Index: /branches/eam_branches/20091201/ippTasks/dqstats.pro =================================================================== --- /branches/eam_branches/20091201/ippTasks/dqstats.pro (revision 26860) +++ /branches/eam_branches/20091201/ippTasks/dqstats.pro (revision 26860) @@ -0,0 +1,239 @@ +## dqstats.pro : globals and support macros : -*- sh -*- +## this file contains the tasks for running the dqstats analysis stage +## these tasks use the book dqstatsPendingExp + +# test for required global variables +check.globals + +book init dqstatsPendingExp + +macro dqstats.status + book listbook dqstatsPendingExp +end + +macro dqstats.reset + book init dqstatsPendingExp +end + +macro dqstats.on + task dqstats.load + active true + end + task dqstats.run + active true + end + task dqstats.revert + active true + end +end + +macro dqstats.off + task dqstats.load + active false + end + task dqstats.run + active false + end + task dqstats.revert + active false + end +end + +# this variable will cycle through the known database names +$dqstats_DB = 0 +$dqstats_revert_DB = 0 + +# select images ready for dqstats analysis +# new entries are added to dqstatsPendingExp +# skip already-present entries +task dqstats.load + host local + + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + stdout NULL + stderr $LOGDIR/dqstats.log + + task.exec + if ($LABEL:n == 0) break + $run = dqstatstool -pendingbundle + if ($DB:n == 0) + option DEFAULT + else + # save the DB name for the exit tasks + option $DB:$dqstats_DB + $run = $run -dbname $DB:$dqstats_DB + $dqstats_DB ++ + if ($dqstats_DB >= $DB:n) set dqstats_DB = 0 + end + add_poll_args run + add_poll_labels run + command $run + end + + # success + task.exit 0 + # convert 'stdout' to book format + ipptool2book stdout dqstatsPendingExp -key dqstats_id -uniq -setword dbname $options:0 -setword pantaskState INIT + if ($VERBOSE > 2) + book listbook dqstatsPendingExp + end + + # delete existing entries in the appropriate pantaskStates + process_cleanup dqstatsPendingExp + end + + # default exit status + task.exit default + showcommand failure + end + + task.exit crash + showcommand crash + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end + +# run the dqstats script on pending exposures +task dqstats.run + periods -poll $RUNPOLL + periods -exec $RUNEXEC + periods -timeout 10 + + ## we want only a single outstanding dqstats job. + host local + npending 1 + + task.exec + book npages dqstatsPendingExp -var N + if ($N == 0) break + if ($NETWORK == 0) break + + # look for new images in dqstatsPendingExp (pantaskState == INIT) + book getpage dqstatsPendingExp 0 -var pageName -key pantaskState INIT + if ("$pageName" == "NULL") break + + book setword dqstatsPendingExp $pageName pantaskState RUN + book getword dqstatsPendingExp $pageName camera -var CAMERA + book getword dqstatsPendingExp $pageName exp_tag -var EXP_TAG + book getword dqstatsPendingExp $pageName dqstats_id -var DQSTATS_ID +# book getword dqstatsPendingExp $pageName camroot -var CAMROOT +# book getword dqstatsPendingExp $pageName workdir -var WORKDIR_TEMPLATE +# book getword dqstatsPendingExp $pageName reduction -var REDUCTION +# book getword dqstatsPendingExp $pageName dvodb -var DVODB +# book getword dqstatsPendingExp $pageName image_only -var IMAGE_ONLY + book getword dqstatsPendingExp $pageName dbname -var DBNAME + + # specify choice of remote host based on camera and chip (class_id) + # set.host.for.camera $CAMERA FPA + + # set the WORKDIR variable +# set.workdir.by.camera $CAMERA FPA $WORKDIR_TEMPLATE $default_host WORKDIR + + # notes on how this works: + # -- raw workdir examples: + # file://data/@HOST@.0/gpc1/20080130 + # neb:///@HOST@-vol0/gpc1/20080130 (need to supply volname?, or are we re-defining this each time?) + # -- out workdir examples: + # file://data/ipp004.0/gpc1/20080130 + # neb:///ipp004-vol0/gpc1/20080130 + + ## generate outroot specific to this exposure (& chip) + # Uri's need to be standardized when the run is created. +# sprintf outroot "%s/%s/%s.dqstats.%s" $WORKDIR $EXP_TAG $EXP_TAG $DQSTATS_ID + + stdout $LOGDIR/dqstats.log + stderr $LOGDIR/dqstats.log + + $run = dqstats_bundle.pl --exp_tag $EXP_TAG --dqstats_id $DQSTATS_ID --camera GPC1 --redirect-output +# if ("$REDUCTION" != "NULL") +# $run = $run --reduction $REDUCTION +# end +# if ("$IMAGE_ONLY" == "T") +# $run = $run --image-only +# end + + + add_standard_args run + + # save the pageName for future reference below + options $pageName + + # create the command line + if ($VERBOSE > 1) + echo command $run + end + command $run + end + + # success + task.exit default + process_exit dqstatsPendingExp $options:0 $JOB_STATUS + end + + # locked list + task.exit crash + showcommand crash + echo "hostname: $JOB_HOSTNAME" + book setword dqstatsPendingExp $options:0 pantaskState CRASH + end + + # operation times out? + task.exit timeout + showcommand timeout + book setword dqstatsPendingExp $options:0 pantaskState TIMEOUT + end +end + +task dqstats.revert + host local + + periods -poll 5.0 + periods -exec 60.0 + periods -timeout 120.0 + npending 1 + + stdout NULL + stderr $LOGDIR/revert.log + + task.exec + if ($LABEL:n == 0) break + $run = dqstatstool -revertrun + if ($DB:n == 0) + option DEFAULT + else + # save the DB name for the exit tasks + option $DB:$dqstats_revert_DB + $run = $run -dbname $DB:$dqstats_revert_DB + $dqstats_revert_DB ++ + if ($dqstats_revert_DB >= $DB:n) set dqstats_revert_DB = 0 + end + add_poll_labels run + command $run + end + + # success + task.exit 0 + end + + # locked list + task.exit default + showcommand failure + end + + task.exit crash + showcommand crash + end + + # operation times out? + task.exit timeout + showcommand timeout + end +end Index: /branches/eam_branches/20091201/ippTasks/nightly_stacks.pro =================================================================== --- /branches/eam_branches/20091201/ippTasks/nightly_stacks.pro (revision 26860) +++ /branches/eam_branches/20091201/ippTasks/nightly_stacks.pro (revision 26860) @@ -0,0 +1,710 @@ +## nightly_stacks.pro : -*- sh -*- + +check.globals + +macro nightly.stacks.on + ns.initday.on + ns.registration.on + ns.burntool.on + ns.chips.on + ns.stacks.on +end + +macro nightly.stacks.off + ns.initday.off + ns.registration.off + ns.burntool.off + ns.chips.off + ns.stacks.off +end + +macro ns.initday.on + task ns.initday.load + active true + end +end + +macro ns.registration.on + task ns.registration.load + active true + end +end + +macro ns.burntool.on + task ns.burntool.load + active true + end + task ns.burntool.run + active true + end +end + +macro ns.chips.on + task ns.chips.load + active true + end + task ns.chips.run + active true + end +end + +macro ns.stacks.on + task ns.stacks.load + active true + end + task ns.stacks.run + active true + end +end + +macro ns.initday.off + task ns.initday.load + active false + end +end + +macro ns.registration.off + task ns.registration.load + active false + end +end + +macro ns.burntool.off + task ns.burntool.load + active false + end + task ns.burntool.run + active false + end +end + +macro ns.chips.off + task ns.chips.load + active false + end + task ns.chips.run + active false + end +end + +macro ns.stacks.off + task ns.stacks.load + active false + end + task ns.stacks.run + active false + end +end + +$ns_regPAGE = 0 +$ns_burnPAGE = 0 +$ns_RburnPAGE = 0 +$ns_RburnCELL = 0 +$ns_chipPAGE = 0 +$ns_RchipPAGE = 0 +$ns_stackPAGE = 0 +$ns_RstackPAGE = 0 + +book init nsData +# +# Macros to control the book. +# +macro ns.add.date + book newpage nsData $1 + book setword nsData $1 nsState NEW +end + +macro ns.show.dates + book npages nsData -var Npages + for i 0 $Npages + book getpage nsData $i -var date + book getword nsData $date nsState -var state + echo $date $state + end +end + +macro ns.del.date + book delpage nsData $1 +end + +macro ns.set.date + book setword nsData $1 nsState $2 +end + + + +# +# Start a new date to work on +# +task ns.initday.load + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + trange 16:30:00 17:30:00 -nmax 1 + npending 1 + + task.exec + $today = `date +%Y-%m-%d` + book newpage nsData $today + book setword nsData $today nsState NEW + + command echo $today +# command automate_stacks.pl --clean_old --date $today + end + + task.exit 0 + # nothing to do here? + end + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Check to see if registration is complete +# +task ns.registration.load + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.registration.log + + book getpage nsData $ns_regPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.registration.load: " $ns_regPAGE $date $ns_STATE $Npages + end + + $ns_regPAGE ++ + if ($ns_regPAGE >= $Npages) set ns_regPAGE = 0 + option $date + + if ("$ns_STATE" != "NEW") break + $run = automate_stacks.pl --check_registration --date $date + command $run + end + + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 + ipptool2book stdout nsData -uniq -key date + + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Check to see if the chips have been properly burntooled and are ready for queueing +# +task ns.chips.load + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.chips.log + + book getpage nsData $ns_chipPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.chips.load: " $ns_chipPAGE $date $ns_STATE $Npages + end + + $ns_chipPAGE ++ + if ($ns_chipPAGE >= $Npages) set ns_chipPAGE = 0 + option $date + + if (("$ns_STATE" != "REGISTERED")&&("$ns_STATE" != "BURNING")) break + $run = automate_stacks.pl --check_chips --date $date + + if ("$ns_STATE" == "BURNING") + $run = $run --isburning + end + command $run + end + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 + ipptool2book stdout nsData -uniq -key date + + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Check to see if the chips have been properly burntooled and are ready for queueing +# +task ns.chips.run + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.chips.log + + book getpage nsData $ns_RchipPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.chips.run: " $ns_RchipPAGE $date $ns_STATE $Npages + end + + $ns_RchipPAGE ++ + if ($ns_RchipPAGE >= $Npages) set ns_RchipPAGE = 0 + option $date + + if ("$ns_STATE" != "QUEUECHIPS") break + $run = automate_stacks.pl --queue_chips --date $date + command $run + end + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 + ipptool2book stdout nsData -uniq -key date + + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + + +# +# Check to see if the warps are finished +# +task ns.stacks.load + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.stacks.log + + book getpage nsData $ns_stackPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.stacks.load: " $ns_stackPAGE $date $ns_STATE $Npages + end + + $ns_stackPAGE ++ + if ($ns_stackPAGE >= $Npages) set ns_stackPAGE = 0 + option $date + + if ("$ns_STATE" != "TOWARP") break + $run = automate_stacks.pl --check_stacks --date $date + command $run + end + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 + ipptool2book stdout nsData -uniq -key date + + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Check to see if the warps are finished and so we can make stacks. +# +task ns.stacks.run + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.stacks.log + + book getpage nsData $ns_RstackPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.stacks.run: " $ns_RstackPAGE $date $ns_STATE $Npages + end + + $ns_RstackPAGE ++ + if ($ns_RstackPAGE >= $Npages) set ns_RstackPAGE = 0 + option $date + + if ("$ns_STATE" != "QUEUESTACKS") break + $run = automate_stacks.pl --queue_stacks --date $date + command $run + end + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 +# We've queued up stacking. We're done with this date, so don't reload the page. +# ipptool2book stdout nsData -uniq -key date + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Generate a list of date ranges that need to be processed with burntool +# +task ns.burntool.load + host local + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 30 + npending 1 + + task.exec + stdout NULL + stderr $LOGDIR/ns.burntool.log + + book getpage nsData $ns_burnPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.burntool.load: " $ns_burnPAGE $date $ns_STATE $Npages + end + + $ns_burnPAGE ++ + if ($ns_burnPAGE >= $Npages) set ns_burnPAGE = 0 + option $date + + if ("$ns_STATE" != "NEEDSBURNING") break + $run = automate_stacks.pl --define_burntool --date $date + command $run + end + # success + task.exit 0 +# convert 'stdout' to book format + book delpage nsData $options:0 + ipptool2book stdout nsData -uniq -key date + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + +# +# Magically run burntool on the data, based on the time ranges stored in our book. +# +task ns.burntool.run + periods -poll $LOADPOLL + periods -exec $LOADEXEC + periods -timeout 10800 + npending 20 + task.exec + stdout NULL + stderr $LOGDIR/ns.burntool.log + + book getpage nsData $ns_RburnPAGE -var date + book getword nsData $date nsState -var ns_STATE + book npages nsData -var Npages + + if ($VERBOSE > 5) + echo "ns.burntool.run: " $ns_RburnPAGE $date $ns_STATE $Npages + end + + $ns_RburnPAGE ++ + if ($ns_RburnPAGE >= $Npages) set ns_RburnPAGE = 0 + + if ("$ns_STATE" != "QUEUEBURNING") break + book getword nsData $date btN -var btN + book getword nsData $date btNCounter -var btNcounter + + if ($btNcounter > $btN) + book setword nsData $date nsState "BURNING" + break + end + + sprintf start_date_label "btBegin%d" $btNcounter + sprintf end_date_label "btEnd%d" $btNcounter + sprintf counter_label "btCounter%d" $btNcounter + + book getword nsData $date $start_date_label -var start_date + book getword nsData $date $end_date_label -var end_date + book getword nsData $date $counter_label -var chip_counter + + list word -split $hostmatch:$chip_counter + $class_id = $word:0 + $host = $word:1 + host $host + $logfile = "burntool_logs/$class_id.