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Timestamp:
May 9, 2019, 8:54:16 AM (7 years ago)
Author:
eugene
Message:

adding high-res version of figures, add \picdir variable

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  • trunk/doc/release.2015/ps1.detrend/detrend.tex

    r40718 r40725  
    2121%\def\plotmode{bw}
    2222
    23 % arxiv needs PDF graphics, but publishers mostly was PS
    24 %\def\plotext{pdf}
    25 \def\plotext{ps}
     23% arxiv needs small graphics, but publishers want full-scale
     24%\def\plotopt{_sm}
     25\def\plotopt{}
    2626
    2727% use this to make the figure picture path flexible:
    28 %\def\picdir{PATH}
    29 \def\picdir{ALTPATH}
     28%\def\picdir{images}
     29\def\picdir{.}
    3030
    3131% CZW commands from my previous draft.
    … …  
    126126% insert additional keywords as appropriate:
    127127\keywords{Surveys:\PSONE }
    128 
    129 %% NOTE 2018.12.06 EAM : Things that still need to be done prior to submission:
    130 %% * generate a valid bibtex entry for the diff paper, include in refs
    131 %% * better covariance discussion (wait until analysis.tex version written)
    132 %% * annotate the ghost, glint, and perhaps other images with arrows to illustrate features
    133 %% * check on total size vs arxiv limits
    134128
    135129\section{Introduction}
    … …  
    284278\begin{figure}[htpb]
    285279  \centering
    286   \includegraphics[width=0.9\hsize,angle=0,clip]{{images/gpc1.layout}.pdf}
     280  \includegraphics[width=0.9\hsize,angle=0,clip]{{\picdir/gpc1.layout}.pdf}
    287281  \caption{Diagram illustrating layout of OTA devices in GPC1.  The
    288282    blue dots mark the locations of the amplifiers for xy00 cells in
    … …  
    326320  \centering
    327321  \begin{minipage}{0.45\hsize}
    328     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_M_OS_NL_XY23_sm.png}
     322    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5677g0123o_M_OS_NL_XY23\plotopt.png}
    329323  \end{minipage}%
    330324  \begin{minipage}{0.45\hsize}
    331     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_to_DARK_XY23_sm.png}
     325    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5677g0123o_to_DARK_XY23\plotopt.png}
    332326  \end{minipage}
    333327  \caption{{\bf Dark Correction:} An example of the dark model application to exposure o5677g0123o, OTA23 (2011-04-26, 43s \gps{} filter).  The left panel shows the image data mosaicked to the OTA level, and has had the static mask applied, the overscan subtracted, and the detector non-linearity corrected.  The right panel, shows the same exposure with the dark applied in addition to the processing shown on the left, removing the amplifier glows in the cell corners.}
    … …  
    365359right.  The OTA $Y$ labels increase upward in the mosaic.
