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--- /trunk/doc/release.2015/systematics.20140411/systematics.tex	(revision 37872)
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+\documentclass[iop,floatfix]{emulateapj}
+% \pdfoutput=1
+
+% see latex.readme.txt for notes on using the PS1 template
+%\documentclass[12pt,preprint]{aastex}
+%\documentclass[manuscript]{aastex}
+%\documentclass[preprint2]{aastex}
+%\documentclass[preprint2,longabstract]{aastex}
+\RequirePackage{color}
+\input{astro.sty}
+
+% online version may use color, but print version needs b/w
+\def\plotmode{col}
+%\def\plotmode{bw}
+
+%\def\plotext{pdf}
+\def\plotext{ps}
+
+\def\picdir{/home/eugene/chipresid.20140404}
+%\def\picdir{/data/pikake.2/eugene/chipresid.20140404}
+
+% Pick a terse version of the title here;
+\shorttitle{Systematics in PS1}
+\shortauthors{E.A. Magnier et al}
+\begin{document}
+\title{Systematic Effects in Pan-STARRS1 Photometry and Astrometry}
+
+% this is a crude trick to get the order of affiliations right.  These
+% names are used in the affiliations below.  The user needs to (1) set
+% the order and numbers to have the correct sequence in the author
+% list and (2) re-order the list at the bottom (and comment-out as needed)
+\def\IfA{1}
+\def\CfA{2}
+\def\MPIA{3}
+\def\Princeton{3}
+\def\USNO{4}
+\def\JHU{1}
+
+% This example has a first author from UH:
+\author{
+Eugene A. Magnier,\altaffilmark{\IfA}
+J.~L. Tonry, \altaffilmark{\IfA}
+D. Finkbeiner,\altaffilmark{\CfA}
+E. Schlafly,\altaffilmark{\MPIA}
+%PS Builder List
+% W.~S. Burgett,\altaffilmark{\IfA}
+% K.~C. Chambers,\altaffilmark{\IfA} 
+% L. Denneau,\altaffilmark{\IfA}
+% P. Draper,\altaffilmark{\DUR}
+% H.~A. Flewelling,\altaffilmark{\IfA}
+% T. Grav,\altaffilmark{\IfA}
+% J. N. Heasley,\altaffilmark{\IfA}
+% K. W. Hodapp,\altaffilmark{\IfA}
+% M. E. Huber,\altaffilmark{\IfA}
+% R. Jedicke,\altaffilmark{\IfA}
+% N. Kaiser,\altaffilmark{\IfA}
+% R.-P. Kudritzki,\altaffilmark{\IfA}
+% G. A. Luppino,\altaffilmark{\IfA}
+% R. H. Lupton,\altaffilmark{\Princeton}
+% E. A. Magnier,\altaffilmark{\IfA}
+% N. Metcalfe,\altaffilmark{\DUH}
+% D. G. Monet,\altaffilmark{\USNO}
+% J.~S. Morgan,\altaffilmark{\IfA}
+% P. M. Onaka,\altaffilmark{\IfA}
+% P.~A. Price,\altaffilmark{\Princeton}
+% C.~W. Stubbs,\altaffilmark{\CfA}
+% W.~E. Sweeney,\altaffilmark{\IfA}
+% J.~L. Tonry, \altaffilmark{\IfA}
+% R. J. Wainscoat,\altaffilmark{\IfA} and 
+% C. Z. Waters,\altaffilmark{\IfA}
+} % this bracket terminates author list
+
+% The ordering here should be sequential, matching the sequence in the list of authors:
+\altaffiltext{\IfA}{Institute for Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu HI 96822}
+\altaffiltext{\CfA}{Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138}
+% \altaffiltext{\Princeton}{Department of Astrophysical Sciences, Princeton University, Princeton, NJ 08544, USA}
+% \altaffiltext{\USNO}{US Naval Observatory, Flagstaff Station, Flagstaff, AZ 86001, USA}
+% \altaffiltext{\JHU}{Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218, USA}
+\altaffiltext{\MPIA}{Max Planck Institute for Astronomy, K\"onigstuhl 17, D-69117 Heidelberg, Germany}
+\begin{abstract}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vestibulum
+bibendum nisi id tristique posuere. Duis eu mollis nulla. Maecenas est
+turpis, mattis tempor urna vitae, placerat rhoncus sem. Lorem ipsum
+dolor sit amet, consectetur adipiscing elit. Sed quis velit
+nisl. Aliquam erat volutpat. Cras lacinia, nisl tristique auctor
+molestie, dolor nulla rhoncus purus, ac accumsan nunc nunc ac
+nibh. Maecenas vitae mollis mauris. Ut sollicitudin pulvinar purus,
+eget luctus lorem tincidunt vitae. Vestibulum eu mattis neque. Nulla
+in tortor id urna dapibus gravida a vel leo.
