ + + bool status; + int Ninstar; + psF32 *PAR, *dPAR; + psEllipseShape shape; + psEllipseAxes axes; + + // define PSF model type + int modelType = pmModelSetType ("PS_MODEL_GAUSS"); + + char *PSF_NAME = psMetadataLookupStr (&status, header, "PSF_NAME"); + if (PSF_NAME != NULL) { + modelType = pmModelSetType (PSF_NAME); + } + + // find config information for output header + float ZERO_POINT = psMetadataLookupF32 (&status, header, "ZERO_PT"); + if (!status) + ZERO_POINT = 25.0; + + // how many lines in the header? + long nLines = header->list->n; + off_t nBytes = nLines * 80; + if (nBytes % 2880) { + off_t nBlock = 1 + (off_t)(nBytes / 2880); + nBytes = nBlock * 2880; + } + + // re-open, seek to end of header + FILE *f = fopen (filename, "r"); + if (f == NULL) { + psLogMsg ("pmSourcesReadCMP", 3, "can't open output file for input %s\n", filename); + return NULL; + } + + fseeko(f, nBytes, SEEK_SET); + + // prepare array to store data + int nStars = psMetadataLookupS32 (&status, header, "NSTARS"); + psArray *sources = psArrayAlloc (nStars); + sources->n = 0; + + // we have fixed bytes / line : use that info + // XXX use the min of nStars and BLOCK? + char *buffer = psAlloc (BYTES_STAR*PS_MIN(nStars, BLOCK)); + + int Nextra = 0; + while (true) { + /* load next data block */ + // XXX fix the use of two vars with different case -JH + off_t Nbytes = BYTES_STAR * BLOCK - Nextra; + off_t nbytes = fread (&buffer[Nextra], 1, Nbytes, f); + if (nbytes == 0) { + goto done_load; + } + nbytes += Nextra; + + /* check line-by-line integrity */ + char *c = buffer; + char *c2 = NULL; + while (c < buffer + nbytes) { + for (c2 = c; *c2 == '\n'; c2++) + ; + if (c2 > c) { /* extra return chars */ + memmove (c, c2, (int)(buffer + nbytes - c2)); + int Nskip = c2 - c; + nbytes -= Nskip; + bzero (buffer + nbytes, Nskip); + psLogMsg (__func__, 4, "deleted %d extra return chars\n", Nskip); + } + c2 = strchr (c, '\n'); + if (c2 == (char *) NULL) { + goto done_check; + } + c2++; + if ((c2 - c) != BYTES_STAR) { /* bad line, delete it */ + memmove (c, c2, (int)(buffer + nbytes - c2)); + int Nskip = c2 - c; + nbytes -= Nskip; + bzero (buffer + nbytes, Nskip); + psLogMsg (__func__, 4, "deleted line, %d extra chars\n", Nskip); + } else { + c = c2; + } + } +done_check: + + /* extract data for stars */ + Ninstar = nbytes / BYTES_STAR; + Nextra = nbytes % BYTES_STAR; + for (int j = 0; j < Ninstar; j++) { + psString line = psStringNCopy (&buffer[j*BYTES_STAR], BYTES_STAR); + + psArray *array = psStringSplitArray (line, " ", false); + + // XXX this is a bit cheap: I don't even attempt to interpret the + // sextractor / dophot analysis to distinguish stars and galaxies + // your milage may vary... + pmSource *source = pmSourceAlloc (); + source->modelPSF = pmModelAlloc (modelType); + source->type = PM_SOURCE_TYPE_STAR; + + PAR = source->modelPSF->params->data.F32; + dPAR = source->modelPSF->dparams->data.F32; + + PAR[PM_PAR_SKY] = pow (atof (array->data[5]), 10.0); + PAR[PM_PAR_XPOS] = atof (array->data[0]); + PAR[PM_PAR_YPOS] = atof (array->data[1]); + source->psfMag = atof (array->data[2]); + source->extMag = atof (array->data[6]); + source->errMag = atof (array->data[3]) / 1000.0; + source->apMag = atof (array->data[7]); + axes.major = atof (array->data[8]); + axes.minor = atof (array->data[9]); + axes.theta = atof (array->data[10]); + + if (!isfinite(axes.major)) + goto skip_source; + if (!isfinite(axes.minor)) + goto skip_source; + if (!isfinite(axes.theta)) + goto skip_source; + + shape = psEllipseAxesToShape (axes); + + PAR[PM_PAR_SXX] = shape.sx; + PAR[PM_PAR_SYY] = shape.sy; + PAR[PM_PAR_SXY] = shape.sxy; + + psArrayAdd (sources, 100, source); + +skip_source: + psFree (line); + psFree (array); + psFree (source); + + } + } +done_load: + + // XXX if sources->n != nStars, give an error? + psFree (buffer); + + fclose (f); + return (sources); +} Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO_OBJ.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO_OBJ.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO_OBJ.c (revision 12167) @@ -0,0 +1,96 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-11-29 02:36:38 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +// dophot-style output list with fixed line width +bool pmSourcesWriteOBJ (psArray *sources, char *filename) +{ + + int type; + psF32 *PAR, *dPAR; + float dmag, apResid; + psEllipseShape shape; + psEllipseAxes axes; + + psTimerStart ("string"); + + psLine *line = psLineAlloc (104); // 104 is dophot-defined line length + + FILE *f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg (__func__, 3, "can't open output file for output %s\n", filename); + return false; + } + + // write sources with models + for (int i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + pmModel *model = pmSourceSelectModel (source); + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + dmag = dPAR[PM_PAR_I0] / PAR[PM_PAR_I0]; + type = pmSourceDophotType (source); + if ((source->apMag < 99.0) && (source->psfMag < 99.0)) { + apResid = source->apMag - source->psfMag; + } else { + apResid = 0.0; + } + + shape.sx = PAR[PM_PAR_SXX]; + shape.sy = PAR[PM_PAR_SYY]; + shape.sxy = PAR[PM_PAR_SXY]; + axes = psEllipseShapeToAxes (shape, 20.0); + + psLineInit (line); + psLineAdd (line, "%3d", type); + psLineAdd (line, "%8.2f", PAR[PM_PAR_XPOS]); + psLineAdd (line, "%8.2f", PAR[PM_PAR_YPOS]); + psLineAdd (line, "%8.3f", source->psfMag); + psLineAdd (line, "%6.3f", dmag); + psLineAdd (line, "%9.2f", source->sky); + psLineAdd (line, "%9.3f", axes.major); + psLineAdd (line, "%9.3f", axes.minor); + psLineAdd (line, "%7.2f", axes.theta); + psLineAdd (line, "%8.3f", source->extMag); + psLineAdd (line, "%8.3f", source->apMag); + psLineAdd (line, "%8.2f\n", apResid); + fwrite (line->line, 1, line->Nline, f); + } + fclose (f); + psFree (line); + fprintf (stderr, "%f seconds for %d objects\n", psTimerMark ("string"), (int)sources->n); + return true; +} Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO_RAW.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO_RAW.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO_RAW.c (revision 12167) @@ -0,0 +1,275 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.13 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-19 04:39:02 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourcePhotometry.h" +#include "pmSourceIO.h" + +/***** Text Output Methods *****/ +bool pmSourcesWriteRAW (psArray *sources, char *filename) +{ + + char *name = (char *) psAlloc (strlen(filename) + 10); + + sprintf (name, "%s.psf.dat", filename); + pmSourcesWritePSFs (sources, name); + + sprintf (name, "%s.ext.dat", filename); + pmSourcesWriteEXTs (sources, name, true); + + sprintf (name, "%s.nul.dat", filename); + pmSourcesWriteNULLs (sources, name); + + sprintf (name, "%s.mnt.dat", filename); + pmMomentsWriteText (sources, name); + + psFree (name); + return true; +} + +// write the PSF sources to an output file +bool pmSourcesWritePSFs (psArray *sources, char *filename) +{ + + double dPos; + int i, j; + FILE *f; + psF32 *PAR, *dPAR; + pmModel *model; + + f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg (__func__, 3, "can't open output file for PSF sources: %s\n", filename); + return false; + } + + // write sources with models first + for (i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + if (source->type != PM_SOURCE_TYPE_STAR) + continue; + model = source->modelPSF; + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + // dPos is positional error, dMag is mag error + dPos = hypot (dPAR[PM_PAR_XPOS], dPAR[PM_PAR_YPOS]); + + fprintf (f, "%7.1f %7.1f %7.1f %8.4f %7.4f %7.4f ", + PAR[PM_PAR_XPOS], PAR[PM_PAR_YPOS], source->sky, + source->psfMag, source->errMag, dPos); + + for (j = 4; j < model->params->n; j++) { + fprintf (f, "%9.6f ", PAR[j]); + } + fprintf (f, " : "); + for (j = 4; j < model->params->n; j++) { + fprintf (f, "%9.6f ", dPAR[j]); + } + + float logChi = ((model[0].chisq == 0.0) || (model[0].nDOF == 0)) ? NAN : log10(model[0].chisq/model[0].nDOF); + float logChiNorm = ((model[0].chisqNorm == 0.0) || (model[0].nDOF == 0)) ? NAN : log10(model[0].chisqNorm/model[0].nDOF); + + fprintf (f, ": %8.4f %2d %#5x %7.3f %7.3f %7.1f %7.2f %4.2f %4d %2d\n", + source[0].apMag, source[0].type, source[0].mode, + logChi, logChiNorm, + source[0].peak->SN, + model[0].radiusFit, + source[0].pixWeight, + model[0].nDOF, + model[0].nIter); + } + fclose (f); + return true; +} + +// dump the sources to an output file +bool pmSourcesWriteEXTs (psArray *sources, char *filename, bool requireEXT) +{ + + double dPos; + int i, j; + FILE *f; + psF32 *PAR, *dPAR; + pmModel *model; + + f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg ("pmModelWriteEXTs", 3, "can't open output file for EXT sources: %s\n", filename); + return false; + } + + // write sources with models first + for (i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + + if (requireEXT && (source->type != PM_SOURCE_TYPE_EXTENDED)) + continue; + + model = source->modelEXT; + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + // dPos is shape error + // XXX these are hardwired for SGAUSS + dPos = hypot ((dPAR[PM_PAR_SXX] / PAR[PM_PAR_SXX]), (dPAR[PM_PAR_SYY] / PAR[PM_PAR_SYY])); + + fprintf (f, "%7.1f %7.1f %7.1f %8.4f %7.4f %7.4f ", + PAR[PM_PAR_XPOS], PAR[PM_PAR_YPOS], source->sky, + source->extMag, source->errMag, dPos); + + for (j = 4; j < model->params->n; j++) { + fprintf (f, "%9.6f ", PAR[j]); + } + fprintf (f, " : "); + for (j = 4; j < model->params->n; j++) { + fprintf (f, "%9.6f ", dPAR[j]); + } + fprintf (f, ": %7.4f %2d %#5x %7.3f %7.3f %7.1f %7.2f %4.2f %4d %2d\n", + source->apMag, + source[0].type, source[0].mode, + log10(model[0].chisq/model[0].nDOF), + log10(model[0].chisqNorm/model[0].nDOF), + source[0].peak->SN, + model[0].radiusFit, + source[0].pixWeight, + model[0].nDOF, + model[0].nIter); + } + fclose (f); + return true; +} + +// dump the sources to an output file +bool pmSourcesWriteNULLs (psArray *sources, char *filename) +{ + + int i; + FILE *f; + pmMoments *moment = NULL; + pmSource *source = NULL; + + f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg ("DumpObjects", 3, "can't open output file for NULL sources: %s\n", filename); + return false; + } + + pmMoments *empty = pmMomentsAlloc (); + + // write sources with models first + for (i = 0; i < sources->n; i++) { + source = sources->data[i]; + + // skip these sources (in PSF or EXT) + if (source->type == PM_SOURCE_TYPE_STAR) + continue; + if (source->type == PM_SOURCE_TYPE_EXTENDED) + continue; + + if (source->moments == NULL) { + moment = empty; + } else { + moment = source->moments; + } + + fprintf (f, "%5d %5d %7.1f %7.1f %7.1f %6.3f %6.3f %8.1f %7.1f %7.1f %7.1f %4d %2d\n", + source->peak->x, source->peak->y, source->peak->value, + moment->x, moment->y, + moment->Sx, moment->Sy, + moment->Sum, moment->Peak, + moment->Sky, moment->SN, + moment->nPixels, source->type); + } + fclose (f); + psFree (empty); + return true; +} + +// write the moments to an output file +bool pmMomentsWriteText (psArray *sources, char *filename) +{ + + int i; + FILE *f; + pmSource *source = NULL; + + f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg ("pmMomentsWriteText", 3, "can't open output file for moments: %s\n", filename); + return false; + } + + for (i = 0; i < sources->n; i++) { + source = sources->data[i]; + if (source->moments == NULL) + continue; + fprintf (f, "%5d %5d %7.1f %7.1f %7.1f %6.3f %6.3f %10.1f %7.1f %7.1f %7.1f %4d %2d %#5x\n", + source->peak->x, source->peak->y, source->peak->value, + source->moments->x, source->moments->y, + source->moments->Sx, source->moments->Sy, + source->moments->Sum, source->moments->Peak, + source->moments->Sky, source->moments->SN, + source->moments->nPixels, source->type, source->mode); + } + fclose (f); + return true; +} + +// write the peaks to an output file +bool pmPeaksWriteText (psArray *peaks, char *filename) +{ + + int i; + FILE *f; + + f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg ("pmPeaksWriteText", 3, "can't open output file for peaks%s\n", filename); + return false; + } + + for (i = 0; i < peaks->n; i++) { + pmPeak *peak = peaks->data[i]; + if (peak == NULL) + continue; + fprintf (f, "%5d %5d %7.1f %7.2f %7.2f %7.2f\n", + peak->x, peak->y, peak->value, peak->SN, peak->xf, peak->yf); + } + fclose (f); + return true; +} + Index: /branches/rel-1-1/psModules/src/objects/pmSourceIO_SX.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceIO_SX.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceIO_SX.c (revision 12167) @@ -0,0 +1,88 @@ +/** @file pmSourceIO.c + * + * @author EAM, IfA + * + * @version $Revision: 1.7 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-11-29 02:36:38 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAview.h" +#include "pmFPAfile.h" + +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourceIO.h" + +// elixir-mode / sextractor-style output list with fixed line width +bool pmSourcesWriteSX (psArray *sources, char *filename) +{ + + psF32 *PAR, *dPAR; + psEllipseShape shape; + psEllipseAxes axes; + + psLine *line = psLineAlloc (110); // 110 is sextractor line length + + FILE *f = fopen (filename, "w"); + if (f == NULL) { + psLogMsg (__func__, 3, "can't open output file for output %s\n", filename); + return false; + } + + // write sources with models + for (int i = 0; i < sources->n; i++) { + pmSource *source = (pmSource *) sources->data[i]; + pmModel *model = pmSourceSelectModel (source); + if (model == NULL) + continue; + + PAR = model->params->data.F32; + dPAR = model->dparams->data.F32; + + // pmSourceSextractType (source, &type, &flags); + + shape.sx = PAR[PM_PAR_SXX]; + shape.sy = PAR[PM_PAR_SYY]; + shape.sxy = PAR[PM_PAR_SXY]; + axes = psEllipseShapeToAxes (shape, 20.0); + + psLineInit (line); + psLineAdd (line, "%5.2f", 0.0); // should be type + psLineAdd (line, "%11.3f", PAR[PM_PAR_XPOS]); + psLineAdd (line, "%11.3f", PAR[PM_PAR_YPOS]); + psLineAdd (line, "%9.4f", source->psfMag); + psLineAdd (line, "%9.4f", source->errMag); + psLineAdd (line, "%13.4f", source->sky); + psLineAdd (line, "%9.2f", axes.major); + psLineAdd (line, "%9.2f", axes.minor); + psLineAdd (line, "%6.1f", axes.theta); + psLineAdd (line, "%9.4f", source->extMag); + psLineAdd (line, "%9.4f", source->apMag); + psLineAdd (line, "%4d\n", 0); // should be flags + fwrite (line->line, 1, line->Nline, f); + } + fclose (f); + psFree (line); + return true; +} + +// XXX need to fix the FWHM / shape stuff, +// XXX make sure we are using the correct mags, etc Index: /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.c (revision 12167) @@ -0,0 +1,584 @@ +/** @file pmSourcePhotometry.c + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.22 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-07 23:58:17 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmModelGroup.h" +#include "pmSourcePhotometry.h" + +# define DO_SKY 0 + +static float AP_MIN_SN = 0.0; + +bool pmSourceMagnitudesInit (psMetadata *config) +{ + + bool status; + + float limit = psMetadataLookupF32 (&status, config, "AP_MIN_SN"); + if (status) { + AP_MIN_SN = limit; + } + return true; +} + +/** + this function is used to calculate the three defined source magnitudes: + - apMag : only if S/N > AP_MIN_SN + : is optionally corrected for curve-of-growth if: + - the source is a STAR (PSF) + - the option is selected (mode & PM_SOURCE_PHOT_GROWTH) + - psfMag : all sources with non-NULL modelPSF + : is optionally corrected for aperture residual if: + - the source is a STAR (PSF) + - the option is selected (mode & PM_SOURCE_PHOT_APCORR) + + - extMag : all sources with non-NULL modelEXT +**/ + +// XXX masked region should be (optionally) elliptical +bool pmSourceMagnitudes (pmSource *source, pmPSF *psf, pmSourcePhotometryMode mode) +{ + + int status = false; + bool isPSF; + float x, y; + float rflux; + float SN; + pmModel *model; + + source->psfMag = NAN; + source->extMag = NAN; + source->errMag = NAN; + source->apMag = NAN; + + // we must have a valid model + model = pmSourceGetModel (&isPSF, source); + if (model == NULL) + return false; + + if (model->dparams->data.F32[PM_PAR_I0] > 0) { + SN = model->params->data.F32[PM_PAR_I0] / model->dparams->data.F32[PM_PAR_I0]; + source->errMag = 1.0 / SN; + } else { + SN = NAN; + source->errMag = NAN; + } + x = model->params->data.F32[PM_PAR_XPOS]; + y = model->params->data.F32[PM_PAR_YPOS]; + + // measure object model photometry + status = pmSourcePhotometryModel (&source->psfMag, source->modelPSF); + status = pmSourcePhotometryModel (&source->extMag, source->modelEXT); + // for PSFs, correct both apMag and psfMag to same system, consistent with infinite flux star in aperture RADIUS + if ((mode & PM_SOURCE_PHOT_APCORR) && isPSF && psf) { + // convert to the equivalent 2D model? + source->psfMag += psPolynomial4DEval (psf->ApTrend, x, y, 0.0, 0.0); + } + + if (!isfinite(SN) || (SN < AP_MIN_SN)) + return false; + + // replace source flux + // XXX need to be certain which model and size of mask for prior subtraction + if (source->mode & PM_SOURCE_MODE_SUBTRACTED) { + pmModelAdd (source->pixels, source->mask, model, false, false); + } + + // if we are measuring aperture photometry and applying the growth correction, + // we need to shift the flux in the selected pixels (but not the mask) + // psImageShift (); + psImage *flux; + if (mode & PM_SOURCE_PHOT_INTERP) { + float dx = 0.5 - x + (int)x; + float dy = 0.5 - y + (int)y; + x += dx; + y += dy; + flux = psImageShift (NULL, source->pixels, dx, dy, 0.0, PS_INTERPOLATE_BICUBE); + // flux = psImageShift (NULL, source->pixels, dx, dy, 0.0, PS_INTERPOLATE_BILINEAR); + + // XXX this is test code to verify the shift is doing the right thing (seems to be) + # if (0) + // measure centroid of unshifted gaussian (should be 16.0,16.0) + { + psImage *image = source->pixels; + float xo = 0.0; + float yo = 0.0; + float xo2 = 0.0; + float yo2 = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + xo2 += i*i*image->data.F32[j][i]; + yo2 += j*j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + xo2 = sqrt (xo2/no - xo*xo); + yo2 = sqrt (yo2/no - yo*yo); + fprintf (stderr, "pre-shift centroid: %f,%f, sigma: %f,%f: flux: %f\n", xo, yo, xo2, yo2, no); + } + + // measure centroid of unshifted gaussian (should be 16.0,16.0) + { + psImage *image = flux; + float xo = 0.0; + float yo = 0.0; + float xo2 = 0.0; + float yo2 = 0.0; + float no = 0.0; + for (int j = 0; j < image->numRows; j++) + { + for (int i = 0; i < image->numCols; i++) { + xo += i*image->data.F32[j][i]; + yo += j*image->data.F32[j][i]; + xo2 += i*i*image->data.F32[j][i]; + yo2 += j*j*image->data.F32[j][i]; + no += image->data.F32[j][i]; + } + } + xo /= no; + yo /= no; + xo2 = sqrt (xo2/no - xo*xo); + yo2 = sqrt (yo2/no - yo*yo); + fprintf (stderr, "pre-shift centroid: %f,%f, sigma: %f,%f: flux: %f\n", xo, yo, xo2, yo2, no); + } + # endif + + } else { + flux = source->pixels; + } + // set aperture mask circle to model radius + // XXX use a different radius for apertures and fits... + psImageKeepCircle (source->mask, x, y, model->radiusFit, "OR", PM_MASK_MARK); + + // measure the weight of included pixels + // XXX is this supposed to use the weight or the flux? + if (mode & PM_SOURCE_PHOT_WEIGHT) { + pmSourcePixelWeight (&source->pixWeight, model, source->pixels, source->mask); + } + + // measure object aperture photometry + status = pmSourcePhotometryAper (&source->apMag, model, flux, source->mask); + + // for PSFs, correct both apMag and psfMag to same system, consistent with infinite flux star in aperture RADIUS + if (status && isPSF && psf) { + if (psf->growth && (mode & PM_SOURCE_PHOT_GROWTH)) { + source->apMag += pmGrowthCurveCorrect (psf->growth, model->radiusFit); + } + if (mode & PM_SOURCE_PHOT_APCORR) { + rflux = pow (10.0, 0.4*source->psfMag); + source->apMag -= PS_SQR(model->radiusFit)*rflux * psf->skyBias + psf->skySat / rflux; + } + } + if (mode & PM_SOURCE_PHOT_INTERP) { + psFree (flux); + } + + // unmask aperture + psImageKeepCircle (source->mask, x, y, model->radiusFit, "AND", PS_NOT_U8(PM_MASK_MARK)); + + // if source was originally subtracted, re-subtract object, leave local sky + if (source->mode & PM_SOURCE_MODE_SUBTRACTED) { + pmModelSub (source->pixels, source->mask, model, false, false); + } + + return status; +} + +/* +aprMag' - fitMag = flux*skySat + r^2*rflux*skyBias + ApTrend(x,y) +(aprMag - flux*skySat - r^2*rflux*skyBias) - fitMAg = ApTrend(x,y) +(aprMag - flux*skySat - r^2*rflux*skyBias) = fitMAg + ApTrend(x,y) + +*/ + +// return source model magnitude +bool pmSourcePhotometryModel (float *fitMag, pmModel *model) +{ + + float fitSum = 0; + *fitMag = NAN; + + if (model == NULL) { + return false; + } + + // measure fitMag + pmModelFlux modelFluxFunc = pmModelFlux_GetFunction (model->type); + fitSum = modelFluxFunc (model->params); + if (fitSum <= 0) + return false; + if (!isfinite(fitSum)) + return false; + *fitMag = -2.5*log10(fitSum); + + return (true); +} + +// return source aperture magnitude +bool pmSourcePhotometryAper (float *apMag, pmModel *model, psImage *image, psImage *mask) +{ + float apSum = 0; + float sky = 0; + *apMag = NAN; + + if (model == NULL) { + return false; + } + + if (DO_SKY) { + sky = model->params->data.F32[PM_PAR_SKY]; + } else { + sky = 0; + } + + psF32 **imData = image->data.F32; + psU8 **mkData = mask->data.U8; + + // measure apMag + for (int ix = 0; ix < image->numCols; ix++) { + for (int iy = 0; iy < image->numRows; iy++) { + if (mkData[iy][ix]) + continue; + apSum += imData[iy][ix] - sky; + } + } + if (apSum <= 0) + return false; + + *apMag = -2.5*log10(apSum); + return (true); +} + +// return source aperture magnitude +bool pmSourcePixelWeight (float *pixWeight, pmModel *model, psImage *image, psImage *mask) +{ + float modelSum = 0; + float validSum = 0; + float sky = 0; + float value; + + int Xo, Yo, dP; + int dX, DX, NX; + int dY, DY, NY; + + *pixWeight = 0.0; + + if (model == NULL) + return false; + + // we only care about the value of the object model, not the local sky + if (DO_SKY) { + sky = model->params->data.F32[PM_PAR_SKY]; + } else { + sky = 0; + } + + // the model function returns the source flux at a position + pmModelFunc modelFunc = pmModelFunc_GetFunction (model->type); + psVector *coord = psVectorAlloc(2, PS_TYPE_F32); + + psVector *params = model->params; + + Xo = params->data.F32[PM_PAR_XPOS]; + Yo = params->data.F32[PM_PAR_YPOS]; + + dX = Xo - image->col0; + dP = image->numCols - dX; + DX = PS_MAX(dX, dP); + NX = image->numCols; + + dY = Yo - image->row0; + dP = image->numRows - dY; + DY = PS_MAX(dY, dP); + NY = image->numRows; + + // measure modelSum and validSum + // XXX this does not work for sources near the edge: we need to measure for + // a full square region + for (int ix = -DX; ix < DX + 1; ix++) { + int mx = ix + dX; + for (int iy = -DY; iy < DY + 1; iy++) { + int my = iy + dY; + + coord->data.F32[0] = (psF32) (ix + Xo); + coord->data.F32[1] = (psF32) (iy + Yo); + + // for the full model, add all points + value = modelFunc (NULL, params, coord) - sky; + modelSum += value; + + // include count only the unmasked pixels within the image area + if (mx < 0) + continue; + if (my < 0) + continue; + if (mx >= NX) + continue; + if (my >= NY) + continue; + if (mask->data.U8[my][mx]) + continue; + + validSum += value; + } + } + psFree (coord); + + if (validSum <= 0) + return false; + + *pixWeight = validSum / modelSum; + return (true); +} + +double pmSourceCrossProduct (const pmSource *Mi, + const pmSource *Mj, + const bool unweighted_sum) // should the cross product be weighted? +{ + + int Xs, Xe, Ys, Ye; + int xi, xj, yi, yj; + int xIs, xJs, yIs, yJs; + int xIe, yIe; + double flux, wt; + + const psImage *Pi = Mi->pixels; + const psImage *Pj = Mj->pixels; + + const psImage *Wi = Mi->weight; + + const psImage *Ti = Mi->mask; + const psImage *Tj = Mj->mask; + + Xs = PS_MAX (Pi->col0, Pj->col0); + Xe = PS_MIN (Pi->col0 + Pi->numCols, Pj->col0 + Pj->numCols); + + Ys = PS_MAX (Pi->row0, Pj->row0); + Ye = PS_MIN (Pi->row0 + Pi->numRows, Pj->row0 + Pj->numRows); + + xIs = Xs - Pi->col0; + xJs = Xs - Pj->col0; + yIs = Ys - Pi->row0; + yJs = Ys - Pj->row0; + + xIe = Xe - Pi->col0; + yIe = Ye - Pi->row0; + + // note that this is addressing the same image pixels, + // though only if both are source not model images + flux = 0; + for (yi = yIs, yj = yJs; yi < yIe; yi++, yj++) { + for (xi = xIs, xj = xJs; xi < xIe; xi++, xj++) { + if (Ti->data.U8[yi][xi]) + continue; + if (Tj->data.U8[yj][xj]) + continue; + + if (unweighted_sum) { + flux += (Pi->data.F32[yi][xi] * Pj->data.F32[yj][xj]); + } else { + wt = Wi->data.F32[yi][xi]; + if (wt > 0) { + flux += (Pi->data.F32[yi][xi] * Pj->data.F32[yj][xj]) / wt; + } + } + } + } + return flux; +} + +double pmSourceCrossWeight(const pmSource *Mi, + const pmSource *Mj, + const bool unweighted_sum) // should the cross product be weighted? +{ + + int Xs, Xe, Ys, Ye; + int xi, xj, yi, yj; + int xIs, xJs, yIs, yJs; + int xIe, yIe; + double flux, wt; + + const psImage *Pi = Mi->pixels; + const psImage *Pj = Mj->pixels; + + const psImage *Wi = Mi->weight; + + const psImage *Ti = Mi->mask; + const psImage *Tj = Mj->mask; + + Xs = PS_MAX (Pi->col0, Pj->col0); + Xe = PS_MIN (Pi->col0 + Pi->numCols, Pj->col0 + Pj->numCols); + + Ys = PS_MAX (Pi->row0, Pj->row0); + Ye = PS_MIN (Pi->row0 + Pi->numRows, Pj->row0 + Pj->numRows); + + xIs = Xs - Pi->col0; + xJs = Xs - Pj->col0; + yIs = Ys - Pi->row0; + yJs = Ys - Pj->row0; + + xIe = Xe - Pi->col0; + yIe = Ye - Pi->row0; + + // note that this is addressing the same image pixels, + // though only if both are source not model images + flux = 0; + for (yi = yIs, yj = yJs; yi < yIe; yi++, yj++) { + for (xi = xIs, xj = xJs; xi < xIe; xi++, xj++) { + if (Ti->data.U8[yi][xi]) + continue; + if (Tj->data.U8[yj][xj]) + continue; + + if (unweighted_sum) { + flux++; + } else { + wt = Wi->data.F32[yi][xi]; + if (wt > 0) { + flux += 1.0 / wt; + } + } + } + } + return flux; +} + +double pmSourceWeight(const pmSource *Mi, + int term, + const bool unweighted_sum) // should the cross product be weighted? +{ + double flux = 0, wt = 0, factor = 0; + + const psImage *Pi = Mi->pixels; + const psImage *Wi = Mi->weight; + const psImage *Ti = Mi->mask; + + // note that this is addressing the same image pixels, + // though only if both are source not model images + for (int yi = 0; yi < Pi->numRows; yi++) { + for (int xi = 0; xi < Pi->numCols; xi++) { + if (Ti->data.U8[yi][xi]) + continue; + if (!unweighted_sum) { + wt = Wi->data.F32[yi][xi]; + if (wt == 0) + continue; + } + + switch (term) { + case 0: + factor = 1; + break; + case 1: + factor = xi + Pi->col0; + break; + case 2: + factor = yi + Pi->row0; + break; + default: + psAbort("invalid term for pmSourceWeight"); + } + + if (unweighted_sum) { + flux += (factor * Pi->data.F32[yi][xi]); + } else { + flux += (factor * Pi->data.F32[yi][xi]) / wt; + } + // fprintf (stderr, "Pi: %f, flux: %f\n", Pi->data.F32[yi][xi], flux); + } + } + return flux; +} + +bool pmSourceChisq (pmModel *model, psImage *image, psImage *mask, psImage *weight) +{ + + double dC = 0.0; + int Npix = 0; + for (int j = 0; j < image->numRows; j++) { + for (int i = 0; i < image->numCols; i++) { + if (mask->data.U8[j][i]) + continue; + if (weight->data.F32[j][i] <= 0) + continue; + dC += PS_SQR (image->data.F32[j][i]) / weight->data.F32[j][i]; + Npix ++; + } + } + model->nDOF = Npix - 1; + model->chisq = dC; + + return (true); +} + +// given a source, which model is currently appropriate? +// choose PSF or EXT based on source->type, but fall back on PSF +// if the EXT model is NULL +pmModel *pmSourceGetModel (bool *isPSF, const pmSource *source) +{ + + pmModel *model; + + switch (source->type) { + case PM_SOURCE_TYPE_STAR: + model = source->modelPSF; + if (model == NULL) + return NULL; + if (isPSF) + *isPSF = true; + return model; + + case PM_SOURCE_TYPE_EXTENDED: + model = source->modelEXT; + if (isPSF) + *isPSF = false; + if (model == NULL) { + model = source->modelPSF; + if (isPSF) + *isPSF = true; + } + if (model == NULL) { + if (isPSF) + *isPSF = FALSE; + return NULL; + } + return (model); + break; + + default: + if (isPSF) + *isPSF = false; + return NULL; + } + return NULL; +} Index: /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePhotometry.h (revision 12167) @@ -0,0 +1,61 @@ +/* @file pmSourcePhotometry.h + * @brief functions to measure source photometry + * + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_SOURCE_PHOTOMETRY_H +# define PM_SOURCE_PHOTOMETRY_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** + * + * The function returns both the magnitude of the fit, defined as -2.5log(flux), + * where the flux is integrated under the model, theoretically from a radius of 0 + * to infinity. In practice, we integrate the model beyond 50sigma. The aperture magnitude is + * defined as -2.5log(flux) , where the flux is summed for all pixels which are + * not excluded by the aperture mask. The model flux is calculated by calling the + * model-specific function provided by pmModelFlux_GetFunction. + * + * XXX: must code this. + * + */ + +typedef enum { + PM_SOURCE_PHOT_NONE = 0x0000, + PM_SOURCE_PHOT_GROWTH = 0x0001, + PM_SOURCE_PHOT_APCORR = 0x0002, + PM_SOURCE_PHOT_WEIGHT = 0x0004, + PM_SOURCE_PHOT_INTERP = 0x0008, +} pmSourcePhotometryMode; + +bool pmSourcePhotometryModel( + float *fitMag, ///< integrated fit magnitude + pmModel *model ///< model used for photometry +); + +bool pmSourcePhotometryAper( + float *apMag, ///< aperture flux magnitude + pmModel *model, ///< model used for photometry + psImage *image, ///< image pixels to be used + psImage *mask ///< mask of pixels to ignore +); + +bool pmSourceMagnitudesInit (psMetadata *config); +bool pmSourceMagnitudes (pmSource *source, pmPSF *psf, pmSourcePhotometryMode mode); +double pmSourceCrossProduct(const pmSource *Mi, const pmSource *Mj, const bool unweighted_sum); +double pmSourceCrossWeight(const pmSource *Mi, const pmSource *Mj, const bool unweighted_sum); +bool pmSourcePixelWeight (float *pixWeight, pmModel *model, psImage *image, psImage *mask); +bool pmSourceChisq (pmModel *model, psImage *image, psImage *mask, psImage *weight); +pmModel *pmSourceGetModel (bool *isPSF, const pmSource *source); + +double pmSourceWeight(const pmSource *Mi, int term, const bool unweighted_sum); + +/// @} +# endif /* PM_SOURCE_PHOTOMETRY_H */ Index: /branches/rel-1-1/psModules/src/objects/pmSourcePlotMoments.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePlotMoments.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePlotMoments.c (revision 12167) @@ -0,0 +1,163 @@ +/** @file pmSourcePlot.c + * + * This file contains functions to write source plots + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-25 03:11:54 $ + * + * Copyright 2006 IfA, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAview.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmSourcePlots.h" +#include "pmKapaPlots.h" + +// this variable is defined in psmodules.h if ohana-config is found +# if (HAVE_KAPA) + # include + + // plot the sx, sy moments plane (faint and bright sources) + bool pmSourcePlotMoments (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + + Graphdata graphdata; + KapaSection section; + + psLogMsg ("psphot", 3, "creating moments plot"); + + // find the currently selected readout + pmReadout *readout = pmFPAfileThisReadout (config->files, view, "PSPHOT.INPUT"); + + psArray *sources = psMetadataLookupPtr (NULL, readout->analysis, "PSPHOT.SOURCES"); + if (sources == NULL) + return false; + + int kapa = pmKapaOpen (true); + if (kapa == -1) { + psError(PS_ERR_UNKNOWN, true, "failure to open kapa"); + return false; + } + + // moments plot subplots are square + int DX = 1000; + int dx = DX / layout->nX; + int dy = dx; + int DY = dy * layout->nY; + + // XXX make the aspect-ratio match the image + if (layout->i == 0) { + KapaResize (kapa, DX, DY); + } + + KapaInitGraph (&graphdata); + section.dx = dx / (float) DX; + section.dy = dy / (float) DY; + section.x = layout->iX * section.dx; + section.y = layout->iY * section.dy; + section.name = NULL; + psStringAppend (§ion.name, "a%d", layout->i); + KapaSetSection (kapa, §ion); + psFree (section.name); + + // examine sources to set data range + graphdata.xmin = -0.05; + graphdata.ymin = -0.05; + graphdata.xmax = +2.05; + graphdata.ymax = +2.05; + KapaSetLimits (kapa, &graphdata); + + KapaSetFont (kapa, "helvetica", 14); + KapaBox (kapa, &graphdata); + KapaSendLabel (kapa, "&ss&h_x| (pixels)", KAPA_LABEL_XM); + KapaSendLabel (kapa, "&ss&h_y| (pixels)", KAPA_LABEL_YM); + + psVector *xBright = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + psVector *yBright = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + psVector *xFaint = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + psVector *yFaint = psVectorAllocEmpty (sources->n, PS_TYPE_F32); + + // construct the vectors + int nB = 0; + int nF = 0; + for (int i = 0; i < sources->n; i++) { + pmSource *source = sources->data[i]; + if (source->moments == NULL) + continue; + + xFaint->data.F32[nF] = source->moments->Sx; + yFaint->data.F32[nF] = source->moments->Sy; + nF++; + + // XXX make this a user-defined cutoff + if (source->moments->SN < 50) + continue; + + xBright->data.F32[nB] = source->moments->Sx; + yBright->data.F32[nB] = source->moments->Sy; + nB++; + } + xFaint->n = nF; + yFaint->n = nF; + + xBright->n = nB; + yBright->n = nB; + + graphdata.color = KapaColorByName ("black"); + graphdata.ptype = 0; + graphdata.size = 0.3; + graphdata.style = 2; + KapaPrepPlot (kapa, nF, &graphdata); + KapaPlotVector (kapa, nF, xFaint->data.F32); + KapaPlotVector (kapa, nF, yFaint->data.F32); + + graphdata.color = KapaColorByName ("red"); + graphdata.ptype = 2; + graphdata.size = 0.5; + graphdata.style = 2; + KapaPrepPlot (kapa, nB, &graphdata); + KapaPlotVector (kapa, nB, xBright->data.F32); + KapaPlotVector (kapa, nB, yBright->data.F32); + + if (layout->i == layout->nTotal - 1) { + psLogMsg ("psphot", 3, "saving plot to %s", file->filename); + KapaPNG (kapa, file->filename); + } + + psFree (xBright); + psFree (yBright); + psFree (xFaint); + psFree (yFaint); + + return true; +} + + +# else + + bool pmSourcePlotMoments (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + psLogMsg ("psphot", 3, "skipping moments plot"); + return true; +} + +# endif Index: /branches/rel-1-1/psModules/src/objects/pmSourcePlotPSFModel.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePlotPSFModel.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePlotPSFModel.c (revision 12167) @@ -0,0 +1,229 @@ +/** @file pmSourcePlot.c + * + * This file contains functions to write source plots + * + * @author EAM, IfA + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-25 03:11:54 $ + * + * Copyright 2006 IfA, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAview.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmGrowthCurve.h" +#include "pmModel.h" +#include "pmPSF.h" +#include "pmSource.h" +#include "pmSourcePlots.h" +#include "pmKapaPlots.h" + +// this variable is defined in psmodules.h if ohana-config is found +# if (HAVE_KAPA) + # include + + // plot the sx, sy, sxy as vector field, + // plot the PSF measured sx, sy, sxy as vector field + // pull the sources from the config / file? + bool pmSourcePlotPSFModel (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + + Graphdata graphdata; + KapaSection section; + + psLogMsg ("psphot", 3, "creating psf model plot"); + + // find the currently selected readout + pmReadout *readout = pmFPAfileThisReadout (config->files, view, "PSPHOT.INPUT"); + + psArray *sources = psMetadataLookupPtr (NULL, readout->analysis, "PSPHOT.SOURCES"); + if (sources == NULL) + return false; + + int kapa = pmKapaOpen (true); + if (kapa == -1) { + psError(PS_ERR_UNKNOWN, true, "failure to open kapa"); + return false; + } + + int DX = 1000; + float dx = DX / layout->nX; + float dy = dx * layout->aspectRatio; + int DY = dy * layout->nY; + + // XXX make the aspect-ratio match the image + if (layout->i == 0) { + KapaResize (kapa, DX, DY); + } + + KapaInitGraph (&graphdata); + section.dx = dx / DX; + section.dy = dy / DY; + section.x = layout->iX * section.dx; + section.y = layout->iY * section.dy; + section.name = NULL; + psStringAppend (§ion.name, "a%d", layout->i); + KapaSetSection (kapa, §ion); + psFree (section.name); + + psVector *xMNT = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + psVector *yMNT = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + psVector *xPSF = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + psVector *yPSF = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + psVector *xMIN = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + psVector *yMIN = psVectorAllocEmpty (2*sources->n, PS_TYPE_F32); + + // construct the plot vectors + int nMNT = 0; + int nPSF = 0; + int nMIN = 0; + dx = 0; + dy = 0; + float scale = 10; + for (int i = 0; i < sources->n; i++) { + pmSource *source = sources->data[i]; + if (source->moments == NULL) + continue; + if (source->moments->SN < 25) + continue; + if (source->type != PM_SOURCE_TYPE_STAR) + continue; + + pmModel *model = source->modelPSF; + if (model == NULL) + continue; + + psF32 *PAR = model->params->data.F32; + + psEllipseMoments moments; + moments.x2 = source->moments->Sx; + moments.y2 = source->moments->Sy; + moments.xy = source->moments->Sxy; + + psEllipseShape shape; + shape.sx = PAR[PM_PAR_SXX] / sqrt(2.0); + shape.sy = PAR[PM_PAR_SYY] / sqrt(2.0); + shape.sxy = PAR[PM_PAR_SXY]; + + // force the axis ratio to be < 20.0 + psEllipseAxes axes_mnt = psEllipseMomentsToAxes (moments, 20.0); + psEllipseAxes axes_psf = psEllipseShapeToAxes (shape, 20.0); + + // moments major axis + dx = scale*axes_mnt.major*cos(axes_mnt.theta); + dy = scale*axes_mnt.major*sin(axes_mnt.theta); + xMNT->data.F32[nMNT] = PAR[PM_PAR_XPOS] - dx; + yMNT->data.F32[nMNT] = PAR[PM_PAR_YPOS] - dy; + nMNT++; + xMNT->data.F32[nMNT] = PAR[PM_PAR_XPOS] + dx; + yMNT->data.F32[nMNT] = PAR[PM_PAR_YPOS] + dy; + nMNT++; + + // psf major axis + dx = scale*axes_psf.major*cos(axes_psf.theta); + dy = scale*axes_psf.major*sin(axes_psf.theta); + xPSF->data.F32[nPSF] = PAR[PM_PAR_XPOS] - dx; + yPSF->data.F32[nPSF] = PAR[PM_PAR_YPOS] - dy; + nPSF++; + xPSF->data.F32[nPSF] = PAR[PM_PAR_XPOS] + dx; + yPSF->data.F32[nPSF] = PAR[PM_PAR_YPOS] + dy; + nPSF++; + + // minor axis (to show size) + dy = +scale*axes_psf.minor*cos(axes_psf.theta); + dx = -scale*axes_psf.minor*sin(axes_psf.theta); + xMIN->data.F32[nMIN] = PAR[PM_PAR_XPOS] - dx; + yMIN->data.F32[nMIN] = PAR[PM_PAR_YPOS] - dy; + nMIN++; + xMIN->data.F32[nMIN] = PAR[PM_PAR_XPOS] + dx; + yMIN->data.F32[nMIN] = PAR[PM_PAR_YPOS] + dy; + nMIN++; + + graphdata.xmin = PS_MIN(graphdata.xmin, PAR[PM_PAR_XPOS]); + graphdata.xmax = PS_MAX(graphdata.xmax, PAR[PM_PAR_XPOS]); + graphdata.ymin = PS_MIN(graphdata.ymin, PAR[PM_PAR_YPOS]); + graphdata.ymax = PS_MAX(graphdata.ymax, PAR[PM_PAR_YPOS]); + } + xMNT->n = yMNT->n = nMNT; + xPSF->n = yPSF->n = nPSF; + xMIN->n = yMIN->n = nMIN; + + float range; + range = graphdata.xmax - graphdata.xmin; + graphdata.xmax += 0.05*range; + graphdata.xmin -= 0.05*range; + range = graphdata.ymax - graphdata.ymin; + graphdata.ymax += 0.05*range; + graphdata.ymin -= 0.05*range; + + // XXX set the plot range to match the image + KapaSetLimits (kapa, &graphdata); + + KapaSetFont (kapa, "helvetica", 14); + KapaBox (kapa, &graphdata); + KapaSendLabel (kapa, "x (pixels)", KAPA_LABEL_XM); + KapaSendLabel (kapa, "y (pixels)", KAPA_LABEL_YM); + KapaSendLabel (kapa, "vector is major axis (scaled by 20) : black are moments, blue are psf model, red is psf minor axis", KAPA_LABEL_XP); + + graphdata.color = KapaColorByName ("black"); + graphdata.ptype = 100; + graphdata.size = 0.3; + graphdata.style = 2; + KapaPrepPlot (kapa, nMNT, &graphdata); + KapaPlotVector (kapa, nMNT, xMNT->data.F32); + KapaPlotVector (kapa, nMNT, yMNT->data.F32); + + graphdata.color = KapaColorByName ("blue"); + graphdata.ptype = 100; + graphdata.size = 0.5; + graphdata.style = 2; + KapaPrepPlot (kapa, nPSF, &graphdata); + KapaPlotVector (kapa, nPSF, xPSF->data.F32); + KapaPlotVector (kapa, nPSF, yPSF->data.F32); + + graphdata.color = KapaColorByName ("red"); + graphdata.ptype = 100; + graphdata.size = 0.5; + graphdata.style = 2; + KapaPrepPlot (kapa, nMIN, &graphdata); + KapaPlotVector (kapa, nMIN, xMIN->data.F32); + KapaPlotVector (kapa, nMIN, yMIN->data.F32); + + if (layout->i == layout->nTotal - 1) { + psLogMsg ("psphot", 3, "saving plot to %s", file->filename); + KapaPNG (kapa, file->filename); + } + + psFree (xMNT); + psFree (yMNT); + psFree (xPSF); + psFree (yPSF); + psFree (xMIN); + psFree (yMIN); + + return true; +} + +# else + + bool pmSourcePlotPSFModel (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + psLogMsg ("psphot", 3, "skipping psf model plot"); + return true; +} + +# endif Index: /branches/rel-1-1/psModules/src/objects/pmSourcePlots.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePlots.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePlots.c (revision 12167) @@ -0,0 +1,160 @@ +/** @file pmSourcePlot.c + * + * This file contains functions to write source plots + * + * @author EAM, IfA + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-12-23 04:00:30 $ + * + * Copyright 2006 IfA, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include + +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAfile.h" +#include "pmFPAview.h" +#include "pmSourcePlots.h" + +// this function is called for the specific plotting program at the fileLevel +// fileLevel must be >= chip +bool pmFPAviewWriteSourcePlot(const pmFPAview *view, pmFPAfile *file, pmConfig *config) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + if ((view->readout != -1) || (view->cell != -1)) { + psError(PS_ERR_UNKNOWN, true, "source plots must have fileLevel >= chip"); + return false; + } + + pmFPA *fpa = file->fpa; + + if (view->chip == -1) { + pmFPAWriteSourcePlot (fpa, view, file, config, NULL); + return true; + } + + pmChipWriteSourcePlot (fpa, view, file, config, NULL); + return true; +} + +// read in all chip-level SourcePlot files for this FPA +bool pmFPAWriteSourcePlot (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + // if the layout is not defined, this level is the top level being plotted + // determine the plot layout + if (!layout) { + layout = pmSourcePlotLayoutAlloc (); + // XXX temporary hardwired values for essence? + layout->nX = 4; + layout->nY = 2; + layout->aspectRatio = 2.0; + // count the number of chips and their layout (xrange, yrange, axis ratio) + for (int i = 0; i < fpa->chips->n; i++) { + pmChip *chip = fpa->chips->data[i]; + if (chip->data_exists) { + layout->nTotal ++; + } + } + } + + pmFPAview *chipView = pmFPAviewAlloc(0); + + while (pmFPAviewNextChip (chipView, fpa, 1) != NULL) { + pmChipWriteSourcePlot (fpa, chipView, file, config, layout); + layout->i ++; + layout->iX ++; + if (layout->iX == layout->nX) { + layout->iY++; + layout->iX = 0; + } + } + psFree (chipView); + psFree (layout); + return true; +} + +// read in all cell-level SourcePlot files for this chip +bool pmChipWriteSourcePlot (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout) +{ + PS_ASSERT_PTR_NON_NULL(view, false); + PS_ASSERT_PTR_NON_NULL(file, false); + + // if the layout is not defined, this level is the top level being plotted + // determine the plot layout (always single chip) + if (!layout) { + layout = pmSourcePlotLayoutAlloc (); + layout->nTotal = 1; + } else { + psMemIncrRefCounter (layout); + } + + pmFPAview *newView = pmFPAviewAlloc(0); + newView->chip = view->chip; + + while (pmFPAviewNextCell (newView, fpa, 1) != NULL) { + while (pmFPAviewNextReadout (newView, fpa, 1) != NULL) { + + if (!strcmp (file->name, "SOURCE.PLOT.PSFMODEL")) { + pmSourcePlotPSFModel (newView, file, config, layout); + } + if (!strcmp (file->name, "SOURCE.PLOT.MOMENTS")) { + pmSourcePlotMoments (newView, file, config, layout); + } + } + } + psFree (newView); + psFree (layout); + return true; +} + +static void pmSourcePlotLayoutFree(pmSourcePlotLayout *layout) +{ + return; +} + +pmSourcePlotLayout *pmSourcePlotLayoutAlloc() +{ + pmSourcePlotLayout *layout = (pmSourcePlotLayout *)psAlloc(sizeof(pmSourcePlotLayout)); + psMemSetDeallocator(layout, (psFreeFunc)pmSourcePlotLayoutFree ); + + layout->nX = layout->nY = layout->nTotal = 0; + layout->iX = layout->iY = layout->i = 0; + layout->aspectRatio = 1.0; + return (layout); +} + +/* we have three types of plots to produce (maybe more?) + * for each plot, we need to supply the following information: + * - what are overall dimensions? + * - what is the relative position of this element? + * - what are the dimensions of this element? + * - create a new page for this element? + + * the answers to these questions come from slightly different locations + * for the different types of plots: + + * 1) focal-plane layout based plots: + * - dimensions depend on fileLevel + + * 2) multi-row plots: + * - dimensions depend on total number of rows + + * 2) multi-page plots: + * - dimensions depend on total number of rows + */ + Index: /branches/rel-1-1/psModules/src/objects/pmSourcePlots.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourcePlots.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourcePlots.h (revision 12167) @@ -0,0 +1,40 @@ +/* @file pmSourcePlots.h + * @brief functions to create plots illustrating source properties + * + * @author EAM, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_SOURCE_PLOTS_H +#define PM_SOURCE_PLOTS_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +typedef struct +{ + int nX; + int nY; + int nTotal; + int iX; + int iY; + int i; + float aspectRatio; +} +pmSourcePlotLayout; + +// typedef bool (*pmSourcePlotFunction)(pmConfig *config, pmFPAview *view, pmSourcePlotLayout *layout); + +pmSourcePlotLayout *pmSourcePlotLayoutAlloc(); + +bool pmFPAviewWriteSourcePlot(const pmFPAview *view, pmFPAfile *file, pmConfig *config); +bool pmFPAWriteSourcePlot (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout); +bool pmChipWriteSourcePlot (pmFPA *fpa, const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout); +bool pmSourcePlotPSFModel (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout); +bool pmSourcePlotMoments (const pmFPAview *view, pmFPAfile *file, pmConfig *config, pmSourcePlotLayout *layout); + +/// @} +#endif // PM_SOURCE_PLOTS_H Index: /branches/rel-1-1/psModules/src/objects/pmSourceSky.c =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceSky.c (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceSky.c (revision 12167) @@ -0,0 +1,141 @@ +/** @file pmSourceSky.c + * + * Functions to measure the local sky and sky variance for sources on images + * + * @author GLG, MHPCC + * @author EAM, IfA: significant modifications. + * + * @version $Revision: 1.10 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-02-13 03:14:42 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include +#include "pmHDU.h" +#include "pmFPA.h" +#include "pmFPAMaskWeight.h" +#include "pmPeaks.h" +#include "pmMoments.h" +#include "pmModel.h" +#include "pmSource.h" +#include "pmSourceSky.h" + +/****************************************************************************** +pmSource *pmSourceLocalSky(source, statsOptions, Radius): this +routine creates a new pmSource.moments element if needed and sets pmSource.pmMoments.sky + +The sky value is set from the pixels in the square annulus surrounding the +peak pixel. + +The source.pixels and source.mask must already exist +*****************************************************************************/ + +bool pmSourceLocalSky( + pmSource *source, + psStatsOptions statsOptions, + psF32 Radius) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_IMAGE_NON_NULL(source->pixels, false); + PS_ASSERT_IMAGE_NON_NULL(source->mask, false); + PS_ASSERT_PTR_NON_NULL(source->peak, false); + PS_ASSERT_INT_POSITIVE(Radius, false); + PS_ASSERT_INT_NONNEGATIVE(Radius, false); + + psStatsOptions statistic = psStatsSingleOption(statsOptions); + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Multiple or no statistics specified: %x\n", statsOptions); + return NULL; + } + + psImage *image = source->pixels; + psImage *mask = source->mask; + pmPeak *peak = source->peak; + psRegion srcRegion; + + srcRegion = psRegionForSquare(peak->x, peak->y, Radius); + srcRegion = psRegionForImage(mask, srcRegion); + + psImageMaskRegion(mask, srcRegion, "OR", PM_MASK_MARK); + psStats *myStats = psStatsAlloc(statsOptions); + if (!psImageStats(myStats, image, mask, 0xff)) { + psError(PS_ERR_UNKNOWN, false, "Unable to get image statistics.\n"); + psFree(myStats); + return false; + } + psImageMaskRegion(mask, srcRegion, "AND", PS_NOT_U8(PM_MASK_MARK)); + double value = psStatsGetValue(myStats, statistic); + psFree(myStats); + + if (isnan(value)) { + psTrace("psModules.objects", 3, "---- %s(false) end ----\n", __func__); + return(false); + } + if (source->moments == NULL) { + source->moments = pmMomentsAlloc(); + } + source->moments->Sky = value; + psTrace("psModules.objects", 3, "---- %s(true) end ----\n", __func__); + return (true); +} + +// A complementary function to pmSourceLocalSky: calculate the local median variance +bool pmSourceLocalSkyVariance( + pmSource *source, + psStatsOptions statsOptions, + psF32 Radius) +{ + psTrace("psModules.objects", 3, "---- %s() begin ----\n", __func__); + PS_ASSERT_PTR_NON_NULL(source, false); + PS_ASSERT_IMAGE_NON_NULL(source->weight, false); + PS_ASSERT_IMAGE_NON_NULL(source->mask, false); + PS_ASSERT_PTR_NON_NULL(source->peak, false); + PS_ASSERT_INT_POSITIVE(Radius, false); + PS_ASSERT_INT_NONNEGATIVE(Radius, false); + + psStatsOptions statistic = psStatsSingleOption(statsOptions); + if (statistic == 0) { + psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Multiple or no statistics specified: %x\n", statsOptions); + return NULL; + } + + psImage *image = source->weight; + psImage *mask = source->mask; + pmPeak *peak = source->peak; + psRegion srcRegion; + + srcRegion = psRegionForSquare(peak->x, peak->y, Radius); + srcRegion = psRegionForImage(mask, srcRegion); + + psImageMaskRegion(mask, srcRegion, "OR", PM_MASK_MARK); + psStats *myStats = psStatsAlloc(statsOptions); + if (!psImageStats(myStats, image, mask, 0xff)) { + psError(PS_ERR_UNKNOWN, false, "Unable to get image statistics.\n"); + psFree(myStats); + return false; + } + psImageMaskRegion(mask, srcRegion, "AND", PS_NOT_U8(PM_MASK_MARK)); + double value = psStatsGetValue(myStats, statistic); + psFree(myStats); + + if (isnan(value)) { + psTrace("psModules.objects", 3, "---- %s(false) end ----\n", __func__); + return(false); + } + if (source->moments == NULL) { + source->moments = pmMomentsAlloc(); + } + source->moments->dSky = value; + psTrace("psModules.objects", 3, "---- %s(true) end ----\n", __func__); + return (true); +} Index: /branches/rel-1-1/psModules/src/objects/pmSourceSky.h =================================================================== --- /branches/rel-1-1/psModules/src/objects/pmSourceSky.h (revision 12167) +++ /branches/rel-1-1/psModules/src/objects/pmSourceSky.h (revision 12167) @@ -0,0 +1,43 @@ +/* @file pmSourceSky.h + * @author EAM, IfA; GLG, MHPCC + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 02:54:15 $ + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +# ifndef PM_SOURCE_SKY_H +# define PM_SOURCE_SKY_H + +/// @addtogroup Objects Object Detection / Analysis Functions +/// @{ + +/** pmSourceLocalSky() + * + * Measure the local sky in the vicinity of the given source. The Radius + * defines the square aperture in which the moments will be measured. This + * function assumes the source pixels have been defined, and that the value of + * Radius here is smaller than the value of Radius used to define the pixels. The + * annular region not contained within the radius defined here is used to measure + * the local background in the vicinity of the source. The local background + * measurement uses the specified statistic passed in via the statsOptions entry. + * This function allocates the pmMoments structure. The resulting sky is used to + * set the value of the pmMoments.sky element of the provided pmSource structure. + * + */ +bool pmSourceLocalSky( + pmSource *source, ///< The input image (float) + psStatsOptions statsOptions, ///< The statistic used in calculating the background sky + float Radius ///< The inner radius of the square annulus to exclude +); + + +// A complementary function to pmSourceLocalSky: calculate the local sky variance +bool pmSourceLocalSkyVariance( + pmSource *source, ///< The input image (float) + psStatsOptions statsOptions, ///< The statistic used in calculating the background sky + float Radius ///< The inner radius of the square annulus to exclude +); + +/// @} +# endif /* PM_SOURCE_PHOTOMETRY_H */ Index: /branches/rel-1-1/psModules/src/psmodules.h =================================================================== --- /branches/rel-1-1/psModules/src/psmodules.h (revision 12167) +++ /branches/rel-1-1/psModules/src/psmodules.h (revision 12167) @@ -0,0 +1,87 @@ +#ifndef PS_MODULES_H +#define PS_MODULES_H + +#include + +// the following headers are from psModule:extras +#include +#include +#include +#include + +// the following headers are from psModule:config +#include +#include +#include +#include +#include + +// the following headers are from psModule:concepts +#include +#include +#include +#include +#include + +// the following headers are from psModule:camera +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +// the following headers are from psModule:detrend +#include +#include +#include +#include +#include +#include +#include +#include +// #include + +// the following headers are from psModule:astrom +#include +#include +#include + +// the following headers are from psModule:imcombine +#include +//#include +#include + +// the following headers are from psModule:objects +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#endif Index: /branches/rel-1-1/psModules/src/sky/pmSkyCell.h =================================================================== --- /branches/rel-1-1/psModules/src/sky/pmSkyCell.h (revision 12167) +++ /branches/rel-1-1/psModules/src/sky/pmSkyCell.h (revision 12167) @@ -0,0 +1,18 @@ +#ifndef PM_SKY_CELL_H +#define PM_SKY_CELL_H + +/// Structure representing a sky cell +typedef struct +{ + psImage *image; // Image; type F32 + psImage *mask; // Mask image; type MASK_TYPE + psImage *weight; // Weight map; type F32 + psPlaneTransform *toTPA; // Transformation from pixels to tangent plane + psPlaneTransform *fromTPA; // Transformation from tangent plane to pixels + psProjection *toSky; // Projection to the sky +} +pmSkyCell; + + + +#endif Index: /branches/rel-1-1/psModules/src/sky/pmWarp.h =================================================================== --- /branches/rel-1-1/psModules/src/sky/pmWarp.h (revision 12167) +++ /branches/rel-1-1/psModules/src/sky/pmWarp.h (revision 12167) @@ -0,0 +1,24 @@ +#ifndef PM_WARP_MAP_H +#define PM_WARP_MAP_H + +// a single pswarpMap converts coordinates from one image to a second image +// the linear model is only valid over a limited range of pixels +typedef struct +{ + double Xo, Xx, Xy; + double Yo, Yx, Yy; + int xo; + int yo; +} +pswarpMap; + +// the pswarpMapGrid carries a collection of pswarpMag structures representing the +// local value of the pswarpMap at different locations in the image. +typedef struct +{ + pswarpMap ***maps; + int nXpts, nYpts; // number of x,y samples in the grid + int nXpix, nYpix; // x,y spacing in src image pixels of grid samples + int xMin, yMin; // coordinate of first grid sample +} +pswarpMapGrid; Index: /branches/rel-1-1/psModules/src/sky/pmWarpMap.c =================================================================== --- /branches/rel-1-1/psModules/src/sky/pmWarpMap.c (revision 12167) +++ /branches/rel-1-1/psModules/src/sky/pmWarpMap.c (revision 12167) @@ -0,0 +1,241 @@ +#include +#include +#include + +#include "pmWarpMap.h" + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Allocators and deallocators +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +static void warpMapFree(pswarpMap *map) +{ + // No operations required; this function exists merely to identify a pmWarpMap + return; +} + +pswarpMap *pswarpMapAlloc(void) +{ + pswarpMap *map = (pswarpMap *) psAlloc (sizeof(pswarpMap)); + psMemSetDeallocator(map, (psFreeFunc)warpMapFree); + + map->Xo = map->Xx = map->Xy = NAN; + map->Yo = map->Yx = map->Yy = NAN; + map->xo = map->yo = NAN; + + return map; +} + + +static void warpMapGridFree(pswarpMapGrid *grid) +{ + if (!grid->maps) { + // Nothing to free + return; + } + + for (int i = 0; i < grid->nXpts; i++) { + for (int j = 0; j < grid->nYpts; j++) { + psFree(grid->maps[i][j]); + } + psFree(grid->maps[i]); + } + psFree (grid->maps); + return; +} + +pswarpMapGrid *pswarpMapGridAlloc(int nXpts, int nYpts) +{ + PS_ASSERT_INT_POSITIVE(nXpts, NULL); + PS_ASSERT_INT_POSITIVE(nYpts, NULL); + + pswarpMapGrid *grid = (pswarpMapGrid *) psAlloc(sizeof(pswarpMapGrid)); + psMemSetDeallocator(grid, (psFreeFunc)warpMapGridFree); + + grid->maps = psAlloc(nXpts*sizeof(void **)); + for (int i = 0; i < nXpts; i++) { + grid->maps[i] = psAlloc(nYpts*sizeof(void *)); + for (int j = 0; j < nYpts; j++) { + grid->maps[i][j] = pswarpMapAlloc(); + } + } + grid->nXpts = nXpts; + grid->nYpts = nYpts; + + grid->nXpix = 0; + grid->nYpix = 0; + + return grid; +} + +////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Operations +////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +// XXX for the moment, ignore readout->cell->chip offsets +pswarpMapGrid *pswarpMapGridFromImage(pmSkyCell *dest, const pmReadout *src, int nXpix, int nYpix) +{ + PS_ASSERT_PTR_NON_NULL(dest, NULL); + PS_ASSERT_PTR_NON_NULL(src, NULL); + PS_ASSERT_IMAGE_NON_NULL(src->image, NULL); + PS_ASSERT_INT_NON_NEGATIVE(nXpix, NULL); + PS_ASSERT_INT_NON_NEGATIVE(nYpix, NULL); + + // split the difference of the remainder + int xMin = 0.5 * (src->image->numCols % nXpix); // Minimum in x + int yMin = 0.5 * (src->image->numRows % nYpix); // Minimum in y + + int nXpts = src->image->numCols / nXpix; // Number of points in x + if (src->image->numCols % nXpix == 0) { + nXpts++; + } + int nYpts = src->image->numRows / nYpix; // Number of points in y + if (src->image->numRows % nYpix == 0) { + nYpts++; + } + + pmWarpMapGrid *grid = pmWarpMapGridAlloc(nXpts, nYpts); + grid->nXpix = nXpix; + grid->nYpix = nYpix; + grid->xMin = xMin; + grid->yMin = yMin; + + for (int ni = 0, i = xMin; ni < nXpts; i += nXpix, ni++) { + for (int nj = 0, j = yMin; nj < nYpts; j += nYpix, nj++) { + pmWarpMapSetLocalModel(grid->maps[ni][nj], dest, src, i, j); + } + } + + return grid; +} + +bool pmWarpMapGridSetGrid(const pmWarpMapGrid *grid, int ix, int iy, int *gridX, int *gridY) +{ + *gridX = (ix - grid->xMin + 0.5*grid->nXpix) / grid->nXpix; + *gridY = (iy - grid->yMin + 0.5*grid->nYpix) / grid->nYpix; + + return true; +} + +bool pmWarpMapGridNextGrid(const pmWarpMapGrid *grid, int gridX, int gridY, int *nextX, int *nextY) +{ + *nextX = gridX*grid->nXpix + grid->xMin + 0.5*grid->nXpix; + *nextY = gridY*grid->nYpix + grid->yMin + 0.5*grid->nYpix; + + return true; +} + +// measure the max error accumulated in appling one grid point to its neighbors +double pmWarpMapGridMaxError(const pmWarpMapGrid *grid) +{ + double maxError = 0; // Maximum error + + for (int i = 0; i < grid->nXpts - 1; i++) { + for (int j = 0; j < grid->nYpts - 1; j++) { + // measure the output coordinates for the next grid position using the current grid map + // compare with the coordinates measured using the next grid map + double xRaw, yRaw; // Raw position + double xRef, yRef; // Reference position + + pmWarpMapApply(&xRaw, &yRaw, grid->maps[i][j], grid->maps[i][j]->xo + grid->nXpix, + grid->maps[i][j]->yo); + pmWarpMapApply(&xRef, &yRef, grid->maps[i+1][j], grid->maps[i][j]->xo + grid->nXpix, + grid->maps[i][j]->yo); + + double posError = hypot(xRaw-xRef, yRaw-yRef); + maxError = PS_MAX(maxError, posError); + } + } + + return maxError; +} + +bool pmWarpMapApply(double *outX, double *outY, const pmWarpMap *map, double inX, double inY) +{ + *outX = map->Xo + map->Xx*inX + map->Xy*inY; + *outY = map->Yo + map->Yx*inX + map->Yy*inY; + + return true; +} + +bool pmWarpMapSetLocalModel(pmWarpMap *map, const pmSkyCell *dest, const pmReadout *src, int ix, int iy) +{ + PS_ASSERT_PTR_NON_NULL(map, false); + PS_ASSERT_PTR_NON_NULL(dest, false); + PS_ASSERT_PTR_NON_NULL(dest->toSky, false); + PS_ASSERT_PTR_NON_NULL(dest->fromTPA, false); + PS_ASSERT_PTR_NON_NULL(src, false); + pmCell *cell = src->parent; // Parent cell of source + PS_ASSERT_PTR_NON_NULL(cell, false); + pmChip *chip = cell->parent; // Parent chip of source + PS_ASSERT_PTR_NON_NULL(chip, false); + PS_ASSERT_PTR_NON_NULL(chip->toFPA, false); + pmFPA *fpa = chip->parent; // Parent FPA of source + PS_ASSERT_PTR_NON_NULL(fpa, false); + PS_ASSERT_PTR_NON_NULL(fpa->toTPA, false); + PS_ASSERT_PTR_NON_NULL(fpa->toSky, false); + PS_ASSERT_INT_NON_NEGATIVE(ix, false); + PS_ASSERT_INT_NON_NEGATIVE(iy, false); + + // These will get allocated in the course of the calculations; may as well allocate them here + // XXX save these as static for speed? + // Alternatively, pass in a buffer containing these pre-allocated. + psPlane *offset = psPlaneAlloc(); // Position offset from the main position of interest (ix,iy) + psPlane *FP = psPlaneAlloc(); // Position in the focal plane + psPlane *TP = psPlaneAlloc(); // Position in the tangent plane + psSphere *sky = psSphereAlloc(); // Position on the sky + + // XXX need to include readout->cell->chip offsets + // --> Look up CELL.X0, CELL.Y0 in concepts + // --> Use readout->col0, readout->row0 + + // V(0,0) position + offset->x = ix; + offset->y = iy; + psPlaneTransformApply(FP, chip->toFPA, offset); + psPlaneTransformApply (TP, fpa->toTPA, FP); + psDeproject(sky, TP, fpa->toSky); + psProject(TP, sky, dest->toSky); + psPlane *V00 = psPlaneTransformApply(NULL, dest->fromTPA, TP); // Coordinates at the position of interest + + // V(1,0) position + offset->x = ix + 1; + offset->y = iy; + psPlaneTransformApply(FP, chipSrc->toFPA, offset); + psPlaneTransformApply(TP, fpaSrc->toTPA, FP); + psDeproject(sky, TP, fpaSrc->toSky); + psProject(TP, sky, dest->toSky); + psPlane *V10 = psPlaneTransformApply(NULL, dest->fromTPA, TP); // Coordinates at position + (1,0) + + // V(0,1) position + offset->x = ix; + offset->y = iy + 1; + psPlaneTransformApply(FP, chipSrc->toFPA, offset); + psPlaneTransformApply(TP, fpaSrc->toTPA, FP); + psDeproject(sky, TP, fpaSrc->toSky); + psProject(TP, sky, fpaDest->toSky); + psPlane *V01 = psPlaneTransformApply(NULL, dest->fromTPA, TP); // Coordinates at position + (0,1) + + psFree(offset); + psFree(FP); + psFree(TP); + psFree(sky); + + // Generate local linear transformation + map->Xx = V10->x - V00->x; + map->Xy = V01->x - V00->x; + map->Xo = V00->x - map->Xx * ix - map->Xy * iy; + + map->Yx = V10->y - V00->y; + map->Yy = V01->y - V00->y; + map->Yo = V00->y - map->Yx * ix - map->Yy * iy; + + map->xo = ix; + map->yo = iy; + + psFree(V00); + psFree(V10); + psFree(V01); + + return true; +} Index: /branches/rel-1-1/psModules/src/sky/pmWarpMap.h =================================================================== --- /branches/rel-1-1/psModules/src/sky/pmWarpMap.h (revision 12167) +++ /branches/rel-1-1/psModules/src/sky/pmWarpMap.h (revision 12167) @@ -0,0 +1,88 @@ +/* @file pmWarpMap.h + * @brief Warp Map Manipulation functions + * + * @author Paul Price, IfA + * @author Eugene Magnier, IfA + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2007-01-24 01:05:41 $ + * Copyright 2005-2006 Institute for Astronomy, University of Hawaii + */ + +#ifndef PM_WARP_MAP_H +#define PM_WARP_MAP_H + +/// @addtogroup Sky +/// @{ + +// a single pmWarpMap converts coordinates from one image to a second image +// the linear model is only valid over a limited range of pixels +typedef struct +{ + double Xo, Xx, Xy; // Transformation coefficients for x + double Yo, Yx, Yy; // Transformation coefficients for y + int xo, yo; // Origin +} +pmWarpMap; + +// the pmWarpMapGrid carries a collection of pmWarpMag structures representing the +// local value of the pmWarpMap at different locations in the image. +typedef struct +{ + pmWarpMap ***maps; // 2D image of pointers to maps + int nXpts, nYpts; // number of x,y samples in the grid + int nXpix, nYpix; // x,y spacing in src image pixels of grid samples + int xMin, yMin; // coordinate of first grid sample +} +pmWarpMapGrid; + +/// Allocator +pmWarpMap *pmWarpMapAlloc(void); + +/// Allocator +pmWarpMapGrid *pmWarpMapGridAlloc(int Nx, // Number of grid points in x + int Ny // Number of grid points in y + ); + + +// Operations follow + + +// construct a grid with superpixel spacing of nXpix, nYpix +pmWarpMapGrid *pmWarpMapGridFromImage(pmSkyCell *dest, // Destination sky cell + const pmReadout *src, // Source readout + int nXpix, // Number of pixels in x + int nYpix // Number of pixels in y + ); + +bool pmWarpMapGridSetGrid(pmWarpMapGrid *grid, + int ix, int iy, + int *gridX, + int *gridY + ); + +bool pmWarpMapGridNextGrid(pmWarpMapGrid *grid, + int gridX, + int gridY, + int *nextX, + int *nextY + ); + +// measure the max error accumulated in appling one grid point to its neighbors +double pmWarpMapGridMaxError(const pmWarpMapGrid *grid + ); + +bool pmWarpMapApply(double *outX, + double *outY, + const pmWarpMap *map, + double inX, + double inY); + +// determine the map for the given pixel from src to dest. pixel is in src coords +bool pmWarpMapSetLocalModel(pmWarpMap *map, + const pmSkyCell *dest, + const pmReadout *src, + int ix, int iy + ); +/// @} +#endif Index: /branches/rel-1-1/psModules/templates/c =================================================================== --- /branches/rel-1-1/psModules/templates/c (revision 12167) +++ /branches/rel-1-1/psModules/templates/c (revision 12167) @@ -0,0 +1,11 @@ +/** @file filename.c + * + * @brief Contains the definitions for ... + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.1.1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2004-09-10 19:01:33 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ Index: /branches/rel-1-1/psModules/templates/h =================================================================== --- /branches/rel-1-1/psModules/templates/h (revision 12167) +++ /branches/rel-1-1/psModules/templates/h (revision 12167) @@ -0,0 +1,13 @@ +/** @file filename.h + * + * @brief Contains the definitions for ... + * + * Detailed Description goes here. + * + * @author Robert DeSonia, MHPCC + * + * @version $Revision: 1.1.1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2004-09-10 19:01:33 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ Index: /branches/rel-1-1/psModules/test/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/.cvsignore (revision 12167) @@ -0,0 +1,15 @@ +.deps +.libs +Makefile +tst_pmFlatField +tst_pmMaskBadPixels +tst_pmNonLinear +tst_pmSubtractBias +temp +Makefile.in +tst_pmObjects01 +tst_pmReadoutCombine +tst_pmSubtractSky +tst_pmImageSubtract +tst_pmImageCombine +tst_pmAstrometry Index: /branches/rel-1-1/psModules/test/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/Makefile.am (revision 12167) @@ -0,0 +1,9 @@ +SUBDIRS = tap pstap $(SRCDIRS) + +TESTS = test.pl + +EXTRA_DIST = test.pl + +CLEANFILES = core core.