Index: trunk/pstamp/scripts/pstamp_job_run.pl
===================================================================
--- trunk/pstamp/scripts/pstamp_job_run.pl	(revision 35396)
+++ trunk/pstamp/scripts/pstamp_job_run.pl	(revision 35398)
@@ -113,4 +113,5 @@
 
     if ($stage eq "raw") {
+        # zap options that don't apply to raw stage
         $options &= ~($PSTAMP_SELECT_MASK | $PSTAMP_SELECT_VARIANCE); 
     }
@@ -136,4 +137,22 @@
         $argString .= " -astrom $params->{astrom}";
         push @file_list, $params->{astrom};
+    }
+
+    if ($options & $PSTAMP_SELECT_SOURCES) {
+        # Extract sources from astrometry file if provided. This will be the smf for chip stage
+        # or the skycal cmf for stacks
+        if ($params->{astrom}) {
+            $argString .= " -write_cmf";
+            if ($stage eq 'stack') {
+                # Set psphot recipe to STACKPHOT so that the extended source paramters will
+                # be copied from the cmf file.
+                $argString .= " -recipe PSPHOT STACKPHOT"
+            }
+        } elsif ($params->{cmf}) {
+            $argString .= " -write_cmf";
+            push @file_list, $params->{cmf};
+        } else {
+            print "Could not find suitable sources file will not write cmf\n";
+        }
     }
 
@@ -254,7 +273,8 @@
                            $PSTAMP_SELECT_MASK     => "mk.fits",
                            $PSTAMP_SELECT_VARIANCE => "wt.fits",
+                           $PSTAMP_SELECT_SOURCES  => "cmf",
                            $PSTAMP_SELECT_JPEG     => "jpg");
 
-        my $output_mask = $options & ($PSTAMP_SELECT_IMAGE | $PSTAMP_SELECT_MASK | $PSTAMP_SELECT_VARIANCE | $PSTAMP_SELECT_JPEG);
+        my $output_mask = $options & ($PSTAMP_SELECT_IMAGE | $PSTAMP_SELECT_MASK | $PSTAMP_SELECT_VARIANCE | $PSTAMP_SELECT_JPEG | $PSTAMP_SELECT_SOURCES);
 
         foreach my $key (keys (%extensions)) {
@@ -400,8 +420,8 @@
         my $pattern_file = $params->{pattern} if ($options & $PSTAMP_SELECT_BACKMDL);
         my $cmf_file;
-        if ($stage ne 'chip') {
-            # we don't ship chip stage cmf files because they may not be censored
-            $cmf_file = $params->{cmf} if ($options & $PSTAMP_SELECT_CMF);
-        }
+#        if ($stage ne 'chip') {
+#            # we don't ship chip stage cmf files because they may not be censored
+#            $cmf_file = $params->{cmf} if ($options & $PSTAMP_SELECT_CMF);
+#        }
 
         my $outdir = dirname($output_base);
Index: trunk/pstamp/scripts/pstampparse.pl
===================================================================
--- trunk/pstamp/scripts/pstampparse.pl	(revision 35396)
+++ trunk/pstamp/scripts/pstampparse.pl	(revision 35398)
@@ -27,5 +27,5 @@
 my $outdir;
 my $product;
-my $label;
+my $label = "";
 my $save_temps;
 my $no_update;
@@ -57,4 +57,8 @@
     die "outdir is required"  if !$outdir;
     die "product is required"  if !$product;
+} else {
+    $req_id = 0;
+    $outdir = "nowhere";
+    $product = "dummy";
 }
 
@@ -83,11 +87,12 @@
 $pstamptool .= " -dbserver $dbserver" if $dbserver;
 
-# list_job is a deugging mode
-$no_update = 1 if $mode eq "list_job";
+# If $mode is not queue_job we are using a debugging mode
+# do not update the database
+$no_update = 1 if $mode ne "queue_job";
 
 my $mdcParser = PS::IPP::Metadata::Config->new; # Parser for metadata config files
 
