Index: branches/haf_add201112/ippTools/share/mergetool_find_minidvodb_id.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_find_minidvodb_id.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_find_minidvodb_id.sql	(revision 32980)
@@ -0,0 +1,8 @@
+SELECT minidvodbRun.* FROM minidvodbRun
+JOIN minidvodbProcessed USING(minidvodb_id)
+WHERE minidvodbRun.state = 'merged' and minidvodbProcessed.fault = 0
+    AND minidvodb_id NOT IN (SELECT minidvodb_id
+       FROM mergedvodbRun
+       JOIN minidvodbRun USING(minidvodb_id)
+       WHERE %s
+      )
Index: branches/haf_add201112/ippTools/share/mergetool_find_pending_merge.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_find_pending_merge.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_find_pending_merge.sql	(revision 32980)
@@ -0,0 +1,11 @@
+SELECT
+    mergedvodbRun.*
+FROM mergedvodbRun
+LEFT JOIN mergedvodbProcessed
+    USING(merge_id)
+WHERE
+  (mergedvodbRun.state = 'new' AND mergedvodbProcessed.merge_id IS NULL)
+    AND mergedvodbRun.mergedvodb IS NOT NULL
+    AND mergedvodbRun.mergedvodb_path IS NOT NULL
+  
+
Index: branches/haf_add201112/ippTools/share/mergetool_find_pendingmergeprocess.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_find_pendingmergeprocess.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_find_pendingmergeprocess.sql	(revision 32980)
@@ -0,0 +1,5 @@
+SELECT mergedvodbRun.* 
+FROM mergedvodbRun 
+LEFT JOIN mergedvodbProcessed
+USING(merge_id)
+WHERE (mergedvodbRun.state = 'new' AND mergedvodbProcessed.merge_id IS NULL)
Index: branches/haf_add201112/ippTools/share/mergetool_find_processed.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_find_processed.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_find_processed.sql	(revision 32980)
@@ -0,0 +1,7 @@
+SELECT
+    mergedvodbProcessed.*,
+    mergedvodbRun.mergedvodb_path
+FROM mergedvodbProcessed
+JOIN mergedvodbRun
+    USING(merge_id)
+
Index: branches/haf_add201112/ippTools/share/mergetool_queue_merge_id.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_queue_merge_id.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_queue_merge_id.sql	(revision 32980)
@@ -0,0 +1,11 @@
+INSERT INTO mergedvodbRun
+    SELECT
+        0,              -- merge_id
+	minidvodb_id,   -- minidvodb_id
+        '%s',           -- mergedvodb
+        '%s',           -- mergedvodb_path
+	'%s',           -- state
+    FROM minidvodbRun join minidvodbProcessed using (minidvodb_id)
+    WHERE
+        minidvodbRun.state = 'merged' and minidvodbProcessed.fault = 0
+        AND minidvodbRun.minidvodb_id = %lld
Index: branches/haf_add201112/ippTools/share/mergetool_queue_minidvodb_id.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_queue_minidvodb_id.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_queue_minidvodb_id.sql	(revision 32980)
@@ -0,0 +1,15 @@
+INSERT INTO minidvodbCopy
+    SELECT
+        0,              -- minidvodbcopy_id
+        minidvodb_id,         -- minidvodb_id
+        '%s',           -- minidvodb_rsync_path
+        '%s',           -- destination_host
+	%d,           -- fault
+        '%s',           -- state
+        %s,           -- epoch
+        %f           -- dtime
+        
+    FROM minidvodbRun
+    WHERE
+        minidvodbRun.state = 'merged'
+        AND minidvodbRun.minidvodb_id = %lld
Index: branches/haf_add201112/ippTools/share/mergetool_revertmergedvodbprocessed.sql
===================================================================
--- branches/haf_add201112/ippTools/share/mergetool_revertmergedvodbprocessed.sql	(revision 32980)
+++ branches/haf_add201112/ippTools/share/mergetool_revertmergedvodbprocessed.sql	(revision 32980)
@@ -0,0 +1,6 @@
+DELETE FROM mergedvodbProcessed
+USING mergedvodbProcessed, mergedvodbRun
+WHERE
+    mergedvodbProcessed.merge_id = mergedvodbRun.merge_id
+    AND mergedvodbProcessed.fault != 0
+    AND mergedvodbRun.state = 'new'
Index: branches/haf_add201112/ippTools/src/mergetool.c
===================================================================
--- branches/haf_add201112/ippTools/src/mergetool.c	(revision 32980)
+++ branches/haf_add201112/ippTools/src/mergetool.c	(revision 32980)
@@ -0,0 +1,810 @@
+/*
+ * addtool.c
+ *
+ * Copyright (C) 2006  Joshua Hoblitt
+ *
+ * This program is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation; version 2 of the License.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
+ * more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * program; see the file COPYING. If not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#include <stdlib.h>
+#include <stdint.h>
+#include <inttypes.h>
+
+#include "pxtools.h"
+#include "pxmerge.h"
+#include "mergetool.h"
+
+static bool definebyqueryMode(pxConfig *config);
+static bool updaterunMode(pxConfig *config);
+static bool pendingmergeMode(pxConfig *config);
+static bool addmergedMode(pxConfig *config);
+static bool listmergedMode(pxConfig *config);
+static bool revertmergedMode(pxConfig *config);
+static bool updatemergedMode(pxConfig *config);