* *~ + +test: check Index: /branches/rel-1-1/psModules/test/astrom/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/astrom/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/.cvsignore (revision 12167) @@ -0,0 +1,12 @@ +.deps +.libs +Makefile +Makefile.in +temp +tst_pmAstrometry +tst_pmAstrometry01 +tap_pmAstrometryWCS +tap_pmAstrometryWCS_DVO +tap_pmAstrometryWCS_DVO2 +tap_pmAstrometryWCS_DVO3 +tap_pmAstrometryWCS_DVO4 Index: /branches/rel-1-1/psModules/test/astrom/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/astrom/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/Makefile.am (revision 12167) @@ -0,0 +1,24 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSMODULES_LIBS) + +check_PROGRAMS = \ + tap_pmAstrometryWCS \ + tap_pmAstrometryWCS_DVO \ + tap_pmAstrometryWCS_DVO2 \ + tap_pmAstrometryWCS_DVO3 \ + tap_pmAstrometryWCS_DVO4 + +test: check + +tests: $(check_PROGRAMS) + $(top_srcdir)/test/test.pl + Index: /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS.c (revision 12167) @@ -0,0 +1,151 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + plan_tests(33); + + note("pmAstrometryWCS tests"); + + { + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // construct a header with a simple set of WCS values + // convert to pmFPA components and check + + psMetadata *header = psMetadataAlloc(); + + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", "RA---TAN"); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", "DEC--TAN"); + + // center coords (R,D) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", 0.0); + + // center coords (X,Y) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", 0.0); + + // degrees per pixel + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", 1.0/3600.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", 1.0/3600.0); + + // rotation matrix + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", 1.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", 1.0); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (NULL, "test"); + + // toFPA carries pixel scale (microns per pixel) + // toSky carries plate scale (radians per micron) + bool status = pmAstromReadWCS (fpa, chip, header, 10.0); + ok (status, "converted WCS keywords to FPA astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + ok(fpa->toSky->type == PS_PROJ_TAN, "correct projection (TAN)"); + + // make these tests double + ok_float(fpa->toSky->R*PM_DEG_RAD, 0.0, "projection center RA %f", fpa->toSky->R*PM_DEG_RAD); + ok_float(fpa->toSky->R*PM_DEG_RAD, 0.0, "projection center DEC %f", fpa->toSky->R*PM_DEG_RAD); + + ok_float(fpa->toSky->Xs, PM_RAD_DEG/3600.0/10.0, "projection X scale %f", fpa->toSky->Xs); + ok_float(fpa->toSky->Ys, PM_RAD_DEG/3600.0/10.0, "projection X scale %f", fpa->toSky->Ys); + + ok_float(fpa->toTPA->x->coeff[1][0], 1.0, "TP scale (unity): %f", fpa->toTPA->x->coeff[1][0]); + ok_float(fpa->toTPA->y->coeff[0][1], 1.0, "TP scale (unity): %f", fpa->toTPA->x->coeff[1][0]); + + ok_float(chip->toFPA->x->coeff[0][0], 0.0, "ref pixel X: %f", chip->toFPA->x->coeff[0][0]); + ok_float(chip->toFPA->y->coeff[0][0], 0.0, "ref pixel Y: %f", chip->toFPA->y->coeff[0][0]); + + ok_float(chip->toFPA->x->coeff[1][0], 10.0, "CD1_1: %f", chip->toFPA->x->coeff[1][0]); + ok_float(chip->toFPA->x->coeff[0][1], 0.0, "CD1_2: %f", chip->toFPA->x->coeff[0][1]); + ok_float(chip->toFPA->y->coeff[1][0], 0.0, "CD2_1: %f", chip->toFPA->y->coeff[1][0]); + ok_float(chip->toFPA->y->coeff[0][1], 10.0, "CD2_2: %f", chip->toFPA->y->coeff[0][1]); + + psFree (fpa); + psFree (chip); + psFree (header); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); + } + + { + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // construct a header with a simple set of WCS values + // convert to pmFPA components and check + + psMetadata *header = psMetadataAlloc(); + + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", "RA---TAN"); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", "DEC--TAN"); + + // center coords (R,D) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", 0.0); + + // center coords (X,Y) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", 10.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", 10.0); + + // degrees per pixel + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", 1.0/3600.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", 1.0/3600.0); + + // rotation matrix + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", 1.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", 0.0); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", 1.0); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (NULL, "test"); + + // toFPA carries pixel scale (pixels per micron) + // toTPA carries plate scale (microns per arcsecond) + bool status = pmAstromReadWCS (fpa, chip, header, 10.0); + ok (status, "converted WCS keywords to FPA astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + ok(fpa->toSky->type == PS_PROJ_TAN, "correct projection (TAN)"); + + // make these tests double + ok_float(fpa->toSky->R*PM_DEG_RAD, 0.0, "projection center RA %f", fpa->toSky->R*PM_DEG_RAD); + ok_float(fpa->toSky->R*PM_DEG_RAD, 0.0, "projection center DEC %f", fpa->toSky->R*PM_DEG_RAD); + + ok_float(fpa->toSky->Xs, PM_RAD_DEG/3600.0/10.0, "projection X scale %f", fpa->toSky->Xs); + ok_float(fpa->toSky->Ys, PM_RAD_DEG/3600.0/10.0, "projection X scale %f", fpa->toSky->Ys); + + ok_float(fpa->toTPA->x->coeff[1][0], 1.0, "TP scale (unity): %f", fpa->toTPA->x->coeff[1][0]); + ok_float(fpa->toTPA->y->coeff[0][1], 1.0, "TP scale (unity): %f", fpa->toTPA->x->coeff[1][0]); + + ok_float(chip->toFPA->x->coeff[0][0], -100.0, "ref pixel X: %f", chip->toFPA->x->coeff[0][0]); + ok_float(chip->toFPA->y->coeff[0][0], -100.0, "ref pixel Y: %f", chip->toFPA->y->coeff[0][0]); + + ok_float(chip->toFPA->x->coeff[1][0], 10.0, "CD1_1: %f", chip->toFPA->x->coeff[1][0]); + ok_float(chip->toFPA->x->coeff[0][1], 0.0, "CD1_2: %f", chip->toFPA->x->coeff[0][1]); + ok_float(chip->toFPA->y->coeff[1][0], 0.0, "CD2_1: %f", chip->toFPA->y->coeff[1][0]); + ok_float(chip->toFPA->y->coeff[0][1], 10.0, "CD2_2: %f", chip->toFPA->y->coeff[0][1]); + + psFree (fpa); + psFree (chip); + psFree (header); + + skip_end(); + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); + } + + return exit_status(); +} + Index: /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO.c (revision 12167) @@ -0,0 +1,527 @@ +#ifdef HAVE_CONFIG_H +#include +#endif +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +# if (HAVE_KAPA) + # include "dvo.h" + + psMetadata *WriteCoordsToHeader (Coords *coords); +void test1(); // basic TAN projection, +void test2(); // small rotation +void test3(); // 2nd order term + +void test1in(); // basic TAN projection, +void test2in(); // small rotation +void test3in(); // 2nd order term + +void testA(); // alloc test +void testB(); // alloc test + +int main (void) +{ + plan_tests(992); + + note("pmAstrometryWCS tests compared with DVO coords routines"); + note("this file tests pmAstromWCS <-> Header representations"); + + test1in(); + test2in(); + test3in(); + + test1(); + test2(); + test3(); + return exit_status(); +} + +void test3in() +{ + note("test pmAstromWCStoHeader"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + psMetadata *header1 = WriteCoordsToHeader(&coords); + pmAstromWCS *wcs1 = pmAstromWCSfromHeader(header1); + skip_start (wcs1 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + pmAstromWCStoHeader(header2, wcs1); + pmAstromWCS *wcs2 = pmAstromWCSfromHeader(header2); + + ok (wcs2 != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs2 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky1 = psSphereAlloc(); + psSphere *sky2 = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky1, wcs1, chip); + pmAstromWCStoSky (sky2, wcs2, chip); + while (sky1->r > 2*M_PI) + sky1->r -= 2*M_PI; + while (sky1->r < 0) + sky1->r += 2*M_PI; + while (sky2->r > 2*M_PI) + sky2->r -= 2*M_PI; + while (sky2->r < 0) + sky2->r += 2*M_PI; + + ok_float(sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, sky1->r*PM_DEG_RAD - sky2->r*PM_DEG_RAD); + ok_float(sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, sky1->d*PM_DEG_RAD - sky2->d*PM_DEG_RAD); + } + } + psFree (sky1); + psFree (sky2); + psFree (chip); + + skip_end(); + psFree (wcs2); + psFree (header2); + + skip_end(); + psFree (wcs1); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2in() +{ + note("test pmAstromWCStoHeader"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 0.9; + coords.pc1_2 = -0.1; + coords.pc2_1 = 0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader(&coords); + pmAstromWCS *wcs1 = pmAstromWCSfromHeader(header1); + skip_start (wcs1 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + pmAstromWCStoHeader(header2, wcs1); + pmAstromWCS *wcs2 = pmAstromWCSfromHeader(header2); + + ok (wcs2 != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs2 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky1 = psSphereAlloc(); + psSphere *sky2 = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky1, wcs1, chip); + pmAstromWCStoSky (sky2, wcs2, chip); + while (sky1->r > 2*M_PI) + sky1->r -= 2*M_PI; + while (sky1->r < 0) + sky1->r += 2*M_PI; + while (sky2->r > 2*M_PI) + sky2->r -= 2*M_PI; + while (sky2->r < 0) + sky2->r += 2*M_PI; + + ok_float(sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, sky1->r*PM_DEG_RAD - sky2->r*PM_DEG_RAD); + ok_float(sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, sky1->d*PM_DEG_RAD - sky2->d*PM_DEG_RAD); + } + } + psFree (sky1); + psFree (sky2); + psFree (chip); + + skip_end(); + psFree (wcs2); + psFree (header2); + + skip_end(); + psFree (wcs1); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test1in() +{ + note("test pmAstromWCStoHeader"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader(&coords); + pmAstromWCS *wcs1 = pmAstromWCSfromHeader(header1); + skip_start (wcs1 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + pmAstromWCStoHeader(header2, wcs1); + pmAstromWCS *wcs2 = pmAstromWCSfromHeader(header2); + + ok (wcs2 != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs2 == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky1 = psSphereAlloc(); + psSphere *sky2 = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky1, wcs1, chip); + pmAstromWCStoSky (sky2, wcs2, chip); + while (sky1->r > 2*M_PI) + sky1->r -= 2*M_PI; + while (sky1->r < 0) + sky1->r += 2*M_PI; + while (sky2->r > 2*M_PI) + sky2->r -= 2*M_PI; + while (sky2->r < 0) + sky2->r += 2*M_PI; + + ok_float(sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->r*PM_DEG_RAD, sky2->r*PM_DEG_RAD, sky1->r*PM_DEG_RAD - sky2->r*PM_DEG_RAD); + ok_float(sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", sky1->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD, sky2->d*PM_DEG_RAD - sky2->d*PM_DEG_RAD); + } + } + psFree (sky1); + psFree (sky2); + psFree (chip); + + skip_end(); + psFree (wcs2); + psFree (header2); + + skip_end(); + psFree (wcs1); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3 () +{ + note("test pmAstromWCSfromHeader "); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + psMetadata *header = WriteCoordsToHeader (&coords); + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + + ok (wcs != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky, wcs, chip); + while (sky->r > 2*M_PI) + sky->r -= 2*M_PI; + while (sky->r < 0) + sky->r += 2*M_PI; + + ok_float(rDVO, sky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, sky->r*PM_DEG_RAD, rDVO - sky->r*PM_DEG_RAD); + ok_float(dDVO, sky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, sky->d*PM_DEG_RAD, dDVO - sky->d*PM_DEG_RAD); + } + } + psFree (sky); + psFree (chip); + + skip_end(); + psFree (wcs); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2 () +{ + note("test pmAstromWCSfromHeader"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 0.9; + coords.pc1_2 = -0.1; + coords.pc2_1 = 0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + + ok (wcs != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky, wcs, chip); + while (sky->r > 2*M_PI) + sky->r -= 2*M_PI; + while (sky->r < 0) + sky->r += 2*M_PI; + + ok_float(rDVO, sky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, sky->r*PM_DEG_RAD, rDVO - sky->r*PM_DEG_RAD); + ok_float(dDVO, sky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, sky->d*PM_DEG_RAD, dDVO - sky->d*PM_DEG_RAD); + } + } + psFree (sky); + psFree (chip); + + skip_end(); + psFree (wcs); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test1() +{ + note("test pmAstromWCSfromHeader"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmAstromWCS *wcs = pmAstromWCSfromHeader (header); + + ok (wcs != NULL, "converted WCS keywords to WCS astrometry"); + skip_start (wcs == NULL, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psSphere *sky = psSphereAlloc(); + psPlane *chip = psPlaneAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + chip->x = x; + chip->y = y; + pmAstromWCStoSky (sky, wcs, chip); + while (sky->r > 2*M_PI) + sky->r -= 2*M_PI; + while (sky->r < 0) + sky->r += 2*M_PI; + + ok_float(rDVO, sky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, sky->r*PM_DEG_RAD, rDVO - sky->r*PM_DEG_RAD); + ok_float(dDVO, sky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, sky->d*PM_DEG_RAD, dDVO - sky->d*PM_DEG_RAD); + } + } + psFree (sky); + psFree (chip); + + skip_end(); + psFree (wcs); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void testA() +{ + note("test coord allocs"); + psMemId id = psMemGetId(); + + psPlane *chip = psPlaneAlloc(); + psFree (chip); + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void testB() +{ + note("test coord allocs"); + psMemId id = psMemGetId(); + + psSphere *sky = psSphereAlloc(); + psFree (sky); + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +psMetadata *WriteCoordsToHeader (Coords *coords) +{ + + char name[16]; + + // construct a header using coords as the input + psMetadata *header = psMetadataAlloc(); + + sprintf (name, "RA--%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", name); + sprintf (name, "DEC-%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", name); + + // center coords (R,D) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", coords[0].crval1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", coords[0].crval2); + + // center coords (X,Y) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", coords[0].crpix1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", coords[0].crpix2); + + // degrees per pixel + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", coords[0].cdelt1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", coords[0].cdelt2); + + // rotation matrix + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", coords[0].pc1_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", coords[0].pc1_2); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", coords[0].pc2_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", coords[0].pc2_2); + + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][1]); + + psMetadataAddS32 (header, PS_LIST_TAIL, "NPLYTERM", PS_META_REPLACE, "", coords[0].Npolyterms); + + return header; +} + +# else + + int main (void) +{ + plan_tests(0); + + note("pmAstrometryWCS tests compared with DVO coords routines : SKIPPED (libdvo not available)"); + + return exit_status(); +} + +# endif + Index: /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO2.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO2.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO2.c (revision 12167) @@ -0,0 +1,629 @@ +#ifdef HAVE_CONFIG_H +#include +#endif +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +# if (HAVE_KAPA) + # include "dvo.h" + + psMetadata *WriteCoordsToHeader (Coords *coords); +void test1(); // basic TAN projection, +void test2(); // small rotation +void test3(); // 2nd order term +void test1x(); // basic TAN projection with central offset +void test2x(); // small rotation with central offset +void test3x(); // 2nd order term with central offset +void test3inv(); // 2nd order term with central offset + +int main (void) +{ + plan_tests(1483); + + note("pmAstromReadWCS tests compared with DVO coords routines"); + + test1(); + test2(); + test3(); + test1x(); + test2x(); + test3x(); + test3inv(); + + return exit_status(); +} + +void test1() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 =-0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test1x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 =-0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + ok_float(rDVO, onSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", rDVO, onSky->r*PM_DEG_RAD, rDVO - onSky->r*PM_DEG_RAD); + ok_float(dDVO, onSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", dDVO, onSky->d*PM_DEG_RAD, dDVO - onSky->d*PM_DEG_RAD); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3inv() +{ + note("test the inversion of the non-linear polynomial for toFPA -> fromFPA in pmAstromReadWCS"); + note("note that the tolerance for these tests are rather loose"); + note("a 2nd order polynomial is not a great approximate to 1 over a 2nd order polynomial"); + note("unless the non-linear terms are quite small"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 1.0/3600; + coords.cdelt2 = 1.0/3600; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + + psMetadata *header = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header, PM_RAD_DEG*10.0/3600.0); + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psPlane *bChip = psPlaneAlloc(); + psPlane *bFPA = psPlaneAlloc(); + psPlane *bTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + // convert up to sky + aChip->x = x; + aChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (onSky, aTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + psProject (bTPA, onSky, fpa->toSky); + psPlaneTransformApply (bFPA, fpa->fromTPA, bTPA); + psPlaneTransformApply (bChip, chip->fromFPA, bFPA); + + // calculate appropriate tol values as f(x,y) + ok_float_tol(aChip->x, bChip->x, 1.0, "coordinate match: %f vs %f (delta = %f)", aChip->x, bChip->x, aChip->x - bChip->x); + ok_float_tol(aChip->y, bChip->y, 1.0, "coordinate match: %f vs %f (delta = %f)", aChip->y, bChip->y, aChip->y - bChip->y); + + ok_float(aFPA->x, bFPA->x, "coordinate match: %f vs %f (delta = %f)", aFPA->x, bFPA->x, aFPA->x - bFPA->x); + ok_float(aFPA->y, bFPA->y, "coordinate match: %f vs %f (delta = %f)", aFPA->y, bFPA->y, aFPA->y - bFPA->y); + + // in this example, TPA coordinates are 10 arcsec/mm; the tol. below represent 1nano-arcsec + ok_float_tol(aTPA->x, bTPA->x, 1e-10, "coordinate match: %f vs %f (delta = %g)", aTPA->x, bTPA->x, aTPA->x - bTPA->x); + ok_float_tol(aTPA->y, bTPA->y, 1e-10, "coordinate match: %f vs %f (delta = %g)", aTPA->y, bTPA->y, aTPA->y - bTPA->y); + } + } + psFree (onSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + psFree (bTPA); + psFree (bFPA); + psFree (bChip); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +psMetadata *WriteCoordsToHeader (Coords *coords) +{ + + char name[16]; + + // construct a header using coords as the input + psMetadata *header = psMetadataAlloc(); + + sprintf (name, "RA--%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", name); + sprintf (name, "DEC-%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", name); + + // center coords (R,D) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", coords[0].crval1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", coords[0].crval2); + + // center coords (X,Y) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", coords[0].crpix1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", coords[0].crpix2); + + // degrees per pixel + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", coords[0].cdelt1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", coords[0].cdelt2); + + // rotation matrix + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", coords[0].pc1_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", coords[0].pc1_2); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", coords[0].pc2_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", coords[0].pc2_2); + + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][1]); + + psMetadataAddS32 (header, PS_LIST_TAIL, "NPLYTERM", PS_META_REPLACE, "", coords[0].Npolyterms); + + return header; +} + +# else + + int main (void) +{ + plan_tests(0); + + note("pmAstrometryWCS tests compared with DVO coords routines : SKIPPED (libdvo not available)"); + + return exit_status(); +} + +# endif + Index: /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO3.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO3.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO3.c (revision 12167) @@ -0,0 +1,654 @@ +#ifdef HAVE_CONFIG_H +#include +#endif +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +# if (HAVE_KAPA) + # include "dvo.h" + + psMetadata *WriteCoordsToHeader (Coords *coords); +void test1(); // basic TAN projection, +void test2(); // small rotation +void test3(); // 2nd order term +void test1x(); // basic TAN projection with central offset +void test2x(); // small rotation with central offset +void test3x(); // 2nd order term with central offset + +int main (void) +{ + plan_tests(991); + + note("pmAstromWriteWCS tests compared with DVO coords routines"); + + test1(); + test2(); + test3(); + test1x(); + test2x(); + test3x(); + + return exit_status(); +} + +void test1() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.001); + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + ok_float(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 = -0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader (&coords); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.001); + + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + ok_float(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + psMetadata *header1 = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.001); + + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + ok_float(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test1x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 20.0; + coords.crpix2 = 50.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.001); + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + ok_float(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test2x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 = -0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + psMetadata *header1 = WriteCoordsToHeader (&coords); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.001); + + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + ok_float(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +void test3x() +{ + note("test pmAstromReadWCS"); + psMemId id = psMemGetId(); + + // build a DVO-style coordinate system + Coords coords; + strcpy (coords.ctype, "RA---TAN"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 20.0; + coords.crpix2 = 50.0; + coords.cdelt1 = 1.0/3600.0; + coords.cdelt2 = 1.0/3600.0; + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + psMetadata *header1 = WriteCoordsToHeader (&coords); + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadWCS (fpa, chip, header1, 10.0); + + ok (status, "converted WCS keywords to WCS astrometry"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psMetadata *header2 = psMetadataAlloc(); + status = pmAstromWriteWCS (header2, fpa, chip, 0.00001); + + pmAstromWCS *wcs = pmAstromWCSfromHeader(header2); + + psPlane *aChip = psPlaneAlloc(); + psPlane *aFPA = psPlaneAlloc(); + psPlane *aTPA = psPlaneAlloc(); + psSphere *aSky = psSphereAlloc(); + + psPlane *bChip = psPlaneAlloc(); + psSphere *bSky = psSphereAlloc(); + + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + aChip->x = x; + aChip->y = y; + bChip->x = x; + bChip->y = y; + + psPlaneTransformApply (aFPA, chip->toFPA, aChip); + psPlaneTransformApply (aTPA, fpa->toTPA, aFPA); + psDeproject (aSky, aTPA, fpa->toSky); + + pmAstromWCStoSky (bSky, wcs, bChip); + + while (aSky->r > 2*M_PI) + aSky->r -= 2*M_PI; + while (aSky->r < 0) + aSky->r += 2*M_PI; + while (bSky->r > 2*M_PI) + bSky->r -= 2*M_PI; + while (bSky->r < 0) + bSky->r += 2*M_PI; + + // XXX we are getting round-off errors as a result of the wcs transformation + // having terms in units of pix/degree. for now require 10mas on this + ok_float_tol(aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, 0.01/3600.0, "coordinate match: %f vs %f (delta = %f)", aSky->r*PM_DEG_RAD, bSky->r*PM_DEG_RAD, aSky->r*PM_DEG_RAD - bSky->r*PM_DEG_RAD); + ok_float_tol(aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, 0.01/3600.0, "coordinate match: %f vs %f (delta = %f)", aSky->d*PM_DEG_RAD, bSky->d*PM_DEG_RAD, aSky->d*PM_DEG_RAD - bSky->d*PM_DEG_RAD); + } + } + psFree (aSky); + psFree (aTPA); + psFree (aFPA); + psFree (aChip); + + psFree (bSky); + psFree (bChip); + + psFree (wcs); + psFree (header2); + + skip_end(); + psFree (fpa); + psFree (chip); + psFree (header1); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +psMetadata *WriteCoordsToHeader (Coords *coords) +{ + + char name[16]; + + // construct a header using coords as the input + psMetadata *header = psMetadataAlloc(); + + sprintf (name, "RA--%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", name); + sprintf (name, "DEC-%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", name); + + // center coords (R,D) + psMetadataAddF64 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", coords[0].crval1); + psMetadataAddF64 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", coords[0].crval2); + + // center coords (X,Y) + psMetadataAddF64 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", coords[0].crpix1); + psMetadataAddF64 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", coords[0].crpix2); + + // degrees per pixel + psMetadataAddF64 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", coords[0].cdelt1); + psMetadataAddF64 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", coords[0].cdelt2); + + // rotation matrix + psMetadataAddF64 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", coords[0].pc1_1); + psMetadataAddF64 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", coords[0].pc1_2); + psMetadataAddF64 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", coords[0].pc2_1); + psMetadataAddF64 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", coords[0].pc2_2); + + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA1X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][0]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][1]); + psMetadataAddF64 (header, PS_LIST_TAIL, "PCA2X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][1]); + + psMetadataAddS32 (header, PS_LIST_TAIL, "NPLYTERM", PS_META_REPLACE, "", coords[0].Npolyterms); + + return header; +} + +# else + + int main (void) +{ + plan_tests(0); + + note("pmAstrometryWCS tests compared with DVO coords routines : SKIPPED (libdvo not available)"); + + return exit_status(); +} + +# endif + Index: /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO4.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO4.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tap_pmAstrometryWCS_DVO4.c (revision 12167) @@ -0,0 +1,954 @@ +#ifdef HAVE_CONFIG_H +#include +#endif +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +# if (HAVE_KAPA) + # include "dvo.h" + + psMetadata *WriteCoordsToHeader (Coords *coords); +void test1(); // basic WRP+DIS projections, +void test2(); // small rotation +void test3(); // 2nd order terms in WRP +void test4(); // small rotation in WRP and DIS +void test5(); // 2nd order terms in WRP and DIS +void test1x(); // basic WRP+DIS projections with central offset +void test2x(); // small rotation with central offset +void test3x(); // 2nd order term in WRP with central offset + +int main (void) +{ + plan_tests(1329); + + note("pmAstromWriteWCS tests compared with DVO coords routines"); + + test1(); + test2(); + test3(); + test4(); + test5(); + test1x(); + test2x(); + test3x(); + + return exit_status(); +} + +// create a fake chip-level mosaic header +void test1() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test2() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 =-0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test3() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test4() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 =-0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 0.9; + mosaic.pc1_2 =-0.1; + mosaic.pc2_1 = 0.1; + mosaic.pc2_2 = 0.9; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test5() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = 0.0; + coords.crpix2 = 0.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + mosaic.polyterms[0][0] = 0.01; // L vs X^2 + mosaic.polyterms[2][1] = 0.01; // M vs Y^2 + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test1x() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test2x() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 0.9; + coords.pc1_2 = 0.1; + coords.pc2_1 =-0.1; + coords.pc2_2 = 0.9; + coords.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +// create a fake chip-level mosaic header +void test3x() +{ + note("test pmAstrom Read,Write BilevelChip"); + psMemId id = psMemGetId(); + + // build a DVO-style mosaic coordinate system + // chip-level data (chip -> fpa) + Coords coords; + strcpy (coords.ctype, "RA---WRP"); + coords.crval1 = 0.0; + coords.crval2 = 0.0; + coords.crpix1 = +50.0; + coords.crpix2 = -20.0; + coords.cdelt1 = 10.0; // microns per pixel + coords.cdelt2 = 10.0; // microns per pixel + coords.pc1_1 = 1.0; + coords.pc1_2 = 0.0; + coords.pc2_1 = 0.0; + coords.pc2_2 = 1.0; + coords.Npolyterms = 2; + for (int i = 0; i < 7; i++) { + coords.polyterms[i][0] = 0.0; + coords.polyterms[i][1] = 0.0; + } + coords.polyterms[0][0] = 0.01; // L vs X^2 + coords.polyterms[2][1] = 0.01; // M vs Y^2 + + // mosaic-level data (fpa->sky) + Coords mosaic; + strcpy (mosaic.ctype, "RA---DIS"); + mosaic.crval1 = 0.0; + mosaic.crval2 = 0.0; + mosaic.crpix1 = 0.0; + mosaic.crpix2 = 0.0; + mosaic.cdelt1 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.cdelt2 = 1.0 / 10.0 / 3600.0; // degrees per micron + mosaic.pc1_1 = 1.0; + mosaic.pc1_2 = 0.0; + mosaic.pc2_1 = 0.0; + mosaic.pc2_2 = 1.0; + mosaic.Npolyterms = 0; + for (int i = 0; i < 7; i++) { + mosaic.polyterms[i][0] = 0.0; + mosaic.polyterms[i][1] = 0.0; + } + RegisterMosaic (&mosaic); + + psMetadata *headerChp = WriteCoordsToHeader (&coords); + psMetadata *headerMos = WriteCoordsToHeader (&mosaic); + + pmFPA *fpa = pmFPAAlloc (NULL); + pmChip *chip = pmChipAlloc (fpa, NULL); + + bool status = pmAstromReadBilevelChip (chip, headerChp); + ok (status, "read bilevel chip header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + bool status = pmAstromReadBilevelMosaic (fpa, headerMos); + ok (status, "read bilevel fpa header"); + skip_start (!status, 1, "*** WCS Conversion FAILS *** : skipping related tests"); + + psPlane *onChip = psPlaneAlloc(); + psPlane *onFPA = psPlaneAlloc(); + psPlane *onTPA = psPlaneAlloc(); + psSphere *onSky = psSphereAlloc(); + + double rDVO, dDVO; + for (double x = -2000; x <= +2000; x+= 500.0) { + for (double y = -2000; y <= +2000; y+= 500.0) { + XY_to_RD (&rDVO, &dDVO, x, y, &coords); + + onChip->x = x; + onChip->y = y; + + psPlaneTransformApply (onFPA, chip->toFPA, onChip); + psPlaneTransformApply (onTPA, fpa->toTPA, onFPA); + psDeproject (onSky, onTPA, fpa->toSky); + + while (onSky->r > 2*M_PI) + onSky->r -= 2*M_PI; + while (onSky->r < 0) + onSky->r += 2*M_PI; + + // fprintf (stderr, "fpa x: %f vs %f : %f\n", rDVO, onFPA->x, rDVO - onFPA->x); + // fprintf (stderr, "fpa y: %f vs %f : %f\n", dDVO, onFPA->y, dDVO - onFPA->y); + + ok_float(onSky->r*PM_DEG_RAD, rDVO, "coordinate match: %f vs %f (delta = %f)", onSky->r*PM_DEG_RAD, rDVO, 3600.0*(onSky->r*PM_DEG_RAD - rDVO)); + ok_float(onSky->d*PM_DEG_RAD, dDVO, "coordinate match: %f vs %f (delta = %f)", onSky->d*PM_DEG_RAD, dDVO, 3600.0*(onSky->d*PM_DEG_RAD - dDVO)); + } + } + psFree (onSky); + psFree (onTPA); + psFree (onFPA); + psFree (onChip); + + skip_end(); + skip_end(); + psFree (fpa); + psFree (chip); + + psFree (headerMos); + psFree (headerChp); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); +} + +psMetadata *WriteCoordsToHeader (Coords *coords) +{ + + char name[16]; + + // construct a header using coords as the input + psMetadata *header = psMetadataAlloc(); + + sprintf (name, "RA--%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE1", PS_META_REPLACE, "", name); + sprintf (name, "DEC-%s", &coords[0].ctype[4]); + psMetadataAddStr (header, PS_LIST_TAIL, "CTYPE2", PS_META_REPLACE, "", name); + + // center coords (R,D) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL1", PS_META_REPLACE, "", coords[0].crval1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRVAL2", PS_META_REPLACE, "", coords[0].crval2); + + // center coords (X,Y) + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX1", PS_META_REPLACE, "", coords[0].crpix1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CRPIX2", PS_META_REPLACE, "", coords[0].crpix2); + + // degrees per pixel + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT1", PS_META_REPLACE, "", coords[0].cdelt1); + psMetadataAddF32 (header, PS_LIST_TAIL, "CDELT2", PS_META_REPLACE, "", coords[0].cdelt2); + + // rotation matrix + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001001", PS_META_REPLACE, "", coords[0].pc1_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC001002", PS_META_REPLACE, "", coords[0].pc1_2); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002001", PS_META_REPLACE, "", coords[0].pc2_1); + psMetadataAddF32 (header, PS_LIST_TAIL, "PC002002", PS_META_REPLACE, "", coords[0].pc2_2); + + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y0", PS_META_REPLACE, "", coords[0].polyterms[0][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y1", PS_META_REPLACE, "", coords[0].polyterms[1][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y2", PS_META_REPLACE, "", coords[0].polyterms[2][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA1X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][0]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X3Y0", PS_META_REPLACE, "", coords[0].polyterms[3][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X2Y1", PS_META_REPLACE, "", coords[0].polyterms[4][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X1Y2", PS_META_REPLACE, "", coords[0].polyterms[5][1]); + psMetadataAddF32 (header, PS_LIST_TAIL, "PCA2X0Y3", PS_META_REPLACE, "", coords[0].polyterms[6][1]); + + psMetadataAddS32 (header, PS_LIST_TAIL, "NPLYTERM", PS_META_REPLACE, "", coords[0].Npolyterms); + + return header; +} + +# else + + int main (void) +{ + plan_tests(0); + + note("pmAstrometryWCS tests compared with DVO coords routines : SKIPPED (libdvo not available)"); + + return exit_status(); +} + +# endif + Index: /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry.c (revision 12167) @@ -0,0 +1,615 @@ +/** @file tst_pmAstrometry.c + * + * @brief Contains the tests: pmAstrometry.[ch]. The pmxxxAlloc() + * and psFree() functionality are used here. + * + * @author GLG, MHPCC + * + * XXX: Untested: pmFPACheckParents() + * XXX: Create the pmHDU alloc/free function, test them here + * + * @version $Revision: 1.6 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-01-26 21:10:51 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "config.h" +#include +#include +#include "psTest.h" +#include "pslib_strict.h" +#include "pmAstrometry.h" + +static psS32 testFPAAlloc(void); +static psS32 testChipAlloc(void); +static psS32 testCellAlloc(void); +static psS32 testReadoutAlloc(void); + +testDescription tests[] = { + {testFPAAlloc,739,"pmFPAAlloc",0,false}, + {testChipAlloc,740,"pmChipAlloc",0,false}, + {testCellAlloc,741,"pmCellAlloc",0,false}, + {testReadoutAlloc,742,"pmReadoutAlloc",0,false}, + {NULL} + }; + +#define CHIP_ALLOC_NAME "ChipName" +#define CELL_ALLOC_NAME "CellName" +#define MISC_NUM 32 +#define MISC_NAME "META00" +#define MISC_NAME2 "META01" +#define NUM_BIAS_DATA 10 +#define TEST_NUM_ROWS 32 +#define TEST_NUM_COLS 32 + +psPlaneTransform *PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM() +{ + psPlaneTransform *pt = psPlaneTransformAlloc(1, 1); + pt->x->coeff[1][0] = 1.0; + pt->y->coeff[0][1] = 1.0; + return(pt); +} + +psPlaneDistort *PS_CREATE_4D_IDENTITY_PLANE_DISTORT() +{ + psPlaneDistort *pd = psPlaneDistortAlloc(1, 1, 1, 1); + pd->x->coeff[1][0][0][0] = 1.0; + pd->y->coeff[0][1][0][0] = 1.0; + return(pd); +} + +/****************************************************************************** +generateSimpleFPA(): This function generates a pmFPA data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmFPA *generateSimpleFPA() +{ + psBool rc; + pmFPA* fpa = pmFPAAlloc(psMetadataAlloc()); + + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc() returned a NULL."); + return(NULL); + } + + // + // Test and create camera metadata. + // + if (fpa->camera == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: fpa->camera is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) fpa->camera, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to fpa->camera."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, fpa->camera, MISC_NAME); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from fpa->camera."); + psFree(fpa); + return(NULL); + } + } + + // + // Create various transforms and projections. + // + fpa->fromTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + fpa->toTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + fpa->projection = psProjectionAlloc(0.0,0.0,10.0,10.0,PS_PROJ_TAN); + + // + // Ensure fpa concepts metadata was allocated properly. + // + if (fpa->concepts == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set fpa->concepts."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32(fpa->concepts, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add data to fpa->concepts."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, fpa->concepts, MISC_NAME); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from fpa->concepts."); + psFree(fpa); + return(NULL); + } + } + + // + // Create ->analysis metadata. + // + fpa->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(fpa->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the fpa->chips array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + // + // Create ->phu metadata. + // + fpa->phu = psMetadataAlloc(); + rc = psMetadataAddS32(fpa->phu, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + return(fpa); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + psLogSetFormat("HLNM"); + + return ! runTestSuite(stderr,"pmAstrometry",tests,argc,argv); +} + +/****************************************************************************** +testFPAAlloc() + 1: We ensure that pmFPAAlloc() properly allocates a pmFPA struct. + 2: We populate the members with real data to ensure they are being + free'ed correctly. + *****************************************************************************/ +static psS32 testFPAAlloc(void) +{ + psMetadata *camera = psMetadataAlloc(); + pmFPA* fpa = pmFPAAlloc(camera); + + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc() returned a NULL."); + return 1; + } + + if (fpa->fromTangentPlane != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->fromTangentPlane to NULL."); + return 2; + } + + if (fpa->toTangentPlane != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->toTangentPlane to NULL."); + return 3; + } + if (fpa->projection != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->projection to NULL."); + return 4; + } + + if (fpa->concepts == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->concepts."); + return 5; + } + + if (fpa->analysis != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->analysis to NULL."); + return 6; + } + + if (fpa->camera != camera) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->camera."); + return 7; + } + + if (fpa->chips == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->chips."); + return 8; + } + + if (fpa->hdu != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->hdu to NULL."); + return 9; + } + psFree(fpa); + + // + // Populate the pmFPA struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: generateSimpleFPA() returned NULL."); + return(15); + } + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleChip(): This function generates a pmChip data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmChip *generateSimpleChip(pmFPA *fpa) +{ + psBool rc; + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + if (chip == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmChipAlloc returned a NULL."); + return(NULL); + } + chip->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + chip->fromFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + // + // We already ensured that chip->concepts was working properly. + // + + // + // Create ->analysis metadata. + // + chip->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(chip->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the chip->cells array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + return(chip); +} + +static psS32 testChipAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + if (chip == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmChipAlloc returned a NULL."); + return 1; + } + + if (chip->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->col0 set improperly.\n"); + return 5; + } + + if (chip->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->row0 set improperly.\n"); + return 6; + } + + if (chip->toFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->toChip set improperly.\n"); + return 7; + } + + if (chip->fromFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->toFPA set improperly.\n"); + return 8; + } + + if (chip->concepts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->concepts set improperly.\n"); + return 21; + } else { + psMetadataItem *tmpMeta = psMetadataLookup(chip->concepts, "CHIP.NAME"); + if (0 != strcmp((char *) tmpMeta->data.V, CHIP_ALLOC_NAME)) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: The metadata was set improperly.\n"); + return (32); + } + // XXX: Code a test to ensure the metadata has the correct type + } + + if (chip->analysis != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->analysis set improperly.\n"); + return 10; + } + + if (chip->cells == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->cells set improperly.\n"); + return 22; + } + + if (chip->parent != fpa) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->parent set improperly.\n"); + return 23; + } + + if (chip->valid != false) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->valid set improperly.\n"); + return 24; + } + + if (chip->hdu != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->hdu set improperly.\n"); + return 25; + } + psFree(fpa); + + // + // Populate the pmChip struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleCell(): This function generates a pmCell data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmCell *generateSimpleCell(pmFPA *fpa, pmChip *chip) +{ + psBool rc; + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + if (cell == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmCellAlloc returned a NULL."); + return(NULL); + } + cell->toChip = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + cell->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + cell->toSky = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + // + // We already ensured that cell->concepts was working properly. + // + + // + // Test camera metadata. + // + if (cell->camera == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->camera is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) cell->camera, PS_LIST_HEAD, MISC_NAME2, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to cell->camera."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, cell->camera, MISC_NAME2); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from cell->camera."); + psFree(fpa); + return(NULL); + } + } + + // + // Create ->analysis metadata. + // + cell->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(cell->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the cell->readouts array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + return(cell); +} + +static psS32 testCellAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + if (cell == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmCellAlloc returned a NULL.n"); + return 3; + } + + if (cell->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->col0 set improperly.\n"); + return 5; + } + + if (cell->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->row0 set improperly.\n"); + return 6; + } + + if (cell->toChip != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toChip set improperly.\n"); + return 7; + } + + if (cell->toFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toFPA set improperly.\n"); + return 8; + } + + if (cell->toSky != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toSky set improperly.\n"); + return 9; + } + + if (cell->concepts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->concepts set improperly.\n"); + return 21; + } else { + psMetadataItem *tmpMeta = psMetadataLookup(cell->concepts, "CELL.NAME"); + if (0 != strcmp((char *) tmpMeta->data.V, CELL_ALLOC_NAME)) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: The metadata was set improperly.\n"); + return (32); + } + // XXX: Code a test to ensure the metadata has the correct type + } + + if (cell->camera != fpa->camera) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->camera set improperly.\n"); + return 20; + } + + if (cell->analysis != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->analysis set improperly.\n"); + return 10; + } + + if (cell->readouts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->readouts set improperly.\n"); + return 22; + } + + if (cell->parent != chip) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->parent set improperly.\n"); + return 23; + } + + if (cell->valid != false) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->valid set improperly.\n"); + return 24; + } + + if (cell->hdu != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->hdu set improperly.\n"); + return 27; + } + psFree(fpa); + + // + // Populate the pmCell struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + cell = generateSimpleCell(fpa, chip); + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleReadout(): This function generates a pmReadout data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmReadout *generateSimpleReadout(pmFPA *fpa, pmChip *chip, pmCell *cell) +{ + psBool rc; + pmReadout *readout = pmReadoutAlloc(cell); + if (readout == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmReadoutAlloc returned a NULL."); + return(NULL); + } + readout->image = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + readout->mask = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_U8); + readout->weight = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + + // + // Create a psList of bias data. + // + for (psS32 i = 0 ; i < NUM_BIAS_DATA ; i++) { + psImage *tmpImage = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + if (readout->bias == NULL) { + readout->bias = psListAlloc(tmpImage); + } else { + psListAdd(readout->bias, PS_LIST_HEAD, tmpImage); + } + } + + // + // Test readout->analysis metadata. + // + if (readout->analysis == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: readout->analysis is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) readout->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to readout->analysis."); + psFree(fpa); + return(NULL); + } + } + + return(readout); +} + + +static psS32 testReadoutAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + pmReadout *readout = pmReadoutAlloc(cell); + if (readout == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmReadoutAlloc returned a NULL.\n"); + return 4; + } + + if (readout->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->col0 set improperly.\n"); + return 5; + } + + if (readout->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->row0 set improperly.\n"); + return 6; + } + + if (readout->colBins != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->colBins set improperly.\n"); + return 7; + } + + if (readout->rowBins != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->colBins set improperly.\n"); + return 8; + } + + if (readout->image != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->image set improperly.\n"); + return 10; + } + + if (readout->mask != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->mask set improperly.\n"); + return 12; + } + + if (readout->weight != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->weight set improperly.\n"); + return 14; + } + + if (readout->bias != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->bias set improperly.\n"); + return 16; + } + + if (readout->analysis == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->analysis set improperly.\n"); + return 18; + } + + if (readout->parent != cell) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->parent set improperly.\n"); + return 20; + } + psFree(fpa); + + // + // Populate the pmReadout struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + cell = generateSimpleCell(fpa, chip); + readout = generateSimpleReadout(fpa, chip, cell); + psFree(fpa); + + return(0); +} Index: /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry01.c =================================================================== --- /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry01.c (revision 12167) +++ /branches/rel-1-1/psModules/test/astrom/tst_pmAstrometry01.c (revision 12167) @@ -0,0 +1,675 @@ +/** @file tst_psAstrometry01.c +* +* @brief This code will test the pmFPA hierarchy transform code in psAstrometry.[ch] +* +* @author GLG, MHPCC +* +* @version $Revision: 1.5 $ $Name: not supported by cvs2svn $ +* @date $Date: 2006-03-06 22:53:47 $ +* +* XXX: Add tests were the coordinate does not transform to any legitimate cell +* or chip, or FPA, or whatever. +* +* XXX: For each function, add tests for bad input parameters, as well as failed transforms. +* +* XXX: Must test pmFPASelectChip() and pmFPAExcludeChip(). +* +* Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii +*/ +#include "config.h" +#include +#include +#include "psTest.h" +#include "pslib_strict.h" +#include "pmAstrometry.h" +static psS32 test3( void ); +static psS32 test4( void ); +static psS32 test5( void ); + +testDescription tests[] = { + {test3, 666, "pmAstrometry focal plane transformations", 0, false}, + {test4, 667, "pmCheckParents()", 0, false}, + {test5, 668, "pmFPASelectChip() and pmFPAExcludeChip()", 0, false}, + {NULL} + }; + +psS32 currentId = 0; +psS32 memLeaks = 0; +psS32 main( psS32 argc, char* argv[] ) +{ + psLogSetLevel( PS_LOG_INFO ); + psLogSetFormat("HLNM"); + + return ( ! runTestSuite( stderr, "psAstrometry", tests, argc, argv ) ); +} + +#define PS_PERCENT_COMPARE(X, Y, PERCENT_FRACTION) (fabs((Y)-(X))/fabs(X) < (PERCENT_FRACTION)) +#define VERBOSE 0 +#define NUM_READOUTS 1 +#define READOUT_NUM_ROWS 10 +#define READOUT_NUM_COLS 10 + +#define NUM_CELLS 4 +#define CELL_GAP 2 +#define CELL_WIDTH READOUT_NUM_COLS +#define CELL_HEIGHT READOUT_NUM_ROWS +#define CELL_MIN_X 0 +#define CELL_MAX_X CELL_HEIGHT +#define CELL_MIN_Y 0 +#define CELL_MAX_Y CELL_WIDTH + +#define NUM_CHIPS 2 +#define CHIP_GAP 2 +#define CHIP_MIN_X 0 +#define CHIP_MAX_X CELL_HEIGHT +#define CHIP_MIN_Y 0 +#define CHIP_MAX_Y ((NUM_CELLS * CELL_WIDTH) + ((NUM_CELLS) * CELL_GAP)) +#define CHIP_WIDTH CHIP_MAX_Y +#define CHIP_HEIGHT CHIP_MAX_X + +#define NUM_FPAS 1 +#define FPA_MIN_X 0 +#define FPA_MAX_X CHIP_HEIGHT +#define FPA_MIN_Y 0 +#define FPA_MAX_Y (((NUM_CHIPS) * CHIP_WIDTH) + (((NUM_CHIPS)-1) * CHIP_GAP)) + +#define PROJECTION_SCALE_X 1.0 +#define PROJECTION_SCALE_Y 1.0 + +psPlaneTransform *PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM() +{ + psPlaneTransform *pt = psPlaneTransformAlloc(1, 1); + pt->x->coeff[1][0] = 1.0; + pt->y->coeff[0][1] = 1.0; + return(pt); +} + +psPlaneDistort *PS_CREATE_4D_IDENTITY_PLANE_DISTORT() +{ + psPlaneDistort *pd = psPlaneDistortAlloc(1, 1, 1, 1); + pd->x->coeff[1][0][0][0] = 1.0; + pd->y->coeff[0][1][0][0] = 1.0; + return(pd); +} + +/****************************************************************************** +genSystem(): This routine will create a system of FPAs/Chips/Cells/Readouts. For +simplicity, an FPA is defined as a linear array of chips, and a chip is +defined as a linear array of cells, both in the y (cols) direction. The +transforms between the various layers take into account the cell/chip and +the boundaries between each. + *****************************************************************************/ +pmFPA *genSystem() +{ + // + // Create top pmFPA structure. + // + const psMetadata *camera = psMetadataAlloc(); + pmFPA* myFPA = pmFPAAlloc(camera); + if (myFPA == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc() returned a NULL.