    366360
    367 %%\textit{Note: These papers are being placed on the arXiv.org to
    368 %%  provide crucial support information at the time of the public
    369 %%  release of Data Release 1 (DR1).  We expect the arXiv versions to be
    370 %%  updated prior to submission to the Astrophysical Journal in January
    371 %%  2017.  Feedback and suggestions for additional information from early
    372 %%  users of the data products are welcome during the submission and
    373 %%  refereeing process.}
    374 
    375 
    376361\section{GPC1 Detrend Details}
    377362\label{sec:detrending}
    … …  
    465450\begin{figure}[htpb]
    466451  \centering
    467   \includegraphics[width=0.9\hsize,angle=0,clip]{images/B_profile_v1.pdf}
     452  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/B_profile_v1.pdf}
    468453  \caption{Example showing a profile cut across exposure o5676g0195,
    469454    OTA67 (2011-04-25, 43s \gps{} filter).  The entire first row of
    … …  
    543528  \centering
    544529  \begin{minipage}{0.45\hsize}
    545     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_VIDEODARK_VDim_Rdark_XY22_sm.png}
     530    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5677g0123o_VIDEODARK_VDim_Rdark_XY22\plotopt.png}
    546531  \end{minipage}%
    547532  \begin{minipage}{0.45\hsize}
    548     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_VIDEODARK_VDim_VDdark_XY22_sm.png}
     533    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5677g0123o_VIDEODARK_VDim_VDdark_XY22\plotopt.png}
    549534  \end{minipage}
    550535  \caption{{\bf Video Dark:} An example of the video dark model application to exposure o5677g0123o, OTA22 (2011-04-26, 43s \gps{} filter), which has a video cell located in cell xy16.  The left panel shows the image data mosaicked to the OTA level, and has had the static mask applied, the overscan subtracted, the detector non-linearity corrected, and a regular dark applied.  The right panel, shows the same exposure with a video dark applied instead of the standard dark.  The main impact of this change is the improved correction of the corner glows, which are over subtracted with the standard dark.}
    … …  
    629614  \centering
    630615  \begin{minipage}{0.45\hsize}
    631     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5220g0025o_nofringe_XY53_sm.png}
     616    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5220g0025o_nofringe_XY53\plotopt.png}
    632617  \end{minipage}%
    633618  \begin{minipage}{0.45\hsize}
    634     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5220g0025o_fringe_XY53_sm.png}
     619    \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5220g0025o_fringe_XY53\plotopt.png}
    635620  \end{minipage}
    636621  \caption{{\bf Fringing:} Example of the \yps{} filter fringe pattern
    … …  
    813798\begin{figure}[b]
    814799  \centering
    815   \includegraphics[width=0.9\hsize,angle=0,clip]{images/gpc1_mask_indexed.png}
     800  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/gpc1_mask_indexed.png}
    816801  \caption{Image map of the GPC1 static mask.  The CTE regions are clearly visible as roughly triangular patches covering the corners of some OTAs.  Some entire cells are masked, including an entire column of cells on OTA14.  Calcite cells remove large areas from OTA17 AND OTA76.}
    817802  \label{fig:static mask}
    … …  
    10571042\begin{figure*}[htpb]
    10581043  \centering
    1059   \includegraphics[width=0.9\hsize,angle=0,clip]{images/GPC1_Ghosts_with_Zoom.png}
     1044% \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/GPC1_Ghosts_with_Zoom.png}
     1045  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/GPC1_Ghosts_with_Zoom.pdf}
    10601046  \caption{{\bf Ghosts:} Example of optical ghosts in GPC1.  The
    10611047    central $6 \times 6$ detectors from exposure o5677g0123o
    … …  
    10731059\begin{figure*}[htpb]
    10741060  \centering
    1075   \includegraphics[width=0.9\hsize,angle=0,clip]{images/full_fpa_glints_sm.png}
     1061  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/full_fpa_glints\plotopt.png}
    10761062  \caption{{\bf Glints:}  Example of a glint on exposure o5379g0103o (2010-07-02, 45s \ips{} filter).  The source star out of the field of view creates a long reflection that extends through OTA73 and OTA63.}
    10771063  \label{fig:optical glints}
    … …  
    10801066\begin{figure}[htpb]
    10811067  \centering
    1082   \includegraphics[width=0.9\hsize,angle=0,clip]{images/o6802g0338o_SATSTAR_XY51_sm.png}
     1068  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o6802g0338o_SATSTAR_XY51\plotopt.png}
    10831069  \caption{Example of saturated star, with diffraction spikes extending from the core on exposure o6802g0338o, OTA51 (2014-05-25, 45s \gps{} filter).}
    10841070  \label{fig:saturated star}
    … …  
    13251311minutes.