+
+
+
+# define MODECASE(caseName, func) \
+    case caseName: \
+    if (!func(config)) { \
+        goto FAIL; \
+    } \
+    break;
+
+int main(int argc, char **argv)
+{
+    psLibInit(NULL);
+
+    pxConfig *config = mergetoolConfig(NULL, argc, argv);
+    if (!config) {
+        psError(PXTOOLS_ERR_CONFIG, false, "failed to configure");
+        goto FAIL;
+    }
+
+    switch (config->mode) {
+        MODECASE(MERGETOOL_MODE_DEFINEBYQUERY,        definebyqueryMode);
+	MODECASE(MERGETOOL_MODE_UPDATERUN, updaterunMode);
+        MODECASE(MERGETOOL_MODE_PENDINGMERGE, pendingmergeMode);
+        MODECASE(MERGETOOL_MODE_ADDMERGED, addmergedMode);
+        MODECASE(MERGETOOL_MODE_LISTMERGED, listmergedMode);
+        MODECASE(MERGETOOL_MODE_REVERTMERGED, revertmergedMode);
+        MODECASE(MERGETOOL_MODE_UPDATEMERGED, updatemergedMode);
+
+
+
+        default:
+            psAbort("invalid option (this should not happen)");
+    }
+
+    psFree(config);
+    pmConfigDone();
+    psLibFinalize();
+
+    exit(EXIT_SUCCESS);
+
+FAIL:
+    psErrorStackPrint(stderr, "\n");
+    int exit_status = pxerrorGetExitStatus();
+
+    psFree(config);
+    pmConfigDone();
+    psLibFinalize();
+
+    exit(exit_status);
+}
+
+
+static bool definebyqueryMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, NULL);
+    psMetadata *where = psMetadataAlloc();
+    PXOPT_COPY_S64(config->args, where, "-minidvodb_id", "minidvodbRun.minidvodb_id", "==");
+    PXOPT_COPY_STR(config->args, where, "-minidvodb_group", "minidvodbRun.minidvodb_group", "==");
+    //   PXOPT_COPY_STR(config->args, where, "-mergedvodb", "mergedvodbRun.mergedvodb", "==");
+
+
+
+    if (!psListLength(where->list)) {
+        psFree(where);
+        psError(PXTOOLS_ERR_CONFIG, false, "search parameters are required");
+        return false;
+    }
+    PXOPT_LOOKUP_STR(state, config->args, "-set_state", false, false);
+    PXOPT_LOOKUP_STR(mergedvodb_path, config->args, "-set_mergedvodb_path", false, false);
+    PXOPT_LOOKUP_STR(mergedvodb, config->args, "-mergedvodb", true, false);
+
+    PXOPT_LOOKUP_BOOL(pretend,    config->args, "-pretend", false);
+    PXOPT_LOOKUP_BOOL(simple,     config->args, "-simple", false);
+
+    //find the items to queue (uniq minidvodb_id)
+ psString dvodb_string = NULL;
+    psString bare_query = NULL;
+
+bare_query = pxDataGet("mergetool_find_minidvodb_id.sql");
+ psStringAppend(&dvodb_string, "mergedvodbRun.mergedvodb = '%s'", mergedvodb);
+
+if (!bare_query) {
+        psError(PXTOOLS_ERR_SYS, false, "failed to retrieve SQL statement");
+        psFree(where);
+        return false;
+    }
+    // Take the bare query and add the dvodb selector
+    psString query = NULL;
+    psStringAppend(&query, bare_query, dvodb_string);
+    psFree(dvodb_string);
+    psFree(bare_query);
+
+       // use psDBGenerateWhereConditionSQL because the SQL ends in a WHERE
+    if (where && psListLength(where->list)) {
+        psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+        psStringAppend(&query, " AND %s", whereClause);
+        psFree(whereClause);
+    } else {
+        psError(PS_ERR_UNKNOWN, true, "search parameters are required");
+        return false;
+    }
+    psFree(where);
+
+
+    psStringAppend(&query, " GROUP BY minidvodb_id");
+
+
+    psTrace("mergetool.c", PS_LOG_INFO,"query: \n\n%s\n\n",query);
+
+if (!p_psDBRunQuery(config->dbh, query)) {
+      psError(PS_ERR_UNKNOWN, false, "database error, \n%s\n", query);
+        psFree(query);
+        return false;
+    }
+    psFree(query);
+
+      psArray *output = p_psDBFetchResult(config->dbh);
+    if (!output) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        return false;
+    }
+    if (!psArrayLength(output)) {
+        psTrace("addtool", PS_LOG_INFO, "no rows found");
+        psFree(output);
+        return true;
+    }
+
+    if (pretend) {
+        // negative simple so the default is true
+        if (!ippdbPrintMetadatas(stdout, output, "addRun", !simple)) {
+            psError(PS_ERR_UNKNOWN, false, "failed to print array");
+            psFree(output);
+            return false;
+        }
+        psFree(output);
+        return true;
+    }
+
+for (long i = 0; i < psArrayLength(output); i++) {
+        psMetadata *md = output->data[i];
+
+        minidvodbRunRow *row = minidvodbRunObjectFromMetadata(md);
+        
+        if (!row) {
+            psError(PS_ERR_UNKNOWN, false, "failed to convert metadata into minidvodbRun");
+            psFree(output);
+            return false;
+        }
+
+        if (!mergedvodb) {
+            psError(PS_ERR_UNKNOWN, false, "cannot queue merge run without a defined mergedvodb:  minidvodb_id %" PRId64,row->minidvodb_id);
+            psFree(output);
+            return false;
+        }
+        if (!mergedvodb_path) {
+            psError(PS_ERR_UNKNOWN, false, "cannot queue merge run without a defined mergedvodb_path: minidvodb_id %" PRId64,row->minidvodb_id);
+            psFree(output);
+            return false;
+        }
+