\n"); + return NULL; + } + myFPA->fromTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + myFPA->toTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + myFPA->projection = psProjectionAlloc(0.0,0.0,PROJECTION_SCALE_X,PROJECTION_SCALE_X,PS_PROJ_TAN); + + myFPA->chips = psArrayRealloc(myFPA->chips, NUM_CHIPS); + for (psS32 chipID=0 ; chipIDchips->data[chipID] = (psPtr *) myChip; + myChip->row0 = 0; + myChip->col0 = chipID * (CHIP_WIDTH + CHIP_GAP); + + // We create the transforms between the chip and FPA. The + // transform is a simple identity transform. + myChip->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + myChip->toFPA->y->coeff[0][0] = (psF64) myChip->col0; + myChip->toFPA->y->coeff[1][1] = 0.0; + myChip->toFPA->x->coeff[0][0] = (psF64) myChip->row0; + myChip->toFPA->x->coeff[1][1] = 0.0; + + myChip->fromFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + myChip->fromFPA->y->coeff[0][0] = (psF64) (- myChip->col0); + myChip->fromFPA->y->coeff[1][1] = 0.0; + myChip->fromFPA->x->coeff[0][0] = (psF64) (- myChip->row0); + myChip->fromFPA->x->coeff[1][1] = 0.0; + + myChip->cells = psArrayRealloc(myChip->cells, NUM_CELLS); + for (psS32 cellID=0 ; cellIDcells->data[cellID] = (psPtr *) myCell; + myCell->row0 = 0; + myCell->col0 = cellID * (CELL_WIDTH + CELL_GAP); + myCell->toChip = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + myCell->toChip->y->coeff[0][0] = (psF64) myCell->col0; + myCell->toChip->y->coeff[1][1] = 0.0; + myCell->toChip->x->coeff[0][0] = (psF64) myCell->row0; + myCell->toChip->x->coeff[1][1] = 0.0; + + myCell->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + myCell->toFPA->y->coeff[0][0] = (psF64) (myCell->col0 + myChip->col0); + myCell->toFPA->y->coeff[1][1] = 0.0; + myCell->toFPA->x->coeff[0][0] = (psF64) (myCell->row0 + myChip->row0); + myCell->toFPA->x->coeff[1][1] = 0.0; + + myCell->toSky = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + myCell->toSky->y->coeff[0][0] = myCell->toFPA->y->coeff[0][0]; + myCell->toSky->y->coeff[1][1] = 0.0; + myCell->toSky->x->coeff[0][0] = myCell->toFPA->x->coeff[0][0]; + myCell->toSky->x->coeff[1][1] = 0.0; + + myCell->readouts = psArrayRealloc(myCell->readouts, NUM_READOUTS); + for (psS32 readoutID=0 ; readoutIDreadouts->data[readoutID] = (psPtr *) myReadout; + myReadout->image = psImageAlloc(READOUT_NUM_COLS, READOUT_NUM_ROWS, PS_TYPE_F32); + for (psS32 row=0;rowimage->data.F32[row][col] = (psF32) ((chipID * (CHIP_WIDTH + CHIP_GAP)) + + (cellID * (CELL_WIDTH + CELL_GAP))); + } + } + myReadout->row0 = myCell->row0; + myReadout->col0 = myCell->col0; + myReadout->rowBins = 0; + myReadout->colBins = 0; + } + if (VERBOSE) { + printf("\n\n\n\nFor chip %d cell %d the cell->toFPA transform is:\n", chipID, cellID); + PS_PRINT_PLANE_TRANSFORM(myCell->toFPA); + printf("\n\n\n\nFor chip %d cell %d the cell->toChip transform is:\n", chipID, cellID); + PS_PRINT_PLANE_TRANSFORM(myCell->toChip); + printf("\n\n\n\nFor chip %d cell %d the cell->toSky transform is:\n", chipID, cellID); + PS_PRINT_PLANE_TRANSFORM(myCell->toSky); + } + } + if (VERBOSE) { + printf("\n\n\n\nFor chip %d the chip->toFPA transform is:\n", chipID); + PS_PRINT_PLANE_TRANSFORM(myChip->toFPA); + printf("\n\n\n\nFor chip %d the chip->fromFPA transform is:\n", chipID); + PS_PRINT_PLANE_TRANSFORM(myChip->fromFPA); + } + } + + return(myFPA); +} + + +/****************************************************************************** +This routine tests many Astrometry functions. It loops through all valid +pixels of all cells of all chips and computes the corresponding (x,y) +coordinates in the FPA plane. It then calls the pmChipInFPA() then +pmCellInFPA() with the FPA coordinate and determines the chip/cell that that +coordinate corresponds to. Following that it does a variety of tests on the +various functions that tharnsform coordinates within the pmFPA hierarchy. + +List of tested functions: + pmCellInFPA() yes + pmChipInFPA() yes + pmCellInChip() yes + + pmCoordCellToFPA() yes + pmCoordChipToFPA() yes + pmCoordFPAToChip() yes + pmCoordCellToChip() yes + pmCoordChipToCell() yes + + pmCoordFPAToTP() yes + pmCoordTPToFPA() yes + + pmCoordTPToSky() yes + pmCoordSkyToTP() yes + pmCoordSkyToCell() yes + pmCoordCellToSky() yes + pmCoordCellToSkyQuick() yes + pmCoordSkyToCellQuick() yes + *****************************************************************************/ +psS32 test3( void ) +{ + psS32 x; + psS32 y; + psPlane fpaCoord; + pmFPA *myFPA = genSystem(); + pmCell *myCell = NULL; + psPlane chipCoord; + psPlane cellCoord; + psPlane testCoord; + psSphere *skyCoord = psSphereAlloc(); + // XXX: This code causes a seg fault. + // psSphere skyTmp; + // psMemCheckType(PS_DATA_SPHERE, &skyTmp); + psPlane tpCoord; + psS32 testStatus = 0; + + // + // I'm not convinced that the p_psProject() and p_psDeproject() functions work + // correctly. If we project a set of coordinates over a wide range of (R, D) + // values, then deproject them, the original (R, D) values are only produced + // when D is larger than 0. This code demonstrates that. I also created tests + // that currently fail in tst_psCoord01.c. I have a workaround in the function + // XXXDeproject() in pmAstrometry.c. + // + if (0) { + // This loop goes from (R, D) -> (X, Y) -> (R, D) + psPlane planeCoord01; + psSphere skyCoord01; + psSphere skyCoord02; + #define DEG_INC 15.0 + + for (psF32 R = -90.0 ; R <= 90.0 ; R+= DEG_INC) { + for (psF32 D = -90.0 ; D <= 90.0 ; D+= DEG_INC) { + if ((fabs(R) != 90.0) && (fabs(D) != 90.0)) { + skyCoord01.r = DEG_TO_RAD(R); + skyCoord01.d = DEG_TO_RAD(D); + p_psProject(&planeCoord01, &skyCoord01, myFPA->projection); + p_psDeproject(&skyCoord02, &planeCoord01, myFPA->projection); + printf("(%.2fr %.2fd) (%.2fr %.2fd) -> (%.2f %.2f) -> (%.2fr %.2fd)", R, D, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d); + if ((fabs(skyCoord01.r - skyCoord02.r) < FLT_EPSILON) && + (fabs(skyCoord01.d - skyCoord02.d) < FLT_EPSILON)) { + printf(": CORRECT\n"); + } else { + printf(": WRONG\n"); + } + } + } + } + psFree(myFPA); + return(0); + } + if (0) { + // This loop goes from (X, Y) -> (R, D) -> (X, Y) + #define SPACE_INC 4.0 + for(testCoord.x=-CELL_HEIGHT;testCoord.x<=CELL_HEIGHT;testCoord.x+=SPACE_INC) + { + for (testCoord.y=-CELL_WIDTH;testCoord.y<=CELL_WIDTH;testCoord.y+=SPACE_INC) { + psPlane planeCoord01; + psPlane planeCoord02; + psSphere skyCoord01; + psSphere skyCoord02; + p_psDeproject(&skyCoord01, &testCoord, myFPA->projection); + p_psProject(&planeCoord01, &skyCoord01, myFPA->projection); + p_psDeproject(&skyCoord02, &planeCoord01, myFPA->projection); + p_psProject(&planeCoord02, &skyCoord02, myFPA->projection); + printf("Plane: (%.2f %.2f) -> (%.2fr %.2fd) -> (%.2f %.2f)\n", + testCoord.x, testCoord.y, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y); + /* + printf("Plane: (%.2f %.2f) -> (%.2f %.2f) -> (%.2f %.2f)\n", + testCoord.x, testCoord.y, planeCoord01.x, planeCoord01.y, + planeCoord02.x, planeCoord02.y); + printf("Sphere: (%.2f %.2f) -> (%.2f %.2f)\n", + skyCoord01.r, skyCoord01.d, skyCoord02.r, skyCoord02.d); + printf("Plane: (%.2f %.2f) -> (%.2fd %.2fr) -> (%.2f %.2f) -> (%.2fd %.2fr) -> (%.2f %.2f)\n", + testCoord.x, testCoord.y, + skyCoord01.r, skyCoord01.d, + planeCoord01.x, planeCoord01.y, + skyCoord02.r, skyCoord02.d, + planeCoord02.x, planeCoord02.y); + */ + } + } + psFree(myFPA); + return(0); + } + // + // We iterate through all cells on all chips on the fpa. We determine + // the expected fpaCcoord. + // + + for (psS32 chip=0;chippmCoordChipToCell(): x coord was %d (%f), should be %d\n", (psS32) cellCoord.x, cellCoord.x, x); + testStatus = 1; + } + if (y != (psS32) cellCoord.y) { + printf("TEST ERROR: pmCoordFPAToChip()->pmCoordChipToCell(): y coord was %d (%f), should be %d\n", (psS32) cellCoord.y, cellCoord.y, y); + testStatus = 1; + } + + pmCoordCellToChip(&testCoord, &cellCoord, myCell); + if (fabs(testCoord.x - chipCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToChip() x coord was %.2f, should be %d\n", cellCoord.x, x); + testStatus = 1; + } + if (fabs(testCoord.y - chipCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToChip() y coord was %.2f, should be %d\n", cellCoord.y, y); + testStatus = 1; + } + + pmCell *myCell2 = pmCellInChip(&chipCoord, tmpChip); + if (myCell2 != myCell) { + printf("TEST ERROR: pmCellInChip() != pmCellInChip(pmChipInFPA()) (%p %p)\n", myCell2, myCell); + testStatus = 1; + } + + pmCoordChipToFPA(&testCoord, &chipCoord, tmpChip); + if (fabs(testCoord.x - x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordChipToFPA() x coord was %.2f, should be %d\n", cellCoord.x, x); + testStatus = 1; + } + if (fabs(testCoord.y - fpaCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordChipToFPA() y coord was %.2f, should be %.2f\n", cellCoord.y, fpaCoord.y); + testStatus = 1; + } + + pmCoordFPAToTP(&testCoord, &fpaCoord, 0.0, 0.0, myFPA); + if (fabs(testCoord.x - fpaCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordFPAToTP() x coord was %.2f, should be %d\n", cellCoord.x, x); + testStatus = 1; + } + if (fabs(testCoord.y - fpaCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordFPAToTP() y coord was %.2f, should be %d\n", cellCoord.y, y); + testStatus = 1; + } + + // + // Test pmCoordTPToSky() -> pmCoordSkyToTP() + // + if (1) { + psSphere *rc = pmCoordTPToSky(skyCoord, &testCoord, myFPA->projection); + if (rc == NULL) { + printf("pmCoordTPToSky() failed.\n"); + } else { + psPlane *rc = pmCoordSkyToTP(&tpCoord, skyCoord, myFPA->projection); + if (rc == NULL) { + printf("pmCoordSkyToTP() failed.\n"); + } else { + if (fabs(testCoord.x - tpCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordTPToSky()/pmCoordSkyToTP() x coord was %.2f, should be %.2f\n", tpCoord.x, testCoord.x); + testStatus = 1; + } + if (fabs(testCoord.y - tpCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordTPToSky()/pmCoordSkyToTP() y coord was %.2f, should be %.2f\n", tpCoord.y, testCoord.y); + testStatus = 1; + } + if (VERBOSE) { + printf("(%.2f %.2f) -> (%.2f %.2f) -> (%.2f %.2f)\n", testCoord.x, testCoord.y, skyCoord->r, skyCoord->d, tpCoord.x, tpCoord.y); + } + } + } + } + + // + // Test pmCoordCellToSky() -> pmCoordSkyToCell() + // + if (1) { + psPlane tmpCellCoord; + psSphere *rc = pmCoordCellToSky(skyCoord, &cellCoord, 0.0, 0.0, myCell); + if (rc == NULL) { + printf("pmCoordCellToSky() failed.\n"); + } else { + psPlane *rc = pmCoordSkyToCell(&tmpCellCoord, skyCoord, 0.0, 0.0, myCell); + if (rc == NULL) { + printf("pmCoordSkyToCell() failed.\n"); + } else { + if (fabs(cellCoord.x - tmpCellCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToSky()/pmCoordSkyToCell() x coord was %.2f, should be %.2f\n", tmpCellCoord.x, cellCoord.x); + testStatus = 1; + } + if (fabs(cellCoord.y - tmpCellCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToSky()/pmCoordSkyToCell() y coord was %.2f, should be %.2f\n", tmpCellCoord.y, cellCoord.y); + testStatus = 1; + } + if (VERBOSE) { + printf("(%.2f %.2f) -> (%.2f %.2f) -> (%.2f %.2f)\n", testCoord.x, testCoord.y, skyCoord->r, skyCoord->d, tmpCellCoord.x, tmpCellCoord.y); + } + } + } + } + + // + // Test pmCoordCellToSkyQuick() -> pmCoordSkyToCellQuick() + // I'm not sure how to test this in a system with chip and cell gaps. + // There's no way to create an accurate polynomial transform from + // a cell to the sky where there are cell, or chip gaps. + // + if ((NUM_CHIPS == 1) && (NUM_CELLS == 1)) { + psPlane tmpCellCoord; + psSphere *rc = pmCoordCellToSkyQuick(skyCoord, &cellCoord, myCell); + if (rc == NULL) { + printf("pmCoordCellToSkyQuick() failed.\n"); + } else { + psPlane *rc = pmCoordSkyToCellQuick(&tmpCellCoord, skyCoord, myCell); + if (rc == NULL) { + printf("pmCoordSkyToCellQuick() failed.\n"); + } else { + if (fabs(cellCoord.x - tmpCellCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToSky()/pmCoordSkyToCell() x coord was %.2f, should be %.2f\n", tmpCellCoord.x, cellCoord.x); + testStatus = 1; + } + if (fabs(cellCoord.y - tmpCellCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToSky()/pmCoordSkyToCell() y coord was %.2f, should be %.2f\n", tmpCellCoord.y, cellCoord.y); + testStatus = 1; + } + if (VERBOSE) { + printf("(%.2f %.2f) -> (%.2f %.2f) -> (%.2f %.2f)\n", testCoord.x, testCoord.y, skyCoord->r, skyCoord->d, tmpCellCoord.x, tmpCellCoord.y); + } + } + } + } + + pmCoordCellToFPA(&testCoord, &cellCoord, myCell); + if (fabs(testCoord.x - fpaCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToFPA() x coord was %.2f, should be %d\n", cellCoord.x, x); + testStatus = 1; + } + if (fabs(testCoord.y - fpaCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordCellToFPA() y coord was %.2f, should be %d\n", cellCoord.y, y); + testStatus = 1; + } + + pmCoordTPToFPA(&testCoord, &fpaCoord, 0.0, 0.0, myFPA); + if (fabs(testCoord.x - fpaCoord.x) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordTPToFPA() x coord was %.2f, should be %d\n", cellCoord.x, x); + testStatus = 1; + } + if (fabs(testCoord.y - fpaCoord.y) > FLT_EPSILON) { + printf("TEST ERROR: pmCoordTPToFPA() y coord was %.2f, should be %d\n", cellCoord.y, y); + testStatus = 1; + } + } + } + } + } + } + psFree(myFPA); + psFree(skyCoord); + + return(testStatus); +} + +/****************************************************************************** +test4(): This routine wil test the pmFPACheckParents() function. We generate +an pmFPA hierarchy, then set the parents of each readout/cell/chip to NULL, +then call pmFPACheckParents() to restore them, then we ensure they were +restored. + *****************************************************************************/ +psS32 test4( void ) +{ + psS32 testStatus = 0; + + // + // Generate a pmFPA hierarchy. + // + pmFPA *tmpFPA = genSystem(); + + // + // We set the parents of each readout/cell/chip to NULL. + // + for (psS32 chipID = 0; chipID < tmpFPA->chips->n ; chipID++) { + pmChip *tmpChip = (pmChip *) tmpFPA->chips->data[chipID]; + tmpChip->parent = NULL; + + for (psS32 cellID = 0; cellID < tmpChip->cells->n ; cellID++) { + pmCell *tmpCell = (pmCell *) tmpChip->cells->data[cellID]; + tmpCell->parent = NULL; + + for (psS32 readoutID = 0; readoutID < tmpCell->readouts->n ; readoutID++) { + pmReadout *tmpReadout = (pmReadout *) tmpCell->readouts->data[readoutID]; + tmpReadout->parent = NULL; + } + } + } + + // + // Ensure that pmFPACheckParents() returned FALSE. + // + psBool rc = pmFPACheckParents(tmpFPA); + if (rc != false) { + printf("TEST ERROR: pmCheckParents() returned TRUE.\n"); + testStatus = 1; + } + + // + // Ensure that the parent members are right. + // + for (psS32 chipID = 0; chipID < tmpFPA->chips->n ; chipID++) { + pmChip *tmpChip = (pmChip *) tmpFPA->chips->data[chipID]; + if (tmpChip->parent != tmpFPA) { + printf("TEST ERROR: pmCheckParents() did not restore Chip->parent.\n"); + testStatus = 2; + } + + for (psS32 cellID = 0; cellID < tmpChip->cells->n ; cellID++) { + pmCell *tmpCell = (pmCell *) tmpChip->cells->data[cellID]; + if (tmpCell->parent != tmpChip) { + printf("TEST ERROR: pmCheckParents() did not restore Cell->parent.\n"); + testStatus = 3; + } + + for (psS32 readoutID = 0; readoutID < tmpCell->readouts->n ; readoutID++) { + pmReadout *tmpReadout = (pmReadout *) tmpCell->readouts->data[readoutID]; + if (tmpReadout->parent != tmpCell) { + printf("TEST ERROR: pmCheckParents() did not restore Readout->parent.\n"); + testStatus = 4; + } + } + } + } + + psFree(tmpFPA); + return(testStatus); +} + +/****************************************************************************** +test5(): This routine wil test the pmFPASelectChip() and pmFPAExcludeChip() +functions. We generate an pmFPA hierarchy, then set the ->valid members with +those routines, then verify. + *****************************************************************************/ +psS32 test5( void ) +{ + psS32 testStatus = 0; + pmChip *tmpChip = NULL; + + // + // Generate a pmFPA hierarchy. + // + pmFPA *tmpFPA = genSystem(); + + // + // We test the ->valid member for each chip. + // + for (psS32 i = 0 ; i < tmpFPA->chips->n ; i++) { + tmpChip = (pmChip *) tmpFPA->chips->data[i]; + if ((tmpChip == NULL) || (tmpChip->valid != false)) { + printf("TEST ERROR: Could not properly generate an FPA hierarchy.\n"); + testStatus = 1; + } + } + + // + // Exclude chip number 0, include all others, then test return value + // + psS32 numChips = pmFPAExcludeChip(tmpFPA, 0); + if (numChips != (NUM_CHIPS-1)) { + printf("TEST ERROR: pmFPAExcludeChip() did not return the correct number of chips.\n"); + testStatus = 2; + } + + // + // We test the ->valid member for each chip. + // + tmpChip = (pmChip *) tmpFPA->chips->data[0]; + if (tmpChip->valid != false) { + printf("TEST ERROR: pmFPAExcludeChip() did not set the proper chip->valid to FALSE.\n"); + testStatus = 3; + } + for (psS32 i = 1 ; i < tmpFPA->chips->n ; i++) { + pmChip *tmpChip = (pmChip *) tmpFPA->chips->data[i]; + if (tmpChip->valid != true) { + printf("TEST ERROR: pmFPAExcludeChip() did not set the proper chip->valids to FALSE.\n"); + testStatus = 4; + } + } + + + // + // Include chip number 0, exclude all others, then test return value + // + psBool tmpBool = pmFPASelectChip(tmpFPA, 0); + if (tmpBool != true) { + printf("TEST ERROR: pmFPASelectChip() returned FALSE.\n"); + testStatus = 5; + } + + // + // We test the ->valid member for each chip. + // + tmpChip = (pmChip *) tmpFPA->chips->data[0]; + if (tmpChip->valid != true) { + printf("TEST ERROR: pmFPASelectChip() did not set the proper chip->valid to FALSE.\n"); + testStatus = 6; + } + for (psS32 i = 1 ; i < tmpFPA->chips->n ; i++) { + pmChip *tmpChip = (pmChip *) tmpFPA->chips->data[i]; + if (tmpChip->valid != false) { + printf("TEST ERROR: pmFPASelectChip() did not set the proper chip->valids to FALSE.\n"); + testStatus = 7; + } + } + + psFree(tmpFPA); + return(testStatus); +} Index: /branches/rel-1-1/psModules/test/camera/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/camera/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/camera/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +.deps +.libs +Makefile +Makefile.in +temp +tst_pmAstrometry Index: /branches/rel-1-1/psModules/test/camera/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/camera/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/camera/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +AM_LDFLAGS = -L$(top_builddir)/src -lpsmodules $(PSMODULES_LIBS) +AM_CFLAGS = @AM_CFLAGS@ $(PSMODULES_CFLAGS) $(SRCINC) +AM_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) + +check_PROGRAMS = + +test: check Index: /branches/rel-1-1/psModules/test/camera/tst_pmAstrometry.c =================================================================== --- /branches/rel-1-1/psModules/test/camera/tst_pmAstrometry.c (revision 12167) +++ /branches/rel-1-1/psModules/test/camera/tst_pmAstrometry.c (revision 12167) @@ -0,0 +1,615 @@ +/** @file tst_pmAstrometry.c + * + * @brief Contains the tests: pmAstrometry.[ch]. The pmxxxAlloc() + * and psFree() functionality are used here. + * + * @author GLG, MHPCC + * + * XXX: Untested: pmFPACheckParents() + * XXX: Create the pmHDU alloc/free function, test them here + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-01 01:58:04 $ + * + * Copyright 2004-2005 Maui High Performance Computing Center, University of Hawaii + */ + +#include "config.h" +#include +#include +#include "psTest.h" +#include "pslib_strict.h" +#include "pmAstrometry.h" + +static psS32 testFPAAlloc(void); +static psS32 testChipAlloc(void); +static psS32 testCellAlloc(void); +static psS32 testReadoutAlloc(void); + +testDescription tests[] = { + {testFPAAlloc,739,"pmFPAAlloc",0,false}, + {testChipAlloc,740,"pmChipAlloc",0,false}, + {testCellAlloc,741,"pmCellAlloc",0,false}, + {testReadoutAlloc,742,"pmReadoutAlloc",0,false}, + {NULL} + }; + +#define CHIP_ALLOC_NAME "ChipName" +#define CELL_ALLOC_NAME "CellName" +#define MISC_NUM 32 +#define MISC_NAME "META00" +#define MISC_NAME2 "META01" +#define NUM_BIAS_DATA 10 +#define TEST_NUM_ROWS 32 +#define TEST_NUM_COLS 32 + +psPlaneTransform *PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM() +{ + psPlaneTransform *pt = psPlaneTransformAlloc(1, 1); + pt->x->coeff[1][0] = 1.0; + pt->y->coeff[0][1] = 1.0; + return(pt); +} + +psPlaneDistort *PS_CREATE_4D_IDENTITY_PLANE_DISTORT() +{ + psPlaneDistort *pd = psPlaneDistortAlloc(1, 1, 1, 1); + pd->x->coeff[1][0][0][0] = 1.0; + pd->y->coeff[0][1][0][0] = 1.0; + return(pd); +} + +/****************************************************************************** +generateSimpleFPA(): This function generates a pmFPA data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmFPA *generateSimpleFPA() +{ + psBool rc; + pmFPA* fpa = pmFPAAlloc(psMetadataAlloc()); + + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc() returned a NULL."); + return(NULL); + } + + // + // Test and create camera metadata. + // + if (fpa->camera == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: fpa->camera is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) fpa->camera, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to fpa->camera."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, fpa->camera, MISC_NAME); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from fpa->camera."); + psFree(fpa); + return(NULL); + } + } + + // + // Create various transforms and projections. + // + fpa->fromTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + fpa->toTangentPlane = PS_CREATE_4D_IDENTITY_PLANE_DISTORT(); + fpa->projection = psProjectionAlloc(0.0,0.0,10.0,10.0,PS_PROJ_TAN); + + // + // Ensure fpa concepts metadata was allocated properly. + // + if (fpa->concepts == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set fpa->concepts."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32(fpa->concepts, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add data to fpa->concepts."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, fpa->concepts, MISC_NAME); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from fpa->concepts."); + psFree(fpa); + return(NULL); + } + } + + // + // Create ->analysis metadata. + // + fpa->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(fpa->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the fpa->chips array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + // + // Create ->phu metadata. + // + fpa->phu = psMetadataAlloc(); + rc = psMetadataAddS32(fpa->phu, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + return(fpa); +} + + +psS32 main(psS32 argc, char* argv[]) +{ + psLogSetLevel(PS_LOG_INFO); + psLogSetFormat("HLNM"); + + return ! runTestSuite(stderr,"pmAstrometry",tests,argc,argv); +} + +/****************************************************************************** +testFPAAlloc() + 1: We ensure that pmFPAAlloc() properly allocates a pmFPA struct. + 2: We populate the members with real data to ensure they are being + free'ed correctly. + *****************************************************************************/ +static psS32 testFPAAlloc(void) +{ + psMetadata *camera = psMetadataAlloc(); + pmFPA* fpa = pmFPAAlloc(camera); + + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc() returned a NULL."); + return 1; + } + + if (fpa->fromTangentPlane != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->fromTangentPlane to NULL."); + return 2; + } + + if (fpa->toTangentPlane != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->toTangentPlane to NULL."); + return 3; + } + if (fpa->projection != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->projection to NULL."); + return 4; + } + + if (fpa->concepts == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->concepts."); + return 5; + } + + if (fpa->analysis != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->analysis to NULL."); + return 6; + } + + if (fpa->camera != camera) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->camera."); + return 7; + } + + if (fpa->chips == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->chips."); + return 8; + } + + if (fpa->hdu != NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc did not set ->hdu to NULL."); + return 9; + } + psFree(fpa); + + // + // Populate the pmFPA struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: generateSimpleFPA() returned NULL."); + return(15); + } + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleChip(): This function generates a pmChip data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmChip *generateSimpleChip(pmFPA *fpa) +{ + psBool rc; + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + if (chip == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmChipAlloc returned a NULL."); + return(NULL); + } + chip->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + chip->fromFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + // + // We already ensured that chip->concepts was working properly. + // + + // + // Create ->analysis metadata. + // + chip->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(chip->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the chip->cells array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + return(chip); +} + +static psS32 testChipAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + if (chip == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmChipAlloc returned a NULL."); + return 1; + } + + if (chip->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->col0 set improperly.\n"); + return 5; + } + + if (chip->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->row0 set improperly.\n"); + return 6; + } + + if (chip->toFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->toChip set improperly.\n"); + return 7; + } + + if (chip->fromFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->toFPA set improperly.\n"); + return 8; + } + + if (chip->concepts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->concepts set improperly.\n"); + return 21; + } else { + psMetadataItem *tmpMeta = psMetadataLookup(chip->concepts, "CHIP.NAME"); + if (0 != strcmp((char *) tmpMeta->data.V, CHIP_ALLOC_NAME)) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: The metadata was set improperly.\n"); + return (32); + } + // XXX: Code a test to ensure the metadata has the correct type + } + + if (chip->analysis != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->analysis set improperly.\n"); + return 10; + } + + if (chip->cells == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->cells set improperly.\n"); + return 22; + } + + if (chip->parent != fpa) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->parent set improperly.\n"); + return 23; + } + + if (chip->valid != false) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->valid set improperly.\n"); + return 24; + } + + if (chip->hdu != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: chip->hdu set improperly.\n"); + return 25; + } + psFree(fpa); + + // + // Populate the pmChip struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleCell(): This function generates a pmCell data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmCell *generateSimpleCell(pmFPA *fpa, pmChip *chip) +{ + psBool rc; + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + if (cell == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmCellAlloc returned a NULL."); + return(NULL); + } + cell->toChip = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + cell->toFPA = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + cell->toSky = PS_CREATE_2D_IDENTITY_PLANE_TRANSFORM(); + // + // We already ensured that cell->concepts was working properly. + // + + // + // Test camera metadata. + // + if (cell->camera == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->camera is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) cell->camera, PS_LIST_HEAD, MISC_NAME2, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to cell->camera."); + psFree(fpa); + return(NULL); + } + psS32 tmpS32 = psMetadataLookupS32(&rc, cell->camera, MISC_NAME2); + if ((rc == false) || (tmpS32 != MISC_NUM)) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not read metadata from cell->camera."); + psFree(fpa); + return(NULL); + } + } + + // + // Create ->analysis metadata. + // + cell->analysis = psMetadataAlloc(); + rc = psMetadataAddS32(cell->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + + // + // We test the cell->readouts array later. + // + + // + // How to test the p_pmHDU *hdu member? + // + + return(cell); +} + +static psS32 testCellAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + if (cell == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmCellAlloc returned a NULL.n"); + return 3; + } + + if (cell->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->col0 set improperly.\n"); + return 5; + } + + if (cell->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->row0 set improperly.\n"); + return 6; + } + + if (cell->toChip != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toChip set improperly.\n"); + return 7; + } + + if (cell->toFPA != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toFPA set improperly.\n"); + return 8; + } + + if (cell->toSky != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->toSky set improperly.\n"); + return 9; + } + + if (cell->concepts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->concepts set improperly.\n"); + return 21; + } else { + psMetadataItem *tmpMeta = psMetadataLookup(cell->concepts, "CELL.NAME"); + if (0 != strcmp((char *) tmpMeta->data.V, CELL_ALLOC_NAME)) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: The metadata was set improperly.\n"); + return (32); + } + // XXX: Code a test to ensure the metadata has the correct type + } + + if (cell->camera != fpa->camera) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->camera set improperly.\n"); + return 20; + } + + if (cell->analysis != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->analysis set improperly.\n"); + return 10; + } + + if (cell->readouts == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->readouts set improperly.\n"); + return 22; + } + + if (cell->parent != chip) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->parent set improperly.\n"); + return 23; + } + + if (cell->valid != false) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->valid set improperly.\n"); + return 24; + } + + if (cell->hdu != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: cell->hdu set improperly.\n"); + return 27; + } + psFree(fpa); + + // + // Populate the pmCell struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + cell = generateSimpleCell(fpa, chip); + psFree(fpa); + + return(0); +} + +/****************************************************************************** +generateSimpleReadout(): This function generates a pmReadout data structure and then +populates its members with real data. We do this to ensure that the data is +later being psFree()'ed correctly. + *****************************************************************************/ +pmReadout *generateSimpleReadout(pmFPA *fpa, pmChip *chip, pmCell *cell) +{ + psBool rc; + pmReadout *readout = pmReadoutAlloc(cell); + if (readout == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmReadoutAlloc returned a NULL."); + return(NULL); + } + readout->image = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + readout->mask = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_U8); + readout->weight = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + + // + // Create a psList of bias data. + // + for (psS32 i = 0 ; i < NUM_BIAS_DATA ; i++) { + psImage *tmpImage = psImageAlloc(TEST_NUM_COLS, TEST_NUM_ROWS, PS_TYPE_F32); + if (readout->bias == NULL) { + readout->bias = psListAlloc(tmpImage); + } else { + psListAdd(readout->bias, PS_LIST_HEAD, tmpImage); + } + } + + // + // Test readout->analysis metadata. + // + if (readout->analysis == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: readout->analysis is NULL."); + psFree(fpa); + return(NULL); + } else { + rc = psMetadataAddS32((psMetadata *) readout->analysis, PS_LIST_HEAD, MISC_NAME, 0, NULL, MISC_NUM); + if (rc == false) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: could not add metadata to readout->analysis."); + psFree(fpa); + return(NULL); + } + } + + return(readout); +} + + +static psS32 testReadoutAlloc(void) +{ + pmFPA* fpa = generateSimpleFPA(); + pmChip *chip = pmChipAlloc(fpa, CHIP_ALLOC_NAME); + pmCell *cell = pmCellAlloc(chip, (psMetadata *) fpa->camera, CELL_ALLOC_NAME); + pmReadout *readout = pmReadoutAlloc(cell); + if (readout == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmReadoutAlloc returned a NULL.\n"); + return 4; + } + + if (readout->col0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->col0 set improperly.\n"); + return 5; + } + + if (readout->row0 != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->row0 set improperly.\n"); + return 6; + } + + if (readout->colBins != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->colBins set improperly.\n"); + return 7; + } + + if (readout->rowBins != -1) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->colBins set improperly.\n"); + return 8; + } + + if (readout->image != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->image set improperly.\n"); + return 10; + } + + if (readout->mask != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->mask set improperly.\n"); + return 12; + } + + if (readout->weight != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->weight set improperly.\n"); + return 14; + } + + if (readout->bias != NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->bias set improperly.\n"); + return 16; + } + + if (readout->analysis == NULL) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->analysis set improperly.\n"); + return 18; + } + + if (readout->parent != cell) { + psLogMsg(__func__, PS_LOG_ERROR, "TEST ERROR: pmReadout->parent set improperly.\n"); + return 20; + } + psFree(fpa); + + // + // Populate the pmReadout struct with real data to ensure they were + // psFree()'ed correctly. + // + fpa = generateSimpleFPA(); + chip = generateSimpleChip(fpa); + cell = generateSimpleCell(fpa, chip); + readout = generateSimpleReadout(fpa, chip, cell); + psFree(fpa); + + return(0); +} Index: /branches/rel-1-1/psModules/test/concepts/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/concepts/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/concepts/.cvsignore (revision 12167) @@ -0,0 +1,4 @@ +.deps +.libs +Makefile +Makefile.in Index: /branches/rel-1-1/psModules/test/concepts/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/concepts/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/concepts/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +AM_LDFLAGS = -L$(top_builddir)/src -lpsmodules $(PSMODULES_LIBS) +AM_CFLAGS = @AM_CFLAGS@ $(PSMODULES_CFLAGS) $(SRCINC) +AM_CPPFLAGS = $(SRCINC) $(PSLIB_CFLAGS) + +check_PROGRAMS = + +test: check Index: /branches/rel-1-1/psModules/test/config/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/config/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/config/.cvsignore (revision 12167) @@ -0,0 +1,7 @@ +.deps +.libs +Makefile +Makefile.in +temp +tst_pmConfig +SampleIPPConfig Index: /branches/rel-1-1/psModules/test/config/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/config/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/config/Makefile.am (revision 12167) @@ -0,0 +1,16 @@ +AM_LDFLAGS = -L$(top_builddir)/src -lpsmodules $(PSMODULES_LIBS) +AM_CFLAGS = @AM_CFLAGS@ $(PSMODULES_CFLAGS) $(SRCINC) + +check_PROGRAMS = + +check_DATA = \ + SampleIPPConfig + +SampleIPPConfig: data/SampleIPPConfig + cp $? $@ + +EXTRA_DIST = data + +CLEANFILES = $(check_DATA) *~ + +test: check Index: /branches/rel-1-1/psModules/test/config/data/SampleIPPConfig =================================================================== --- /branches/rel-1-1/psModules/test/config/data/SampleIPPConfig (revision 12167) +++ /branches/rel-1-1/psModules/test/config/data/SampleIPPConfig (revision 12167) @@ -0,0 +1,32 @@ +### Example .ipprc file + +### Database configuration +DBSERVER STR ippdb.ifa.hawaii.edu # Database host name (for psDBInit) +DBUSER STR ipp # Database user name (for psDBInit) +DBPASSWORD STR password # Database password (for psDBInit) + +### Setups for each camera system +CAMERAS METADATA + MEGACAM_RAW STR megacam_raw.config + MEGACAM_SPLICE STR megacam_splice.config + GPC1_RAW STR gpc1_raw.config + LRIS_BLUE STR lris_blue.config + LRIS_RED STR lris_red.config +END + +### psLib setup +#TIME STR /home/mithrandir/price/pan-starrs/jhroot/i686-pc-linux-gnu/etc/pslib/psTime.config # Time configuration file +LOGLEVEL S32 3 # Logging level; 3=INFO +LOGFORMAT STR HLNM # Log format +LOGDEST STR STDOUT # Log destination +TRACE METADATA # Trace levels + dummyTraceFunc01 S32 1 + dummyTraceFunc02 S32 2 +END +ARBITRARY_STRING_S32 S32 20 +ARBITRARY_STRING_F32 F32 21.0 +ARBITRARY_STRING_F64 F64 22.0 +ARBITRARY_STRING_STR STR 19.0 +ARBITRARY_STRING_BOOL_T BOOL true +ARBITRARY_STRING_BOOL_F BOOL false + Index: /branches/rel-1-1/psModules/test/config/tst_pmConfig.c =================================================================== --- /branches/rel-1-1/psModules/test/config/tst_pmConfig.c (revision 12167) +++ /branches/rel-1-1/psModules/test/config/tst_pmConfig.c (revision 12167) @@ -0,0 +1,277 @@ +/** @file tst_pmConfig.c + * + * @brief Contains the tests for pmConfig.c: + * + * test00: This code will test the pmConfig() routine. + * + * @author GLG, MHPCC + * + * XXX: Untested: + * pmConfigValidateCamera() + * pmConfigCameraFromHeader() + * pmConfigRecipeFromCamera() + * pmConfigDB() + * + * XXXX: Must determine what to do with NULL arguments, then test it. + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-10-13 21:15:45 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ +#include "psTest.h" +#include "pslib.h" +#include "pmConfig.h" + +static int test00(void); +testDescription tests[] = { + {test00, 000, "pmConfig:", true, false}, + {NULL} + }; + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + // + // We include the function names here in psTraceSetLevel() commands for + // debugging convenience. There is no guarantee that this list of functions + // is complete. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("readConfig", 0); + psTraceSetLevel("pmConfigRead", 0); + psTraceSetLevel("pmConfigValidateCamera", 0); + psTraceSetLevel("pmConfigCameraFromHeader", 0); + psTraceSetLevel("pmConfigRecipeFromCamera", 0); + psTraceSetLevel("pmConfigDB", 0); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + +/****************************************************************************** +test00(): +XXX: untested: + TIME: + LOGFORMAT: tested implicitly via the stdout files. + Command line arguments for logging shall override config file defaults. + *****************************************************************************/ +int test00( void ) +{ + psTraceSetLevel(".", 0); + bool testStatus = true; + psBool rc = 0; + psString str[3]; + str[0] = "ARGS:"; + str[1] = "-site"; + str[2] = "SampleIPPConfig"; + + psMetadata *site = psMetadataAlloc(); + psMetadata *camera = psMetadataAlloc(); + psMetadata *recipe = psMetadataAlloc(); + psS32 argc = 3; + + + psMetadata *nullMD = NULL; + if (0) { + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL site pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(NULL, &camera, &recipe, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL *site pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&nullMD, &camera, &recipe, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL camera pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&site, NULL, &recipe, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL *camera pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&site, &nullMD, &recipe, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL recipe pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&site, &camera, NULL, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL *recipe pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&site, &camera, &nullMD, &argc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with NULL argv pointer. Should generate ERROR, return false.\n"); + rc = pmConfigRead(&site, &camera, &recipe, &argc, NULL, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with negative argc. Should generate ERROR, return false.\n"); + psS32 tmpArgc = -1; + rc = pmConfigRead(&site, &camera, &recipe, &tmpArgc, str, "RecipeName"); + if (rc == true) { + printf("TEST ERROR: pmConfigRead() returned true\n"); + testStatus = false; + } + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmConfigRead() with acceptable arguments.\n"); + + rc = pmConfigRead(&site, &camera, &recipe, &argc, str, "RecipeName"); + if (rc == false) { + printf("TEST ERROR: pmConfigRead() returned False\n"); + testStatus = false; + } else { + // + // Ensure that the various trace and logging values are set properly + // + if (1 != psTraceGetLevel("dummyTraceFunc01")) { + printf("TEST ERROR: failed to properly set tracelevel for dummyTraceFunc01\n"); + printf(" tracelevel was %d, should be 1.\n", psTraceGetLevel("dummyTraceFunc01")); + testStatus = false; + } + + if (2 != psTraceGetLevel("dummyTraceFunc02")) { + printf("TEST ERROR: failed to properly set tracelevel for dummyTraceFunc02\n"); + printf(" tracelevel was %d, should be 2.\n", psTraceGetLevel("dummyTraceFunc02")); + testStatus = false; + } + + if (1 != psLogGetDestination()) { + printf("TEST ERROR: failed to properly set log destination.\n"); + printf(" it was %d, should be 1\n", psLogGetDestination()); + testStatus = false; + } + + if (3 != psLogGetLevel()) { + printf("TEST ERROR: failed to properly set log level.\n"); + printf(" it was %d, should be 3\n", psLogGetLevel()); + testStatus = false; + } + + // + // Test the several arbitrary config file strings. + // + psS32 tmpInt = psMetadataLookupS32(&rc, site, "ARBITRARY_STRING_S32"); + if ((rc == false) || (tmpInt != 20)) { + printf("TEST ERROR: failed to properly set metadata integer ARBITRARY_STRING_S32.\n"); + testStatus = false; + } + + psF32 tmpFloat = psMetadataLookupS32(&rc, site, "ARBITRARY_STRING_F32"); + if ((rc == false) || (tmpFloat != 21.0)) { + printf("TEST ERROR: failed to properly set metadata float ARBITRARY_STRING_F32.\n"); + testStatus = false; + } + + psF64 tmpDub = psMetadataLookupS32(&rc, site, "ARBITRARY_STRING_F64"); + if ((rc == false) || (tmpDub != 22.0)) { + printf("TEST ERROR: failed to properly set metadata double ARBITRARY_STRING_F64.\n"); + testStatus = false; + } + + psBool tmpBool; + tmpBool = psMetadataLookupS32(&rc, site, "ARBITRARY_STRING_BOOL_T"); + if ((rc == false) || (tmpBool != true)) { + printf("TEST ERROR: failed to properly set metadata double ARBITRARY_STRING_BOOL_T.\n"); + testStatus = false; + } + tmpBool = psMetadataLookupS32(&rc, site, "ARBITRARY_STRING_BOOL_F"); + if ((rc == false) || (tmpBool != false)) { + printf("TEST ERROR: failed to properly set metadata double ARBITRARY_STRING_BOOL_F.\n"); + testStatus = false; + } + + // + // Test the database camera metadata keywords. + // + psMetadata *tmpMeta = psMetadataLookupMetadata(&rc, site, "CAMERAS"); + if (rc == false) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS.\n"); + testStatus = false; + } else { + psString tmpStr; + tmpStr = psMetadataLookupStr(&rc, tmpMeta, "MEGACAM_RAW"); + if ((rc == false) || (0 != strcmp(tmpStr, "megacam_raw.config"))) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS->MEGACAM_RAW.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, tmpMeta, "MEGACAM_SPLICE"); + if ((rc == false) || (0 != strcmp(tmpStr, "megacam_splice.config"))) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS->MEGACAM_SPLICE.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, tmpMeta, "GPC1_RAW"); + if ((rc == false) || (0 != strcmp(tmpStr, "gpc1_raw.config"))) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS->GPC1_RAW.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, tmpMeta, "LRIS_BLUE"); + if ((rc == false) || (0 != strcmp(tmpStr, "lris_blue.config"))) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS->LRIS_BLUE.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, tmpMeta, "LRIS_RED"); + if ((rc == false) || (0 != strcmp(tmpStr, "lris_red.config"))) { + printf("TEST ERROR: failed to properly set metadata metadata CAMERAS->LRIS_RED.\n"); + testStatus = false; + } + } + + // + // Test the database metadata keywords. This is somewhat redundant since + // we already test metadat strings. + // + psString tmpStr; + tmpStr = psMetadataLookupStr(&rc, site, "DBSERVER"); + if ((rc == false) || (0 != strcmp(tmpStr, "ippdb.ifa.hawaii.edu"))) { + printf("TEST ERROR: failed to properly set metadata string DBSERVER.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, site, "DBUSER"); + if ((rc == false) || (0 != strcmp(tmpStr, "ipp"))) { + printf("TEST ERROR: failed to properly set metadata string DBUSER.\n"); + testStatus = false; + } + + tmpStr = psMetadataLookupStr(&rc, site, "DBPASSWORD"); + if ((rc == false) || (0 != strcmp(tmpStr, "password"))) { + printf("TEST ERROR: failed to properly set metadata string DBPASSWORD.\n"); + testStatus = false; + } + } + + psFree(site); + psFree(camera); + psFree(recipe); + return(testStatus); +} Index: /branches/rel-1-1/psModules/test/detrend/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/detrend/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +.deps +.libs +Makefile +Makefile.in +temp +tst_pmFlatField +tst_pmMaskBadPixels +tst_pmNonLinear +.tmp_tst_pmNonLinearLookupFile Index: /branches/rel-1-1/psModules/test/detrend/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/detrend/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSMODULES_LIBS) + +check_PROGRAMS = tap_pmShutterCorrection + +CLEANFILES = temp/* core core.* *~ + +test: check Index: /branches/rel-1-1/psModules/test/detrend/tap_pmShutterCorrection.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tap_pmShutterCorrection.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tap_pmShutterCorrection.c (revision 12167) @@ -0,0 +1,430 @@ +#include +#include +#include +#include + +#include "tap.h" + +int main (void) +{ + plan_tests(143); + + diag("pmShutterCorrection tests"); + + // test allocation, free of pmShutterCorrPars + diag("pmShutterCorrParsAlloc tests"); + { + psMemId id = psMemGetId(); + pmShutterCorrection *pars = pmShutterCorrectionAlloc (); + + ok(pars != NULL, "pmShutterCorrPars successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrParsAlloc() failed"); + skip_end(); + + psFree(pars); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test parameter guess (linearly spaced exptimes, TK/TO < 1) + diag("pmShutterCorrectionGuess tests : coarse linear-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 10; + float AK = 5.0; + float TK = 0.1; + float TO = 0.2; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.25; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + ok(pars != NULL, "pmShutterCorrPars successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrParsAlloc() failed"); + + // with coarse linearly-spaced times large compared to TO and TK, + // we can't expect very accurate guesses. the exptime guess is fairly good because + // the largest exptime is much longer than TK or TO + ok(fabs(pars->scale - AK) < 0.5, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.5, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.5, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test parameter guess (linearly spaced exptimes, TK/TO < 1) + diag("pmShutterCorrectionGuess tests : fine linear-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 20; + float AK = 5.0; + float TK = 0.1; + float TO = 0.2; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.1; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + ok(pars != NULL, "pmShutterCorrection successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + + // with fine linearly-spaced times large compared to TO and TK, + // we get a good guess to TK and TO, but since the largest exptime is not + // many times larger than TO, we don't do very well with the AK + ok(fabs(pars->scale - AK) < 0.5, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.05, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.05, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test parameter guess (log spaced exptimes, TK/TO < 1) + diag("pmShutterCorrectionGuess tests : log-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 40; + float AK = 5.0; + float TK = 0.1; + float TO = 0.2; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = pow(10.0, -2 + i*0.1); + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrectionsuccessfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + + // test parameter guess (linearly spaced exptimes, TK/TO > 1) + diag("pmShutterCorrectionGuess tests : coarse linear-spaced exptimes, TK/TO > 1"); + { + psMemId id = psMemGetId(); + + int NPTS = 10; + float AK = 5.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.25; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + ok(pars != NULL, "pmShutterCorrection successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + + // with coarse linearly-spaced times large compared to TO and TK, + // we can't expect very accurate guesses. the exptime guess is fairly good because + // the largest exptime is much longer than TK or TO + ok(fabs(pars->scale - AK) < 0.5, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.5, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.5, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test parameter guess (linearly spaced exptimes, TK/TO > 1) + diag("pmShutterCorrectionGuess tests : fine linear-spaced exptimes, TK/TO > 1"); + { + psMemId id = psMemGetId(); + + int NPTS = 20; + float AK = 5.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.1; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + ok(pars != NULL, "pmShutterCorrection successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionsAlloc() failed"); + + // with fine linearly-spaced times large compared to TO and TK, + // we get a good guess to TK and TO, but since the largest exptime is not + // many times larger than TO, we don't do very well with the AK + ok(fabs(pars->scale - AK) < 0.5, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.05, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.05, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test parameter guess (log spaced exptimes, TK/TO > 1) + diag("pmShutterCorrectionGuess tests : log-spaced exptimes, TK/TO > 1"); + { + psMemId id = psMemGetId(); + + int NPTS = 40; + float AK = 5.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = pow(10.0, -2 + i*0.1); + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *pars = pmShutterCorrectionGuess (exptime, counts); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrection successfully allocated"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale guess is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset guess is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref guess is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(exptime); + psFree(counts); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test non-linear fitting + diag("pmShutterCorrectionFullFit tests : linear-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 20; + float FL = 10000.0; + float AK = 5.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *cntErr = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = cntErr->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.1; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + cntErr->data.F32[i] = AK*sqrt(FL*(exptime->data.F32[i] + TK)) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *guess = pmShutterCorrectionGuess (exptime, counts); + skip_start(guess == NULL, 0, "Skipping tests because pmShutterCorrectionGuess() failed"); + pmShutterCorrection *pars = pmShutterCorrectionFullFit (exptime, counts, cntErr, guess); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrection successfully allocated by FullFit"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionsAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale fit is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset fit is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref fit is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + skip_end(); + + psFree(guess); + psFree(exptime); + psFree(counts); + psFree(cntErr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test non-linear fitting + diag("pmShutterCorrectionFullFit tests : log-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 40; + float FL = 10000.0; + float AK = 1.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *cntErr = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = cntErr->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = pow(10.0, -2 + i*0.1); + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + cntErr->data.F32[i] = AK*sqrt(FL*(exptime->data.F32[i] + TK)) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection*guess = pmShutterCorrectionGuess (exptime, counts); + skip_start(guess == NULL, 0, "Skipping tests because pmShutterCorrectionGuess() failed"); + pmShutterCorrection *pars = pmShutterCorrectionFullFit (exptime, counts, cntErr, guess); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrection successfully allocated by FullFit"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale fit is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset fit is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref fit is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + skip_end(); + + psFree(guess); + psFree(exptime); + psFree(counts); + psFree(cntErr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // XXX should add tests with the input counts scattered with GaussDev... + + // test linear fitting + diag("pmShutterCorrectionLinFit tests : linear-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 20; + float FL = 10000.0; + float AK = 5.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *cntErr = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = cntErr->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = i*0.1; + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + cntErr->data.F32[i] = AK*sqrt(FL*(exptime->data.F32[i] + TK)) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection*guess = pmShutterCorrectionGuess (exptime, counts); + skip_start(guess == NULL, 0, "Skipping tests because pmShutterCorrectionGuess() failed"); + pmShutterCorrection *full = pmShutterCorrectionFullFit (exptime, counts, cntErr, guess); + pmShutterCorrection *pars = pmShutterCorrectionLinFit (exptime, counts, cntErr, NULL, full->offref, 1, 5, 0); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrection successfully allocated by FullFit"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale fit is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset fit is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref fit is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(full); + skip_end(); + + psFree(guess); + psFree(exptime); + psFree(counts); + psFree(cntErr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test linear fitting + diag("pmShutterCorrectionLinFit tests : log-spaced exptimes"); + { + psMemId id = psMemGetId(); + + int NPTS = 40; + float FL = 10000.0; + float AK = 1.0; + float TK = 0.2; + float TO = 0.1; + psVector *exptime = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *counts = psVectorAlloc (NPTS, PS_TYPE_F32); + psVector *cntErr = psVectorAlloc (NPTS, PS_TYPE_F32); + exptime->n = counts->n = cntErr->n = NPTS; + + for (int i = 0; i < exptime->n; i++) { + exptime->data.F32[i] = pow(10.0, -2 + i*0.1); + counts->data.F32[i] = AK*(exptime->data.F32[i] + TK) / (exptime->data.F32[i] + TO); + cntErr->data.F32[i] = AK*sqrt(FL*(exptime->data.F32[i] + TK)) / (exptime->data.F32[i] + TO); + } + + pmShutterCorrection *guess = pmShutterCorrectionGuess (exptime, counts); + skip_start(guess == NULL, 0, "Skipping tests because pmShutterCorrectionGuess() failed"); + pmShutterCorrection *full = pmShutterCorrectionFullFit (exptime, counts, cntErr, guess); + pmShutterCorrection *pars = pmShutterCorrectionLinFit (exptime, counts, cntErr, NULL, full->offref, 1, 5, 0); + + // with fine log-spaced times well-sampling TO and TK, + // we can expect accurate guesses + ok(pars != NULL, "pmShutterCorrection successfully allocated by FullFit"); + skip_start(pars == NULL, 0, "Skipping tests because pmShutterCorrectionAlloc() failed"); + ok(fabs(pars->scale - AK) < 0.01, "scale fit is close enough (got %f vs %f)", pars->scale, AK); + ok(fabs(pars->offset - TK) < 0.01, "offset fit is close enough (got %f vs %f)", pars->offset, TK); + ok(fabs(pars->offref - TO) < 0.01, "offref fit is close enough (got %f vs %f)", pars->offref, TO); + skip_end(); + + psFree(pars); + psFree(full); + skip_end(); + + psFree(guess); + psFree(exptime); + psFree(counts); + psFree(cntErr); + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/detrend/tst_pmFlatField.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tst_pmFlatField.