 #
-# get the data from the extension header
+# Read the keywords from the extension header
 #
 my $fields_output;
@@ -96,8 +101,6 @@
     my ( $success, $error_code, $full_buf, $stdout_buf, $stderr_buf ) =
         run(command => $command, verbose => $verbose);
-    # fields doesn't return zero when it succeeds
-    #unless ($success) {
-    #    print STDERR @$stderr_buf;
-    #}
+
+    # note fields doesn't return zero when it succeeds.
     $fields_output = join "", @$stdout_buf;
 }
@@ -105,16 +108,17 @@
 
 # make sure the file contains what we are expecting
-# This program shouldn't have been run if the request file is bogus.
-my_die("$request_file_name is not a PS1_PS_REQEST", $PS_EXIT_PROG_ERROR) if $extname ne "PS1_PS_REQUEST";
-my_die("REQ_NAME not found in $request_file_name", $PS_EXIT_PROG_ERROR)  if (!$req_name);
-my_die("wrong EXTVER $extver found in $request_file_name", $PS_EXIT_PROG_ERROR) if ($extver ne "1" and $extver ne "2");
+# pstamp_parser_run.pl would not have run this program unless the request file was ok
+my_die("$request_file_name does not contain EXTNAME\n", $PS_EXIT_PROG_ERROR) if !$extname;
+my_die("$request_file_name is not a PS1_PS_REQUEST\n", $PS_EXIT_PROG_ERROR) if $extname ne "PS1_PS_REQUEST";
+my_die("REQ_NAME not found in $request_file_name\n", $PS_EXIT_PROG_ERROR)  if (!$req_name);
+my_die("wrong EXTVER $extver found in $request_file_name\n", $PS_EXIT_PROG_ERROR) if ($extver ne "1" and $extver ne "2");
 
 if ($extver >= 2) {
     # We have a version 2 file. Require that the new keywords be supplied. 
-    my_die("action not supplied in version $extver request file $request_file_name", $PSTAMP_INVALID_REQUEST) unless defined $action;
-
-    my_die("invalid action: $action supplied in version $extver request file $request_file_name", $PSTAMP_INVALID_REQUEST) unless (uc($action) eq 'PROCESS' or uc($action) eq 'PREVIEW');
-
-    my_die("email not supplied in version $extver request file $request_file_name", $PSTAMP_INVALID_REQUEST) unless $email;
+    my_die("action not supplied in version $extver request file $request_file_name\n", $PSTAMP_INVALID_REQUEST) unless defined $action;
+
+    my_die("invalid action: $action supplied in version $extver request file $request_file_name\n", $PSTAMP_INVALID_REQUEST) unless (uc($action) eq 'PROCESS' or uc($action) eq 'PREVIEW');
+
+    my_die("email not supplied in version $extver request file $request_file_name\n", $PSTAMP_INVALID_REQUEST) unless $email;
     # XXX check for "valid" $email
 } else {
@@ -437,5 +441,5 @@
     # Since user can get unmagicked data "by coordinate" requests can go back in time
     # to dredge unusable data from the "dark days"...
-    if ($req_type eq 'bycoord' and $row->{MJD_MIN} == 0) {
+    if ($req_type eq 'bycoord' and $row->{IMG_TYPE} ne 'stack' and $row->{MJD_MIN} == 0) {
         # ... so unless the user sets mjd_min clamp it to 2009-04-01
         # XXX: This value should live in the pstampProject table not be hardcoded here
@@ -454,5 +458,5 @@
     print "\nCalling new_locate_images for row: $rownum\n";
 
-    $imageList = new_locate_images($ipprc, $image_db, $camera, $row, $verbose);
+    $imageList = locate_images_for_row($ipprc, $image_db, $camera, $row, $verbose);
 
     my $dtime_locate = gettimeofday() - $start_locate;
@@ -736,6 +740,9 @@
 
     if ($mode eq "list_uri") {
+        $num_jobs = $imageList ? scalar @$imageList : 0;
+        print "List of $num_jobs Images selected for row: $firstRow->{ROWNUM}\n";
         foreach my $image (@$imageList) {
             print "$image->{image}\n";
+            ++$firstRow->{job_num};
         }
     } elsif ($job_type eq "get_image") {
@@ -1156,5 +1163,5 @@
     my $fault = shift;
 
-    carp $msg;
+    print STDERR $msg;
 
     # we don't fault the request here pstamp_parser_run.pl handles that if necessary