+        psFree(row);
+    
+}
+
+    // start a transaction so we don't end up with an exp without any associted
+    // imfiles
+    if (!psDBTransaction(config->dbh)) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        psFree(output);
+        return false;
+    }
+for (long i = 0; i < psArrayLength(output); i++) {
+        psMetadata *md = output->data[i];
+        psS64 minidvodb_id =0; 
+        
+                  minidvodbRunRow *row = minidvodbRunObjectFromMetadata(md);
+          minidvodb_id = row->minidvodb_id;
+        
+        if (!row) {
+            psError(PS_ERR_UNKNOWN, false, "failed to convert metadata into minidvodbRun");
+            psFree(output);
+            return false;
+        }
+
+        // queue the exp
+        if (!pxmergeQueueByMinidvodbID(config,
+				       minidvodb_id,
+				       mergedvodb,
+				       mergedvodb_path
+                              
+        )) {
+            if (!psDBRollback(config->dbh)) {
+                psError(PS_ERR_UNKNOWN, false, "database error sfg");
+            }
+            psError(PS_ERR_UNKNOWN, false,
+                    "failed to trying to queue mergedvodb %" PRId64, minidvodb_id);
+            psFree(row);
+            psFree(output);
+            return false;
+        }
+        psFree(row);
+ 
+      }
+
+psFree(output);
+
+    if (!psDBCommit(config->dbh)) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        return false;
+    }
+
+
+
+
+
+    return true;
+}
+
+static bool updaterunMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, false);
+    psMetadata *where = psMetadataAlloc();
+    PXOPT_COPY_S64(config->args, where, "-merge_id",    "mergedvodbRun.merge_id", "==");
+    PXOPT_COPY_STR(config->args, where, "-mergedvodb", "mergedvodbRun.mergedvodb", "==");
+    
+    if (!psListLength(where->list)) {
+	  psFree(where);
+	  psError(PXTOOLS_ERR_CONFIG, false, "search parameters are required");
+	  return false;
+	}
+	
+	PXOPT_LOOKUP_STR(state, config->args, "-set_state", false, false);
+	PXOPT_LOOKUP_STR(mergedvodb_path, config->args, "-set_mergedvodb_path", false, false);
+	psString query = NULL;
+
+	query = psStringCopy("UPDATE mergedvodbRun SET");
+	
+	int cnt = 0;
+	psString comma = ",";
+	if (state) {
+	  psStringAppend(&query, " state = '%s'", state);
+	  cnt++;
+	}
+
+	if (mergedvodb_path) {
+	  if (cnt) {
+	    psStringAppend(&query, "%s", comma);
+	  }
+	  psStringAppend(&query, " mergedvodb_path = '%s'", mergedvodb_path);
+	  cnt++;
+	}
+
+
+	psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+	psStringAppend(&query, " WHERE %s", whereClause);
+
+	if (!p_psDBRunQuery(config->dbh, query)) {
+	  psError(PS_ERR_UNKNOWN, false, "database error");
+	  psFree(query);
+	  return false;
+	}
+
+	psFree(query);
+	psFree(where);
+	
+  
+	return true;
+}
+
+static bool pendingmergeMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, NULL);
+
+    psMetadata *where = psMetadataAlloc();
+    PXOPT_COPY_S64(config->args, where, "-minidvodb_id",    "mergedvodbRun.minidvodb_id", "==");
+    PXOPT_COPY_S64(config->args, where, "-merge_id",    "mergedvodbRun.merge_id", "==");
+    PXOPT_COPY_STR(config->args, where, "-mergedvodb",    "mergedvodbRun.mergedvodb", "==");
+
+
+
+    PXOPT_LOOKUP_U64(limit, config->args, "-limit", false, false);
+    PXOPT_LOOKUP_BOOL(simple, config->args, "-simple", false);
+   
+    psString query = NULL;
+    query = pxDataGet("mergetool_find_pending_merge.sql");
+    if (!query) {
+      psError(PXTOOLS_ERR_SYS, false, "failed to retreive SQL statement");
+      return false;
+    }
+
+    // use psDBGenerateWhereSQL because the SQL yields an intermediate table
+    if (psListLength(where->list)) {
+        psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+        psStringAppend(&query, " AND %s", whereClause);
+        psFree(whereClause);
+    }
+    psFree(where);
+
+       // treat limit == 0 as "no limit"
+    if (limit) {
+        psString limitString = psDBGenerateLimitSQL(limit);
+        psStringAppend(&query, " %s", limitString);
+        psFree(limitString);
+    }
+    if (!p_psDBRunQuery(config->dbh, query)) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        psFree(query);
+        return false;
+    }
+    psFree(query);
+        psArray *output = p_psDBFetchResult(config->dbh);
+    if (!output) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        return false;
+    }
+    if (!psArrayLength(output)) {
+        psTrace("addtool", PS_LOG_INFO, "no rows found");
+        psFree(output);
+        return true;
+    }
+
+    // negate simple so the default is true
+    if (!ippdbPrintMetadatas(stdout, output, "mergedvodbPendingMerge", !simple)) {
+        psError(PS_ERR_UNKNOWN, false, "failed to print array");
+        psFree(output);
+        return false;
+    }
+
+    psFree(output);
+    
+    return true;
+}
+
+static bool addmergedMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, false);
+
+    psMetadata *where = psMetadataAlloc();
+