$start_date.log" + + $run = ipp_apply_burntool.pl --class_id $class_id --dateobs_begin $start_date --dateobs_end $end_date --dbname gpc1 --logfile $logfile + + echo "ns.burntool.run: " $date $btN $btNcounter $start_date $end_date $chip_counter $class_id $host $logfile $run + $chip_counter ++ + if ($chip_counter >= $hostmatch:n) + $chip_counter = 0 + $btNcounter ++ + end + $new_state = "QUEUEBURNING" + if ($btNcounter > $btN) + $new_state = "BURNING" + end + + echo "ns.burntool.run: " $date $btN $btNcounter $chip_counter $new_state + book setword nsData $date $counter_label $chip_counter + book setword nsData $date btNCounter $btNcounter + option $date $new_state + + command $run +# command /bin/true + end + # success + task.exit 0 +# convert 'stdout' to book format +# book delpage nsData $options:0 +# ipptool2book stdout nsData -uniq -key date + book setword nsData $options:0 nsState $options:1 + + if ($VERBOSE > 2) + book listbook nsData + end + end + + # locked list + task.exit default + showcommand failure + end + task.exit crash + showcommand crash + end + #operation times out? + task.exit timeout + showcommand timeout + end +end + + +# +# This is all burntool related stuff. +# + +macro burntool + if ($0 != 3) + echo "USAGE: burntool (dateobs_begin) (dateobs_end)" + break + end + + for i 0 $hostmatch:n + job -host $word:1 ipp_apply_burntool.pl --class_id $class_id --dateobs_begin $1 --dateobs_end $2 --dbname gpc1 --logfile $logfile + end +end +macro loadhosts + for i 0 $allhosts:n + controller host add $allhosts:$i + end +end + +# sorry this list is messy, it's supposed to be that way to try and keep to burntools from running on the same host at the same time. + +list hostmatch + XY01 ipp014 + XY03 ipp038 + XY05 ipp023 + XY10 ipp039 + XY12 ipp024 + XY15 ipp040 + XY17 ipp020 + XY21 ipp041 + XY23 ipp042 + XY25 ipp043 + XY27 ipp028 + XY31 ipp044 + XY33 ipp029 + XY35 ipp045 + XY37 ipp030 + XY41 ipp046 + XY43 ipp031 + XY45 ipp047 + XY47 ipp032 + XY51 ipp048 + XY53 ipp033 + XY55 ipp049 + XY57 ipp034 + XY61 ipp050 + XY63 ipp035 + XY65 ipp051 + XY67 ipp036 + XY72 ipp052 + XY74 ipp015 + XY76 ipp053 + XY02 ipp014 + XY04 ipp038 + XY06 ipp023 + XY11 ipp039 + XY13 ipp024 + XY14 ipp040 + XY16 ipp020 + XY20 ipp041 + XY22 ipp042 + XY24 ipp043 + XY26 ipp028 + XY30 ipp044 + XY32 ipp029 + XY34 ipp045 + XY36 ipp030 + XY40 ipp046 + XY42 ipp031 + XY44 ipp047 + XY46 ipp032 + XY50 ipp048 + XY52 ipp033 + XY54 ipp049 + XY56 ipp034 + XY60 ipp050 + XY62 ipp035 + XY64 ipp051 + XY66 ipp036 + XY71 ipp052 + XY73 ipp015 + XY75 ipp053 +end + +list allhosts + ipp043 + ipp014 + ipp015 + ipp023 + ipp024 + ipp020 + ipp028 + ipp029 + ipp030 + ipp031 + ipp032 + ipp033 + ipp034 + ipp035 + ipp036 + ipp038 + ipp039 + ipp040 + ipp041 + ipp042 + ipp044 + ipp045 + ipp046 + ipp047 + ipp048 + ipp049 + ipp050 + ipp051 + ipp052 + ipp053 +end Index: /branches/eam_branches/20091201/ippconfig/recipes/dqStatsTool.config =================================================================== --- /branches/eam_branches/20091201/ippconfig/recipes/dqStatsTool.config (revision 26860) +++ /branches/eam_branches/20091201/ippconfig/recipes/dqStatsTool.config (revision 26860) @@ -0,0 +1,37 @@ +BUNDLE_SIZE S32 1000 # Number of exposures to bundle together +# BUNDLE_AGE ? "2 hours"? # I'd like this to be a way to tell if we can just skip ahead, since the bundle is "old" Don't know how, though. + + +STATS.COLUMNS METADATA # Column definitions for what goes into a bundle + +C1 METADATA + TABLE STR rawExp + ENTRY STR ra + DATATYPE STR PS_DATA_F64 + COLNAME STR RA +END + +C2 METADATA + TABLE STR rawExp + ENTRY STR decl + DATATYPE STR PS_DATA_F64 + COLNAME STR DEC +END + +C3 METADATA + TABLE STR camProcessedExp + ENTRY STR iq_m2 + DATATYPE STR PS_DATA_F32 + COLNAME STR IQ_M2 +END + +C4 METADATA + TABLE STR camProcessedExp + ENTRY STR iq_fwhm_major + DATATYPE STR PS_DATA_F32 + COLNAME STR IQ_FWHM_MAJOR +END + + +END + Index: /branches/eam_branches/20091201/ippconfig/recipes/nightly_science.config =================================================================== --- /branches/eam_branches/20091201/ippconfig/recipes/nightly_science.config (revision 26860) +++ /branches/eam_branches/20091201/ippconfig/recipes/nightly_science.config (revision 26860) @@ -0,0 +1,106 @@ +RETENTION_TIME U16 9000 + +FILTERS MULTI +FILTERS STR g.00000 +FILTERS STR r.00000 +FILTERS STR i.00000 +FILTERS STR z.00000 +FILTERS STR y.00000 + +TARGETS MULTI +TARGETS METADATA + NAME STR CMB + TESS STR RINGS.V0 + COMMENT STR CMB_Cold% + STACKABLE BOOL FALSE +END +TARGETS METADATA + NAME STR M31 + TESS STR M31 + COMMENT STR M31% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD01 + TESS STR MD01 + COMMENT STR MD01% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD02 + TESS STR MD02 + COMMENT STR MD02% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD03 + TESS STR MD03 + COMMENT STR MD03% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD04 + TESS STR MD04 + COMMENT STR MD04% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD05 + TESS STR MD05 + COMMENT STR MD05% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD06 + TESS STR MD06 + COMMENT STR MD06% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD07 + TESS STR MD07 + COMMENT STR MD07% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD08 + TESS STR MD08 + COMMENT STR MD08% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD09 + TESS STR MD09 + COMMENT STR MD09% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR MD10 + TESS STR MD10 + COMMENT STR MD10% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR STS + TESS STR STS + COMMENT STR Stellar Transit% + STACKABLE BOOL TRUE +END +TARGETS METADATA + NAME STR SVS + TESS STR RINGS.V0 + COMMENT STR SVS% + STACKABLE BOOL FALSE +END +TARGETS METADATA + NAME STR SweetSpot + TESS STR RINGS.V0 + COMMENT STR Sweetspot% + STACKABLE BOOL FALSE +END +TARGETS METADATA + NAME STR ThreePi + TESS STR RINGS.V0 + COMMENT STR ThreePi% + STACKABLE BOOL FALSE +END Index: /branches/eam_branches/20091201/magic/remove/Doxyfile.in =================================================================== --- /branches/eam_branches/20091201/magic/remove/Doxyfile.in (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/Doxyfile.in (revision 26860) @@ -0,0 +1,1310 @@ +# Doxyfile 1.5.4 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project +# +# All text after a hash (#) is considered a comment and will be ignored +# The format is: +# TAG = value [value, ...] +# For lists items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (" ") + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# This tag specifies the encoding used for all characters in the config file that +# follow. The default is UTF-8 which is also the encoding used for all text before +# the first occurrence of this tag. Doxygen uses libiconv (or the iconv built into +# libc) for the transcoding. See http://www.gnu.org/software/libiconv for the list of +# possible encodings. + +DOXYFILE_ENCODING = UTF-8 + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded +# by quotes) that should identify the project. + +PROJECT_NAME = streaksremove + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. +# This could be handy for archiving the generated documentation or +# if some version control system is used. + +PROJECT_NUMBER = ipp-2.7.dev + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) +# base path where the generated documentation will be put. +# If a relative path is entered, it will be relative to the location +# where doxygen was started. If left blank the current directory will be used. + +OUTPUT_DIRECTORY = ./docs + +# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create +# 4096 sub-directories (in 2 levels) under the output directory of each output +# format and will distribute the generated files over these directories. +# Enabling this option can be useful when feeding doxygen a huge amount of +# source files, where putting all generated files in the same directory would +# otherwise cause performance problems for the file system. + +CREATE_SUBDIRS = NO + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# The default language is English, other supported languages are: +# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, +# Croatian, Czech, Danish, Dutch, Finnish, French, German, Greek, Hungarian, +# Italian, Japanese, Japanese-en (Japanese with English messages), Korean, +# Korean-en, Lithuanian, Norwegian, Polish, Portuguese, Romanian, Russian, +# Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian. + +OUTPUT_LANGUAGE = English + +# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will +# include brief member descriptions after the members that are listed in +# the file and class documentation (similar to JavaDoc). +# Set to NO to disable this. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend +# the brief description of a member or function before the detailed description. +# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. + +REPEAT_BRIEF = YES + +# This tag implements a quasi-intelligent brief description abbreviator +# that is used to form the text in various listings. Each string +# in this list, if found as the leading text of the brief description, will be +# stripped from the text and the result after processing the whole list, is +# used as the annotated text. Otherwise, the brief description is used as-is. +# If left blank, the following values are used ("$name" is automatically +# replaced with the name of the entity): "The $name class" "The $name widget" +# "The $name file" "is" "provides" "specifies" "contains" +# "represents" "a" "an" "the" + +ABBREVIATE_BRIEF = + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# Doxygen will generate a detailed section even if there is only a brief +# description. + +ALWAYS_DETAILED_SEC = NO + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all +# inherited members of a class in the documentation of that class as if those +# members were ordinary class members. Constructors, destructors and assignment +# operators of the base classes will not be shown. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full +# path before files name in the file list and in the header files. If set +# to NO the shortest path that makes the file name unique will be used. + +FULL_PATH_NAMES = NO + +# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag +# can be used to strip a user-defined part of the path. Stripping is +# only done if one of the specified strings matches the left-hand part of +# the path. The tag can be used to show relative paths in the file list. +# If left blank the directory from which doxygen is run is used as the +# path to strip. + +STRIP_FROM_PATH = + +# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of +# the path mentioned in the documentation of a class, which tells +# the reader which header file to include in order to use a class. +# If left blank only the name of the header file containing the class +# definition is used. Otherwise one should specify the include paths that +# are normally passed to the compiler using the -I flag. + +STRIP_FROM_INC_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter +# (but less readable) file names. This can be useful is your file systems +# doesn't support long names like on DOS, Mac, or CD-ROM. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen +# will interpret the first line (until the first dot) of a JavaDoc-style +# comment as the brief description. If set to NO, the JavaDoc +# comments will behave just like regular Qt-style comments +# (thus requiring an explicit @brief command for a brief description.) + +JAVADOC_AUTOBRIEF = NO + +# If the QT_AUTOBRIEF tag is set to YES then Doxygen will +# interpret the first line (until the first dot) of a Qt-style +# comment as the brief description. If set to NO, the comments +# will behave just like regular Qt-style comments (thus requiring +# an explicit \brief command for a brief description.) + +QT_AUTOBRIEF = NO + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen +# treat a multi-line C++ special comment block (i.e. a block of //! or /// +# comments) as a brief description. This used to be the default behaviour. +# The new default is to treat a multi-line C++ comment block as a detailed +# description. Set this tag to YES if you prefer the old behaviour instead. + +MULTILINE_CPP_IS_BRIEF = NO + +# If the DETAILS_AT_TOP tag is set to YES then Doxygen +# will output the detailed description near the top, like JavaDoc. +# If set to NO, the detailed description appears after the member +# documentation. + +DETAILS_AT_TOP = NO + +# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented +# member inherits the documentation from any documented member that it +# re-implements. + +INHERIT_DOCS = YES + +# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce +# a new page for each member. If set to NO, the documentation of a member will +# be part of the file/class/namespace that contains it. + +SEPARATE_MEMBER_PAGES = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. +# Doxygen uses this value to replace tabs by spaces in code fragments. + +TAB_SIZE = 4 + +# This tag can be used to specify a number of aliases that acts +# as commands in the documentation. An alias has the form "name=value". +# For example adding "sideeffect=\par Side Effects:\n" will allow you to +# put the command \sideeffect (or @sideeffect) in the documentation, which +# will result in a user-defined paragraph with heading "Side Effects:". +# You can put \n's in the value part of an alias to insert newlines. + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C +# sources only. Doxygen will then generate output that is more tailored for C. +# For instance, some of the names that are used will be different. The list +# of all members will be omitted, etc. + +OPTIMIZE_OUTPUT_FOR_C = NO + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java +# sources only. Doxygen will then generate output that is more tailored for Java. +# For instance, namespaces will be presented as packages, qualified scopes +# will look different, etc. + +OPTIMIZE_OUTPUT_JAVA = NO + +# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want to +# include (a tag file for) the STL sources as input, then you should +# set this tag to YES in order to let doxygen match functions declarations and +# definitions whose arguments contain STL classes (e.g. func(std::string); v.s. +# func(std::string) {}). This also make the inheritance and collaboration +# diagrams that involve STL classes more complete and accurate. + +BUILTIN_STL_SUPPORT = NO + +# If you use Microsoft's C++/CLI language, you should set this option to YES to +# enable parsing support. + +CPP_CLI_SUPPORT = NO + +# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. +# Doxygen will parse them like normal C++ but will assume all classes use public +# instead of private inheritance when no explicit protection keyword is present. + +SIP_SUPPORT = NO + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES, then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. + +DISTRIBUTE_GROUP_DOC = NO + +# Set the SUBGROUPING tag to YES (the default) to allow class member groups of +# the same type (for instance a group of public functions) to be put as a +# subgroup of that type (e.g. under the Public Functions section). Set it to +# NO to prevent subgrouping. Alternatively, this can be done per class using +# the \nosubgrouping command. + +SUBGROUPING = YES + +# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct (or union) is +# documented as struct with the name of the typedef. So +# typedef struct TypeS {} TypeT, will appear in the documentation as a struct +# with name TypeT. When disabled the typedef will appear as a member of a file, +# namespace, or class. And the struct will be named TypeS. This can typically +# be useful for C code where the coding convention is that all structs are +# typedef'ed and only the typedef is referenced never the struct's name. + +TYPEDEF_HIDES_STRUCT = NO + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in +# documentation are documented, even if no documentation was available. +# Private class members and static file members will be hidden unless +# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES + +EXTRACT_ALL = NO + +# If the EXTRACT_PRIVATE tag is set to YES all private members of a class +# will be included in the documentation. + +EXTRACT_PRIVATE = NO + +# If the EXTRACT_STATIC tag is set to YES all static members of a file +# will be included in the documentation. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) +# defined locally in source files will be included in the documentation. +# If set to NO only classes defined in header files are included. + +EXTRACT_LOCAL_CLASSES = YES + +# This flag is only useful for Objective-C code. When set to YES local +# methods, which are defined in the implementation section but not in +# the interface are included in the documentation. +# If set to NO (the default) only methods in the interface are included. + +EXTRACT_LOCAL_METHODS = NO + +# If this flag is set to YES, the members of anonymous namespaces will be extracted +# and appear in the documentation as a namespace called 'anonymous_namespace{file}', +# where file will be replaced with the base name of the file that contains the anonymous +# namespace. By default anonymous namespace are hidden. + +EXTRACT_ANON_NSPACES = NO + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all +# undocumented members of documented classes, files or namespaces. +# If set to NO (the default) these members will be included in the +# various overviews, but no documentation section is generated. +# This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. +# If set to NO (the default) these classes will be included in the various +# overviews. This option has no effect if EXTRACT_ALL is enabled. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all +# friend (class|struct|union) declarations. +# If set to NO (the default) these declarations will be included in the +# documentation. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any +# documentation blocks found inside the body of a function. +# If set to NO (the default) these blocks will be appended to the +# function's detailed documentation block. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation +# that is typed after a \internal command is included. If the tag is set +# to NO (the default) then the documentation will be excluded. +# Set it to YES to include the internal documentation. + +INTERNAL_DOCS = NO + +# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate +# file names in lower-case letters. If set to YES upper-case letters are also +# allowed. This is useful if you have classes or files whose names only differ +# in case and if your file system supports case sensitive file names. Windows +# and Mac users are advised to set this option to NO. + +CASE_SENSE_NAMES = YES + +# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen +# will show members with their full class and namespace scopes in the +# documentation. If set to YES the scope will be hidden. + +HIDE_SCOPE_NAMES = NO + +# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen +# will put a list of the files that are included by a file in the documentation +# of that file. + +SHOW_INCLUDE_FILES = YES + +# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] +# is inserted in the documentation for inline members. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen +# will sort the (detailed) documentation of file and class members +# alphabetically by member name. If set to NO the members will appear in +# declaration order. + +SORT_MEMBER_DOCS = YES + +# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the +# brief documentation of file, namespace and class members alphabetically +# by member name. If set to NO (the default) the members will appear in +# declaration order. + +SORT_BRIEF_DOCS = NO + +# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be +# sorted by fully-qualified names, including namespaces. If set to +# NO (the default), the class list will be sorted only by class name, +# not including the namespace part. +# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. +# Note: This option applies only to the class list, not to the +# alphabetical list. + +SORT_BY_SCOPE_NAME = NO + +# The GENERATE_TODOLIST tag can be used to enable (YES) or +# disable (NO) the todo list. This list is created by putting \todo +# commands in the documentation. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or +# disable (NO) the test list. This list is created by putting \test +# commands in the documentation. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or +# disable (NO) the bug list. This list is created by putting \bug +# commands in the documentation. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or +# disable (NO) the deprecated list. This list is created by putting +# \deprecated commands in the documentation. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional +# documentation sections, marked by \if sectionname ... \endif. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines +# the initial value of a variable or define consists of for it to appear in +# the documentation. If the initializer consists of more lines than specified +# here it will be hidden. Use a value of 0 to hide initializers completely. +# The appearance of the initializer of individual variables and defines in the +# documentation can be controlled using \showinitializer or \hideinitializer +# command in the documentation regardless of this setting. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated +# at the bottom of the documentation of classes and structs. If set to YES the +# list will mention the files that were used to generate the documentation. + +SHOW_USED_FILES = YES + +# If the sources in your project are distributed over multiple directories +# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy +# in the documentation. The default is NO. + +SHOW_DIRECTORIES = YES + +# The FILE_VERSION_FILTER tag can be used to specify a program or script that +# doxygen should invoke to get the current version for each file (typically from the +# version control system). Doxygen will invoke the program by executing (via +# popen()) the command , where is the value of +# the FILE_VERSION_FILTER tag, and is the name of an input file +# provided by doxygen. Whatever the program writes to standard output +# is used as the file version. See the manual for examples. + +FILE_VERSION_FILTER = + +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated +# by doxygen. Possible values are YES and NO. If left blank NO is used. + +QUIET = NO + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated by doxygen. Possible values are YES and NO. If left blank +# NO is used. + +WARNINGS = YES + +# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings +# for undocumented members. If EXTRACT_ALL is set to YES then this flag will +# automatically be disabled. + +WARN_IF_UNDOCUMENTED = YES + +# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some +# parameters in a documented function, or documenting parameters that +# don't exist or using markup commands wrongly. + +WARN_IF_DOC_ERROR = YES + +# This WARN_NO_PARAMDOC option can be abled to get warnings for +# functions that are documented, but have no documentation for their parameters +# or return value. If set to NO (the default) doxygen will only warn about +# wrong or incomplete parameter documentation, but not about the absence of +# documentation. + +WARN_NO_PARAMDOC = NO + +# The WARN_FORMAT tag determines the format of the warning messages that +# doxygen can produce. The string should contain the $file, $line, and $text +# tags, which will be replaced by the file and line number from which the +# warning originated and the warning text. Optionally the format may contain +# $version, which will be replaced by the version of the file (if it could +# be obtained via FILE_VERSION_FILTER) + +WARN_FORMAT = "$file:$line: $text " + +# The WARN_LOGFILE tag can be used to specify a file to which warning +# and error messages should be written. If left blank the output is written +# to stderr. + +WARN_LOGFILE = + +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag can be used to specify the files and/or directories that contain +# documented source files. You may enter file names like "myfile.cpp" or +# directories like "/usr/src/myproject". Separate the files or directories +# with spaces. + +INPUT = ./src + +# This tag can be used to specify the character encoding of the source files that +# doxygen parses. Internally doxygen uses the UTF-8 encoding, which is also the default +# input encoding. Doxygen uses libiconv (or the iconv built into libc) for the transcoding. +# See http://www.gnu.org/software/libiconv for the list of possible encodings. + +INPUT_ENCODING = UTF-8 + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank the following patterns are tested: +# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx +# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90 + +FILE_PATTERNS = *.h + +# The RECURSIVE tag can be used to turn specify whether or not subdirectories +# should be searched for input files as well. Possible values are YES and NO. +# If left blank NO is used. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used select whether or not files or +# directories that are symbolic links (a Unix filesystem feature) are excluded +# from the input. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. Note that the wildcards are matched +# against the file with absolute path, so to exclude all test directories +# for example use the pattern */test/* + +EXCLUDE_PATTERNS = + +# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names +# (namespaces, classes, functions, etc.) that should be excluded from the output. +# The symbol name can be a fully qualified name, a word, or if the wildcard * is used, +# a substring. Examples: ANamespace, AClass, AClass::ANamespace, ANamespace::*Test + +EXCLUDE_SYMBOLS = + +# The EXAMPLE_PATH tag can be used to specify one or more files or +# directories that contain example code fragments that are included (see +# the \include command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp +# and *.h) to filter out the source-files in the directories. If left +# blank all files are included. + +EXAMPLE_PATTERNS = + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude +# commands irrespective of the value of the RECURSIVE tag. +# Possible values are YES and NO. If left blank NO is used. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or +# directories that contain image that are included in the documentation (see +# the \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command , where +# is the value of the INPUT_FILTER tag, and is the name of an +# input file. Doxygen will then use the output that the filter program writes +# to standard output. If FILTER_PATTERNS is specified, this tag will be +# ignored. + +INPUT_FILTER = + +# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern +# basis. Doxygen will compare the file name with each pattern and apply the +# filter if there is a match. The filters are a list of the form: +# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further +# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER +# is applied to all files. + +FILTER_PATTERNS = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will be used to filter the input files when producing source +# files to browse (i.e. when SOURCE_BROWSER is set to YES). + +FILTER_SOURCE_FILES = NO + +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will +# be generated. Documented entities will be cross-referenced with these sources. +# Note: To get rid of all source code in the generated output, make sure also +# VERBATIM_HEADERS is set to NO. If you have enabled CALL_GRAPH or CALLER_GRAPH +# then you must also enable this option. If you don't then doxygen will produce +# a warning and turn it on anyway + +SOURCE_BROWSER = NO + +# Setting the INLINE_SOURCES tag to YES will include the body +# of functions and classes directly in the documentation. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct +# doxygen to hide any special comment blocks from generated source code +# fragments. Normal C and C++ comments will always remain visible. + +STRIP_CODE_COMMENTS = YES + +# If the REFERENCED_BY_RELATION tag is set to YES (the default) +# then for each documented function all documented +# functions referencing it will be listed. + +REFERENCED_BY_RELATION = YES + +# If the REFERENCES_RELATION tag is set to YES (the default) +# then for each documented function all documented entities +# called/used by that function will be listed. + +REFERENCES_RELATION = YES + +# If the REFERENCES_LINK_SOURCE tag is set to YES (the default) +# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from +# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will +# link to the source code. Otherwise they will link to the documentstion. + +REFERENCES_LINK_SOURCE = YES + +# If the USE_HTAGS tag is set to YES then the references to source code +# will point to the HTML generated by the htags(1) tool instead of doxygen +# built-in source browser. The htags tool is part of GNU's global source +# tagging system (see http://www.gnu.org/software/global/global.html). You +# will need version 4.8.6 or higher. + +USE_HTAGS = NO + +# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen +# will generate a verbatim copy of the header file for each class for +# which an include is specified. Set to NO to disable this. + +VERBATIM_HEADERS = YES + +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index +# of all compounds will be generated. Enable this if the project +# contains a lot of classes, structs, unions or interfaces. + +ALPHABETICAL_INDEX = NO + +# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then +# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns +# in which this list will be split (can be a number in the range [1..20]) + +COLS_IN_ALPHA_INDEX = 5 + +# In case all classes in a project start with a common prefix, all +# classes will be put under the same header in the alphabetical index. +# The IGNORE_PREFIX tag can be used to specify one or more prefixes that +# should be ignored while generating the index headers. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES (the default) Doxygen will +# generate HTML output. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `html' will be used as the default path. + +HTML_OUTPUT = html + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for +# each generated HTML page (for example: .htm,.php,.asp). If it is left blank +# doxygen will generate files with .html extension. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a personal HTML header for +# each generated HTML page. If it is left blank doxygen will generate a +# standard header. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a personal HTML footer for +# each generated HTML page. If it is left blank doxygen will generate a +# standard footer. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading +# style sheet that is used by each HTML page. It can be used to +# fine-tune the look of the HTML output. If the tag is left blank doxygen +# will generate a default style sheet. Note that doxygen will try to copy +# the style sheet file to the HTML output directory, so don't put your own +# stylesheet in the HTML output directory as well, or it will be erased! + +HTML_STYLESHEET = + +# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, +# files or namespaces will be aligned in HTML using tables. If set to +# NO a bullet list will be used. + +HTML_ALIGN_MEMBERS = YES + +# If the GENERATE_HTMLHELP tag is set to YES, additional index files +# will be generated that can be used as input for tools like the +# Microsoft HTML help workshop to generate a compressed HTML help file (.chm) +# of the generated HTML documentation. + +GENERATE_HTMLHELP = NO + +# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML +# documentation will contain sections that can be hidden and shown after the +# page has loaded. For this to work a browser that supports +# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox +# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari). + +HTML_DYNAMIC_SECTIONS = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can +# be used to specify the file name of the resulting .chm file. You +# can add a path in front of the file if the result should not be +# written to the html output directory. + +CHM_FILE = + +# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can +# be used to specify the location (absolute path including file name) of +# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run +# the HTML help compiler on the generated index.hhp. + +HHC_LOCATION = + +# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag +# controls if a separate .chi index file is generated (YES) or that +# it should be included in the master .chm file (NO). + +GENERATE_CHI = NO + +# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag +# controls whether a binary table of contents is generated (YES) or a +# normal table of contents (NO) in the .chm file. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members +# to the contents of the HTML help documentation and to the tree view. + +TOC_EXPAND = NO + +# The DISABLE_INDEX tag can be used to turn on/off the condensed index at +# top of each HTML page. The value NO (the default) enables the index and +# the value YES disables it. + +DISABLE_INDEX = NO + +# This tag can be used to set the number of enum values (range [1..20]) +# that doxygen will group on one line in the generated HTML documentation. + +ENUM_VALUES_PER_LINE = 4 + +# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be +# generated containing a tree-like index structure (just like the one that +# is generated for HTML Help). For this to work a browser that supports +# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, +# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are +# probably better off using the HTML help feature. + +GENERATE_TREEVIEW = NO + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be +# used to set the initial width (in pixels) of the frame in which the tree +# is shown. + +TREEVIEW_WIDTH = 250 + +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- + +# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will +# generate Latex output. + +GENERATE_LATEX = NO + +# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `latex' will be used as the default path. + +LATEX_OUTPUT = latex + +# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be +# invoked. If left blank `latex' will be used as the default command name. + +LATEX_CMD_NAME = latex + +# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to +# generate index for LaTeX. If left blank `makeindex' will be used as the +# default command name. + +MAKEINDEX_CMD_NAME = makeindex + +# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact +# LaTeX documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_LATEX = NO + +# The PAPER_TYPE tag can be used to set the paper type that is used +# by the printer. Possible values are: a4, a4wide, letter, legal and +# executive. If left blank a4wide will be used. + +PAPER_TYPE = a4wide + +# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX +# packages that should be included in the LaTeX output. + +EXTRA_PACKAGES = + +# The LATEX_HEADER tag