+
+\end{abstract}
+
+% insert additional keywords as appropriate:
+\keywords{Surveys:\PSONE }
+
+\section{INTRODUCTION}\label{sec:intro}
+
+% discuss the science drivers
+% summary concept of paper:
+%% explore the systematic limitations of PS1
+%% connections between astrometric and photometric systematics
+
+\section{Pan-STARRS1}
+
+The Pan-STARRS\,1 telescope (PS1) has recently completed observations
+for its first survey mission (REF).  PS1 is 1.8m telescope located on
+the summit of Haleakala on the Hawaiian island of Maui (REF).  This
+wide-field telescope images a 3.3 degree field of view on a 1.4
+gigapixel camera, with low distortion and generally good image quality
+(median \approx \note{1.1 arcseconds} in all filters except for g,
+with 1.3 arcseconds).  Available filters are \gps,\rps,\ips with
+bandpasses similar to the equivalent SDSS filters; \zps is somewhat
+bluer than the SDSS $z$, while \yps is somewhat redder (see, REF, for
+a complete specification).
+
+The first PS1 science survey mission began 2010 May and completed 31
+March 2014.  The bulk of the observing time (56\%) goes to the
+``3$\pi$ Survey'', in which the \approx 30,000 square degrees
+observable from Hawaii (north of Dec = -30) were repeatedly observed
+over the nearly 4 year survey period.  The typical coverage at the end
+of the survey is \approx 10 observations per filter per point on the
+sky in the 3$\pi$ region.  The repeated observations allows for good
+characterization of systematic sources of uncertainty.
+
+The PS1 data will be released to the public in the Spring of 2015 via
+the Mikulsky Archive to Space Telescopes (MAST) at the Space Telescope
+Science Institute (STScI).
+
+\subsection{GigaPixel Camera\,1}
+
+The PS1 GigaPixel Camera\,1 (GPC1) was the largest astronomical camera
+until HypersuprimeCam was completed.  GPC1 is a mosaic camera
+consisting of 60 detectors (``chips'') arranged in an 8x8 grid with
+the 4 corners missing (FIGURE?).  The detectors in this camera are
+othogonal transfer array devices (REF), in which the single silicon
+chip is sub-divided into a checkerboard of 64 sub-arrays (``cells'').
+Each cell may be independently addressed and read, and the charge
+accumulated in the pixels may be moved in either the $x$ or $y$
+directions (thus the term ``orthogonal transfer'').  The full GPC1
+thus consists of a total of 3840 cells, each \note{608 x 610} pixels.  
+
+\subsection{Data Processing}
+
+Images obtained from PS1 are written to a set of computers located in
+the observatory dome (``pixel servers''), and notification is then
+sent via a web service to the Image Processing Pipeline (IPP)
+computers in Kihei.  The IPP cluster retrieves images from the summit
+pixel servers as they are available, though no summit hand-shaking
+takes place.  The summit computers have a buffer for data from several
+days' of observing so that data is not lost if the link to Kihei is
+down or the IPP computer cluster is offline.
+
+Raw images are saved on the IPP cluster and processed as needed.  In
+general, every science exposure is processed as soon as possible in a
+stream called the ``nightly science processing''.  As the survey has
+proceeded and improvements have been made in the analysis software,
+images have been reprocessed.  To date (2015 Jan), there have been 2
+complete reprocesssing runs (identified PV1 and PV2), and a third
+(PV3) is in progress.  As the software has been improved, the nightly
+science processing software has been updated to reflect those
+improvements.  The nightly science processing thus is heterogenous in
+the analysis and algorithms used.  The software for the PVx
+reprocessing is more homogenous.
+
+Raw images are stored as multi-extension FITS images, with each cell
+in a given chip stored as a separate image extension. The raw data are
+generally stored with lossless compression applied to the pixel
+arrays \note{CFITSIO REF}.  The data for the 60 chips in a given
+exposure are stored as separate FITS files.
+
+The data processing system performs a number of steps distributed
+across a cluster of linux-based computers.  The first stage (``chip
+processing'') is performed on individual chip image files
+independently in parallel.  At this stage, the images are detrended,
+including overscan, bias, dark, flat-field, and (for $y$-band)
+fringing corrections.  Areas of bad data (e.g., regions of poor charge
+transfer efficiency or non-linear dark glows) are masked.  Within the
+IPP processing code, masked pixels are identified as non-zero values
+in a separate 16-bit mask image, which is then carried as part of the
+processed image data products.  The chip analysis also generates a
+variance image which is used along with the signal image to specify
+the noise properities as a function of pixel.  Details of the
+chip-stage processing can be found in \note{Waters et al REF}.
+
+The chip-stage analysis also includes source detection and basic
+characterization.  After a sky background model is subtracted from the
+image, individual sources are detected via cross-correlation with a
+PSF model.  Sources detected in the image are used to define the PSF
+model.  Simple aperture based measurements (total flux, 2nd and
+higher-order moments, etc) are measured for all detections.  An
+estimate of the extendedness (non-PSF-nature) of the sources is used
+to distinguish ``stellar'' detections from ``non-stellar'' detections.