+ PXOPT_LOOKUP_U64(merge_id, config->args, "-merge_id", true, false);
+ PXOPT_LOOKUP_STR(mergedvodb, config->args, "-mergedvodb", true, false);
+
+   // optional
+
+//PXOPT_LOOKUP_U64(merge_order,     config->args, "-merge_order", false, false);
+ PXOPT_LOOKUP_F32(dtime_merge, config->args, "-dtime_merge", false, false);
+ PXOPT_LOOKUP_F32(dtime_verify, config->args, "-dtime_verify", false, false);
+ PXOPT_LOOKUP_F32(dtime_script, config->args, "-dtime_script", false, false);
+  
+ PXOPT_LOOKUP_TIME(epoch, config->args, "-epoch", false, false);
+ PXOPT_LOOKUP_S16(fault,         config->args, "-fault", false, false);
+
+ PXOPT_COPY_S64(config->args, where, "-merge_id",   "mergedvodbRun.merge_id",   "==");
+ PXOPT_COPY_STR(config->args, where, "-mergedvodb",   "mergedvodbRun.mergedvodb",   "==");
+
+
+
+  if (!psDBTransaction(config->dbh)) {
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    return false;
+  }
+ psString query = pxDataGet("mergetool_find_pendingmergeprocess.sql");
+  if (!query) {
+    psError(PXTOOLS_ERR_SYS, false, "failed to retreive SQL statement");
+    return false;
+  }
+  // use psDBGenerateWhereSQL because the SQL yields an intermediate table
+  if (psListLength(where->list)) {
+    psString whereClaus = psDBGenerateWhereConditionSQL(where, NULL);
+    psStringAppend(&query, " AND %s", whereClaus);
+    psFree(whereClaus);
+  }
+  psFree(where);
+  psTrace("mergetool.c", PS_LOG_INFO, "query is:\n%s", query);
+  
+  if (!p_psDBRunQuery(config->dbh, query)) {
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    psFree(query);
+    return false;
+  }
+  psFree(query);
+
+psArray *output = p_psDBFetchResult(config->dbh);
+  if (!output) {
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    return false;
+  }
+  if (!psArrayLength(output)) {
+    psTrace("mergetool", PS_LOG_INFO, "no rows found");
+    psFree(output);
+    return true;
+  }
+
+  mergedvodbRunRow *pendingRow = mergedvodbRunObjectFromMetadata(output->data[0]);
+  psFree(output);
+  mergedvodbProcessedRow *row = mergedvodbProcessedRowAlloc(
+               pendingRow->merge_id,
+               0,
+	       dtime_verify ? dtime_verify : 0,
+               dtime_merge ? dtime_merge : 0,
+               dtime_script ? dtime_script : 0,
+               epoch,
+	       fault
+               );
+
+  if (!mergedvodbProcessedInsertObject(config->dbh, row)) {
+    // rollback
+    if (!psDBRollback(config->dbh)) {
+      psError(PS_ERR_UNKNOWN, false, "database error");
+    }
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    psFree(row);
+    psFree(pendingRow);
+    return false;
+  }
+
+//this finds the # of merged things (for the merge order)
+  psString query3 = NULL;
+  psStringAppend(&query3, "select count(*) from mergedvodbRun join mergedvodbProcessed using (merge_id) where state = 'full' and mergedvodb = '%s';", mergedvodb);
+
+  if (!p_psDBRunQuery(config->dbh, query3)) {
+    // rollback
+    if (!psDBRollback(config->dbh)) {
+      psError(PS_ERR_UNKNOWN, false, "database error");
+    }
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    psFree(query3);
+    return false;
+  }
+  psArray *output2 = p_psDBFetchResult(config->dbh);
+  if (!output2) {
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    return false;
+  }
+  if (!psArrayLength(output2)) {
+    psTrace("mergetool", PS_LOG_INFO, "no rows found");
+    psFree(output);
+    return true;
+  }
+  bool status;
+  psS64 m_order = psMetadataLookupS64(&status, output2->data[0], "count(*)");
+  if (!status) {
+
+    psAbort("failed to lookup value for count column");
+    return false;
+  }
+  psString final = NULL;
+  psStringAppend(&final, "%" PRIu64, m_order);
+    //return false;
+  psFree(query3);
+  psFree(output2);
+
+
+
+  //update the merge_order
+
+  psString query4 = NULL;
+  psStringAppend(&query4, "update mergedvodbProcessed set merge_order = %"PRIu64,m_order);
+  psStringAppend(&query4," where merge_id = %" PRIu64,  merge_id);
+  //printf("%s", query4);
+  if (!p_psDBRunQuery(config->dbh, query4)) {
+    // rollback
+    if (!psDBRollback(config->dbh)) {
+      psError(PS_ERR_UNKNOWN, false, "database error");
+    }
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    psFree(query4);
+    return false;
+  }
+  //
+psFree(query4);
+
+// since there is only one exp per 'new' set mergedvodbRun.state = 'full'
+
+  psString query2 = NULL ;
+
+  if (!fault) {
+    psStringAppend(&query2, "UPDATE mergedvodbRun SET state = 'full' WHERE merge_id = %'" PRIu64, row->merge_id);
+  
+    if (!p_psDBRunQuery(config->dbh, query2)) {
+      // rollback
+      if (!psDBRollback(config->dbh)) {
+	psError(PS_ERR_UNKNOWN, false, "database error");
+      }
+      psError(PS_ERR_UNKNOWN, false, "database error");
+      psFree(query2);
+      return false;
+    }
+    
+  }
+
+
+
+
+
+
+  psFree(row);
+  psFree(pendingRow);
+
+
+
+
+
+  //commit the changes
+  if (!psDBCommit(config->dbh)) {
+    psError(PS_ERR_UNKNOWN, false, "database error");
+    return false;
+  }
+
+
+
+
+ //print the merge_order (why not!)
