Changeset 27625 for branches/eam_branches/stackphot.20100406/psphot/src/psphotStackReadout.c

Timestamp:

Apr 6, 2010, 1:36:51 PM (16 years ago)

Author:

eugene

Message:

working on stackphot

File:

• branches/eam_branches/stackphot.20100406/psphot/src/psphotStackReadout.c (modified) (3 diffs)

branches/eam_branches/stackphot.20100406/psphot/src/psphotStackReadout.c

@@ -13 +13 @@
         return false;
     }
+    // optional break-point for processing
+    char *breakPt = psMetadataLookupStr (NULL, recipe, "BREAK_POINT");
+    PS_ASSERT_PTR_NON_NULL (breakPt, false);
 
-    // set the photcode for this image (XXX currently goes into recipe, should it go into analysis?)
+    // set the photcode for each image
     if (!psphotAddPhotcode (config, view)) {
         psError (PSPHOT_ERR_CONFIG, false, "trouble defining the photcode");
@@ -20 +23 @@
     }
 
-    // generate a background model (median, smoothed image)
-    if (!psphotSetMaskAndVariance (config, view, recipe)) {
-        return psphotReadoutCleanup (config, NULL, recipe, NULL, NULL, NULL);
+    // Generate the mask and weight images
+    if (!psphotSetMaskAndVariance (config, view)) {
+        return psphotReadoutCleanup (config, view);
     }
     if (!strcasecmp (breakPt, "NOTHING")) {
-        return psphotReadoutCleanup(config, NULL, recipe, NULL, NULL, NULL);
+        return psphotReadoutCleanup (config, view);
     }
 
-    // optional break-point for processing
-    char *breakPt = psMetadataLookupStr (NULL, recipe, "BREAK_POINT");
-    PS_ASSERT_PTR_NON_NULL (breakPt, false);
-
     // generate a background model (median, smoothed image)
+    // XXX I think this is not defined correctly for an array of images.
     if (!psphotModelBackground (config, view)) {
-        return psphotReadoutCleanup (config, readout, recipe, NULL, NULL, NULL);
+        return psphotReadoutCleanup (config, view);
     }
     if (!psphotSubtractBackground (config, view)) {
-        return psphotReadoutCleanup (config, readout, recipe, NULL, NULL, NULL);
+        return psphotReadoutCleanup (config, view);
     }
     if (!strcasecmp (breakPt, "BACKMDL")) {
-        return psphotReadoutCleanup (config, readout, recipe, NULL, NULL, NULL);
+        return psphotReadoutCleanup (config, view);
+    }
+
+    // load the psf model, if suppled.  FWHM_X,FWHM_Y,etc are determined and saved on
+    // readout->analysis XXX this function currently only works with a single PSPHOT.INPUT
+    if (!psphotLoadPSF (config, view)) {
+        psError (PSPHOT_ERR_UNKNOWN, false, "error loading psf model");
+        return psphotReadoutCleanup (config, view);
+    }
+
+    if (!psphotStackChisqImage(config, view)) {
+        psError (PSPHOT_ERR_UNKNOWN, false, "failure to generate chisq image");
+        return psphotReadoutCleanup (config, view);
+    }
+    if (!strcasecmp (breakPt, "CHISQ")) {
+        return psphotReadoutCleanup (config, view);
     }
 
     // find the detections (by peak and/or footprint) in the image.
-    pmDetections *detections = psphotFindDetections (NULL, readout, recipe);
-    if (!detections) {
-        psLogMsg ("psphot", 3, "unable to find detections in this image");
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, NULL);
+    if (!psphotFindDetections (config, view, true)) { // pass 1
+        // this only happens if we had an error in psphotFindDetections
+        psError (PSPHOT_ERR_UNKNOWN, false, "failure in peak analysis");
+        return psphotReadoutCleanup (config, view);
     }
 
