Changeset 38838 for trunk/ippToPsps/jython/batch.py
- Timestamp:
- Oct 10, 2015, 12:56:31 PM (11 years ago)
- File:
-
- 1 edited
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trunk/ippToPsps/jython/batch.py (modified) (1 diff)
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trunk/ippToPsps/jython/batch.py
r38837 r38838 443 443 def importIppTables(self, columns="*", filter=""): 444 444 445 self.logger.infoPair("Importing tables with filter", filter) 446 447 # print "trying to read ", self.fits.getPath() 448 449 try: 450 tables = stilts.treads(self.fits.getPath()) 451 except: 452 self.logger.errorPair("STILTS could not import from", self.fits.getPath()) 453 return False 454 455 count = 0 456 for table in tables: 457 458 # print "import smf table ", table 459 match = re.match(filter, table.name) 460 if not match: continue 461 self.logger.debugPair("Reading IPP table", table.name) 462 table = stilts.tpipe(table, cmd='addcol table_index $0') 463 464 table = stilts.tpipe(table, cmd='explodeall') 465 466 # print "read smf table ", table 467 self.logger.infoPair("read smf table", table) 468 469 # drop any previous tables before import 470 self.scratchDb.dropTable(table.name) 471 472 # IPP FITS files are littered with infinities, so remove these 473 self.logger.debug("Removing Infinity values from all columns") 474 table = stilts.tpipe(table, cmd='keepcols "' + columns + '"') 475 table = stilts.tpipe(table, cmd='replaceval -Infinity null *') 476 table = stilts.tpipe(table, cmd='replaceval Infinity null *') 477 # print "cleaned up values ", table 478 479 try: 480 table.write(self.scratchDb.url + '#' + table.name) 481 # XXX this one is not needed 482 # self.scratchDb.killLastConnectionID() 483 count = count + 1 484 except: 485 self.logger.exception("Problem writing table '" + table.name + "' to the database") 445 self.logger.infoPair("Importing tables with filter", filter) 446 447 # print "trying to read ", self.fits.getPath() 448 449 try: 450 tables = stilts.treads(self.fits.getPath()) 451 except: 452 self.logger.errorPair("STILTS could not import from", self.fits.getPath()) 453 return False 454 455 self.tablesLoaded = [] 456 457 count = 0 458 for table in tables: 459 460 # print "import smf table ", table 461 match = re.match(filter, table.name) 462 if not match: continue 463 self.logger.debugPair("Reading IPP table", table.name) 464 table = stilts.tpipe(table, cmd='addcol table_index $0') 465 466 table = stilts.tpipe(table, cmd='explodeall') 467 468 # print "read smf table ", table 469 self.logger.infoPair("read smf table", table) 470 471 # drop any previous tables before import 472 self.scratchDb.dropTable(table.name) 473 474 # IPP FITS files are littered with infinities, so remove these 475 self.logger.debug("Removing Infinity values from all columns") 476 table = stilts.tpipe(table, cmd='keepcols "' + columns + '"') 477 table = stilts.tpipe(table, cmd='replaceval -Infinity null *') 478 table = stilts.tpipe(table, cmd='replaceval Infinity null *') 479 # print "cleaned up values ", table 480 481 try: 482 table.write(self.scratchDb.url + '#' + table.name) 483 # XXX this one is not needed 484 # self.scratchDb.killLastConnectionID() 485 count = count + 1 486 except: 487 self.logger.exception("Problem writing table '" + table.name + "' to the database") 488 489 self.tablesLoaded.append(table.name) 486 490 487 491 self.logger.infoPair("Done. Imported", "%d tables" % count)
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