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tst_pmFlatField.c (revision 12167) @@ -0,0 +1,290 @@ +/** @file tst_pmFlatField.c + * + * @brief Contains the tests for pmFlatField.c: + * + * Test A - Divide input image by flat image + * Test B - Mask flat image data + * Test C - Mask flat image data starting with non-null mask + * Test E - Attempt to use null input image + * Test F - Attempt tp use null flat image + * Test G - Attempt to use input image bigger than flat image + * Test H - Attempt to use input image mask bigger than flat image + * Test I - Attempt to use offset greater than input image + * Test J - Attempt to use complex input image + * Test K - Attempt to use complex flat image + * Test L - Attempt to use non-equal input and flat image types + * Test M - Attempt to use non-mask type mask image + * + * XXX: Added a mask argument to pmFlatField(). Must add tests. For now, all + * masks are NULL. + * + * @author Ross Harman, MHPCC + * + * XXX: I added the CELL.TRIMSEC region code but there are not tests for it. + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-11-15 20:09:03 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + + +#include "psTest.h" +#include "pslib.h" +#include "pmFlatField.h" + + +#define PRINT_MATRIX(IMAGE,TYPE,STRING) \ +printf(STRING); \ +printf("\n"); \ +for(int i=IMAGE->numRows-1; i>-1; i--) { \ + for(int j=0; jnumCols; j++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX(IMAGE->type.type)) { \ + printf("%f+%fi ", creal(IMAGE->data.TYPE[i][j]), cimag(IMAGE->data.TYPE[i][j])); \ + } else if(PS_IS_PSELEMTYPE_INT(IMAGE->type.type)) { \ + printf("%d ", (int)IMAGE->data.TYPE[i][j]); \ + } else { \ + printf("%f ", (double)IMAGE->data.TYPE[i][j]); \ + } \ + } \ + printf("\n"); \ +} \ +printf("\n"); + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +psImage *NAME = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(int i=0; inumRows; i++) { \ + for(int j=0; jnumCols; j++) { \ + NAME->data.TYPE[i][j] = VALUE; \ + } \ +} + + +static int testFlatField(void); + + +testDescription tests[] = { + {testFlatField, 753, "pmFlatField", 0, false}, + {NULL} + }; + + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + + +int testFlatField( void ) +{ + // Test A - Divide input image by flat image + printPositiveTestHeader(stdout, "pmFlatField", "Test A - Divide input image by flat image"); + CREATE_AND_SET_IMAGE(inImage,F64,6.0,3,3) + pmReadout *inReadout = pmReadoutAlloc(NULL); + inReadout->image = inImage; + inReadout->row0 = 0; + inReadout->col0 = 0; + CREATE_AND_SET_IMAGE(inMask, U8, 0, 3,3); + inReadout->mask = inMask; + PRINT_MATRIX((inReadout->mask),U8,"Input mask:"); + PRINT_MATRIX(inImage,F64,"Input image:"); + + CREATE_AND_SET_IMAGE(flatImage1,F64,2.0,3,3) + pmReadout *flatReadout = pmReadoutAlloc(NULL); + flatReadout->row0 = 0; + flatReadout->col0 = 0; + flatReadout->image = flatImage1; + PRINT_MATRIX(flatImage1,F64,"Flat image:"); + + if ( !pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test A - Returned false should be true"); + return 1; + } + PRINT_MATRIX(inImage,F64, "Resulting image:"); + printFooter(stdout, "pmFlatField", "Test A - Divide input image by flat image", true); + printf("\n\n\n"); + + + // Test B - Mask flat image data + printPositiveTestHeader(stdout, "pmFlatField", "Test B - Mask flat image data"); + PRINT_MATRIX(inImage, F64, "Input image:"); + CREATE_AND_SET_IMAGE(flatImage2,F64,0.0,3,3) + PRINT_MATRIX(flatImage2, F64, "Flat image:"); + flatReadout->image = flatImage2; + if ( !pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test B - Returned false should be true"); + return 2; + } + PRINT_MATRIX(inReadout->mask, PS_TYPE_MASK_DATA, "Resulting mask:"); + PRINT_MATRIX(inImage,F64,"Resulting image:"); + printFooter(stdout, "pmFlatField", "Test B - Mask flat image data", true); + printf("\n\n\n"); + + + // Test C - Mask flat image data starting with non-null mask + printPositiveTestHeader(stdout, "pmFlatField", "Test C - Mask flat image data starting with non-null mask"); + PRINT_MATRIX(inImage, F64, "Input image:"); + flatImage2->data.F64[0][0] = 3.0; + flatImage2->data.F64[0][1] = -3.0; + PRINT_MATRIX(flatImage2, F64, "Flat image:"); + CREATE_AND_SET_IMAGE(mask1,U8,0,3,3); + psFree(inReadout->mask); + inReadout->mask = mask1; + if ( !pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test C - Returned false should be true"); + return 3; + } + PRINT_MATRIX(flatImage2, F64, "Flat image out:"); + PRINT_MATRIX(inReadout->mask, PS_TYPE_MASK_DATA,"Resulting mask:"); + PRINT_MATRIX(inImage,F64,"Resulting image:"); + printFooter(stdout, "pmFlatField", "Test C - Mask flat image data starting with non-null mask", true); + printf("\n\n\n"); + + + // Test D - Attempt to use null flat readout + printNegativeTestHeader(stdout,"pmFlatField", "Test D - Attempt to use null flat readout", + "Null not allowed for flat readout", 0); + if( pmFlatField(inReadout, NULL) ) { + psError(PS_ERR_UNKNOWN,true,"Test D - Returned true should be false"); + return 4; + } + printFooter(stdout, "pmFlatField", "Test D - Attempt to use null flat readout", true); + printf("\n\n\n"); + + + // Test E - Attempt to use null input image + printNegativeTestHeader(stdout,"pmFlatField", "Test E - Attempt to use null input image", + "Null not allowed for input image", 0); + psImage *temp = inReadout->image; + inReadout->image = NULL; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test E - Returned true should be false" ); + return 5; + } + inReadout->image = temp ; + printFooter(stdout, "pmFlatField", "Test E - Attempt to use null input image", true); + printf("\n\n\n"); + + + // Test F - Attempt tp use null flat image + printNegativeTestHeader(stdout,"pmFlatField", "Test F - Attempt tp use null flat image", + "Null not allowed for flat image", 0); + temp = flatReadout->image; + flatReadout->image = NULL; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test F - Returned true should be false" ); + return 6; + } + flatReadout->image = temp; + printFooter(stdout, "pmFlatField", "Test F - Attempt tp use null flat image", true); + printf("\n\n\n"); + + + // Test G - Attempt to use input image bigger than flat image + printNegativeTestHeader(stdout,"pmFlatField", "Test G - Attempt to use input image bigger than flat image", + "Input image size exceeds that of flat image", 0); + CREATE_AND_SET_IMAGE(smallFlat,F64,0.0,2,2); + temp = flatReadout->image; + flatReadout->image = smallFlat; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test G - Returned true should be false"); + return 7; + } + flatReadout->image = temp; + printFooter(stdout, "pmFlatField", "Test G - Attempt to use input image bigger than flat image", true); + printf("\n\n\n"); + + // Test H - Attempt to use input image mask bigger than flat image + printNegativeTestHeader(stdout,"pmFlatField", "Test H - Attempt to use input image mask bigger than flat image", + "Input image mask size exceeds that of flat image", 0); + CREATE_AND_SET_IMAGE(largeMask,F64,0.0,5,5); + inReadout->mask = largeMask; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test H - Returned true should be false"); + return 8; + } + printFooter(stdout, "pmFlatField", "Test H - Attempt to use input image mask bigger than flat image", true); + printf("\n\n\n"); + inReadout->mask = mask1; + + // Test I - Attempt to use offset greater than input image + printNegativeTestHeader(stdout,"pmFlatField", "Test I - Attempt to use offset greater than input image", + "Total offset >= input image size", 0); + *(int*)&inReadout->col0 = 50; + *(int*)&inReadout->row0 = 50; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test I - Returned true should be false"); + return 9; + } + *(int*)&inReadout->col0 = 0; + *(int*)&inReadout->row0 = 0; + printFooter(stdout, "pmFlatField", "Test I - Attempt to use offset greater than input image", true); + printf("\n\n\n"); + + + // Test J - Attempt to use complex input image + printNegativeTestHeader(stdout,"pmFlatField", "Test J - Attempt to use complex input image", + "Complex types not allowed for input image", 0); + *(psElemType* ) & inReadout->image->type.type = PS_TYPE_C64; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test J - Returned true should be false"); + return 10; + } + *(psElemType* ) & inReadout->image->type.type = PS_TYPE_F64; + printFooter(stdout, "pmFlatField", "Test J - Attempt to use complex input image", true); + printf("\n\n\n"); + + + // Test K - Attempt to use complex flat image + printNegativeTestHeader(stdout,"pmFlatField", "Test K - Attempt to use complex flat image", + "Complex types not allowed for flat image", 0); + *(psElemType* ) & flatReadout->image->type.type = PS_TYPE_C64; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test K - Returned ture should be false"); + return 11; + } + *(psElemType* ) & flatReadout->image->type.type = PS_TYPE_F64; + printFooter(stdout, "pmFlatField", "Test K - Attempt to use complex flat image", true); + printf("\n\n\n"); + + + // Test L - Attempt to use non-equal input and flat image types + printNegativeTestHeader(stdout,"pmFlatField", "Test L - Attempt to use non-equal input and flat image types", + "Input and flat image types differ", 0); + *(psElemType* ) & flatReadout->image->type.type = PS_TYPE_F32; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test L - Returned true should be false"); + return 12; + } + *(psElemType* ) & flatReadout->image->type.type = PS_TYPE_F64; + printFooter(stdout, "pmFlatField", "Test L - Attempt to use non-equal input and flat image types", true); + printf("\n\n\n"); + + + // Test M - Attempt to use non-mask type mask image + printNegativeTestHeader(stdout,"pmFlatField", "Test M - Attempt to use non-mask type mask image", + "Mask must be PS_TYPE_MASK type", 0); + *(psElemType* ) & inReadout->mask->type.type = PS_TYPE_F32; + if ( pmFlatField(inReadout, flatReadout) ) { + psError(PS_ERR_UNKNOWN,true,"Test M - Returned true should be false"); + return 13; + } + *(psElemType* ) & inReadout->mask->type.type = PS_TYPE_MASK; + printFooter(stdout, "pmFlatField", "Test M - Attempt to use non-mask type mask image", true); + printf("\n\n\n"); + + + // Free memory + psFree(inReadout); + psFree(flatReadout); + //psFree(inImage); + psFree(flatImage1); + //psFree(flatImage1); + psFree(smallFlat); + psFree(largeMask); + + return 0; +} + Index: /branches/rel-1-1/psModules/test/detrend/tst_pmMaskBadPixels.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tst_pmMaskBadPixels.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tst_pmMaskBadPixels.c (revision 12167) @@ -0,0 +1,381 @@ +/** @file tst_pmMaskBadPixels.c + * + * @brief Contains the tests for pmMaskBadPixels: + * + * Test A - Create mask based on maskVal argument + * Test B - Create mask based on saturation argument + * Test C - Create mask based on growVal and grow arguments + * Test D - Auto Create mask based on maskVal argument + * Test E - Attempt to use null mask + * Test F - Attempt tp use null input image + * Test G - Attempt to use input image bigger than mask + * Test H - Attempt to use input image mask bigger than mask + * Test I - Attempt to use offset greater than input image + * Test J - Attempt to use complex input image + * Test K - Attempt to use non-mask type mask image + * + * @author Ross Harman, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2005-11-15 20:09:03 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + + +#include "psTest.h" +#include "pslib.h" +#include "pmMaskBadPixels.h" + + +#define PRINT_MATRIX(IMAGE,TYPE,STRING) \ +printf(STRING); \ +printf("\n"); \ +for(int i=(IMAGE)->numRows-1; i>-1; i--) { \ + for(int j=0; j<(IMAGE)->numCols; j++) { \ + if(PS_IS_PSELEMTYPE_COMPLEX((IMAGE)->type.type)) { \ + printf("%f+%fi ", creal((IMAGE)->data.TYPE[i][j]), cimag((IMAGE)->data.TYPE[i][j])); \ + } else if(PS_IS_PSELEMTYPE_INT((IMAGE)->type.type)) { \ + printf("%d", (int)(IMAGE)->data.TYPE[i][j]); \ + } else { \ + printf("%f", (double)(IMAGE)->data.TYPE[i][j]); \ + } \ + } \ + printf("\n"); \ +} \ +printf("\n"); + + +#define CREATE_AND_SET_IMAGE(NAME,TYPE,VALUE,NROWS,NCOLS) \ +(NAME) = (psImage*)psImageAlloc(NCOLS,NROWS,PS_TYPE_##TYPE); \ +for(int i=0; i<(NAME)->numRows; i++) { \ + for(int j=0; j<(NAME)->numCols; j++) { \ + (NAME)->data.TYPE[i][j] = VALUE; \ + } \ +} + +static int testMaskBadPixels1(void); +static int testMaskBadPixels2(void); +static int testMaskBadPixels3(void); +static int testMaskBadPixels4(void); +static int testMaskBadPixels5(void); +static int testMaskBadPixels6(void); +static int testMaskBadPixels7(void); +static int testMaskBadPixels8(void); +static int testMaskBadPixels9(void); +static int testMaskBadPixels10(void); +static int testMaskBadPixels11(void); + + +testDescription tests[] = { + {testMaskBadPixels1, 885, "pmMaskBadPixels - Create mask based on maskVal argument", 0, false}, + {testMaskBadPixels2, 885, "pmMaskBadPixels - Create mask based on saturation argument", 0, false}, + {testMaskBadPixels3, 885, "pmMaskBadPixels - Create mask based on growVal and grow arguments", 0, false}, + {testMaskBadPixels4, 885, "pmMaskBadPixels - Auto create mask based on maskVal argument", 0, false}, + {testMaskBadPixels5, 885, "pmMaskBadPixels - Attempt to use null mask", 0, false}, + {testMaskBadPixels6, 885, "pmMaskBadPixels - Attempt tp use null input image", 0, false}, + {testMaskBadPixels7, 885, "pmMaskBadPixels - Attempt to use input image bigger than mask", 0, false}, + {testMaskBadPixels8, 885, "pmMaskBadPixels - Attempt to use input image mask bigger than mask", 0, false}, + {testMaskBadPixels9, 885, "pmMaskBadPixels - Attempt to use offset greater than input image", 0, false}, + {testMaskBadPixels10, 885, "pmMaskBadPixels - Attempt to use complex input image", 0, false}, + {testMaskBadPixels11, 885, "pmMaskBadPixels - Attempt to use non-mask type mask image", 0, false }, + {NULL} + }; + +/* + #define PS_TYPE_MASK PS_TYPE_U8 + #define PS_TYPE_MASK_DATA U8 + #define PS_TYPE_MASK_NAME "psU8" +*/ + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + + +#define NUM_ROWS 50 +#define NUM_COLS 50 +#define DEFAULT_IMAGE_VAL 0.0 +#define DEFAULT_MASK_VAL 0 +#define MASK_VAL 1 +#define SAT_VAL 100.0 +#define GROW_VAL 1 +#define GROW_RAD 10 +int testMaskBadPixels1( void ) +{ + // + // Test A - Create mask based on maskVal argument + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + maskReadout->image->data.PS_TYPE_MASK_DATA[NUM_ROWS/2][NUM_COLS/2]=1; + maskReadout->image->row0 = 0; + maskReadout->image->col0 = 0; + + PRINT_MATRIX(maskReadout->image, U8, "Data mask:"); + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + PRINT_MATRIX(inReadout->mask, PS_TYPE_MASK_DATA, "Resulting mask:"); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels2( void ) +{ + // + // Test B - Create mask based on saturation argument + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + inReadout->image->data.F32[NUM_ROWS/2][NUM_COLS/2] = 150.0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + + //PS_IMAGE_PRINT_F32(inReadout->image); + PRINT_MATRIX(maskReadout->image, U8, "Data mask:"); + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + PRINT_MATRIX(inReadout->mask, U8, "Resulting mask:"); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels3( void ) +{ + // + // Test C - Create mask based on growVal and grow arguments + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + inReadout->image->data.F32[NUM_ROWS/2][NUM_COLS/2]=GROW_VAL; + inReadout->image->data.F32[NUM_ROWS/4][NUM_COLS/4]=GROW_VAL; + inReadout->image->data.F32[NUM_ROWS/4][NUM_COLS-(NUM_COLS/4)]=GROW_VAL; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS); + + PRINT_MATRIX(maskReadout->image, U8, "Data mask:"); + //PS_IMAGE_PRINT_F32(inReadout->image); + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + PRINT_MATRIX(inReadout->mask, U8, "Resulting mask:"); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels4( void ) +{ + // + // Test D - Auto Create mask based on maskVal argument + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + maskReadout->image->data.PS_TYPE_MASK_DATA[NUM_ROWS/2][NUM_COLS/2]=1; + + PRINT_MATRIX(maskReadout->image, U8, "Data mask:"); + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + PRINT_MATRIX(inReadout->mask, U8, "Resulting mask:"); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels5( void ) +{ + // + // Test E - Attempt to use null mask + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmMaskBadPixels(inReadout, NULL, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + psFree(inReadout); + + return 0; +} + +int testMaskBadPixels6( void ) +{ + // + // Test F - Attempt tp use null input image + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels7( void ) +{ + // + // Test G - Attempt to use input image bigger than mask + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS+10, NUM_COLS+10); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels8( void ) +{ + // + // Test H - Attempt to use mask bigger than image + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS+10, NUM_COLS+10) + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels9( void ) +{ + // + // Test I - Attempt to use offset greater than input image + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + *(int*)&inReadout->image->col0 = 150; + *(int*)&inReadout->image->row0 = 150; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels10( void ) +{ + // + // Test J - Attempt to use complex input image + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, C64, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, U8, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + +int testMaskBadPixels11( void ) +{ + // + // Test K - Attempt to use mask image with wrong data type. + // + + pmReadout *inReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(inReadout->image, F32, DEFAULT_IMAGE_VAL, NUM_ROWS, NUM_COLS); + inReadout->image->row0 = 0; + inReadout->image->col0 = 0; + inReadout->row0 = 0; + inReadout->col0 = 0; + + pmReadout *maskReadout = pmReadoutAlloc(NULL); + CREATE_AND_SET_IMAGE(maskReadout->image, F64, DEFAULT_MASK_VAL, NUM_ROWS, NUM_COLS) + + pmMaskBadPixels(inReadout, maskReadout, MASK_VAL, SAT_VAL, GROW_VAL, GROW_RAD); + + psFree(inReadout); + psFree(maskReadout); + + return 0; +} + Index: /branches/rel-1-1/psModules/test/detrend/tst_pmNonLinear.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tst_pmNonLinear.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tst_pmNonLinear.c (revision 12167) @@ -0,0 +1,268 @@ +/* @file tst_pmNonLinear.c + * + * @brief Contains the tests for pmNonLinear.c: + * + * test00: This code will create a simple polynomial, and call + * pmNonLinearityPolynomial() for a variety of image sizes [(1, 1), (1, + * N), (N, 1), (N, N)]. + * + * test01: This code will create simple table lookup vectors, and call + * pmNonLinearityPolynomial() for a variety of image sizes [(1, 1), (1, + * N), (N, 1), (N, N)]. + * + * test02, test03: This code tests the functions with various unallowable + * input parameters (NULLS) and incorrect vector sizes. + * + * @author GLG, MHPCC + * + * XXX: Add tests in which the lookup file has incorrect number of entries, + * and where the data is outside the pmReadout range. + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-01-26 21:10:51 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#include "psTest.h" +#include "pslib.h" +#include "pmNonLinear.h" +static int test00(void); +static int test01(void); +static int test02(void); +static int test03(void); +testDescription tests[] = { + {test00, 000, "pmNonLinearityPolynomial", true, false}, + {test01, 000, "pmNonLinearityLookup", true, false}, + {test02, 000, "pmNonLinearityPolynomial(): error/warning conditions", true, false}, + {test03, 000, "pmNonLinearityLookup(): error/warning conditions", true, false}, + {NULL} + }; + +#define NUM_ROWS 8 +#define NUM_COLS 8 +#define LOOKUP_FILENAME ".tmp_tst_pmNonLinearLookupFile" +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + // + // We generate a lookup file for future tests. We should probably remove + // it when we're done. + // + FILE *fp = fopen(LOOKUP_FILENAME, "w"); + ; + for (psS32 i=0;iimage = myImage; + psPolynomial1D *myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + myPoly->coeff[1] = 1.0; + + printPositiveTestHeader(stdout, "pmNonLinear", "doNonLinearityPolynomialTest"); + + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + } + } + + myReadout = pmNonLinearityPolynomial(myReadout, myPoly); + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = false; + } + } + } + + + psFree(myReadout); + psFree(myPoly); + printFooter(stdout, "pmNonLinear", "doNonLinearityPolynomialTest", true); + return(testStatus); +} + +int test00( void ) +{ + int testStatus = 0; + + testStatus |= doNonLinearityPolynomialTest(1, 1); + testStatus |= doNonLinearityPolynomialTest(NUM_COLS, 1); + testStatus |= doNonLinearityPolynomialTest(1, NUM_ROWS); + testStatus |= doNonLinearityPolynomialTest(NUM_COLS, NUM_ROWS); + + return(testStatus); +} + +int doNonLinearityLookupTest(int numCols, int numRows) +{ + int i; + int j; + float actual; + float expect; + int testStatus = true; + psImage *myImage = psImageAlloc(numCols, numRows, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + myReadout->image = myImage; + + printPositiveTestHeader(stdout, "pmNonLinear", "doNonLinearityLookupTest"); + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + } + } + + myReadout = pmNonLinearityLookup(myReadout, LOOKUP_FILENAME); + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = false; + } + } + } + + psFree(myReadout); + printFooter(stdout, "pmNonLinear", "doNonLinearityLookupTest", true); + return(testStatus); +} + +int test01( void ) +{ + int testStatus = 0; + + testStatus |= doNonLinearityLookupTest(1, 1); + testStatus |= doNonLinearityLookupTest(NUM_COLS, 1); + testStatus |= doNonLinearityLookupTest(1, NUM_ROWS); + testStatus |= doNonLinearityLookupTest (NUM_COLS, NUM_ROWS); + + return(testStatus); +} + +int test02( void ) +{ + int i; + int j; + int testStatus = true; + psImage *myImage = psImageAlloc(NUM_COLS, NUM_ROWS, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + pmReadout *rc = NULL; + myReadout->image = myImage; + psPolynomial1D *myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, 2); + myPoly->coeff[1] = 1.0; + + printPositiveTestHeader(stdout, "pmNonLinear", "Testing bad input parameter conditions."); + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + } + } + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityPolynomial() with NULL input readout. Should generate error, return NULL.\n"); + rc = pmNonLinearityPolynomial(NULL, myPoly); + if (rc != NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a non-NULL pmReadout\n"); + testStatus = false; + } + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityPolynomial() with NULL input readout->image. Should generate error, return NULL.\n"); + psImage *tmpImage = myReadout->image; + myReadout->image = NULL; + rc = pmNonLinearityPolynomial(myReadout, myPoly); + if (rc != NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a non-NULL pmReadout\n"); + testStatus = false; + } + myReadout->image = tmpImage; + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityPolynomial() with NULL polynomial. Should generate error, return NULL.\n"); + rc = pmNonLinearityPolynomial(myReadout, NULL); + if (rc != NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a non-NULL pmReadout\n"); + testStatus = false; + } + + psFree(myReadout); + psFree(myPoly); + return(testStatus); +} + + +int test03Init(pmReadout *myReadout) +{ + for (psS32 i=0;iimage->data.F32[i][j] = (float) (i + j); + } + } + return(0); +} + +int test03() +{ + int testStatus = true; + psImage *myImage = psImageAlloc(NUM_COLS, NUM_ROWS, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + pmReadout *rc = NULL; + myReadout->image = myImage; + + test03Init(myReadout); + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityLookup() with NULL input pmReadout. Should generate error, return NULL.\n"); + rc = pmNonLinearityLookup(NULL, LOOKUP_FILENAME); + if (rc != NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a non-NULL pmReadout\n"); + testStatus = false; + } + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityLookup() with NULL input pmReadout->image. Should generate error, return NULL.\n"); + psImage *tmpImage = myReadout->image; + myReadout->image = NULL; + rc = pmNonLinearityLookup(myReadout, LOOKUP_FILENAME); + if (rc != NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a non-NULL pmReadout\n"); + testStatus = false; + } + myReadout->image = tmpImage; + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityLookup() with non-existent lookup file.\n"); + rc = pmNonLinearityLookup(myReadout, "I_DONT_EXIST"); + if (rc == NULL) { + printf("TEST ERROR: pmNonLinearityPolynomial() returned a NULL pmReadout\n"); + testStatus = false; + } + + + printf("------------------------------------------------------------\n"); + printf("Calling pmNonLinearityLookup() with one pixels outside inFlux range. Should generate warnings.\n"); + + psFree(myReadout); + + printFooter(stdout, "pmNonLinear", "Testing bad input parameter conditions.", true); + return(testStatus); +} Index: /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractBias.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractBias.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractBias.c (revision 12167) @@ -0,0 +1,1129 @@ +/** @file tst_pmSubtractBias.c + * + * @brief Contains the tests for pmSubtractBias.c: + * + * test00a: This code will subtract full bias frames from the input image. + * XXX: Must test: + * Various image offsets. + * Various image size combinations. + * Various data types for the bias and input images. + * Ensure code works when CELL.TRIMSEC is not set. + * test00b: This code will subtract full dark frames from the input image. + * XXX: Must test: + * Various image offsets. + * Various image size combinations. + * Various data types for the bias and input images. + * Code properly determines CELL.DARKTIME from cell metadata. + * Ensure code works when CELL.DARKTIME is not set. + * Ensure code works when CELL.TRIMSEC is not set. + * test03: Calculate a row overscan vector and subtract it from each + * row in the input image. + * test05: + * + * @author GLG, MHPCC + * + * XXX: Memory leaks are not being detected. + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-25 22:02:23 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ + +#include "psTest.h" +#include "pslib.h" +#include "pmSubtractBias.h" +static int test00a(void); +static int test00b(void); +//static int test01(void); +//static int test02(void); +//static int test03(void); +//static int test04(void); +static int test05(void); +testDescription tests[] = { + {test00a, 000, "doSubtractBiasFullFrame", 0, true}, + {test00b, 000, "doSubtractDarkFullFrame", 0, true}, + // {test01, 000, "pmSubtractBias", 0, true}, + // {test02, 000, "pmSubtractBias", 0, true}, + // {test03, 000, "pmSubtractBias", 0, true}, + // {test04, 000, "pmSubtractBias", 0, true}, + {test05, 000, "pmSubtractBias", 0, false}, + {NULL} + }; + +psS32 currentId = 0; +psS32 memLeaks = 0; // XXX: remove + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + + psTraceSetLevel(".", 0); + psTraceSetLevel("spline1DFree", 0); + psTraceSetLevel("calculateSecondDerivs", 0); + psTraceSetLevel("vectorBinDisectF32", 0); + psTraceSetLevel("vectorBinDisectF64", 0); + psTraceSetLevel("p_psVectorBinDisect", 0); + psTraceSetLevel("psSpline1DAlloc", 0); + psTraceSetLevel("psVectorFitSpline1D", 0); + psTraceSetLevel("psSpline1DEval", 0); + psTraceSetLevel("psSpline1DEvalVector", 0); + + psS32 currentId = psMemGetId(); // XXX: remove + psS32 memLeaks = 0; // XXX: remove + if (0) { + PRINT_MEMLEAKS(0); + } + + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + +#define NUM_ROWS 8 +#define NUM_COLS 8 +#define MAX_HEADER_MSG_LENGTH 1000 +#define POLYNOMIAL_FIT_ORDER 2 +#define NUM_OVERSCANS 2 +/****************************************************************************** +doSubtractBiasFullFrame(): a sample pmReadout as well as a bias image are +created and the bias image is subtracted from the pmReadout. + *****************************************************************************/ +int doSubtractBiasFullFrame(int numCols, int numRows) +{ + int i; + int j; + float actual; + float expect; + int testStatus = 0; + psImage *tmpImage1 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage2 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + pmReadout *myBias = pmReadoutAlloc(NULL); + myReadout->image = tmpImage1; + myBias->image = tmpImage2; + + char *HeaderMessageStr = (char *) psAlloc(MAX_HEADER_MSG_LENGTH); + sprintf(HeaderMessageStr, "doSubtractBiasFullFrame(%d, %d)", numRows, numCols); + printPositiveTestHeader(stdout, "pmSubtractBias", HeaderMessageStr); + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + myBias->image->data.F32[i][j] = 1.0; + } + } + + myReadout = pmSubtractBias(myReadout, NULL, PM_FIT_NONE, false, + NULL, 0, myBias, NULL); + + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + + + psFree(myReadout); + psFree(myBias); + printFooter(stdout, "pmSubtractBias", HeaderMessageStr, true); + psFree(HeaderMessageStr); + return(testStatus); +} + + +int test00a( void ) +{ + int testStatus = 0; + + testStatus |= doSubtractBiasFullFrame(1, 1); + testStatus |= doSubtractBiasFullFrame(NUM_COLS, 1); + testStatus |= doSubtractBiasFullFrame(1, NUM_ROWS); + testStatus |= doSubtractBiasFullFrame(NUM_COLS, NUM_ROWS); + return(testStatus); +} + + +/****************************************************************************** +doSubtractDarkFullFrame(): a sample pmReadout as well as a dark image are +created and the dark image is subtracted from the pmReadout. + *****************************************************************************/ +int doSubtractDarkFullFrame(int numCols, int numRows) +{ + int i; + int j; + float actual; + float expect; + int testStatus = 0; + psImage *tmpImage1 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage2 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + pmReadout *myDark = pmReadoutAlloc(NULL); + myReadout->image = tmpImage1; + myDark->image = tmpImage2; + + char *HeaderMessageStr = (char *) psAlloc(MAX_HEADER_MSG_LENGTH); + sprintf(HeaderMessageStr, "doSubtractDarkFullFrame(%d, %d)", numRows, numCols); + printPositiveTestHeader(stdout, "pmSubtractBias", HeaderMessageStr); + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + myDark->image->data.F32[i][j] = 1.0; + } + } + + myReadout = pmSubtractBias(myReadout, NULL, PM_FIT_NONE, false, + NULL, 0, NULL, myDark); + + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + + + psFree(myReadout); + psFree(myDark); + printFooter(stdout, "pmSubtractBias", HeaderMessageStr, true); + psFree(HeaderMessageStr); + return(testStatus); +} + + +int test00b( void ) +{ + int testStatus = 0; + + testStatus |= doSubtractDarkFullFrame(1, 1); + testStatus |= doSubtractDarkFullFrame(NUM_COLS, 1); + testStatus |= doSubtractDarkFullFrame(1, NUM_ROWS); + testStatus |= doSubtractDarkFullFrame(NUM_COLS, NUM_ROWS); + return(testStatus); +} + + +/* +int doSubtractOverscansTestInputCases(int numCols, int numRows) +{ + int i; + int j; + int testStatus = 0; + psImage *tmpImage1 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage2 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage3 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage4 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *tmpImage2Short = psImageAlloc(numCols-1, numRows-1, PS_TYPE_F32); + psImage *tmpImage3Short = psImageAlloc(numCols-1, numRows-1, PS_TYPE_F32); + psImage *tmpImage4Short = psImageAlloc(numCols-1, numRows-1, PS_TYPE_F32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + myReadout->image = tmpImage1; + pmReadout *rc = NULL; + psList *list; + psList *listShort; + psStats *stat = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psImage *tmpImage5 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + pmReadout *myBias = pmReadoutAlloc(NULL); + myBias->image = tmpImage5; + printPositiveTestHeader(stdout, "pmSubtractBias", "Testing input parameter error conditions"); + + psImage *tmpImage5ShortRows = psImageAlloc(numCols, numRows-1, PS_TYPE_F32); + pmReadout *myBiasShortRows = pmReadoutAlloc(NULL); + myBiasShortRows->image = tmpImage5ShortRows; + psImage *tmpImage5ShortCols = psImageAlloc(numCols-1, numRows, PS_TYPE_F32); + pmReadout *myBiasShortCols = pmReadoutAlloc(NULL); + myBiasShortCols->image = tmpImage5ShortCols; + + for (i=0;iimage->data.F32[i][j] = (float) (i + j); + tmpImage2->data.F32[i][j] = 3.0; + tmpImage3->data.F32[i][j] = 4.0; + tmpImage4->data.F32[i][j] = 5.0; + myBias->image->data.F32[i][j] = 1.0; + } + } + list = psListAlloc(tmpImage2); + psListAdd(list, PS_LIST_HEAD, tmpImage3); + psListAdd(list, PS_LIST_HEAD, tmpImage4); + + for (i=0;idata.F32[i][j] = 3.0; + tmpImage3Short->data.F32[i][j] = 4.0; + tmpImage4Short->data.F32[i][j] = 5.0; + } + } + listShort = psListAlloc(tmpImage2Short); + psListAdd(listShort, PS_LIST_HEAD, tmpImage3Short); + psListAdd(listShort, PS_LIST_HEAD, tmpImage4Short); + for (i=0;iimage->data.F32[i][j] = 1.0; + } + } + for (i=0;iimage->data.F32[i][j] = 1.0; + } + } + + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with NULL overscan list and PM_OVERSCAN_ALL. Should generate error.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_ALL, stat, 0, PM_FIT_NONE, NULL); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with NULL overscan list and PM_OVERSCAN_ROWS. Should generate error.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_ROWS, stat, 0, PM_FIT_NONE, NULL); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with NULL overscan list and PM_OVERSCAN_COLUMNS. Should generate error.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_COLUMNS, stat, 0, PM_FIT_NONE, NULL); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with non-NULL overscan list and PM_OVERSCAN_NONE. Should generate warning.\n"); + rc = pmSubtractBias(myReadout, NULL, list, PM_OVERSCAN_NONE, stat, 0, PM_FIT_NONE, myBias); + + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + + // Restore myReadout for next test. + myReadout->image->data.F32[i][j] = (float) (i + j); + } + } + + // XXX: This does not seem to be a requirement. + if (0) { + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with NULL overscan list and PM_OVERSCAN_NONE. Should generate warning.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_NONE, stat, + 0, PM_FIT_NONE, myBias); + + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + + // Restore myReadout for next test. + myReadout->image->data.F32[i][j] = (float) (i + j); + } + } + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with PM_OVERSCAN_NONE and PM_FIT_POLYNOMIAL. Should generate Warning.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_NONE, stat, 0, PM_FIT_POLYNOMIAL, myBias); + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + + // Restore myReadout for next test. + myReadout->image->data.F32[i][j] = (float) (i + j); + } + } + + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with PM_OVERSCAN_ALL and PM_FIT_SPLINE. Should generate Warning.\n"); + rc = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_NONE, stat, 0, PM_FIT_SPLINE, myBias); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + + // Restore myReadout for next test. + myReadout->image->data.F32[i][j] = (float) (i + j); + } + } + + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with multiple stats->options. Should generate Warning.\n"); + stat->options|= PS_STAT_SAMPLE_MEDIAN; + myReadout = pmSubtractBias(myReadout, NULL, list, PM_OVERSCAN_ALL, stat, + 0, PM_FIT_NONE, NULL); + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + stat->options = PS_STAT_SAMPLE_MEAN; + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() undersize overscans (PM_OVERSCAN_ROWS). Should generate Warning.\n"); + rc = pmSubtractBias(myReadout, NULL, listShort, PM_OVERSCAN_ROWS, stat, + 0, PM_FIT_NONE, NULL); + if (0) { + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() undersize overscans (PM_OVERSCAN_COLUMNS). Should generate Warning.\n"); + rc = pmSubtractBias(myReadout, NULL, listShort, PM_OVERSCAN_COLUMNS, stat, + 0, PM_FIT_NONE, NULL); + if (0) { + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() undersize bias image (short rows). Should generate Error.\n"); + myReadout = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_NONE, NULL, + 0, PM_FIT_NONE, myBiasShortRows); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() undersize bias image (short columns). Should generate Error.\n"); + myReadout = pmSubtractBias(myReadout, NULL, NULL, PM_OVERSCAN_NONE, NULL, + 0, PM_FIT_NONE, myBiasShortCols); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with bogus PM_FIT. Should generate Error.\n"); + myReadout = pmSubtractBias(myReadout, NULL, list, PM_OVERSCAN_ROWS, stat, + 0, 54321, NULL); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + printf("------------------------------------------------------------------\n"); + printf("Calling pmSubtractBias() with bogus overScanAxis. Should generate Error.\n"); + myReadout = pmSubtractBias(myReadout, NULL, list, 54321, stat, + 0, PM_FIT_NONE, NULL); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractBias() did not return input pmReadout.\n"); + testStatus = false; + psFree(rc); + } + + if (0) { + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } + } + } + } + + printf("------------------------------------------------------------------\n"); + psFree(myReadout); + psFree(tmpImage2); + psFree(tmpImage3); + psFree(tmpImage4); + psFree(tmpImage2Short); + psFree(tmpImage3Short); + psFree(tmpImage4Short); + psFree(myBias); + psFree(myBiasShortRows); + psFree(myBiasShortCols); + psFree(stat); + psFree(list); + psFree(listShort); + + printFooter(stdout, "pmSubtractBias", "Testing input parameter error conditions", true); + return(testStatus); +} + +int test04( void ) +{ + int testStatus = 0; + + testStatus |= doSubtractOverscansTestInputCases(NUM_COLS, NUM_ROWS); + return(testStatus); +} +*/ + +void PS_POLY1D_PRINT( + psPolynomial1D *poly) +{ + printf("-------------- PS_POLY1D_PRINT() --------------\n"); + printf("poly->nX is %d\n", poly->nX); + for (psS32 i = 0 ; i < (1 + poly->nX) ; i++) { + printf("poly->coeff[%d] is %f\n", i, poly->coeff[i]); + } +} + +void PS_PRINT_SPLINE2(psSpline1D *mySpline) +{ + printf("-------------- PS_PRINT_SPLINE2() --------------\n"); + if (mySpline != NULL) { + printf("mySpline->n is %d\n", mySpline->n); + for (psS32 i = 0 ; i < mySpline->n ; i++) { + if (mySpline->spline[i] != NULL) { + PS_POLY1D_PRINT(mySpline->spline[i]); + } + } + if (mySpline->knots != NULL) { + PS_VECTOR_PRINT_F32(mySpline->knots); + } + } else { + printf("NULL\n"); + } + printf("-------------- PS_PRINT_SPLINE2() DONE --------------\n"); +} + + + + + + +/****************************************************************************** +doSubtractOverscansGeneric(): This is a general version of the +bias subtraction tests which allows the various parameters to be specified +as arguments. + *****************************************************************************/ +int doSubtractOverscansGeneric( + int imageNumCols, + int imageNumRows, + int overscanNumCols, + int overscanNumRows, + int numOverscans, + pmOverscanAxis overscanaxis, + pmFit fit, + psS32 nBin) +{ + int i; + int j; + float actual; + float expect; + int testStatus = 0; + + printPositiveTestHeader(stdout, "pmSubtractBias", "PUT COMMENT HERE"); + printf("---- doSubtractOverscansGeneric() ----\n"); + printf(" Image size: %d by %d\n", imageNumRows, imageNumCols); + printf(" Overscan size: %d by %d\n", overscanNumRows, overscanNumCols); + printf(" Total Overscans: %d\n", numOverscans); + printf(" Binning factor: %d\n", nBin); + if (overscanaxis == PM_OVERSCAN_ROWS) + printf(" Overscan axis: PM_OVERSCAN_ROWS\n"); + if (overscanaxis == PM_OVERSCAN_COLUMNS) + printf(" Overscan axis: PM_OVERSCAN_COLUMNS\n"); + if (overscanaxis == PM_OVERSCAN_ALL) + printf(" Overscan axis: PM_OVERSCAN_ALL\n"); + if (overscanaxis == PM_OVERSCAN_NONE) + printf(" Overscan axis: PM_OVERSCAN_NONE\n"); + if (fit == PM_FIT_NONE) + printf(" Fit type: PM_FIT_NONE\n"); + if (fit == PM_FIT_POLYNOMIAL) + printf(" Fit type: PM_FIT_POLYNOMIAL\n"); + if (fit == PM_FIT_SPLINE) + printf(" Fit type: PM_FIT_SPLINE\n"); + + // + // Create and initialize input image, FPA hierarchy. + // + const psMetadata *camera = psMetadataAlloc(); + pmFPA* fpa = pmFPAAlloc(camera); + + if (fpa == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmFPAAlloc returned a NULL.\n"); + return 1; + } + + pmChip *chip = pmChipAlloc(fpa, "ChipName"); + if (chip == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmChipAlloc returned a NULL.\n"); + return 2; + } + + pmCell *cell = pmCellAlloc(chip, (psMetadata *) camera, "CellName"); + if (cell == NULL) { + psLogMsg(__func__,PS_LOG_ERROR, "TEST ERROR: pmCellAlloc returned a NULL.\n"); + return 3; + } + + pmReadout *myReadout = pmReadoutAlloc(cell); + myReadout->image = psImageAlloc(imageNumCols, imageNumRows, PS_TYPE_F32); + for (i=0;iimage->numRows;i++) { + for (j=0;jimage->numCols;j++) { + myReadout->image->data.F32[i][j] = (float) (i + j); + } + } + + // + // Set overscan axis in the metadata. + // + psBool rc = false; + if (overscanaxis == PM_OVERSCAN_ROWS) { + rc = psMetadataAddS32(myReadout->parent->concepts, PS_LIST_HEAD, "CELL.READDIR", 0, NULL, 1); + } else if (overscanaxis == PM_OVERSCAN_COLUMNS) { + rc = psMetadataAddS32(myReadout->parent->concepts, PS_LIST_HEAD, "CELL.READDIR", 0, NULL, 2); + } else if (overscanaxis == PM_OVERSCAN_ALL) { + rc = psMetadataAddS32(myReadout->parent->concepts, PS_LIST_HEAD, "CELL.READDIR", 0, NULL, 3); + } else if (overscanaxis == PM_OVERSCAN_NONE) { + rc = psMetadataAddS32(myReadout->parent->concepts, PS_LIST_HEAD, "CELL.READDIR", 0, NULL, 0); + } + if (rc == false) { + printf("TEST ERROR: Could not set CELL.READDIR metadata.\n"); + testStatus = 1; + } + + psStats *stat = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psPolynomial1D *myPoly = psPolynomial1DAlloc(PS_POLYNOMIAL_ORD, POLYNOMIAL_FIT_ORDER); + psSpline1D *mySpline = NULL; + + + if (0) { + if (overscanNumRows <= 0) { + overscanNumRows = 1; + } + if (overscanNumCols <= 0) { + overscanNumCols = 1; + } + } + psF32 oAverage = 0.0; + myReadout->bias = NULL; + for (psS32 i = 0 ; i < numOverscans ; i++) { + psImage *tmpImage = psImageAlloc(overscanNumCols, overscanNumRows, PS_TYPE_F32); + psF32 oValue = (float) (i + 3); + PS_IMAGE_SET_F32(tmpImage, oValue); + oAverage += oValue; + if (myReadout->bias == NULL) { + myReadout->bias = psListAlloc(tmpImage); + } else { + psListAdd(myReadout->bias, PS_LIST_HEAD, tmpImage); + } + } + oAverage/= (psF32) numOverscans; + if (0) { + if (fit == PM_FIT_NONE) { + myReadout = pmSubtractBias(myReadout, NULL, PM_FIT_NONE, overscanaxis, + stat, nBin, NULL, NULL); + } else if (fit == PM_FIT_POLYNOMIAL) { + myReadout = pmSubtractBias(myReadout, myPoly, PM_FIT_POLYNOMIAL, overscanaxis, + stat, nBin, NULL, NULL); + } else if (fit == PM_FIT_SPLINE) { + // mySpline = psSpline1DAlloc(); + myReadout = pmSubtractBias(myReadout, mySpline, PM_FIT_SPLINE, overscanaxis, + stat, nBin, NULL, NULL); + } + if (myReadout == NULL ) { + printf("TEST ERROR: pmSubtractBias() returned NULL.\n"); + testStatus = 1; + } else { + for (i=0;iimage->data.F32[i][j]; + if (FLT_EPSILON < fabs(expect - actual)) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + testStatus = 1; + } else { + //printf("GOOD: image[%d][%d] is %f, should be %f\n", i, j, actual, expect); + } + } + } + } + } + + // HEY + psFree(fpa); + psFree(stat); + psFree(myPoly); + psFree(mySpline); + + printFooter(stdout, "pmSubtractBias", "Column Overscans", true); + return(testStatus); +} + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +/****************************************************************************** +test05a() The following combinations are tested here: + Overscan images are same size, no fit, bin factor is 1. + Overscan images are same size, no fit, bin factor is 2. + *****************************************************************************/ +int test05a( + psS32 imageNumCols, + psS32 imageNumRows, + psS32 overscanNumCols, + psS32 overscanNumRows) +{ + int testStatus = 0; + + // imageNumCols, imageNumRows, overscanNumCols, overscanNumRows, + // overscanaxis, fit, nBin + + // + // Overscan images are same size, no fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_NONE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_NONE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_NONE, 1); + + // + // Overscan images are same size, no fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_NONE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_NONE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_NONE, 2); + + return(testStatus); +} + + +/****************************************************************************** +test05b() The following combinations are tested here: + Overscan images are too small, spline fit, bin factor is 1. + Overscan images are too small, spline fit, bin factor is 2. + Overscan images are same size, spline fit, bin factor is 1. + Overscan images are same size, spline fit, bin factor is 2. + Overscan images are too big, spline fit, bin factor is 1. + Overscan images are too big, spline fit, bin factor is 2. + A single overscan image of the same size, spline fit, bin factor is 1. + + Overscan images are too small, polynomial fit, bin factor is 1. + Overscan images are too small, polynomial fit, bin factor is 2. + Overscan images are same size, polynomial fit, bin factor is 1. + Overscan images are same size, polynomial fit, bin factor is 2. + Overscan images are too big, polynomial fit, bin factor is 1. + Overscan images are too big, polynomial fit, bin factor is 2. + A single overscan image of the same size, polynomial fit, bin factor is 1. + +XXX: Must add M-by-N image size tests. + *****************************************************************************/ +int test05b( + psS32 imageNumCols, + psS32 imageNumRows, + psS32 overscanNumCols, + psS32 overscanNumRows) +{ + int testStatus = 0; + + // + // Overscan images are too small, spline fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 1); + + // + // Overscan images are too small, spline fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 2); + + + // + // Overscan images are same size, spline fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 1); + + // + // Overscan images are same size, spline fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 2); + + // + // Overscan images are too big, spline fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 1); + + // + // Overscan images are too big, spline fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2 , NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 2); + + + // + // A single overscan image of the same size, spline fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_ALL, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_COLUMNS, + PM_FIT_SPLINE, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_ROWS, + PM_FIT_SPLINE, 1); + + + // + // Overscan images are too small, polynomial fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 1); + + // + // Overscan images are too small, polynomial fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols-2, overscanNumRows-2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 2); + + + // + // Overscan images are same size, polynomial fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 1); + + // + // Overscan images are same size, polynomial fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 2); + + // + // Overscan images are too big, polynomial fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 1); + + // + // Overscan images are too big, polynomial fit, bin factor is 2. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 2); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols+2, overscanNumRows+2, NUM_OVERSCANS, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 2); + + // + // A single overscan image of the same size, polynomial fit, bin factor is 1. + // + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_ALL, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_COLUMNS, + PM_FIT_POLYNOMIAL, 1); + + testStatus |= doSubtractOverscansGeneric(imageNumCols, imageNumRows, + overscanNumCols, overscanNumRows, 1, + PM_OVERSCAN_ROWS, + PM_FIT_POLYNOMIAL, 1); + + return(testStatus); +} + + + +#define LOW_COLS 3 +#define LOW_ROWS 3 + +/****************************************************************************** +test05(): See test05a() and test05b(). + +We run the tests in test05b() starting with all possible combinations of +sizes. + +XXX: Must add M-by-N image size tests. + *****************************************************************************/ +int test05() +{ + int testStatus = 0; + // testStatus = test05a(NUM_COLS, NUM_ROWS, NUM_COLS, NUM_ROWS); + + // testStatus|= test05b(LOW_COLS, LOW_ROWS, LOW_COLS, LOW_ROWS); + // testStatus|= test05b(LOW_COLS, LOW_ROWS, LOW_COLS, NUM_ROWS); + // testStatus|= test05b(LOW_COLS, LOW_ROWS, NUM_COLS, LOW_ROWS); + // testStatus|= test05b(LOW_COLS, LOW_ROWS, NUM_COLS, NUM_ROWS); + + // testStatus|= test05b(LOW_COLS, NUM_ROWS, LOW_COLS, LOW_ROWS); + // testStatus|= test05b(LOW_COLS, NUM_ROWS, LOW_COLS, NUM_ROWS); + // testStatus|= test05b(LOW_COLS, NUM_ROWS, NUM_COLS, LOW_ROWS); + // testStatus|= test05b(LOW_COLS, NUM_ROWS, NUM_COLS, NUM_ROWS); + + // testStatus|= test05b(NUM_COLS, LOW_ROWS, LOW_COLS, LOW_ROWS); + // testStatus|= test05b(NUM_COLS, LOW_ROWS, LOW_COLS, NUM_ROWS); + // testStatus|= test05b(NUM_COLS, LOW_ROWS, NUM_COLS, LOW_ROWS); + // testStatus|= test05b(NUM_COLS, LOW_ROWS, NUM_COLS, NUM_ROWS); + + // testStatus|= test05b(NUM_COLS, NUM_ROWS, LOW_COLS, LOW_ROWS); + // testStatus|= test05b(NUM_COLS, NUM_ROWS, LOW_COLS, NUM_ROWS); + // testStatus|= test05b(NUM_COLS, NUM_ROWS, NUM_COLS, LOW_ROWS); + testStatus|= test05b(NUM_COLS, NUM_ROWS, NUM_COLS, NUM_ROWS); + + + return(testStatus); +} + Index: /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractSky.c =================================================================== --- /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractSky.c (revision 12167) +++ /branches/rel-1-1/psModules/test/detrend/tst_pmSubtractSky.c (revision 12167) @@ -0,0 +1,375 @@ +/** @file tst_pmSubtractSky.c + * + * @brief Contains the tests for pmSubtractSky.c: + * + * test00: This code will test the pmSubtractSky routine. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-25 22:02:23 $ + * + * XXX: I added the CELL.TRIMSEC region code but there are not tests for it. + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ +#include "psTest.h" +#include "pslib.h" +#include "pmSubtractSky.h" +#define NUM_ROWS 512 +#define NUM_COLS 512 +#define POLY_X_ORDER 3 +#define POLY_Y_ORDER 3 +#define ERROR_TOLERANCE 1.0 +#define OBJECT_INTENSITY 2000.0 +static int test00(void); +static int test01(void); +testDescription tests[] = { + {test00, 000, "pmSubtractSky", 0, false}, + {test01, 000, "pmSubtractSky: warning, error messages", 0, false}, + {NULL} + }; + +float func(int i, int j) +{ + return((float) (i + j)); +} + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); + // test00(); +} + +/****************************************************************************** + *****************************************************************************/ +int doSubtractSkySimple(int numCols, int numRows, int binFactor) +{ + int i; + int j; + int testStatus = 0; + psImage *tmpImageF32 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + // pmReadout *myReadout = pmReadoutAlloc(numCols, numRows, tmpImageF32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + myReadout->image = tmpImageF32; + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psPolynomial2D *myPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, POLY_X_ORDER, POLY_Y_ORDER); + + printPositiveTestHeader(stdout, "pmSubtractSky", "doSubtractSkySimple"); + for (i=0;iimage->data.F32[i][j] = func(i, j); + } + } + + myReadout = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, + binFactor, myStats, 10.0); + if (myReadout == NULL) { + printf("TEST ERROR: pmSubtractSky() returned NULL.\n"); + testStatus = 1; + } else { + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, myReadout->image->data.F32[i][j]); + testStatus = 1; + } + } + } + } + psFree(myReadout); + psFree(myStats); + psFree(myPoly); + printFooter(stdout, "pmSubtractSky", "doSubtractSkySimple", true); + return(testStatus); +} + +/****************************************************************************** + *****************************************************************************/ +int doSubtractSkyWithObjects(int numCols, int numRows, int binFactor) +{ + int i; + int j; + int testStatus = 0; + psImage *tmpImageF32 = psImageAlloc(numCols, numRows, PS_TYPE_F32); + // pmReadout *myReadout = pmReadoutAlloc(numCols, numRows, tmpImageF32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + myReadout->image = tmpImageF32; + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psPolynomial2D *myPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, POLY_X_ORDER, POLY_Y_ORDER); + psImage *trueImage = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psF32 errorTolerance = ERROR_TOLERANCE * ((psF32) binFactor); + + printPositiveTestHeader(stdout, "pmSubtractSky", "doSubtractSkyWithObjects"); + for (i=0;iimage->data.F32[i][j] = func(i, j); + } + } + // We insert a few bright spots in the image. + myReadout->image->data.F32[NUM_ROWS/4][NUM_COLS/4]+= OBJECT_INTENSITY; + myReadout->image->data.F32[NUM_ROWS/4][3*NUM_COLS/4]+= OBJECT_INTENSITY; + myReadout->image->data.F32[3*NUM_ROWS/4][NUM_COLS/4]+= OBJECT_INTENSITY; + myReadout->image->data.F32[3*NUM_ROWS/4][3*NUM_COLS/4]+= OBJECT_INTENSITY; + PS_IMAGE_SET_F32(trueImage, 0.0); + trueImage->data.F32[NUM_ROWS/4][NUM_COLS/4]+= OBJECT_INTENSITY; + trueImage->data.F32[NUM_ROWS/4][3*NUM_COLS/4]+= OBJECT_INTENSITY; + trueImage->data.F32[3*NUM_ROWS/4][NUM_COLS/4]+= OBJECT_INTENSITY; + trueImage->data.F32[3*NUM_ROWS/4][3*NUM_COLS/4]+= OBJECT_INTENSITY; + + myReadout = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, + binFactor, myStats, 2.0); + if (myReadout == NULL) { + printf("TEST ERROR: pmSubtractSky() returned NULL.\n"); + testStatus = 1; + } else { + for (i=0;iimage->data.F32[i][j] - trueImage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be %f\n", i, j, + myReadout->image->data.F32[i][j], trueImage->data.F32[i][j]); + testStatus = 1; + } + } + } + } + psFree(myReadout); + psFree(myStats); + psFree(myPoly); + psFree(trueImage); + printFooter(stdout, "pmSubtractSky", "doSubtractSkyWithObjects", true); + return(testStatus); +} + + +int test00( void ) +{ + int testStatus = 0; + + psTraceSetLevel(".", 0); + + // Bin Factor == 1 + printf("doSubtractSkySimple(1, 1, 1)\n"); + testStatus |= doSubtractSkySimple(1, 1, 1); + printf("doSubtractSkySimple(NUM_COLS, 1, 1)\n"); + testStatus |= doSubtractSkySimple(NUM_COLS, 1, 1); + + printf("doSubtractSkySimple(1, NUM_ROWS, 1)\n"); + testStatus |= doSubtractSkySimple(1, NUM_ROWS, 1); + printf("doSubtractSkySimple(NUM_COLS, NUM_ROWS, 1)\n"); + testStatus |= doSubtractSkySimple(NUM_COLS, NUM_ROWS, 1); + + // Bin Factor == 2 + printf("doSubtractSkySimple(1, 1, 2)\n"); + testStatus |= doSubtractSkySimple(1, 1, 2); + printf("doSubtractSkySimple(NUM_COLS, 1, 2)\n"); + testStatus |= doSubtractSkySimple(NUM_COLS, 1, 2); + printf("doSubtractSkySimple(1, NUM_ROWS, 2)\n"); + testStatus |= doSubtractSkySimple(1, NUM_ROWS, 2); + printf("doSubtractSkySimple(NUM_COLS, NUM_ROWS, 2)\n"); + testStatus |= doSubtractSkySimple(NUM_COLS, NUM_ROWS, 2); + + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 1)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 1); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 2)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 2); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 4)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 8); + + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 8)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 8); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 16)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 16); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 32)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 32); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 64)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 64); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 128)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 128); + printf("doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 256)\n"); + testStatus |= doSubtractSkyWithObjects(NUM_COLS, NUM_ROWS, 256); + + return(testStatus); +} + +#define NUM_ROWS_SMALL 16 +#define NUM_COLS_SMALL 16 +int test01( void ) +{ + int testStatus = 0; + psS32 i; + psS32 j; + psImage *tmpImageF32 = psImageAlloc(NUM_COLS_SMALL, NUM_ROWS_SMALL, PS_TYPE_F32); + psImage *tmpImageF64 = psImageAlloc(NUM_COLS_SMALL, NUM_ROWS_SMALL, PS_TYPE_F64); + // pmReadout *myReadout = pmReadoutAlloc(NUM_COLS_SMALL, NUM_ROWS_SMALL, tmpImageF32); + pmReadout *myReadout = pmReadoutAlloc(NULL); + myReadout->image = tmpImageF32; + pmReadout *rc = NULL; + psStats *myStats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + psPolynomial2D *myPoly = psPolynomial2DAlloc(PS_POLYNOMIAL_ORD, POLY_X_ORDER, POLY_Y_ORDER); + + printPositiveTestHeader(stdout, "pmSubtractSky", "Testing bad input parameter conditions."); + for (i=0;iimage->data.F32[i][j] = func(i, j); + } + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with NULL pmReadout. Should error.\n\n"); + rc = pmSubtractSky(NULL, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + if (rc != NULL) { + printf("TEST ERROR: pmSubtractSky() returned a non-NULL pmReadout\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with NULL pmReadout->image. Should error.\n\n"); + myReadout->image = NULL; + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + if (rc != NULL) { + printf("TEST ERROR: pmSubtractSky() returned a non-NULL pmReadout\n"); + testStatus = false; + } + myReadout->image = tmpImageF32; + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with PS_TYPE_F64 pmReadout->image. Should error.\n\n"); + myReadout->image = tmpImageF64; + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + if (rc != NULL) { + printf("TEST ERROR: pmSubtractSky() returned a non-NULL pmReadout\n"); + testStatus = false; + } + myReadout->image = tmpImageF32; + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with NULL fitSpec. Should return image, no ERROR, no WARNING.\n\n"); + rc = pmSubtractSky(myReadout, NULL, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractSky() returned something other than pmReadout\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with PM_FIT_NONE fit. Should return image, no ERROR, no WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_NONE, 1, myStats, 2.0); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractSky() returned something other than pmReadout\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with PM_FIT_SPLINE fit. Should return image, no ERROR, no WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_SPLINE, 1, myStats, 2.0); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractSky() returned something other than pmReadout\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with NULL myStats. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, NULL, 2.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + + printf("----------------------------------------------------------------\n"); + psU64 oldOptions = myStats->options; + myStats->options = 0; + printf("Calling pmSubtractSky() with no myStats->options specified. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + myStats->options = oldOptions; + + printf("----------------------------------------------------------------\n"); + oldOptions = myStats->options; + myStats->options = PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_MEDIAN; + printf("Calling pmSubtractSky() with multiple myStats->options specified. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, 2.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + myStats->options = oldOptions; + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with 0 binFactor. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 0, myStats, 2.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with -1 binFactor. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, -1, myStats, 2.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with -1.0 clipSD. Should fit entire image, generate WARNING.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, 1, myStats, -1.0); + for (i=0;iimage->data.F32[i][j])) { + printf("TEST ERROR: image[%d][%d] is %f, should be 0.0\n", i, j, + rc->image->data.F32[i][j]); + testStatus = false; + } + } + } + + printf("----------------------------------------------------------------\n"); + printf("Calling pmSubtractSky() with bogus psFit. Should generate Error.