+Non-stellar detections above a minimum signal-to-noise \note{of 20}
+are fitted with a galaxy surface brightness model, while remaining
+sources are fitted with a PSF model, or a cluster of PSF models.  The
+end result of the chip-stage analysis is a collection of parameters
+for each detection, including the positions ($X$, $Y$), PSF model
+flux, aperture fluxes, 2nd moments.  Details of the source analysis
+and characterization can be found in \note{Magnier et al REF}.
+
+\section{Photometry Analysis}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vestibulum
+bibendum nisi id tristique posuere. Duis eu mollis nulla. Maecenas est
+turpis, mattis tempor urna vitae, placerat rhoncus sem. Lorem ipsum
+dolor sit amet, consectetur adipiscing elit. Sed quis velit
+nisl. Aliquam erat volutpat. Cras lacinia, nisl tristique auctor
+molestie, dolor nulla rhoncus purus, ac accumsan nunc nunc ac
+nibh. Maecenas vitae mollis mauris. Ut sollicitudin pulvinar purus,
+eget luctus lorem tincidunt vitae. Vestibulum eu mattis neque. Nulla
+in tortor id urna dapibus gravida a vel leo.
+
+% refer back to refcat, ubercal, tonry
+% discuss the PSF modeling 
+% what are the limitations of the current photometric precision
+
+\section{Astrometry Analysis}
+
+Astrometric calibration defines a transformation from the raw
+instrumental positions (X,Y on a chip) to RA,DEC coordinates on the
+sky.  Astrometry calibration is performed at two separate stages in
+the IPP analysis.  First, every exposure is calibrated independently
+during the processing by comparison to a reference catalog.  This
+astrometric analysis is performed as part of the second processing
+stage, the ``camera'' analysis stage.  The output from the chip stage
+for all chips in an exposure are processed as a group in this
+analysis.  The initial guess for the astrometry comes from the
+telescope coordinates provided in the image headers.  
+
+The RA, DEC, and position angle of the telescope boresite are provided
+as part of the image metadata.  The telescope and camera systems also
+provide WCS header keywords for each chip separately.  However, in the
+early stages of the telescope commissioning, these values were not
+reliable.  Thus, within the IPP, and model for the camera layout is
+used so that the single triplet (RA,DEC,PA) can be used to predict the
+astrometric calibration of each chip.  This guess is generally good to
+10s of pixels, and need only be accurate to \approx 1/2 of a chip for
+the software to discover the true coordinates.
+
+The guess astrometry is used to select a set of likely reference stars
+from the reference database.  These stars are the cross-correlated
+with the measured source positions to find the likely match between
+stars in the reference catalog and detected sources in the image.
+
+Once a reliable match has been determined, astrometric transformations
+are determined to match the raw (X,Y) coordinates of the detections to
+sky coordinates of the corresponding reference stars.
+
+Within the IPP, two main classes of transformations may be used.  For
+single chips from non-mosaic cameras (or for the warp \& stack
+skycells), the astrometry calibration consists of a projection from the
+celestial sphere to a linearized coordinate system followed by a
+transformation from the projection coordiante frame to the pixel
+coordinate frame.  The projection may be one of several possible
+options (see Calabria et al REF), though in general the IPP uses the
+SIN (or TAN) projection (define?).  The transformation from the
+projection coordiates to the pixel coordinate may use an afine
+transformation or higher order polynomials (up to 3rd order).
+
+For chips from a mosaic camera, the astrometric transformation is
+defined as a multi-level operation.  As in single-chip astrometry, a
+projection (SIN or TAN) is used to convert the spherical celestial
+coordiates to a local linear system (the 'tanget plane' coorinate
+system).  There are then two level of cartesian transformations: a
+first set of polynomials (up to 3rd order) are used to transform the
+tangent plane coordinates to the ``focal plane'' coordinates.  This,
+relatively low-order, correction accounts for rotation of the camera
+and basic optical distortion coming from the optics and the
+atmosphere.  A second transformation is used to convert the focal
+plane coordinate to the pixel coordinates for each chip.  For the
+on-the-fly calibration, these
+transformations may consist of a set of polynomials up
+to 3rd order in X and/or Y (i.e, $x^i y^j$ where $i + j <= 3$)
+
+\note{add details on the transformation from focal-plane to tangent
+  plane: fit is done on the gradient}.
+
+The on-the-fly astrometric calibration determines the astrometric
+transformation to an accuracy of at least 0.3 arcsec (chips with worse
+astrometry are rejected).  Data from these images may now be ingested
+into our internal database software for astronomical objects, the
+Desktop Virtual Observatory \citep[DVO,][]{PS1.IPP}.  This database
+software associates detections from images together based on their
+positions in the sky to define astrnomical ``objects''.  The database
+includes metadata to describe the links between objects and their
+multiple detections as well as metadata defining the images and their
+astrometric transformations.  