can be used to specify a personal LaTeX header for +# the generated latex document. The header should contain everything until +# the first chapter. If it is left blank doxygen will generate a +# standard header. Notice: only use this tag if you know what you are doing! + +LATEX_HEADER = + +# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated +# is prepared for conversion to pdf (using ps2pdf). The pdf file will +# contain links (just like the HTML output) instead of page references +# This makes the output suitable for online browsing using a pdf viewer. + +PDF_HYPERLINKS = NO + +# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of +# plain latex in the generated Makefile. Set this option to YES to get a +# higher quality PDF documentation. + +USE_PDFLATEX = NO + +# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. +# command to the generated LaTeX files. This will instruct LaTeX to keep +# running if errors occur, instead of asking the user for help. +# This option is also used when generating formulas in HTML. + +LATEX_BATCHMODE = NO + +# If LATEX_HIDE_INDICES is set to YES then doxygen will not +# include the index chapters (such as File Index, Compound Index, etc.) +# in the output. + +LATEX_HIDE_INDICES = NO + +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- + +# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output +# The RTF output is optimized for Word 97 and may not look very pretty with +# other RTF readers or editors. + +GENERATE_RTF = NO + +# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `rtf' will be used as the default path. + +RTF_OUTPUT = rtf + +# If the COMPACT_RTF tag is set to YES Doxygen generates more compact +# RTF documents. This may be useful for small projects and may help to +# save some trees in general. + +COMPACT_RTF = NO + +# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated +# will contain hyperlink fields. The RTF file will +# contain links (just like the HTML output) instead of page references. +# This makes the output suitable for online browsing using WORD or other +# programs which support those fields. +# Note: wordpad (write) and others do not support links. + +RTF_HYPERLINKS = NO + +# Load stylesheet definitions from file. Syntax is similar to doxygen's +# config file, i.e. a series of assignments. You only have to provide +# replacements, missing definitions are set to their default value. + +RTF_STYLESHEET_FILE = + +# Set optional variables used in the generation of an rtf document. +# Syntax is similar to doxygen's config file. + +RTF_EXTENSIONS_FILE = + +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- + +# If the GENERATE_MAN tag is set to YES (the default) Doxygen will +# generate man pages + +GENERATE_MAN = YES + +# The MAN_OUTPUT tag is used to specify where the man pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `man' will be used as the default path. + +MAN_OUTPUT = man + +# The MAN_EXTENSION tag determines the extension that is added to +# the generated man pages (default is the subroutine's section .3) + +MAN_EXTENSION = .3 + +# If the MAN_LINKS tag is set to YES and Doxygen generates man output, +# then it will generate one additional man file for each entity +# documented in the real man page(s). These additional files +# only source the real man page, but without them the man command +# would be unable to find the correct page. The default is NO. + +MAN_LINKS = NO + +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- + +# If the GENERATE_XML tag is set to YES Doxygen will +# generate an XML file that captures the structure of +# the code including all documentation. + +GENERATE_XML = NO + +# The XML_OUTPUT tag is used to specify where the XML pages will be put. +# If a relative path is entered the value of OUTPUT_DIRECTORY will be +# put in front of it. If left blank `xml' will be used as the default path. + +XML_OUTPUT = xml + +# The XML_SCHEMA tag can be used to specify an XML schema, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_SCHEMA = + +# The XML_DTD tag can be used to specify an XML DTD, +# which can be used by a validating XML parser to check the +# syntax of the XML files. + +XML_DTD = + +# If the XML_PROGRAMLISTING tag is set to YES Doxygen will +# dump the program listings (including syntax highlighting +# and cross-referencing information) to the XML output. Note that +# enabling this will significantly increase the size of the XML output. + +XML_PROGRAMLISTING = YES + +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- + +# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will +# generate an AutoGen Definitions (see autogen.sf.net) file +# that captures the structure of the code including all +# documentation. Note that this feature is still experimental +# and incomplete at the moment. + +GENERATE_AUTOGEN_DEF = NO + +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- + +# If the GENERATE_PERLMOD tag is set to YES Doxygen will +# generate a Perl module file that captures the structure of +# the code including all documentation. Note that this +# feature is still experimental and incomplete at the +# moment. + +GENERATE_PERLMOD = NO + +# If the PERLMOD_LATEX tag is set to YES Doxygen will generate +# the necessary Makefile rules, Perl scripts and LaTeX code to be able +# to generate PDF and DVI output from the Perl module output. + +PERLMOD_LATEX = NO + +# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be +# nicely formatted so it can be parsed by a human reader. This is useful +# if you want to understand what is going on. On the other hand, if this +# tag is set to NO the size of the Perl module output will be much smaller +# and Perl will parse it just the same. + +PERLMOD_PRETTY = YES + +# The names of the make variables in the generated doxyrules.make file +# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. +# This is useful so different doxyrules.make files included by the same +# Makefile don't overwrite each other's variables. + +PERLMOD_MAKEVAR_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- + +# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will +# evaluate all C-preprocessor directives found in the sources and include +# files. + +ENABLE_PREPROCESSING = YES + +# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro +# names in the source code. If set to NO (the default) only conditional +# compilation will be performed. Macro expansion can be done in a controlled +# way by setting EXPAND_ONLY_PREDEF to YES. + +MACRO_EXPANSION = NO + +# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES +# then the macro expansion is limited to the macros specified with the +# PREDEFINED and EXPAND_AS_DEFINED tags. + +EXPAND_ONLY_PREDEF = NO + +# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files +# in the INCLUDE_PATH (see below) will be search if a #include is found. + +SEARCH_INCLUDES = YES + +# The INCLUDE_PATH tag can be used to specify one or more directories that +# contain include files that are not input files but should be processed by +# the preprocessor. + +INCLUDE_PATH = + +# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard +# patterns (like *.h and *.hpp) to filter out the header-files in the +# directories. If left blank, the patterns specified with FILE_PATTERNS will +# be used. + +INCLUDE_FILE_PATTERNS = + +# The PREDEFINED tag can be used to specify one or more macro names that +# are defined before the preprocessor is started (similar to the -D option of +# gcc). The argument of the tag is a list of macros of the form: name +# or name=definition (no spaces). If the definition and the = are +# omitted =1 is assumed. To prevent a macro definition from being +# undefined via #undef or recursively expanded use the := operator +# instead of the = operator. + +PREDEFINED = + +# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then +# this tag can be used to specify a list of macro names that should be expanded. +# The macro definition that is found in the sources will be used. +# Use the PREDEFINED tag if you want to use a different macro definition. + +EXPAND_AS_DEFINED = + +# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then +# doxygen's preprocessor will remove all function-like macros that are alone +# on a line, have an all uppercase name, and do not end with a semicolon. Such +# function macros are typically used for boiler-plate code, and will confuse +# the parser if not removed. + +SKIP_FUNCTION_MACROS = YES + +#--------------------------------------------------------------------------- +# Configuration::additions related to external references +#--------------------------------------------------------------------------- + +# The TAGFILES option can be used to specify one or more tagfiles. +# Optionally an initial location of the external documentation +# can be added for each tagfile. The format of a tag file without +# this location is as follows: +# TAGFILES = file1 file2 ... +# Adding location for the tag files is done as follows: +# TAGFILES = file1=loc1 "file2 = loc2" ... +# where "loc1" and "loc2" can be relative or absolute paths or +# URLs. If a location is present for each tag, the installdox tool +# does not have to be run to correct the links. +# Note that each tag file must have a unique name +# (where the name does NOT include the path) +# If a tag file is not located in the directory in which doxygen +# is run, you must also specify the path to the tagfile here. + +TAGFILES = + +# When a file name is specified after GENERATE_TAGFILE, doxygen will create +# a tag file that is based on the input files it reads. + +GENERATE_TAGFILE = + +# If the ALLEXTERNALS tag is set to YES all external classes will be listed +# in the class index. If set to NO only the inherited external classes +# will be listed. + +ALLEXTERNALS = NO + +# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed +# in the modules index. If set to NO, only the current project's groups will +# be listed. + +EXTERNAL_GROUPS = YES + +# The PERL_PATH should be the absolute path and name of the perl script +# interpreter (i.e. the result of `which perl'). + +PERL_PATH = /usr/bin/perl + +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- + +# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will +# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base +# or super classes. Setting the tag to NO turns the diagrams off. Note that +# this option is superseded by the HAVE_DOT option below. This is only a +# fallback. It is recommended to install and use dot, since it yields more +# powerful graphs. + +CLASS_DIAGRAMS = YES + +# You can define message sequence charts within doxygen comments using the \msc +# command. Doxygen will then run the mscgen tool (see http://www.mcternan.me.uk/mscgen/) to +# produce the chart and insert it in the documentation. The MSCGEN_PATH tag allows you to +# specify the directory where the mscgen tool resides. If left empty the tool is assumed to +# be found in the default search path. + +MSCGEN_PATH = + +# If set to YES, the inheritance and collaboration graphs will hide +# inheritance and usage relations if the target is undocumented +# or is not a class. + +HIDE_UNDOC_RELATIONS = YES + +# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is +# available from the path. This tool is part of Graphviz, a graph visualization +# toolkit from AT&T and Lucent Bell Labs. The other options in this section +# have no effect if this option is set to NO (the default) + +HAVE_DOT = NO + +# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect inheritance relations. Setting this tag to YES will force the +# the CLASS_DIAGRAMS tag to NO. + +CLASS_GRAPH = YES + +# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for each documented class showing the direct and +# indirect implementation dependencies (inheritance, containment, and +# class references variables) of the class with other documented classes. + +COLLABORATION_GRAPH = YES + +# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen +# will generate a graph for groups, showing the direct groups dependencies + +GROUP_GRAPHS = YES + +# If the UML_LOOK tag is set to YES doxygen will generate inheritance and +# collaboration diagrams in a style similar to the OMG's Unified Modeling +# Language. + +UML_LOOK = NO + +# If set to YES, the inheritance and collaboration graphs will show the +# relations between templates and their