+  printf("%s", final);
+  psFree(final);
+
+
+
+
+
+
+
+
+
+
+
+    return true;
+}
+
+
+static bool listmergedMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, NULL);
+    psMetadata *where = psMetadataAlloc();
+
+    PXOPT_COPY_S64(config->args, where, "-minidvodb_id",    "mergedvodbRun.minidvodb_id",    "==");
+    PXOPT_COPY_S64(config->args, where, "-merge_id",    "mergedvodbRun.merge_id",    "==");
+    PXOPT_COPY_STR(config->args, where, "-mergedvodb",    "mergedvodbRun.mergedvodb",    "==");
+
+    PXOPT_LOOKUP_U64(limit, config->args, "-limit", false, false);
+    PXOPT_LOOKUP_BOOL(simple, config->args, "-simple", false);
+    PXOPT_LOOKUP_BOOL(faulted, config->args, "-faulted", false);
+
+    psString query = NULL;
+    query = pxDataGet("mergetool_find_processed.sql");
+
+if (!query) {
+        psError(PXTOOLS_ERR_SYS, false, "failed to retreive SQL statement");
+        return false;
+    }
+
+    if (psListLength(where->list)) {
+        psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+        psStringAppend(&query, " WHERE %s", whereClause);
+        psFree(whereClause);
+    }
+
+    
+
+    // we either add AND (condition) or WHERE (condition):
+    if (psListLength(where->list) && faulted) {
+        // list only faulted rows
+        psStringAppend(&query, " %s", " AND fault != 0");
+    }
+      if (psListLength(where->list) && !faulted) {
+        // don't list faulted rows
+        psStringAppend(&query, " %s", " AND fault = 0");
+    }
+	if (!psListLength(where->list) && faulted) {
+        // list only faulted rows
+        psStringAppend(&query, " %s", " WHERE fault != 0");
+    }
+	if (!psListLength(where->list) && !faulted) {
+        // don't list faulted rows
+        psStringAppend(&query, " %s", " WHERE fault = 0");
+    }
+
+psFree(where);
+
+    // order by merge_id
+    psStringAppend(&query, " ORDER BY merge_id");
+    
+
+    // treat limit == 0 as "no limit"
+    if (limit) {
+        psString limitString = psDBGenerateLimitSQL(limit);
+        psStringAppend(&query, " %s", limitString);
+        psFree(limitString);
+    }
+
+    if (!p_psDBRunQuery(config->dbh, query)) {
+      psError(PS_ERR_UNKNOWN, false, "database error");
+        psFree(query);
+        return false;
+    }
+    psFree(query);
+
+    psArray *output = p_psDBFetchResult(config->dbh);
+    if (!output) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        return false;
+    }
+    if (!psArrayLength(output)) {
+        psTrace("addtool", PS_LOG_INFO, "no rows found");
+        psFree(output);
+        return true;
+    }
+
+ // negate simple so the default is true
+    if (!ippdbPrintMetadatas(stdout, output, "addProcessedExp", !simple)) {
+        psError(PS_ERR_UNKNOWN, false, "failed to print array");
+        psFree(output);
+        return false;
+    }
+
+    psFree(output);
+
+
+
+    return true;
+}
+
+
+static bool revertmergedMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, NULL);
+    psMetadata *where = psMetadataAlloc();
+    PXOPT_COPY_S64(config->args, where, "-merge_id",    "mergedvodbRun.merge_id",         "==");
+    PXOPT_COPY_S16(config->args, where, "-fault",    "mergedvodbRun.fault",         "==");
+    PXOPT_COPY_STR(config->args, where, "-mergedvodb",    "mergedvodbRun.mergedvodb",         "==");
+    
+    if (!psListLength(where->list)) {
+        psFree(where);
+        psError(PXTOOLS_ERR_CONFIG, false, "search parameters are required");
+        return false;
+    }
+      
+      if (!psDBTransaction(config->dbh)) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        psFree(where);
+        return false;
+      }
+
+      {
+      psString query = NULL;
+      query = pxDataGet("mergetool_revertmergedvodbprocessed.sql");
+
+if (!query) {
+            // rollback
+        if (!psDBRollback(config->dbh)) {
+                psError(PS_ERR_UNKNOWN, false, "database error");
+            }
+            psError(PXTOOLS_ERR_SYS, false, "failed to retreive SQL statement");
+            psFree(where);
+            return false;
+        }
+
+        // use psDBGenerateWhereConditionalSQL with AND ... because the SQL ends in a WHERE
+        if (where && psListLength(where->list)) {
+            psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+            psStringAppend(&query, " AND %s", whereClause);
+            psFree(whereClause);
+        }
+
+        if (!p_psDBRunQuery(config->dbh, query)) {
+            // rollback
+            if (!psDBRollback(config->dbh)) {
+                psError(PS_ERR_UNKNOWN, false, "database error");
+            }
+            psError(PS_ERR_UNKNOWN, false, "database error");
+            psFree(query);
+            psFree(where);
+            return false;
+        }
+        psFree(query);
+    }
+    psFree(where);
+
+    if (!psDBCommit(config->dbh)) {
+        psError(PS_ERR_UNKNOWN, false, "database error");