+
+After images have been ingested into the DVO software, calibration
+improvements may be made within the database.  A program called
+``relastro'' is used to improve the astrometry iterative.  In one
+mode, relastro loops between improving the mean positions of objects
+and using the improved mean positions to improve the astrometric
+calibrations of the images.  In normal usage, relastro is only allowed
+to update the chip-to-focal plane transformations; it is not normally
+used to improve the focal-plane to tangent plane transformations.
+Also, within relastro, the transformation from chip-to-focal plane may
+be represented using either the polynomials as above or with a linear
+transformation plus bilinear interpolation of a grid of correction
+cells.  In the latter case, the grid may be sampled as finely as 6x6
+positions per chip.  
+
+% precision demonstration
+% koppenhoefer effect
+% MISSING: DCR!
+
+\section{Systematic Residuals}
+
+\subsection{Camera-Scale Trends}
+
+\subsection{Tree-Rings : An Example Chip}
+
+\begin{table}
+\caption{Systematic Trends : Stdev by filter\label{table:sigmas.by.filter}}
+% \tiny
+\begin{center}
+\begin{tabular}{|l|rrrrr|}
+\hline
+{\bf Filter} & {\bf psf mags} & {\bf ap mags} & {\bf astrom} & {\bf smear} & {\bf flat} \\
+             & mmags         & mmags          & mas          & pixels$^2$  & mmags \\
+\hline
+\gps & 11.8 & 13 & 8.0  & 0.169 &  3.0 \\ 
+\rps & 10.9 & 12 & 6.7  & 0.133 &  2.2 \\
+\ips &  8.5 & 10 & 6.0  & 0.069 &  1.7 \\
+\zps &  8.7 & 12 & 5.5  & 0.052 &  3.2 \\
+\yps & 16.5 & 26 & 6.8  & 0.059 & 15.3 \\
+\hline
+\end{tabular}
+\end{center}
+\end{table}
+
+We observe a number of low-level effects in different types of
+measurements which have a similar spatial structure on individual
+chips.  These structures have a circular pattern centered one corner
+of the affected chips.  \note{do all chips show all effects?  is the
+  amplitude very different from chip to chip?}  We use measurements
+from chip XY40 to illustrate the spatial patterns and relationships
+between the different effects.  For all effects, we are measuring the
+mean value of the effect in 10x10 pixel boxes.  The resulting images
+are all constructed so that a given superpixel represents the same
+range of true GPC1 XY40 pixels.  Measurements were extracted from the
+``nightly science'' DVO database for observations covering the region
+($\alpha$,$\delta$) = (90\degree\ -- 150\degree, -25\degree\ --
+10\degree).  This region avoids the Galactic Plane where astrometric
+outliers have been more common.  We limit the analysis to good
+measurements (PSF\_QF $>$ 0.85) of likely stars ($|m_{psf} - m_{aper}|
+< 0.2$).  Only measurements with instrumental magnitude $< -8.0$
+($-2.5\log \mbox{cts sec}^{-1} < -8.0$) are include to ensure
+reasonable signal-to-noise per measurement.  We require at least 2
+measurements in a given filter and 5 measurements total for any star
+included in the analysis.
+
+The following four different measurements show tree-ring structures
+(a) photometric residuals, (b) astrometric residuals, (c) a portion of
+the flat-field structure, and (d) variations in the second-moment of
+stars.  In the following section, we show the spatial patterns for
+these features and measure their intensity as a function of the
+different filters.  By comparing the spatial structures, we show that
+these effects are directly related.  We defer for now discussion of
+any causes of the observed effects.
+
+\subsubsection{Photometric Residuals}
+
+% PSF Magnitudes
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/dmag.g.\plotext}}
+\parbox{\figwidth}{
+\caption{PSF Magnitude residuals by Filter
+ } \label{fig:psfmags.by.filter}}
+
+\includegraphics[width=\figwidth]{\picdir/dmag.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dmag.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/dmag.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dmag.y.\plotext}
+\end{center}
+\end{figure*}
+
+% Aperture Magnitudes
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/dapmag.g.\plotext}}
+\parbox{\figwidth}{
+\caption{Aperture Magnitude residuals by Filter
+ } \label{fig:apmags.by.filter}}
+
+\includegraphics[width=\figwidth]{\picdir/dapmag.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dapmag.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/dapmag.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dapmag.y.\plotext}
+\end{center}
+\end{figure*}
+
+The tree-ring structure is clearly seen in the PSF magnitude
+residuals.  In this case, we select PSF magnitude measurements for
+detections which fall in the given superpixel.  We subtract each
+measurement from the average magnitude for the object in the selected
+filter ($\delta m_{psf} = \overline{m}_{psf} - m_{psf}$) to determine the
+residual magnitude, excluding as bad any measurement with $|\delta
+m_{psf}| > 0.5$.  For a given superpixel, we measure the median of the
+$\delta m_{psf}$ distribution.  Figure~\ref{fig:psfmags.by.filter}
+shows the 2D patterns of $\delta m_{psf}$ for each filter (\grizy).