-    // construct sources and measure basic stats
-    psArray *sources = psphotSourceStats (config, readout, detections, true);
-    if (!sources) return false;
+    // construct sources and measure basic stats (saved on detections->newSources)
+    if (!psphotSourceStats (config, view, true)) { // pass 1
+        psError(PSPHOT_ERR_UNKNOWN, false, "failure to generate sources");
+        return psphotReadoutCleanup (config, view);
+    }
     if (!strcasecmp (breakPt, "PEAKS")) {
-        return psphotReadoutCleanup(config, readout, recipe, detections, psf, sources);
+        return psphotReadoutCleanup(config, view);
     }
 
-    // find blended neighbors of very saturated stars
-    // XXX merge this with Basic Deblend?
-    psphotDeblendSatstars (readout, sources, recipe);
+    // find blended neighbors of very saturated stars (detections->newSources)
+    if (!psphotDeblendSatstars (config, view)) {
+        psError (PSPHOT_ERR_UNKNOWN, false, "failed on satstar deblend analysis");
+        return psphotReadoutCleanup (config, view);
+    }
 
-    // mark blended peaks PS_SOURCE_BLEND
-    if (!psphotBasicDeblend (sources, recipe)) {
-        psLogMsg ("psphot", 3, "failed on deblend analysis");
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
+    // mark blended peaks PS_SOURCE_BLEND (detections->newSources)
+    if (!psphotBasicDeblend (config, view)) {
+        psError (PSPHOT_ERR_UNKNOWN, false, "failed on deblend analysis");
+        return psphotReadoutCleanup (config, view);
     }
 
     // classify sources based on moments, brightness
-    if (!psphotRoughClass (readout, sources, recipe, havePSF)) {
-        psLogMsg ("psphot", 3, "failed to find a valid PSF clump for image");
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
+    if (!psphotRoughClass (config, view)) {
+        psError (PSPHOT_ERR_UNKNOWN, false, "failed to determine rough classifications");
+        return psphotReadoutCleanup (config, view);
+    }
+    // if we were not supplied a PSF model, determine the IQ stats here (detections->newSources)
+    if (!psphotImageQuality (config, view)) { // pass 1
+        psError (PSPHOT_ERR_UNKNOWN, false, "failed to measure image quality");
+        return psphotReadoutCleanup(config, view);
     }
     if (!strcasecmp (breakPt, "MOMENTS")) {
-        return psphotReadoutCleanup(config, readout, recipe, detections, psf, sources);
+        return psphotReadoutCleanup (config, view);
     }
 
-    if (!havePSF && !psphotImageQuality (recipe, sources)) {
-        psLogMsg("psphot", 3, "failed to measure image quality");
-        return psphotReadoutCleanup(config, readout, recipe, detections, psf, sources);
+    // use bright stellar objects to measure PSF if we were supplied a PSF for any input file,
+    // this step is skipped
+    if (!psphotChoosePSF (config, view)) { // pass 1
+        psLogMsg ("psphot", 3, "failure to construct a psf model");
+        return psphotReadoutCleanup (config, view);
+    }
+    if (!strcasecmp (breakPt, "PSFMODEL")) {
+        return psphotReadoutCleanup (config, view);
     }
 
-    // if we were not supplied a PSF, choose one here
-    if (psf == NULL) {
-        // use bright stellar objects to measure PSF
-        // XXX if we do not have enough stars to generate the PSF, build one
-        // from the SEEING guess and model class
-        psf = psphotChoosePSF (readout, sources, recipe);
-        if (psf == NULL) {
-            psLogMsg ("psphot", 3, "failure to construct a psf model");
-            return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
-        }
-        havePSF = true;
-    }
-    if (!strcasecmp (breakPt, "PSFMODEL")) {
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
-    }
-    psphotVisualShowPSFModel (readout, psf);
-
     // include externally-supplied sources
-    psphotLoadExtSources (config, view, sources);
+    // XXX fix this in the new multi-input context
+    // psphotLoadExtSources (config, view); // pass 1
 
     // construct an initial model for each object, set the radius to fitRadius, set circular fit mask
-    psphotGuessModels (config, readout, sources, psf);
+    psphotGuessModels (config, view);
 