\n\n"); + rc = pmSubtractSky(myReadout, (void *) myPoly, 54321, 1, myStats, -1.0); + if (rc != myReadout) { + printf("TEST ERROR: pmSubtractSky() returned something other than pmReadout\n"); + testStatus = false; + } + + + // myReadout = pmSubtractSky(myReadout, (void *) myPoly, PM_FIT_POLYNOMIAL, + // 1, myStats, 2.0); + + + printf("----------------------------------------------------------------\n"); + psFree(myReadout); + psFree(myStats); + psFree(myPoly); + psFree(tmpImageF64); + printFooter(stdout, "pmSubtractSky", "Testing bad input parameter conditions.", true); + return(testStatus); +} Index: /branches/rel-1-1/psModules/test/extras/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/extras/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/extras/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/psModules/test/extras/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/extras/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/extras/Makefile.am (revision 12167) @@ -0,0 +1,19 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSMODULES_LIBS) + +# XXX is this desired? +# AM_CFLAGS = @AM_CFLAGS@ $(PSMODULES_CFLAGS) $(SRCINC) + +check_PROGRAMS = + +test: check Index: /branches/rel-1-1/psModules/test/imcombine/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/.cvsignore (revision 12167) @@ -0,0 +1,8 @@ +.deps +.libs +Makefile +Makefile.in +temp +tst_pmImageCombine +tst_pmReadoutCombine +tap_pmImageCombine Index: /branches/rel-1-1/psModules/test/imcombine/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/Makefile.am (revision 12167) @@ -0,0 +1,20 @@ +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSMODULES_LIBS) + +TESTS = \ + tap_pmImageCombine + +check_PROGRAMS = $(TESTS) + +CLEANFILES = $(TESTS) temp/* *~ + +test: check Index: /branches/rel-1-1/psModules/test/imcombine/tap_pmImageCombine.c =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/tap_pmImageCombine.c (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/tap_pmImageCombine.c (revision 12167) @@ -0,0 +1,67 @@ +#include +#include +#include +#include "tap.h" + +#define NUM 10 +#define SIZE 100 + +psArray *generate_images(void) +{ + psRandom *rng = psRandomAlloc(PS_RANDOM_TAUS, 12345); // Random Number Generator + + // Generate images + psArray *images = psArrayAlloc(NUM);// Array of images + for (int i = 0; i < NUM; i++) { + psImage *image = psImageAlloc(SIZE, SIZE, PS_TYPE_F32); // Image i + for (int y = 0; y < SIZE; y++) { + for (int x = 0; x < SIZE; x++) { + image->data.F32[y][x] = psRandomGaussian(rng); + } + } + images->data[i] = image; + } + psFree(rng); + + return images; +} + +int main(int argc, char *argv[]) +{ + plan_tests(6); + + diag("Image combination tests"); + + // Basic combination + { + psArray *images = generate_images(); + psImage *combined = pmCombineImages(NULL, NULL, images, NULL, NULL, 0, NULL, 1, 3.0); + ok(combined, "Combined image generated"); + skip_start(!combined, 5, "Combination failed."); + + ok(combined->type.type == PS_TYPE_F32, "Correct type"); + ok(combined->numCols == SIZE && combined->numRows == SIZE, "Correct size"); + int discrepant = 0; // Number of discrepant pixels + for (int y = 0; y < SIZE; y++) + { + for (int x = 0; x < SIZE; x++) { + if (fabsf(combined->data.F32[y][x]) > 3.0 / sqrt(NUM)) { + discrepant++; + } + } + } + ok(discrepant <= 30, "%d discrepant pixels", discrepant); // Should have 99.7% of 100x100 pixels OK + + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psImageStats(stats, combined, NULL, 0); + ok(stats->sampleMean < 3.0 / sqrt(NUM * SIZE * SIZE), "Sample mean: %e", stats->sampleMean); + ok(fabs(stats->sampleStdev - 1.0 / sqrt(NUM)) < 1.0e-3, "Sample stdev: %e", + stats->sampleStdev); + psFree(stats); + + skip_end(); + psFree(combined); + psFree(images); + } + +} Index: /branches/rel-1-1/psModules/test/imcombine/tst_pmImageCombine.c =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/tst_pmImageCombine.c (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/tst_pmImageCombine.c (revision 12167) @@ -0,0 +1,365 @@ +/** @file tst_pmImageCombine.c + * + * @brief Contains the tests for pmImageCombine.c: + * + * test00: This code will test the various functions in the pmImageCombine.c file. + * + * @author GLG, MHPCC + * + * XXX: Must verify the results internally. Don't use stdout file. + * XXX: Must test masks with pmRejectPixels() + * + * @version $Revision: 1.3 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-03-04 01:01:34 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ +#include "psTest.h" +#include "pslib.h" +#include "pmImageCombine.h" +static int test00(void); +testDescription tests[] = { + {test00, 000, "pmCombineImages()", true, false}, + {NULL} + }; + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + +psF32 genRanFloat(psF32 low, + psF32 high) +{ + psF32 ran1 = (((psF32) (random() % 10000)) / 10000.0); + return(low + (ran1 * (high - low))); +} + +psF32 genRanInt(psS32 low, + psS32 high) +{ + psF32 ran1 = (((psF32) (random() % 10000)) / 10000.0); + return((psS32) (low + (ran1 * (high - low)))); +} + +#define TST00_EXPANSION_FACTOR_X 1.0 +#define TST00_EXPANSION_FACTOR_Y 1.0 +#define TST00_OFFSET_X 0.0 +#define TST00_OFFSET_Y 0.0 +#define TST00_NUM_PIXELS 10 +#define TST00_MASK_VALUE 1 +#define TST00_NUM_ITERATIONS 4 +#define TST00_SIGMA_CLIP 1.0 +#define TST00_REJECTION_THRESHOLD 0.01 +#define TST00_GRADIENT_LIMIT 10.0 +/******************************************************************************* +NOTE: This function returns FALSE if there were no errors. + ******************************************************************************/ +psBool testCombineImages(psS32 numRows, + psS32 numCols, + psS32 numImages) +{ + printf("Testing pmCombineImages(%d, %d, %d)\n", numRows, numCols, numImages); + bool testStatus = false; + + psArray *images = psArrayAlloc(numImages); + psArray *errors = psArrayAlloc(numImages); + psArray *masks = psArrayAlloc(numImages); + images->n = images->nalloc; + errors->n = errors->nalloc; + masks->n = masks->nalloc; + for (psS32 i = 0 ; i < numImages ; i++) { + images->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F32); + errors->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F32); + masks->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_U8); + psImage *image = (psImage *) images->data[i]; + psImage *error = (psImage *) errors->data[i]; + psImage *mask = (psImage *) masks->data[i]; + PS_IMAGE_SET_F32(image, 0.0); + PS_IMAGE_SET_F32(error, 1.0); + PS_IMAGE_SET_U8(mask, 0); + + for (psS32 row = 0 ; row < numRows ; row++) { + for (psS32 col = 0 ; col < numCols ; col++) { + // Scale row/col to [-1.0:1.0] + psF32 rowScaled = ((psF32) (row - (numRows/2))) / ((psF32) (numRows/2)); + psF32 colScaled = ((psF32) (col - (numCols/2))) / ((psF32) (numCols/2)); + image->data.F32[row][col] = PS_SQR((2.0 - rowScaled) + (2.0 - colScaled)) + genRanFloat(0.0, 0.5); + } + } + } + + // + // Same as above except the numImages is wrong + // + psArray *imagesLong = psArrayAlloc(numImages+1); + psArray *errorsLong = psArrayAlloc(numImages+1); + psArray *masksLong = psArrayAlloc(numImages+1); + imagesLong->n = imagesLong->nalloc; + errorsLong->n = errorsLong->nalloc; + masksLong->n = masksLong->nalloc; + for (psS32 i = 0 ; i < numImages+1 ; i++) { + imagesLong->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F32); + errorsLong->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F32); + masksLong->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_U8); + psImage *image = (psImage *) imagesLong->data[i]; + psImage *error = (psImage *) errorsLong->data[i]; + psImage *mask = (psImage *) masksLong->data[i]; + PS_IMAGE_SET_F32(image, 0.0); + PS_IMAGE_SET_F32(error, 1.0); + PS_IMAGE_SET_U8(mask, 0); + + for (psS32 row = 0 ; row < numRows ; row++) { + for (psS32 col = 0 ; col < numCols ; col++) { + // Scale row/col to [-1.0:1.0] + psF32 rowScaled = ((psF32) (row - (numRows/2))) / ((psF32) (numRows/2)); + psF32 colScaled = ((psF32) (col - (numCols/2))) / ((psF32) (numCols/2)); + image->data.F32[row][col] = PS_SQR((2.0 - rowScaled) + (2.0 - colScaled)) + genRanFloat(0.0, 0.5); + } + } + } + + // + // Same as above except the type is wrong + // + psArray *imagesBadType = psArrayAlloc(numImages); + psArray *errorsBadType = psArrayAlloc(numImages); + psArray *masksBadType = psArrayAlloc(numImages); + imagesBadType->n = imagesBadType->nalloc; + errorsBadType->n = errorsBadType->nalloc; + masksBadType->n = masksBadType->nalloc; + for (psS32 i = 0 ; i < numImages ; i++) { + imagesBadType->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F64); + errorsBadType->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_F64); + masksBadType->data[i] = (psPtr *) psImageAlloc(numCols, numRows, PS_TYPE_S8); + psImage *image = (psImage *) imagesBadType->data[i]; + psImage *error = (psImage *) errorsBadType->data[i]; + psImage *mask = (psImage *) masksBadType ->data[i]; + PS_IMAGE_SET_F32(image, 0.0); + PS_IMAGE_SET_F32(error, 1.0); + PS_IMAGE_SET_U8(mask, 0); + + for (psS32 row = 0 ; row < numRows ; row++) { + for (psS32 col = 0 ; col < numCols ; col++) { + // Scale row/col to [-1.0:1.0] + psF32 rowScaled = ((psF32) (row - (numRows/2))) / ((psF32) (numRows/2)); + psF32 colScaled = ((psF32) (col - (numCols/2))) / ((psF32) (numCols/2)); + image->data.F32[row][col] = PS_SQR((2.0 - rowScaled) + (2.0 - colScaled)) + genRanFloat(0.0, 0.5); + } + } + } + + psPixels *pixels = psPixelsAlloc(TST00_NUM_PIXELS); + pixels->n = pixels->nalloc; + for (psS32 p = 0 ; p < TST00_NUM_PIXELS ; p++) { + psS32 col = genRanInt(0, numCols); + psS32 row = genRanInt(0, numRows); + pixels->data[p].x = (psF32) col; + pixels->data[p].y = (psF32) row; + psS32 im = genRanInt(0, numImages-1); + psImage *image = (psImage *) images->data[im]; + image->data.F32[row][col] += 100.0; + printf("Generating a bad pixel in image (%d) at (%d, %d)\n", im, row, col); + } + + psArray *questionablePixels = NULL; + psStats *stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + + //------------------------------------------------------------------------- + printf("Calling with a NULL images. Should generate error, return NULL.\n"); + psImage *outImg = pmCombineImages(NULL, &questionablePixels, NULL, errors, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a long images. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, imagesLong, errors, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a bad type images. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, imagesBadType, errors, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a long errors. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errorsLong, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a bad type errors. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errorsBadType, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a long masks. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errors, + masksLong, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a bad type masks. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errors, + masksBadType, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a NULL stats. Should generate error, return NULL.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errors, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, NULL); + if (outImg != NULL) { + printf("TEST ERROR: pmCombineImages() returned a non-NULL psImage.\n"); + psFree(outImg); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with acceptable data. Should generate a psImage.\n"); + outImg = pmCombineImages(NULL, &questionablePixels, images, errors, + masks, TST00_MASK_VALUE, pixels, TST00_NUM_ITERATIONS, + TST00_SIGMA_CLIP, stats); + if (outImg == NULL) { + printf("TEST ERROR: pmCombineImages() returned a NULL psImage.\n"); + testStatus = true; + } + if (0) { + for (psS32 p = 0 ; p < TST00_NUM_PIXELS ; p++) { + psS32 col = (psS32) (pixels->data[p]).x; + psS32 row = (psS32) (pixels->data[p]).y; + printf("------------------------------------------\n"); + printf("Pixel (%d, %d) in combined image is %f\n", row, col, outImg->data.F32[row][col]); + for (psS32 i = 0 ; i < numImages ; i++) { + psImage *image = (psImage *) images->data[i]; + printf("Pixel (after combine) (%d, %d) in image (%d) is %f\n", row, col, i, image->data.F32[row][col]); + } + } + } + + if (questionablePixels->n != numImages) { + printf("TEST ERROR: pmCombineImages(): questionablePixels->n was %ld, should have been %d\n", + questionablePixels->n, numImages); + testStatus = true; + } else { + // XXX: We should internally verify this with the pixels list, not merely use the stdout. + for (psS32 i = 0 ; i < questionablePixels->n ; i++) { + psPixels *myPixels = (psPixels *) questionablePixels->data[i]; + for (psS32 p = 0 ; p < myPixels->n ; p++) { + printf("Image %d, questionable pixel %d is (%f %f)\n", + i, p, myPixels->data[p].y, myPixels->data[p].x); + } + } + } + + psArray *expandTransforms = psArrayAlloc(numImages); + psArray *contractTransforms = psArrayAlloc(numImages); + expandTransforms->n = expandTransforms->nalloc; + contractTransforms->n = contractTransforms->nalloc; + for (psS32 im = 0 ; im < numImages ; im++) { + psPlaneTransform *ptExpand = psPlaneTransformAlloc(2, 2); + ptExpand->x->coeff[0][0] = TST00_OFFSET_X; + ptExpand->x->coeff[1][0] = TST00_EXPANSION_FACTOR_X; + ptExpand->y->coeff[0][0] = TST00_OFFSET_Y; + ptExpand->y->coeff[0][1] = TST00_EXPANSION_FACTOR_Y; + expandTransforms->data[im] = (psPtr *) ptExpand; + + psPlaneTransform *ptContract = psPlaneTransformAlloc(2, 2); + ptContract->x->coeff[0][0] = -TST00_OFFSET_X; + ptContract->x->coeff[1][0] = 1.0 / TST00_EXPANSION_FACTOR_X; + ptContract->y->coeff[0][0] = -TST00_OFFSET_Y; + ptContract->y->coeff[0][1] = 1.0 / TST00_EXPANSION_FACTOR_Y; + contractTransforms->data[im] = (psPtr *) ptContract; + } + + //------------------------------------------------------------------------- + // + // XXX: psRejectPixels() has known bugs. Specifically, in the psImageTransform() call. + // We exclude this from our tests. + // + printf("\n\n\nCalling pmRejectPixels() with acceptable data. Should generate a psArray.\n"); + psArray *pixelRejects = pmRejectPixels(images, NULL, questionablePixels, expandTransforms, + contractTransforms, TST00_REJECTION_THRESHOLD, + TST00_GRADIENT_LIMIT); + if (pixelRejects == NULL) { + printf("TEST ERROR: pmRejectPixels() returned a NULL psArray.\n"); + testStatus = true; + } else { + // XXX: We should internally verify this with the pixels list, not merely use the stdout. + for (psS32 i = 0 ; i < pixelRejects->n ; i++) { + psPixels *myPixels = (psPixels *) pixelRejects->data[i]; + printf("tst_pmImageCombine.c: Image %d had %ld rejects.\n", i, myPixels->n); + + for (psS32 p = 0 ; p < myPixels->n ; p++) { + printf("Image %d, rejected pixel %d is (%f %f)\n", i, p, + myPixels->data[p].y, myPixels->data[p].x); + } + } + psFree(pixelRejects); + } + + psFree(images); + psFree(errors); + psFree(masks); + psFree(imagesLong); + psFree(errorsLong); + psFree(masksLong); + psFree(imagesBadType); + psFree(errorsBadType); + psFree(masksBadType); + psFree(pixels); + psFree(stats); + + return(testStatus); +} + +/******************************************************************************* +NOTE: This function returns TRUE if there were no errors. + ******************************************************************************/ +int test00( void ) +{ + bool testStatus = false; + + testStatus|= testCombineImages(10, 10, 5); + + return(!testStatus); +} Index: /branches/rel-1-1/psModules/test/imcombine/tst_pmImageSubtract.c =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/tst_pmImageSubtract.c (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/tst_pmImageSubtract.c (revision 12167) @@ -0,0 +1,847 @@ +/** @file tst_pmImageSubtract.c + * + * @brief Contains the tests for pmImageSubtract.c: + * + * test00: This code will test the various functions in pmObjects.c + * + * @author GLG, MHPCC + * + * XXX: Most test simply ensure that the functions can be called with allowable + * data. More work need to be done to verify the results. + * + * @version $Revision: 1.1 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-05-25 22:02:46 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ +#include "psTest.h" +#include "pslib.h" +#include "pmImageSubtract.h" +#define ERROR_TOLERANCE 1.0 +static int test00(void); +static int test01(void); +static int test02(void); +static int test03(void); +testDescription tests[] = { + {test00, 000, "pmSubtractionKernelsAllocPOIS()", true, false}, + {test01, 000, "pmSubtractionKernelsAllocISIS()", true, false}, + {test02, 000, "pmSubtractionFindStamps()", true, false}, + {test03, 000, "pmSubtractionCalculateEquation()", true, false}, + {NULL} + }; + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + + +/******************************************************************************* +NOTE: This function returns FALSE if there were no errors. + +XXX: Call with various unallowable input parameters. + +XXX: Untested: we don't loop through the (u, v, xOrder, yOrder) psVectors and +ensure that each value is set correctly. + ******************************************************************************/ +psBool testPOISAlloc(psS32 size, + psS32 SpatialOrder) +{ + printf("Testing pmSubtractionKernelsAllocPOIS(%d, %d)\n", size, SpatialOrder); + + bool testStatus = false; + psS32 nBasisFunctions = (2 * size + 1) * (2 * size + 1) * (SpatialOrder + 1) * (SpatialOrder + 2) / 2; + + psSubtractionKernels *kernels = pmSubtractionKernelsAllocPOIS(size, SpatialOrder); + if (kernels == NULL) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() returned a NULL psSubtractionKernels.\n"); + testStatus = true; + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_POIS) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated the wrong kernels->type.\n"); + testStatus = true; + } + + if ((kernels->u == NULL) || + (kernels->u->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a NULL ->u member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a incorrect length ->u member.\n"); + testStatus = true; + } + + if ((kernels->v == NULL) || + (kernels->v->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a NULL ->v member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a incorrect length ->v member.\n"); + testStatus = true; + } + + if (kernels->sigma != NULL) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a non-NULL ->sigma member.\n"); + testStatus = true; + } + + if ((kernels->xOrder == NULL) || + (kernels->xOrder->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a NULL ->xOrder member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a incorrect length ->xOrder member.\n"); + testStatus = true; + } + + if ((kernels->yOrder == NULL) || + (kernels->yOrder->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a NULL ->yOrder member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a incorrect length ->yOrder member.\n"); + testStatus = true; + } + + if (kernels->subIndex != 0) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a non-zero ->subIndex member (%d).\n", kernels->subIndex); + testStatus = true; + } + + psS32 i = kernels->subIndex; + if ((kernels->u->data.F32[i] != 0) || + (kernels->v->data.F32[i] != 0)) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS(): the ->subIndex member points to a kernel with (%f, %f) (u, v) basis function.\n", + kernels->u->data.F32[i], kernels->v->data.F32[i]); + testStatus = true; + } + + if (kernels->preCalc != NULL) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated a non-NULL ->preCalc member.\n"); + testStatus = true; + } + + if (kernels->size != size) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated an incorrect ->size member (%d).\n", kernels->size); + testStatus = true; + } + + if (kernels->spatialOrder != SpatialOrder) { + printf("TEST ERROR: pmSubtractionKernelsAllocPOIS() generated an incorrect ->spatialOrder member (%d).\n", kernels->spatialOrder); + testStatus = true; + } + } + psFree(kernels); + return(testStatus); +} + +/******************************************************************************* +NOTE: This function returns TRUE if there were no errors. + ******************************************************************************/ +int test00( void ) +{ + bool testStatus = false; + + testStatus|= testPOISAlloc(1, 1); + testStatus|= testPOISAlloc(2, 3); + testStatus|= testPOISAlloc(3, 4); + + return(!testStatus); +} + +/******************************************************************************* +NOTE: This function returns FALSE if there were no errors. + +XXX: Call with various unallowable input parameters. + +XXX: Untested: we don't loop through the (u, v, xOrder, yOrder) psVectors and +ensure that each value is set correctly. We don't ensure that he preCalc +psImages are set correctly. + ******************************************************************************/ +psBool testISISAlloc(psS32 sigmaLength, + psS32 orderLength, + psS32 size, + psS32 SpatialOrder) +{ + printf("Testing pmSubtractionKernelsAllocISIS(%d, %d, %d, %d)\n", + sigmaLength, orderLength, size, SpatialOrder); + + psVector *sigmas = psVectorAlloc(sigmaLength, PS_TYPE_F32); + sigmas->n = sigmas->nalloc; + for (psS32 i = 0 ; i < sigmas->n ; i++) { + sigmas->data.F32[i] = 1.0 + (psF32) i; + } + psVector *orders = psVectorAlloc(orderLength, PS_TYPE_S32); + orders->n = orders->nalloc; + for (psS32 i = 0 ; i < orders->n ; i++) { + orders->data.S32[i] = i + 2; + } + + bool testStatus = false; + psS32 numSigmas = sigmas->n; + psS32 nBasisFunctions = 0; + for (psS32 s = 0 ; s < numSigmas ; s++) { + for (psS32 o = 0 ; o < orders->n ; o++) { + nBasisFunctions+= ((orders->data.S32[o] + 1) * (orders->data.S32[o] + 2) / 2); + } + } + nBasisFunctions*= ((SpatialOrder + 1) * (SpatialOrder + 2) / 2); + + psSubtractionKernels *kernels = pmSubtractionKernelsAllocISIS(sigmas, orders, size, SpatialOrder); + if (kernels == NULL) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() returned a NULL psSubtractionKernels.\n"); + testStatus = true; + } else { + if (kernels->type != PM_SUBTRACTION_KERNEL_ISIS) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated the wrong kernels->type.\n"); + testStatus = true; + } + + if ((kernels->u == NULL) || + (kernels->u->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->u member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->u member.\n"); + testStatus = true; + } + + if ((kernels->v == NULL) || + (kernels->v->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->v member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->v member.\n"); + testStatus = true; + } + + if ((kernels->sigma == NULL) || + (kernels->sigma->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->sigma member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->sigma member.\n"); + testStatus = true; + } + + if ((kernels->xOrder == NULL) || + (kernels->xOrder->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->xOrder member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->xOrder member.\n"); + testStatus = true; + } + + if ((kernels->yOrder == NULL) || + (kernels->yOrder->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->yOrder member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->yOrder member.\n"); + testStatus = true; + } + + if (kernels->subIndex != 0) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a non-zero ->subIndex member (%d).\n", kernels->subIndex); + testStatus = true; + } + + // + // Ensure that kernels->subIndex points to the correct kernel. + // + psS32 i = kernels->subIndex; + if ((kernels->u->data.F32[i] != 0.0) || + (kernels->v->data.F32[i] != 0.0) || + (kernels->xOrder->data.F32[i] != 0.0) || + (kernels->yOrder->data.F32[i] != 0.0) || + (kernels->sigma->data.F32[i] != sigmas->data.F32[0])) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS(): the ->subIndex member points to the wrong kernel.\n"); + printf("TEST ERROR: (u, v, xOrder, yOrder, sigma) is (%f, %f, %f, %f, %f).\n", + kernels->u->data.F32[i], kernels->v->data.F32[i], + kernels->xOrder->data.F32[i], kernels->yOrder->data.F32[i], + kernels->sigma->data.F32[i]); + testStatus = true; + } + + // + // Ensure that the preCalc images are allocated correctly. + // + if ((kernels->preCalc == NULL) || + (kernels->preCalc->n != nBasisFunctions)) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a NULL ->preCalc member or\n"); + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated a incorrect length ->preCalc member.\n"); + testStatus = true; + } else { + for (psS32 k = 0 ; k < kernels->u->n ; k++) { + psImage *kerImg = (psImage *) kernels->preCalc->data[k]; + if (kerImg == NULL) { + printf("TEST ERROR: the %d-th kernel preCalc image is NULL.\n", k); + testStatus = true; + } else { + if (kerImg->type.type != PS_TYPE_F32) { + printf("TEST ERROR: preCalc image %d had ioncorrect type.\n", k); + testStatus = true; + } + if ((kerImg->numRows != (1 + (2 * size))) || + (kerImg->numCols != (1 + (2 * size)))) { + printf("TEST ERROR: preCalc image %d had incorrect size (%d, %d).\n", k, + kerImg->numRows, kerImg->numCols); + testStatus = true; + } + } + } + } + + if (kernels->size != size) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated an incorrect ->size member (%d).\n", kernels->size); + testStatus = true; + } + + if (kernels->spatialOrder != SpatialOrder) { + printf("TEST ERROR: pmSubtractionKernelsAllocISIS() generated an incorrect ->spatialOrder member (%d).\n", kernels->spatialOrder); + testStatus = true; + } + } + psFree(sigmas); + + psFree(kernels->u); + psFree(kernels->v); + psFree(kernels->sigma); + psFree(kernels->xOrder); + psFree(kernels->yOrder); + psFree(kernels->preCalc); + psFree(kernels); + psFree(orders); + return(testStatus); +} + +/******************************************************************************* +NOTE: This function returns TRUE if there were no errors. + ******************************************************************************/ +int test01( void ) +{ + bool testStatus = false; + + /* + testStatus|= testISISAlloc(1, 1, 1, 1); + testStatus|= testISISAlloc(2, 2, 2, 2); + testStatus|= testISISAlloc(2, 3, 4, 5); + testStatus|= testISISAlloc(3, 4, 5, 6); + */ + + return(!testStatus); +} + + +/******************************************************************************* +NOTE: This function returns FALSE if there were no errors. + +XXX: Can we test to ensure that no stamps overlap? + +XXX: Test stamp alloc/dealloc functions. + ******************************************************************************/ +#define TST02_THRESHOLD 3.0 +#define TST02_MASK_VAL 1 +psBool testFindStamps(psS32 numCols, + psS32 numRows, + psS32 xNum, + psS32 yNum, + psS32 border) +{ + printf("Testing pmSubtractionFindStamps(%d, %d, %d, %d, %d)\n", + numCols, numRows, xNum, yNum, border); + bool testStatus = false; + + // Create a test image and set a single pixel in the center of each stamp. + psImage *tstImg = psImageAlloc(numCols, numRows, PS_TYPE_F32); + int numStamps = 0; + PS_IMAGE_SET_F32(tstImg, 0.0); + for (psS32 j = 0; j < yNum; j++) { + for (psS32 i = 0; i < xNum; i++) { + psS32 yMin = border + j * (numRows - 2.0 * border) / yNum; + psS32 yMax = PS_MIN(numRows-1, (border + (j + 1) * (numRows - 2.0 * border) / yNum) - 1); + psS32 xMin = border + i * (numCols - 2.0 * border) / xNum; + psS32 xMax = PS_MIN(numCols-1, (border + (i + 1) * (numCols - 2.0 * border) / xNum) - 1); + + tstImg->data.F32[(yMax+yMin)/2][(xMax+xMin)/2] = TST02_THRESHOLD + (psF32) (i + j); + numStamps++; + } + } + psImage *tmpMask= psImageAlloc(numCols, numRows, PS_TYPE_U8); + PS_IMAGE_SET_U8(tstImg, 0); + + //------------------------------------------------------------------------- + printf("Calling with a NULL psImage. Should generate error, return NULL.\n"); + psArray *stamps = pmSubtractionFindStamps(NULL, NULL, tmpMask, TST02_MASK_VAL, + TST02_THRESHOLD, xNum, yNum, + border); + if (stamps != NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + psFree(stamps); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a non-positive xNum. Should generate error, return NULL.\n"); + stamps = pmSubtractionFindStamps(NULL, tstImg, tmpMask, TST02_MASK_VAL, + TST02_THRESHOLD, 0, yNum, + border); + if (stamps != NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + psFree(stamps); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a non-positive yNum. Should generate error, return NULL.\n"); + stamps = pmSubtractionFindStamps(NULL, tstImg, tmpMask, TST02_MASK_VAL, + TST02_THRESHOLD, xNum, 0, + border); + if (stamps != NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + psFree(stamps); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a non-positive border. Should generate error, return NULL.\n"); + stamps = pmSubtractionFindStamps(NULL, tstImg, tmpMask, TST02_MASK_VAL, + TST02_THRESHOLD, xNum, yNum, + 0); + if (stamps != NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + psFree(stamps); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with acceptable input parameters, non-NULL mask.\n"); + stamps = pmSubtractionFindStamps(NULL, tstImg, tmpMask, TST02_MASK_VAL, + TST02_THRESHOLD, xNum, yNum, + border); + if (stamps == NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + testStatus = true; + } else { + if (stamps->n != numStamps) { + printf("TEST ERROR: %ld stamps were found, %d were expected.\n", + stamps->n, numStamps); + testStatus = true; + } + for (psS32 s = 0 ; s < stamps->n ; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + psS32 row = stamp->y; + psS32 col = stamp->x; + // printf("Stamp %d at (%d, %d) has a value of %f\n", s, row, col, tstImg->data.F32[row][col]); + if (tstImg->data.F32[row][col] < TST02_THRESHOLD) { + if (stamp->status != PM_STAMP_NONE) { + printf("TEST ERROR: stamp %d had peak value %f (below theshold) and the status was not set to PM_STAMP_NONE.\n", + s, tstImg->data.F32[row][col]); + testStatus = true; + } + } else { + if (stamp->status != PM_STAMP_RECALC) { + printf("TEST ERROR: stamp %d had peak value %f (above theshold) and the status was not set to PM_STAMP_RECALC.\n", + s, tstImg->data.F32[row][col]); + testStatus = true; + } + } + } + } + psFree(stamps); + + //------------------------------------------------------------------------- + printf("Calling with acceptable input parameters, NULL mask.\n"); + stamps = pmSubtractionFindStamps(NULL, tstImg, NULL, TST02_MASK_VAL, + TST02_THRESHOLD, xNum, yNum, + border); + if (stamps == NULL) { + printf("TEST ERROR: pmSubtractionFindStamps returned a non-NULL psArray.\n"); + testStatus = true; + } else { + if (stamps->n != numStamps) { + printf("TEST ERROR: %ld stamps were found, %d were expected.\n", + stamps->n, numStamps); + testStatus = true; + } + for (psS32 s = 0 ; s < stamps->n ; s++) { + pmStamp *stamp = (pmStamp *) stamps->data[s]; + psS32 row = stamp->y; + psS32 col = stamp->x; + //printf("Stamp %d at (%d, %d) has a value of %f\n", s, row, col, tstImg->data.F32[row][col]); + if (tstImg->data.F32[row][col] < TST02_THRESHOLD) { + if (stamp->status != PM_STAMP_NONE) { + printf("TEST ERROR: stamp %d had peak value %f (below theshold) and the status was not set to PM_STAMP_NONE.\n", + s, tstImg->data.F32[row][col]); + testStatus = true; + } + } else { + if (stamp->status != PM_STAMP_RECALC) { + printf("TEST ERROR: stamp %d had peak value %f (above theshold) and the status was not set to PM_STAMP_RECALC.\n", + s, tstImg->data.F32[row][col]); + testStatus = true; + } + } + } + } + + psFree(tstImg); + psFree(tmpMask); + psFree(stamps); + + return(testStatus); +} + + + +/******************************************************************************* +NOTE: This function returns TRUE if there were no errors. + ******************************************************************************/ +int test02( void ) +{ + bool testStatus = false; + + testStatus|= testFindStamps(100, 100, 2, 2, 2); + testStatus|= testFindStamps(100, 100, 10, 10, 2); + + return(!testStatus); +} + + +psF32 genRanFloat(psF32 low, + psF32 high) +{ + psF32 ran1 = (((psF32) (random() % 10000)) / 10000.0); + return(low + (ran1 * (high - low))); +} + +// +// XXX: POIS kernels are producing NANs if the image size is 20 or less. +// +// XXX: ISIS kernels are producing NANS if the TST03_ORDER_LENGTH is 2 or larger. +// +#define TST03_THRESHOLD 3.0 +#define TST03_MASK_VAL 1 +#define TST03_KERNEL_SIZE 2 +#define TST03_SPATIAL_ORDER 2 +#define TST03_ORDER_LENGTH 1 +#define TST03_SIGMA_LENGTH 1 +#define TST03_PSF_MAX 10.0 +#define TST03_BG 0.0 +#define TST03_IMAGE_SIZE 25 +#define TST03_NUM_COLS TST03_IMAGE_SIZE +#define TST03_NUM_ROWS TST03_IMAGE_SIZE +#define TST03_NUM_STAMPS 2 +#define TST03_NUM_STAMPS_COLS TST03_NUM_STAMPS +#define TST03_NUM_STAMPS_ROWS TST03_NUM_STAMPS +#define TST03_BORDER TST03_KERNEL_SIZE +//#define TST03_FOOTPRINT (((TST03_IMAGE_SIZE - (2 * TST03_BORDER)) / TST03_NUM_STAMPS) - TST03_KERNEL_SIZE) +#define TST03_FOOTPRINT 4 +#define TST03_PSF_WIDTH (TST03_FOOTPRINT/2 - 1) + +/******************************************************************************* +This routine generates an object in the center of the stamp defined by the +(xMin, xMax) and (yMin, yMax) boundary. + ******************************************************************************/ +psBool genObject(psImage *tstImg, + psImage *refImg, + psS32 xMin, + psS32 xMax, + psS32 yMin, + psS32 yMax) +{ + if (((1 + 2 * TST03_PSF_WIDTH) > (xMax - xMin)) || + ((1 + 2 * TST03_PSF_WIDTH) > (yMax - yMin))) { + printf("INCORRECT TEST CONFIGURATION: TST03_PSF_WIDTH is too big.\n"); + printf("TST03_PSF_WIDTH is %d: (xMin - xMax) is %d\n", TST03_PSF_WIDTH, (xMax - xMin)); + return(FALSE); + } + // + // This code basically creates a peak at the center of the stamp with + // a height of TST03_PSF_MAX + // + psS32 xCenter = (xMax + xMin) / 2; + psS32 yCenter = (yMax + yMin) / 2; + psF32 subImageWidth = 1.0 + sqrtf(PS_SQR(((psF32) ((yMax-yMin)/2))) + PS_SQR(((psF32) ((xMax-xMin)/2)))); + for (psS32 y = yMin ; y <= yMax ; y++) { + for (psS32 x = xMin ; x <= xMax ; x++) { + psF32 dist = sqrtf(PS_SQR((psF32) (y - yCenter)) + PS_SQR((psF32) (x - xCenter))); + psF32 pixel = TST03_PSF_MAX * PS_SQR(((psF32) (subImageWidth - dist)) / ((psF32) subImageWidth)); + if (pixel < 0.0) { + pixel = 0.0; + } + refImg->data.F32[y][x] = pixel + TST03_BG; + tstImg->data.F32[y][x] = pixel + TST03_BG; + // Add some noise for the test image. + tstImg->data.F32[y][x]+= genRanFloat(0.0, 1.0); + } + } + + return(TRUE); +} + +/******************************************************************************* +NOTE: This function returns FALSE if there were no errors. + +XXX: We should use a larger variety of input parameter configurations. + +I test the following functions here (since they linearly rely on a set of data +structures that the previoues ones generate): + pmSubtractionCalculateEquation() + pmSubtractionSolveEquation() + pmSubtractionRejectStamps() + pmSubtractionKernelImage() + ******************************************************************************/ +psBool testSubCalcEqu(psS32 numCols, + psS32 numRows, + psS32 xNum, + psS32 yNum, + psS32 border, + pmSubtractionKernelsType KernelType) +{ + printf("Testing pmSubtractionCalculateEquation(): \n"); + printf(" image size is (%d, %d)\n", numRows, numCols); + printf(" num stamps is (%d, %d). Border is %d\n", yNum, xNum, border); + if (KernelType == PM_SUBTRACTION_KERNEL_POIS) { + printf(" kernel type is PM_SUBTRACTION_KERNEL_POIS.\n"); + } else if (KernelType == PM_SUBTRACTION_KERNEL_ISIS) { + printf(" kernel type is PM_SUBTRACTION_KERNEL_ISIS.\n"); + } + bool testStatus = false; + + // Create a test image and set a single pixel in the center of each stamp. + psImage *tstImg = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *refImg = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psImage *maskImg = psImageAlloc(numCols, numRows, PS_TYPE_U8); + PS_IMAGE_SET_F32(tstImg, 0.0); + PS_IMAGE_SET_F32(maskImg, 0); + for (psS32 j = 0; j < yNum; j++) { + for (psS32 i = 0; i < xNum; i++) { + psS32 yMin = border + j * (numRows - 2.0 * border) / yNum; + psS32 yMax = PS_MIN(numRows-1, (border + (j + 1) * (numRows - 2.0 * border) / yNum) - 1); + psS32 xMin = border + i * (numCols - 2.0 * border) / xNum; + psS32 xMax = PS_MIN(numCols-1, (border + (i + 1) * (numCols - 2.0 * border) / xNum) - 1); + + genObject(tstImg, refImg, xMin, xMax, yMin, yMax); + } + } + printf("Generating stamps...\n"); + psArray *stamps = pmSubtractionFindStamps(NULL, tstImg, NULL, TST03_MASK_VAL, + TST03_THRESHOLD, xNum, yNum, + border); + + // + // PsVectors sigmas and orders are for ISIS kernels only. + // + psVector *sigmas = psVectorAlloc(TST03_SIGMA_LENGTH, PS_TYPE_F32); + sigmas->n = sigmas->nalloc; + for (psS32 i = 0 ; i < sigmas->n ; i++) { + sigmas->data.F32[i] = 1.0 + (psF32) i; + } + psVector *orders = psVectorAlloc(TST03_ORDER_LENGTH, PS_TYPE_S32); + orders->n = orders->nalloc; + for (psS32 i = 0 ; i < orders->n ; i++) { + orders->data.S32[i] = i + 2; + } + + // + // Create the subtraction kernels + // + printf("Generating kernel basis functions...\n"); + psSubtractionKernels *myKernels = NULL; + if (KernelType == PM_SUBTRACTION_KERNEL_POIS) { + myKernels = pmSubtractionKernelsAllocPOIS(TST03_KERNEL_SIZE, TST03_SPATIAL_ORDER); + } else if (KernelType == PM_SUBTRACTION_KERNEL_ISIS) { + myKernels = pmSubtractionKernelsAllocISIS(sigmas, orders, TST03_KERNEL_SIZE, TST03_SPATIAL_ORDER); + } + + if ((stamps == NULL) || + (myKernels == NULL)) { + printf("TEST ERROR: stamps or myKernels is NULL.\n"); + testStatus = true; + } else { + //------------------------------------------------------------------------- + printf("Calling with a NULL psArray stamps. Should generate error, return FALSE.\n"); + psBool rc = pmSubtractionCalculateEquation(NULL, refImg, tstImg, myKernels, TST03_FOOTPRINT); + if (rc == TRUE) { + printf("TEST ERROR: pmSubtractionCalculateEquation() returned TRUE.\n"); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a NULL reference images. Should generate error, return FALSE.\n"); + rc = pmSubtractionCalculateEquation(stamps, NULL, tstImg, myKernels, TST03_FOOTPRINT); + if (rc == TRUE) { + printf("TEST ERROR: pmSubtractionCalculateEquation() returned TRUE.\n"); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a NULL input images. Should generate error, return FALSE.\n"); + rc = pmSubtractionCalculateEquation(stamps, refImg, NULL, myKernels, TST03_FOOTPRINT); + if (rc == TRUE) { + printf("TEST ERROR: pmSubtractionCalculateEquation() returned TRUE.\n"); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with a NULL kernel basis functions. Should generate error, return FALSE.\n"); + rc = pmSubtractionCalculateEquation(stamps, refImg, tstImg, NULL, TST03_FOOTPRINT); + if (rc == TRUE) { + printf("TEST ERROR: pmSubtractionCalculateEquation() returned TRUE.\n"); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling with acceptable input parameters. Should return TRUE.\n"); + + rc = pmSubtractionCalculateEquation(stamps, refImg, tstImg, myKernels, TST03_FOOTPRINT); + if (rc != TRUE) { + printf("TEST ERROR: pmSubtractionCalculateEquation() returned FALSE.\n"); + testStatus = true; + } else { + + if (0) { + for (psS32 s = 0 ; s < stamps->n ; s++) { + printf("********************************* Stamp %d *********************************\n", s); + pmStamp *stamp = (pmStamp *) stamps->data[s]; + if (stamp->vector != NULL) { + PS_VECTOR_PRINT_F64(stamp->vector); + } + if (stamp->matrix != NULL) { + printf("Stamp matrix size is (%d, %d)\n", stamp->matrix->numRows, stamp->matrix->numCols); + PS_IMAGE_PRINT_F64(stamp->matrix); + } + } + } + + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionSolveEquation() with a NULL stamp argument. Should generate error, return FALSE.\n"); + psVector *solution = pmSubtractionSolveEquation(NULL, NULL); + if (solution != NULL) { + printf("TEST ERROR: pmSubtractionSolveEquation() returned non-NULL.\n"); + testStatus = true; + } + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionSolveEquation() with acceptable input parameters. Should return non-NULL.\n"); + solution = pmSubtractionSolveEquation(NULL, stamps); + if (solution == NULL) { + printf("TEST ERROR: pmSubtractionSolveEquation() returned NULL.\n"); + testStatus = true; + } else { + printf("The solution vector is:\n"); + for (psS32 i = 0 ; i < solution->n ; i++) { + printf("(%.2f) ", solution->data.F64[i]); + } + printf("\n"); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionRejectStamps() with acceptable input parameters. Should return TRUE.\n"); + rc = pmSubtractionRejectStamps(stamps, maskImg, 0xff, TST03_FOOTPRINT, 1.0, refImg, + tstImg, solution, myKernels); + if (rc != TRUE) { + printf("TEST ERROR: pmSubtractionRejectStamps() returned FALSE.\n"); + testStatus = true; + } else {} + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() with NULL solution. Should generate error, return NULL.\n"); + psImage *kernelImg = pmSubtractionKernelImage(NULL, NULL, myKernels, 0.0, 0.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() with NULL kernels. Should generate error, return NULL.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, NULL, 0.0, 0.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() unallowable x value. Should generate error, return NULL.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, myKernels, -2.0, 0.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() unallowable x value. Should generate error, return NULL.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, myKernels, 2.0, 0.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() unallowable y value. Should generate error, return NULL.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, myKernels, 0.0, -2.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() unallowable y value. Should generate error, return NULL.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, myKernels, 0.0, 2.0); + if (kernelImg != NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned non-NULL.\n"); + testStatus = true; + } + free(kernelImg); + + //------------------------------------------------------------------------- + printf("Calling pmSubtractionKernelImage() with acceptable input parameters. Should return a psImage.\n"); + kernelImg = pmSubtractionKernelImage(NULL, solution, myKernels, 0.5, 0.5); + if (kernelImg == NULL) { + printf("TEST ERROR: pmSubtractionKernelImage() returned NULL.\n"); + testStatus = true; + } else { + for (psS32 row = 0 ; row < kernelImg->numRows; row++) { + for (psS32 col = 0 ; col < kernelImg->numCols; col++) { + printf("%f ", kernelImg->data.F32[row][col]); + } + printf("\n"); + } + } + free(kernelImg); + + psFree(solution); + } + } + } + psFree(tstImg); + psFree(refImg); + psFree(stamps); + psFree(myKernels); + psFree(orders); + psFree(sigmas); + + return(testStatus); +} + +/******************************************************************************* +NOTE: This function returns TRUE if there were no errors. + ******************************************************************************/ +int test03( void ) +{ + bool testStatus = false; + + + srand(1995); + if (1) + testStatus|= testSubCalcEqu(TST03_NUM_COLS, + TST03_NUM_ROWS, + TST03_NUM_STAMPS_COLS, + TST03_NUM_STAMPS_ROWS, + TST03_BORDER, + PM_SUBTRACTION_KERNEL_POIS); + + + srand(1995); + if (1) + testStatus|= testSubCalcEqu(TST03_NUM_COLS, + TST03_NUM_ROWS, + TST03_NUM_STAMPS_COLS, + TST03_NUM_STAMPS_ROWS, + TST03_BORDER, + PM_SUBTRACTION_KERNEL_ISIS); + + + + return(!testStatus); +} Index: /branches/rel-1-1/psModules/test/imcombine/tst_pmReadoutCombine.c =================================================================== --- /branches/rel-1-1/psModules/test/imcombine/tst_pmReadoutCombine.c (revision 12167) +++ /branches/rel-1-1/psModules/test/imcombine/tst_pmReadoutCombine.c (revision 12167) @@ -0,0 +1,462 @@ +/** @file tst_pmReadoutCombine.c + * + * test00() This routine will test the basic functionality. + * + * @author GLG, MHPCC + * + * @version $Revision: 1.2 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-03-04 01:01:34 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + * + * XXX: Untested: + * S16, S32 types + * Multiple input readouts with varying sizes and offsets. + * params->fracLow and params->fracHigh + * params->nKeep + * (gain > 0.0) && (readnoise >= 0.0) (applyZeroScale == true) + * (gain > 0.0) && (readnoise >= 0.0) (applyZeroScale == false) + * + */ + +#include "psTest.h" +#include "pslib.h" +#include "pmReadoutCombine.h" +static int test00(void); +static int test01(void); +testDescription tests[] = { + {test00, 000, "pmSubtractBias(): Basic readout combines with no image overlap", true, false}, + {test01, 000, "pmSubtractBias(): input parameter error conditions", true, false}, + {NULL} + }; + +#define NUM_READOUTS 10 +#define INPUT_NUM_ROWS 20 +#define INPUT_NUM_COLS 20 +#define VEC_ZERO 1.0 +#define VEC_SCALE 2.0 + +psS32 VerifyTheOutput(psImage *output, psF32 expect) +{ + bool testStatus = true; + + for (psS32 i = 0 ; i < output->numRows ; i++) { + for (psS32 j = 0 ; j < output->numCols ; j++) { + if (output->data.F32[i][j] != expect) { + printf("TEST ERROR: output[%d][%d] is %.2f, should be %f\n", i, j, output->data.F32[i][j], expect); + testStatus = false; + } + } + } + return(testStatus); +} + + + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + +/****************************************************************************** +simpleCombineNoOverlap(): this routine creates a list of NUM_READOUTS input +readouts and calls pmReadoutCombine(). + *****************************************************************************/ +int simpleCombineNoOverlap(psS32 numInputCols, psS32 numInputRows) +{ + int i; + int r; + psList *list = NULL; + int baseRowsReadout[NUM_READOUTS]; + int baseColsReadout[NUM_READOUTS]; + int baseRows[NUM_READOUTS]; + int baseCols[NUM_READOUTS]; + int numRows[NUM_READOUTS]; + int numCols[NUM_READOUTS]; + int minOutRow = 10000; + int minOutCol = 10000; + int maxOutRow = -1; + int maxOutCol = -1; + psImage *output = NULL; + psCombineParams *params = (psCombineParams *) psAlloc(sizeof(psCombineParams)); + psVector *zero = psVectorAlloc(NUM_READOUTS, PS_TYPE_F32); + psVector *scale = psVectorAlloc(NUM_READOUTS, PS_TYPE_F32); + zero->n = zero->nalloc; + scale->n = scale->nalloc; + printPositiveTestHeader(stdout, "pmReadoutCombine", "simpleCombineNoOverlap"); + + for (i=0;idata.F32[i] = VEC_ZERO; + } + for (i=0;idata.F32[i] = VEC_SCALE; + } + + params->stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + params->maskVal = 1; + params->fracLow = 0.0; + params->fracHigh = 10000.0; + params->nKeep = 0; + + // + // Create a psList of psReadouts. The pixels in readout r will all have the + // value r. + // + for (r=0;rrow0)) = baseRows[r]; + *(int *) (& (tmpImage->col0)) = baseCols[r]; + pmReadout *tmpReadout = pmReadoutAlloc(NULL); + tmpReadout->row0 = 0; + tmpReadout->col0 = 0; + tmpReadout->image = tmpImage; + + minOutRow = PS_MIN(minOutRow, (baseRowsReadout[r] + baseRows[r])); + minOutCol = PS_MIN(minOutCol, (baseColsReadout[r] + baseCols[r])); + maxOutRow = PS_MAX(maxOutRow, (baseRowsReadout[r] + baseRows[r] + numRows[r])); + maxOutCol = PS_MAX(maxOutCol, (baseColsReadout[r] + baseCols[r] + numCols[r])); + + if (r == 0) { + list = psListAlloc(tmpReadout); + } else { + psListAdd(list, PS_LIST_HEAD, tmpReadout); + } + } + printf("tst_pmReadoutCombine(): (minOutRow, minOutCol) to (maxOutRow, maxOutCol) is (%d, %d) (%d, %d)\n", + minOutRow, minOutCol, maxOutRow, maxOutCol); + + output = pmReadoutCombine(output, list, params, zero, scale, true, 0.0, 0.0); + psF32 NR = (psF32) NUM_READOUTS; + psF32 expectedPixel = ((NR/2.0) * (VEC_ZERO + (VEC_ZERO + VEC_SCALE * (NR - 1)))) / NR; + + int testStatus = VerifyTheOutput(output, expectedPixel); + + psFree(params->stats); + psFree(params); + psFree(output); + psFree(zero); + psFree(scale); + + psListElem *tmpInput = (psListElem *) list->head; + while (NULL != tmpInput) { + pmReadout *tmpReadout = (pmReadout *) tmpInput->data; + psFree(tmpReadout); + tmpInput = tmpInput->next; + } + psFree(list); + + printFooter(stdout, "pmReadoutCombine", "simpleCombineNoOverlap", true); + return(testStatus); +} + +int test00( void ) +{ + int testStatus = 0; + + testStatus |= simpleCombineNoOverlap(1, 1); + testStatus |= simpleCombineNoOverlap(INPUT_NUM_COLS, 1); + testStatus |= simpleCombineNoOverlap(1, INPUT_NUM_ROWS); + testStatus |= simpleCombineNoOverlap(INPUT_NUM_COLS, INPUT_NUM_ROWS); + + return(testStatus); +} + +/****************************************************************************** +test01(): we simply call pmReadoutCombine() with a variety of erroneous input +parameter combinations and verify that it behaves properly. + *****************************************************************************/ +int test01() +{ + int testStatus = true; + int i; + int r; + psList *list = NULL; + int baseRowsReadout[NUM_READOUTS]; + int baseColsReadout[NUM_READOUTS]; + int baseRows[NUM_READOUTS]; + int baseCols[NUM_READOUTS]; + int numRows[NUM_READOUTS]; + int numCols[NUM_READOUTS]; + int minOutRow = 10000; + int minOutCol = 10000; + int maxOutRow = -1; + int maxOutCol = -1; + psImage *output = NULL; + psImage *rc = NULL; + psCombineParams *params = (psCombineParams *) psAlloc(sizeof(psCombineParams)); + psVector *zero = psVectorAlloc(NUM_READOUTS, PS_TYPE_F32); + psVector *zeroHalf = psVectorAlloc(NUM_READOUTS/2, PS_TYPE_F32); + psVector *zeroBig = psVectorAlloc(NUM_READOUTS+1, PS_TYPE_F32); + psVector *zeroF64 = psVectorAlloc(NUM_READOUTS, PS_TYPE_F64); + psVector *scale = psVectorAlloc(NUM_READOUTS, PS_TYPE_F32); + psVector *scaleHalf = psVectorAlloc(NUM_READOUTS/2, PS_TYPE_F32); + psVector *scaleBig = psVectorAlloc(NUM_READOUTS*2, PS_TYPE_F32); + psVector *scaleF64 = psVectorAlloc(NUM_READOUTS, PS_TYPE_F64); + zero->n = zero->nalloc; + zeroHalf->n = zeroHalf->nalloc; + zeroBig->n = zeroBig->nalloc; + zeroF64->n = zeroF64->nalloc; + scale->n = scale->nalloc; + scaleHalf->n = scaleHalf->nalloc; + scaleBig->n = scaleBig->nalloc; + scaleF64->n = scaleF64->nalloc; + for (i=0;idata.F32[i] = 3.0; + zeroBig->data.F32[i] = 3.0; + zero->data.F32[i] = VEC_ZERO; + zeroBig->data.F32[i] = VEC_ZERO; + } + for (i=0;idata.F32[i] = 6.0; + scaleBig->data.F32[i] = 6.0; + scale->data.F32[i] = VEC_SCALE; + scaleBig->data.F32[i] = VEC_SCALE; + } + printPositiveTestHeader(stdout, "pmReadoutCombine", "Testing bad input parameter conditions"); + + params->stats = psStatsAlloc(PS_STAT_SAMPLE_MEAN); + params->maskVal = 1; + params->fracLow = 0.0; + params->fracHigh = 10000.0; + params->nKeep = 0; + + for (r=0;rrow0)) = baseRows[r]; + *(int *) (& (tmpImage->col0)) = baseCols[r]; + pmReadout *tmpReadout = pmReadoutAlloc(NULL); + tmpReadout->row0 = 0; + tmpReadout->col0 = 0; + tmpReadout->image = tmpImage; + minOutRow = PS_MIN(minOutRow, (baseRowsReadout[r] + baseRows[r])); + minOutCol = PS_MIN(minOutCol, (baseColsReadout[r] + baseCols[r])); + maxOutRow = PS_MAX(maxOutRow, (baseRowsReadout[r] + baseRows[r] + numRows[r])); + maxOutCol = PS_MAX(maxOutCol, (baseColsReadout[r] + baseCols[r] + numCols[r])); + + if (r == 0) { + list = psListAlloc(tmpReadout); + } else { + psListAdd(list, PS_LIST_HEAD, tmpReadout); + } + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with NULL zero vector.\n"); + rc = pmReadoutCombine(NULL, list, params, NULL, scale, true, 0.0, 0.0); + if (rc != NULL) { + psF32 NR = (psF32) NUM_READOUTS; + psF32 expectedPixel = ((NR/2.0) * (0.0 + (0.0 + VEC_SCALE * (NR - 1)))) / NR; + if (false == VerifyTheOutput(rc, expectedPixel)) { + testStatus = false; + } + + if (rc->type.type != scale->type.type) { + printf("TEST ERROR: output readout->image has incorrect type.\n"); + testStatus = false; + } + psFree(rc); + } else { + printf("TEST ERROR: pmReadoutCombine() returned NULL\n"); + testStatus = false; + + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect length zero vector (too small). Should generate error.\n"); + rc = pmReadoutCombine(NULL, list, params, zeroHalf, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect type zero vector. Should generate error.\n"); + rc = pmReadoutCombine(NULL, list, params, zeroF64, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect length zero vector (too big). Should generate warning.\n"); + rc = pmReadoutCombine(output, list, params, zeroBig, scale, true, 0.0, 0.0); + if (rc != NULL) { + psF32 NR = (psF32) NUM_READOUTS; + psF32 expectedPixel = ((NR/2.0) * (VEC_ZERO + (VEC_ZERO + VEC_SCALE * (NR - 1)))) / NR; + + if (false == VerifyTheOutput(rc, expectedPixel)) { + testStatus = false; + } + psFree(rc); + rc = NULL; + } else { + printf("TEST ERROR: pmReadoutCombine() returned NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with NULL scale vector.\n"); + rc = pmReadoutCombine(output, list, params, zero, NULL, true, 0.0, 0.0); + + if (rc != NULL) { + psF32 NR = (psF32) NUM_READOUTS; + psF32 expectedPixel = ((NR/2.0) * (VEC_ZERO + (VEC_ZERO + 1.0 * (NR - 1)))) / NR; + if (false == VerifyTheOutput(rc, expectedPixel)) { + testStatus = false; + } + + if (rc->type.type != scale->type.type) { + printf("TEST ERROR: output readout->image has incorrect type.\n"); + testStatus = false; + } + psFree(rc); + } else { + printf("TEST ERROR: pmReadoutCombine() returned NULL\n"); + testStatus = false; + + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect length scale vector (too small). Should generate error.\n"); + rc = pmReadoutCombine(output, list, params, zero, scaleHalf, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect type scale vector. Should generate error.\n"); + rc = pmReadoutCombine(output, list, params, zero, scaleF64, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with incorrect length scale vector (too big). Should generate warning.\n"); + rc = pmReadoutCombine(output, list, params, zero, scaleBig, true, 0.0, 0.0); + if (rc != NULL) { + psF32 NR = (psF32) NUM_READOUTS; + psF32 expectedPixel = ((NR/2.0) * (VEC_ZERO + (VEC_ZERO + VEC_SCALE * (NR - 1)))) / NR; + + if (false == VerifyTheOutput(rc, expectedPixel)) { + testStatus = false; + } + psFree(rc); + rc = NULL; + } else { + printf("TEST ERROR: pmReadoutCombine() returned NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() insufficient size output image. Should generate error, return NULL.\n"); + output = psImageAlloc(1, 1, PS_TYPE_F32); + rc = pmReadoutCombine(output, list, params, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + psFree(output); + output = NULL; + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() row0/col0 too large. Should generate error, return NULL.\n"); + output = psImageAlloc(1, 1, PS_TYPE_F32); + *(psS32*)&output->row0 = 10000; + *(psS32*)&output->col0 = 10000; + rc = pmReadoutCombine(output, list, params, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + psFree(output); + output = NULL; + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with NULL input list. Should generate error, return NULL.\n"); + rc = pmReadoutCombine(output, NULL, params, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + printf("Calling pmReadoutCombine() with NULL params. Should generate error, return NULL.\n"); + rc = pmReadoutCombine(output, list, NULL, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------\n"); + psStatsOptions oldStatsOpts = params->stats->options |= PS_STAT_MIN; + printf("Calling pmReadoutCombine() with multiple stats->options. Should generate error, return NULL.\n"); + rc = pmReadoutCombine(output, list, params, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + params->stats->options = oldStatsOpts; + + printf("----------------------------------------------------------------------------\n"); + psStats *oldStats = params->stats; + printf("Calling pmReadoutCombine() with NULL param->stats. Should generate error, return NULL.\n"); + params->stats = NULL; + rc = pmReadoutCombine(output, list, params, zero, scale, true, 0.0, 0.0); + if (rc != NULL) { + printf("TEST ERROR: pmReadoutCombine() did not return NULL\n"); + testStatus = false; + } + params->stats = oldStats; + + printf("----------------------------------------------------------------------------\n"); + printf("============================================================================\n"); + + psFree(params->stats); + psFree(params); + // psFree(output); + // psFree(rc); + psFree(zero); + psFree(zeroHalf); + psFree(zeroBig); + psFree(zeroF64); + psFree(scale); + psFree(scaleHalf); + psFree(scaleBig); + psFree(scaleF64); + psListElem *tmpInput = (psListElem *) list->head; + while (NULL != tmpInput) { + pmReadout *tmpReadout = (pmReadout *) tmpInput->data; + psFree(tmpReadout); + tmpInput = tmpInput->next; + } + psFree(list); + + printFooter(stdout, "pmReadoutCombine", "Testing bad input parameter conditions", true); + return(testStatus); +} Index: /branches/rel-1-1/psModules/test/objects/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/objects/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/.cvsignore (revision 12167) @@ -0,0 +1,9 @@ +.deps +.libs +Makefile +Makefile.in +temp +tap_pmGrowthCurve +tap_pmSourceFitModel +tap_pmSourceFitModel_Delta +tap_pmSourcePhotometry Index: /branches/rel-1-1/psModules/test/objects/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/objects/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/Makefile.am (revision 12167) @@ -0,0 +1,23 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(top_builddir)/test/pstap/src/libpstap.la \ + $(PSMODULES_LIBS) + +# XXX is this desired? +# AM_CFLAGS = @AM_CFLAGS@ $(PSMODULES_CFLAGS) $(SRCINC) + +check_PROGRAMS = \ + tap_pmSourcePhotometry \ + tap_pmGrowthCurve \ + tap_pmSourceFitModel \ + tap_pmSourceFitModel_Delta + +test: check Index: /branches/rel-1-1/psModules/test/objects/tap_pmGrowthCurve.c =================================================================== --- /branches/rel-1-1/psModules/test/objects/tap_pmGrowthCurve.c (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/tap_pmGrowthCurve.c (revision 12167) @@ -0,0 +1,321 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +int main (void) +{ + pmModelGroupInit (); + + plan_tests(57); + + diag("pmGrowthCurve tests"); + + // test allocation + diag("offset of 0.0,0.0 wrt growth ref source"); + { + psMemId id = psMemGetId(); + + pmGrowthCurve *growth = pmGrowthCurveAlloc (2.0, 100.0, 15.0); + + ok(growth != NULL, "growth curve allocated"); + skip_start(growth == NULL, 0, "Skipping tests because pmShutterCorrParsAlloc() failed"); + + ok(growth->radius->n == (100.0 - 2.0), "correct number of growth radii"); + ok(growth->apMag->n == (100.0 - 2.0), "correct number of growth apMags"); + + ok_float(growth->refRadius, 15.0, "correct refRadius"); + ok_float(growth->maxRadius, 100.0, "correct maxRadius"); + + // does the growth curve correctly fix aperture mags? + + // generate a simple readout + pmReadout *readout = pmReadoutAlloc (NULL); + readout->image = psImageAlloc (64, 64, PS_TYPE_F32); + readout->mask = psImageAlloc (64, 64, PS_TYPE_U8); + + // create an empty reference image + psImageInit (readout->image, 0.0); + psImageInit (readout->mask, 0); + + // generate a simple psf + pmPSF *psf = pmPSFBuildSimple ("PS_MODEL_GAUSS", 1.5, 1.5, 0.0); + psf->growth = growth; + + pmGrowthCurveGenerate (readout, psf, false); + + // check ap mags for a few radii set by hand + ok_float_tol(growth->apMag->data.F32[0], -9.7805, 0.0001, "apMag at radius 0: %f", growth->apMag->data.F32[0]); + ok_float_tol(growth->apMag->data.F32[3], -10.3722, 0.0001, "apMag at radius 3: %f", growth->apMag->data.F32[3]); + ok_float_tol(growth->apMag->data.F32[10], -10.3759, 0.0001, "apMag at radius 10: %f", growth->apMag->data.F32[10]); + ok_float_tol(growth->apMag->data.F32[30], -10.3759, 0.0001, "apMag at radius 30: %f", growth->apMag->data.F32[30]); + + ok_float_tol(growth->apRef, -10.3759, 0.0001, "apMag at ref radius : %f", growth->apRef); + ok_float_tol(growth->fitMag, -10.3759, 0.0001, "fitMag : %f", growth->fitMag); + ok_float(growth->apLoss, 0.0, "apLoss : %f", growth->apLoss); + + // create template model and measure apMag at fractional offsets + // XXX note model is at 0.5,0.5 subpix center + pmModel *modelRef = pmModelAlloc(psf->type); + modelRef->params->data.F32[PM_PAR_SKY] = 0; + modelRef->params->data.F32[PM_PAR_I0] = 1000; + modelRef->params->data.F32[PM_PAR_XPOS] = 32.5; + modelRef->params->data.F32[PM_PAR_YPOS] = 32.5; + + // measure growth-corrected photometry: + pmSource *source = pmSourceAlloc (); + source->modelPSF = pmModelFromPSF (modelRef, psf); + source->type = PM_SOURCE_TYPE_STAR; + source->pixels = psMemIncrRefCounter (readout->image); + source->mask = psMemIncrRefCounter (readout->mask); + + source->modelPSF->dparams->data.F32[PM_PAR_I0] = 1; + source->mode = PM_SOURCE_MODE_SUBTRACTED; + + source->modelPSF->radiusFit = 15.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + double refMag = source->apMag; + + source->modelPSF->radiusFit = 10.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 8.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 6.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0003, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 4.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0020, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 3.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, -0.0001, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 2.