+        return false;
+    }
+
+
+
+    return true;
+}
+
+static bool updatemergedMode(pxConfig *config)
+{
+    PS_ASSERT_PTR_NON_NULL(config, NULL);
+    psMetadata *where = psMetadataAlloc();
+    PXOPT_LOOKUP_U64(minidvodb_id,  config->args, "-merge_id", true, false);
+    PXOPT_COPY_S64(config->args, where, "-merge_id",     "mergedvodbProcessed.merge_id", "==");
+    PXOPT_LOOKUP_F32(dtime_merge,  config->args, "-set_dtime_merge", false, false);
+    PXOPT_LOOKUP_F32(dtime_verify,  config->args, "-set_dtime_verify", false, false);
+    PXOPT_LOOKUP_F32(dtime_script,  config->args, "-set_dtime_script", false, false);
+    PXOPT_LOOKUP_S16(fault,  config->args, "-set_fault", false, false);
+    
+    PXOPT_LOOKUP_STR(state,  config->args, "-set_state", false, false);
+
+ if (!psListLength(where->list)) {
+    psFree(where);
+    psError(PXTOOLS_ERR_CONFIG, false, "search parameters are required");
+    return false;
+  }
+ psString query = psStringCopy("UPDATE mergedvodbProcessed JOIN mergedvodbRun USING (merge_id) SET ");
+int cnt = 0;
+  psString comma = ",";
+  if (fault) {
+    psStringAppend(&query, " fault = %d", fault);
+  cnt++;
+  }
+
+
+
+  if (dtime_verify) {
+    if (cnt) {
+      psStringAppend(&query, "%s", comma);
+    }
+    psStringAppend(&query, " dtime_verify = %f", dtime_verify);
+    cnt++;
+  }
+
+  if (dtime_merge) {
+    if (cnt) {
+      psStringAppend(&query, "%s", comma);
+    }
+    psStringAppend(&query, " dtime_merge = %f", dtime_merge);
+    cnt++;
+ }
+
+if (dtime_script) {
+    if (cnt) {
+      psStringAppend(&query, "%s", comma);
+    }
+    psStringAppend(&query, " dtime_script = %f", dtime_script);
+    cnt++;
+ }
+if (state) {
+    if (cnt) {
+      psStringAppend(&query, "%s", comma);
+    }
+    psStringAppend(&query, " state = '%s'", state);
+    cnt++;
+ }
+
+
+
+
+  psString whereClause = psDBGenerateWhereConditionSQL(where, NULL);
+  psStringAppend(&query, " WHERE %s", whereClause);
+
+  if (!p_psDBRunQuery(config->dbh, query)) {
+    psError(PS_ERR_UNKNOWN, false, "database error \n%s\n",query );
+   psFree(query);
+   return false;
+  }
+
+  psFree(query);
+  psFree(where);
+
+    return true;
+}
+
+
+
+
+
+
+
Index: branches/haf_add201112/ippTools/src/mergetool.h
===================================================================
--- branches/haf_add201112/ippTools/src/mergetool.h	(revision 32980)
+++ branches/haf_add201112/ippTools/src/mergetool.h	(revision 32980)
@@ -0,0 +1,38 @@
+/*
+ * addtool.h
+ *
+ * Copyright (C) 2006  Joshua Hoblitt, Christopher Waters
+ *
+ * This program is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation; version 2 of the License.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
+ * more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * program; see the file COPYING. If not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+
+#ifndef MERGETOOL_H
+#define MERGETOOL_H 1
+
+#include "pxtools.h"
+
+typedef enum {
+  MERGETOOL_MODE_NONE      = 0x0,
+  MERGETOOL_MODE_DEFINEBYQUERY,
+  MERGETOOL_MODE_UPDATERUN, 
+  MERGETOOL_MODE_PENDINGMERGE, 
+  MERGETOOL_MODE_ADDMERGED, 
+  MERGETOOL_MODE_LISTMERGED,
+  MERGETOOL_MODE_REVERTMERGED,
+  MERGETOOL_MODE_UPDATEMERGED
+} mergetoolMode;
+
+pxConfig *mergetoolConfig(pxConfig *config, int argc, char **argv);
+
+#endif // MERGETOOL_H
Index: branches/haf_add201112/ippTools/src/mergetoolConfig.c
===================================================================
--- branches/haf_add201112/ippTools/src/mergetoolConfig.c	(revision 32980)
+++ branches/haf_add201112/ippTools/src/mergetoolConfig.c	(revision 32980)
@@ -0,0 +1,147 @@
+/*
+ * addtoolConfig.c
+ *
+ *
+ * This program is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation; version 2 of the License.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
+ * more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * program; see the file COPYING. If not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#include <math.h>
+#include <stdint.h>
+
+#include <psmodules.h>
+
+#include "pxtools.h"
+#include "pxmerge.h"
+#include "mergetool.h"
+
+pxConfig *mergetoolConfig(pxConfig *config, int argc, char **argv)
+{
+    if (!config) {
+        config = pxConfigAlloc();
+    }
+
+    pmConfigReadParamsSet(false);
+
+    // setup site config
+    config->modules = pmConfigRead(&argc, argv, NULL);
+    if (!config->modules) {
+        psError(psErrorCodeLast(), false, "Can't find site configuration");
+        psFree(config);
+        return NULL;
+    }
+
+    // -definebyquery
+    psMetadata *definebyqueryArgs = psMetadataAlloc();
+    psMetadataAddS64(definebyqueryArgs, PS_LIST_TAIL, "-minidvodb_id",             0, "search by minidvodb_id", 0);
+    // pxcamSetSearchArgs(definebyqueryArgs);
+    psMetadataAddStr(definebyqueryArgs, PS_LIST_TAIL, "-mergedvodb", PS_META_DUPLICATE_OK, "search by mergedvodbRun.mergedvodb and use as mergedvodb", NULL);