+The dynamic range of the color scale is from -20 to +20
+millimagnitudes for all 5 plots.  
+
+The tree-ring pattern is clearly visible for the four blue filters,
+but finging dominates the pattern for \yps.  Small offsets of
+individual cells are also apparent for \zps.  While the patterns are
+clear across the image, the signal-to-noise of the structures per
+pixel is not very strong in these images.  The per-pixel standard
+deviations of these plots is listed in
+Table~\ref{table:sigmas.by.filter}.  The per-pixel standard deviation
+is comparable to the amplitude of the correlated structures, so we
+need to integrate along the radial structures to make stronger
+statements about these patterns.
+
+We have also performed the same measurement for aperture magnitudes,
+using the same selections.  The 2D patterns for the aperture
+magnitudes is shown in Figure~\ref{fig:apmags.by.filter}.  The finging
+pattern again dominates the plot for \yps, but the tree-rings are not
+seen in any of the filters.  A diagonal pattern is visible in \gps
+which is not observed in the PSF magnitudes.  While the per-pixel
+scatter is somewhat (10\% to 20\%) higher for these aperture
+magnitudes than for the PSF magnitudes
+(Table~\ref{table:sigmas.by.filter}), a structure with the amplitude
+of the PSF magnitude tree-rings would certainly have been obvious.
+
+\subsubsection{Astrometric Residuals}
+
+% astrometry radial term
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/drad.g.\plotext}}
+\parbox{\figwidth}{
+\caption{astrometric radial-direction residuals by Filter
+ } \label{fig:astrom.by.filter}}
+
+\includegraphics[width=\figwidth]{\picdir/drad.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/drad.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/drad.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/drad.y.\plotext}
+\end{center}
+\end{figure*}
+
+The tree-ring structure is also clearly seen in the astrometric
+residuals.  We use the same selection of measurements for astrometry
+as for photometry.  In this case, we extract the residual in both the
+RA and DEC directions ($\delta RA = \overline{RA} - RA_i$, $\delta DEC
+= \overline{DEC} - DEC_i$) and rotate these values to the chip
+coordinate system ($\delta X,\delta Y$).  We again exclude as bad any
+measurement with $|\delta X|$ or $|\delta Y| > 0.5$ arcsec before
+measuring the median values for each superpixel.  We have determined
+the approximate center of the circular tree-ring pattern as (-5,4960)
+for this particular chip.  Using this coordinate as the center, we
+have converted the $\delta X,\delta Y$ offsets into $\delta R,\delta
+\theta$ measurements ($\delta R$ : radial component away from the
+center, $\delta \theta$ : tangential component).
+
+Figure~\ref{fig:astrom.by.filter} shows the 2D patterns of $\delta R$
+for each filter (\grizy).  The dynamic range of the color scale is
+from -20 to +20 milliarcseconds for all 5 plots.  The tree-ring
+pattern is visible for all five filters; the finging pattern is not
+apparent in the \yps\ astrometry.  \note{low-frequency structures? did
+  that take off fringing?}  The per-pixel standard deviations of these
+plots is listed in Table~\ref{table:sigmas.by.filter}.  The
+signal-to-noise of these structures is again somewhat weak, but the
+pattern is clearly visible in these figures.
+
+\subsubsection{Flat-field Structures}
+
+% flat-field residual
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/dflat.g.\plotext}}
+\parbox{\figwidth}{
+\caption{Flat-field high-frequency structues by Filter
+ } \label{fig:flats.by.filter}}
+
+\includegraphics[width=\figwidth]{\picdir/dflat.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dflat.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/dflat.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/dflat.y.\plotext}
+\end{center}
+\end{figure*}
+
+The tree-ring structure is also clearly seen in the flat-field
+pattern.  For this measurement, we have used a set of monochromatic
+flat-field images obtained with a tunable laser.  The laser is used to
+illuminate our flat-field screen which is then observed by the PS1
+telescope.  These flat-field images were obtained 2011 Feb 09 as part
+of a campaign to study the PS1 system response (Tonry et al REF).
+Flats were obtain in a set of 4nm steps, with XXnm band-pass.  To
+enhance the signal-to-noise, we have combined a set of 6 flats at the
+center of the corresponding filter.  \note{high-pass filtering}.  