+    // merge the newly selected sources into the existing list
+    // NOTE: merge OLD and NEW
+    psphotMergeSources (config, view);
+
+    // *** generate the objects (which unify the sources from the different images)
+    // pmArray *objects = psphotMatchSources (config, view);
+    
     // linear PSF fit to source peaks, subtract the models from the image (in PSF mask)
-    psphotFitSourcesLinear (readout, sources, recipe, psf, FALSE);
-
-    // We have to place these visualizations here because the models are not realized until
-    // psphotGuessModels or fitted until psphotFitSourcesLinear.
-    psphotVisualShowPSFStars (recipe, psf, sources);
+    // psphotFitSourcesLinearStack (config, objects, FALSE);
 
     // identify CRs and extended sources
-    psphotSourceSize (config, readout, sources, recipe, psf, 0);
-    if (!strcasecmp (breakPt, "ENSEMBLE")) {
-        goto finish;
-    }
-    psphotVisualShowSatStars (recipe, psf, sources);
-
-    // non-linear PSF and EXT fit to brighter sources
-    // replace model flux, adjust mask as needed, fit, subtract the models (full stamp)
-    psphotBlendFit (config, readout, sources, psf);
-
-    // replace all sources
-    psphotReplaceAllSources (sources, recipe);
-
-    // linear fit to include all sources (subtract again)
-    psphotFitSourcesLinear (readout, sources, recipe, psf, TRUE);
-
-    // if we only do one pass, skip to extended source analysis
-    if (!strcasecmp (breakPt, "PASS1")) {
-        goto pass1finish;
-    }
-    // NOTE: possibly re-measure background model here with objects subtracted
-
-    // add noise for subtracted objects
-    psphotAddNoise (readout, sources, recipe);
-
-    // find fainter sources (pass 2)
-    detections = psphotFindDetections (detections, readout, recipe);
-
-    // remove noise for subtracted objects (ie, return to normal noise level)
-    psphotSubNoise (readout, sources, recipe);
-
-    // define new sources based on only the new peaks
-    psArray *newSources = psphotSourceStats (config, readout, detections, false);
-
-    // set source type
-    if (!psphotRoughClass (readout, newSources, recipe, havePSF)) {
-        psLogMsg ("psphot", 3, "failed to find a valid PSF clump for image");
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
-    }
-
-    // create full input models, set the radius to fitRadius, set circular fit mask
-    psphotGuessModels (config, readout, newSources, psf);
-
-    // replace all sources so fit below applies to all at once
-    psphotReplaceAllSources (sources, recipe);
-
-    // merge the newly selected sources into the existing list
-    psphotMergeSources (sources, newSources);
-    psFree (newSources);
-
-    // linear fit to all sources
-    psphotFitSourcesLinear (readout, sources, recipe, psf, TRUE);
-
-pass1finish:
-
-    // measure source size for the remaining sources
-    psphotSourceSize (config, readout, sources, recipe, psf, 0);
-
-    psphotExtendedSourceAnalysis (readout, sources, recipe);
-
-    psphotExtendedSourceFits (readout, sources, recipe);
-
-finish:
-
-    // plot positive sources
-    // psphotSourcePlots (readout, sources, recipe);
+    psphotSourceSize (config, view, TRUE);
 
     // measure aperture photometry corrections
-    if (!psphotApResid (config, readout, sources, psf)) {
+    if (!psphotApResid (config, view)) {
         psLogMsg ("psphot", 3, "failed on psphotApResid");
-        return psphotReadoutCleanup (config, readout, recipe, detections, psf, sources);
+        return psphotReadoutCleanup (config, view);
     }
 
     // calculate source magnitudes
-    psphotMagnitudes(config, readout, view, sources, psf);
+    psphotMagnitudes(config, view);
 
-    if (!psphotEfficiency(config, readout, view, psf, recipe, sources)) {
+    if (!psphotEfficiency(config, view)) {
         psErrorStackPrint(stderr, "Unable to determine detection efficiencies from fake sources");
         psErrorClear();
@@ -200 +151 @@
 
     // drop the references to the image pixels held by each source
-    psphotSourceFreePixels (sources);
+    psphotSourceFreePixels (config, view);
 
     // create the exported-metadata and free local data
-    return psphotReadoutCleanup(config, readout, recipe, detections, psf, sources);
+    return psphotReadoutCleanup (config, view);
 }