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, -0.0075, 0.0001, "growth offset is is %f", refMag - source->apMag); + + // XXX include some apertures outside of growth correction range + + psFree(modelRef); + psFree(source); + psFree(readout); + psFree(psf); + + skip_end(); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test allocation + diag("offset of 0.2,0.2 wrt growth ref source"); + { + psMemId id = psMemGetId(); + + pmGrowthCurve *growth = pmGrowthCurveAlloc (2.0, 100.0, 15.0); + + ok(growth != NULL, "growth curve allocated"); + skip_start(growth == NULL, 0, "Skipping tests because pmShutterCorrParsAlloc() failed"); + + ok(growth->radius->n == (100.0 - 2.0), "correct number of growth radii"); + ok(growth->apMag->n == (100.0 - 2.0), "correct number of growth apMags"); + + ok_float(growth->refRadius, 15.0, "correct refRadius"); + ok_float(growth->maxRadius, 100.0, "correct maxRadius"); + + // does the growth curve correctly fix aperture mags? + + // generate a simple readout + pmReadout *readout = pmReadoutAlloc (NULL); + readout->image = psImageAlloc (64, 64, PS_TYPE_F32); + readout->mask = psImageAlloc (64, 64, PS_TYPE_U8); + + // create an empty reference image + psImageInit (readout->image, 0.0); + psImageInit (readout->mask, 0); + + // generate a simple psf + pmPSF *psf = pmPSFBuildSimple ("PS_MODEL_GAUSS", 1.5, 1.5, 0.0); + psf->growth = growth; + + pmGrowthCurveGenerate (readout, psf, false); + + // check ap mags for a few radii set by hand + ok_float_tol(growth->apMag->data.F32[0], -9.7805, 0.0001, "apMag at radius 0: %f", growth->apMag->data.F32[0]); + ok_float_tol(growth->apMag->data.F32[3], -10.3722, 0.0001, "apMag at radius 3: %f", growth->apMag->data.F32[3]); + ok_float_tol(growth->apMag->data.F32[10], -10.3759, 0.0001, "apMag at radius 10: %f", growth->apMag->data.F32[10]); + ok_float_tol(growth->apMag->data.F32[30], -10.3759, 0.0001, "apMag at radius 30: %f", growth->apMag->data.F32[30]); + + ok_float_tol(growth->apRef, -10.3759, 0.0001, "apMag at ref radius : %f", growth->apRef); + ok_float_tol(growth->fitMag, -10.3759, 0.0001, "fitMag : %f", growth->fitMag); + ok_float(growth->apLoss, 0.0, "apLoss : %f", growth->apLoss); + + // create template model and measure apMag at fractional offsets + // XXX note model is at 0.5,0.5 subpix center + pmModel *modelRef = pmModelAlloc(psf->type); + modelRef->params->data.F32[PM_PAR_SKY] = 0; + modelRef->params->data.F32[PM_PAR_I0] = 1000; + modelRef->params->data.F32[PM_PAR_XPOS] = 32.3; + modelRef->params->data.F32[PM_PAR_YPOS] = 32.3; + + // measure growth-corrected photometry: + pmSource *source = pmSourceAlloc (); + source->modelPSF = pmModelFromPSF (modelRef, psf); + source->type = PM_SOURCE_TYPE_STAR; + source->pixels = psMemIncrRefCounter (readout->image); + source->mask = psMemIncrRefCounter (readout->mask); + + source->modelPSF->dparams->data.F32[PM_PAR_I0] = 1; + source->mode = PM_SOURCE_MODE_SUBTRACTED; + + source->modelPSF->radiusFit = 15.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + double refMag = source->apMag; + + source->modelPSF->radiusFit = 10.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 8.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 6.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0004, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 4.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0026, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 3.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, -0.0001, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 2.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, -0.0103, 0.0001, "growth offset is is %f", refMag - source->apMag); + + // XXX include some apertures outside of growth correction range + + psFree(modelRef); + psFree(source); + psFree(readout); + psFree(psf); + + skip_end(); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + // test allocation + diag("offset of 0.4,0.4 wrt growth ref source"); + { + psMemId id = psMemGetId(); + + pmGrowthCurve *growth = pmGrowthCurveAlloc (2.0, 100.0, 15.0); + + ok(growth != NULL, "growth curve allocated"); + skip_start(growth == NULL, 0, "Skipping tests because pmShutterCorrParsAlloc() failed"); + + ok(growth->radius->n == (100.0 - 2.0), "correct number of growth radii"); + ok(growth->apMag->n == (100.0 - 2.0), "correct number of growth apMags"); + + ok_float(growth->refRadius, 15.0, "correct refRadius"); + ok_float(growth->maxRadius, 100.0, "correct maxRadius"); + + // does the growth curve correctly fix aperture mags? + + // generate a simple readout + pmReadout *readout = pmReadoutAlloc (NULL); + readout->image = psImageAlloc (64, 64, PS_TYPE_F32); + readout->mask = psImageAlloc (64, 64, PS_TYPE_U8); + + // create an empty reference image + psImageInit (readout->image, 0.0); + psImageInit (readout->mask, 0); + + // generate a simple psf + pmPSF *psf = pmPSFBuildSimple ("PS_MODEL_GAUSS", 1.5, 1.5, 0.0); + psf->growth = growth; + + pmGrowthCurveGenerate (readout, psf, false); + + // check ap mags for a few radii set by hand + ok_float_tol(growth->apMag->data.F32[0], -9.7805, 0.0001, "apMag at radius 0: %f", growth->apMag->data.F32[0]); + ok_float_tol(growth->apMag->data.F32[3], -10.3722, 0.0001, "apMag at radius 3: %f", growth->apMag->data.F32[3]); + ok_float_tol(growth->apMag->data.F32[10], -10.3759, 0.0001, "apMag at radius 10: %f", growth->apMag->data.F32[10]); + ok_float_tol(growth->apMag->data.F32[30], -10.3759, 0.0001, "apMag at radius 30: %f", growth->apMag->data.F32[30]); + + ok_float_tol(growth->apRef, -10.3759, 0.0001, "apMag at ref radius : %f", growth->apRef); + ok_float_tol(growth->fitMag, -10.3759, 0.0001, "fitMag : %f", growth->fitMag); + ok_float(growth->apLoss, 0.0, "apLoss : %f", growth->apLoss); + + // create template model and measure apMag at fractional offsets + // XXX note model is at 0.5,0.5 subpix center + pmModel *modelRef = pmModelAlloc(psf->type); + modelRef->params->data.F32[PM_PAR_SKY] = 0; + modelRef->params->data.F32[PM_PAR_I0] = 1000; + modelRef->params->data.F32[PM_PAR_XPOS] = 32.1; + modelRef->params->data.F32[PM_PAR_YPOS] = 32.1; + + // measure growth-corrected photometry: + pmSource *source = pmSourceAlloc (); + source->modelPSF = pmModelFromPSF (modelRef, psf); + source->type = PM_SOURCE_TYPE_STAR; + source->pixels = psMemIncrRefCounter (readout->image); + source->mask = psMemIncrRefCounter (readout->mask); + + source->modelPSF->dparams->data.F32[PM_PAR_I0] = 1; + source->mode = PM_SOURCE_MODE_SUBTRACTED; + + source->modelPSF->radiusFit = 15.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + double refMag = source->apMag; + + source->modelPSF->radiusFit = 10.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 8.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 6.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0006, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 4.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0038, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 3.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, +0.0000, 0.0001, "growth offset is is %f", refMag - source->apMag); + + source->modelPSF->radiusFit = 2.0; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, -0.0164, 0.0001, "growth offset is is %f", refMag - source->apMag); + + // XXX include some apertures outside of growth correction range + + psFree(modelRef); + psFree(source); + psFree(readout); + psFree(psf); + + skip_end(); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + } + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel.c =================================================================== --- /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel.c (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel.c (revision 12167) @@ -0,0 +1,191 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +bool fitModels (psRandom *seed, float flux, float radius, float sigma); +bool fitModelFlux (psRandom *seed, float flux, float radius, float sigma); + +// tests to check accuracy of fitted models for a range of fit radii, sigma, and flux. +// we generate a fake source, then fit the model to it. the difference or fractional +// difference between the true and fitted parameters is saved. +// we run these tests 200 times each an examine the resulting distribution of deviations. +// the tests fail if the stdevs are more than 2x the expected stdev based on poisson noise +// ** is 2x too generous? +int main (void) +{ + pmModelGroupInit (); + pmSourceFitModelInit (15, 0.01, 1.0, true); + + // psTraceSetLevel ("psModules.objects.pmSourceFitModel", 10); + // psTraceSetLevel ("psLib.math.psMinimizeLMChi2", 10); + + plan_tests(240); + + // build a gauss-deviate vector (mean = 0.0, sigma = 1.0) + psRandom *seed = psRandomAlloc (PS_RANDOM_TAUS, 0); + + static float radius[] = {3.0, 5.0, 7.0, 10.0, 15.0, 25.0}; + static float sigma[] = {1.0, 1.5, 2.0}; + static float flux[] = {10000.0, 3000.0, 1000.0, 300.0, 100.0, 30.0, 10.0}; + + // drop-dead simple: should always work + bool status = fitModels (seed, 10000.0, 10.0, 2.0); + skip_start (!status, 240, "*** BASIC MODEL FITTING FAILS! *** : skipping related tests"); + + for (int i = 0; i < sizeof(sigma)/sizeof(float); i++) { + for (int j = 0; j < sizeof(radius)/sizeof(float); j++) { + for (int k = 0; k < sizeof(flux)/sizeof(float); k++) { + fitModels (seed, flux[k], radius[j], sigma[i]); + } + } + } + + skip_end(); + return exit_status(); +} + +static psVector *par1 = NULL; +static psVector *par2 = NULL; +static psVector *par3 = NULL; +static psVector *par4 = NULL; +static psVector *par5 = NULL; + +# define NMODELS 200 +bool fitModels (psRandom *seed, float flux, float radius, float sigma) +{ + + psMemId id = psMemGetId(); + + diag("test model fit - flux: %f, radius: %f, sigma: %f", flux, radius, sigma); + + par1 = psVectorAllocEmpty (NMODELS, PS_TYPE_F32); + par2 = psVectorAllocEmpty (NMODELS, PS_TYPE_F32); + par3 = psVectorAllocEmpty (NMODELS, PS_TYPE_F32); + par4 = psVectorAllocEmpty (NMODELS, PS_TYPE_F32); + par5 = psVectorAllocEmpty (NMODELS, PS_TYPE_F32); + + for (int i = 0; i < NMODELS; i++) { + fitModelFlux (seed, flux, radius, sigma); + } + + float signal = 2*M_PI*sigma*sigma*flux; + float noise = sqrt(signal + 4*M_PI*sigma*sigma*(100 + PS_SQR(5))); + float dMag = noise / signal; + float dPos = sigma * dMag; + diag ("signal: %f, noise: %f, dMag: %f, dPos: %f", signal, noise, dMag, dPos); + + bool status = (par1->n == NMODELS); + ok (status, "all %d tests passed", NMODELS); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psVectorStats (stats, par1, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Io ref/fit stdev: %e : %e sigma", stats->sampleStdev, stats->sampleStdev/dMag); + psVectorStats (stats, par2, NULL, NULL, 0); + ok ((stats->sampleStdev/dPos < 2.0), "Xo ref/fit stdev: %e : %e sigma", stats->sampleStdev, stats->sampleStdev/dPos); + psVectorStats (stats, par3, NULL, NULL, 0); + ok ((stats->sampleStdev/dPos < 2.0), "Yo ref/fit stdev: %e : %e sigma", stats->sampleStdev, stats->sampleStdev/dPos); + psVectorStats (stats, par4, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Sx ref/fit stdev: %e : %e sigma", stats->sampleStdev, stats->sampleStdev/dMag); + psVectorStats (stats, par5, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Sy ref/fit stdev: %e : %e sigma", stats->sampleStdev, stats->sampleStdev/dMag); + + psFree (par1); + psFree (par2); + psFree (par3); + psFree (par4); + psFree (par5); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, stderr, false), "no memory leaks"); + return status; +} + +bool fitModelFlux (psRandom *seed, float flux, float radius, float sigma) +{ + + psVector *rnd = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd->n; i++) { + rnd->data.F32[i] = psRandomGaussian (seed); + } + + // construct a model + pmSource *source = pmSourceAlloc (); + source->moments = pmMomentsAlloc (); + + pmModelType type = pmModelSetType ("PS_MODEL_GAUSS"); + source->modelEXT = pmModelAlloc (type); + + source->modelEXT->params->data.F32[0] = 0; + source->modelEXT->params->data.F32[1] = flux; + source->modelEXT->params->data.F32[2] = 50; + source->modelEXT->params->data.F32[3] = 50; + source->modelEXT->params->data.F32[4] = 2.0*sqrt(sigma); + source->modelEXT->params->data.F32[5] = 2.0*sqrt(sigma); + source->modelEXT->params->data.F32[6] = 0; + + source->pixels = psImageAlloc (100, 100, PS_TYPE_F32); + source->weight = psImageAlloc (100, 100, PS_TYPE_F32); + source->mask = psImageAlloc (100, 100, PS_TYPE_U8); + psImageInit (source->pixels, 0.0); + psImageInit (source->weight, 0.0); + psImageInit (source->mask, 0); + + // create an image with the model, and add noise: gain is 1, subtracted sky is 100, readnoise is 5 + pmModelAdd (source->pixels, source->mask, source->modelEXT, false, false); + int npix = 0; + for (int j = 0; j < source->pixels->numRows; j++) { + for (int i = 0; i < source->pixels->numCols; i++) { + float flux = source->pixels->data.F32[j][i]; + float var = flux + 100 + PS_SQR(5); + source->pixels->data.F32[j][i] += rnd->data.F32[npix]*sqrt(var); + source->weight->data.F32[j][i] = var; + npix ++; + if (npix == rnd->n) + npix = 0; + } + } + + // psFits *fits = psFitsOpen ("test.fits", "w"); + // psFitsWriteImage (fits, NULL, source->pixels, 0, NULL); + // psFitsClose (fits); + + // save the original model, modify params + pmModel *guess = pmModelCopy (source->modelEXT); + guess->params->data.F32[1] *= 0.9; + guess->params->data.F32[2] += 1.0; + guess->params->data.F32[3] -= 1.0; + guess->params->data.F32[4] *= 0.9; + guess->params->data.F32[5] *= 0.9; + + psImageKeepCircle (source->mask, 50, 50, radius, "OR", PM_MASK_MARK); + bool status = pmSourceFitModel (source, guess, PM_SOURCE_FIT_EXT); + if (!status) { + psFree (rnd); + psFree (source); + psFree (guess); + return false; + } + psImageKeepCircle (source->mask, 50, 50, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + par1->data.F32[par1->n] = (source->modelEXT->params->data.F32[1] / guess->params->data.F32[1]); + par2->data.F32[par2->n] = (source->modelEXT->params->data.F32[2] - guess->params->data.F32[2]); + par3->data.F32[par3->n] = (source->modelEXT->params->data.F32[3] - guess->params->data.F32[3]); + par4->data.F32[par4->n] = (source->modelEXT->params->data.F32[4] / guess->params->data.F32[4]); + par5->data.F32[par5->n] = (source->modelEXT->params->data.F32[5] / guess->params->data.F32[5]); + + psVectorExtend (par1, 100, 1); + psVectorExtend (par2, 100, 1); + psVectorExtend (par3, 100, 1); + psVectorExtend (par4, 100, 1); + psVectorExtend (par5, 100, 1); + + psFree (rnd); + psFree (source); + psFree (guess); + + return true; +} Index: /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel_Delta.c =================================================================== --- /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel_Delta.c (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/tap_pmSourceFitModel_Delta.c (revision 12167) @@ -0,0 +1,238 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +bool fitModels (psRandom *seed, float flux, float radius, float sigma); +bool fitModelFlux (psRandom *seed, float flux, float radius, float sigma); +bool printDev (float *src, float *par, int Npar, bool absolute); + +int main (void) +{ + pmModelGroupInit (); + pmSourceFitModelInit (15, 0.01, 1.0, true); + + float flux = 10000; + float sigma = 2.0; + float radius = 10.0; + + plan_tests(240); + + // build a gauss-deviate vector (mean = 0.0, sigma = 1.0) + psRandom *seed = psRandomAlloc (PS_RANDOM_TAUS, 0); + + // noise vector to noise up the image + psVector *rnd = psVectorAlloc (1000, PS_TYPE_F32); + for (int i = 0; i < rnd->n; i++) { + rnd->data.F32[i] = psRandomGaussian (seed); + } + + // construct a GAUSS model + pmSource *source = pmSourceAlloc (); + source->moments = pmMomentsAlloc (); + + pmModelType type = pmModelSetType ("PS_MODEL_GAUSS"); + source->modelEXT = pmModelAlloc (type); + + source->modelEXT->params->data.F32[0] = 0; + source->modelEXT->params->data.F32[1] = flux; + source->modelEXT->params->data.F32[2] = 50; + source->modelEXT->params->data.F32[3] = 50; + source->modelEXT->params->data.F32[4] = 2.0*sqrt(sigma); + source->modelEXT->params->data.F32[5] = 2.0*sqrt(sigma); + source->modelEXT->params->data.F32[6] = 0; + + source->pixels = psImageAlloc (100, 100, PS_TYPE_F32); + source->weight = psImageAlloc (100, 100, PS_TYPE_F32); + source->mask = psImageAlloc (100, 100, PS_TYPE_U8); + psImageInit (source->pixels, 0.0); + psImageInit (source->weight, 0.0); + psImageInit (source->mask, 0); + + // create an image with the model, and add noise: gain is 1, subtracted sky is 100, readnoise is 5 + pmModelAdd (source->pixels, source->mask, source->modelEXT, false, false); + int npix = 0; + for (int j = 0; j < source->pixels->numRows; j++) { + for (int i = 0; i < source->pixels->numCols; i++) { + float flux = source->pixels->data.F32[j][i]; + float var = flux + 100 + PS_SQR(5); + source->pixels->data.F32[j][i] += rnd->data.F32[npix]*sqrt(var); + source->weight->data.F32[j][i] = var; + npix ++; + if (npix == rnd->n) + npix = 0; + } + } + + // fit with a PGAUSS model + pmModel *guess; + + type = pmModelSetType ("PS_MODEL_PGAUSS"); + guess = pmModelAlloc (type); + + guess->params->data.F32[0] = 0; + guess->params->data.F32[1] = flux; + guess->params->data.F32[2] = 50; + guess->params->data.F32[3] = 50; + guess->params->data.F32[4] = 2.0*sqrt(sigma); + guess->params->data.F32[5] = 2.0*sqrt(sigma); + guess->params->data.F32[6] = 0; + // modify guess + guess->params->data.F32[1] *= 0.9; + guess->params->data.F32[2] += 1.0; + guess->params->data.F32[3] -= 1.0; + guess->params->data.F32[4] *= 0.9; + guess->params->data.F32[5] *= 0.9; + + psImageKeepCircle (source->mask, 50, 50, radius, "OR", PM_MASK_MARK); + pmSourceFitModel (source, guess, PM_SOURCE_FIT_EXT); + psImageKeepCircle (source->mask, 50, 50, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 1, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 2, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 3, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 4, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 5, false); + + psImageKeepCircle (source->mask, 50, 50, radius, "OR", PM_MASK_MARK); + pmSourceFitModel (source, guess, PM_SOURCE_FIT_PSF); + psImageKeepCircle (source->mask, 50, 50, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 1, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 2, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 3, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 4, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 5, false); + + // muck up the Sx, Sy terms a little : how does this affect the dparams? + float Sx = guess->params->data.F32[4]; + float Sy = guess->params->data.F32[5]; + guess->params->data.F32[4] = 0.95*Sx; + guess->params->data.F32[5] = 0.95*Sy; + + psImageKeepCircle (source->mask, 50, 50, radius, "OR", PM_MASK_MARK); + pmSourceFitModel (source, guess, PM_SOURCE_FIT_PSF); + psImageKeepCircle (source->mask, 50, 50, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 1, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 2, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 3, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 4, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 5, false); + + // muck up the Sx, Sy terms a little : how does this affect the dparams? + guess->params->data.F32[4] = 0.99*Sx; + guess->params->data.F32[5] = 0.99*Sy; + + psImageKeepCircle (source->mask, 50, 50, radius, "OR", PM_MASK_MARK); + pmSourceFitModel (source, guess, PM_SOURCE_FIT_PSF); + psImageKeepCircle (source->mask, 50, 50, radius, "AND", PS_NOT_U8(PM_MASK_MARK)); + + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 1, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 2, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 3, true); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 4, false); + printDev (source->modelEXT->params->data.F32, guess->params->data.F32, 5, false); + + psFree (rnd); + psFree (source); + psFree (guess); + + return true; +} + +bool printDev (float *src, float *fit, int Npar, bool absolute) +{ + float dev; + if (absolute) { + dev = (src[Npar]-fit[Npar]); + fprintf (stderr, "par %d : %f vs %f : abso dev %f\n", Npar, src[Npar], fit[Npar], dev); + } else { + dev = (src[Npar]/fit[Npar]); + fprintf (stderr, "par %d : %f vs %f : frac dev %f\n", Npar, src[Npar], fit[Npar], dev); + } + return true; +} + +# if (0) + int main (void) +{ + pmModelGroupInit (); + pmSourceFitModelInit (15, 0.01, 1.0, true); + + plan_tests(240); + + // build a gauss-deviate vector (mean = 0.0, sigma = 1.0) + psRandom *seed = psRandomAlloc (PS_RANDOM_TAUS, 0); + + static float radius[] = {3.0, 5.0, 7.0, 10.0, 15.0, 25.0}; + static float sigma[] = {1.0, 1.5, 2.0}; + static float flux[] = {10000.0, 3000.0, 1000.0, 300.0, 100.0, 30.0, 10.0}; + + for (int i = 0; i < sizeof(sigma)/sizeof(float); i++) { + for (int j = 0; j < sizeof(radius)/sizeof(float); j++) { + for (int k = 0; k < sizeof(flux)/sizeof(float); k++) { + fitModels (seed, flux[k], radius[j], sigma[i]); + } + } + } + + return exit_status(); +} + +static psVector *par1 = NULL; +static psVector *par2 = NULL; +static psVector *par3 = NULL; +static psVector *par4 = NULL; +static psVector *par5 = NULL; + +bool fitModels (psRandom *seed, float flux, float radius, float sigma) +{ + + psMemId id = psMemGetId(); + + diag("test model fit - flux: %f, radius: %f, sigma: %f", flux, radius, sigma); + + par1 = psVectorAllocEmpty (200, PS_TYPE_F32); + par2 = psVectorAllocEmpty (200, PS_TYPE_F32); + par3 = psVectorAllocEmpty (200, PS_TYPE_F32); + par4 = psVectorAllocEmpty (200, PS_TYPE_F32); + par5 = psVectorAllocEmpty (200, PS_TYPE_F32); + + for (int i = 0; i < 200; i++) { + fitModelFlux (seed, flux, radius, sigma); + } + + float signal = 2*M_PI*sigma*sigma*flux; + float noise = sqrt(signal + 4*M_PI*sigma*sigma*(100 + PS_SQR(5))); + float dMag = noise / signal; + float dPos = sigma * dMag; + diag ("signal: %f, noise: %f, dMag: %f, dPos: %f", signal, noise, dMag, dPos); + + psStats *stats = psStatsAlloc (PS_STAT_SAMPLE_MEAN | PS_STAT_SAMPLE_STDEV); + psVectorStats (stats, par1, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Io ref/fit stdev: %f : %f sigma", stats->sampleStdev, stats->sampleStdev/dMag); + psVectorStats (stats, par2, NULL, NULL, 0); + ok ((stats->sampleStdev/dPos < 2.0), "Xo ref/fit stdev: %f : %f sigma", stats->sampleStdev, stats->sampleStdev/dPos); + psVectorStats (stats, par3, NULL, NULL, 0); + ok ((stats->sampleStdev/dPos < 2.0), "Yo ref/fit stdev: %f : %f sigma", stats->sampleStdev, stats->sampleStdev/dPos); + psVectorStats (stats, par4, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Sx ref/fit stdev: %f : %f sigma", stats->sampleStdev, stats->sampleStdev/dMag); + psVectorStats (stats, par5, NULL, NULL, 0); + ok ((stats->sampleStdev/dMag < 2.0), "Sy ref/fit stdev: %f : %f sigma", stats->sampleStdev, stats->sampleStdev/dMag); + + psFree (par1); + psFree (par2); + psFree (par3); + psFree (par4); + psFree (par5); + psFree (stats); + + ok(!psMemCheckLeaks (id, NULL, NULL, false), "no memory leaks"); + return true; +} + +# endif Index: /branches/rel-1-1/psModules/test/objects/tap_pmSourcePhotometry.c =================================================================== --- /branches/rel-1-1/psModules/test/objects/tap_pmSourcePhotometry.c (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/tap_pmSourcePhotometry.c (revision 12167) @@ -0,0 +1,167 @@ +#include +#include +#include +#include + +#include "tap.h" +#include "pstap.h" + +bool pmSourcePhotometry_TestOffsets (double radius, double sigma, double fitMag, double apMag, double err1, double err2); + +int main (void) +{ + + pmModelGroupInit (); + + plan_tests(240); + + diag("pmSourcePhotometry tests"); + + // test consistency of interpolated photometry for a range of apertures (for a fixed PSF sigma) + pmSourcePhotometry_TestOffsets (15.0, 2.0, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets (10.0, 2.0, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 8.0, 2.0, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 7.0, 2.0, -10.3759, -10.3759, +0.0000, +0.0001); + pmSourcePhotometry_TestOffsets ( 6.0, 2.0, -10.3759, -10.3758, +0.0001, +0.0004); + pmSourcePhotometry_TestOffsets ( 5.0, 2.0, -10.3759, -10.3733, +0.0003, +0.0011); + pmSourcePhotometry_TestOffsets ( 4.0, 2.0, -10.3759, -10.3520, +0.0006, +0.0018); + pmSourcePhotometry_TestOffsets ( 3.0, 2.0, -10.3759, -10.2626, +0.0001, +0.0002); + pmSourcePhotometry_TestOffsets ( 2.0, 2.0, -10.3759, -9.7729, -0.0027, -0.0089); + pmSourcePhotometry_TestOffsets ( 1.0, 2.0, -10.3759, -8.8689, -0.0051, -0.0161); + + // test consistency of interpolated photometry for a range of apertures (for a fixed PSF sigma) + pmSourcePhotometry_TestOffsets (15.0, 1.5, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets (10.0, 1.5, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 8.0, 1.5, -10.3759, -10.3759, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 7.0, 1.5, -10.3759, -10.3759, +0.0000, +0.0001); + pmSourcePhotometry_TestOffsets ( 6.0, 1.5, -10.3759, -10.3758, +0.0001, +0.0004); + pmSourcePhotometry_TestOffsets ( 5.0, 1.5, -10.3759, -10.3733, +0.0003, +0.0011); + pmSourcePhotometry_TestOffsets ( 4.0, 1.5, -10.3759, -10.3520, +0.0006, +0.0018); + pmSourcePhotometry_TestOffsets ( 3.0, 1.5, -10.3759, -10.2626, +0.0001, +0.0002); + pmSourcePhotometry_TestOffsets ( 2.0, 1.5, -10.3759, -9.7729, -0.0027, -0.0089); + pmSourcePhotometry_TestOffsets ( 1.0, 1.5, -10.3759, -8.8689, -0.0051, -0.0161); + + // test consistency of interpolated photometry for a range of apertures (for a fixed PSF sigma) + pmSourcePhotometry_TestOffsets (15.0, 1.0, -9.4955, -9.4955, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets (10.0, 1.0, -9.4955, -9.4955, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 8.0, 1.0, -9.4955, -9.4955, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 7.0, 1.0, -9.4955, -9.4955, +0.0000, +0.0000); + pmSourcePhotometry_TestOffsets ( 6.0, 1.0, -9.4955, -9.4955, +0.0000, +0.0001); + pmSourcePhotometry_TestOffsets ( 5.0, 1.0, -9.4955, -9.4955, +0.0001, +0.0002); + pmSourcePhotometry_TestOffsets ( 4.0, 1.0, -9.4955, -9.4968, +0.0006, +0.0022); + pmSourcePhotometry_TestOffsets ( 3.0, 1.0, -9.4955, -9.4945, +0.0021, +0.0068); + pmSourcePhotometry_TestOffsets ( 2.0, 1.0, -9.4955, -9.3323, -0.0034, -0.0118); + pmSourcePhotometry_TestOffsets ( 1.0, 1.0, -9.4955, -8.6844, -0.0141, -0.0440); + + return exit_status(); +} + +bool pmSourcePhotometry_TestOffsets (double radius, double sigma, double fitMag, double apMag, double err1, double err2) +{ + psMemId id = psMemGetId(); + + diag("pmSourcePhotometry test offsets for radius %f", radius); + + // generate a simple readout + pmReadout *readout = pmReadoutAlloc (NULL); + skip_start(readout == NULL, 0, "Skipping tests because pmReadoutAlloc failed"); + + readout->image = psImageAlloc (64, 64, PS_TYPE_F32); + readout->mask = psImageAlloc (64, 64, PS_TYPE_U8); + + // create an empty reference image + psImageInit (readout->image, 0.0); + psImageInit (readout->mask, 0); + + // generate a simple psf + pmPSF *psf = pmPSFBuildSimple ("PS_MODEL_GAUSS", sigma, sigma, 0.0); + // psf->growth = pmGrowthCurveAlloc (2.0, 100.0, 15.0); + // pmGrowthCurveGenerate (readout, psf, false); + + // create a source + pmSource *source = pmSourceAlloc (); + source->pixels = psMemIncrRefCounter (readout->image); + source->mask = psMemIncrRefCounter (readout->mask); + source->type = PM_SOURCE_TYPE_STAR; + source->mode = PM_SOURCE_MODE_SUBTRACTED; + + // create template model and measure apMag at fractional offsets + pmModel *modelRef = pmModelAlloc(psf->type); + modelRef->params->data.F32[PM_PAR_SKY] = 0; + modelRef->params->data.F32[PM_PAR_I0] = 1000; + modelRef->params->data.F32[PM_PAR_XPOS] = 32.5; + modelRef->params->data.F32[PM_PAR_YPOS] = 32.5; + + // create modelPSF from this model + source->modelPSF = pmModelFromPSF (modelRef, psf); + source->modelPSF->dparams->data.F32[PM_PAR_I0] = 1; + source->modelPSF->radiusFit = radius; + + // measure photometry for centered source (fractional pix : 0.5,0.5) + // pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_GROWTH | PM_SOURCE_PHOT_INTERP); + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(source->psfMag, fitMag, 0.0002, "source fitMag is %f", source->psfMag); + ok_float_tol(source->apMag, apMag, 0.0002, "source apMag is %f", source->apMag); + ok_float(source->errMag, 0.001, "source errMag is %f", source->errMag); + float refMag = source->apMag; + + // these use an offset of 0.2,0.2 + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.3; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.3; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err1, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.7; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.3; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err1, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.3; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.7; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err1, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.7; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.7; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err1, 0.0002, "offset error is %f", refMag - source->apMag); + + // these use an offset of 0.4,0.4 + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.1; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.1; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err2, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.9; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.1; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err2, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.1; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.9; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err2, 0.0002, "offset error is %f", refMag - source->apMag); + + // measure photometry for a sub-pixel offset position + source->modelPSF->params->data.F32[PM_PAR_XPOS] = 32.9; + source->modelPSF->params->data.F32[PM_PAR_YPOS] = 32.9; + pmSourceMagnitudes (source, psf, PM_SOURCE_PHOT_INTERP); + ok_float_tol(refMag - source->apMag, err2, 0.0002, "offset error is %f", refMag - source->apMag); + + psFree (source); + psFree (modelRef); + psFree (psf); + psFree (readout); + + skip_end(); + + ok(!psMemCheckLeaks (id, NULL, stdout, false), "no memory leaks"); + return true; +} Index: /branches/rel-1-1/psModules/test/objects/tst_pmObjects01.c =================================================================== --- /branches/rel-1-1/psModules/test/objects/tst_pmObjects01.c (revision 12167) +++ /branches/rel-1-1/psModules/test/objects/tst_pmObjects01.c (revision 12167) @@ -0,0 +1,1300 @@ +/** @file tst_pmObjects.c + * + * @brief Contains the tests for pmObjects.c: + * + * test00: This code will test the pmObjects routines. + * + * @author GLG, MHPCC + * + * XXX: Must test + * pmSourceRoughClass + * many others... + * + * + * XXX: Must test output results for many other functions. + * + * XXX: There are many cases where row/col can be switched in the code. + * We must test that here by using non-square images. All tests + * in this file should be run with non-square images. + * + * XXX: Memory leaks are not being caught. If I allocated a psVector in these functions + * and never deallocate, no error is generated. + * + * XXX: Much of this file is commented out due to the API changes in rel 7. + * + * +Fully Tested: + pmPeakAlloc() + pmMomentsAlloc() +Weakly Tested: + pmSourceMoments() + most of psObjects.c is not tested + * + * @version $Revision: 1.8 $ $Name: not supported by cvs2svn $ + * @date $Date: 2006-03-04 01:01:34 $ + * + * Copyright 2004 Maui High Performance Computing Center, University of Hawaii + */ +#include "psTest.h" +#include "pslib.h" +#include "pmObjects.h" +#include "pmModelGroup.h" + +#define NUM_ROWS 10 +#define NUM_COLS 10 +#define ERROR_TOLERANCE 1.0 +#define ERROR_TOL 0.001 +static int test00(void); +static int test01(void); +static int test02(void); +static int test03(void); +static int test04(void); +static int test05(void); +//static int test06(void); +//static int test07(void); +//static int test08(void); +//static int test09(void); +//static int test15(void); +//static int test16(void); +//static int test20(void); +testDescription tests[] = { + {test00, 000, "pmObjects: structure allocators and deallocators", true, false}, + {test01, 001, "pmObjects: psFindVectorPeaks()", true, false}, + {test02, 001, "pmObjects: psFindImagePeaks()", true, false}, + {test03, 001, "pmObjects: pmCullPeaks()", true, false}, + {test04, 001, "pmObjects: pmSourceLocalSky()", true, false}, + {test05, 001, "pmObjects: pmSourceMoments()", true, false}, + // {test06, 001, "pmObjects: pmSourceSetPixelsCircle()", true, false}, + // {test07, 001, "pmObjects: pmMin()", true, false}, + // {test08, 001, "pmObjects: pmSourceModelGuess()", true, false}, + //{test09, 001, "pmObjects: pmSourceContour()", true, false}, + //{test15, 001, "pmObjects: pmSourceAddModel()", true, false}, + //{test16, 001, "pmObjects: pmSourceSubModel()", true, false}, + //{test20, 001, "pmObjects: pmSourceSubModel()", true, false}, + {NULL} + }; + +int main(int argc, char* argv[]) +{ + psLogSetFormat("HLNM"); + // + // We include the function names here in psTraceSetLevel() commands for + // debugging convenience. There is no guarantee that this list of functions + // is complete. + // + psTraceSetLevel(".", 0); + psTraceSetLevel("pmPeakAlloc", 0); + psTraceSetLevel("pmMomentsAlloc", 0); + psTraceSetLevel("modelFree", 0); + psTraceSetLevel("pmModelAlloc", 0); + psTraceSetLevel("sourceFree", 0); + psTraceSetLevel("pmSourceAlloc", 0); + psTraceSetLevel("pmFindVectorPeaks", 0); + psTraceSetLevel("getRowVectorFromImage", 0); + psTraceSetLevel("myListAddPeak", 0); + psTraceSetLevel("pmFindImagePeaks", 0); + psTraceSetLevel("isItInThisRegion", 0); + psTraceSetLevel("pmCullPeaks", 0); + psTraceSetLevel("pmPeaksSubset", 0); + psTraceSetLevel("pmSourceLocalSky", 0); + psTraceSetLevel("checkRadius2", 0); + psTraceSetLevel("pmSourceMoments", 0); + psTraceSetLevel("pmComparePeakAscend", 0); + psTraceSetLevel("pmComparePeakDescend", 0); + psTraceSetLevel("pmSourcePSFClump", 0); + psTraceSetLevel("pmSourceRoughClass", 0); + psTraceSetLevel("pmSourceDefinePixels", 0); + psTraceSetLevel("pmSourceModelGuess", 0); + psTraceSetLevel("pmModelEval", 0); + psTraceSetLevel("findValue", 0); + psTraceSetLevel("pmSourceContour", 0); + psTraceSetLevel("pmSourceFitModel_v5", 0); + psTraceSetLevel("pmSourceFitModel", 0); + psTraceSetLevel("p_pmSourceAddOrSubModel", 0); + psTraceSetLevel("pmSourceAddModel", 0); + psTraceSetLevel("pmSourceSubModel", 0); + + return !runTestSuite(stderr, "Test Point Driver", tests, argc, argv); +} + +/****************************************************************************** +test00(): Test the various allocators and deallocators. + *****************************************************************************/ +int test00( void ) +{ + bool testStatus = true; + psTraceSetLevel(".", 0); + + printf("Testing pmPeakAlloc()...\n"); + pmPeak *tmpPeak = pmPeakAlloc(1, 2, 3.0, PM_PEAK_LONE); + if (tmpPeak == NULL) { + printf("TEST ERROR: pmPeakAlloc() returned a NULL pmPeak\n"); + testStatus = false; + } else { + if (tmpPeak->x != 1) { + printf("TEST ERROR: pmPeakAlloc() improperly set pmPeak->x\n"); + testStatus = false; + } + if (tmpPeak->y != 2) { + printf("TEST ERROR: pmPeakAlloc() improperly set pmPeak->y\n"); + testStatus = false; + } + if (tmpPeak->counts != 3.0) { + printf("TEST ERROR: pmPeakAlloc() improperly set pmPeak->counts\n"); + testStatus = false; + } + if (tmpPeak->class != PM_PEAK_LONE) { + printf("TEST ERROR: pmPeakAlloc() improperly set pmPeak->class\n"); + testStatus = false; + } + } + psFree(tmpPeak); + + printf("Testing pmMomentsAlloc()...\n"); + pmMoments *tmpMoments = pmMomentsAlloc(); + if (tmpMoments == NULL) { + printf("TEST ERROR: pmMomentsAlloc() returned a NULL pmMoments\n"); + testStatus = false; + } else { + if ((fabs(tmpMoments->x-0.0) > ERROR_TOL) || + (fabs(tmpMoments->y-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Sx-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Sy-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Sxy-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Sum-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Peak-0.0) > ERROR_TOL) || + (fabs(tmpMoments->Sky-0.0) > ERROR_TOL) || + (tmpMoments->nPixels != 0)) { + printf("TEST ERROR: pmMomentsAlloc() did not properly initialize the pmMoments structure.\n"); + printf(" tmpMoments->x is %f\n", tmpMoments->x); + printf(" tmpMoments->y is %f\n", tmpMoments->y); + printf(" tmpMoments->Sx is %f\n", tmpMoments->Sx); + printf(" tmpMoments->Sy is %f\n", tmpMoments->Sy); + printf(" tmpMoments->Sxy is %f\n", tmpMoments->Sxy); + printf(" tmpMoments->Sum is %f\n", tmpMoments->Sum); + printf(" tmpMoments->Peak is %f\n", tmpMoments->Peak); + printf(" tmpMoments->Sky is %f\n", tmpMoments->Sky); + printf(" tmp Moments->nPixels is %d\n", tmpMoments->nPixels); + testStatus = false; + } + } + psFree(tmpMoments); + + + // + // Loop through each type of model + // + psS32 i = 0; + while (0 != pmModelParameterCount(i)) { + printf("Testing pmModelAlloc(%s)...\n", pmModelGetType(0)); + pmModel *tmpModel = pmModelAlloc(i); + if (tmpModel == NULL) { + printf("TEST ERROR: pmModelAlloc(%s) returned a NULL pmModel\n", pmModelGetType(0)); + testStatus = false; + } else { + + /* XXX: Should we test that the members were set correctly? + if ((tmpModel->params->n != 7) || (tmpModel->dparams->n != 7)) { + printf("TEST ERROR: pmModelAlloc(PS_MODEL_GAUSS) allocated an incorrect number of params (%ld, %ld)\n", + tmpModel->params->n, tmpModel->dparams->n); + testStatus = false; + } else { + for (psS32 i = 0 ; i < 7 ; i++) { + if ((tmpModel->params->data.F32[i] != 0.0) || + (tmpModel->dparams->data.F32[i] != 0.0)) { + printf("TEST ERROR: pmModelAlloc(PS_MODEL_GAUSS) did not ininitialize the params/dparams array to 0.0.\n"); + testStatus = false; + } + } + } + */ + } + psFree(tmpModel); + i++; + } + + + pmSource *tmpSource = pmSourceAlloc(); + if (tmpSource == NULL) { + printf("TEST ERROR: pmSourceAlloc() returned a NULL pmSource\n"); + testStatus = false; + } + psFree(tmpSource); + + return(testStatus); +} + +/****************************************************************************** +test01(): we first test pmFindVectorPeaks() with a variety of bad input +parameters. Then we test it with a simple vector both 1- and multi-elements. + *****************************************************************************/ +#define TST01_VECTOR_LENGTH 10 +bool test_pmFindVectorPeaks(int n) +{ + bool testStatus = true; + psVector *inData = psVectorAlloc(n, PS_TYPE_F32); + inData->n = inData->nalloc; + psVector *outData = NULL; + + printf("-------------- Calling test_pmFindVectorPeaks on an %d size vector. --------------\n", n); + // + // Test first pixel peak. + // + printf("Test pmFindVectorPeaks() with a first-element peak.\n"); + for (psS32 i = 0 ; i < n ; i++) { + inData->data.F32[i] = (float) (n-i); + } + inData->data.F32[0] = (float) n; + + outData= pmFindVectorPeaks(inData, 0.0); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + if (outData->n != 1) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + if (outData->data.U32[0] != 0) { + printf("TEST ERROR: Did not find peak at element 0.\n"); + testStatus = false; + } + psFree(outData); + } + + // + // Test first pixel peak, large threshold + // + printf("Test pmFindVectorPeaks() with a first-element peak, large threshold.\n"); + for (psS32 i = 0 ; i < n ; i++) { + inData->data.F32[i] = (float) (n-i); + } + inData->data.F32[0] = (float) n; + + outData= pmFindVectorPeaks(inData, (float) (n*n)); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + + if (outData->n != 0) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + psFree(outData); + + // Skip remaining tests if the input vector has length 1. + if (n == 1) { + psFree(inData); + return(testStatus); + } + } + + // + // Test last pixel peak. + // + printf("Test pmFindVectorPeaks() with a last-element peak.\n"); + for (psS32 i = 0 ; i < n ; i++) { + inData->data.F32[i] = (float) (i); + } + inData->data.F32[n-1] = (float) n; + + outData= pmFindVectorPeaks(inData, 0.0); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + + if (outData->n != 1) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + if (outData->data.U32[0] != n-1) { + printf("TEST ERROR: Did not find peak at element %d.\n", n-1); + testStatus = false; + } + psFree(outData); + } + + // + // Test last pixel peak, large threshold. + // + printf("Test pmFindVectorPeaks() with a last-element peak, large threshold.\n"); + for (psS32 i = 0 ; i < n ; i++) { + inData->data.F32[i] = (float) (i); + } + inData->data.F32[n-1] = (float) n; + + outData= pmFindVectorPeaks(inData, (float) (n*n)); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + + if (outData->n != 0) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + psFree(outData); + } + + // + // Test interior peaks. + // Set all even number elements to be peaks. + // + printf("Test pmFindVectorPeaks() with all even-numbered elements peak.\n"); + for (psS32 i = 0 ; i < n ; i++) { + if (0 == i%2) { + inData->data.F32[i] = (float) (2 * i); + } else { + inData->data.F32[i] = (float) (i); + } + } + inData->data.F32[0] = (float) n; + + + outData= pmFindVectorPeaks(inData, 0.0); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + + if (outData->n != n/2) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + + for (psS32 i = 0 ; i < outData->n ; i++) { + if (outData->data.U32[i] != (2 * i)) { + printf("TEST ERROR: the %d-th peak is element number %d\n", i, outData->data.U32[i]); + testStatus = false; + } + } + psFree(outData); + } + + // + // Test interior peaks, with threshold = n*n. + // Should generate an empty output psVector. + // + printf("Test pmFindVectorPeaks() with all even-numbered elements peak, large threshold.\n"); + outData= pmFindVectorPeaks(inData, (float) (n*n)); + if (outData == NULL) { + printf("TEST ERROR: pmFindVectorPeaks returned a NULL psVector.\n"); + testStatus = false; + } else { + + if (outData->n != 0) { + printf("TEST ERROR: outData->n is %ld\n", outData->n); + testStatus = false; + } + psFree(outData); + } + + psFree(inData); + return(testStatus); +} + +int test01( void ) +{ + bool testStatus = true; + psVector *tmpVec = NULL; + psVector *tmpVecF64 = psVectorAlloc(TST01_VECTOR_LENGTH, PS_TYPE_F64); + psVector *tmpVecEmpty = psVectorAlloc(0, PS_TYPE_F32); + tmpVecF64->n = tmpVecF64->nalloc; + tmpVecEmpty->n = tmpVecEmpty->nalloc; + + psTraceSetLevel(".", 0); + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindVectorPeaks with NULL psVector. Should generate error and return NULL.\n"); + tmpVec = pmFindVectorPeaks(NULL, 0.0); + if (tmpVec != NULL) { + printf("TEST ERROR: pmFindVectorPeaks() returned a non-NULL psVector.\n"); + testStatus = false; + psFree(tmpVec); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindVectorPeaks with empty psVector. Should generate error and return NULL.\n"); + tmpVec = pmFindVectorPeaks(tmpVecEmpty, 0.0); + if (tmpVec != NULL) { + printf("TEST ERROR: pmFindVectorPeaks() returned a non-NULL psVector.\n"); + testStatus = false; + psFree(tmpVec); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindVectorPeaks with PS_TYPE_F64 psVector. Should generate error and return NULL.\n"); + tmpVec = pmFindVectorPeaks(tmpVecF64, 0.0); + if (tmpVec != NULL) { + printf("TEST ERROR: pmFindVectorPeaks() returned a non-NULL psVector.\n"); + testStatus = false; + psFree(tmpVec); + } + testStatus&= test_pmFindVectorPeaks(1); + testStatus&= test_pmFindVectorPeaks(TST01_VECTOR_LENGTH); + + psFree(tmpVecF64); + psFree(tmpVecEmpty); + return(testStatus); +} + +/****************************************************************************** +test02(): +// XXX: Must test flat peaks. +// XXX: test 1-by-n and n-by-1 images. + *****************************************************************************/ +#define TST02_NUM_ROWS 5 +#define TST02_NUM_COLS 5 +bool test_pmFindImagePeaks(int numRows, int numCols) +{ + printf("-------------- Calling test_pmFindImagePeaks on an %d-by-%d image. --------------\n", numRows, numCols); + // if ((numRows < 4) || (numCols < 4)) { + // printf("WARNING: Don't call this test with a smaller than 4-by-4 image.\n"); + // return(true); + // } + bool testStatus = true; + psImage *inData = psImageAlloc(numCols, numRows, PS_TYPE_F32); + psArray *outData = NULL; + + // + // Initialize test image. + // + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + inData->data.F32[i][j] = PS_SQR(i - numRows/2) + PS_SQR(j-numCols/2); + } + } + // + // Set corner and center pixels as peaks. + // + inData->data.F32[0][0] = PS_SQR(numRows) + PS_SQR(numCols); + inData->data.F32[0][numCols-1] = PS_SQR(numRows) + PS_SQR(numCols); + inData->data.F32[numRows-1][0] = PS_SQR(numRows) + PS_SQR(numCols); + inData->data.F32[numRows-1][numCols-1] = PS_SQR(numRows) + PS_SQR(numCols); + inData->data.F32[numRows/2][numCols/2] = PS_SQR(numRows) + PS_SQR(numCols); + + // + // Print image. + // + for (psS32 i = 0 ; i < numRows ; i++) { + for (psS32 j = 0 ; j < numCols ; j++) { + printf("(%.1f) ", inData->data.F32[i][j]); + } + printf("\n"); + } + + // + // Call pmFindImagePeaks() with a threshold of 0.0. + // + outData = pmFindImagePeaks(inData, 0.0); + + if (outData == NULL) { + printf("TEST ERROR: pmFindImagePeaks returned a NULL psList.\n"); + testStatus = false; + } else { + psS32 expectedNumPeaks; + if ((numRows == 1) && (numCols == 1)) { + expectedNumPeaks = 1; + } else if ((numRows == 1) || (numCols == 1)) { + expectedNumPeaks = 3; + } else { + expectedNumPeaks = 5; + } + if (outData->n != expectedNumPeaks) { + printf("TEST ERROR: pmFindImagePeaks found %ld peaks (should be %d)\n", outData->n, expectedNumPeaks); + testStatus = false; + } + + // HEY: verify + for (psS32 i = 0 ; i < outData->n ; i++) { + pmPeak *tmpPeak = (pmPeak *) outData->data[i]; + if (((tmpPeak->x == 0) && (tmpPeak->y == 0)) || + ((tmpPeak->x == 0) && (tmpPeak->y == numRows-1)) || + ((tmpPeak->x == numCols-1) && (tmpPeak->y == 0)) || + ((tmpPeak->x == numCols-1) && (tmpPeak->y == numRows-1))) { + if (!((tmpPeak->class & PM_PEAK_LONE) || (tmpPeak->class & PM_PEAK_EDGE))) { + printf("TEST ERROR: (0) peak at (%d, %d) (%f) ->class set improperly (0x%x).", + tmpPeak->y, tmpPeak->x, tmpPeak->counts, tmpPeak->class); + printf(" should be (0x%x or 0x%x).\n", PM_PEAK_LONE, PM_PEAK_EDGE); + testStatus = false; + } + } else if ((tmpPeak->x == numCols/2) && (tmpPeak->y == numRows/2)) { + if (tmpPeak->class != PM_PEAK_LONE) { + printf("TEST ERROR: (1) peak at (%d, %d) (%f) ->class set improperly (0x%x).\n", + tmpPeak->y, tmpPeak->x, tmpPeak->counts, tmpPeak->class); + printf(" should be (0x%x).\n", PM_PEAK_LONE); + testStatus = false; + } + } else { + printf("TEST ERROR: Peak at (%d, %d) (%f)\n", tmpPeak->y, tmpPeak->x, tmpPeak->counts); + testStatus = false; + } + } + } + + psFree(inData); + psFree(outData); + return(testStatus); +} + +int test02( void ) +{ + bool testStatus = true; + psArray *tmpArray = NULL; + psImage *tmpImageF64 = psImageAlloc(TST02_NUM_ROWS, TST02_NUM_COLS, PS_TYPE_F64); + psImage *tmpImageEmpty = psImageAlloc(0, 0, PS_TYPE_F32); + + psTraceSetLevel(".", 0); + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindImagePeaks with NULL psImage. Should generate error and return NULL.\n"); + tmpArray = pmFindImagePeaks(NULL, 0.0); + if (tmpArray != NULL) { + printf("TEST ERROR: pmFindImagePeaks() returned a non-NULL psImage.\n"); + testStatus = false; + psFree(tmpArray); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindImagePeaks with empty psImage. Should generate error and return NULL.\n"); + tmpArray = pmFindImagePeaks(tmpImageEmpty, 0.0); + if (tmpArray != NULL) { + printf("TEST ERROR: pmFindImagePeaks() returned a non-NULL psImage.\n"); + testStatus = false; + psFree(tmpArray); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmFindImagePeaks with PS_TYPE_F64 psImage. Should generate error and return NULL.\n"); + tmpArray = pmFindImagePeaks(tmpImageF64, 0.0); + if (tmpArray != NULL) { + printf("TEST ERROR: pmFindImagePeaks() returned a non-NULL psImage.\n"); + testStatus = false; + psFree(tmpArray); + } + printf("----------------------------------------------------------------------------------\n"); + // testStatus&= test_pmFindImagePeaks(1, 1); + // testStatus&= test_pmFindImagePeaks(2, 5); + // testStatus&= test_pmFindImagePeaks(5, 2); + // HEY: add code for small images + // testStatus&= test_pmFindImagePeaks(1, 1); + // testStatus&= test_pmFindImagePeaks(1, 8); + // testStatus&= test_pmFindImagePeaks(8, 1); + testStatus&= test_pmFindImagePeaks(TST02_NUM_ROWS, TST02_NUM_COLS); + testStatus&= test_pmFindImagePeaks(2*TST02_NUM_ROWS, TST02_NUM_COLS); + testStatus&= test_pmFindImagePeaks(TST02_NUM_ROWS, 2*TST02_NUM_COLS); + + + psFree(tmpImageF64); + psFree(tmpImageEmpty); + return(testStatus); +} + +/****************************************************************************** +test03(): We first test pmCullPeaks() with various NULL and unallowable input +parameters. Then we generate a list of peaks and test that pmCullPeaks() +removes them correctly. + *****************************************************************************/ +int test03( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(NUM_COLS, NUM_ROWS, PS_TYPE_F32); + psArray *outData = NULL; + + /* XXX: Modify for new pmCullPeaks() + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmCullPeaks with NULL psList. Should generate error and return NULL.\n"); + outData = pmCullPeaks(NULL, 0.0, NULL); + if (outData != NULL) { + printf("TEST ERROR: pmCulPeaks() returned a non-NULL psList.\n"); + testStatus = false; + } + */ + + // + // Set peaks in input image. All even-column and even-row pixels are + // set non-zero, all other pixels are set to zero. + // + psS32 numPeaksOrig = 0; + for (psS32 i = 0 ; i < NUM_ROWS ; i++) { + for (psS32 j = 0 ; j < NUM_COLS ; j++) { + if ((0 == i%2) && (0 == j%2)) { + imgData->data.F32[i][j] = (float) (i + 10); + numPeaksOrig++; + } else { + imgData->data.F32[i][j] = 0.0; + } + } + } + for (psS32 i = 0 ; i < NUM_ROWS ; i++) { + for (psS32 j = 0 ; j < NUM_COLS ; j++) { + printf("(%.1f) ", imgData->data.F32[i][j]); + } + printf("\n"); + } + printf("Set %d peaks\n", numPeaksOrig); + + // + // Call pmCullPeaks() with HUGE maxValue and NULL psRegion. Should not + // remove any peaks. + // + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmCullPeaks with large maxValue and NULL psRegion.\n"); + outData = pmFindImagePeaks(imgData, 0.0); + /* XXX: Modify for new pmCullPeaks + outData = pmCullPeaks(outData, PS_MAX_F32, NULL); + + if (outData == NULL) { + printf("TEST ERROR: pmCullPeaks() returned a non-NULL psList.\n"); + testStatus = false; + return(testStatus); + } + if (outData->n != numPeaksOrig) { + printf("TEST ERROR (0): pmCullPeaks incorrectly removed peaks\n"); + printf("The pmCullPeaks() output had %d peaks, should have had %d peaks.\n", outData->n, numPeaksOrig); + testStatus = false; + } + */ + psFree(outData); + + // + // Call pmCullPeaks() with TINY maxValue and NULL psRegion. Should + // remove all peaks. + // + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmCullPeaks with tiny maxValue and NULL psRegion.\n"); + outData = pmFindImagePeaks(imgData, 0.0); + printf("pmFindImagePeaks found %ld peaks\n", outData->n); + /* XXX: Modify for new pmCullPeaks + outData = pmCullPeaks(outData, 0.0, NULL); + + if (outData == NULL) { + printf("TEST ERROR: pmCullPeaks() returned a non-NULL psList.\n"); + testStatus = false; + return(testStatus); + } + if (outData->n != 0) { + printf("TEST ERROR (1): pmCullPeaks incorrectly removed peaks\n"); + printf("The pmCullPeaks() output had %d peaks, should have had %d peaks.\n", outData->n, 0); + testStatus = false; + } + psFree(outData); + */ + + // + // Call pmCullPeaks() with HUGE maxValue and disjoint psRegion. Should + // not remove any peaks. + // + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmCullPeaks with large maxValue and disjoint psRegion.\n"); + outData = pmFindImagePeaks(imgData, 0.0); + printf("pmFindImagePeaks found %ld peaks\n", outData->n); + psRegion tmpRegion = psRegionSet(10000.0, 20000.0, 10000.0, 20000.0); + + /* XXX: Modify for new pmCullPeaks + outData = pmCullPeaks(outData, PS_MAX_F32, tmpRegion); + + if (outData == NULL) { + printf("TEST ERROR: pmCullPeaks() returned a non-NULL psList.\n"); + testStatus = false; + return(testStatus); + } + if (outData->n != numPeaksOrig) { + printf("TEST ERROR (2): pmCullPeaks incorrectly removed peaks\n"); + printf("The pmCullPeaks() output had %d peaks, should have had %d peaks.\n", outData->n, numPeaksOrig); + testStatus = false; + } + */ + psFree(outData); + + // + // Call pmCullPeaks() with HUGE maxValue and non-disjoint psRegion. Should + // remove all peaks. + // + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmCullPeaks with large maxValue and non-disjoint psRegion.\n"); + outData = pmFindImagePeaks(imgData, 0.0); + printf("pmFindImagePeaks found %ld peaks\n", outData->n); + tmpRegion = psRegionSet(-PS_MAX_F32, PS_MAX_F32, -PS_MAX_F32, PS_MAX_F32); + /* XXX: Modify for new pmCullPeaks + outData = pmCullPeaks(outData, PS_MAX_F32, tmpRegion); + + if (outData == NULL) { + printf("TEST ERROR: pmCullPeaks() returned a non-NULL psList.\n"); + testStatus = false; + return(testStatus); + } + if (outData->n != 0) { + printf("TEST ERROR (3): pmCullPeaks incorrectly removed peaks\n"); + printf("The pmCullPeaks() output had %d peaks, should have had %d peaks.\n", outData->n, 0); + testStatus = false; + } + */ + psFree(outData); + + printf("----------------------------------------------------------------------------------\n"); + psFree(imgData); + return(testStatus); +} + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +#define TST04_NUM_ROWS 100 +#define TST04_NUM_COLS 100 +#define TST04_SKY 20.0 +#define TST04_INNER_RADIUS 3 +#define TST04_OUTER_RADIUS 5 +/****************************************************************************** +test04(): We first test pmSourceLocalSky() with various NULL and unallowable +input parameters. + +XXX: Should we produce tests with boundary numbers for the inner/outer radius? + +XXX: Call this with varying sizes for the image. + *****************************************************************************/ +int test04( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_F32); + psImageInit(imgData, TST04_SKY); + psImage *imgMask = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_U8); + psImageInit(imgMask, 0); + // psImage *imgMaskS8 = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_S8); + // psImageInit(imgMaskS8, 0); + psImage *imgDataF64 = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_F64); + psImageInit(imgDataF64, 0.0); + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST04_NUM_ROWS / 2), + (psF32) (TST04_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + pmSource *tmpSource = pmSourceAlloc(); + tmpSource->pixels = imgData; + tmpSource->mask = imgMask; + tmpSource->peak = tmpPeak; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceLocalSky with NULL tmpSource. Should generate error and return FALSE.\n"); + bool rc = pmSourceLocalSky(NULL, PS_STAT_SAMPLE_MEAN, 10.0); + if (rc != false) { + printf("TEST ERROR: pmSourceLocalSky() returned a non-FALSE pmSource.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceLocalSky with Radius<0.0. Should generate error and return FALSE.\n"); + rc = pmSourceLocalSky(tmpSource, PS_STAT_SAMPLE_MEAN, -10.0); + if (rc != false) { + printf("TEST ERROR: pmSourceLocalSky() returned a non-FALSE pmSource.\n"); + testStatus = false; + } + + // + // XXX: The following code should be a separate function, and we should call it + // with a variety of image sizes, peaks. + // + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceLocalSky with valid data.\n"); + tmpPeak->x = (psF32) (TST04_NUM_ROWS / 2); + tmpPeak->y = (psF32) (TST04_NUM_COLS / 2); + rc = pmSourceLocalSky(tmpSource, PS_STAT_SAMPLE_MEAN, 10.0); + + if (rc == false) { + printf("TEST ERROR: pmSourceLocalSky() returned a FALSE pmSource.\n"); + testStatus = false; + } else { + if (tmpSource->peak == NULL) { + printf("TEST ERROR: pmSourceLocalSky() returned a NULL pmSource->peak.\n"); + testStatus = false; + } else { + if (tmpSource->peak->x != tmpPeak->x) { + printf("TEST ERROR: pmSourceLocalSky() pmSource->peak->x was %d, should have been %d.\n", + tmpSource->peak->x, tmpPeak->x); + testStatus = false; + } + + if (tmpSource->peak->y != tmpPeak->y) { + printf("TEST ERROR: pmSourceLocalSky() pmSource->peak->y was %d, should have been %d.\n", + tmpSource->peak->y, tmpPeak->y); + testStatus = false; + } + + if (tmpSource->peak->counts != tmpPeak->counts) { + printf("TEST ERROR: pmSourceLocalSky() pmSource->peak->counts was %f, should have been %f.\n", + tmpSource->peak->counts, tmpPeak->counts); + testStatus = false; + } + + if (tmpSource->peak->class != tmpPeak->class) { + printf("TEST ERROR: pmSourceLocalSky() pmSource->peak->class was %d, should have been %d.\n", + tmpSource->peak->class, tmpPeak->class); + testStatus = false; + } + } + + if (tmpSource->moments == NULL) { + printf("TEST ERROR: pmSourceLocalSky() returned a NULL pmSource->moments.\n"); + testStatus = false; + } else { + if (tmpSource->moments->Sky != TST04_SKY) { + printf("TEST ERROR: pmSourceLocalSky() pmSource->moments->Sky was %f, should have been %f.\n", tmpSource->moments->Sky, TST04_SKY); + testStatus = false; + } + } + } + + printf("----------------------------------------------------------------------------------\n"); + psFree(tmpSource); + // psFree(imgData); + // psFree(imgDataF64); + // psFree(imgMask); + // psFree(imgMaskS8); + return(testStatus); +} + +#define TST05_NUM_ROWS 100 +#define TST05_NUM_COLS 100 +#define TST05_SKY 20.0 +#define TST05_INNER_RADIUS 3 +#define TST05_OUTER_RADIUS 5 +/****************************************************************************** +test05(): We first test pmSourceMoments() with various NULL and unallowable +input parameters. + +XXX: Should we produce tests with boundary numbers for the inner/outer radius? + +XXX: Call this with varying sizes for the image. + +XXX: The actual values of the moments are not tested. + *****************************************************************************/ +int test05( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_F32); + psImageInit(imgData, TST04_SKY); + psImage *imgMask = psImageAlloc(TST04_NUM_COLS, TST04_NUM_ROWS, PS_TYPE_U8); + psImageInit(imgMask, 0); + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST04_NUM_ROWS / 2), + (psF32) (TST04_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + pmSource *tmpSource = pmSourceAlloc(); + tmpSource->pixels = imgData; + tmpSource->mask = imgMask; + tmpSource->peak = tmpPeak; + psBool rc = pmSourceLocalSky(tmpSource, PS_STAT_SAMPLE_MEAN, 10.0); + + if (rc == false) { + printf("TEST ERROR: pmSourceLocalSky() returned a FALSE pmSource.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceMoments with NULL pmSource. Should generate error and return FALSE.\n"); + rc = pmSourceMoments(NULL, 10.0); + if (rc != false) { + printf("TEST ERROR: pmSourceMoments() returned TRUE.\n"); + testStatus = false; + } + // XXX: test with pmSource->peaks NULL + // XXX: test with pmSource->pixels NULL + // XXX: test with pmSource->mask NULL + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceMoments with radius < 0.0. Should generate error and return FALSE.\n"); + rc = pmSourceMoments(tmpSource, -10.0); + if (rc != false) { + printf("TEST ERROR: pmSourceMoments() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + psFree(tmpSource); + return(testStatus); + +} + +#define TST09_NUM_ROWS 70 +#define TST09_NUM_COLS 70 +#define TST09_SKY 5.0 +#define TST09_INNER_RADIUS 3 +#define TST09_OUTER_RADIUS 10 +#define LEVEL (TST09_SKY + 10.0) +/****************************************************************************** +test09(): We first test pmSourceContour() with various NULL and unallowable +input parameters. + +XXX: We don't verify the numbers. + *****************************************************************************/ +int test09( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST09_NUM_COLS, TST09_NUM_ROWS, PS_TYPE_F32); + psImageInit(imgData, TST09_SKY); + psImage *imgMask = psImageAlloc(TST09_NUM_COLS, TST09_NUM_ROWS, PS_TYPE_U8); + psImageInit(imgMask, 0); + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST09_NUM_ROWS / 2), + (psF32) (TST09_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + pmSource *tmpSource = pmSourceAlloc(); + tmpSource->pixels = imgData; + tmpSource->mask = imgMask; + tmpSource->peak = tmpPeak; + psBool rc = pmSourceLocalSky(tmpSource, PS_STAT_SAMPLE_MEAN, 10.0); + if (rc == false) { + printf("TEST ERROR: pmSourceLocalSky() returned a FALSE pmSource.