+
+Figure~\ref{fig:flats.by.filter} shows the remaining high-frequency
+structures in the flat-field images.  These flat-field images are
+displayed as fractional deviations relative to the median flat-field
+image and can thus be compared to the magnitude residuals.  When
+flattening an image, these flat-fields would be divided into the flux
+of the raw image.  The residuals are thus defined in the sense that a
+positive feature in these flats which does {\em not} represent a real
+quantum efficiency deviation would induce a {\em reduction} in the
+measured flux in those pixels, and thus a {\em negative} deviation in
+$\delta m_{psf}$ as defined above.  The dynamic range of the color
+scale in these plots is -0.01 to +0.01.  The tree-ring pattern is
+strong in the (\gps,\rps,\ips) images, but nearly swamped by fringing
+in \zps, and completely lost to finging in \yps.  A diagonal banding
+similar to the aperture residuals is seen in \gps.
+
+\subsubsection{Second Moments}
+
+% Smear Images
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/smear.g.\plotext}}
+\parbox{\figwidth}{
+\caption{Smear by filter
+ } \label{fig:smear.by.filter}}
+% note that the caption wants to be vertically centered.  I can push it up 
+% by padding the end with a big \vspace{1in}
+
+\includegraphics[width=\figwidth]{\picdir/smear.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/smear.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/smear.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/smear.y.\plotext}
+\end{center}
+\end{figure*}
+
+% Shear Images
+\def\figwidth{2.75in}
+\begin{figure*}[htbp]
+\begin{center}
+\parbox{\figwidth}{\includegraphics[width=\figwidth]{\picdir/shear.g.\plotext}}
+\parbox{\figwidth}{
+\caption{Shear by Filter
+ } \label{fig:shear.by.filter}}
+
+\includegraphics[width=\figwidth]{\picdir/shear.r.\plotext}
+\includegraphics[width=\figwidth]{\picdir/shear.i.\plotext}
+
+\includegraphics[width=\figwidth]{\picdir/shear.z.\plotext}
+\includegraphics[width=\figwidth]{\picdir/shear.y.\plotext}
+\end{center}
+\end{figure*}
+
+The tree-ring structure is also seen in the changes of the image size.
+To measure this effect, we extract the second moments for all
+detections, subject to the same selections as for the photometry and
+astrometry residuals (good stars, multiple detections).  The second
+moments are measured with a Gaussian weighting function, with the
+$\sigma_{w}$ scaled by the PSF size so that the $\sigma$ measured for
+PSF stars is \approx 60\% of $\sigma_{w}$.  (Note that, since the
+measured $\sigma$ of stellar objects is biased down by the weighting
+function, this is not quite the same as having $\sigma_{w} = 1.6$
+times the true PSF $\sigma$).  For each detection, we measure
+$M_{xx,xy,yy} = \sum F_i w_i (x^2, x y, y^2) / \sum F_i w_i$.  For
+each exposure, we find the mean second moments for PSF objects and
+subtract that mean value from the instantaneous measurements of
+$M_{xx,xy,yy}$.  We then determine the median of the residual second
+moments for each superpixel.
+
+Figure~\ref{fig:smear.by.filter} shows the spatial trend of the {\em
+  smear}, $\sigma^2_{major} + \sigma^2_{minor} = \delta M_{xx} +
+\delta M_{yy}$.  This value corresponds to the increase or decrease in
+the circularly-symmetric component of the image size.  The dynamic
+range of these images is -0.3 to +0.3 pixel$^2$. The tree-ring pattern
+is visible for all 5 filters, though \yps is dominated by the fringing
+pattern.  Structures with relatively low spatial frequencies can also
+be seen.
+
+We can also construct a measurement of the change in ellipticity
+$\sigma^2_{major} - \sigma^2_{minor} = (M_{xx} - M_{yy})^2 + 4
+M_{xy}$.  This value is plotted in Figure~\ref{fig:shear.by.filter}.
+This value is positive definite and is plotted with a color scale
+ranging from -0.02 to 0.22 pixel$^2$.  We can also determine the
+orientation of the corresponding ellipse.  Overlayed on
+Figure~\ref{fig:shear.by.filter} is a set of vectors representing the
+ellipse orientation as a function of postion.  The length of the
+vectors corresponds to the value of $\sigma^2_{major} -
+\sigma^2_{minor}$.  The tree-ring structure is not apparent in this
+figure for any filter.  The spatial variations are low-frequency and
+unrelated to the radial trend from the upper-left corner.
