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Changes between Version 29 and Version 30 of External_Supercomputing_Notes


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Timestamp:
Feb 24, 2014, 2:14:54 PM (12 years ago)
Author:
watersc1
Comment:

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  • External_Supercomputing_Notes

    v29 v30  
     1== 2014-02-24 ==
     2
     3The detrend calculation was impractically slow in the previous version of prepare_chip.  Since each imfile needs to have ~6-7 detrends identified, doing this with detselect commands was very slow.  This led to an execution time for SAS of ~9 hours.  The fix chosen was to have the script look up the information for all possible detrends, and compile this into an in-memory catalog.  This makes the script start up much slower, but reduces the overall time for large datasets.  A quick check comparing the old and new command lists shows that the two methods produce identical results.  The speed of the new code is still long (~2 hours), but is definitely an improvement.  For 620 exposures with 60 imfiles, this seems to work out to an average execution time of ~0.2s/imfile.
     4
     5The next constraint that I'm running into is that attempting to process the SAS illustrates the need to sort out a better way of transferring data.  The SAS detrend set and the test detrend set I have previously transferred are effectively disjoint.  This means transferring ~9x60 files, bumping "how to transfer data" from a thing to think about once the SAS test has been started to a more active issue.
     6
    17== 2014-02-19 ==
    28