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceContour with NULL pmSource . Should generate error, return FALSE.\n"); + rc = pmSourceContour(NULL, imgData, LEVEL, PS_CONTOUR_CRUDE); + if (rc != false) { + printf("TEST ERROR: pmSourceContour() returned TRUE.\n"); + testStatus = false; + psFree(rc); + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceContour with NULL psImage . Should generate error, return FALSE.\n"); + rc = pmSourceContour(tmpSource, NULL, LEVEL, PS_CONTOUR_CRUDE); + if (rc != FALSE) { + printf("TEST ERROR: pmSourceContour() returned TRUE.\n"); + testStatus = false; + psFree(rc); + } + + // + // XXX: pmSourceContour() has a problem with contour tops/bottoms. + // Must correct this. + // + if (1) { + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceContour with acceptable data.\n"); + printf("NOTE: must figure out the parameters for this test to be meaningful.\n"); + tmpSource->modelPSF->params->data.F32[0] = TST09_SKY; + tmpSource->modelPSF->params->data.F32[1] = 15.0; + tmpSource->modelPSF->params->data.F32[2] = (psF32) (TST09_NUM_ROWS / 2); + tmpSource->modelPSF->params->data.F32[3] = (psF32) (TST09_NUM_COLS / 2); + tmpSource->modelPSF->params->data.F32[4] = 2.0; + tmpSource->modelPSF->params->data.F32[5] = 2.0; + tmpSource->modelPSF->params->data.F32[6] = 2.0; + rc = pmSourceContour(tmpSource, imgData, LEVEL, PS_CONTOUR_CRUDE); + if (rc == false) { + printf("TEST ERROR: pmSourceContour() returned FALSE.\n"); + testStatus = false; + } else { + psFree(rc); + } + } + + psFree(tmpSource); + return(testStatus); +} + +#define TST15_NUM_ROWS 100 +#define TST15_NUM_COLS 100 +#define TST15_SKY 10.0 +#define TST15_INNER_RADIUS 3 +#define TST15_OUTER_RADIUS 5 +/****************************************************************************** +test15(): We first test pmSourceAddModel() with various NULL and unallowable +input parameters. + +XXX: We don't verify the numbers. + *****************************************************************************/ +/* +int test15( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST15_NUM_COLS, TST15_NUM_ROWS, PS_TYPE_F32); + psImageInit(imgData, TST15_SKY); + psImage *imgMask = psImageAlloc(TST15_NUM_COLS, TST15_NUM_ROWS, PS_TYPE_U8); + psImageInit(imgMask, 0); + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST15_NUM_ROWS / 2), + (psF32) (TST15_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + pmSource *tmpSource = pmSourceAlloc(); + tmpSource->pixels = imgData; + tmpSource->mask = imgMask; + tmpSource->peak = tmpPeak; + psBool rc = pmSourceLocalSky(tmpSource, PS_STAT_SAMPLE_MEAN, 10.0); + if (rc == false) { + printf("TEST ERROR: pmSourceLocalSky() returned a FALSE pmSource.\n"); + testStatus = false; + } + + + tmpSource->modelPSF = pmModelAlloc(PS_MODEL_GAUSS); + tmpSource->modelPSF->params->data.F32[0] = 5.0; + tmpSource->modelPSF->params->data.F32[1] = 70.0; + tmpSource->modelPSF->params->data.F32[2] = (psF32) (TST15_NUM_ROWS / 2); + tmpSource->modelPSF->params->data.F32[3] = (psF32) (TST15_NUM_COLS / 2); + tmpSource->modelPSF->params->data.F32[4] = 1.0; + tmpSource->modelPSF->params->data.F32[5] = 1.0; + tmpSource->modelPSF->params->data.F32[6] = 2.0; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceAddModel with NULL psImage. Should generate error, return FALSE.\n"); + rc = pmSourceAddModel(NULL, tmpSource, true); + if (rc == true) { + printf("TEST ERROR: pmSourceAddModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceAddModel with NULL psSrc. Should generate error, return FALSE.\n"); + rc = pmSourceAddModel(imgData, NULL, true); + if (rc == true) { + printf("TEST ERROR: pmSourceAddModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceAddModel with acceptable data.\n"); + rc = pmSourceAddModel(imgData, tmpSource, true); + if (rc != true) { + printf("TEST ERROR: pmSourceAddModel() returned FALSE.\n"); + testStatus = false; + } + + psFree(tmpSource); + psFree(imgData); + return(testStatus); +} +*/ + +#define TST16_NUM_ROWS 100 +#define TST16_NUM_COLS 100 +#define TST16_SKY 10.0 +#define TST16_INNER_RADIUS 3 +#define TST16_OUTER_RADIUS 5 +/****************************************************************************** +test16(): We first test pmSourceSubModel() with various NULL and unallowable +input parameters. + +XXX: We don't verify the numbers. + *****************************************************************************/ +/* +int test16( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST16_NUM_COLS, TST16_NUM_ROWS, PS_TYPE_F32); + for (psS32 i = 0 ; i < imgData->numRows; i++) { + for (psS32 j = 0 ; j < imgData->numCols; j++) { + imgData->data.F32[i][j] = TST16_SKY; + } + } + pmSource *tmpSource = NULL; + psBool rc = false; + + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST16_NUM_ROWS / 2), + (psF32) (TST16_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + + printf("Calling pmSourceLocalSky with valid data.\n"); + tmpPeak->x = (psF32) (TST16_NUM_ROWS / 2); + tmpPeak->y = (psF32) (TST16_NUM_COLS / 2); + tmpSource = pmSourceLocalSky(imgData, + tmpPeak, + PS_STAT_SAMPLE_MEAN, + (psF32) TST16_INNER_RADIUS, + (psF32) TST16_OUTER_RADIUS); + + if (tmpSource == NULL) { + printf("TEST ERROR: pmSourceLocalSky() returned a NULL pmSource.\n"); + testStatus = false; + } + + tmpSource->modelPSF = pmModelAlloc(PS_MODEL_GAUSS); + tmpSource->modelPSF->params->data.F32[0] = 5.0; + tmpSource->modelPSF->params->data.F32[1] = 70.0; + tmpSource->modelPSF->params->data.F32[2] = (psF32) (TST16_NUM_ROWS / 2); + tmpSource->modelPSF->params->data.F32[3] = (psF32) (TST16_NUM_COLS / 2); + tmpSource->modelPSF->params->data.F32[4] = 1.0; + tmpSource->modelPSF->params->data.F32[5] = 1.0; + tmpSource->modelPSF->params->data.F32[6] = 2.0; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceSubModel with NULL psImage. Should generate error, return FALSE.\n"); + rc = pmSourceSubModel(NULL, tmpSource, true); + if (rc == true) { + printf("TEST ERROR: pmSourceSubModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceSubModel with NULL psSrc. Should generate error, return FALSE.\n"); + rc = pmSourceSubModel(imgData, NULL, true); + if (rc == true) { + printf("TEST ERROR: pmSourceSubModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceSubModel with acceptable data.\n"); + rc = pmSourceSubModel(imgData, tmpSource, true); + if (rc != true) { + printf("TEST ERROR: pmSourceSubModel() returned FALSE.\n"); + testStatus = false; + } + + psFree(tmpSource); + psFree(imgData); + return(testStatus); +} +*/ + +#define TST20_NUM_ROWS 100 +#define TST20_NUM_COLS 100 +#define TST20_SKY 10.0 +#define TST20_INNER_RADIUS 3 +#define TST20_OUTER_RADIUS 5 +/****************************************************************************** +test20(): We first test pmSourceSubModel() with various NULL and unallowable +input parameters. + +XXX: We don't verify the numbers. + *****************************************************************************/ +/* +int test20( void ) +{ + bool testStatus = true; + psImage *imgData = psImageAlloc(TST20_NUM_COLS, TST20_NUM_ROWS, PS_TYPE_F32); + for (psS32 i = 0 ; i < imgData->numRows; i++) { + for (psS32 j = 0 ; j < imgData->numCols; j++) { + imgData->data.F32[i][j] = TST20_SKY; + } + } + pmSource *tmpSource = NULL; + psBool rc = false; + + pmPeak *tmpPeak = pmPeakAlloc((psF32) (TST20_NUM_ROWS / 2), + (psF32) (TST20_NUM_COLS / 2), + 200.0, + PM_PEAK_LONE); + + printf("Calling pmSourceLocalSky with valid data.\n"); + tmpPeak->x = (psF32) (TST20_NUM_ROWS / 2); + tmpPeak->y = (psF32) (TST20_NUM_COLS / 2); + tmpSource = pmSourceLocalSky(imgData, + tmpPeak, + PS_STAT_SAMPLE_MEAN, + (psF32) TST20_INNER_RADIUS, + (psF32) TST20_OUTER_RADIUS); + + if (tmpSource == NULL) { + printf("TEST ERROR: pmSourceLocalSky() returned a NULL pmSource.\n"); + testStatus = false; + } + + tmpSource->modelPSF = pmModelAlloc(PS_MODEL_GAUSS); + + + tmpSource->modelPSF->params->data.F32[0] = 5.0; + tmpSource->modelPSF->params->data.F32[1] = 70.0; + tmpSource->modelPSF->params->data.F32[2] = (psF32) (TST20_NUM_ROWS / 2); + tmpSource->modelPSF->params->data.F32[3] = (psF32) (TST20_NUM_COLS / 2); + tmpSource->modelPSF->params->data.F32[4] = 1.0; + tmpSource->modelPSF->params->data.F32[5] = 1.0; + tmpSource->modelPSF->params->data.F32[6] = 2.0; + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceFitModel with NULL psImage. Should generate error, return FALSE.\n"); + rc = pmSourceFitModel(tmpSource, NULL); + if (rc == true) { + printf("TEST ERROR: pmSourceFitModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceFitModel with NULL pmSource. Should generate error, return FALSE.\n"); + rc = pmSourceFitModel(NULL, imgData); + if (rc == true) { + printf("TEST ERROR: pmSourceFitModel() returned TRUE.\n"); + testStatus = false; + } + + printf("----------------------------------------------------------------------------------\n"); + printf("Calling pmSourceFitModel with acceptable data.\n"); + rc = pmSourceFitModel(tmpSource, imgData); + printf("pmSourceFitModel returned %d\n", rc); + + // XXX: Memory leaks are not being tested + psVector *junk = psVectorAlloc(10, PS_TYPE_F32); + junk->data.F32[0] = 0.0; + + psFree(tmpSource); + psFree(imgData); + return(testStatus); +} +*/ + Index: /branches/rel-1-1/psModules/test/pstap/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/pstap/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/.cvsignore (revision 12167) @@ -0,0 +1,2 @@ +Makefile +Makefile.in Index: /branches/rel-1-1/psModules/test/pstap/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/pstap/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/Makefile.am (revision 12167) @@ -0,0 +1,1 @@ +SUBDIRS = src Index: /branches/rel-1-1/psModules/test/pstap/src/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/pstap/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/src/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +libpstap.la +pstap.lo +.deps +.libs Index: /branches/rel-1-1/psModules/test/pstap/src/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/pstap/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/src/Makefile.am (revision 12167) @@ -0,0 +1,18 @@ + +AM_CPPFLAGS = \ + $(SRCINC) \ + -I$(top_srcdir)/test/tap/src \ + -I$(top_srcdir)/test/pstap/src \ + $(PSMODULES_CFLAGS) + +AM_LDFLAGS = \ + $(top_builddir)/src/libpsmodules.la \ + $(top_builddir)/test/tap/src/libtap.la \ + $(PSMODULES_LIBS) + +TEST_LTLIBS = libpstap.la +libpstap_la_SOURCES = pstap.c +noinst_HEADERS = pstap.h + +noinst_LTLIBRARIES = $(TEST_LTLIBS) + Index: /branches/rel-1-1/psModules/test/pstap/src/pstap.c =================================================================== --- /branches/rel-1-1/psModules/test/pstap/src/pstap.c (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/src/pstap.c (revision 12167) @@ -0,0 +1,6 @@ +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include Index: /branches/rel-1-1/psModules/test/pstap/src/pstap.h =================================================================== --- /branches/rel-1-1/psModules/test/pstap/src/pstap.h (revision 12167) +++ /branches/rel-1-1/psModules/test/pstap/src/pstap.h (revision 12167) @@ -0,0 +1,63 @@ +#include + +#include "tap.h" + +#define done() ok(psMemCheckLeaks(0, NULL, stdout, false) == 0, "Memory Leaks"); return exit_status() + + # define mem() ok(psMemCheckLeaks(psMemGetLastId(), NULL, stdout, false) == 0, "Memory Leaks") + + # define checkLeaks false + + # define checkMem() if(checkLeaks) mem() + + # ifdef __GNUC__ + + // write a comment which is counted as a test (and swallowed by prove) + # define note(A, ...) _gen_result(1, __func__, __FILE__, __LINE__, A, ## __VA_ARGS__); + +// use to test the value of a float +# define ok_float(VALUE,EXPECT,COMMENT, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < FLT_EPSILON), COMMENT, ## __VA_ARGS__); + +// use to test the value of a double +# define ok_double(VALUE,EXPECT,COMMENT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < DBL_EPSILON), COMMENT, ## __VA_ARGS__); + +// use to test the value of a float within a defined tolerance +# define ok_float_tol(VALUE,EXPECT,TOL,COMMENT, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < (TOL)), COMMENT, ## __VA_ARGS__); + +// use to test the value of a double within a defined tolerance +# define ok_double_tol(VALUE,EXPECT,TOL,COMMENT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < (TOL)), COMMENT, ## __VA_ARGS__); + +# define ok_str(VALUE,EXPECT,COMMENT, ...)\ +ok(strcmp(VALUE, EXPECT) == 0, COMMENT, ## __VA_ARGS__); + +#elif __STDC_VERSION__ >= 199901L /* __GNUC__ */ + +// write a comment which is counted as a test (and swallowed by prove) +# define note(A, ...) _gen_result(1, __func__, __FILE__, __LINE__, A, ...); + +// use to test the value of a float +# define ok_float(VALUE,EXPECT, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < FLT_EPSILON), __VA_ARGS__); + +// use to test the value of a double +# define ok_double(VALUE,EXPECT, ...)\ +ok((fabs((VALUE)-(EXPECT)) < DBL_EPSILON), __VA_ARGS__); + +// use to test the value of a float +# define ok_float_tol(VALUE,EXPECT,TOL, ...)\ +ok((fabsf((VALUE)-(EXPECT)) < (TOL)), __VA_ARGS__); + +// use to test the value of a double +# define ok_double_tol(VALUE,EXPECT,TOL, ...)\ +ok((fabs((VALUE)-(EXPECT)) < )(TOL)), __VA_ARGS__); + +# define ok_str(VALUE,EXPECT, ...)\ +ok(strcmp(VALUE, EXPECT) == 0, __VA_ARGS__); + +#else /* __STDC_VERSION__ */ +# error "Needs gcc or C99 compiler for variadic macros." +#endif /* __STDC_VERSION__ */ Index: /branches/rel-1-1/psModules/test/tap/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +.in +Makefile +Makefile.in +aclocal.m4 +autom4te.cache +config.log +config.status +configure +libtool +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/INSTALL =================================================================== --- /branches/rel-1-1/psModules/test/tap/INSTALL (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/INSTALL (revision 12167) @@ -0,0 +1,8 @@ +Quick Installation + + ./configure + make + make check + make install + +Run "configure --help" for additional options. Index: /branches/rel-1-1/psModules/test/tap/LICENSE =================================================================== --- /branches/rel-1-1/psModules/test/tap/LICENSE (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/LICENSE (revision 12167) @@ -0,0 +1,23 @@ +Copyright (c) 2004 Nik Clayton +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions +are met: +1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. +2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE +ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS +OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) +HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT +LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY +OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF +SUCH DAMAGE. Index: /branches/rel-1-1/psModules/test/tap/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/Makefile.am (revision 12167) @@ -0,0 +1,5 @@ +SUBDIRS = src +#SUBDIRS += tests + +prove: + prove -v -r Index: /branches/rel-1-1/psModules/test/tap/README =================================================================== --- /branches/rel-1-1/psModules/test/tap/README (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/README (revision 12167) @@ -0,0 +1,11 @@ +NAME + tap -- write tests that implement the Test Anything Protocol + +SYNOPSIS + #include + +DESCRIPTION + The tap library provides functions for writing test scripts that produce + output consistent with the Test Anything Protocol. A test harness that + parses this protocol can run these tests and produce useful reports indi- + cating their success or failure. Index: /branches/rel-1-1/psModules/test/tap/bootstrap.sh =================================================================== --- /branches/rel-1-1/psModules/test/tap/bootstrap.sh (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/bootstrap.sh (revision 12167) @@ -0,0 +1,8 @@ +#!/bin/sh + +set -x +aclocal19 -I /usr/local/share/aclocal || aclocal || exit 1 +autoheader259 || autoheader || exit 1 +libtoolize15 -c -f || libtoolize -c -f || glibtoolize -c -f || exit 1 +automake19 -a -c || automake -a -c || exit 1 +autoconf259 || autoconf || exit 1 Index: /branches/rel-1-1/psModules/test/tap/compile =================================================================== --- /branches/rel-1-1/psModules/test/tap/compile (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/compile (revision 12167) @@ -0,0 +1,142 @@ +#! /bin/sh +# Wrapper for compilers which do not understand `-c -o'. + +scriptversion=2004-10-12.08 + +# Copyright (C) 1999, 2000, 2003, 2004 Free Software Foundation, Inc. +# Written by Tom Tromey . +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation; either version 2, or (at your option) +# any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. + +# As a special exception to the GNU General Public License, if you +# distribute this file as part of a program that contains a +# configuration script generated by Autoconf, you may include it under +# the same distribution terms that you use for the rest of that program. + +# This file is maintained in Automake, please report +# bugs to or send patches to +# . + +case $1 in + '') + echo "$0: No command. Try \`$0 --help' for more information." 1>&2 + exit 1; + ;; + -h | --h*) + cat <<\EOF +Usage: compile [--help] [--version] PROGRAM [ARGS] + +Wrapper for compilers which do not understand `-c -o'. +Remove `-o dest.o' from ARGS, run PROGRAM with the remaining +arguments, and rename the output as expected. + +If you are trying to build a whole package this is not the +right script to run: please start by reading the file `INSTALL'. + +Report bugs to . +EOF + exit 0 + ;; + -v | --v*) + echo "compile $scriptversion" + exit 0 + ;; +esac + +ofile= +cfile= +eat= + +for arg +do + if test -n "$eat"; then + eat= + else + case $1 in + -o) + # configure might choose to run compile as `compile cc -o foo foo.c'. + # So we strip `-o arg' only if arg is an object. + eat=1 + case $2 in + *.o | *.obj) + ofile=$2 + ;; + *) + set x "$@" -o "$2" + shift + ;; + esac + ;; + *.c) + cfile=$1 + set x "$@" "$1" + shift + ;; + *) + set x "$@" "$1" + shift + ;; + esac + fi + shift +done + +if test -z "$ofile" || test -z "$cfile"; then + # If no `-o' option was seen then we might have been invoked from a + # pattern rule where we don't need one. That is ok -- this is a + # normal compilation that the losing compiler can handle. If no + # `.c' file was seen then we are probably linking. That is also + # ok. + exec "$@" +fi + +# Name of file we expect compiler to create. +cofile=`echo "$cfile" | sed -e 's|^.*/||' -e 's/\.c$/.o/'` + +# Create the lock directory. +# Note: use `[/.-]' here to ensure that we don't use the same name +# that we are using for the .o file. Also, base the name on the expected +# object file name, since that is what matters with a parallel build. +lockdir=`echo "$cofile" | sed -e 's|[/.-]|_|g'`.d +while true; do + if mkdir "$lockdir" >/dev/null 2>&1; then + break + fi + sleep 1 +done +# FIXME: race condition here if user kills between mkdir and trap. +trap "rmdir '$lockdir'; exit 1" 1 2 15 + +# Run the compile. +"$@" +ret=$? + +if test -f "$cofile"; then + mv "$cofile" "$ofile" +elif test -f "${cofile}bj"; then + mv "${cofile}bj" "$ofile" +fi + +rmdir "$lockdir" +exit $ret + +# Local Variables: +# mode: shell-script +# sh-indentation: 2 +# eval: (add-hook 'write-file-hooks 'time-stamp) +# time-stamp-start: "scriptversion=" +# time-stamp-format: "%:y-%02m-%02d.%02H" +# time-stamp-end: "$" +# End: Index: /branches/rel-1-1/psModules/test/tap/configure.in =================================================================== --- /branches/rel-1-1/psModules/test/tap/configure.in (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/configure.in (revision 12167) @@ -0,0 +1,44 @@ +AC_INIT(tap, 1.01) +AC_CONFIG_SRCDIR(src/tap.c) +AM_INIT_AUTOMAKE([foreign]) +AC_CONFIG_HEADERS([src/config.h]) +AC_GNU_SOURCE +AC_PROG_CC +AC_PROG_LIBTOOL +AC_PROG_INSTALL + +# Checks for libraries +case "$host" in + *-*-*freebsd4*) + LDFLAGS="$LDFLAGS -pthread" + HAVE_LIBPTHREAD=1 + ;; + *) + AC_CHECK_LIB(pthread, main) + ;; +esac + +dnl build tests at the same time as the source code +AC_ARG_ENABLE(tests, + [AS_HELP_STRING(--enable-tests,build tests at same time as source)], + [AC_MSG_RESULT(test building enabled) + tests=true], + [tests=false]) +AM_CONDITIONAL(BUILD_TESTS, test x$tests = xtrue) + +# Checks for header files +AC_HEADER_STDC +AC_CHECK_HEADERS([stdlib.h]) +AC_CHECK_HEADERS([pthread.h]) + +# Checks for typedefs, structures, and compiler characteristics. +AC_C_CONST + +# Checks for library functions. +AC_FUNC_VPRINTF +AC_CHECK_FUNCS([atexit]) + +AC_CONFIG_FILES([Makefile + src/Makefile + ]) +AC_OUTPUT Index: /branches/rel-1-1/psModules/test/tap/src/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/src/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/src/.cvsignore (revision 12167) @@ -0,0 +1,13 @@ +.deps +.libs +Makefile +Makefile.in +libtap.la +tap.lo +config.h +config.h.in +stamp-h1 +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/src/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/src/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/src/Makefile.am (revision 12167) @@ -0,0 +1,8 @@ +TEST_LTLIBS = libtap.la +libtap_la_SOURCES = tap.c tap.h +noinst_HEADERS = tap.h +noinst_LTLIBRARIES = $(TEST_LTLIBS) + +#man_MANS = tap.3 +EXTRA_DIST = $(man_MANS) + Index: /branches/rel-1-1/psModules/test/tap/src/tap.3 =================================================================== --- /branches/rel-1-1/psModules/test/tap/src/tap.3 (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/src/tap.3 (revision 12167) @@ -0,0 +1,380 @@ +.Dd December 20, 2004 +.Os +.Dt TAP 3 +.Sh NAME +.Nm tap +.Nd write tests that implement the Test Anything Protocol +.Sh SYNOPSIS +.In tap.h +.Sh DESCRIPTION +The +.Nm +library provides functions for writing test scripts that produce output +consistent with the Test Anything Protocol. A test harness that parses +this protocol can run these tests and produce useful reports indicating +their success or failure. +.Ss PRINTF STRINGS +In the descriptions that follow, for any function that takes as the +last two parameters +.Dq Fa char * , Fa ... +it can be assumed that the +.Fa char * +is a +.Fn printf +-like format string, and the optional arguments are values to be placed +in that string. +.Ss TEST PLANS +.Bl -tag -width indent +.It Xo +.Ft int +.Fn plan_tests "unsigned int" +.Xc +.It Xo +.Ft int +.Fn plan_no_plan "void" +.Xc +.It Xo +.Ft int +.Fn plan_skip_all "char *" "..." +.Xc +.El +.Pp +You must first specify a test plan. This indicates how many tests you +intend to run, and allows the test harness to notice if any tests were +missed, or if the test program exited prematurely. +.Pp +To do this, use +.Fn plan_tests , +which returns the number of planned tests. The function will cause +your program to exit prematurely if you specify 0 tests. +.Pp +In some situations you may not know how many tests you will be running, or +you are developing your test program, and do not want to update the +.Fn plan_tests +parameter every time you make a change. For those situations use +.Fn plan_no_plan . +It returns 1, and indicates to the test harness that an indeterminate number +of tests will be run. +.Pp +Both +.Fn plan_tests +and +.Fn plan_no_plan +will cause your test program to exit prematurely with a diagnostic +message if they are called more than once. +.Pp +If your test program detects at run time that some required functionality +is missing (for example, it relies on a database connection which is not +present, or a particular configuration option that has not been included +in the running kernel) use +.Fn plan_skip_all , +passing as parameters a string to display indicating the reason for skipping +the tests. +.Ss SIMPLE TESTS +.Bl -tag -width indent +.It Xo +.Ft unsigned int +.Fn ok "expression" "char *" "..." +.Xc +.It Xo +.Ft unsigned int +.Fn ok1 "expression" +.Xc +.It Xo +.Ft unsigned int +.Fn pass "char *" "..." +.Xc +.It Xo +.Ft unsigned int +.Fn fail "char *" "..." +.Xc +.El +.Pp +Tests are implemented as expressions checked by calls to the +.Fn ok +and +.Fn ok1 +macros. In both cases +.Fa expression +should evaluate to true if the test succeeded. +.Pp +.Fn ok +allows you to specify a name, or comment, describing the test which will +be included in the output. +.Fn ok1 +is for those times when the expression to be tested is self +explanatory and does not need an associated comment. In those cases +the test expression becomes the comment. +.Pp +These four calls are equivalent: +.Bd -literal -offset indent +int i = 5; + +ok(i == 5, "i equals 5"); /* Overly verbose */ +ok(i == 5, "i equals %d", i); /* Just to demonstrate printf-like + behaviour of the test name */ +ok(i == 5, "i == 5"); /* Needless repetition */ +ok1(i == 5); /* Just right */ +.Ed +.Pp +It is good practice to ensure that the test name describes the meaning +behind the test rather than what you are testing. Viz +.Bd -literal -offset indent +ok(db != NULL, "db is not NULL"); /* Not bad, but */ +ok(db != NULL, "Database conn. succeeded"); /* this is better */ +.Ed +.Pp +.Fn ok +and +.Fn ok1 +return 1 if the expression evaluated to true, and 0 if it evaluated to +false. This lets you chain calls from +.Fn ok +to +.Fn diag +to only produce diagnostic output if the test failed. For example, this +code will include diagnostic information about why the database connection +failed, but only if the test failed. +.Bd -literal -offset indent +ok(db != NULL, "Database conn. succeeded") || + diag("Database error code: %d", dberrno); +.Ed +.Pp +You also have +.Fn pass +and +.Fn fail . +From the Test::More documentation: +.Bd -literal -offset indent +Sometimes you just want to say that the tests have passed. +Usually the case is you've got some complicated condition +that is difficult to wedge into an ok(). In this case, +you can simply use pass() (to declare the test ok) or fail +(for not ok). + +Use these very, very, very sparingly. +.Ed +.Pp +These are synonyms for ok(1, ...) and ok(0, ...). +.Ss SKIPPING TESTS +.Bl -tag -width indent +.It Xo +.Ft int +.Fn skip "unsigned int" "char *" "..." +.Xc +.It Xo +.Fn skip_start "expression" "unsigned int" "char *" "..." +.Xc +.It Xo +.Fn skip_end +.Xc +.El +.Pp +Sets of tests can be skipped. Ordinarily you would do this because +the test can't be run in this particular testing environment. +.Pp +For example, suppose some tests should be run as root. If the test is +not being run as root then the tests should be skipped. In this +implementation, skipped tests are flagged as being ok, with a special +message indicating that they were skipped. It is your responsibility +to ensure that the number of tests skipped (the first parameter to +.Fn skip ) +is correct for the number of tests to skip. +.Pp +One way of implementing this is with a +.Dq do { } while(0); +loop, or an +.Dq if( ) { } else { } +construct, to ensure that there are no additional side effects from the +skipped tests. +.Bd -literal -offset indent +if(getuid() != 0) { + skip(1, "because test only works as root"); +} else { + ok(do_something_as_root() == 0, "Did something as root"); +} +.Ed +.Pp +Two macros are provided to assist with this. The previous example could +be re-written as follows. +.Bd -literal -offset indent +skip_start(getuid() != 0, 1, "because test only works as root"); + +ok(do_something_as_root() == 0, "Did something as root"); + +skip_end(); +.Ed +.Ss MARKING TESTS AS Dq TODO +.Bl -tag -width indent +.It Xo +.Ft void +.Fn todo_start "char *" "..." +.Xc +.It Xo +.Ft void +.Fn todo_end "void" +.Xc +.El +.Pp +Sets of tests can be flagged as being +.Dq TODO . +These are tests that you expect to fail, probably because you haven't +fixed a bug, or finished a new feature yet. These tests will still be +run, but with additional output that indicates that they are expected +to fail. Should a test start to succeed unexpectedly, tools like +.Xr prove 1 +will indicate this, and you can move the test out of the todo +block. This is much more useful than simply commenting out (or +.Dq #ifdef 0 ... #endif ) +the tests. +.Bd -literal -offset indent +todo_start("dwim() not returning true yet"); + +ok(dwim(), "Did what the user wanted"); + +todo_end(); +.Ed +.Pp +Should +.Fn dwim +ever start succeeding you will know about it as soon as you run the +tests. Note that +.Em unlike +the +.Fn skip_* +family, additional code between +.Fn todo_start +and +.Fn todo_end +.Em is +executed. +.Ss SKIP vs. TODO +From the Test::More documentation; +.Bd -literal -offset indent +If it's something the user might not be able to do, use SKIP. +This includes optional modules that aren't installed, running +under an OS that doesn't have some feature (like fork() or +symlinks), or maybe you need an Internet connection and one +isn't available. + +If it's something the programmer hasn't done yet, use TODO. +This is for any code you haven't written yet, or bugs you have +yet to fix, but want to put tests in your testing script +(always a good idea). +.Ed +.Ss DIAGNOSTIC OUTPUT +.Bl -tag -width indent +.It Xo +.Fr unsigned int +.Fn diag "char *" "..." +.Xc +.El +.Pp +If your tests need to produce diagnostic output, use +.Fn diag . +It ensures that the output will not be considered by the TAP test harness. +.Fn diag +adds the necessary trailing +.Dq \en +for you. +.Bd -literal -offset indent +diag("Expected return code 0, got return code %d", rcode); +.Ed +.Pp +.Fn diag +always returns 0. +.Ss EXIT STATUS +.Bl -tag -width indent +.It Xo +.Fr int +.Fn exit_status void +.Xc +.El +.Pp +For maximum compatability your test program should return a particular +exit code. This is calculated by +.Fn exit_status +so it is sufficient to always return from +.Fn main +with either +.Dq return exit_status(); +or +.Dq exit(exit_status()); +as appropriate. +.Sh ENVIRONMENT +The following environment variables affect +.Nm . +.Bl -tag -width indent +.It Ev HARNESS_ACTIVE +Causes an extra +.Dq \en +to be printed before any diagnostic failure output generated by +.Nm . +This variable is normally set if tests are being run under Perl's +Test::Harness. +.El +.Sh EXAMPLES +The +.Pa tests +directory in the source distribution contains numerous tests of +.Nm +functionality, written using +.Nm . +Examine them for examples of how to construct test suites. +.Sh COMPATABILITY +.Nm +strives to be compatible with the Perl Test::More and Test::Harness +modules. The test suite verifies that +.Nm +is bug-for-bug compatible with their behaviour. This is why some +functions which would more naturally return nothing return constant +values. +.Pp +If the +.Lb libpthread +is found at compile time, +.Nm +.Em should +be thread safe. Indications to the contrary (and test cases that expose +incorrect behaviour) are very welcome. +.Sh SEE ALSO +.Xr Test::More 1 , +.Xr Test::Harness 1 , +.Xr prove 1 +.Sh STANDARDS +.Nm +requires a +.St -isoC-99 +compiler. Some of the +.Nm +functionality is implemented as variadic macros, and that functionality +was not formally codified until C99. Patches to use +.Nm +with earlier compilers that have their own implementation of variadic +macros will be gratefully received. +.Sh HISTORY +.Nm +was written to help improve the quality and coverage of the FreeBSD +regression test suite, and released in the hope that others find it +a useful tool to help improve the quality of their code. +.Sh AUTHORS +.An "Nik Clayton" Aq nik@ngo.org.uk , +.Aq nik@FreeBSD.org +.Pp +.Nm +would not exist without the efforts of +.An "Michael G Schwern" Aq schqern@pobox.com , +.An "Andy Lester" Aq andy@petdance.com , +and the countless others who have worked on the Perl QA programme. +.Sh BUGS +Ideally, running the tests would have no side effects on the behaviour +of the application you are testing. However, it is not always possible +to avoid them. The following side effects of using +.Nm +are known. +.Bl -bullet -offset indent +.It +stdout is set to unbuffered mode after calling any of the +.Fn plan_* +functions. +.El Index: /branches/rel-1-1/psModules/test/tap/src/tap.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/src/tap.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/src/tap.c (revision 12167) @@ -0,0 +1,430 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#ifdef HAVE_CONFIG_H +#include +#endif + +#include +#include +#include +#include + +#include "tap.h" + +static int no_plan = 0; +static int skip_all = 0; +static int have_plan = 0; +static unsigned int test_count = 0; /* Number of tests that have been run */ +static unsigned int e_tests = 0; /* Expected number of tests to run */ +static unsigned int failures = 0; /* Number of tests that failed */ +static char *todo_msg = NULL; +static char *todo_msg_fixed = "libtap malloc issue"; +static int todo = 0; +static int test_died = 0; + +/* Encapsulate the pthread code in a conditional. In the absence of + libpthread the code does nothing */ +#ifdef HAVE_LIBPTHREAD +#include +static pthread_mutex_t M = PTHREAD_MUTEX_INITIALIZER; +# define LOCK pthread_mutex_lock(&M); +# define UNLOCK pthread_mutex_unlock(&M); +#else +# define LOCK +# define UNLOCK +#endif + +static void _expected_tests(unsigned int); +static void _tap_init(void); +static void _cleanup(void); + +/* + * Generate a test result. + * + * ok -- boolean, indicates whether or not the test passed. + * test_name -- the name of the test, may be NULL + * test_comment -- a comment to print afterwards, may be NULL + */ +unsigned int +_gen_result(int ok, const char *func, char *file, unsigned int line, + char *test_name, ...) +{ + va_list ap; + char *local_test_name = NULL; + char *c; + int name_is_digits; + + LOCK; + + test_count++; + + /* Start by taking the test name and performing any printf() + expansions on it */ + if(test_name != NULL) { + va_start(ap, test_name); + vasprintf(&local_test_name, test_name, ap); + va_end(ap); + + /* Make sure the test name contains more than digits + and spaces. Emit an error message and exit if it + does */ + if(local_test_name) { + name_is_digits = 1; + for(c = local_test_name; *c != '\0'; c++) { + if(!isdigit(*c) && !isspace(*c)) { + name_is_digits = 0; + break; + } + } + + if(name_is_digits) { + diag(" You named your test '%s'. You shouldn't use numbers for your test names.", local_test_name); + diag(" Very confusing."); + } + } + } + + if(!ok) { + printf("not "); + failures++; + } + + printf("ok %d", test_count); + + if(test_name != NULL) { + printf(" - "); + + /* Print the test name, escaping any '#' characters it + might contain */ + if(local_test_name != NULL) { + flockfile(stdout); + for(c = local_test_name; *c != '\0'; c++) { + if(*c == '#') + fputc('\\', stdout); + fputc((int)*c, stdout); + } + funlockfile(stdout); + } else { /* vasprintf() failed, use a fixed message */ + printf("%s", todo_msg_fixed); + } + } + + /* If we're in a todo_start() block then flag the test as being + TODO. todo_msg should contain the message to print at this + point. If it's NULL then asprintf() failed, and we should + use the fixed message. + + This is not counted as a failure, so decrement the counter if + the test failed. */ + if(todo) { + printf(" # TODO %s", todo_msg ? todo_msg : todo_msg_fixed); + if(!ok) + failures--; + } + + printf("\n"); + + if(!ok) { + if(getenv("HARNESS_ACTIVE") != NULL) + fputs("\n", stderr); + + diag(" Failed %stest (%s:%s() at line %d)", + todo ? "(TODO) " : "", file, func, line); + } + free(local_test_name); + + UNLOCK; + + /* We only care (when testing) that ok is positive, but here we + specifically only want to return 1 or 0 */ + return ok ? 1 : 0; +} + +/* + * Initialise the TAP library. Will only do so once, however many times it's + * called. + */ +void +_tap_init(void) +{ + static int run_once = 0; + + if(!run_once) { + atexit(_cleanup); + + /* stdout needs to be unbuffered so that the output appears + in the same place relative to stderr output as it does + with Test::Harness */ + setbuf(stdout, 0); + run_once = 1; + } +} + +/* + * Note that there's no plan. + */ +int +plan_no_plan(void) +{ + + LOCK; + + _tap_init(); + + if(have_plan != 0) { + fprintf(stderr, "You tried to plan twice!\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + have_plan = 1; + no_plan = 1; + + UNLOCK; + + return 1; +} + +/* + * Note that the plan is to skip all tests + */ +int +plan_skip_all(char *reason) +{ + + LOCK; + + _tap_init(); + + skip_all = 1; + + printf("1..0"); + + if(reason != NULL) + printf(" # Skip %s", reason); + + printf("\n"); + + UNLOCK; + + exit(0); +} + +/* + * Note the number of tests that will be run. + */ +int +plan_tests(unsigned int tests) +{ + + LOCK; + + _tap_init(); + + if(have_plan != 0) { + fprintf(stderr, "You tried to plan twice!\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + if(tests == 0) { + fprintf(stderr, "You said to run 0 tests! You've got to run something.\n"); + test_died = 1; + UNLOCK; + exit(255); + } + + have_plan = 1; + + _expected_tests(tests); + + UNLOCK; + + return e_tests; +} + +unsigned int +diag(char *fmt, ...) +{ + va_list ap; + + fputs("# ", stderr); + + va_start(ap, fmt); + vfprintf(stderr, fmt, ap); + va_end(ap); + + fputs("\n", stderr); + + return 0; +} + +void +_expected_tests(unsigned int tests) +{ + + printf("1..%d\n", tests); + e_tests = tests; +} + +int +skip(unsigned int n, char *fmt, ...) +{ + va_list ap; + char *skip_msg; + + LOCK; + + va_start(ap, fmt); + asprintf(&skip_msg, fmt, ap); + va_end(ap); + + while(n-- > 0) { + test_count++; + printf("ok %d # skip %s\n", test_count, + skip_msg != NULL ? + skip_msg : "libtap():malloc() failed"); + } + + free(skip_msg); + + UNLOCK; + + return 1; +} + +void +todo_start(char *fmt, ...) +{ + va_list ap; + + LOCK; + + va_start(ap, fmt); + vasprintf(&todo_msg, fmt, ap); + va_end(ap); + + todo = 1; + + UNLOCK; +} + +void +todo_end(void) +{ + + LOCK; + + todo = 0; + free(todo_msg); + + UNLOCK; +} + +int +exit_status(void) +{ + int r; + + LOCK; + + /* If there's no plan, just return the number of failures */ + if(no_plan || !have_plan) { + UNLOCK; + return failures; + } + + /* Ran too many tests? Return the number of tests that were run + that shouldn't have been */ + if(e_tests < test_count) { + r = test_count - e_tests; + UNLOCK; + return r; + } + + /* Return the number of tests that failed + the number of tests + that weren't run */ + r = failures + e_tests - test_count; + UNLOCK; + + return r; +} + +/* + * Cleanup at the end of the run, produce any final output that might be + * required. + */ +void +_cleanup(void) +{ + + LOCK; + + /* If plan_no_plan() wasn't called, and we don't have a plan, + and we're not skipping everything, then something happened + before we could produce any output */ + if(!no_plan && !have_plan && !skip_all) { + diag("Looks like your test died before it could output anything."); + UNLOCK; + return; + } + + if(test_died) { + diag("Looks like your test died just after %d.", test_count); + UNLOCK; + return; + } + + + /* No plan provided, but now we know how many tests were run, and can + print the header at the end */ + if(!skip_all && (no_plan || !have_plan)) { + printf("1..%d\n", test_count); + } + + if((have_plan && !no_plan) && e_tests < test_count) { + diag("Looks like you planned %d %s but ran %d extra.", + e_tests, e_tests == 1 ? "test" : "tests", test_count - e_tests); + UNLOCK; + return; + } + + if((have_plan || !no_plan) && e_tests > test_count) { + diag("Looks like you planned %d %s but only ran %d.", + e_tests, e_tests == 1 ? "test" : "tests", test_count); + UNLOCK; + return; + } + + if(failures) + diag("Looks like you failed %d %s of %d.", + failures, failures == 1 ? "test" : "tests", test_count); + + UNLOCK; +} Index: /branches/rel-1-1/psModules/test/tap/src/tap.h =================================================================== --- /branches/rel-1-1/psModules/test/tap/src/tap.h (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/src/tap.h (revision 12167) @@ -0,0 +1,89 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +/* '## __VA_ARGS__' is a gcc'ism. C99 doesn't allow the token pasting + and requires the caller to add the final comma if they've ommitted + the optional arguments */ +#ifdef __GNUC__ +# define ok(e, test, ...) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, \ + test, ## __VA_ARGS__) : \ + _gen_result(0, __func__, __FILE__, __LINE__, \ + test, ## __VA_ARGS__)) + +# define ok1(e) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, "%s", #e) : \ + _gen_result(0, __func__, __FILE__, __LINE__, "%s", #e)) + +# define pass(test, ...) ok(1, test, ## __VA_ARGS__); +# define fail(test, ...) ok(0, test, ## __VA_ARGS__); + +# define skip_start(test, n, fmt, ...) \ +do { \ + if((test)) { \ + skip(n, fmt, ## __VA_ARGS__); \ + continue; \ + } + #elif __STDC_VERSION__ >= 199901L /* __GNUC__ */ + # define ok(e, ...) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, \ + __VA_ARGS__) : \ + _gen_result(0, __func__, __FILE__, __LINE__, \ + __VA_ARGS__)) + + # define ok1(e) ((e) ? \ + _gen_result(1, __func__, __FILE__, __LINE__, "%s", #e) : \ + _gen_result(0, __func__, __FILE__, __LINE__, "%s", #e)) + + # define pass(...) ok(1, __VA_ARGS__); + # define fail(...) ok(0, __VA_ARGS__); + + # define skip_start(test, n, ...) \ + do { \ + if((test)) { \ + skip(n, __VA_ARGS__); \ + continue; \ + } + #else /* __STDC_VERSION__ */ + # error "Needs gcc or C99 compiler for variadic macros." + #endif /* __STDC_VERSION__ */ + + #define skip_end() } while(0); + + unsigned int _gen_result(int, const char *, char *, unsigned int, char *, ...); + + int plan_no_plan(void); + int plan_skip_all(char *); + int plan_tests(unsigned int); + + unsigned int diag(char *, ...); + + int skip(unsigned int, char *, ...); + + void todo_start(char *, ...); + void todo_end(void); + + int exit_status(void); Index: /branches/rel-1-1/psModules/test/tap/tests/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +SUBDIRS= diag +SUBDIRS+= fail +SUBDIRS+= ok +SUBDIRS+= pass +SUBDIRS+= plan +SUBDIRS+= skip +SUBDIRS+= todo Index: /branches/rel-1-1/psModules/test/tap/tests/README =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/README (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/README (revision 12167) @@ -0,0 +1,12 @@ +Most of the tests follow the same pattern. + + * test.pl that uses Test::More, and demonstrates whatever functionality + that we're trying to test. This is the reference code. + + * test.c, which tests the libtap reimplementation of the same functionality. + + * test.t, which compiles the .c program, runs both test scripts, and then + diffs their output to make sure it's identical. + + Right now, test.t is identical in every directory. This sucks somewhat. + It should either be a symlink to a common script Index: /branches/rel-1-1/psModules/test/tap/tests/diag/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/diag/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/diag/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/diag/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/diag/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/diag/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/diag/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/diag/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/diag/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + plan_tests(2); + + rc = diag("A diagnostic message"); + diag("Returned: %d", rc); + + /* Make sure the failure is passed through */ + ok(1, "test 1") || diag("ok() failed, and shouldn't"); + ok(0, "test 2") || diag("ok() passed, and shouldn't"); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/diag/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/diag/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/diag/test.pl (revision 12167) @@ -0,0 +1,16 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +plan tests => 2; + +$rc = diag("A diagnostic message"); +diag("Returned: $rc"); + +ok(1, 'test 1') or diag "ok() failed, and shouldn't"; +ok(0, 'test 2') or diag "ok() passed, and shouldn't"; Index: /branches/rel-1-1/psModules/test/tap/tests/diag/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/diag/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/diag/test.t (revision 12167) @@ -0,0 +1,67 @@ +#!/bin/sh + +echo '1..7' + +perl $srcdir/test.pl 2>/dev/null >test.pl.out +perlstatus=$? + +./test > test.c.out 2>&1 +cstatus=$? + +if grep "^# A diagnostic message$" test.c.out > /dev/null ; then + echo "ok 1 - found a diagnostic message" +else + echo "not ok 1 - found a diagnostic message" + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out > /dev/null ; then + echo "ok 2 - diag() expected return value" +else + echo "not ok 2 - diag() expected return value" + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 43)$" test.c.out > /dev/null ; then + echo "ok 3 - 'failed test at line' diag" +else + echo "not ok 3 - 'failed test at line' diag" + retval=1 +fi + +if grep "^# ok() passed, and shouldn't$" test.c.out > /dev/null ; then + echo "ok 4 - expected diag" +else + echo "ok 4 - expected diag" + retval=1 +fi + +if grep "^# Looks like you failed 1 test of 2.$" test.c.out > /dev/null ; then + echo "ok 5 - failed 1 test" + else + echo "ok 5 - failed 1 test" + retval=1 +fi + +sed -e '/^#/D' test.c.out > tmp +mv tmp test.c.out + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 6 - TAP output is identical' +else + retval=1 + echo 'not ok 6 - TAP output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 7 - status code' +else + retval=1 + echo 'not ok 7 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/fail/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/fail/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/fail/.cvsignore (revision 12167) @@ -0,0 +1,15 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/fail/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/fail/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/fail/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/fail/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/fail/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/fail/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(2); + diag("Returned: %d", rc); + + rc = fail("test to fail"); + diag("Returned: %d", rc); + + rc = fail("test to fail %s", "with extra string"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/fail/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/fail/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/fail/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 2; +diag("Returned: " . sprintf('%d', $rc)); + +$rc = fail('test to fail'); +diag("Returned: $rc"); + +$rc = fail('test to fail with extra string'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/fail/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/fail/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/fail/test.t (revision 12167) @@ -0,0 +1,74 @@ +#!/bin/sh + +echo '1..8' + +perl $srcdir/test.pl 2>/dev/null > test.pl.out +perlstatus=$? + +./test > test.c.out 2>&1 +cstatus=$? + +if grep "^# Returned: 2$" test.c.out >/dev/null ; then + echo "ok 1 - expected return value"; +else + echo "not ok 1 - expected return value"; + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 39)$" test.c.out >/dev/null ; then + echo "ok 2 - failed expected test"; +else + echo "not ok 2 - failed expected test"; + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out >/dev/null ; then + echo "ok 3 - expected return value"; +else + echo "not ok 3 - expected return value"; + retval=1 +fi + +if grep "^# Failed test (.*test.c:main() at line 42)$" test.c.out >/dev/null ; then + echo "ok 4 - failed expected test"; +else + echo "not ok 4 - failed expected test"; + retval=1 +fi + +if grep "^# Returned: 0$" test.c.out >/dev/null ; then + echo "ok 5 - expected return value"; +else + echo "not ok 5 - expected return value"; + retval=1 +fi + +if grep "^# Looks like you failed 2 tests of 2.$" test.c.out >/dev/null ; then + echo "ok 6 - expected return value"; +else + echo "not ok 6 - expected return value"; + retval=1 +fi + +sed -e '/^#/D' test.c.out > tmp +mv tmp test.c.out + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 7 - output is identical' +else + retval=1 + echo 'not ok 7 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 8 - status code' +else + retval=1 + echo 'not ok 8 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/ok/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/Makefile.am (revision 12167) @@ -0,0 +1,3 @@ +SUBDIRS = ok +SUBDIRS += ok-hash +SUBDIRS += ok-numeric Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.c (revision 12167) @@ -0,0 +1,52 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(4); + diag("Returned: %d", rc); + + rc = ok(1, "Test with no hash"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with one # hash"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with # two # hashes"); + diag("Returned: %d", rc); + + rc = ok(1, "Test with ## back to back hashes"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.pl (revision 12167) @@ -0,0 +1,24 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 4; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1, 'Test with no hash'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with one # hash'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with # two # hashes'); +diag("Returned: $rc"); + +$rc = ok(1, 'Test with ## back to back hashes'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-hash/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(3); + diag("Returned: %d", rc); + + rc = ok(1, "First test"); + diag("Returned: %d", rc); + + rc = ok(1, "1"); + diag("Returned: %d", rc); + + rc = ok(1, "Third test"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.pl (revision 12167) @@ -0,0 +1,21 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 3; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1, 'First test'); +diag("Returned: $rc"); + +$rc = ok(1, '1'); +diag("Returned: $rc"); + +$rc = ok(1, 'Third test'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok-numeric/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.c (revision 12167) @@ -0,0 +1,55 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals %d", 1); + diag("Returned: %d", rc); + + rc = ok1(1 == 1); + diag("Returned: %d", rc); + + rc = ok(1 == 2, "1 equals 2"); + diag("Returned: %d", rc); + + rc = ok1(1 == 2); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.pl (revision 12167) @@ -0,0 +1,27 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +$rc = ok(1 == 1, '1 equals 1'); # Used for %d testing in test.c +diag("Returned: $rc"); + +$rc = ok(1 == 1, '1 == 1'); # Test ok1() passes when it should +diag("Returned: $rc"); + +$rc = ok(1 == 2, '1 equals 2'); # Test ok() fails when it should +diag("Returned: $rc"); + +$rc = ok(1 == 2, '1 == 2'); # Test ok1() fails when it should +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/ok/ok/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/pass/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/pass/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/pass/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/pass/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/pass/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/pass/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/pass/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/pass/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/pass/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(2); + diag("Returned: %d", rc); + + rc = pass("test to pass"); + diag("Returned: %d", rc); + + rc = pass("test to pass %s", "with extra string"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/pass/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/pass/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/pass/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 2; +diag("Returned: " . sprintf('%d', $rc)); + +$rc = pass('test to pass'); +diag("Returned: $rc"); + +$rc = pass('test to pass with extra string'); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/pass/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/pass/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/pass/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/.cvsignore (revision 12167) @@ -0,0 +1,6 @@ +Makefile +Makefile.in +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/Makefile.am (revision 12167) @@ -0,0 +1,7 @@ +SUBDIRS = no-tests +SUBDIRS += no_plan +SUBDIRS += not-enough-tests +SUBDIRS += too-many-plans +SUBDIRS += too-many-tests +SUBDIRS += sane +SUBDIRS += skip_all Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(0); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 0; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no-tests/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_no_plan(); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +my $rc = 0; + +use Test::More; + +$rc = plan qw(no_plan); +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/no_plan/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.pl (revision 12167) @@ -0,0 +1,20 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/not-enough-tests/test.t (revision 12167) @@ -0,0 +1,30 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + # comment this out until we're exit-code compatible with Test::More + #retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/sane/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/sane/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/sane/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/sane/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/sane/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/sane/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.c (revision 12167) @@ -0,0 +1,43 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.pl (revision 12167) @@ -0,0 +1,14 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/sane/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/plan.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/plan.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/plan.c (revision 12167) @@ -0,0 +1,39 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include +#include + +#include "tap.h" + +/* Run pre-defined tests on the test library to make sure that the basic + functionality works, and it can be used to test itself afterwards */ + +int +main(int argc, char *argv[]) +{ + plan_skip_all("No good reason"); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.c (revision 12167) @@ -0,0 +1,38 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_skip_all("No good reason"); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.pl (revision 12167) @@ -0,0 +1,11 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan skip_all => "No good reason"; +diag("Returned: " . sprintf("%d", $rc)); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/skip_all/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.c (revision 12167) @@ -0,0 +1,49 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = plan_tests(1); + diag("Returned: %d", rc); + + rc = ok(0, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.pl (revision 12167) @@ -0,0 +1,20 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 1; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = plan tests => 1; +diag("Returned: $rc"); + +$rc = ok(0); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-plans/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.c (revision 12167) @@ -0,0 +1,46 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1, NULL); + diag("Returned: %d", rc); + + rc = ok(0, NULL); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.pl (revision 12167) @@ -0,0 +1,17 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + +$rc = ok(1); +diag("Returned: $rc"); + +$rc = ok(0); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/plan/too-many-tests/test.t (revision 12167) @@ -0,0 +1,30 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + # we're not exit-status compatible with Test::More yet + #retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/skip/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/skip/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/skip/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/skip/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/skip/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/skip/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/skip/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/skip/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/skip/test.c (revision 12167) @@ -0,0 +1,69 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + unsigned int side_effect = 0; + + rc = plan_tests(4); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); /* Should always work */ + diag("Returned: %d", rc); + + do { + if(1) { + rc = skip(1, "Testing skipping"); + continue; + } + + side_effect++; + + ok(side_effect == 1, "side_effect checked out"); + + } while(0); + + diag("Returned: %d", rc); + + skip_start(1 == 1, 1, "Testing skipping #2"); + + side_effect++; + rc = ok(side_effect == 1, "side_effect checked out"); + diag("Returned: %d", rc); + + skip_end(); + + rc = ok(side_effect == 0, "side_effect is %d", side_effect); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/skip/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/skip/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/skip/test.pl (revision 12167) @@ -0,0 +1,40 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 4; +diag("Returned: " . sprintf("%d", $rc)); + +my $side_effect = 0; # Check whether skipping has side effects + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +# Start skipping +SKIP: { + $rc = skip "Testing skipping", 1; + + $side_effect++; + + $rc = ok($side_effect == 1, '$side_effect checked out'); +} + +diag("Returned: $rc"); + +SKIP: { + $rc = skip "Testing skipping #2", 1; + diag("Returned: $rc"); + + $side_effect++; + + $rc = ok($side_effect == 1, '$side_effect checked out'); + diag("Returned: $rc"); +} + +$rc = ok($side_effect == 0, "side_effect is $side_effect"); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/skip/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/skip/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/skip/test.t (revision 12167) @@ -0,0 +1,29 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/tap/tests/todo/.cvsignore =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/todo/.cvsignore (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/todo/.cvsignore (revision 12167) @@ -0,0 +1,11 @@ +.deps +Makefile +Makefile.in +.libs +test +test.c.out +test.pl.out +*.bb +*.bbg +*.da +gmon.out Index: /branches/rel-1-1/psModules/test/tap/tests/todo/Makefile.am =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/todo/Makefile.am (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/todo/Makefile.am (revision 12167) @@ -0,0 +1,13 @@ + +TESTS = test.t +TESTS_ENVIRONMENT = $(SHELL) + +EXTRA_DIST = $(TESTS) test.pl + +check_PROGRAMS = test + +test_CFLAGS = -g -I$(top_srcdir)/src +test_LDFLAGS = -L$(top_builddir)/src +test_LDADD = -ltap + +CLEANFILES = test.o test.c.out test.pl.out Index: /branches/rel-1-1/psModules/test/tap/tests/todo/test.c =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/todo/test.c (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/todo/test.c (revision 12167) @@ -0,0 +1,68 @@ +/*- + * Copyright (c) 2004 Nik Clayton + * All rights reserved. + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND + * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS + * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF + * SUCH DAMAGE. + */ + +#include + +#include "tap.h" + +int +main(int argc, char *argv[]) +{ + unsigned int rc = 0; + unsigned int side_effect = 0; + + rc = plan_tests(5); + diag("Returned: %d", rc); + + rc = ok(1 == 1, "1 equals 1"); /* Should always work */ + diag("Returned: %d", rc); + + todo_start("For testing purposes"); + + side_effect++; + + /* This test should fail */ + rc = ok(side_effect == 0, "side_effect checked out"); + diag("Returned: %d", rc); + + /* This test should unexpectedly succeed */ + rc = ok(side_effect == 1, "side_effect checked out"); + diag("Returned: %d", rc); + + todo_end(); + + todo_start("Testing printf() %s in todo_start()", "expansion"); + + rc = ok(0, "dummy test"); + diag("Returned: %d", rc); + + todo_end(); + + rc = ok(side_effect == 1, "side_effect is %d", side_effect); + diag("Returned: %d", rc); + + return exit_status(); +} Index: /branches/rel-1-1/psModules/test/tap/tests/todo/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/todo/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/todo/test.pl (revision 12167) @@ -0,0 +1,41 @@ +#!