+
+\subsubsection{Correlations Between Systematic Trends}
+
+\begin{table}
+\caption{Systematic Trends : Correlations by filter\label{table:correlation.by.filter}}
+% \tiny
+\begin{center}
+\begin{tabular}{|l|rrrr|}
+\hline
+{\bf Filter} & {\bf psf mags} & {\bf smear} & {\bf astrom} & {\bf flat} \\
+\hline
+\gps & 1.00 & 1.00 &  1.00 & 1.00 \\ 
+\rps & 0.84 & 0.78 &  0.84 & 0.76 \\
+\ips & 0.50 & 0.40 &  0.66 & 0.64 \\
+\zps & 0.26 & 0.16 &  0.37 & 0.33 \\
+\yps & 0.10 & 0.10 &  0.25 & 0.30 \\
+\hline
+\end{tabular}
+\end{center}
+\end{table}
+
+As discussed above, the signal-to-noise per pixel in the plots of the
+systematic trends is relatively low (\approx 1.0).  While the tree
+rings are apparent in many of these figures, there are also
+some other systematic structures which may degrade the signal
+further. To quantatatively compare the tree-ring trends between
+filters and between systematic effects, we need to measure the
+tree-ring structure explicitly and filter out the other effects if
+possible.  To do this, we have applied a high-pass filter to all of
+the relevant images (PSF Photometry residuals, Astrometric residuals
+in the radial direction, flat-field residuals, and second moment smear
+terms) to remove unrelated spatial structures.  We have then measured
+the median of the signal in radial bins centered on (-5,4960) across
+an arc from $\phi$ = -20\degrees\ to -50\degrees (as measured relative
+to the top row of the images.  We have selected a small fraction of
+the arc to minimize the error associated with the choice of the
+pattern center and to avoid several bad cells near the bottom of the
+chip.  \note{draw the arcs?}
+
+For a given trend, the systematic effect is strongly correlated
+between filters.  The strongest correlation is the smear term:
+Figure~\ref{fig:smear.trends} shows the correlation of the smear
+pattern between \gps\ and the other four filters. Even \yps\ is
+strongly correlated with \gps\ despite the presence of the fringe
+pattern.  PSF photometric residuals are also correlated between
+filters, as shown in Figure~\ref{fig:psfmag.trends}.  Here, the
+\yps\ correlation with \gps\ is quite weak: the fringing pattern
+dominates the tree-rings for PSF photometry.  The radial component of
+the astrometric residual is also well correlated between filters, with
+no loss of correlation due to fringing in \yps. Finally, the
+flat-field residuals are generally correlated between filters, but
+both \zps\ and \yps\ are affected by fringing.  For \yps, the
+correlation is completely washed out by the very strong fringing pattern.
+
+For all four measurements, the slope of the fitted lines are listed in
+Table~\ref{table:correlation.by.filter}.  There is a consistency in
+the trend from \gps, with the strongest systematic tree-ring effects
+to \yps, with the weakest effects.  Note that the second moment smear
+and astrometry terms have different relative strength in
+\yps\ compared with \gps.  
+
+% smear trends by filter
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/smear.trends.\plotext}
+\caption{Smear : correlation between filters
+} \label{fig:smear.trends}
+\end{center}
+\end{figure*}
+
+% psfmag trends by filter
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/psfmag.trends.\plotext}
+\caption{PSF magnitude residuals : correlation between filters
+} \label{fig:psfmag.trends}
+\end{center}
+\end{figure*}
+
+% astrom trends by filter
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/astrom.trends.\plotext}
+\caption{Astrometry residuals : correlation between filters
+} \label{fig:astrom.trends}
+\end{center}
+\end{figure*}
+
+% flat trends by filter
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/flat.trends.\plotext}
+\caption{Flat-field rings : correlation between filters
+} \label{fig:flat.trends}
+\end{center}
+\end{figure*}
+
+An important question is the relationship between the different types
+of systematic effects.  Different models for the tree-ring structures
+will make different predictions about the correlations between
+different effects.  We find the following relationships hold.  First,
+the PSF magnitude residuals and the second-moment smear trends are
+strongly anti-correlated: regions which have larger PSFs than the mean
+tend to have smaller measured PSF fluxes than the mean (note that
+$\delta m_{psf}$ is defined so that positive values correspond to
+larger fluxes).  These trends are shown in
+Figure~\ref{fig:smear.vs.psfmag}.  Second, the radial derivative of
+the smear is anti-correlated with the radial component of the
+astrometric residuals: $\frac{\partial (\sigma^2_{major} +
+  \sigma^2_{minor})}{\partial radius} \sim \delta R$ (see
+Figure~\ref{fig:dsmear.vs.astrom}.  Finally, the radial derivative of
+the radial component of the astrometric residual is anti-correlated
+with the flat-field residual errors: $\frac{\partial \delta
+  R}{\partial radius} \sim \delta flat$ (see
+Figure~\ref{fig:dastrom.vs.flat}.  This last relationship is somewhat
+weakly measured.  Because of the periodic nature of the tree rings, it
+is also difficult to completely certain that the flat-field is
+proportional to the derivative of the astrometry residual, and not the
+other way around.  The correlation is somewhat weaker for derivative
+of the flat-field vs astrometry residual.  The correlation is very
+weak between the flat-field and the astrometry directly.  We are
+convinced that we have the sense of the derivative correct by the
+details of specific features.