    13261312
    1327 %% \begin{figure}[htpb]
    1328 %%   \centering
    1329 %%   \begin{minipage}{0.45\hsize}
    1330 %%     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_nbt_XY11.png}
    1331 %%   \end{minipage}%
    1332 %%   \begin{minipage}{0.45\hsize}
    1333 %%     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0124o_nbt_XY11.png}
    1334 %%   \end{minipage}
    1335 %%   \begin{minipage}{0.45\hsize}
    1336 %%     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123o_wbt_XY11.png}
    1337 %%   \end{minipage}%
    1338 %%   \begin{minipage}{0.45\hsize}
    1339 %%     \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0124o_wbt_XY11.png}
    1340 %%   \end{minipage}
    1341 %%   \caption{{\bf Persistent Charge:}  Example of OTA11 cell xy50 on exposures o5677g0123o (left) and o5677g0124o (right).  The top panels show the image with all appropriate detrending steps, but without burntool, and the bottom show the same with burntool applied.  There is some slight over subtraction in fitting the initial trail, but the impact of the trail is greatly reduced in both exposures.}
    1342 %%   \label{fig:burntool images}
    1343 %% \end{figure}
    1344 
    13451313\begin{figure}[htpb]
    13461314  \centering
    1347   \includegraphics[width=0.9\hsize,angle=0,clip]{images/persistent_charge.png}
     1315  %% need a small version of this for arxiv
     1316  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/persistent_charge\plotopt.png}
    13481317  \caption{{\bf Persistent Charge:}  Example of OTA11 cell xy50 on exposures o5677g0123o (left) and o5677g0124o (right).  The top panels show the image with all appropriate detrending steps, but without burntool, and the bottom show the same with burntool applied.  There is some slight over subtraction in fitting the initial trail, but the impact of the trail is greatly reduced in both exposures.}
    13491318  \label{fig:burntool images}
    … …  
    13821351\begin{figure}[htpb]
    13831352  \centering
    1384   \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5677g0123n4o_XY11_bt_trail.pdf}
     1353  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/o5677g0123n4o_XY11_bt_trail.pdf}
    13851354
    13861355  \caption{{\bf Burntool Correction:} Example of a profile cut along
    … …  
    15231492\begin{figure}[htpb]
    15241493  \centering
    1525   \includegraphics[width=0.9\hsize,angle=0,clip]{images/pattern_row_edit.png}
     1494  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/pattern_row_edit.png}
    15261495  \caption{Diagram illustrating in red which cells on GPC1 require the
    15271496    \nocode{PATTERN.ROW} correction to be applied.  The footprint of
    … …  
    15611530shows an example of a cell pre- and post-correction.
    15621531
    1563 %% \begin{minipage}{0.45\hsize}
    1564 %%   \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5379g0103o_npt_XY57_sm.png}
    1565 %% \end{minipage}%
    1566 %% \begin{minipage}{0.45\hsize}
    1567 %%   \includegraphics[width=0.9\hsize,angle=0,clip]{images/o5379g0103o_wpt_XY57_sm.png}
    1568 %% \end{minipage}
    1569 
    15701532\begin{figure*}[htpb]
    15711533  \centering
    1572   \includegraphics[width=0.9\hsize,angle=0,clip]{images/{correlated.noise}.png}
     1534  %% need small version for arxiv
     1535  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/{correlated.noise\plotopt}.png}
    15731536  \caption{{\bf Correlated Noise:} Example of the
    15741537    \nocode{PATTERN.ROW} correction on exposure o5379g0103o OTA57
    … …  
    15861549\begin{figure*}[htpb]
    15871550  \centering
    1588   \includegraphics[width=0.9\hsize,angle=0,clip]{images/{N157.v1}.png}
     1551  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/{N157.v1\plotopt}.png}
    15891552  \caption{These four panels illustrate the impact of the
    15901553    \nocode{PATTERN.ROW}, \nocode{PATTERN.CONTINUITY}, and background
    … …  
    16011564\begin{figure*}[htpb]
    16021565  \centering
    1603   \includegraphics[width=0.9\hsize,angle=0,clip]{images/{N157.v2}.png}
     1566  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/{N157.v2\plotopt}.png}
    16041567  \caption{These two panels illustrate the impact of the
    16051568    \nocode{PATTERN.CONTINUITY}, and background subtraction steps on a
    … …  
    17361699background subtraction on a large galaxy both with and withouth the
    17371700\ippmisc{PATTERN.ROW} correction.