/usr/bin/perl + +use warnings; +use strict; + +use Test::More; + +my $rc = 0; + +$rc = plan tests => 5; +diag("Returned: " . sprintf("%d", $rc)); + +my $side_effect = 0; # Check whether TODO has side effects + +$rc = ok(1 == 1, '1 equals 1'); # Test ok() passes when it should +diag("Returned: $rc"); + +# Start TODO tests +TODO: { + local $TODO = 'For testing purposes'; + + $side_effect++; + + # This test should fail + $rc = ok($side_effect == 0, 'side_effect checked out'); + diag("Returned: $rc"); + + # This test should unexpectedly succeed + $rc = ok($side_effect == 1, 'side_effect checked out'); + diag("Returned: $rc"); +} + +TODO: { + local $TODO = 'Testing printf() expansion in todo_start()'; + + $rc = ok(0, 'dummy test'); + diag("Returned: $rc"); +} + +$rc = ok($side_effect == 1, "side_effect is $side_effect"); +diag("Returned: $rc"); Index: /branches/rel-1-1/psModules/test/tap/tests/todo/test.t =================================================================== --- /branches/rel-1-1/psModules/test/tap/tests/todo/test.t (revision 12167) +++ /branches/rel-1-1/psModules/test/tap/tests/todo/test.t (revision 12167) @@ -0,0 +1,34 @@ +#!/bin/sh + +echo '1..2' + +perl $srcdir/test.pl 2> /dev/null > test.pl.out +perlstatus=$? + +# Test:;More prints diagnostic from TODO tests on stdout +# http://rt.cpan.org/Ticket/Display.html?id=14982 +sed '/^#/D' test.pl.out > tmp +mv tmp test.pl.out + +./test 2> /dev/null > test.c.out +cstatus=$? + +diff -u test.pl.out test.c.out + +if [ $? -eq 0 ]; then + echo 'ok 1 - output is identical' +else + retval=1 + echo 'not ok 1 - output is identical' +fi + +if [ $perlstatus -eq $cstatus ]; then + echo 'ok 2 - status code' +else + retval=1 + echo 'not ok 2 - status code' + echo "# perlstatus = $perlstatus" + echo "# cstatus = $cstatus" +fi + +exit $retval Index: /branches/rel-1-1/psModules/test/test.pl =================================================================== --- /branches/rel-1-1/psModules/test/test.pl (revision 12167) +++ /branches/rel-1-1/psModules/test/test.pl (revision 12167) @@ -0,0 +1,31 @@ +#!/usr/bin/env perl + +# Copyright (C) 2006 Joshua Hoblitt +# +# $Id: test.pl,v 1.1 2006-09-23 02:47:58 magnier Exp $ + +use strict; +use warnings FATAL => qw( all); + +use vars qw($VERSION); +$VERSION = '0.01'; + +use File::Find::Rule; +use Cwd; + +my $rule = File::Find::Rule->new; +# ignore .lib directories +$rule->or($rule->new + ->directory + ->name('.libs') + ->prune + ->discard, + $rule->new + ); +$rule->name(qr/^tap_[^.]*$/) + ->maxdepth(2) + ->relative; + +my @test_files = $rule->in(getcwd()); + +system("prove @test_files"); Index: /branches/rel-1-1/psconfig/.cvsignore =================================================================== --- /branches/rel-1-1/psconfig/.cvsignore (revision 12167) +++ /branches/rel-1-1/psconfig/.cvsignore (revision 12167) @@ -0,0 +1,1 @@ +tarballs Index: /branches/rel-1-1/psconfig/INSTALL =================================================================== --- /branches/rel-1-1/psconfig/INSTALL (revision 12167) +++ /branches/rel-1-1/psconfig/INSTALL (revision 12167) @@ -0,0 +1,118 @@ + +The psconfig system allows the user to build and install the IPP +software suite into a location which is flexibly defined by the user. +The tools here also set up the user's environment variables (PATH, +PERL5LIB, LD_LIBRARY_PATH, etc) to make use of the installed +software. With the psconfig tools, it is easy to switch between +different installed versions or to recompile subsets of the IPP tree. + +1. Set up the psconfig system. +1.1 csh users + +To use the psconfig system, place the following line in your ~/.cshrc +file: + +alias psconfig "source PATH/psconfig.sh" + +where PATH is the path to the file psconfig.sh in this directory +(ipp/psconfig/psconfig.sh). + +The psconfig system places the installed binary files by default in +directories below ~/psconfig. To use a different location, place the +following line in ~/.psconfigrc (otherwise not needed): + +set PSCONFIG = INSTALL_PATH + +where INSTALL_PATH is the top-level directory for all binary +installations. + +1.2 bash users + +Add the following line to your ~/.bashrc file: + +alias psconfig="source PATH/psconfig.bash" + +it is also necessary to edit the file psconfig.bash to set the INSTALL +variable to this directory as well. + +2. Using psconfig to set / examine your install system: + +Before running or compiling the IPP, it is necessary to use psconfig +to set the installation version: + +psconfig (version) + +This command sets aliases and environment variables for the current +shell to point at the IPP installation labeled with the given version +name and hardware architecture. For example: + +psconfig default + +will set the PATH to include ~/psconfig/default.linux/bin on a 32-bit +linux system, and the other paths to point at the corresponding +installation directories. + +3. Dependencies + +3.1. External C libraries + +The program 'pschecklibs' in this directory will check for required +system libraries and headers. It examines the system libraries, +libraries defined by LD_LIBRARY_PATH, and the installation library +defined by psconfig. Any missing dependencies will be listed. +Tarballs for these libraries may be found on the Pan-STARRS web site +at: + +http://pan-starrs.ifa.hawaii.edu/project/IPP/software/ext + +These should be installed so they will be available in the user's +path. The psconfig commands can be used to install these libraries in +the psconfig location: + +'psautogen' replaces autogen.sh +'psconfigure' replaces configure + +3.2 External Perl Modules + +The program 'pscheckperl' in this directory will check for required +Perl modules, and can be used to install them in the appropriate user +location in the psconfig system. The command requires the name of an +IPP distribution, eg: + +pscheckperl ipp-1.0 + +will test for the perl modules specified for the ipp 1.0 release. +if any modules are missing, they can be download from the Pan-STARRS +web site: + +http://pan-starrs.ifa.hawaii.edu/project/IPP/software/extperl + +The tarballs should be placed in a directory extperl parallel to the +ipp directory (two levels up from this directory). If the tarballs +are in the correct location, they can be built by supplying the -build +flag to pscheckperl: + +pscheckperl ipp-1.0 -build + +4. Building + +To build the full IPP tree using the psconfig system, run 'psbuild' in +this directory, and provide a distribution name. The distributions +define the set of IPP libraries and programs versions which go +together. NOTE: If we provide a tarball, it is appropriate to a +specific version. this should be automatically set as the default! + +psbuild ipp-1.0 + +------ + +Summary of psconfig operations: + +psdist -tag : tag CVS tree +psdist -dist : build tarball from tagged tree +psdist -dist -head : build tarball from head +psbuild : build and install software in tree +pschecklibs : check for needed external software +pscheckperl : check for needed perl modules +pscheckperl -build : build and install external modules + Index: /branches/rel-1-1/psconfig/TODO =================================================================== --- /branches/rel-1-1/psconfig/TODO (revision 12167) +++ /branches/rel-1-1/psconfig/TODO (revision 12167) @@ -0,0 +1,40 @@ + +2007.02.02 : IPP release 1.0 : Known Outstanding Issues + +This release of the IPP software is missing a number of major features +defined in the IPP System Concept Definition. There are also a number +of missing minor features, bells and whistles which have been +identified. + +Major Missing Features: + +* Phase 4 Tools. This release does not include the Phase 4 programs +pswarp, ppStac, and poisub, and the related infrastructure support in +ippTools and ippScripts. + +* Static Sky tools. This release does not include a number of elements +related to the static sky definition: the definition of the static sky +cells and tools to manipulate them; the static sky surface brightness +modelling tool; and photometry analysis operations for large, extended +objects. + +* relastro. The global astrometry analysis software is unimplemented. + +* flat-field corrections. The DVO flat-field correction analysis is +not integrated with the rest of the IPP detrend creation system. + +Minor Missing Features: + +* full set of columns in output object tables from Phase 2. +* ippMonitor user interface missing a variety of options +* output plots from psphot and pspastro are not exported to ippMonitor +* this list is complete. +* ETC... + +In addition, there are + +* incomplete documentation + +* incomplete testing on: + - Nebulous integration + - DVO integration Index: /branches/rel-1-1/psconfig/ckmodule.pl =================================================================== --- /branches/rel-1-1/psconfig/ckmodule.pl (revision 12167) +++ /branches/rel-1-1/psconfig/ckmodule.pl (revision 12167) @@ -0,0 +1,11 @@ +#!/usr/bin/env perl + +if (@ARGV != 1) { die "USAGE: ckmodule.pl\n"; } + +$x = eval "require $ARGV[0]; 1"; +if ($x) { + exit 0; +} else { + exit 1; +} + Index: /branches/rel-1-1/psconfig/notes.txt =================================================================== --- /branches/rel-1-1/psconfig/notes.txt (revision 12167) +++ /branches/rel-1-1/psconfig/notes.txt (revision 12167) @@ -0,0 +1,34 @@ + +2007.02.28 : cleanup configuration tools + +operations we would like to perform with these tools: + +tag CVS tree +build tarball from tagged tree +build tarball from head +build and install software in tree +check for needed external software +* build and install external software +check for needed perl modules +build and install external modules + + +YAML : asks for installation confirmation. + + should be safe for local installs. if you use something dependent + on YAML 0.50 then you should remove the path from the PERL5LIB + +Template : asks about XS and additional files. we can skip both of these + +#!/bin/csh -f + +grep use `find .. -name "*.pm"` |\ + sed "s|::|@@|g" |\ + awk -F: '{print $2}' |\ + sed "s|@@|::|g" |\ + awk -F\; '{print $1}' |\ + grep -v "\#" |\ + sed "s|qw(|@|" |\ + awk -F@ '{print $1}' |\ + sort | uniq |\ + grep "^use" > perl.modules.list Index: /branches/rel-1-1/psconfig/psbuild =================================================================== --- /branches/rel-1-1/psconfig/psbuild (revision 12167) +++ /branches/rel-1-1/psconfig/psbuild (revision 12167) @@ -0,0 +1,266 @@ +#!/usr/bin/env perl + +$tagsets = "tagsets"; + +$version = ""; +$clean = 0; +$rebuild = 0; +$optimize = 0; +$start = ""; +$stop = ""; +$verbose = 0; + +@tARGV = (); +for (; @ARGV > 0; ) { + if ($ARGV[0] eq "-version") { + $version = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-verbose") { + $verbose = 1; + shift; next; + } + if ($ARGV[0] eq "-clean") { + $clean = 1; + shift; next; + } + if ($ARGV[0] eq "-rebuild") { + $rebuild = 1; + shift; next; + } + if ($ARGV[0] eq "-optimize") { + $optimize = 1; + shift; next; + } + if ($ARGV[0] eq "-only") { + $start = $ARGV[1]; + $stop = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-start") { + $start = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-stop") { + $stop = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-list") { + &list_distributions (); + } + if ($ARGV[0] eq "-h") { &usage (); } + if ($ARGV[0] eq "-help") { &usage (); } + if ($ARGV[0] eq "--help") { &usage (); } + @tARGV = (@tARGV, $ARGV[0]); + shift; +} +@ARGV = @tARGV; + +if ( @ARGV != 1) { &usage (); } + +$distribution = $ARGV[0]; +&load_distfile (); + +&build_distribution (); +exit 0; + +sub build_distribution { + + # use psconfig.sh to set needed build aliases + + # set the psconfig version: + if ("$version" eq "") { + $version = $ENV{'PSVERSION'}; + } + if ("$version" eq "") { + $version = "default"; + } + + $psconfigure = `csh psconfig.sh --psconfigure $version`; + $psautogen = `csh psconfig.sh --psautogen $version`; + $psperlbuild = `csh psconfig.sh --psperlbuild $version`; + + print "psconfigure: $psconfigure\n"; + print "psautogen: $psautogen\n"; + print "psperlbuild: $psperlbuild\n"; + + # set build environment variables + ps_setenv ("PATH", "--path"); + ps_setenv ("ARCH", "--arch"); + ps_setenv ("LD_LIBRARY_PATH", "--ld_library_path"); + ps_setenv ("PKG_CONFIG_PATH", "--pkg_config_path"); + ps_setenv ("ACLOCAL_FLAGS", "--aclocal_flags"); + ps_setenv ("PERL5LIB", "--perl5lib"); + + print STDERR "ENV: $ENV{'PATH'}\n"; + + $psopts = ""; + if ($optimize) { $psopts = "$psopts --enable-optimize"; } + + $homedir = `pwd`; chomp $homedir; + + for ($i = 0; $i < @cvsname; $i++) { + if (($start ne "") && ($start ne $cvsname[$i])) { next; } + $start = ""; + + ($do_tag, $do_build, $do_package, $do_update) = $mode[$i] =~ m|(\S)(\S)(\S)(\S)|; + if ($do_build eq "N") { next; } + + $workdir = "../$cvsname[$i]"; + print "workdir: $workdir\n"; + chdir $workdir; + + # XXX need to grab current value for cleanup + print "\n ** psbuild: $cvsname[$i] ** \n"; + print "\033]0; ** psbuild: $cvsname[$i] ** \007"; + + # how do we build this component? + # - autogen.sh : configure : make : make install + # - configure : make : make install + # - make : make install + # - perl Build.PL : ./Build : ./Build install + + if (-e "Build.PL") { + vsystem ("$psperlbuild"); + if ($?) { &failure($cvsname[$i], "failure in perl Build.PL"); } + + vsystem ("./Build"); + if ($?) { &failure($cvsname[$i], "failure in Build"); } + + vsystem ("./Build install"); + if ($?) { &failure($cvsname[$i], "failure in Build install"); } + + next; + } + + if ($rebuild && $clean) { + if (-e "configure") { unlink "Makefile"; } + if (-e "configure.ac" && -e "autogen.sh") { unlink "configure"; } + } + $rebuild_this = $rebuild; + + # set a local variable for this loop on rebuild; + if (! -e "Makefile") { $rebuild_this = 1; } + + # run autogen + $skip_configure = 0; + if ($rebuild_this && ! -e "configure" && -e "autogen.sh") { + $skip_configure = 1; + vsystem ("$psautogen $psopts"); + if ($?) { &failure($cvsname[$i], "failure in psautogen"); } + } + + if ($rebuild_this && -e "configure" && !$skip_configure) { + vsystem ("$psconfigure $psopts"); + if ($?) { &failure($cvsname[$i], "failure in psconfigure"); } + } + + if (! -e "Makefile") { &failure($cvsname[$i], "missing makefile"); } + + if ($clean) { + vsystem ("make clean"); + if ($?) { &failure($cvsname[$i], "failure in make clean"); } + } + + vsystem ("make"); + if ($?) { &failure($cvsname[$i], "failure in make"); } + + vsystem ("make install"); + if ($?) { &failure($cvsname[$i], "failure in make install"); } + + print "*** done with $cvsname[$i] ***\n"; + + success: + chdir $homedir; + if (($stop ne "") && ($stop eq $cvsname[$i])) { last; } + } + print "\033]0; ** psbuild: finished ** \007"; + exit 0; +} + +sub vsystem { + print STDERR "@_\n"; + $status = system ("@_"); + $status; +} + +sub list_distributions { + @list = <$tagsets/*.dist>; + foreach $line (@list) { + chomp $line; + ($dist) = $line =~ m|$tagsets/(\S*).dist|; + print STDERR "$dist\n"; + } + exit 2; +} + +sub load_distfile { + # open and read the distribution file + # results go into @cvsname, @branchtag, @branchver, @mode + $file = "$tagsets/$ARGV[0].dist"; + open (FILE, $file) || die "ERROR: can't open distribution file $file\n"; + @list = ; + close (FILE); + + @mode = (); + @cvsname = (); + @branchtag = (); + @branchver = (); + + foreach $line (@list) { + chop $line; + if ($line =~ m|^\s*$|) { next; } + if ($line =~ m|^\s*\#|) { next; } + + ($mode, $cvsname, $branchtag, $branchver) = split (" ", $line); + + if ($cvsname eq "") { die "missing module name\n"; } + + ($do_tag, $do_build, $do_package, $do_update) = $mode =~ m|(\S)(\S)(\S)(\S)|; + if (($do_tag ne "Y") && ($do_tag ne "N")) { die "invalid tag option $do_tag\n"; } + if (($do_build ne "Y") && ($do_build ne "N")) { die "invalid tag option $do_build\n"; } + if (($do_package ne "Y") && ($do_package ne "N")) { die "invalid tag option $do_package\n"; } + if (($do_update ne "Y") && ($do_update ne "N")) { die "invalid tag option $do_update\n"; } + + if ($verbose) { print "tag: $do_tag, build: $do_build, package: $do_package, update: $do_update "; } + if ($verbose) { print "module: $cvsname, branchtag: $branchtag, branchver: $branchver \n"; } + + push @mode, $mode; + push @cvsname, $cvsname; + push @branchtag, $branchtag; + push @branchver, $branchver; + } +} + +sub failure { + die "problem building $_[0] : $_[1]\n"; + print "\033]0; ** psbuild: failure ** \007"; +} + +sub usage { + print STDERR "USAGE: psbuild [options] (distribution)\n"; + print STDERR " : -version (version) : specify alternate psconfig installation version\n"; + print STDERR " : -clean : clean the source directories before building\n"; + print STDERR " : -rebuild : run 'autogen' (C code)\n"; + print STDERR " : -optimize : set flags for optimized code\n"; + print STDERR " : -only (module) : only build the specified module\n"; + print STDERR " : -start (module) : begin build at specified module\n"; + print STDERR " : -stop (module) : stop build after specified module\n\n"; + print STDERR " : psbuild -list : list the available distributions\n"; + print STDERR " : psbuild -h : this help listing\n"; + print STDERR " : psbuild -help : this help listing\n"; + print STDERR " : psbuild --help : this help listing\n"; + exit 2; +} + +sub ps_setenv { + + my $var = $_[0]; + my $flag = $_[1]; + + my $answer = `csh psconfig.sh $flag $version`; + chomp $answer; + + $ENV{$var} = $answer; +} + Index: /branches/rel-1-1/psconfig/pschecklibs =================================================================== --- /branches/rel-1-1/psconfig/pschecklibs (revision 12167) +++ /branches/rel-1-1/psconfig/pschecklibs (revision 12167) @@ -0,0 +1,244 @@ +#!/bin/csh -f + +# this scripts searches for the needed libraries in standard locations and in the +# current psconfig installation tree + +set version = "" +set args = "" +while ("$1" != "") + switch ("$1") + case -version: + shift + set version = $1 + breaksw + case --help: + goto usage + case -*: + echo "" + echo "Unknown option: $1" + goto usage + default: + set args=($args $1); + breaksw; + endsw + shift +end +if ($#args != 1) goto usage + +# set supplied PSVERSION +if ("$version" != "") then + setenv PSVERSION $version +endif + +# set paths for PSVERSION +set libdir = `source psconfig.sh --libs $PSVERSION` +set incdir = `source psconfig.sh --include $PSVERSION` + +# I supplement this list with LD_LIBRARY_PATH below +set syslibpath = "/lib /usr/lib /usr/X11R6/lib /usr/openwin/lib /usr/local/lib" +set needlibs = "" +set needlibs = "$needlibs png" +set needlibs = "$needlibs z" +set needlibs = "$needlibs jpeg" +set needlibs = "$needlibs readline" +set needlibs = "$needlibs X11" +set needlibs = "$needlibs pthread" +set needlibs = "$needlibs cfitsio" +set needlibs = "$needlibs mysqlclient" +set needlibs = "$needlibs gsl" +set needlibs = "$needlibs xml2" +set needlibs = "$needlibs fftw3" +set needlibs = "$needlibs fftw3f" +set needlibs = "$needlibs m" + +# /usr/local/include/libpng is really pretty lame... +set sysincpath = "/usr/include /usr/local/include /usr/X11R6/include /usr/openwin/include /usr/local/include/libpng" + +set needincs = "" +set needincs = "$needincs X11/Xatom.h" +set needincs = "$needincs X11/Xlib.h" +set needincs = "$needincs X11/Xresource.h" +set needincs = "$needincs X11/Xutil.h" +set needincs = "$needincs X11/cursorfont.h" +set needincs = "$needincs X11/keysym.h" +set needincs = "$needincs X11/keysymdef.h" +set needincs = "$needincs arpa/inet.h" +set needincs = "$needincs assert.h" +set needincs = "$needincs complex.h" +set needincs = "$needincs ctype.h" +set needincs = "$needincs errno.h" +set needincs = "$needincs fcntl.h" +set needincs = "$needincs fitsio.h" +set needincs = "$needincs glob.h" +set needincs = "$needincs gsl/gsl_randist.h" +set needincs = "$needincs gsl/gsl_rng.h" +set needincs = "$needincs inttypes.h" +set needincs = "$needincs jpeglib.h" +set needincs = "$needincs limits.h" +set needincs = "$needincs malloc.h" +set needincs = "$needincs math.h" +set needincs = "$needincs memory.h" +set needincs = "$needincs netdb.h" +set needincs = "$needincs netinet/ip.h" +set needincs = "$needincs png.h" +set needincs = "$needincs pthread.h" +set needincs = "$needincs readline/history.h" +set needincs = "$needincs readline/readline.h" +set needincs = "$needincs regex.h" +set needincs = "$needincs signal.h" +set needincs = "$needincs stdint.h" +set needincs = "$needincs stdio.h" +set needincs = "$needincs stdlib.h" +set needincs = "$needincs string.h" +set needincs = "$needincs sys/ipc.h" +set needincs = "$needincs sys/resource.h" +set needincs = "$needincs sys/sem.h" +set needincs = "$needincs sys/socket.h" +set needincs = "$needincs sys/stat.h" +set needincs = "$needincs sys/time.h" +set needincs = "$needincs sys/types.h" +set needincs = "$needincs sys/uio.h" +set needincs = "$needincs sys/un.h" +set needincs = "$needincs sys/wait.h" +set needincs = "$needincs time.h" +set needincs = "$needincs unistd.h" +set needincs = "$needincs values.h" +set needincs = "$needincs zlib.h" + +# XXX need to have options for non-ANSI includes? (ie, varargs.h) +# set needincs = "$needincs libxml/parser.h" +# set needincs = "$needincs cfuncs.h" - from non-ANSI option in ohana.h +# set needincs = "$needincs float.h" - is from missing_proto (CFHT) +# set needincs = "$needincs floatingpoint.h" - is from missing_proto (CFHT) +# set needincs = "$needincs stdarg.h" - from std includes (in gcc path) +# set needincs = "$needincs varargs.h" - from std includes (in gcc path) +# set needincs = "$needincs stdbool.h" - from std includes (in gcc path) ? + +# check the hardware architecture: +set sys=`uname -s` +set ranlib = "ranlib" +switch ($sys) + case IRIX64: + set arch="irix"; + breaksw; + case SunOS: + set ver=`uname -r | awk '{print substr($1,1,1)}'`; + if ($ver == 5) then + set arch="sol"; + else + set arch="sun4"; + endif + # sun (at least) seems to need the socket library (linux does not) + set needlibs = "$needlibs libsocket libnsl" + set ranlib = "touch" + breaksw; + case Linux: + set arch="linux"; + if (-e /etc/sidious.config) set arch="sid"; + set mach=`uname -m` + if ("$mach" == "x86_64") then + set arch="lin64"; + set syslibpath = "/lib64 /usr/lib64 /usr/X11R6/lib64 $syslibpath" + endif + breaksw; + case HP-UX: + set arch="hpux"; + breaksw; + default: + echo "unknown architecture"; + exit 1; + breaksw; +endsw +echo "setting architecture to: $arch" + +# add the LD_LIBRARY_PATH +if ($?LD_LIBRARY_PATH) then + set libpath = `echo $LD_LIBRARY_PATH | tr ':' ' '` +else + set libpath = "" +endif + +# check for basic libraries +echo "" +echo "searching for needed external libraries..." +set faillibs = "" +set libflags = "" +set libdirs = "" +set nonomatch +foreach f ( $needlibs ) + foreach g ( $syslibpath $libdir $libpath ) + if (! -e $g) continue + set name = $g/lib$f.a + if (-e $name[1]) goto got_lib; + set name = $g/lib$f.so* + if (-e $name[1]) goto got_lib; + end + echo "missing lib$f" + set faillibs = "$faillibs lib$f" + continue +got_lib: + echo "found lib$f ($name[$#name])" +end + +# we need a curses library; can choose one of the following: +# check for termcap, curses, etc +foreach f ( ncurses curses termcap ) + foreach g ( $syslibpath $libdir $libpath ) + set name = $g/lib$f.a + if (-e $name[1]) goto got_curses; + set name = $g/lib$f.so* + if (-e $name[1]) goto got_curses; + end +end +set faillibs = "$faillibs (ncurses | curses | termcap)" +echo "missing a valid curses library" +echo "missing: $faillibs" +echo "please find one of them and install them in $lib" +exit 1 + +got_curses: + echo "found $f ($name[$#name])" + +if ("$faillibs" != "") then + echo "your installation is missing some important libraries" + echo "missing: $faillibs" + echo "please find them and install them in $lib" + exit 1 +endif + +# check for headers +echo "" +echo "searching for needed external header files..." +set failincs = "" +set incdirs = "" +foreach f ( $needincs ) + foreach g ( $sysincpath $incdir ) + set name = "$g/$f" + if (-e $name) goto got_inc; + end + echo "missing $f" + set failincs = "$failincs $f" + continue +got_inc: + echo "found $f ($name)" +end + +if ("$failincs" != "") then + echo "your installation is missing some important library headers" + echo "please find them and install them in $inc" + exit 1 +endif + +exit 0 + +usage: +cat < 0; ) { + if ($ARGV[0] eq "-version") { + $version = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-build") { + $check = 0; + shift; next; + } + if ($ARGV[0] eq "-h") { &usage (); } + if ($ARGV[0] eq "help") { &usage (); } + if ($ARGV[0] eq "-help") { &usage (); } + if ($ARGV[0] eq "--help") { &usage (); } + if ($ARGV[0] eq "-list") { &list_distributions(); } + @tARGV = (@tARGV, $ARGV[0]); + shift; +} +@ARGV = @tARGV; +if ( @ARGV > 1) { &usage(); } + +if ( @ARGV == 0) { + @list = <$tagsets/*.perl>; + $file = $list[-1]; +} else { + $file = $ARGV[0]; +} +print "examining perl modules based on $file\n"; + +# load the perl module list +open (FILE, $file) || die "ERROR: can't open perl module list: $file\n"; +@list = ; +close (FILE); + +# set the psconfig version: +if ("$version" eq "") { + $version = $ENV{'PSVERSION'}; +} +if ("$version" eq "") { + $version = "default"; +} + + +$prefix = `csh -f psconfig.sh --prefix $version`; chomp $prefix; +$perldir = `csh -f psconfig.sh --perldir $version`; chomp $perldir; +$homedir = `pwd`; chomp $homedir; + +print "psconfig version: $version\n"; +print "prefix: $prefix\n"; +print "perldir: $perldir\n"; +print "PERL5LIB: $ENV{'PERL5LIB'}\n"; + +$Nmissing = 0; +foreach $line (@list) { + chop $line; + if ($line =~ m|^\s*$|) { next; } + if ($line =~ m|^\s*\#|) { next; } + + ($N, $module, $tarball, $prompts) = split (" ", $line); + + system ("ckmodule.pl $module"); + if ($? == 0) { + # print "$module: found\n"; + next; + } + + print "$module: missing\n"; + if ($check) { + $Nmissing ++; + next; + } + + # try to build the module from ../../extperl/Module.*.tar.gz + chdir "../../extperl"; + + print "extract $module from $tarball\n"; + vsystem ("tar xvzf $tarball"); + + ($tardir) = $tarball =~ m|(\S*).tar.gz|; + print "tardir: $tardir\n"; + + chdir $tardir; + + # build the MakeMaker makefile, setting the output directories + if ($prompts) { + @answers = split (",", $prompts); + open (PIPE, "|perl Makefile.PL PREFIX=$prefix LIB=$perldir"); + foreach $answer (@answers) { + print PIPE "$answer\n"; + } + close (PIPE); + } else { + vsystem ("perl Makefile.PL PREFIX=$prefix LIB=$perldir"); + } + + vsystem ("make < /dev/null"); + vsystem ("make install"); + + chdir $homedir; +} +if ($check) { + if ($Nmissing > 0) { + print "$Nmissing perl modules are missing from your system\n"; + print "you may install them in your local path by re-running psperlmods with -build\n"; + } else { + print "no perl modules are missing from your system\n"; + } +} +exit 0; + +sub usage { + print STDERR "USAGE: ckperlmods [-version] [-build]\n"; + exit 2; +} + +sub vsystem { + print STDERR "@_\n"; + $status = system ("@_"); + $status; +} + +sub list_distributions { + @list = <$tagsets/*.perl>; + foreach $line (@list) { + chomp $line; + ($dist) = $line =~ m|$tagsets/(\S*).perl|; + print STDERR "$dist\n"; + } + exit 2; +} Index: /branches/rel-1-1/psconfig/psconfig.bash =================================================================== --- /branches/rel-1-1/psconfig/psconfig.bash (revision 12167) +++ /branches/rel-1-1/psconfig/psconfig.bash (revision 12167) @@ -0,0 +1,33 @@ +# this script sets the PS IPP build environment for BASH shell users + +INSTALL=/home/kiawe/eugene/src.alala/panstarrs/ipp/psconfig + +if (( $# == 0 )); then + /bin/csh $INSTALL/psconfig.sh + return 0 +fi + +if [[ "$1" == "--help" ]]; then + echo "USAGE: psconfig (version) : set configuration to specified version" + return 0 +fi + +version=$1 +psconfigure=`/bin/csh $INSTALL/psconfig.sh --psconfigure $version` +psautogen=`/bin/csh $INSTALL/psconfig.sh --psautogen $version` +psperlbuild=`/bin/csh $INSTALL/psconfig.sh --psperlbuild $version` +alias psconfigure=$psconfigure +alias psautogen=$psautogen +alias psperlbuild=$psperlbuild + +# psconfig env variables +export PSCONFDIR=`/bin/csh $INSTALL/psconfig.sh --psconfdir $version` +export PSVERSION=`/bin/csh $INSTALL/psconfig.sh --psversion $version` + +# environment variables +export PATH=`/bin/csh $INSTALL/psconfig.sh --path $version` +export ARCH=`/bin/csh $INSTALL/psconfig.sh --arch $version` +export LD_LIBRARY_PATH=`/bin/csh $INSTALL/psconfig.sh --ld_library_path $version` +export PKG_CONFIG_PATH=`/bin/csh $INSTALL/psconfig.sh --pkg_config_path $version` +export ACLOCAL_FLAGS=`/bin/csh $INSTALL/psconfig.sh --aclocal_flags $version` +export PERL5LIB=`/bin/csh $INSTALL/psconfig.sh --perl5lib $version` Index: /branches/rel-1-1/psconfig/psconfig.sh =================================================================== --- /branches/rel-1-1/psconfig/psconfig.sh (revision 12167) +++ /branches/rel-1-1/psconfig/psconfig.sh (revision 12167) @@ -0,0 +1,416 @@ +#/bin/csh -f +# this file is sourced using the command 'psconfig' + +# list the defined psconfig versions +set show_prefix = 0 +set show_libs = 0 +set show_bin = 0 +set show_arch = 0 +set show_path = 0 +set show_include = 0 +set show_configure = 0 +set show_autogen = 0 +set show_perlbuild = 0 +set show_perldir = 0 +set show_perl5lib = 0 +set show_psversion = 0 +set show_psconfdir = 0 +set show_ld_library_path = 0 +set show_pkg_config_path = 0 +set show_aclocal_flags = 0 +set args = "" +while ($#argv) + switch ($argv[1]) + case --help: + goto help; + case --list: + /bin/ls $PSCONFDIR | grep -v "\" | grep -v "\" | awk -v dir=$PSCONFDIR -F. '{printf "%s : %-10s : %s\n", dir, $1, $2}' + exit 0 + case --prefix: + set show_prefix = 1 + breaksw + case --libs: + set show_libs = 1 + breaksw + case --bin + set show_bin = 1 + breaksw + case --include + set show_include = 1 + breaksw + case --psconfigure: + set show_configure = 1 + breaksw; + case --psautogen: + set show_autogen = 1 + breaksw; + case --psperlbuild: + set show_perlbuild = 1 + breaksw; + case --perldir: + set show_perldir = 1 + breaksw; + case --perl5lib: + set show_perl5lib = 1 + breaksw; + case --psversion + set show_psversion = 1 + breaksw; + case --psconfdir + set show_psconfdir = 1 + breaksw; + case --ld_library_path + set show_ld_library_path = 1 + breaksw; + case --pkg_config_path + set show_pkg_config_path = 1 + breaksw; + case --arch + set show_arch = 1 + breaksw; + case --path + set show_path = 1 + breaksw; + case --aclocal_flags + set show_aclocal_flags = 1 + breaksw; + case -*: + echo "unknown option $1" + goto help; + default: + set args=($args $1); + breaksw; + endsw + shift +end +if ($#args != 1) goto usage +if ("$args" == "") goto usage + +# make this configurable by the user +setenv PSCONFDIR {$HOME}/psconfig +setenv PSVERSION default + +if (-e $HOME/.psconfigrc) then + source $HOME/.psconfigrc +endif + +setenv PSVERSION $args[1] + +if ($?LD_LIBRARY_PATH == 0) setenv LD_LIBRARY_PATH +if ($?PKG_CONFIG_PATH == 0) setenv PKG_CONFIG_PATH +if ($?PERL5LIB == 0) setenv PERL5LIB + +# identify system architecture +set sys=`uname -s` +if ("$sys" == "SunOS") then + set ver = `uname -r | awk '{print substr($1,1,1)}'`; + if ($ver > 4) then + set sys = "Solaris" + endif +endif +if ("$sys" == "Linux") then + grep "Sidious" /etc/issue > /dev/null + if ($status == 0) then + set sys = Sidious + endif + grep "Red Hat Enterprise" /etc/issue > /dev/null + if ($status == 0) then + set sys = RedHat + endif +endif + +# determine architecture-dependent paths & variables for all shells +switch ($sys) + case IRIX64: + setenv ARCH irix; + breaksw; + + case Solaris: + setenv ARCH sol + breaksw; + + case SunOs: + setenv ARCH sun4 + breaksw; + + case Linux: + setenv ARCH linux; + set mach=`uname -m` + if ("$mach" == "x86_64") setenv ARCH lin64 + breaksw; + + case Sidious: + setenv ARCH sid; + breaksw; + + case RedHat: + setenv ARCH linrh; + breaksw; + + case HP-UX: + setenv ARCH hp; + breaksw; + + default: + echo "unknown architecture"; + setenv ARCH unknown; + breaksw; +endsw + +setenv PSCONFIG $PSVERSION.$ARCH + +set newpath = "" +set pathlist = `echo $PATH | tr ':' '\n'` +foreach name ($pathlist) + echo $name | grep $PSCONFDIR > /dev/null + if ($status == 0) continue + if ($newpath == "") then + set newpath = {$name}: + else + set newpath = {$newpath}{$name}: + endif +end +set bindir = {$PSCONFDIR}/{$PSCONFIG}/bin +if ("$PSCONFIG" == "none") then + setenv PATH {$newpath} +else + setenv PATH {$bindir}:{$newpath} +endif + +set mandir = {$PSCONFDIR}/man +set newpath = "" +set pathlist = `echo $MANPATH | tr ':' '\n'` +foreach name ($pathlist) + echo $name | grep $PSCONFDIR > /dev/null + if ($status == 0) continue + if ($newpath == "") then + set newpath = {$name}: + else + set newpath = {$newpath}{$name}: + endif +end +if ("$PSCONFIG" == "none") then + if ("$newpath" == "") then + unsetenv MANPATH + else + setenv MANPATH {$newpath} + endif +else + if ("$newpath" == "") then + setenv MANPATH {$mandir}: + else + setenv MANPATH {$mandir}:{$newpath} + endif +endif + +set libdir = {$PSCONFDIR}/{$PSCONFIG}/lib +set newpath = "" +set pathlist = `echo $LD_LIBRARY_PATH | tr ':' '\n'` +foreach name ($pathlist) + echo $name | grep $PSCONFDIR > /dev/null + if ($status == 0) continue + if ($newpath == "") then + set newpath = {$name}: + else + set newpath = {$newpath}{$name}: + endif +end +if ("$PSCONFIG" == "none") then + if ("$newpath" == "") then + unsetenv LD_LIBRARY_PATH + else + setenv LD_LIBRARY_PATH {$newpath} + endif +else + if ("$newpath" == "") then + setenv LD_LIBRARY_PATH {$libdir}: + else + setenv LD_LIBRARY_PATH {$libdir}:{$newpath} + endif +endif + +# Build wants to put things in prefix/*, MakeMaker wants to put them in prefix/perl5/* +set plibdir = {$PSCONFDIR}/{$PSCONFIG}/lib +# set plib5dir = {$PSCONFDIR}/{$PSCONFIG}/lib/perl5 +set newpath = "" +set pathlist = `echo $PERL5LIB | tr ':' '\n'` +# build newpath with contents of PERL5LIB excluding PSCONFDIR entries +foreach name ($pathlist) + echo $name | grep $PSCONFDIR > /dev/null + if ($status == 0) continue + if ($newpath == "") then + set newpath = {$name}: + else + set newpath = {$newpath}{$name}: + endif +end +if ("$PSCONFIG" == "none") then + if ("$newpath" == "") then + unsetenv PERL5LIB + else + setenv PERL5LIB {$newpath} + endif +else + if ("$newpath" == "") then + setenv PERL5LIB {$plibdir}: + # setenv PERL5LIB {$plibdir}:{$plib5dir}: + else + setenv PERL5LIB {$plibdir}:{$newpath} + # setenv PERL5LIB {$plibdir}:{$plib5dir}:{$newpath} + endif +endif + +set newpath = "" +set pathlist = `echo $PKG_CONFIG_PATH | tr ':' '\n'` +foreach name ($pathlist) + echo $name | grep $PSCONFDIR > /dev/null + if ($status == 0) continue + if ($newpath == "") then + set newpath = {$name}: + else + set newpath = {$newpath}{$name}: + endif +end +if ("$PSCONFIG" == "none") then + if ("$newpath" == "") then + unsetenv PKG_CONFIG_PATH + else + setenv PKG_CONFIG_PATH {$newpath} + endif +else + if ("$newpath" == "") then + setenv PKG_CONFIG_PATH {$PSCONFDIR}/{$PSCONFIG}/lib/pkgconfig: + else + setenv PKG_CONFIG_PATH {$PSCONFDIR}/{$PSCONFIG}/lib/pkgconfig:{$newpath} + endif +endif + +if ("$PSCONFIG" == "none") then + alias psconfigure configure + alias psautogen autogen.sh + alias psperlbuild perl Build.PL +else + alias psconfigure configure --prefix={$PSCONFDIR}/{$PSCONFIG} --bindir=$bindir --libdir=$libdir --includedir={$PSCONFDIR}/{$PSCONFIG}/include --sysconfdir={$PSCONFDIR}/{$PSCONFIG}/etc --datadir={$PSCONFDIR}/share --mandir={$PSCONFDIR}/man + alias psautogen autogen.sh --bindir=$bindir --libdir=$libdir --mandir=$mandir --includedir={$PSCONFDIR}/{$PSCONFIG}/include --sysconfdir={$PSCONFDIR}/{$PSCONFIG}/etc --datadir={$PSCONFDIR}/share + alias psperlbuild perl Build.PL --prefix {$PSCONFDIR}/{$PSCONFIG} --install_path script=$bindir --install_path arch=$bindir --install_path bin=$bindir --install_path lib=$libdir --install_path bindoc={$PSCONFDIR}/man/man1 --install_path libdoc={$PSCONFDIR}/man/man3 + setenv ACLOCAL_FLAGS "-I $PSCONFDIR/share/aclocal" +endif + +# list selected environment variables +if ($show_prefix) then + echo $PSCONFDIR/$PSVERSION.$ARCH + exit 0 +endif +if ($show_libs) then + echo $PSCONFDIR/$PSVERSION.$ARCH/lib + exit 0 +endif +if ($show_bin) then + echo $PSCONFDIR/$PSVERSION.$ARCH/bin + exit 0 +endif +if ($show_include) then + echo $PSCONFDIR/$PSVERSION.$ARCH/include + exit 0 +endif + +# list the defined psconfig versions +if ($show_configure) then + alias psconfigure + exit 0 +endif + +# list the defined psconfig versions +if ($show_autogen) then + alias psautogen + exit 0 +endif + +# list the defined psconfig versions +if ($show_perlbuild) then + alias psperlbuild + exit 0 +endif + +if ($show_perldir) then + echo $plibdir + exit 0 +endif + +if ($show_perl5lib) then + echo $PERL5LIB + exit 0 +endif + +if ($show_psversion) then + echo $PSVERSION + exit 0 +endif + +if ($show_psconfdir) then + echo $PSCONFDIR + exit 0 +endif + +if ($show_ld_library_path) then + echo $LD_LIBRARY_PATH + exit 0 +endif + +if ($show_pkg_config_path) then + echo $PKG_CONFIG_PATH + exit 0 +endif + +if ($show_arch) then + echo $ARCH + exit 0 +endif + +if ($show_path) then + echo $PATH + exit 0 +endif + +if ($show_aclocal_flags) then + echo $ACLOCAL_FLAGS + exit 0 +endif + + + +exit 0 + +usage: + if (! $?PSCONFDIR) echo "PSCONFDIR is not set : run psconfig with an argument to setup" + if (! $?PSVERSION) echo "PSVERSION is not set : run psconfig with an argument to setup" + if (! $?ARCH) echo "ARCH is not set : run psconfig with an argument to setup" + echo $PSCONFDIR : $PSVERSION : $ARCH + echo "psconfig --help for additional info" + exit 2 + +help: + echo "psconfig: set or show the current pslib configuration information" + echo "USAGE: psconfig (version) : set configuration to specified version" + echo " psconfig --bin : return the current path" + echo " psconfig --libs : return the current library path" + echo " psconfig --include" + echo + echo " psconfig --prefix : show prefix directory" + echo " psconfig --psconfigure" + echo " psconfig --psautogen" + echo " psconfig --psperlbuild" + echo " psconfig --perldir" + echo " psconfig --perl5lib" + echo " psconfig --psversion" + echo " psconfig --psconfdir" + echo " psconfig --ld_library_path" + echo " psconfig --pkg_config_path" + echo " psconfig --arch" + echo " psconfig --path" + echo " psconfig --aclocal_flags" + echo + echo " psconfig --list : list currently availabe configuration versions" + echo " psconfig --help : this listing" + echo " use ~/.psconfigrc to set PSCONFDIR as desired" + exit 1 Index: /branches/rel-1-1/psconfig/psdist =================================================================== --- /branches/rel-1-1/psconfig/psdist (revision 12167) +++ /branches/rel-1-1/psconfig/psdist (revision 12167) @@ -0,0 +1,280 @@ +#!/usr/bin/env perl + +$tagsets = "tagsets"; + +$cvs = 0; +$diff = 0; +$settag = 0; +$update = 0; +$mkdist = 0; +$module = ""; +$settag_mode = ""; +$update_mode = ""; +$mkdist_mode = ""; +$mkdist_head = 0; +@tARGV = (); +for (; @ARGV > 0; ) { + if ($ARGV[0] eq "-diff") { + $diff = 1; + shift; next; + } + if ($ARGV[0] eq "-update") { + $update = 1; shift; + if ($ARGV[0] eq "tags") { + $update_mode = "tags"; + shift; next + } + if ($ARGV[0] eq "head") { + $update_mode = "head"; + shift; next + } + &usage(); + } + if ($ARGV[0] eq "-tag") { + $settag = 1; shift; + if ($ARGV[0] eq "dev") { + $settag_mode = "dev"; + shift; next + } + if ($ARGV[0] eq "rev") { + $settag_mode = "rev"; + shift; next + } + if ($ARGV[0] eq "branch") { + $settag_mode = "branch"; + shift; next + } + &usage(); + } + if ($ARGV[0] eq "-dist") { + $mkdist = 1; shift; + if ($ARGV[0] eq "cvs") { + $mkdist_mode = "cvs"; + shift; next + } + if ($ARGV[0] eq "tree") { + $mkdist_mode = "tree"; + shift; next + } + if ($ARGV[0] eq "tarball") { + $mkdist_mode = "tarball"; + shift; next + } + &usage(); + } + if ($ARGV[0] eq "-module") { + $module = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-head") { $mkdist_head = 1; shift; next; } + if ($ARGV[0] eq "-list") { &list_distributions(); } + if ($ARGV[0] eq "-h") { &usage(); } + if ($ARGV[0] eq "-help") { &usage(); } + if ($ARGV[0] eq "--help") { &usage(); } + @tARGV = (@tARGV, $ARGV[0]); + shift; +} +@ARGV = @tARGV; + +if ( @ARGV != 1) { &usage (); } + +$distribution = $ARGV[0]; +&load_distfile (); + +if ($diff) { &difflist (); } +if ($settag) { &settags (); } +if ($update) { &update_tree (); } +if ($mkdist) { &make_distribution (); } +&usage(); + +sub vsystem { + print STDERR "@_\n"; + $status = system ("@_"); + $status; +} + +sub difflist { + + for ($i = 0; $i < @cvsname; $i++) { + # the base component cannot be rdiffed + print STDERR "--- $cvsname[$i] ---\n"; + if ($cvsname[$i] eq "base") { next; } + if ($tag[$i] eq "") { next; } + &vsystem ("cvs -q rdiff -s -r $tag[$i] $cvsname[$i]"); + print STDERR "\n\n"; + } + exit 0; +} + +sub settags { + print STDERR "setting tags\n"; + if ($settag_mode eq "") { die "-tag mode is not set\n"; } + for ($i = 0; $i < @cvsname; $i++) { + if (($module ne "") && ($module ne $cvsname[$i])) { next; } + ($do_tag, $do_build, $do_dist, $do_update) = $mode[$i] =~ m|(\S)(\S)(\S)(\S)|; + if ($do_tag eq "N") { + push @remind, $cvsname[$i]; + next; + } + if ($branchtag[$i] eq "") { die "branch tag missing for $cvsname[$i]\n"; } + if ($branchver[$i] eq "") { die "branch tag version missing\n"; } + $tag = "$branchtag[$i]$branchver[$i]"; + if ($settag_mode eq "branch") { + &vsystem ("cvs -q rtag -b $branchtag[$i] $cvsname[$i]"); + next; + } + if ($settag_mode eq "dev") { + &vsystem ("cvs -q rtag $tag $cvsname[$i]"); + next; + } + if ($settag_mode eq "rev") { + &vsystem ("cvs -q rtag -r $branchtag[$i] $tag $cvsname[$i]"); + next; + } + die "programming error"; + } + for ($i = 0; $i < @remind; $i++) { + print STDERR "remember to set tag for $remind[$i] if needed\n"; + } + exit 0; +} + +sub update_tree { + print STDERR "updating tree\n"; + if ($update_mode eq "") { die "-update mode is not set\n"; } + + $homedir = `pwd`; chomp $homedir; + chdir ".."; + + for ($i = 0; $i < @cvsname; $i++) { + if (($module ne "") && ($module ne $cvsname[$i])) { next; } + ($do_tag, $do_build, $do_dist, $do_update) = $mode[$i] =~ m|(\S)(\S)(\S)(\S)|; + if ($do_update eq "N") { + push @remind, $cvsname[$i]; + next; + } + # only update modules with tags + if ($branchtag[$i] eq "") { die "branch tag missing for $cvsname[$i]\n"; } + if ($branchver[$i] eq "") { die "branch tag version missing\n"; } + $tag = "$branchtag[$i]$branchver[$i]"; + if ($update_mode eq "tags") { + &vsystem ("cvs -q co -r $tag $cvsname[$i]"); + next; + } + if ($update_mode eq "head") { + &vsystem ("cvs -q co -A $cvsname[$i]"); + next; + } + die "programming error"; + } + for ($i = 0; $i < @remind; $i++) { + print STDERR "remember to update $remind[$i] if needed\n"; + } + chdir $homedir; + exit 0; +} + +# XXX probably need to force CVSROOT here +sub make_distribution { + # package distribution into a tarball + print STDERR "making distribution\n"; + if ($mkdist_mode eq "") { die "-dist mode is not set\n"; } + mkdir $distribution; + chdir $distribution; + for ($i = 0; $i < @cvsname; $i++) { + if (($module ne "") && ($module ne $cvsname[$i])) { next; } + ($do_tag, $do_build, $do_dist, $do_update) = $mode[$i] =~ m|(\S)(\S)(\S)(\S)|; + if ($do_dist eq "N") { next; } + + if ($branchtag[$i] eq "") { die "branch tag missing for $cvsname[$i]\n"; } + if ($branchver[$i] eq "") { die "branch tag version missing\n"; } + $tag = "$branchtag[$i]$branchver[$i]"; + + if ($mkdist_head) { + &vsystem ("cvs co $cvsname[$i]"); + if ($status) { die "error running cvs"; } + } else { + &vsystem ("cvs co -r $tag $cvsname[$i]"); + if ($status) { die "error running cvs"; } + } + } + chdir ".."; + if ($mkdist_mode eq "cvs") { exit 0; } + + &vsystem ("rm -r `find $distribution -name CVS`"); + if ($mkdist_mode eq "tree") { exit 0; } + + if (! -e tarballs) { mkdir "tarballs"; } + &vsystem ("tar cvzf tarballs/$distribution.tgz $distribution"); + if ($status) { die "error creating tarball\n"; } + exit 0; +} + +sub list_distributions { + @list = <$tagsets/*.dist>; + foreach $line (@list) { + chomp $line; + ($dist) = $line =~ m|$tagsets/(\S*).dist|; + print STDERR "$dist\n"; + } + exit 2; +} + +sub load_distfile { + # open and read the distribution file + # results go into @cvsname, @branchtag, @branchver, @mode + $file = "$tagsets/$ARGV[0].dist"; + open (FILE, $file) || die "ERROR: can't open distribution file $file\n"; + @list = ; + close (FILE); + + @mode = (); + @cvsname = (); + @branchtag = (); + @branchver = (); + + foreach $line (@list) { + chop $line; + if ($line =~ m|^\s*$|) { next; } + if ($line =~ m|^\s*\#|) { next; } + + ($mode, $cvsname, $branchtag, $branchver) = split (" ", $line); + + if ($cvsname eq "") { die "missing module name\n"; } + + ($do_tag, $do_build, $do_dist, $do_update) = $mode =~ m|(\S)(\S)(\S)(\S)|; + if (($do_tag ne "Y") && ($do_tag ne "N")) { die "invalid tag option $do_tag\n"; } + if (($do_build ne "Y") && ($do_build ne "N")) { die "invalid tag option $do_build\n"; } + if (($do_dist ne "Y") && ($do_dist ne "N")) { die "invalid tag option $do_dist\n"; } + if (($do_update ne "Y") && ($do_update ne "N")) { die "invalid tag option $do_update\n"; } + + # print "module: $cvsname, branchtag: $branchtag, branchver: $branchver "; + # print "tag: $do_tag, build: $do_build, dist: $do_dist, update: $do_update\n"; + + push @mode, $mode; + push @cvsname, $cvsname; + push @branchtag, $branchtag; + push @branchver, $branchver; + } +} + +sub usage { + print STDERR "USAGE: psdist [options] (distribution]\n"; + print STDERR " : -tag (dev) : set tags on cvs HEAD based on distribution table (requires -tag)\n"; + print STDERR " : -tag (rev) : set tags on branch based on distribution table\n"; + print STDERR " : -tag (branch) : create branch tags based on distribution table (requires -tag)\n\n"; + + print STDERR " : -update (tags) : update this tree from cvs to match distribution tags\n"; + print STDERR " : -update (head) : update this tree from cvs to match distribution tags\n\n"; + + print STDERR " : -dist (cvs) : check out a distribution and leave CVS directories in place\n"; + print STDERR " : -dist (tree) : check out a distribution and leave a clean tree\n"; + print STDERR " : -dist (tarball) : check out a distribution and make a tarball\n"; + print STDERR " : -head : use the cvs HEAD for distribution checkout (requires -dist)\n\n"; + + print STDERR " : -module : perform action only on the specified module\n"; + print STDERR " : -list : list valid distributions \n"; + print STDERR " : -diff : show the difference between the distribution and current cvs HEAD\n\n"; + exit 2; +} + Index: /branches/rel-1-1/psconfig/psperlmods =================================================================== --- /branches/rel-1-1/psconfig/psperlmods (revision 12167) +++ /branches/rel-1-1/psconfig/psperlmods (revision 12167) @@ -0,0 +1,102 @@ +#!/usr/bin/env perl + +$version = ""; +$check = 0; +@tARGV = (); +for (; @ARGV > 0; ) { + if ($ARGV[0] eq "-version") { + $version = $ARGV[1]; + shift; shift; next; + } + if ($ARGV[0] eq "-check") { + $check = 1; + shift; next; + } + if ($ARGV[0] eq "-h") { &usage (); } + if ($ARGV[0] eq "-help") { &usage (); } + if ($ARGV[0] eq "--help") { &usage (); } + @tARGV = (@tARGV, $ARGV[0]); + shift; +} +@ARGV = @tARGV; +if ( @ARGV != 0) { &usage (); } + +# load the perl module list +$file = "tagsets/ipp-extperl.dst"; +open (FILE, $file) || die "ERROR: can't open perl module list: $file\n"; +@list = ; +close (FILE); + +# set the psconfig version: +if ("$version" eq "") { + $version = $ENV{'PSVERSION'}; +} +if ("$version" eq "") { + $version = "default"; +} + +print "version: $version\n"; + +$prefix = `csh -f psconfig.sh --prefix $version`; chomp $prefix; +$perldir = `csh -f psconfig.sh --perldir $version`; chomp $perldir; +$homedir = `pwd`; chomp $homedir; + +print "prefix: $prefix\n"; +print "perldir: $perldir\n"; +print "PERL5LIB: $ENV{'PERL5LIB'}\n"; + +foreach $line (@list) { + chop $line; + if ($line =~ m|^\s*$|) { next; } + if ($line =~ m|^\s*\#|) { next; } + + ($N, $module, $tarball, $prompts) = split (" ", $line); + + system ("ckmodule.pl $module"); + if ($? == 0) { + # print "$module: found\n"; + next; + } + + print "$module: missing\n"; + if ($check) { next; } + + # try to build the module from ../../extperl/Module.*.tar.gz + chdir "../../extperl"; + + print "extract $module from $tarball\n"; + vsystem ("tar xvzf $tarball"); + + ($tardir) = $tarball =~ m|(\S*).tar.gz|; + print "tardir: $tardir\n"; + + chdir $tardir; + + # build the MakeMaker makefile, setting the output directories + if ($prompts) { + @answers = split (",", $prompts); + open (PIPE, "|perl Makefile.PL PREFIX=$prefix LIB=$perldir"); + foreach $answer (@answers) { + print PIPE "$answer\n"; + } + close (PIPE); + } else { + vsystem ("perl Makefile.PL PREFIX=$prefix LIB=$perldir"); + } + + vsystem ("make < /dev/null"); + vsystem ("make install"); + + chdir $homedir; +} + +sub usage { + print STDERR "USAGE: ckperlmods [-version] [-check]\n"; + exit 2; +} + +sub vsystem { + print STDERR "@_\n"; + $status = system ("@_"); + $status; +} Index: /branches/rel-1-1/psconfig/tagsets/ipp-1.0.dist =================================================================== --- /branches/rel-1-1/psconfig/tagsets/ipp-1.0.dist (revision 12167) +++ /branches/rel-1-1/psconfig/tagsets/ipp-1.0.dist (revision 12167) @@ -0,0 +1,53 @@ +# necessary fields: +# |-- tag? +# ||-- build? +# |||-- package? +# ||||-- update? +# |||| +# |||| CVS module CVS branch tag CVS branch version +# |||| + NYNN Ohana + NNYY ohana.base base-1-5 -0 + NNYY libohana libohana-1-9 -0 + NNYY libfits libfits-1-7 -0 + NNYY libautocode libautocode-1-6 -0 + NNYY libdvo libdvo-1-4 -0 + NNYY libkapa libkapa-1-3 -0 + NNYY addstar addstar-1-8 -0 + NNYY delstar delstar-1-7 -0 + NNYY getstar getstar-1-3 -0 + NNYY kapa kapa-1-7 -0 + NNYY kii kii-1-7 -0 + NNYY relphot relphot-1-5 -0 + NNYY uniphot uniphot-1-5 -0 + NNYY opihi.base opihi-2-9 -0 + NNYY mana mana-1-7 -0 + NNYY dvo dvo-1-0 -0 + NNYY pantasks pantasks-1-0 -0 + NNYY pcontrol pcontrol-1-0 -0 + NNYY pclient pclient-1-0 -0 + NYYY psLib rel-1-0 -0 + NYYY psModules rel-1-0 -0 + YYYY psphot rel-0-8 -0 + YYYY psastro rel-0-8 -0 + YYYY ppStats rel-1-0 -0 + YYYY ppImage rel-1-0 -0 + YYYY ppNorm rel-1-0 -0 + YYYY ppMerge rel-1-0 -0 + YNYY pois rel-0-1 -0 + YNYY pswarp rel-0-1 -0 + YNYY ppStac rel-0-1 -0 + YYYY PS-IPP-Metadata-Config rel-1-0 -0 + YYYY PS-IPP-Config rel-1-0 -0 + YYYY ippScripts rel-1-0 -0 + YYYY glueforge rel-1-0 -0 + YYYY dbconfig rel-1-0 -0 + NYNN ippdb.src + YYYY ippconfig rel-1-0 -0 + YYYY ippTools rel-1-0 -0 + YYYY ippTasks rel-1-0 -0 + YYYY simtest rel-0-8 -0 + YNYY psconfig rel-1-0 -0 + YNYY ippMonitor rel-1-0 -0 + +# there are externally required perl modules (see README?) Index: /branches/rel-1-1/psconfig/tagsets/ipp-1.0.perl =================================================================== --- /branches/rel-1-1/psconfig/tagsets/ipp-1.0.perl (revision 12167) +++ /branches/rel-1-1/psconfig/tagsets/ipp-1.0.perl (revision 12167) @@ -0,0 +1,59 @@ +# NN Name Tarball Optional Responses + 00 Module::Build Module-Build-0.2806.tar.gz + 01 ExtUtils::MakeMaker ExtUtils-MakeMaker-6.31.tar.gz + 02 Params::Validate Params-Validate-0.87.tar.gz + 03 DateTime::TimeZone DateTime-TimeZone-0.59.tar.gz + 04 DateTime::Locale DateTime-Locale-0.33.tar.gz + 05 Time::Local Time-Local-1.17.tar.gz + 06 DateTime DateTime-0.36.tar.gz + 07 MIME::Base64 MIME-Base64-3.07.tar.gz + 08 IO::Compress::Base IO-Compress-Base-2.003.tar.gz + 09 Compress::Raw::Zlib Compress-Raw-Zlib-2.003.tar.gz + 10 Class::Factory::Util Class-Factory-Util-1.6.tar.gz + 11 DateTime::Format::Strptime DateTime-Format-Strptime-1.0700.tar.gz + 12 Net::Domain::TLD Net-Domain-TLD-1.65.tar.gz + 13 Sub::Uplevel Sub-Uplevel-0.14.tar.gz + 14 HTML::Tagset HTML-Tagset-3.10.tar.gz + 15 Digest Digest-1.15.tar.gz + 16 IO::Compress::Zlib::Extra IO-Compress-Zlib-2.003.tar.gz + 17 version version-0.70.tar.gz + 18 Text::Balanced Text-Balanced-v2.0.0.tar.gz + 19 DateTime::Format::Builder DateTime-Format-Builder-0.7807.tar.gz + 20 ExtUtils::Manifest ExtUtils-Manifest-1.51.tar.gz + 21 URI URI-1.35.tar.gz + 22 Data::Validate::Domain Data-Validate-Domain-0.05.tar.gz + 23 Test::Exception Test-Exception-0.24.tar.gz + 24 Tree::DAG_Node Tree-DAG_Node-1.05.tar.gz + 25 Array::Compare Array-Compare-1.13.tar.gz + 26 HTML::Parser HTML-Parser-3.56.tar.gz + 27 Digest::MD5 Digest-MD5-2.36.tar.gz + 28 Net::FTP libnet-1.19.tar.gz + 29 Compress::Zlib Compress-Zlib-2.003.tar.gz + 30 Locale::Maketext::Simple Locale-Maketext-Simple-0.18.tar.gz + 31 Parse::RecDescent Parse-RecDescent-1.94.tar.gz + 32 Class::Accessor Class-Accessor-0.30.tar.gz + 33 DateTime::Format::ISO8601 DateTime-Format-ISO8601-0.0403.tar.gz + 34 CGI CGI.pm-3.25.tar.gz + 35 Test::Cmd Test-Cmd-1.05.tar.gz + 36 Net::HTTPServer Net-HTTPServer-1.1.1.tar.gz + 37 LWP libwww-perl-5.805.tar.gz + 38 Digest::MD5::File Digest-MD5-File-0.05.tar.gz + 39 File::Temp File-Temp-0.18.tar.gz + 40 Data::Validate::URI Data-Validate-URI-0.01.tar.gz + 41 Test::Warn Test-Warn-0.08.tar.gz + 42 YAML YAML-0.62.tar.gz y + 43 Module::Load Module-Load-0.10.tar.gz + 44 Params::Check Params-Check-0.25.tar.gz + 45 Template Template-Toolkit-2.16.tar.gz n,n + 46 Statistics::Descriptive Statistics-Descriptive-2.6.tar.gz + 47 Storable Storable-2.15.tar.gz + 48 IO::String IO-String-1.08.tar.gz + 49 Date::Parse TimeDate-1.16.tar.gz + 50 Digest::SHA1 Digest-SHA1-2.11.tar.gz + 51 DB_File DB_File-1.814.tar.gz + 52 File::NFSLock File-NFSLock-1.20.tar.gz + 53 Heap Heap-0.71.tar.gz + 54 Module::Load::Conditional Module-Load-Conditional-0.16.tar.gz + 55 IPC::Run IPC-Run-0.80.tar.gz + 56 Cache Cache-2.04.tar.gz + 57 IPC::Cmd IPC-Cmd-0.36.tar.gz Index: /branches/rel-1-1/psconfig/tagsets/ipp-1.1.dist =================================================================== --- /branches/rel-1-1/psconfig/tagsets/ipp-1.1.dist (revision 12167) +++ /branches/rel-1-1/psconfig/tagsets/ipp-1.1.dist (revision 12167) @@ -0,0 +1,55 @@ +# necessary fields: +# |-- tag? +# ||-- build? +# |||-- package? +# ||||-- update? +# |||| +# |||| CVS module CVS branch tag CVS branch version +# |||| + NYNN Ohana + NNYY ohana.base base-1-5 -1 + NNYY libohana libohana-1-9 -1 + NNYY libfits libfits-1-7 -1 + NNYY libautocode libautocode-1-6 -1 + NNYY libdvo libdvo-1-4 -1 + NNYY libkapa libkapa-1-3 -1 + NNYY addstar addstar-1-8 -1 + NNYY delstar delstar-1-7 -1 + NNYY getstar getstar-1-3 -1 + NNYY kapa kapa-1-7 -1 + NNYY kii kii-1-7 -1 + NNYY relphot relphot-1-5 -1 + NNYY uniphot uniphot-1-5 -1 + NNYY opihi.base opihi-2-9 -1 + NNYY mana mana-1-7 -1 + NNYY dvo dvo-1-1 -1 + NNYY pantasks pantasks-1-1 -1 + NNYY pcontrol pcontrol-1-1 -1 + NNYY pclient pclient-1-1 -1 + NYYY psLib rel-1-1 -0 + NYYY psModules rel-1-1 -0 + YYYY psphot rel-0-9 -0 + YYYY psastro rel-0-9 -0 + YYYY ppStats rel-1-1 -0 + YYYY ppImage rel-1-1 -0 + YYYY ppNorm rel-1-1 -0 + YYYY ppMerge rel-1-1 -0 + NYYY pedestal rel-1-1 -0 + NYYY dvoTools rel-1-0 -0 + YNYY pois rel-0-1 -1 + YNYY pswarp rel-0-1 -1 + YNYY ppStac rel-0-1 -1 + YYYY PS-IPP-Metadata-Config rel-1-1 -0 + YYYY PS-IPP-Config rel-1-1 -0 + YYYY ippScripts rel-1-1 -0 + YYYY glueforge rel-1 -01 + NYYY dbconfig rel-1_1 _13 + NYNN ippdb.src + YYYY ippconfig rel-1-1 -0 + NYYY ippTools rel-1_1 _13 + YYYY ippTasks rel-1-1 -0 + YYYY simtest rel-0-9 -0 + YNYY psconfig rel-1-1 -0 + YNYY ippMonitor rel-1-1 -0 + +# there are externally required perl modules (see INSTALL) Index: /branches/rel-1-1/psconfig/tagsets/ipp-1.1.perl =================================================================== --- /branches/rel-1-1/psconfig/tagsets/ipp-1.1.perl (revision 12167) +++ /branches/rel-1-1/psconfig/tagsets/ipp-1.1.perl (revision 12167) @@ -0,0 +1,59 @@ +# NN Name Tarball Optional Responses + 00 Module::Build Module-Build-0.2806.tar.gz + 01 ExtUtils::MakeMaker ExtUtils-MakeMaker-6.31.tar.gz + 02 Params::Validate Params-Validate-0.87.tar.gz + 03 DateTime::TimeZone DateTime-TimeZone-0.59.tar.gz + 04 DateTime::Locale DateTime-Locale-0.33.tar.gz + 05 Time::Local Time-Local-1.17.tar.gz + 06 DateTime DateTime-0.36.tar.gz + 07 MIME::Base64 MIME-Base64-3.07.tar.gz + 08 IO::Compress::Base IO-Compress-Base-2.003.tar.gz + 09 Compress::Raw::Zlib Compress-Raw-Zlib-2.003.tar.gz + 10 Class::Factory::Util Class-Factory-Util-1.6.tar.gz + 11 DateTime::Format::Strptime DateTime-Format-Strptime-1.0700.tar.gz + 12 Net::Domain::TLD Net-Domain-TLD-1.65.tar.gz + 13 Sub::Uplevel Sub-Uplevel-0.14.tar.gz + 14 HTML::Tagset HTML-Tagset-3.10.tar.gz + 15 Digest Digest-1.15.tar.gz + 16 IO::Compress::Zlib::Extra IO-Compress-Zlib-2.003.tar.gz + 17 version version-0.70.tar.gz + 18 Text::Balanced Text-Balanced-v2.0.0.tar.gz + 19 DateTime::Format::Builder DateTime-Format-Builder-0.7807.tar.gz + 20 ExtUtils::Manifest ExtUtils-Manifest-1.51.tar.gz + 21 URI URI-1.35.tar.gz + 22 Data::Validate::Domain Data-Validate-Domain-0.05.tar.gz + 23 Test::Exception Test-Exception-0.24.tar.gz + 24 Tree::DAG_Node Tree-DAG_Node-1.05.tar.gz + 25 Array::Compare Array-Compare-1.13.tar.gz + 26 HTML::Parser HTML-Parser-3.56.tar.gz + 27 Digest::MD5 Digest-MD5-2.36.tar.gz + 28 Net::FTP libnet-1.19.tar.gz + 29 Compress::Zlib Compress-Zlib-2.003.tar.gz + 30 Locale::Maketext::Simple Locale-Maketext-Simple-0.18.tar.gz + 31 Parse::RecDescent Parse-RecDescent-1.94.tar.gz + 32 Class::Accessor Class-Accessor-0.30.tar.gz + 33 DateTime::Format::ISO8601 DateTime-Format-ISO8601-0.0403.tar.gz + 34 CGI CGI.pm-3.25.tar.gz + 35 Test::Cmd Test-Cmd-1.05.tar.gz + 36 Net::HTTPServer Net-HTTPServer-1.1.1.tar.gz + 37 LWP libwww-perl-5.805.tar.gz + 38 Digest::MD5::File Digest-MD5-File-0.05.tar.gz + 39 File::Temp File-Temp-0.18.tar.gz + 40 Data::Validate::URI Data-Validate-URI-0.01.tar.gz + 41 Test::Warn Test-Warn-0.08.tar.gz + 42 YAML YAML-0.62.tar.gz y + 43 Module::Load Module-Load-0.10.tar.gz + 44 Params::Check Params-Check-0.25.tar.gz + 45 Template Template-Toolkit-2.16.tar.gz n,n + 46 Statistics::Descriptive Statistics-Descriptive-2.6.tar.gz + 47 Storable Storable-2.15.tar.gz + 48 IO::String IO-String-1.08.tar.gz + 49 Date::Parse TimeDate-1.16.tar.gz + 50 Digest::SHA1 Digest-SHA1-2.11.tar.gz + 51 DB_File DB_File-1.814.tar.gz + 52 File::NFSLock File-NFSLock-1.20.tar.gz + 53 Heap Heap-0.71.tar.gz + 54 Module::Load::Conditional Module-Load-Conditional-0.16.tar.gz + 55 IPC::Run IPC-Run-0.80.tar.gz + 56 Cache Cache-2.04.tar.gz + 57 IPC::Cmd IPC-Cmd-0.36.tar.gz Index: /branches/rel-1-1/psconfig/tagsets/ippHead =================================================================== --- /branches/rel-1-1/psconfig/tagsets/ippHead (revision 12167) +++ /branches/rel-1-1/psconfig/tagsets/ippHead (revision 12167) @@ -0,0 +1,21 @@ +../mhpcc/psLib:HEAD +../mhpcc/psModule:HEAD + +psphot:HEAD +psastro:HEAD +ppStats:HEAD +ppImage:HEAD +ppNorm:HEAD +ppMerge:HEAD + +# these are the required perl modules from IPP +# there are externally required perl modules (see README?) +PS-IPP-Metadata-Config:HEAD +PS-IPP-Config:HEAD +ippScripts:HEAD + +glueforge:HEAD +dbconfig:HEAD +ippdb.src:NONE +ippTools:HEAD +ippTasks:HEAD