+
+\begin{table}
+\caption{Systematic Trends : Correlations between trends\label{table:correlation.by.trend}}
+% \tiny
+\begin{center}
+\begin{tabular}{|l|rrr|}
+\hline
+{\bf Filter} & {\bf psf mags} & {\bf $\grad$ smear} & {\bf $\grad$ astrom} \\
+             & {\bf vs smear} & {\bf vs astrom}     & {\bf vs flat}        \\
+\hline
+\gps & -0.056 & -0.060 & -0.47  \\ 
+\rps & -0.071 & -0.073 & -0.45  \\
+\ips & -0.077 & -0.095 & -0.45  \\
+\zps & -0.082 & -0.078 & -0.17  \\
+\hline
+\end{tabular}
+\end{center}
+\end{table}
+
+% smear vs psfmag
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/smear.vs.psfmag.\plotext}
+\caption{Smear vs PSF mag residuals on the rings
+} \label{fig:smear.vs.psfmag}
+\end{center}
+\end{figure*}
+
+% dsmear vs astrom
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/dsmear.vs.astrom.\plotext}
+\caption{gradient of the Smear vs astrometry residuals on the rings
+} \label{fig:dsmear.vs.astrom}
+\end{center}
+\end{figure*}
+
+% dastrom vs flat
+\def\figwidth{6.5in}
+\begin{figure*}[htbp]
+\begin{center}
+\includegraphics[width=\figwidth]{\picdir/dastrom.vs.flat.\plotext}
+\caption{gradient of the astrometry residuals vs flat-field rings
+} \label{fig:dastrom.vs.flat}
+\end{center}
+\end{figure*}
+
+\section{Discussion}
+
+These trends help to illuminate the underlying causes of these
+different effects.  First, we can easily explain the relationship
+between the PSF photometry residuals and the observed smear.  In the
+photometry analysis, we model the PSF allowing for some spatial
+variation in the shape.  However, we limit the 2D variation to a 3x3
+grid for each chip: the PSF parameters may vary smoothly across the
+chip following the bilinear interpolation between the 3x3 grid points.
+Thus, the spatial scale on which we model PSF variations is much
+larger than the spatial scale on which PSF variations are apparently
+occuring.  When the true PSF is larger than the model PSF, our model
+fits systematically underestimate the amount of flux in a given
+object.  Conversely, when the PSF is smaller, we overestimate the
+flux.  The slope of the trend depends on the mean typical seeing for
+the given filter.  For example, the \gps\ seeing is typically
+1.3\arcsec, corresponding to a Gaussian $\sigma$ of 2.15 pixels.  A
+smearing of $\sigma^2_{major} + \sigma^2_{minor} = 0.1$ pixels$^2$
+would increase the size by about 0.02 pixels, or 1\%, so roughly
+consistent with the observed photometric deviation of about 5 to 10
+millimags for this amount of smearing.  \note{model the 2D effect more
+  explicitly}.
+
+Second, the relationship between the flat-field residual and the
+astrometric gradient is consistent with radial variations in the
+plate-scale.  The tree-rings observed by DES are completely attributed
+to effective plate scale changes.  Effective plate scale changes would
+result in flat-field deviations since the flat-field illumination is a
+source of constant surface brightness.  Pixels see a varying amount of
+flux depending on their effective area.  This changing plate scale
+also affects the astrometry since these variations occur on spatial
+scales much smaller than the astrometric model.  In such a model, the
+flat-field deviations are $-1 \times \frac{\partial Pos}{\partial R}$.
+The slope of our relationship is \approx 0.5 in normalized units.
+Thus the observed trends appear to be too weak by a factor of \approx
+2.  \note{looks like a slope of 1.0 would not be excluded by these
+  plots}
+
+The fact that the PSF ellipticity changes are {\em not} correlated
+with the tree ring structure tells us that the effective plate-scale
+changes seen in the flat-field and astrometry signals are not also the
+dominant cause of the PSF photometry errors.  Also, the fact that we
+do not measure significant aperture photometry errors correlated with
+the tree rings confirms this point.  The amplitude of the flat-field
+errors are 1-2 millimagnitudes, much smaller than the PSF photometry
+errors, and far below the pixel-to-pixel noise in the aperture
+magnitudes.
+
+\section{Conclusion}
+
+The tree rings are showing (at least?) two effects, though they must
+be related.  First, the images are experiencing circularly-symmetric
+changes in the PSF size correlated with the tree-ring pattern.  These
+PSF size changes drive errors in the PSF photometry which the are also
+correlated with the tree ring pattern on the scale of a few
+millimagnitudes.  These PSF size changes are consistent with changes
+in the charge diffusion, which also introduces a circularly symmetric
+smearing.
+
+In addition, there are radial plate-scale changes
+correlated with the tree rings.  These plate-scale changes introduce a
+flat-field errors on the scale of \approx 1 millimagnitude and
+astrometric errors in the scale of 2-3 milliarcseconds.  The observed
+relationship between the flat-field deviations and the radial
+derivative of the astrometric deviations confirms that these two
+measurements are caused by the same effect.  
+
+There must be some common cause for both the smearing (charge
+diffusion) and the radial plate-scale changes since the astrometric
+deviations are correlated with the radial derivative of the smearing.
+
+\end{document}