    1738 
    1739 % \note{give examples with simulations and show examples of over-subtraction}
    17401701
    17411702\section{GPC1 Detrend Construction}
    … …  
    18881849\begin{figure}[htpb]
    18891850  \centering
    1890   \includegraphics[width=0.9\hsize,angle=0,clip]{images/warp_2046019_sci_sm.png}
     1851  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/warp_2046019_sci\plotopt.png}
    18911852  \caption{Example of the warp image for skycell skycell.1146.095
    18921853    centered at ($\alpha,\delta$) = (11.934, -4.197) for exposure
    … …  
    19011862\begin{figure}[htpb]
    19021863  \centering
    1903   \includegraphics[width=0.9\hsize,angle=0,clip]{images/warp_2046019_var_sm.png}
     1864  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/warp_2046019_var\plotopt.png}
    19041865  \caption{Example of the warp variance image for skycell
    19051866    skycell.1146.095 of exposure o5104g0266o, the same as in Figure
    … …  
    19161877\begin{figure}[htpb]
    19171878  \centering
    1918   \includegraphics[width=0.9\hsize,angle=0,clip]{images/warp_2046019_mask.png}
     1879  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/warp_2046019_mask.png}
    19191880  \caption{Example of the warp mask image for skycell skycell.1146.095
    19201881    of exposure o5104g0266o, the same as in Figure \ref{fig:warp
    … …  
    19251886    ghost mask is visible just below the center as an elliptical
    19261887    region.
    1927 %    In addition OTA24 shows the precautionary crosstalk bleed masks
    1928 %    for the two brightest stars applied to all cells within the same
    1929 %    row.
    19301888  \label{fig:warp mask}
    19311889  }
    … …  
    19841942\begin{figure}[t]
    19851943  \centering
    1986   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_sci_sm.png}
     1944  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_sci\plotopt.png}
    19871945  \caption{Example of the stack image for skycell skycell.1146.095
    19881946    centered at ($\alpha,\delta$) = (11.934, -4.197) in the \rps{}
    … …  
    20311989\begin{figure}[t]
    20321990  \centering
    2033   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_var_sm.png}
     1991  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_var\plotopt.png}
    20341992  \caption{Example of the stack variance image for skycell
    20351993    skycell.1146.095 centered at ($\alpha,\delta$) = (11.934, -4.197)
    … …  
    20722030\begin{figure}[t]
    20732031  \centering
    2074   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_mask.png}
     2032  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_mask.png}
    20752033  \caption{Example of the stack mask image for skycell
    20762034    skycell.1146.095 centered at ($\alpha,\delta$) = (11.934, -4.197)
    … …  
    21202078\begin{figure}[t]
    21212079  \centering
    2122   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_num_sm.png}
     2080  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_num\plotopt.png}
    21232081  \caption{Example of the stack number image for skycell
    21242082    skycell.1146.095 centered at ($\alpha,\delta$) = (11.934, -4.197)
    … …  
    21672125\begin{figure}[t]
    21682126  \centering
    2169   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_exp_sm.png}
     2127  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_exp\plotopt.png}
    21702128  \caption{Example of the stack exposure time image for skycell
    21712129    skycell.1146.095 centered at ($\alpha,\delta$) = (11.934, -4.197)
    … …  
    22242182\begin{figure}[t]
    22252183  \centering
    2226   \includegraphics[width=0.9\hsize,angle=0,clip]{images/stack_3956997_expwt_sm.png}
     2184  \includegraphics[width=0.9\hsize,angle=0,clip]{\picdir/stack_3956997_expwt\plotopt.png}
    22272185  \caption{Example of the stack weighted exposure image for skycell
    22282186    skycell.1146.095 centered at ($\alpha,\delta$) = (11.934, -4.197)
    … …  
    25412499
    25422500\bibliographystyle{apj}
    2543 \bibliography{lib}{}
    2544 % \input{detrend.bbl}
     2501% \bibliography{lib}{}
     2502\input{detrend.bbl}
    25452503
    25462504\end{document}
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