+    psMetadataAddStr(definebyqueryArgs, PS_LIST_TAIL, "-minidvodb_group", PS_META_DUPLICATE_OK, "search by minidvodbRun.minidvodb_group", NULL);
+    psMetadataAddStr(definebyqueryArgs, PS_LIST_TAIL, "-set_state",        0, "define state", NULL);
+    psMetadataAddStr(definebyqueryArgs, PS_LIST_TAIL, "-set_mergedvodb_path",        0, "define workdir", NULL);
+    //  psMetadataAddStr(definebyqueryArge, PS_LIST_TAIL, "-set_mergedvodb", 0, "define mergedvodb");
+
+        //    psMetadataAddStr(definebyqueryArgs, PS_LIST_TAIL, "-set_reduction",      0, "define reduction class", NULL);
+    psMetadataAddBool(definebyqueryArgs, PS_LIST_TAIL, "-pretend",           0, "do not actually modify the database", false);
+    psMetadataAddBool(definebyqueryArgs, PS_LIST_TAIL, "-simple",            0, "use the simple output format", false);
+   
+    psMetadata *updaterunArgs = psMetadataAlloc(); 
+
+    psMetadataAddStr(updaterunArgs, PS_LIST_TAIL, "-mergedvodb",        0, "search by mergedvodb", 0);
+    psMetadataAddU64(updaterunArgs, PS_LIST_TAIL, "-merge_id",        0, "search by merge_id", 0);
+    psMetadataAddStr(updaterunArgs, PS_LIST_TAIL, "-set_state",        0, "change the state", NULL);
+    psMetadataAddStr(updaterunArgs, PS_LIST_TAIL, "-set_mergedvodb_path",        0, "define workdir", NULL);
+   
+
+    psMetadata *pendingmergeArgs = psMetadataAlloc();
+    psMetadataAddU64(pendingmergeArgs, PS_LIST_TAIL, "-minidvodb_id",        0, "search by minidvodb_id", 0);
+    psMetadataAddStr(pendingmergeArgs, PS_LIST_TAIL, "-merge_id",        0, "search by merge_id", NULL);
+    psMetadataAddStr(pendingmergeArgs, PS_LIST_TAIL, "-mergedvodb",         0, "search by mergedvodb", NULL);
+ 
+    psMetadataAddU64(pendingmergeArgs, PS_LIST_TAIL, "-limit",        0, "limit to N items", 0);
+    psMetadataAddBool(pendingmergeArgs, PS_LIST_TAIL, "-simple",        0, "simple output", false);
+   
+
+    psMetadata *addmergedArgs = psMetadataAlloc();
+    psMetadataAddU64(addmergedArgs, PS_LIST_TAIL, "-merge_id", 0, "search by merge_id (required)", 0);
+ psMetadataAddStr(addmergedArgs, PS_LIST_TAIL, "-mergedvodb", 0, "search by mergedvodb (required)", 0);
+    psMetadataAddF32(addmergedArgs, PS_LIST_TAIL, "-dtime_verify",    0,    "define elapsed time for DVO verify (seconds)", NAN);
+    psMetadataAddF32(addmergedArgs, PS_LIST_TAIL, "-dtime_merge",    0,    "define elapsed time for DVO merge (seconds)", NAN);
+    psMetadataAddF32(addmergedArgs, PS_LIST_TAIL, "-dtime_script",    0,    "define elapsed time for script (seconds)", NAN);
+    psMetadataAddTime(addmergedArgs, PS_LIST_TAIL, "-epoch",         0,    "time merge is finished", NULL);
+    psMetadataAddS16(addmergedArgs, PS_LIST_TAIL, "-fault",          0,    "set fault code", 0);
+
+
+
+
+    psMetadata *listmergedArgs = psMetadataAlloc();
+    psMetadataAddU64(listmergedArgs, PS_LIST_TAIL, "-minidvodb_id",        0, "search by minidvodb_id", 0);
+    psMetadataAddStr(listmergedArgs, PS_LIST_TAIL, "-merge_id",        0, "search by merge_id", NULL);
+    psMetadataAddStr(listmergedArgs, PS_LIST_TAIL, "-mergedvodb",         0, "search by minidvodbRun.minidvodb_group", NULL);
+    psMetadataAddU64(listmergedArgs, PS_LIST_TAIL, "-limit",        0, "limit to N items", 0);
+    psMetadataAddBool(listmergedArgs, PS_LIST_TAIL, "-simple",        0, "simple output", false);
+    psMetadataAddBool(listmergedArgs, PS_LIST_TAIL, "-faulted",        0, "limit to faulted state", false);
+
+
+    psMetadata *revertmergedArgs = psMetadataAlloc();
+    psMetadataAddU64(revertmergedArgs, PS_LIST_TAIL, "-merge_id",        0, "search by merge_id", 0);
+    psMetadataAddS16(revertmergedArgs, PS_LIST_TAIL, "-fault",        0, "search by minidvodbCopyfault", 0);
+    psMetadataAddStr(revertmergedArgs, PS_LIST_TAIL, "-mergedvodb",        0, "search by mergedvodb", NULL);
+
+    psMetadata *updatemergedArgs = psMetadataAlloc();
+
+    psMetadataAddU64(updatemergedArgs, PS_LIST_TAIL, "-merge_id",        0, "search by merge_id", 0);
+    psMetadataAddS16(updatemergedArgs, PS_LIST_TAIL, "-set_fault",  0,            "set fault code", 0);
+    psMetadataAddF32(updatemergedArgs, PS_LIST_TAIL, "-set_dtime_verify",    0,    "define elapsed time for DVO verify (seconds)", 0);
+    psMetadataAddF32(updatemergedArgs, PS_LIST_TAIL, "-set_dtime_merge",    0,    "define elapsed time for DVO merge (seconds)", 0);
+    psMetadataAddF32(updatemergedArgs, PS_LIST_TAIL, "-set_dtime_script",    0,    "define elapsed time for script (seconds)", 0);
+    psMetadataAddStr(updatemergedArgs, PS_LIST_TAIL, "-set_state",        0, "change the state", NULL);
+
+    psMetadata *argSets = psMetadataAlloc();
+    psMetadata *modes = psMetadataAlloc();
+
+    PXOPT_ADD_MODE("-definebyquery",        "create runs from minindvodbRun",           MERGETOOL_MODE_DEFINEBYQUERY, definebyqueryArgs);
