Index: branches/tap_branches/ppStack/src/ppStackSetup.c
===================================================================
--- branches/tap_branches/ppStack/src/ppStackSetup.c	(revision 25900)
+++ branches/tap_branches/ppStack/src/ppStackSetup.c	(revision 27838)
@@ -22,4 +22,9 @@
     psAssert(recipe, "We've thrown an error on this before.");
 
+    // XXX : switch to this name? options->matchZPs = psMetadataLookupBool(NULL, recipe, "MATCH.ZERO.POINTS"); // Adjust zero points based on tranparency analysis?
+    options->matchZPs = psMetadataLookupBool(NULL, recipe, "ZP"); // Adjust zero points?
+
+    options->photometry = psMetadataLookupBool(NULL, recipe, "PHOTOMETRY"); // Perform photometry?
+
     options->convolve = psMetadataLookupBool(NULL, recipe, "CONVOLVE"); // Convolve images?
     if (!psMetadataLookupBool(NULL, config->arguments, "HAVE.PSF")) {
@@ -37,5 +42,5 @@
         options->statsFile = fopen(resolved, "w");
         if (!options->statsFile) {
-            psError(PS_ERR_IO, true, "Unable to open statistics file %s for writing.\n", resolved);
+            psError(PPSTACK_ERR_IO, true, "Unable to open statistics file %s for writing.\n", resolved);
             psFree(resolved);
             return false;
@@ -43,11 +48,13 @@
         psFree(resolved);
         options->stats = psMetadataAlloc();
-        psMetadataAddS32(options->stats, PS_LIST_TAIL, "QUALITY", 0, "No problems", 0);
     }
 
     // Generate temporary names for convolved images
-    const char *tempDir = psMetadataLookupStr(NULL, recipe, "TEMP.DIR"); // Directory for temporary images
+    const char *tempDir = psMetadataLookupStr(NULL, config->arguments, "-temp-dir"); // Directory for temps
     if (!tempDir) {
-        psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Unable to find TEMP.DIR in recipe");
+        tempDir = psMetadataLookupStr(NULL, config->site, "TEMP.DIR");
+    }
+    if (!tempDir) {
+        psError(PPSTACK_ERR_CONFIG, false, "Unable to find TEMP.DIR in site configuration");
         return false;
     }
@@ -57,5 +64,5 @@
     const char *tempName = basename(outputName);
     if (!tempName) {
-        psError(PS_ERR_BAD_PARAMETER_VALUE, false, "Unable to construct basename for temporary files.");
+        psError(PPSTACK_ERR_ARGUMENTS, false, "Unable to construct basename for temporary files.");
         psFree(outputName);
         return false;
@@ -66,5 +73,5 @@
     const char *tempVariance = psMetadataLookupStr(NULL, recipe, "TEMP.VARIANCE"); // Suffix for var maps
     if (!tempImage || !tempMask || !tempVariance) {
-        psError(PS_ERR_BAD_PARAMETER_VALUE, false,
+        psError(PPSTACK_ERR_CONFIG, false,
                 "Unable to find TEMP.IMAGE, TEMP.MASK and TEMP.VARIANCE in recipe");
         psFree(outputName);
@@ -72,7 +79,7 @@
     }
 
-    options->imageNames = psArrayAlloc(num);
-    options->maskNames = psArrayAlloc(num);
-    options->varianceNames = psArrayAlloc(num);
+    options->convImages = psArrayAlloc(num);
+    options->convMasks = psArrayAlloc(num);
+    options->convVariances = psArrayAlloc(num);
     for (int i = 0; i < num; i++) {
         psString imageName = NULL, maskName = NULL, varianceName = NULL; // Names for convolved images
@@ -81,12 +88,33 @@
         psStringAppend(&varianceName, "%s/%s.%d.%s", tempDir, tempName, i, tempVariance);
         psTrace("ppStack", 5, "Temporary files: %s %s %s\n", imageName, maskName, varianceName);
-        options->imageNames->data[i] = imageName;
-        options->maskNames->data[i] = maskName;
-        options->varianceNames->data[i] = varianceName;
+        options->convImages->data[i] = imageName;
+        options->convMasks->data[i] = maskName;
+        options->convVariances->data[i] = varianceName;
     }
     psFree(outputName);
 
+    // Original images
+    options->origImages = psArrayAlloc(num);
+    options->origMasks = psArrayAlloc(num);
+    options->origVariances = psArrayAlloc(num);
+    pmFPAview *view = pmFPAviewAlloc(0);
+    for (int i = 0; i < num; i++) {
+        {
+            pmFPAfile *file = pmFPAfileSelectSingle(config->files, "PPSTACK.INPUT", i);
+            options->origImages->data[i] = pmFPAfileName(file, view, config);
+        }
+        {
+            // We want the convolved mask, since that defines the area that has been tested for outliers
+            options->origMasks->data[i] = psMemIncrRefCounter(options->convMasks->data[i]);
+        }
+        {
+            pmFPAfile *file = pmFPAfileSelectSingle(config->files, "PPSTACK.INPUT.VARIANCE", i);
+            options->origVariances->data[i] = pmFPAfileName(file, view, config);
+        }
+    }
+    psFree(view);
+
     if (!pmConfigMaskSetBits(NULL, NULL, config)) {
-        psError(PS_ERR_UNKNOWN, false, "Unable to determine mask value.");
+        psError(PPSTACK_ERR_CONFIG, false, "Unable to determine mask value.");
         return false;
     }