instances. + +TEMPLATE_RELATIONS = NO + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT +# tags are set to YES then doxygen will generate a graph for each documented +# file showing the direct and indirect include dependencies of the file with +# other documented files. + +INCLUDE_GRAPH = YES + +# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and +# HAVE_DOT tags are set to YES then doxygen will generate a graph for each +# documented header file showing the documented files that directly or +# indirectly include this file. + +INCLUDED_BY_GRAPH = YES + +# If the CALL_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will +# generate a call dependency graph for every global function or class method. +# Note that enabling this option will significantly increase the time of a run. +# So in most cases it will be better to enable call graphs for selected +# functions only using the \callgraph command. + +CALL_GRAPH = NO + +# If the CALLER_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will +# generate a caller dependency graph for every global function or class method. +# Note that enabling this option will significantly increase the time of a run. +# So in most cases it will be better to enable caller graphs for selected +# functions only using the \callergraph command. + +CALLER_GRAPH = NO + +# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen +# will graphical hierarchy of all classes instead of a textual one. + +GRAPHICAL_HIERARCHY = YES + +# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES +# then doxygen will show the dependencies a directory has on other directories +# in a graphical way. The dependency relations are determined by the #include +# relations between the files in the directories. + +DIRECTORY_GRAPH = YES + +# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images +# generated by dot. Possible values are png, jpg, or gif +# If left blank png will be used. + +DOT_IMAGE_FORMAT = png + +# The tag DOT_PATH can be used to specify the path where the dot tool can be +# found. If left blank, it is assumed the dot tool can be found in the path. + +DOT_PATH = + +# The DOTFILE_DIRS tag can be used to specify one or more directories that +# contain dot files that are included in the documentation (see the +# \dotfile command). + +DOTFILE_DIRS = + +# The MAX_DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of +# nodes that will be shown in the graph. If the number of nodes in a graph +# becomes larger than this value, doxygen will truncate the graph, which is +# visualized by representing a node as a red box. Note that doxygen if the number +# of direct children of the root node in a graph is already larger than +# MAX_DOT_GRAPH_NOTES then the graph will not be shown at all. Also note +# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH. + +DOT_GRAPH_MAX_NODES = 50 + +# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the +# graphs generated by dot. A depth value of 3 means that only nodes reachable +# from the root by following a path via at most 3 edges will be shown. Nodes +# that lay further from the root node will be omitted. Note that setting this +# option to 1 or 2 may greatly reduce the computation time needed for large +# code bases. Also note that the size of a graph can be further restricted by +# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction. + +MAX_DOT_GRAPH_DEPTH = 0 + +# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent +# background. This is disabled by default, which results in a white background. +# Warning: Depending on the platform used, enabling this option may lead to +# badly anti-aliased labels on the edges of a graph (i.e. they become hard to +# read). + +DOT_TRANSPARENT = NO + +# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output +# files in one run (i.e. multiple -o and -T options on the command line). This +# makes dot run faster, but since only newer versions of dot (>1.8.10) +# support this, this feature is disabled by default. + +DOT_MULTI_TARGETS = NO + +# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will +# generate a legend page explaining the meaning of the various boxes and +# arrows in the dot generated graphs. + +GENERATE_LEGEND = YES + +# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will +# remove the intermediate dot files that are used to generate +# the various graphs. + +DOT_CLEANUP = YES + +#--------------------------------------------------------------------------- +# Configuration::additions related to the search engine +#--------------------------------------------------------------------------- + +# The SEARCHENGINE tag specifies whether or not a search engine should be +# used. If set to NO the values of all tags below this one will be ignored. + +SEARCHENGINE = NO Index: /branches/eam_branches/20091201/magic/remove/Makefile.am =================================================================== --- /branches/eam_branches/20091201/magic/remove/Makefile.am (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/Makefile.am (revision 26860) @@ -0,0 +1,4 @@ +SUBDIRS = src + +CLEANFILES = *.pyc *~ core core.* + Index: /branches/eam_branches/20091201/magic/remove/autogen.sh =================================================================== --- /branches/eam_branches/20091201/magic/remove/autogen.sh (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/autogen.sh (revision 26860) @@ -0,0 +1,103 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +test -z "$srcdir" && srcdir=. + +ORIGDIR=`pwd` +cd $srcdir + +PROJECT=streaks +TEST_TYPE=-f +# change this to be a unique filename in the top level dir +FILE=autogen.sh + +DIE=0 + +LIBTOOLIZE=libtoolize +ACLOCAL="aclocal $ACLOCAL_FLAGS" +AUTOHEADER=autoheader +AUTOMAKE=automake +AUTOCONF=autoconf + +($LIBTOOLIZE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $LIBTOOLIZE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/libtool/" + DIE=1 +} + +($ACLOCAL --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $ACLOCAL installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOHEADER --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOHEADER installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +($AUTOMAKE --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOMAKE installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/automake/" + DIE=1 +} + +($AUTOCONF --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "You must have $AUTOCONF installed to compile $PROJECT." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at http://ftp.gnu.org/gnu/autoconf/" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +test $TEST_TYPE $FILE || { + echo "You must run this script in the top-level $PROJECT directory" + exit 1 +} + +if test -z "$*"; then + echo "I am going to run ./configure with no arguments - if you wish " + echo "to pass any to it, please specify them on the $0 command line." +fi + +$LIBTOOLIZE --copy --force || echo "$LIBTOOLIZE failed" +$ACLOCAL || echo "$ACLOCAL failed" +$AUTOHEADER || echo "$AUTOHEADER failed" +$AUTOMAKE --add-missing --force-missing --copy || echo "$AUTOMAKE failed" +$AUTOCONF || echo "$AUTOCONF failed" + +cd $ORIGDIR + +run_configure=true +for arg in $*; do + case $arg in + --no-configure) + run_configure=false + ;; + *) + ;; + esac +done + +if $run_configure; then + $srcdir/configure --enable-maintainer-mode "$@" + echo + echo "Now type 'make' to compile $PROJECT." +else + echo + echo "Now run 'configure' and 'make' to compile $PROJECT." +fi Index: /branches/eam_branches/20091201/magic/remove/configure.ac =================================================================== --- /branches/eam_branches/20091201/magic/remove/configure.ac (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/configure.ac (revision 26860) @@ -0,0 +1,43 @@ +dnl Process this file with autoconf to produce a configure script. +AC_PREREQ(2.61) + +AC_INIT([streaksremove], [0.9.0], [ipp-support@ifa.hawaii.edu]) +AC_CONFIG_SRCDIR([src]) + +AM_INIT_AUTOMAKE([1.6 foreign dist-bzip2]) +AM_CONFIG_HEADER([src/config.h]) +AM_MAINTAINER_MODE + +IPP_STDCFLAGS + +AC_LANG(C) +AC_GNU_SOURCE +AC_PROG_CC_C99 +AC_PROG_INSTALL +AC_PROG_LIBTOOL +AC_SYS_LARGEFILE + +dnl ------------------------------------------------------------ + +dnl ------------- psLib, psModules --------------- +PKG_CHECK_MODULES([PSLIB], [pslib >= 1.0.0]) +PKG_CHECK_MODULES([PSMODULE], [psmodules >= 1.0.0]) + +dnl Set CFLAGS for build +IPP_STDOPTS +CFLAGS="${CFLAGS=} -Wall -Werror" +echo "STREAKSREMOVE_CFLAGS: $STREAKSREMOVE_CFLAGS" +echo "STREAKSREMOVE_LIBS: $STREAKSREMOVE_LIBS" + +IPP_VERSION + +AC_SUBST([STREAKSREMOVE_CFLAGS]) +AC_SUBST([STREAKSREMOVE_LIBS]) + +AC_CONFIG_FILES([ + Makefile + src/Makefile + Doxyfile +]) + +AC_OUTPUT Index: /branches/eam_branches/20091201/magic/remove/src/Makefile.am =================================================================== --- /branches/eam_branches/20091201/magic/remove/src/Makefile.am (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/src/Makefile.am (revision 26860) @@ -0,0 +1,95 @@ +if HAVE_SVNVERSION +STREAKS_VERSION=`$(SVNVERSION) ..` +else +STREAKS_VERSION="UNKNOWN" +endif + +if HAVE_SVN +STREAKS_BRANCH=`$(SVN) info .. | $(SED) -n -e '/URL:/ h' -e '/Repository Root:/ { x; H; x; s|Repository Root: \(.*\)\nURL: \1\(.*\)|\2| ; s|^/|| ; s|/[a-zA-Z]*/src.*|| ; p }'` +STREAKS_SOURCE=`$(SVN) info | $(SED) -n -e 's/Repository UUID: // p'` +else +STREAKS_BRANCH="UNKNOWN" +STREAKS_SOURCE="UNKNOWN" +endif + +# Force recompilation of streaksVersion.c, since it gets the version information +streaksVersion.c: streaksVersionDefinitions.h +streaksVersionDefinitions.h: streaksVersionDefinitions.h.in FORCE + -$(RM) streaksVersionDefinitions.h + $(SED) -e "s|@STREAKS_VERSION@|\"$(STREAKS_VERSION)\"|" -e "s|@STREAKS_BRANCH@|\"$(STREAKS_BRANCH)\"|" -e "s|@STREAKS_SOURCE@|\"$(STREAKS_SOURCE)\"|" streaksVersionDefinitions.h.in > streaksVersionDefinitions.h +FORCE: ; + +bin_PROGRAMS = streaksremove streaksrelease streaksreplace streakscompare isdestreaked + +STREAKSREMOVE_CFLAGS=-DSTREAKS_COMPRESS_OUTPUT=1 + +STREAKSCFLAGS = $(STREAKSREMOVE_CFLAGS) $(PSMODULE_CFLAGS) $(PSLIB_CFLAGS) +STREAKSLDFLAGS = $(STREAKSREMOVE_LIBS) $(PSMODULE_LIBS) $(PSLIB_LIBS) + +streaksremove_CFLAGS = $(STREAKSCFLAGS) +streaksremove_LDFLAGS = $(STREAKSLDFLAGS) +streaksreplace_CFLAGS = $(STREAKSCFLAGS) +streaksreplace_LDFLAGS = $(STREAKSLDFLAGS) +streaksrelease_CFLAGS = $(STREAKSCFLAGS) +streaksrelease_LDFLAGS = $(STREAKSLDFLAGS) +streakscompare_CFLAGS = $(STREAKSCFLAGS) +streakscompare_LDFLAGS = $(STREAKSLDFLAGS) +isdestreaked_CFLAGS = $(STREAKSCFLAGS) +isdestreaked_LDFLAGS = $(STREAKSLDFLAGS) + +COMMON_SOURCES = \ + streaksio.c \ + streaksutil.c \ + streaksastrom.c \ + streaksVersion.c + +streaksremove_SOURCES = \ + streaksremove.c \ + streaksextern.c \ + diffedpixels.c \ + Line.c \ + $(COMMON_SOURCES) + +streaksrelease_SOURCES = \ + streaksrelease.c\ + streaksio.c \ + streaksutil.c \ + streaksastrom.c \ + streaksVersion.c + +streaksreplace_SOURCES = \ + streaksreplace.c\ + streaksio.c \ + streaksutil.c \ + streaksastrom.c \ + streaksVersion.c + +streakscompare_SOURCES = \ + streakscompare.c\ + streaksio.c \ + streaksutil.c \ + streaksastrom.c \ + streaksVersion.c + +isdestreaked_SOURCES = \ + isdestreaked.c\ + streaksio.c \ + streaksutil.c \ + streaksastrom.c \ + streaksVersion.c + +include_HEADERS = \ + streaksastrom.h \ + streaksextern.h \ + streaksio.h \ + streaksremove.h \ + streaksVersionDefinitions.h + +clean-local: + -rm -f TAGS + -rm -f tags + +# Tags for emacs and vi +tags: + etags `find . -name \*.[ch] -print` + ctags `find . -name \*.