+    PXOPT_ADD_MODE("-updaterun",        "update existing mergedvodbRuns",           MERGETOOL_MODE_UPDATERUN, updaterunArgs);
+    PXOPT_ADD_MODE("-pendingmerge",        "list pending mergedvodbRuns",           MERGETOOL_MODE_PENDINGMERGE, pendingmergeArgs);
+    PXOPT_ADD_MODE("-addmerged",        "add processed mergedvodbRun",           MERGETOOL_MODE_ADDMERGED, addmergedArgs);
+    PXOPT_ADD_MODE("-listmerged","list merged dvodbs",           MERGETOOL_MODE_LISTMERGED, listmergedArgs);
+    PXOPT_ADD_MODE("-revertmerged","revert merged dvodbs",        MERGETOOL_MODE_REVERTMERGED,     revertmergedArgs);
+    PXOPT_ADD_MODE("-updatemerged","change merged dvodb properties",MERGETOOL_MODE_UPDATEMERGED,  updatemergedArgs); 
+ 
+
+
+    if (!pxGetOptions(stderr, argc, argv, config, modes, argSets)) {
+        psError(PS_ERR_UNKNOWN, false, "option parsing failed");
+        psFree(argSets);
+        psFree(modes);
+        psFree(config);
+        return NULL;
+    }
+
+    psFree(argSets);
+    psFree(modes);
+
+    // define Database handle, if used
+    config->dbh = psMemIncrRefCounter(pmConfigDB(config->modules));
+    if (!config->dbh) {
+        psError(PS_ERR_UNKNOWN, false, "Can't configure database");
+        psFree(config);
+        return NULL;
+    }
+
+    return config;
+}
Index: branches/haf_add201112/ippTools/src/pxmerge.c
===================================================================
--- branches/haf_add201112/ippTools/src/pxmerge.c	(revision 32980)
+++ branches/haf_add201112/ippTools/src/pxmerge.c	(revision 32980)
@@ -0,0 +1,78 @@
+/*
+ * pxadd.c
+ *
+ * Copyright (C) 2007  Joshua Hoblitt
+ *
+ * This program is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation; version 2 of the License.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
+ * more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * program; see the file COPYING. If not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+
+#ifdef HAVE_CONFIG_H
+#include <config.h>
+#endif
+
+#include <stdlib.h>
+#include <ippdb.h>
+#include <string.h>
+
+#include "pxtools.h"
+#include "pxmerge.h"
+
+bool pxmergeQueueByMinidvodbID(pxConfig *config,
+                       psS64 minidvodb_id,
+                       char *mergedvodb,
+                       char *mergedvodb_path
+  )
+{
+    PS_ASSERT_PTR_NON_NULL(config, false);
+
+    // load the SQL to enqueue our exp_ids from disk once
+    static psString query = NULL;
+    if (!query) {
+        query = pxDataGet("mergetool_queue_merge_id.sql");
+        psMemSetPersistent(query, true);
+        if (!query) {
+            psError(PXTOOLS_ERR_SYS, false, "failed to retreive SQL statement");
+            return false;
+        }
+    }
+
+    // queue the exp
+    // Note: cam_id is being cast here work around psS64 have a different type different
+    // on 32/64
+    //if (!p_psDBRunQueryF(config->dbh, query,
+    //			 minidvodb_rsync_path   ? minidvodb_rsync_path     : "NULL",
+    //			 destination_host  ? destination_host   : "NULL",
+    //                  	 0,  //fault
+			   //			 "new", // state
+    //			 "NULL",
+						   //                      0, //dtime
+                       
+									     //                    (long long) minidvodb_id
+    //    )) 
+    if (!p_psDBRunQueryF(config->dbh,"INSERT INTO mergedvodbRun SELECT         0,   minidvodb_id, '%s', '%s', 'new', NULL FROM minidvodbRun     WHERE    minidvodbRun.minidvodb_id = %lld and minidvodbRun.state = 'merged'", mergedvodb, mergedvodb_path, (long long) minidvodb_id))
+
+    {
+      psError(PS_ERR_UNKNOWN, false, "database error %s", query);
+        return false;
+    }
+
+    // just to be safe, we should have changed at least one row
+    if (psDBAffectedRows(config->dbh) < 1) {
+        psError(PS_ERR_UNKNOWN, false,
+                "no rows affected - should have changed at least one row \n%s", query);
+        return false;
+    }
+
+    return true;
+}
Index: branches/haf_add201112/ippTools/src/pxmerge.h
===================================================================
--- branches/haf_add201112/ippTools/src/pxmerge.h	(revision 32980)
+++ branches/haf_add201112/ippTools/src/pxmerge.h	(revision 32980)
@@ -0,0 +1,34 @@
+/*
+ * pxadd.h
+ *
+ * Copyright (C) 2009  Joshua Hoblitt, Chris Waters
+ *
+ * This program is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation; version 2 of the License.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
+ * more details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * program; see the file COPYING. If not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+
+#ifndef PXMERGE_H
+#define PXMERGE_H 1
+
+#include <pslib.h>
+
+#include "pxtools.h"
+
+
+bool pxmergeQueueByMinidvodbID(pxConfig *config,
+		       psS64 minidvodb_id,
+		       char *mergedvodbb,
+		       char *mergedvodb_path
+		       );
+
+#endif // PXMERGE_H