[ch] -print` Index: /branches/eam_branches/20091201/magic/remove/src/diffedpixels.c =================================================================== --- /branches/eam_branches/20091201/magic/remove/src/diffedpixels.c (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/src/diffedpixels.c (revision 26860) @@ -0,0 +1,332 @@ +#include "streaksremove.h" +#include "pmAstrometryWCS.h" + +// #define DEBUG_PRINT 1 + +static void addTouchedPixels(streakFiles *sf, psString fileName); +static void nameCorners(psPlane pt[4]); +static int xLeft(psPlane *pt, int y); +static int xRight(psPlane *pt, int y); + +// Examine the set of diff skycells and compute the pixels that were +// included in difference processing +bool +computeDiffedPixels(streakFiles *sf) +{ + bool status; + pmConfig *config = sf->config; + + psArray *skycells = psMetadataLookupPtr(&status, config->arguments, "SKYCELLS"); + if (skycells == NULL) { + return false; + } + + int n = psArrayLength(skycells); + + psRegion *bounds = pmChipPixels(sf->chip); + + int width = bounds->x1 - bounds->x0; + int height = bounds->y1 - bounds->y0; + + psFree(bounds); + + sf->diffedPixels = psImageAlloc(width, height, PS_TYPE_U8); + psImageInit(sf->diffedPixels, 0); + + for (int i=0; iinAstrom->fpa->toSky->type != PS_PROJ_DIS) { + pmAstromWriteWCS(header, sf->inAstrom->fpa, sf->chip, 0.001); + } + psFits *fits = psFitsOpen("diffedpixels.fits", "w"); + + psFitsWriteImage(fits, header, sf->diffedPixels, 0, NULL); + psFitsClose(fits); + psFree(header); + } + return true; +} + +static void +addTouchedPixels(streakFiles *sf, psString fileName) +{ + // read fits header + psFits *fits = psFitsOpen(fileName, "r"); + if (!fits) { + psError(PS_ERR_IO, false, "failed to open skycell file: %s", fileName); + streaksExit("", PS_EXIT_DATA_ERROR); + } + psMetadata *header = psFitsReadHeader(NULL, fits); + psFitsClose(fits); + if (!header) { + psError(PS_ERR_IO, false, "failed to read fixts header from skycell file: %s", fileName); + streaksExit("", PS_EXIT_DATA_ERROR); + } + // set up astrometry for conversion from skycell image to sky + pmAstromWCS *wcs = pmAstromWCSfromHeader(header); + if (!wcs) { + psError(PS_ERR_IO, false, "failed to read astrometry from skycell file: %s", fileName); + streaksExit("", PS_EXIT_DATA_ERROR); + } + int naxis1 = psMetadataLookupS32(NULL, header, "NAXIS1"); + int naxis2 = psMetadataLookupS32(NULL, header, "NAXIS2"); + + psFree(header); + + /* now set up our wrapper to the chip astrometry to apply to the whole chip */ + sf->astrom = streakSetAstrometry(sf->astrom, sf->stage, sf->inAstrom->fpa, sf->chip, false, NULL, + sf->diffedPixels->numCols, sf->diffedPixels->numRows); + + // convert corners of skycell to sky coordinates + // compute overlap with the chip using astrometry + psPlane pt[4]; + pt[0].x = 0; + pt[0].y = 0; + + pt[1].x = naxis1 - 1; + pt[1].y = 0; + + pt[2].x = naxis1 - 1; + pt[2].y = naxis2 - 1; + + pt[3].x = 0; + pt[3].y = naxis2 - 1; + + for (int i = 0; i < 4 ; i++ ) { + psSphere sky; + + // convert corner of skycell to sky coordinates + if (!pmAstromWCStoSky(&sky, wcs, &pt[i])) { + psErrorStackPrint(stderr, "failed to convert pt %d of %s to sky coords", i, fileName); + streaksExit("", PS_EXIT_DATA_ERROR); + } + strkPt p; + // convert to chip coordinates + if (!skyToCell(&p, sf->astrom, sky.r, sky.d)) { + psErrorStackPrint(stderr, "failed to convert pt %d of %s to sky coords", i, fileName); + streaksExit("", PS_EXIT_DATA_ERROR); + } + pt[i].x = p.x; + pt[i].y = p.y; + } + + psFree(wcs); + + // put the corners in the desired order (see comments below) + + nameCorners(pt); + psString type; + if (pt[0].y < pt[2].y ) { + type = "1"; + } else { + type = "2"; + } +#ifdef DEBUG_PRINT + printf("\nSKYCELL %s Type: %s\n", fileName, type); + for (int i=0; i<4; i++) { + printf("%f %f\n", pt[i].x, pt[i].y); + } +#endif + // Now set the touched pixels + int ymin = fmax(0, pt[1].y ); + int ymax = fmin(pt[3].y + 0.5, sf->diffedPixels->numRows - 1); +#if (DEBUG_PRINT > 1) + printf("\nymin: %d ymax: %d\n", ymin, ymax); +#endif + for (int y = ymin ; y <= ymax; y++) { + int xleft = xLeft(pt, y); + int xright = xRight(pt, y); + + if (xleft < 0) { + xleft = 0; + } + if (xleft > sf->diffedPixels->numCols) { + continue; + } + if (xright < 0) { + continue; + } + if (xright >= sf->diffedPixels->numCols) { + xright = sf->diffedPixels->numCols - 1; + } +#if (DEBUG_PRINT > 1) + printf(" y: %d xleft: %d xright: %d\n", y, xleft, xright); +#endif + + psU8 *rowPixels = sf->diffedPixels->data.U8[y]; + + int n = xright - xleft + 1; + if (n > 0) { + memset(&rowPixels[xleft], 255, n); + } + } +} + +// x as a function of y for the line between two points +// Note: the caller guarentees that the y's of the two points are different +static double xOfY(psPlane *pI, psPlane *pJ, int y) +{ + double m_inv = (double) (pJ->x - pI->x) / (double) (pJ->y - pI->y); + + double x = ((double) y - pI->y) * m_inv + (double) pI->x; + + return x; +} + +static int xLeft(psPlane *pt, int y) +{ + double x_d; + if (y < pt[0].y) { + // left boundary is the line from pt 0 to pt 1 + x_d = xOfY(&pt[0], &pt[1], y); + } else { + // left boundary is the line from pt 0 to pt 3 + x_d = xOfY(&pt[0], &pt[3], y); + } + return (int) (x_d + 0.5); +} + +static int xRight(psPlane *pt, int y) +{ + double x_d; + if (y < pt[2].y) { + // right boundary is the line from pt 1 to pt 2 + x_d = xOfY(&pt[1], &pt[2], y); + + } else { + // right boundary is the line from pt 2 to pt 3 + x_d = xOfY(&pt[2], &pt[3], y); + } + return (int) x_d; +} + +/* + * To compute the overlap of a quadrilateral with a set of + * points we transform the 4 corners to image coordinates + * and name the 4 points of the quad + pt 0 is left most (bottom most corner) + pt 1 is bottom most (right most corner) + pt 2 is right most (top most corner) + pt 3 is top most (left most corner) + +* Then we can divide the quad into 3 regions A B and C based +* on the y coordinate + +* (in the degenerate case of a rectangle aligned to the axes +* we only have 1 region) +* In each of the three regions A, B, and C the test for whether a +* point is contained in the quad on scanline y is simply + + x >= xleft(y) x < xright(y) + +* where xleft(y) and xright(y) are the bounding lines at the given +* y coordinate. + +The following diagrams show some examples. The 4 points are labeled 0 to 3 +The three regions are labeld A B and C, the boundaries between the regions +ocur at pt0.y and pt2.y + +Example 1 + + 3 + C + ---------------2 left boundary: line 0_1 y < pt0.y + B line 0_3 y >= pt0.y + 0-------------- + A right boundary: line 1_2 y < pt2.y + 1 line 2_3 y >= pt.y +************************** +Example 2 + 3 + C + 0---------------- + B + ----------------2 + A + 1 + +************************** +Example 3 + + 3 2 + + B + + 0 1 + +(region A and C are empty in the case where the points form a rectangle) +*/ + +/* + Name the corners + The following algorithm works for points that form a quadrilateral + I think it also works for the situation where 3 points are co-linear + and we have a triangle, but that isn't important for our purposes + +*/ + +static void +nameCorners(psPlane pt[4]) +{ + psPlane pt0, pt1, pt2, pt3; + + /* find pt0 the left most (bottom most) corner */ + int imin = 0; + int min = (int) pt[0].x; + int i; + for (i=1; i<4; i++) { + int x = pt[i].x; + if ((x < min) || + ((x == min) && (pt[i].y < pt[imin].y))) { + imin = i; + min = x; + } + } + // remve pt0 from the list + pt0 = pt[imin]; + for (i=imin; i<3; i++) { + pt[i] = pt[i+1]; + } + + // find the bottom most (right most) corner from the remaining 3 + imin = 0; + min = pt[0].y; + for (i=1; i<3; i++) { + int y = pt[i].y; + if ((y < min) || + ((y == min) && (pt[i].x > pt[imin].x)) ) { + imin = i; + min = y; + } + } + // remve pt1 from the list + pt1 = pt[imin]; + for (i=imin; i<3; i++) { + pt[i] = pt[i+1]; + } + + // now find the right most (top most) of the remaining 2 points + if ((pt[0].x > pt[1].x) || + ((pt[0].x == pt[1].x) && (pt[0].y > pt[1].y))) { + pt2 = pt[0]; + pt3 = pt[1]; + } else { + pt2 = pt[1]; + pt3 = pt[0]; + } + /* write the outputs */ + pt[0] = pt0; + pt[1] = pt1; + pt[2] = pt2; + pt[3] = pt3; +} Index: /branches/eam_branches/20091201/magic/remove/src/streaksVersion.c =================================================================== --- /branches/eam_branches/20091201/magic/remove/src/streaksVersion.c (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/src/streaksVersion.c (revision 26860) @@ -0,0 +1,113 @@ +/** @file streaksVersion.c + * + * @brief + * + * @ingroup streaks + * + * Copyright 2009 Institute for Astronomy, University of Hawaii + */ + +#include "streaksremove.h" +#include "streaksVersionDefinitions.h" + +#ifndef STREAKS_VERSION +#error "STREAKS_VERSION is not set" +#endif +#ifndef STREAKS_BRANCH +#error "STREAKS_BRANCH is not set" +#endif +#ifndef STREAKS_SOURCE +#error "STREAKS_SOURCE is not set" +#endif + +psString streaksVersion(void) +{ + char *value = NULL; + psStringAppend(&value, "%s@%s", STREAKS_BRANCH, STREAKS_VERSION); + return value; +} + +psString streaksSource(void) +{ + return psStringCopy(STREAKS_SOURCE); +} + +psString streaksVersionLong(void) +{ + psString version = streaksVersion(); // Version, to return + psString source = streaksSource(); // Source + + psStringPrepend(&version, "%s ", streaksProgram); + psStringAppend(&version, " from %s, built %s, %s", source, __DATE__, __TIME__); + psFree(source); + +#ifdef __OPTIMIZE__ + psStringAppend(&version, " optimised"); +#else + psStringAppend(&version, " unoptimised"); +#endif + + return version; +}; + +bool streaksVersionHeader(psMetadata *header) +{ + PS_ASSERT_METADATA_NON_NULL(header, false); + + psString version = streaksVersion(); // Software version + psString source = streaksSource(); // Software source + + psStringPrepend(&version, "%s version: ", streaksProgram); + psStringPrepend(&source, "%s source: ", streaksProgram); + + psMetadataAddStr(header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, NULL, version); + psMetadataAddStr(header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, NULL, source); + + psFree(version); + psFree(source); + + return true; +} + +bool streaksVersionHeaderFull(psMetadata *header) +{ + PS_ASSERT_METADATA_NON_NULL(header, false); + + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now + psString timeString = psTimeToISO(time); // The time in an ISO string + psFree(time); + psString history = NULL; // History string + psStringAppend(&history, "%s at %s", streaksProgram, timeString); + psFree(timeString); + psMetadataAddStr(header, PS_LIST_TAIL, "HISTORY", PS_META_DUPLICATE_OK, NULL, history); + psFree(history); + + psLibVersionHeader(header); + psModulesVersionHeader(header); + streaksVersionHeader(header); + + return true; +} + +void streaksVersionPrint(void) +{ + psTime *time = psTimeGetNow(PS_TIME_TAI); // The time now + psString timeString = psTimeToISO(time); // The time in an ISO string + psFree(time); + psLogMsg("streaks", PS_LOG_INFO, "%s at %s", streaksProgram, timeString); + psFree(timeString); + + psString pslib = psLibVersionLong();// psLib version + psString psmodules = psModulesVersionLong(); // psModules version + psString streaks = streaksVersionLong(); // streaks version + + psLogMsg("streaks", PS_LOG_INFO, "%s", pslib); + psLogMsg("streaks", PS_LOG_INFO, "%s", psmodules); + psLogMsg("streaks", PS_LOG_INFO, "%s", streaks); + + psFree(pslib); + psFree(psmodules); + psFree(streaks); + + return; +} Index: /branches/eam_branches/20091201/magic/remove/src/streaksVersionDefinitions.h.in =================================================================== --- /branches/eam_branches/20091201/magic/remove/src/streaksVersionDefinitions.h.in (revision 26860) +++ /branches/eam_branches/20091201/magic/remove/src/streaksVersionDefinitions.h.in (revision 26860) @@ -0,0 +1,8 @@ +#ifndef STREAKS_VERSION_DEFINITIONS_H +#define STREAKS_VERSION_DEFINITIONS_H + +#define STREAKS_VERSION @STREAKS_VERSION@ // SVN version +#define STREAKS_BRANCH @STREAKS_BRANCH@ // SVN branch +#define STREAKS_SOURCE @STREAKS_SOURCE@ // SVN source + +#endif Index: /branches/eam_branches/20091201/psconfig/tagsets/00_nebulous-1.0.perl =================================================================== --- /branches/eam_branches/20091201/psconfig/tagsets/00_nebulous-1.0.perl (revision 26860) +++ /branches/eam_branches/20091201/psconfig/tagsets/00_nebulous-1.0.perl (revision 26860) @@ -0,0 +1,87 @@ +# NN Name Tarball Version Optional Responses +# a Version of 0 is required if no specific version is desired + 00 Getopt::Long Getopt-Long-2.36.tar.gz 2.3 n + 00 Module::Build Module-Build-0.2806.tar.gz 0.2806 + 01 ExtUtils::MakeMaker ExtUtils-MakeMaker-6.54.tar.gz 0 + 02 Params::Validate Params-Validate-0.92.tar.gz 0.92 +# 02 Apache::Test Apache-Test-1.29.tar.gz 1.29 + 03 DateTime::TimeZone DateTime-TimeZone-0.59.tar.gz 0 + 04 DateTime::Locale DateTime-Locale-0.33.tar.gz 0 + 05 Time::Local Time-Local-1.17.tar.gz 0 + 06 DateTime DateTime-0.36.tar.gz 0 + 07 MIME::Base64 MIME-Base64-3.07.tar.gz 0 + 08 IO::Compress::Base IO-Compress-Base-2.003.tar.gz 0 + 09 Compress::Raw::Zlib Compress-Raw-Zlib-2.003.tar.gz 0 + 10 Class::Factory::Util Class-Factory-Util-1.6.tar.gz 0 + 11 DateTime::Format::Strptime DateTime-Format-Strptime-1.0700.tar.gz 0 + 12 Net::Domain::TLD Net-Domain-TLD-1.65.tar.gz 0 + 13 Sub::Uplevel Sub-Uplevel-0.14.tar.gz 0 + 14 HTML::Tagset HTML-Tagset-3.10.tar.gz 0 + 15 Digest Digest-1.15.tar.gz 0 + 16 IO::Compress::Zlib::Extra IO-Compress-Zlib-2.003.tar.gz 0 + 17 version version-0.70.tar.gz 0 + 18 Text::Balanced Text-Balanced-v2.0.0.tar.gz 0 + 19 DateTime::Format::Builder DateTime-Format-Builder-0.7807.tar.gz 0 + 20 ExtUtils::Manifest ExtUtils-Manifest-1.51.tar.gz 0 + 21 URI URI-1.35.tar.gz 1.30 + 22 Data::Validate::Domain Data-Validate-Domain-0.05.tar.gz 0 + 23 Test::Exception Test-Exception-0.24.tar.gz 0 + 24 Tree::DAG_Node Tree-DAG_Node-1.05.tar.gz 0 + 25 Array::Compare Array-Compare-1.13.tar.gz 0 + 26 HTML::Parser HTML-Parser-3.56.tar.gz 0 + 27 Digest::MD5 Digest-MD5-2.36.tar.gz 0 + 28 Net::FTP libnet-1.19.tar.gz 0 + 29 Compress::Zlib Compress-Zlib-2.003.tar.gz 0 + 30 Locale::Maketext::Simple Locale-Maketext-Simple-0.18.tar.gz 0 + 31 Parse::RecDescent Parse-RecDescent-1.94.tar.gz 1.94 + 32 Class::Accessor Class-Accessor-0.30.tar.gz 0.19 + 33 DateTime::Format::ISO8601 DateTime-Format-ISO8601-0.06.tar.gz 0.06 + 34 CGI CGI.pm-3.25.tar.gz 3 + 35 Test::Cmd Test-Cmd-1.05.tar.gz 1.05 + 36 Net::HTTPServer Net-HTTPServer-1.1.1.tar.gz 1.1.1 + 37 LWP libwww-perl-5.805.tar.gz 0 + 38 Digest::MD5::File Digest-MD5-File-0.05.tar.gz 0.03 + 39 File::Temp File-Temp-0.18.tar.gz 0.16 + 40 Data::Validate::URI Data-Validate-URI-0.01.tar.gz 0.01 + 41 Test::Warn Test-Warn-0.08.tar.gz 0 + 42 YAML YAML-0.62.tar.gz 0.58 y + 43 Module::Load Module-Load-0.10.tar.gz 0 + 44 Params::Check Params-Check-0.25.tar.gz 0 + 45 Template Template-Toolkit-2.16.tar.gz 0 n,n + 46 Statistics::Descriptive Statistics-Descriptive-2.6.tar.gz 2.6 + 47 Storable Storable-2.15.tar.gz 0 + 48 IO::String IO-String-1.08.tar.gz 0 + 49 Date::Parse TimeDate-1.16.tar.gz 0 + 50 Digest::SHA1 Digest-SHA1-2.11.tar.gz 0 + 51 DB_File DB_File-1.814.tar.gz 0 + 52 File::NFSLock File-NFSLock-1.20.tar.gz 0 + 53 Heap Heap-0.71.tar.gz 0 + 54 Module::Load::Conditional Module-Load-Conditional-0.16.tar.gz 0 + 55 IPC::Run IPC-Run-0.80.tar.gz 0 + 56 Cache Cache-2.04.tar.gz 0 + 57 IPC::Cmd IPC-Cmd-0.36.tar.gz 0.36 + 58 SOAP::Lite SOAP-Lite-0.69.tar.gz 0 yes,yes,no + 59 Log::Log4perl Log-Log4perl-1.10.tar.gz 0 + 61 Text::Glob Text-Glob-0.08.tar.gz 0.08 + 62 Number::Compare Number-Compare-0.01.tar.gz 0.01 + 63 File::Find::Rule File-Find-Rule-0.30.tar.gz 0.30 + 65 Test::More Test-Simple-0.74.tar.gz 0.49 + 66 Apache::DBI Apache-DBI-1.06.tar.gz 0 + 67 Apache2::SOAP Apache2-SOAP-0.72.tar.gz 0 + 68 Test::URI Test-URI-1.08.tar.gz 0 +# 69 Sys::Statistics::Linux::DiskUsage Sys-Statistics-Linux-0.26.tar.gz 0 + 70 Config::YAML Config-YAML-1.42.tar.gz 0 + 72 File::ExtAttr File-ExtAttr-1.07.tar.gz 0 + 73 DBI DBI-1.601.tar.gz 0 + 71 DBD::mysql DBD-mysql-4.006.tar.gz 0 + 74 Net::Server::Daemonize Net-Server-0.97.tar.gz 0.05 + 75 File::Path File-Path-2.04.tar.gz 0 + 76 File::Mountpoint File-Mountpoint-0.01.tar.gz 0.01 + 77 Filesys::Df Filesys-Df-0.92.tar.gz 0.92 + 78 SQL::Interp SQL-Interp-1.06.tar.gz 0 + 79 Log::Dispatch::Email::MailSend Log-Dispatch-2.22.tar.gz 0 + 80 Abstract::Meta::Class Abstract-Meta-Class-0.13.tar.gz 0 + 81 DBIx::Connection DBIx-Connection-0.13.tar.gz 0 + 82 Simple::SAX::Serializer Simple-SAX-Serializer-0.05.tar.gz 0 + 83 Test::Distribution Test-Distribution-2.00.tar.gz 0 + 84 Test::DBUnit Test-DBUnit-0.20.tar.gz 0.20 Index: /branches/eam_branches/20091201/tools/cam_inputs.pl =================================================================== --- /branches/eam_branches/20091201/tools/cam_inputs.pl (revision 26860) +++ /branches/eam_branches/20091201/tools/cam_inputs.pl (revision 26860) @@ -0,0 +1,97 @@ +#!/usr/bin/env perl + +# +# Copy camera stage inputs to the current directory +# + +use warnings; +use strict; + +use DBI; +use constant DB_SOCKET => '/var/run/mysqld/mysqld.sock'; # Socket for mysql +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); + +use constant SOURCES => '.cmf'; # Sources extension + + +my ($db_host, $db_name, $db_user, $db_pw); # Database details +my ($cam_id); # Camera run of interest +my ($sources); # Name for list of sources +my ($muggle); # No magicked inputs? + +GetOptions( + 'dbhost=s' => \$db_host, # Database host name + 'dbname=s' => \$db_name, # Database name + 'dbuser=s' => \$db_user, # Database user + 'dbpass=s' => \$db_pw, # Database p/w + 'cam_id=s' => \$cam_id, # Camera run identifier + 'sources=s' => \$sources, # File with sources + 'muggle' => \$muggle, # No magicked inputs? + ) or die "Unable to parse arguments.\n"; +die "Unknown option: @ARGV\n" if @ARGV; +die "Required options: --dbhost --dbname --dbuser --dbpass --cam_id\n" + unless defined $db_host + and defined $db_name + and defined $db_user + and defined $db_pw + and defined $cam_id; + +# Database connection +my $db = DBI->connect( "DBI:mysql:database=$db_name;host=$db_host;mysql_socket=" . DB_SOCKET(), + $db_user, + $db_pw, + { RaiseError => 1, AutoCommit => 1 } + ) or die "Unable to connect to database: $DBI::errstr"; + +# Query to run +my $sql = "SELECT" . + " chipProcessedImfile.path_base," . + " class_id" . + " FROM camRun" . + " JOIN chipProcessedImfile USING(chip_id)" . + " WHERE cam_id = $cam_id"; + +my $results = $db->selectall_arrayref( $sql ) or die "Unable to execute SQL: $DBI::errstr"; +$db->disconnect; + +my ($sourcesList); # Files to write to +open $sourcesList, "> $sources" if defined $sources; + +foreach my $row ( @$results ) { + my $path = $$row[0]; # Chip path + my $class_id = $$row[1]; # Class identifier + + $path .= '.' . $class_id; + + my $sourcesName = $path . SOURCES(); # Name of sources file + + $sourcesName = copy_file( $sourcesName ); + + print $sourcesList "$sourcesName\n" if defined $sources; + + +} + +close $sourcesList if defined $sources; + + +# Pau. + + +sub copy_file +{ + my $file = shift; # File to copy + + if (defined $muggle) { + my @file = split /\//, $file; + my $last = pop @file; + push @file, "SR_$last"; + $file = join '/', @file; + } + + my $source = `ipp_datapath.pl $file` or die "Unable to locate $file\n"; # Actual file + chomp $source; + my ($target) = $source =~ m|^.*[:/](.*)|; # Target name + !system "cp $source $target" or die "Unable to copy $source\n"; + return $target; +} Index: /branches/eam_branches/20091201/tools/neb-tail =================================================================== --- /branches/eam_branches/20091201/tools/neb-tail (revision 26860) +++ /branches/eam_branches/20091201/tools/neb-tail (revision 26860) @@ -0,0 +1,29 @@ +#!/usr/bin/perl -w + +#use it like this: +# +#neb-tail neb://ipp015.0/gpc1/magictest.20100127/MD04/skycell.101/MD04.skycell.101.dif.27980.log +# +# or +# neb-tail gpc1/magictest.20100127/MD04/skycell.101/MD04.skycell.101.dif.27980.log +# + +$file=$ARGV[0]; + + +@nebitems=`neb-locate --path --server http://nebulous.mhpcc.ipp.ifa.hawaii.edu/nebulous --path $file 2>&1`; + + +if ($nebitems[0] =~ /no instances/) { + print "no instances\n"; + +} +else { + @tail=`tail -n 50 $nebitems[0]`; + foreach $tail_item (@tail) { + print $tail_item; + } +} + + + Index: /branches/eam_branches/20091201/tools/processing_quick_check.pl =================================================================== --- /branches/eam_branches/20091201/tools/processing_quick_check.pl (revision 26860) +++ /branches/eam_branches/20091201/tools/processing_quick_check.pl (revision 26860) @@ -0,0 +1,227 @@ +#!/usr/bin/perl -w +use DBI; +use constant DB_SOCKET => '/var/run/mysqld/mysqld.sock'; # Socket for mysql +use Getopt::Long qw( GetOptions :config auto_help auto_version gnu_getopt ); + +GetOptions('label=s' => \$label,) or die "unable to parse arguments.\n"; +die "Unknown option: @ARGV\n" if @ARGV; +die "required options: --label \n" + unless defined $label; + + +my $dbname = 'gpc1'; +my $dbserver = 'ippdb01'; +my $dbuser = 'ippuser'; +my $dbpass = 'ippuser'; +my $db = DBI->connect( + "DBI:mysql:database=${dbname};host=${dbserver};mysql_socket=" . + DB_SOCKET(),${dbuser},${dbpass}, + { + RaiseError => 1, AutoCommit => 1} + ) or die "Unable to connect to database $DBI::errstr\n"; +my $qr = "SELECT label,state,count(state) as n FROM chipRun WHERE label like '$label' group by state;"; + +my $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; +print "chip stage \n"; + +foreach my $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\ncam stage\n"; + $qr = "SELECT label,state,count(state) as n FROM camRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\nfake stage\n"; + $qr = "SELECT label,state,count(state) as n FROM fakeRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + +#rint $qr; +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\nwarp stage\n"; + $qr = "SELECT label,state,count(state) as n FROM warpRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} + +print "\nstack stage\n"; + $qr = "SELECT label,state,count(state) as n FROM stackRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\ndiff stage\n"; + $qr = "SELECT label,state,count(state) as n FROM diffRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\nmagic stage\n"; + $qr = "SELECT label,state,count(state) as n FROM magicRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} +print "\nmagicDS stage\n"; + $qr = "SELECT label,state,count(state) as n FROM magicDSRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} + +print "\ndist stage\n"; + $qr = "SELECT label,state,count(state) as n FROM distRun WHERE label like '$label' group by state;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "${$item}[0] ${$item}[1] ${$item}[2] \n"; +} + +print "\n-------------------\n"; +print "faults and log files\n\n"; + +$qr = "select chip_id,class_id,state, fault, path_base from chipRun join chipProcessedImfile using(chip_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "chip ${$item}[2] ${$item}[3] ${$item}[4].${$item}[1].log\n"; +} + + +$qr = "select cam_id,state, fault, path_base from camRun join camProcessedExp using (cam_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "cam ${$item}[1] ${$item}[2] ${$item}[3].log\n"; +} + +$qr = "select fake_id,state, fault, path_base from fakeRun join fakeProcessedImfile using(fake_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "fake ${$item}[1] ${$item}[2] ${$item}[3].log\n"; +} + +$qr = "select warp_id,skycell_id,state, fault, path_base from warpRun join warpSkyfile using(warp_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "warp ${$item}[2] ${$item}[3] ${$item}[4].log\n"; +} + +$qr = "select warp_id,skycell_id,state, fault, workdir from warpRun join warpSkyCellMap using(warp_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "warp ${$item}[2] ${$item}[3] ${$item}[4]\n"; +} + + + + + + +$qr = "select stack_id,skycell_id,state, fault, path_base from stackRun join stackSumSkyfile using(stack_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "stck ${$item}[2] ${$item}[3] ${$item}[4].log \n"; +} + + +$qr = "select diff_id,skycell_id,state, fault, path_base from diffRun join diffSkyfile using(diff_id) where label ='$label' and (fault > 0) order by fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "diff ${$item}[2] ${$item}[3] ${$item}[4].log \n"; +} + + +$qr = "select magic_id, magicRun.state, magicNodeResult.fault, path_base, workdir from magicRun join magicNodeResult using (magic_id) where label ='$label' and (magicNodeResult.fault > 0) order by magicNodeResult.fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; +foreach $item (@{$query}) { +if (!defined( ${$item}[3])) { ${$item}[3]=${$item}[4];} + print "magic ${$item}[1] ${$item}[2] ${$item}[3]\n"; +} + +$qr = "select magic_id, state, magicDSFile.fault, outroot from magicDSRun join magicDSFile using (magic_ds_id) where label ='$label' and (magicDSFile.fault > 0) order by magicDSFile.fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + + +foreach $item (@{$query}) { + print "destreak ${$item}[1] ${$item}[2] ${$item}[3] \n"; +} + + + +$qr = "select distRun.state, distComponent.fault, distComponent.outdir, outroot from distRun join distComponent using (dist_id) where label ='$label' and (distComponent.fault > 0) order by distComponent.fault desc;"; + + $query = $db->selectall_arrayref( $qr ) || + die "Unable to execute SQL: $DBI::errstr\n"; + + +foreach $item (@{$query}) { + print "dist ${$item}[0] ${$item}[1] ${$item}[2]\n"; +} + +$db->disconnect();